Citrus Sinensis ID: 043901
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 331 | ||||||
| 356546478 | 647 | PREDICTED: uncharacterized protein LOC10 | 0.993 | 0.508 | 0.360 | 1e-55 | |
| 356546480 | 652 | PREDICTED: uncharacterized protein LOC10 | 0.993 | 0.504 | 0.355 | 6e-55 | |
| 357447499 | 693 | Serine/threonine protein phosphatase 6 r | 1.0 | 0.477 | 0.344 | 5e-54 | |
| 359476634 | 969 | PREDICTED: uncharacterized protein LOC10 | 0.969 | 0.331 | 0.32 | 2e-47 | |
| 357447493 | 676 | Serine/threonine protein phosphatase 6 r | 0.978 | 0.479 | 0.323 | 3e-46 | |
| 255554112 | 786 | ankyrin repeat-containing protein, putat | 0.697 | 0.293 | 0.411 | 6e-46 | |
| 147855983 | 1513 | hypothetical protein VITISV_044165 [Viti | 0.984 | 0.215 | 0.330 | 7e-45 | |
| 359482815 | 625 | PREDICTED: uncharacterized protein LOC10 | 0.921 | 0.488 | 0.336 | 5e-43 | |
| 359495447 | 733 | PREDICTED: uncharacterized protein LOC10 | 0.806 | 0.364 | 0.368 | 5e-43 | |
| 359489101 | 654 | PREDICTED: uncharacterized protein LOC10 | 0.936 | 0.474 | 0.340 | 2e-42 |
| >gi|356546478|ref|XP_003541653.1| PREDICTED: uncharacterized protein LOC100777612 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 141/391 (36%), Positives = 199/391 (50%), Gaps = 62/391 (15%)
Query: 1 MEVNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIRL---- 56
M+V SL +AV+GQW + AY NP + EAK+T +E + + +G+ +
Sbjct: 4 MDVESLFNYAVKGQWREALDAYNKNPGALEAKITKVEDTVLHVAVHVGQTCFVKSVLDNI 63
Query: 57 --------------GGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALH 102
GN LGN +CH A +D +L+ RN + ETPLFLAA+H
Sbjct: 64 DKEVSLNILCMQNSKGNTPLHLSAQLGNVELCHNMAQRDPKLVCFRNVEGETPLFLAAVH 123
Query: 103 GNMDAFLCLRSFNQAKDNRQ------CRKNNGETILHSAISGEYFSIAFQIMRAYPDLVN 156
G +AF CL Q + + + RK+NG+TILHS I+ EYF +A QI+ YP+LVN
Sbjct: 124 GKREAFFCLHENQQRRRDDEEDGSLLVRKSNGDTILHSTIASEYFGLALQIIELYPNLVN 183
Query: 157 SVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISF-SKN 215
SVN++GL+ L ILA+KP FK +R+ L I +NDEE+ +S +K
Sbjct: 184 SVNQDGLSPLQILAAKPNCFKSSTRMELLQTIGK--DDNAASNDEENNVSRKSEEEQAKK 241
Query: 216 DDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEK---- 271
+K FPPN+ A F +MK L I+ G G +K + + M +
Sbjct: 242 LEKKRYLFPPNWGATIRFLTHMMKILLIICGFGASWIGKIQRKKVKHILAKQVMNELIQR 301
Query: 272 -------KDQQSG------------------------RNETAILIAAKMGVAEMVKKILD 300
K +G R ++ ILIAAKMGVAEMV+KIL+
Sbjct: 302 TCSSSLYKHDHTGTSNINSSTSSNNQSKEKGGFQKIRRTDSPILIAAKMGVAEMVEKILE 361
Query: 301 TFPVAMQDMDSEKKNLVLLAVENRQTSIYKL 331
T PVA+ D+D++ KN+VLLA+ENRQ +Y L
Sbjct: 362 TDPVAIHDVDADNKNVVLLAIENRQPHVYSL 392
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356546480|ref|XP_003541654.1| PREDICTED: uncharacterized protein LOC100778153 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 139/391 (35%), Positives = 198/391 (50%), Gaps = 62/391 (15%)
Query: 1 MEVNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIRL---- 56
++V SL +AV+GQW + AY NP + EAK+T +E + + +G+ +
Sbjct: 4 IDVESLFNYAVKGQWREALDAYNKNPETLEAKITKVEDTVLHVAVHVGQTCFVKSVLDNI 63
Query: 57 --------------GGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALH 102
GN LGN +CH A +D +L+ RN + ETPLFLAA+H
Sbjct: 64 DKEVSLNILCMQNSKGNTPLHLSAQLGNVELCHNMAKRDPKLVCFRNVEGETPLFLAAVH 123
Query: 103 GNMDAFLCLRSFNQAKDNRQ------CRKNNGETILHSAISGEYFSIAFQIMRAYPDLVN 156
G +AF CL Q + + + RK+NG+TILHS + EYF +A QI+ YP+LVN
Sbjct: 124 GKREAFFCLHENQQRRRDDEEDGSLLVRKSNGDTILHSTVVSEYFGLALQIIELYPNLVN 183
Query: 157 SVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISF-SKN 215
SVN++GL+ L ILA+KP FK +R+ L I +NDEE+ +S +K
Sbjct: 184 SVNQDGLSPLQILAAKPNCFKSSTRMELLQTI--RKDDNAASNDEENNVSRKSEEEQAKK 241
Query: 216 DDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEK---- 271
+K FPPN+ A F +MK L I+ G G +K + + M +
Sbjct: 242 LEKKRYLFPPNWGATIQFLTHMMKILLIICGFGASWIGKIQRKKVKHILAKQVMNELIQR 301
Query: 272 -------KDQQSG------------------------RNETAILIAAKMGVAEMVKKILD 300
K +G R ++ ILIAAKMGVAEMV+KIL+
Sbjct: 302 TCSSSLYKHDHTGTSNINSSPSSNNQSKEKGCYQKIRRTDSPILIAAKMGVAEMVEKILE 361
Query: 301 TFPVAMQDMDSEKKNLVLLAVENRQTSIYKL 331
T PVA+ D+D++ KN+VLLA+ENRQ +Y L
Sbjct: 362 TDPVAIHDVDADNKNVVLLAIENRQPHVYSL 392
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357447499|ref|XP_003594025.1| Serine/threonine protein phosphatase 6 regulatory ankyrin repeat subunit A [Medicago truncatula] gi|355483073|gb|AES64276.1| Serine/threonine protein phosphatase 6 regulatory ankyrin repeat subunit A [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 150/435 (34%), Positives = 203/435 (46%), Gaps = 104/435 (23%)
Query: 1 MEVNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLE-----------------TQLYTL 43
+E SL A+RGQW ++++YE NP EAK+T E T L +
Sbjct: 4 VEFESLFNHAMRGQWREVLESYEQNPEVLEAKITKAEDTVLHIAIYVSQTIFVTTLLDNI 63
Query: 44 QQQLGKPILYIRLG-GNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALH 102
Q + + IL ++ GN LGN +C+ A +D LIS RN + ETPLFLAA+H
Sbjct: 64 SQDMCRNILRMQNSKGNTPLHVAAELGNVEICNNIARRDPILISYRNFEGETPLFLAAVH 123
Query: 103 GNMDAFLCLRSFNQAKDNRQCR-KNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNEN 161
G DAF CL Q KD+ KNNG+TILHS IS EYF +A QI+ YP LVN VN
Sbjct: 124 GKRDAFFCLHGHEQNKDDDSLSIKNNGDTILHSTISSEYFGLALQIIGMYPKLVNVVNHE 183
Query: 162 GLTRLHILASKPTAFKRGSRLGLFDRII-----------------------HYY------ 192
GL+ LHILA KP F+ +R+ L DRII H+Y
Sbjct: 184 GLSPLHILARKPNCFRSCTRMELIDRIIYTCSIVDEDKEERYDIQAHTQTSHHYPLNYGT 243
Query: 193 -------------------KTKGEANDEESPECNR-SISFSKNDDKCGQFFPPNYAACFL 232
TK A +E C+R S +K +FPPN+ +
Sbjct: 244 CMTFISLLNRFFKVTTTGKDTKAAATSDEENHCSRKSEQEQAKKEKKNHWFPPNWESMIR 303
Query: 233 FFWLLMKALPIVLGLGL-----------KNFKISII-------------------PYIKK 262
L MK I+ G+G K+ + + P +++
Sbjct: 304 ILILAMKVFLIIFGVGATWVEKIQRKKEKHIRAKQVMNELIQHASLYKYDFTGPSPRVEE 363
Query: 263 VQGLKF------MEKKDQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNL 316
+ G E + + R + ILIAAKMGV EM++ ILD +PVA+ D+DS+ KN+
Sbjct: 364 LGGGDIDKIKSNTENEVIEKRRMVSPILIAAKMGVTEMIENILDMYPVAIHDVDSQNKNV 423
Query: 317 VLLAVENRQTSIYKL 331
VLLA+ENRQ +Y L
Sbjct: 424 VLLAIENRQPHVYSL 438
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Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359476634|ref|XP_002273692.2| PREDICTED: uncharacterized protein LOC100246246 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 144/450 (32%), Positives = 208/450 (46%), Gaps = 129/450 (28%)
Query: 10 AVRGQWDNIVQAYENNPMSREAKLT-NLETQLYT------------LQQQLGKP-ILYIR 55
A++G+W+++V Y P + +AK+ + ET L+ L + + +P + +
Sbjct: 22 AIKGKWEDVVDLYRRQPRAHKAKMVVSGETALHMAVSAGKDDVVEQLVELISEPKVEALS 81
Query: 56 LGGNHGRKYIK---PLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLR 112
+G + G + +GN MC ++ D L++ RN + ETPLFLAALHG+ DAFL LR
Sbjct: 82 IGNDRGNTPLHLAASMGNAHMCRYISAIDTRLVAARNREKETPLFLAALHGHTDAFLWLR 141
Query: 113 SFNQAKDNRQ-CRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILAS 171
+ + + CR+ +G+TILH AI+GEYF +A I+ Y DLVN V++ GLT LH+LAS
Sbjct: 142 EKCSSNEPYEYCRRGDGKTILHCAIAGEYFDLAILIIDLYEDLVNYVDDKGLTPLHVLAS 201
Query: 172 KPTAFKRGSRLGLFDRII------------------------------------------ 189
KPTAF+ G+ L +R+I
Sbjct: 202 KPTAFRSGTHLHFIERLIYECIYVDKLKTVEDYPCIQQICAEKVELRRYPENYHTCMKFW 261
Query: 190 --------HYYKTKGEAN-DEESPE--CNRSISFSKNDDKCGQFFPPNYAACFLFFWLLM 238
H K K + D ++PE +R S + D + FPPNY C F
Sbjct: 262 NMIKRPVSHMIKRKNHGDVDADNPELPVSRKDSHHHSGD-LHRAFPPNYGICLEFIKFAN 320
Query: 239 KALPIVLGLGL------------------------------------KNFKIS------- 255
KA+ +VLGLG +N +S
Sbjct: 321 KAMLVVLGLGFGKIRRIVDKKEKHSRSLQIMDELLSCASSYGYNKNGRNPNLSQSGEDEE 380
Query: 256 IIPYIKKVQ---------GLKFM-----EKKDQQSGRNETAILIAAKMGVAEMVKKILDT 301
PY +K L FM +K+ + G ET ILIAAK G+ EMV IL+
Sbjct: 381 TTPYKEKWHLNALLISHPELNFMNLATEKKRTVEFGNMETPILIAAKNGIKEMVDSILEK 440
Query: 302 FPVAMQDMDSEKKNLVLLAVENRQTSIYKL 331
FPVA+ D + EKKN+VLLAVENRQ +Y++
Sbjct: 441 FPVAIHDRNKEKKNVVLLAVENRQPEVYEI 470
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357447493|ref|XP_003594022.1| Serine/threonine protein phosphatase 6 regulatory ankyrin repeat subunit C [Medicago truncatula] gi|355483070|gb|AES64273.1| Serine/threonine protein phosphatase 6 regulatory ankyrin repeat subunit C [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 139/430 (32%), Positives = 192/430 (44%), Gaps = 106/430 (24%)
Query: 1 MEVNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIRL---- 56
+E SL A+RGQW ++++YE P EAK+T E + + + + L
Sbjct: 4 IEFESLFNHAMRGQWREVLESYEKTPEVLEAKITEAEDTVLHIAVYVSQTCFVTALLDNI 63
Query: 57 --------------GGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALH 102
GN LGN +C+ A + LIS RN + ETPLFLAA+H
Sbjct: 64 CQDVCMNILRTQNSKGNTPLHVAAELGNVDICNNIAKRCPILISYRNFEGETPLFLAAVH 123
Query: 103 GNMDAFLCLRSFNQAKDNRQCR-KNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNEN 161
G DAF CL Q KD+ KNNG+TILHS IS EYF +A QI+ YP LVN+VN +
Sbjct: 124 GKRDAFFCLHGHQQNKDDDSLSIKNNGDTILHSTISSEYFGLAIQIIGMYPKLVNAVNHD 183
Query: 162 GLTRLHILASKPTAFKRGSRLGLFDRIIH------------------------------- 190
GL+ LHILA KP F+ + + L +RII+
Sbjct: 184 GLSPLHILARKPNCFRSCTTMVLIERIIYTCSIVDEDKEERYDHINEAYTQTSRHYPLNY 243
Query: 191 ------------YYK-------TKGEANDEESPECNR-SISFSKNDDKCGQFFPPNYAAC 230
++K T A +E C+R S +K +FPP +
Sbjct: 244 GTCMTFLSLLNRFFKVTTTRKDTNAAATSDEENNCSRTSEQVQAKKEKKNTWFPPIWEPM 303
Query: 231 FLFFWLLMKALPIVLGLG------LKNFKISII------------------------PYI 260
L MKA I+ G+G ++ K +I P++
Sbjct: 304 IQLLILAMKAFLIISGVGATWVEKIQRRKKKLIRAKQVMNELIQCASLYKYDFTGPSPHV 363
Query: 261 KKVQGLKFMEKKDQQSG------RNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKK 314
+ G + K R + ILIAAKMGV EM++KILD +PVA+QD+ S+ K
Sbjct: 364 EDHGGDNMDKIKSNTENEAIAKRRTVSPILIAAKMGVTEMIEKILDVYPVAIQDVVSQNK 423
Query: 315 NLVLLAVENR 324
N+VLLA+ENR
Sbjct: 424 NVVLLAIENR 433
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Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255554112|ref|XP_002518096.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223542692|gb|EEF44229.1| ankyrin repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 105/255 (41%), Positives = 145/255 (56%), Gaps = 24/255 (9%)
Query: 1 MEVNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKP---------- 50
ME N + + A+ G+WD +V+AY+ NP + ++T + G+
Sbjct: 1 MEANGIFESAMNGRWDQVVEAYKKNPSLEDGRITRSRNTAVHIAVSDGRTEVVSKLVEIF 60
Query: 51 ------ILYIR-LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHG 103
+L+I+ GN LG+ MC+C A++DR LI RN++ ETPLFL+ALHG
Sbjct: 61 GDNASRVLHIKNEKGNTPLHLAAKLGDAKMCYCLAARDRSLIRTRNSEGETPLFLSALHG 120
Query: 104 NMDAFLCL----RSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVN 159
+AFLCL R ++ D CRK+NG+TILHSAISGEYFS+AFQI+ YP+LV SVN
Sbjct: 121 KKNAFLCLHFLYREAHKENDYSLCRKSNGDTILHSAISGEYFSLAFQIIHNYPNLVTSVN 180
Query: 160 ENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKC 219
E+GL+ LHILASKP AF+ G L F R+I+ E E N + S + ++
Sbjct: 181 ESGLSPLHILASKPNAFRSGCHLPPFSRLIYCCLIVHEIQQETH---NPEVWLSNSGNET 237
Query: 220 GQFFPPNYAACFLFF 234
G +P NY C FF
Sbjct: 238 GPKYPQNYQTCMSFF 252
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147855983|emb|CAN82817.1| hypothetical protein VITISV_044165 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 132/399 (33%), Positives = 199/399 (49%), Gaps = 73/399 (18%)
Query: 5 SLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIRL-------- 56
SL +A++G+W+ +V + +P + + K T + G+ + ++L
Sbjct: 866 SLISYAMQGKWEKVVDICKEDPWAHDEKTTTSGDTALHIAVSDGREDVVVKLVQLMAHRN 925
Query: 57 ---------GGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDA 107
GN +GN MC C A++ EL+ VRNN++ETPLFLAAL+G DA
Sbjct: 926 VYLINIKNDRGNTPLHLAASVGNVRMCKCIAAEYPELVGVRNNENETPLFLAALYGMKDA 985
Query: 108 FLCLRSFNQAKDNRQC----RKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGL 163
FLCL + + N + R+++GE LH AI+GEYF +AF I+ YPDLVN V+E G+
Sbjct: 986 FLCLSNICSSTANNKVYEYLRRSDGENSLHCAITGEYFDLAFTIIHEYPDLVNYVDERGI 1045
Query: 164 TRLHILASKPTAFKRGSRLGLFDRIIH-------YYKTKGEANDEESPECNRSI------ 210
+ LH+LASK T F+ G+RL FD II+ K EA++ + N I
Sbjct: 1046 SPLHLLASKATLFRSGTRLNWFDEIIYLCVPVKKLLPQKYEADENPNHTENFYILTNLWN 1105
Query: 211 -------SFSKNDDKCGQFFPPNYAACFLFFWLLMK---ALPIVLGLGLKNFKI-----S 255
S N + Q P Y C+ F L LP V+ +G + K+ S
Sbjct: 1106 MIKASGKXSSHNARRQEQPHPNYYGICYENFIKLXAXXWXLPAVI-VGKRYKKVFDQETS 1164
Query: 256 IIPYI---------------KKVQGLKFMEKKDQQS--------GRNETAILIAAKMGVA 292
++ Y K E K ++ G+ ++ +LI A+ G+
Sbjct: 1165 LLAYYGEASPDDSESEEEPRPKASAHHSSEIKQKEEALKRTWGMGKRKSPVLIVAENGII 1224
Query: 293 EMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYKL 331
EMV+KIL FP A++ +DS++KN+VLLAV+NRQ S+Y+L
Sbjct: 1225 EMVEKILKLFPAAIRHVDSDQKNIVLLAVKNRQISVYEL 1263
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482815|ref|XP_002271264.2| PREDICTED: uncharacterized protein LOC100256071 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 124/368 (33%), Positives = 183/368 (49%), Gaps = 63/368 (17%)
Query: 10 AVRGQWDNIVQAYENNPMSREAKL-TNLETQLYT------------LQQQLGKPIL-YIR 55
A++ W+ +V+ E +P + +A + + ET LY L +Q+ L ++
Sbjct: 21 AMQSDWEEVVRICEQHPSAHKAIIPASGETILYMAVLDMEEKIVEKLVEQISPSELDALK 80
Query: 56 LGGNHGRKYIK---PLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLR 112
+G G + +GN MC C KDR+L+ N+ +ETPLFLAAL G +AFL L
Sbjct: 81 IGNEEGDTPLHLAASIGNVQMCKCITDKDRKLVGFPNSKAETPLFLAALRGQKEAFLFLH 140
Query: 113 SFNQAKDNRQ-CRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILAS 171
++ + CR+++G ILH I EYF AFQI+ Y DLV+SV+ENGLT LH+LAS
Sbjct: 141 GMCESSERHDYCRRDDGRNILHCVIDEEYFDFAFQIIHQYRDLVDSVDENGLTPLHLLAS 200
Query: 172 KPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACF 231
KPTAF+ G ++ K E ++SP+ ++ + P NY C
Sbjct: 201 KPTAFRSG---------VYVEDLKEEELQQQSPQTSKRKKILEG--------PENYQTCM 243
Query: 232 LFFWLLMKALPIVLGLGLKNFKISIIP-----YIKKVQGLKFMEKKD------------- 273
F ++ + + + + P + QG+ + K+
Sbjct: 244 YFGDMIKTSAITIFAPNCQKDDDAENPNQGRKATSEPQGMYVEDPKEDELCQQRPQTSKS 303
Query: 274 ----------QQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVEN 323
Q S + T ILIAAK GV EMV+KIL+ PVA+ D + EKKN+VLLAVEN
Sbjct: 304 KQKLQCPENCQTSEKKNTPILIAAKNGVKEMVEKILEVNPVAINDKNEEKKNVVLLAVEN 363
Query: 324 RQTSIYKL 331
RQ +Y+L
Sbjct: 364 RQPEVYEL 371
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359495447|ref|XP_002274376.2| PREDICTED: uncharacterized protein LOC100254555 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 156/293 (53%), Gaps = 26/293 (8%)
Query: 10 AVRGQWDNIVQAYENNPMSREAKLTNLE-------------TQLYTLQQQLGKPILYIR- 55
A+ G+W +++ Y+NN M+ AK+T LE ++ + Q+G+ I+
Sbjct: 21 AMEGRWKEVIEIYKNNTMAHRAKITVLEDTALHIAVLEGKEAEVEKMVYQIGEDARMIKN 80
Query: 56 LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFN 115
GN +GN +MC C A+++ L+ RN +ETPLFLAAL G DAFLCL
Sbjct: 81 KMGNTPLHLAASIGNVSMCKCIANRNARLVGARNKKNETPLFLAALQGKKDAFLCLLEIC 140
Query: 116 QAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTA 175
+ + CR+++GETILH AI+GEYF +AF I+ +P L N VNE GL+ LH+LA+KPTA
Sbjct: 141 RDQALEFCRRDDGETILHCAITGEYFDLAFTIILEFPKLANYVNEQGLSPLHLLANKPTA 200
Query: 176 FKRGSRLGLFDRIIHYYKT---KGEANDEESP-ECNRSISFSKNDDKCG----QFFPPNY 227
F+ G+ L D+II+Y + GE D E+P E + G Q +PPNY
Sbjct: 201 FRSGTHLSWIDKIIYYSENAPKSGEHTDAENPKEGQAGPQHQGHQSNIGADGKQRYPPNY 260
Query: 228 AACFLFFWLLMKA----LPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQS 276
CF F L+ K L +LG G K I K ++ M++ Q +
Sbjct: 261 GICFEFIKLVCKGMLAILLSILGFGSNKIKRIIHKKQKHTWSIQIMKELLQHT 313
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359489101|ref|XP_003633874.1| PREDICTED: uncharacterized protein LOC100267645 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 136/399 (34%), Positives = 194/399 (48%), Gaps = 89/399 (22%)
Query: 6 LSKFAVRGQWDNIVQAYENNPMSREAKL-TNLETQLYTLQQQLGKPILY--IRLGGNHG- 61
L KF + G W +V Y+ P + AKL T+ ET L+ + + I++ + L
Sbjct: 19 LLKFCMEGNWGMVVDMYDKYPSLQNAKLSTSGETALHIAVWESAEDIVHRLVELIDKQSE 78
Query: 62 RKYIKP-------------------LGNEAMCHCTASKDRELISVRNNDSETPLFLAALH 102
R++ P +GN MC C A K+ EL+ +RN ETPLFLAAL
Sbjct: 79 RRWQTPSALWIPNHRGNTPLHLAALIGNVGMCMCIAGKNEELLDLRNKAGETPLFLAALR 138
Query: 103 GNMDAFLCLRSFNQAKDNRQC--RKNNGETILHSAISGEYFSIAFQIMRAYPD-LVNSVN 159
G DAFL L A+ + R +G+TILH AI GEYF +A++I+ Y D L+ +VN
Sbjct: 139 GKKDAFLYLHQICGAERQYEYHRRHRDGQTILHVAIIGEYFDLAYEIICKYDDRLIYAVN 198
Query: 160 ENGLTRLHILASKPTAFKRGSRLGLF-DRIIHYYKTKGEANDEESPECNRSISFSKNDDK 218
E G T LH+LAS+P F+ GSRLG F RII+++K EE R +
Sbjct: 199 EKGCTPLHLLASQPDVFRSGSRLGGFLSRIIYHWKPSSNVEAEE----GRPL-------- 246
Query: 219 CGQFFPPNYAACFLFFWLLMKALPIVLGL-GL-----------KN-FKISIIP------- 258
FPPNY + + +A+ ++L L GL KN + + I+
Sbjct: 247 ---LFPPNYHTSIMIIKTIWRAMLVILDLIGLIDIQKLQEKKEKNIWSVQIMDLMLLKSS 303
Query: 259 ---YIKKVQGLK------FMEKKDQQSGRNETAI------------------LIAAKMGV 291
Y G F + + ++ TAI L+AAK G+
Sbjct: 304 HRNYYSSFSGCHPGLMKDFPDSYEPENTDWYTAILKEELSSKQPIQGTEAPILLAAKNGI 363
Query: 292 AEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYK 330
+MV++ILD FP+A+ D DS+ KN+VLLAVENRQT +Y+
Sbjct: 364 TKMVERILDVFPMAILDRDSDGKNIVLLAVENRQTKLYE 402
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
No hits with e-value below 0.001 by BLAST
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00023793001 | SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (644 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 331 | |||
| cd00204 | 126 | cd00204, ANK, ankyrin repeats; ankyrin repeats med | 1e-08 | |
| cd00204 | 126 | cd00204, ANK, ankyrin repeats; ankyrin repeats med | 5e-07 | |
| pfam12796 | 91 | pfam12796, Ank_2, Ankyrin repeats (3 copies) | 2e-04 | |
| cd00204 | 126 | cd00204, ANK, ankyrin repeats; ankyrin repeats med | 8e-04 |
| >gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 1e-08
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 87 VRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQ 146
R+ D TPL LAA +G+++ L + + N+G T LH A + I
Sbjct: 2 ARDEDGRTPLHLAASNGHLEVVKLLLENG---ADVNAKDNDGRTPLHLAAKNGHLEIVKL 58
Query: 147 IMRAYPDLVNSVNENGLTRLHILASK 172
++ D VN+ +++G T LH+ A
Sbjct: 59 LLEKGAD-VNARDKDGNTPLHLAARN 83
|
The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126 |
| >gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 5e-07
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 85 ISVRNNDSETPLFLAALHGNMDA--FLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFS 142
++ ++ND TPL LAA +G+++ L + + R +G T LH A
Sbjct: 33 VNAKDNDGRTPLHLAAKNGHLEIVKLLL-----EKGADVNARDKDGNTPLHLAARNGNLD 87
Query: 143 IAFQIMRAYPDLVNSVNENGLTRLHILASK 172
+ +++ D VN+ +++G T LH+ A
Sbjct: 88 VVKLLLKHGAD-VNARDKDGRTPLHLAAKN 116
|
The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126 |
| >gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies) | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 2e-04
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 85 ISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIA 144
V D++T L LAA +GN++ L + + +G T LH A I
Sbjct: 21 ADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAKD---KDGNTALHLAARNGNLEIV 77
Query: 145 FQIMRAYPDL 154
++ D+
Sbjct: 78 KLLLEHGADI 87
|
Length = 91 |
| >gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 8e-04
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 85 ISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIA 144
++ R+ D TPL LAA +GN+D ++ + + R +G T LH A + +
Sbjct: 66 VNARDKDGNTPLHLAARNGNLD---VVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVV 122
|
The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 331 | |||
| KOG4412 | 226 | consensus 26S proteasome regulatory complex, subun | 100.0 | |
| PHA02874 | 434 | ankyrin repeat protein; Provisional | 100.0 | |
| PHA02716 | 764 | CPXV016; CPX019; EVM010; Provisional | 100.0 | |
| PHA02791 | 284 | ankyrin-like protein; Provisional | 100.0 | |
| PHA02876 | 682 | ankyrin repeat protein; Provisional | 100.0 | |
| PHA03100 | 480 | ankyrin repeat protein; Provisional | 100.0 | |
| PHA02946 | 446 | ankyin-like protein; Provisional | 100.0 | |
| PHA03095 | 471 | ankyrin-like protein; Provisional | 100.0 | |
| PHA02875 | 413 | ankyrin repeat protein; Provisional | 100.0 | |
| PHA02989 | 494 | ankyrin repeat protein; Provisional | 100.0 | |
| PHA02946 | 446 | ankyin-like protein; Provisional | 100.0 | |
| PHA02798 | 489 | ankyrin-like protein; Provisional | 100.0 | |
| PHA02791 | 284 | ankyrin-like protein; Provisional | 100.0 | |
| PHA02878 | 477 | ankyrin repeat protein; Provisional | 100.0 | |
| KOG4412 | 226 | consensus 26S proteasome regulatory complex, subun | 100.0 | |
| KOG0509 | 600 | consensus Ankyrin repeat and DHHC-type Zn-finger d | 100.0 | |
| PHA02874 | 434 | ankyrin repeat protein; Provisional | 100.0 | |
| PHA02876 | 682 | ankyrin repeat protein; Provisional | 100.0 | |
| KOG0510 | 929 | consensus Ankyrin repeat protein [General function | 100.0 | |
| PHA03100 | 480 | ankyrin repeat protein; Provisional | 100.0 | |
| PHA02875 | 413 | ankyrin repeat protein; Provisional | 99.98 | |
| PHA02878 | 477 | ankyrin repeat protein; Provisional | 99.98 | |
| PHA02917 | 661 | ankyrin-like protein; Provisional | 99.97 | |
| PHA02716 | 764 | CPXV016; CPX019; EVM010; Provisional | 99.97 | |
| PHA03095 | 471 | ankyrin-like protein; Provisional | 99.97 | |
| KOG0508 | 615 | consensus Ankyrin repeat protein [General function | 99.97 | |
| PHA02859 | 209 | ankyrin repeat protein; Provisional | 99.97 | |
| KOG0510 | 929 | consensus Ankyrin repeat protein [General function | 99.97 | |
| KOG0509 | 600 | consensus Ankyrin repeat and DHHC-type Zn-finger d | 99.97 | |
| PHA02989 | 494 | ankyrin repeat protein; Provisional | 99.96 | |
| KOG0508 | 615 | consensus Ankyrin repeat protein [General function | 99.96 | |
| PHA02730 | 672 | ankyrin-like protein; Provisional | 99.96 | |
| PHA02917 | 661 | ankyrin-like protein; Provisional | 99.96 | |
| PHA02730 | 672 | ankyrin-like protein; Provisional | 99.96 | |
| KOG4177 | 1143 | consensus Ankyrin [Cell wall/membrane/envelope bio | 99.96 | |
| PHA02795 | 437 | ankyrin-like protein; Provisional | 99.95 | |
| PHA02859 | 209 | ankyrin repeat protein; Provisional | 99.95 | |
| PHA02798 | 489 | ankyrin-like protein; Provisional | 99.95 | |
| KOG4177 | 1143 | consensus Ankyrin [Cell wall/membrane/envelope bio | 99.95 | |
| PHA02792 | 631 | ankyrin-like protein; Provisional | 99.94 | |
| PHA02795 | 437 | ankyrin-like protein; Provisional | 99.94 | |
| PLN03192 | 823 | Voltage-dependent potassium channel; Provisional | 99.93 | |
| KOG0507 | 854 | consensus CASK-interacting adaptor protein (caskin | 99.93 | |
| PHA02792 | 631 | ankyrin-like protein; Provisional | 99.92 | |
| TIGR00870 | 743 | trp transient-receptor-potential calcium channel p | 99.92 | |
| KOG0502 | 296 | consensus Integral membrane ankyrin-repeat protein | 99.91 | |
| PLN03192 | 823 | Voltage-dependent potassium channel; Provisional | 99.9 | |
| PHA02741 | 169 | hypothetical protein; Provisional | 99.88 | |
| KOG0514 | 452 | consensus Ankyrin repeat protein [General function | 99.88 | |
| KOG0505 | 527 | consensus Myosin phosphatase, regulatory subunit [ | 99.88 | |
| KOG0502 | 296 | consensus Integral membrane ankyrin-repeat protein | 99.88 | |
| PHA02743 | 166 | Viral ankyrin protein; Provisional | 99.87 | |
| KOG0507 | 854 | consensus CASK-interacting adaptor protein (caskin | 99.86 | |
| PHA02884 | 300 | ankyrin repeat protein; Provisional | 99.86 | |
| PHA02743 | 166 | Viral ankyrin protein; Provisional | 99.86 | |
| KOG0505 | 527 | consensus Myosin phosphatase, regulatory subunit [ | 99.86 | |
| TIGR00870 | 743 | trp transient-receptor-potential calcium channel p | 99.85 | |
| PHA02741 | 169 | hypothetical protein; Provisional | 99.85 | |
| KOG0512 | 228 | consensus Fetal globin-inducing factor (contains a | 99.84 | |
| KOG4369 | 2131 | consensus RTK signaling protein MASK/UNC-44 [Signa | 99.84 | |
| PHA02736 | 154 | Viral ankyrin protein; Provisional | 99.83 | |
| PHA02884 | 300 | ankyrin repeat protein; Provisional | 99.82 | |
| KOG0512 | 228 | consensus Fetal globin-inducing factor (contains a | 99.82 | |
| PHA02736 | 154 | Viral ankyrin protein; Provisional | 99.81 | |
| KOG0195 | 448 | consensus Integrin-linked kinase [Signal transduct | 99.79 | |
| PF12796 | 89 | Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02 | 99.79 | |
| cd00204 | 126 | ANK ankyrin repeats; ankyrin repeats mediate prote | 99.76 | |
| KOG3676 | 782 | consensus Ca2+-permeable cation channel OSM-9 and | 99.76 | |
| KOG4369 | 2131 | consensus RTK signaling protein MASK/UNC-44 [Signa | 99.75 | |
| KOG0514 | 452 | consensus Ankyrin repeat protein [General function | 99.72 | |
| KOG4214 | 117 | consensus Myotrophin and similar proteins [Transcr | 99.72 | |
| cd00204 | 126 | ANK ankyrin repeats; ankyrin repeats mediate prote | 99.7 | |
| PF12796 | 89 | Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02 | 99.7 | |
| KOG0195 | 448 | consensus Integrin-linked kinase [Signal transduct | 99.7 | |
| KOG4214 | 117 | consensus Myotrophin and similar proteins [Transcr | 99.65 | |
| KOG3676 | 782 | consensus Ca2+-permeable cation channel OSM-9 and | 99.6 | |
| COG0666 | 235 | Arp FOG: Ankyrin repeat [General function predicti | 99.57 | |
| PF13637 | 54 | Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A | 99.53 | |
| PTZ00322 | 664 | 6-phosphofructo-2-kinase/fructose-2,6-biphosphatas | 99.52 | |
| PF13637 | 54 | Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A | 99.51 | |
| PF13857 | 56 | Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A | 99.51 | |
| COG0666 | 235 | Arp FOG: Ankyrin repeat [General function predicti | 99.49 | |
| PF13857 | 56 | Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A | 99.44 | |
| KOG0515 | 752 | consensus p53-interacting protein 53BP/ASPP, conta | 99.4 | |
| KOG1710 | 396 | consensus MYND Zn-finger and ankyrin repeat protei | 99.39 | |
| KOG0515 | 752 | consensus p53-interacting protein 53BP/ASPP, conta | 99.36 | |
| KOG1710 | 396 | consensus MYND Zn-finger and ankyrin repeat protei | 99.34 | |
| PTZ00322 | 664 | 6-phosphofructo-2-kinase/fructose-2,6-biphosphatas | 99.33 | |
| KOG0783 | 1267 | consensus Uncharacterized conserved protein, conta | 99.04 | |
| KOG0782 | 1004 | consensus Predicted diacylglycerol kinase [Signal | 98.98 | |
| KOG0783 | 1267 | consensus Uncharacterized conserved protein, conta | 98.94 | |
| PF13606 | 30 | Ank_3: Ankyrin repeat | 98.93 | |
| PF00023 | 33 | Ank: Ankyrin repeat Hereditary spherocytosis; Inte | 98.89 | |
| PF13606 | 30 | Ank_3: Ankyrin repeat | 98.8 | |
| PF00023 | 33 | Ank: Ankyrin repeat Hereditary spherocytosis; Inte | 98.76 | |
| KOG0818 | 669 | consensus GTPase-activating proteins of the GIT fa | 98.74 | |
| KOG0506 | 622 | consensus Glutaminase (contains ankyrin repeat) [A | 98.69 | |
| KOG0522 | 560 | consensus Ankyrin repeat protein [General function | 98.69 | |
| KOG0506 | 622 | consensus Glutaminase (contains ankyrin repeat) [A | 98.65 | |
| KOG0782 | 1004 | consensus Predicted diacylglycerol kinase [Signal | 98.61 | |
| KOG0705 | 749 | consensus GTPase-activating protein Centaurin gamm | 98.59 | |
| KOG0818 | 669 | consensus GTPase-activating proteins of the GIT fa | 98.58 | |
| KOG3609 | 822 | consensus Receptor-activated Ca2+-permeable cation | 98.43 | |
| KOG0705 | 749 | consensus GTPase-activating protein Centaurin gamm | 98.37 | |
| KOG0522 | 560 | consensus Ankyrin repeat protein [General function | 98.34 | |
| KOG0521 | 785 | consensus Putative GTPase activating proteins (GAP | 98.22 | |
| KOG3609 | 822 | consensus Receptor-activated Ca2+-permeable cation | 98.09 | |
| KOG0511 | 516 | consensus Ankyrin repeat protein [General function | 98.09 | |
| KOG0521 | 785 | consensus Putative GTPase activating proteins (GAP | 97.98 | |
| KOG0511 | 516 | consensus Ankyrin repeat protein [General function | 97.95 | |
| KOG0520 | 975 | consensus Uncharacterized conserved protein, conta | 97.83 | |
| KOG2384 | 223 | consensus Major histocompatibility complex protein | 97.77 | |
| KOG0520 | 975 | consensus Uncharacterized conserved protein, conta | 97.68 | |
| KOG2384 | 223 | consensus Major histocompatibility complex protein | 97.64 | |
| smart00248 | 30 | ANK ankyrin repeats. Ankyrin repeats are about 33 | 97.13 | |
| KOG2505 | 591 | consensus Ankyrin repeat protein [General function | 97.04 | |
| smart00248 | 30 | ANK ankyrin repeats. Ankyrin repeats are about 33 | 96.88 | |
| KOG2505 | 591 | consensus Ankyrin repeat protein [General function | 96.71 | |
| PF06128 | 284 | Shigella_OspC: Shigella flexneri OspC protein; Int | 96.06 | |
| PF03158 | 192 | DUF249: Multigene family 530 protein; InterPro: IP | 94.42 | |
| PF06128 | 284 | Shigella_OspC: Shigella flexneri OspC protein; Int | 92.62 | |
| PF11929 | 76 | DUF3447: Domain of unknown function (DUF3447); Int | 90.99 | |
| PF03158 | 192 | DUF249: Multigene family 530 protein; InterPro: IP | 89.43 | |
| PF11929 | 76 | DUF3447: Domain of unknown function (DUF3447); Int | 88.42 |
| >KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=238.67 Aligned_cols=181 Identities=19% Similarity=0.179 Sum_probs=164.7
Q ss_pred ceec--cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhc-CCCccccccccCCC
Q 043901 52 LYIR--LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSF-NQAKDNRQCRKNNG 128 (331)
Q Consensus 52 ~~~~--~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~~~g 128 (331)
++.+ .+|+||||+||+.|+.+++.+|++-....+|.+|..|+||||+|+..|..++++.|+.. |+++ |.+++.|
T Consensus 30 L~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~adv---na~tn~G 106 (226)
T KOG4412|consen 30 LNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADV---NATTNGG 106 (226)
T ss_pred hhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCc---ceecCCC
Confidence 4445 58999999999999999999999643334888999999999999999999999999998 9998 9999999
Q ss_pred CcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccc
Q 043901 129 ETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNR 208 (331)
Q Consensus 129 ~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~ 208 (331)
.|+||||+..|+++|+++|++.|+. ++.+|+.|+||||-|+..|. +++++.|++.+..+
T Consensus 107 ~T~LHyAagK~r~eIaqlLle~ga~-i~~kD~~~qtplHRAAavGk-------lkvie~Li~~~a~~------------- 165 (226)
T KOG4412|consen 107 QTCLHYAAGKGRLEIAQLLLEKGAL-IRIKDKQGQTPLHRAAAVGK-------LKVIEYLISQGAPL------------- 165 (226)
T ss_pred cceehhhhcCChhhHHHHHHhcCCC-CcccccccCchhHHHHhccc-------hhhHHHHHhcCCCC-------------
Confidence 9999999999999999999999988 99999999999999999999 89999998887542
Q ss_pred cccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHh
Q 043901 209 SISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAK 288 (331)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~ 288 (331)
|.+|+.|+||||.|..
T Consensus 166 ----------------------------------------------------------------n~qDk~G~TpL~~al~ 181 (226)
T KOG4412|consen 166 ----------------------------------------------------------------NTQDKYGFTPLHHALA 181 (226)
T ss_pred ----------------------------------------------------------------CcccccCccHHHHHHh
Confidence 4568899999999988
Q ss_pred cChHHHHHHHHhhCCccccccccCCCcHHHHHHH
Q 043901 289 MGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVE 322 (331)
Q Consensus 289 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~ 322 (331)
-|+.++..+|++ .|+|++..|++| ||+-.|+-
T Consensus 182 e~~~d~a~lLV~-~gAd~~~edke~-t~~~~a~~ 213 (226)
T KOG4412|consen 182 EGHPDVAVLLVR-AGADTDREDKEG-TALRIACN 213 (226)
T ss_pred ccCchHHHHHHH-hccceeeccccC-chHHHHHH
Confidence 899999999999 689999999999 99887753
|
|
| >PHA02874 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=283.77 Aligned_cols=261 Identities=15% Similarity=0.134 Sum_probs=213.4
Q ss_pred hHHHHHHhcCCHHHHHHHHHcCCccccccccCCccH-----------HHH-HHhhhCCCcceec-cCCCchhhhhhccCC
Q 043901 4 NSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQ-----------LYT-LQQQLGKPILYIR-LGGNHGRKYIKPLGN 70 (331)
Q Consensus 4 ~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~-----------~v~-Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~ 70 (331)
..|..|+..|+.+.++.++...+.........+.|| +|+ |++.| .+ ++.. ..|.||||+|+..|+
T Consensus 3 ~~l~~ai~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~G-a~-~n~~~~~~~t~L~~A~~~~~ 80 (434)
T PHA02874 3 QDLRMCIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHG-AD-INHINTKIPHPLLTAIKIGA 80 (434)
T ss_pred HHHHHHHhcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCC-CC-CCCCCCCCCCHHHHHHHcCC
Confidence 468899999999999999987776554444455666 899 99988 44 4555 789999999999999
Q ss_pred HHHHHHHHhcCcc----------------------cccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCC
Q 043901 71 EAMCHCTASKDRE----------------------LISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNG 128 (331)
Q Consensus 71 ~~~v~~Ll~~~~~----------------------~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g 128 (331)
.+++++|+++|++ +++.+|..|.||||+|+..|+.+++++|++.|+++ +.+|..|
T Consensus 81 ~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~---n~~d~~g 157 (434)
T PHA02874 81 HDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADV---NIEDDNG 157 (434)
T ss_pred HHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCC---CCcCCCC
Confidence 9999999987643 25677889999999999999999999999999998 8999999
Q ss_pred CcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCc-CCCCCCCccc
Q 043901 129 ETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGE-ANDEESPECN 207 (331)
Q Consensus 129 ~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~~~~~~~~ 207 (331)
.||||+|+..|+.+++++|++.|+. ++..+..|.||||+|+..++ .++++.|+..+.+... ...+.+|+|.
T Consensus 158 ~tpLh~A~~~~~~~iv~~Ll~~g~~-~n~~~~~g~tpL~~A~~~g~-------~~iv~~Ll~~g~~i~~~~~~g~TpL~~ 229 (434)
T PHA02874 158 CYPIHIAIKHNFFDIIKLLLEKGAY-ANVKDNNGESPLHNAAEYGD-------YACIKLLIDHGNHIMNKCKNGFTPLHN 229 (434)
T ss_pred CCHHHHHHHCCcHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCC-------HHHHHHHHhCCCCCcCCCCCCCCHHHH
Confidence 9999999999999999999999988 89999999999999999998 7999999998877653 3455666664
Q ss_pred ccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHH
Q 043901 208 RSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAA 287 (331)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~ 287 (331)
|+..+. ..+.+++. |.+ .+.+|..|+||||+|+
T Consensus 230 ---A~~~~~---------------~~i~~Ll~------~~~-----------------------in~~d~~G~TpLh~A~ 262 (434)
T PHA02874 230 ---AIIHNR---------------SAIELLIN------NAS-----------------------INDQDIDGSTPLHHAI 262 (434)
T ss_pred ---HHHCCh---------------HHHHHHHc------CCC-----------------------CCCcCCCCCCHHHHHH
Confidence 111100 01111110 100 0567889999999999
Q ss_pred hcC-hHHHHHHHHhhCCccccccccCCCcHHHHHHHcCc
Q 043901 288 KMG-VAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQ 325 (331)
Q Consensus 288 ~~g-~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~ 325 (331)
..+ +.+++++|++ .|++++.+|..|+||+|+|+++++
T Consensus 263 ~~~~~~~iv~~Ll~-~gad~n~~d~~g~TpL~~A~~~~~ 300 (434)
T PHA02874 263 NPPCDIDIIDILLY-HKADISIKDNKGENPIDTAFKYIN 300 (434)
T ss_pred hcCCcHHHHHHHHH-CcCCCCCCCCCCCCHHHHHHHhCC
Confidence 876 8999999999 799999999999999999999873
|
|
| >PHA02716 CPXV016; CPX019; EVM010; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=281.96 Aligned_cols=296 Identities=13% Similarity=0.021 Sum_probs=209.1
Q ss_pred hcCCHHHHHHHHHcC-CccccccccCCccH-------------HHH-HHhhhCCCcceec-cCCCchhhhhhccCC--HH
Q 043901 11 VRGQWDNIVQAYENN-PMSREAKLTNLETQ-------------LYT-LQQQLGKPILYIR-LGGNHGRKYIKPLGN--EA 72 (331)
Q Consensus 11 ~~g~~~~~~~ll~~~-~~~~~~~~~~~~t~-------------~v~-Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~--~~ 72 (331)
+.++.+.++.|++.+ .+........|.|| +++ |++.| .+ ++.+ ..|.||||+|+..|+ .+
T Consensus 151 ~~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~G-AD-VN~kD~~G~TPLH~Aa~~g~~~~e 228 (764)
T PHA02716 151 RGIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNG-VN-VNLQNNHLITPLHTYLITGNVCAS 228 (764)
T ss_pred cCCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcC-CC-CCCCCCCCCCHHHHHHHcCCCCHH
Confidence 568889999999887 44322112223444 889 99998 44 5666 899999999999995 59
Q ss_pred HHHHHHhcCcccccccCCCCCcHHHHH-------------------------------------HhcCCHHHHHHHHhcC
Q 043901 73 MCHCTASKDRELISVRNNDSETPLFLA-------------------------------------ALHGNMDAFLCLRSFN 115 (331)
Q Consensus 73 ~v~~Ll~~~~~~~~~~d~~g~tpLh~A-------------------------------------~~~~~~~~~~~Ll~~g 115 (331)
+|++|++.|++ +|.+|..|.||||+| +..|+.+++++|++.|
T Consensus 229 IVklLLe~GAD-VN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~G 307 (764)
T PHA02716 229 VIKKIIELGGD-MDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPG 307 (764)
T ss_pred HHHHHHHcCCC-CCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCC
Confidence 99999999998 999999999999975 3457889999999999
Q ss_pred CCccccccccCCCCcHHHHHHh--cCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcc-------cccccchhHH
Q 043901 116 QAKDNRQCRKNNGETILHSAIS--GEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAF-------KRGSRLGLFD 186 (331)
Q Consensus 116 ~~~~~~~~~~~~g~t~Lh~A~~--~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~-------~~~~~~~~~~ 186 (331)
+++ +.+|..|+||||+|+. .++.+++++|++.|++ ++.+|..|+||||+|+...... ......++++
T Consensus 308 AdI---N~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GAD-IN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVk 383 (764)
T PHA02716 308 VKL---HYKDSAGRTCLHQYILRHNISTDIIKLLHEYGND-LNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQ 383 (764)
T ss_pred Cce---eccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCC-CccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHH
Confidence 998 9999999999998764 4689999999999998 9999999999999986521000 0012379999
Q ss_pred HHHhhhcccCc-CCCCCCCcccc-cccccCCCCccCCCCCcchhhHHHHHHHHHHhc-------------hhhhccCCcc
Q 043901 187 RIIHYYKTKGE-ANDEESPECNR-SISFSKNDDKCGQFFPPNYAACFLFFWLLMKAL-------------PIVLGLGLKN 251 (331)
Q Consensus 187 ~li~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------------l~~~g~~~~~ 251 (331)
.|+..+.++.. +..+.+|+|.. ..+...+ ....+.+|+... +...+ ..+
T Consensus 384 lLL~~GADIn~kn~~G~TPLh~y~~~a~n~~--------------~~dIvklLis~~~~~~~~~~~~q~ll~~~d--~~~ 447 (764)
T PHA02716 384 CLISLGADITAVNCLGYTPLTSYICTAQNYM--------------YYDIIDCLISDKVLNMVKHRILQDLLIRVD--DTP 447 (764)
T ss_pred HHHHCCCCCCCcCCCCCChHHHHHHHHHhcC--------------hHHHHHHHHhCcchhhhhhhhhhhhhhccC--cch
Confidence 99999988865 56778888720 0011111 112223332210 00000 000
Q ss_pred chhhhhh--------------------hhchhhHHHHHhhh--hccCCCCchHHHHHHhcChH-----HHHHHHHhhCCc
Q 043901 252 FKISIIP--------------------YIKKVQGLKFMEKK--DQQSGRNETAILIAAKMGVA-----EMVKKILDTFPV 304 (331)
Q Consensus 252 ~~~~~~~--------------------~~~~~~~~~~l~~~--~~~~~~g~tpLh~A~~~g~~-----~~v~~Ll~~~~~ 304 (331)
..++..+ ....+....++... +..|..|+||||+|+..|+. |++++|++ .|+
T Consensus 448 ~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~-~GA 526 (764)
T PHA02716 448 CIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLS-IQY 526 (764)
T ss_pred hhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHh-CCC
Confidence 0000000 00000011112221 56688999999999999876 45599999 799
Q ss_pred cccccccCCCcHHHHHHHcCcc-----cccc
Q 043901 305 AMQDMDSEKKNLVLLAVENRQT-----SIYK 330 (331)
Q Consensus 305 ~~~~~d~~g~t~l~~A~~~~~~-----~iv~ 330 (331)
|++.+|++|+||||+|+++|+. +||+
T Consensus 527 DIN~~d~~G~TPLh~A~~~g~~~~~~~eIvk 557 (764)
T PHA02716 527 NINIPTKNGVTPLMLTMRNNRLSGHQWYIVK 557 (764)
T ss_pred CCcccCCCCCCHHHHHHHcCCccccHHHHHH
Confidence 9999999999999999999987 6665
|
|
| >PHA02791 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=256.75 Aligned_cols=197 Identities=15% Similarity=0.105 Sum_probs=156.1
Q ss_pred ccHHHH-HHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhc
Q 043901 37 ETQLYT-LQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSF 114 (331)
Q Consensus 37 ~t~~v~-Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~ 114 (331)
...+++ |++.+ . +.+ .+|.||||+|+..|+.+++++|++.|++ ++..+ |.||||+|+..|+.+++++|++.
T Consensus 11 ~~~~~~~Lis~~-a---~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~-~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~ 83 (284)
T PHA02791 11 SKQLKSFLSSKD-A---FKADVHGHSALYYAIADNNVRLVCTLLNAGAL-KNLLE--NEFPLHQAATLEDTKIVKILLFS 83 (284)
T ss_pred HHHHHHHHHhCC-C---CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCC-CcCCC--CCCHHHHHHHCCCHHHHHHHHHC
Confidence 333677 77766 2 345 7899999999999999999999999987 77654 78999999999999999999999
Q ss_pred CCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCC-ccHhHHHhcCCCcccccccchhHHHHHhhhc
Q 043901 115 NQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENG-LTRLHILASKPTAFKRGSRLGLFDRIIHYYK 193 (331)
Q Consensus 115 g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g-~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~ 193 (331)
|+++ +.+|..|.||||+|+..|+.+++++|++.|++ ++.++..| .||||+|+..++ .++++.|+..+.
T Consensus 84 Gadv---n~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gad-in~~~~~g~~TpL~~Aa~~g~-------~eivk~LL~~~~ 152 (284)
T PHA02791 84 GMDD---SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLND-------VSIVSYFLSEIP 152 (284)
T ss_pred CCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cCccCCCCCcHHHHHHHHcCC-------HHHHHHHHhcCC
Confidence 9998 99999999999999999999999999999988 88888887 589999999998 789999887643
Q ss_pred ccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhh
Q 043901 194 TKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKD 273 (331)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 273 (331)
....
T Consensus 153 ~~~d---------------------------------------------------------------------------- 156 (284)
T PHA02791 153 STFD---------------------------------------------------------------------------- 156 (284)
T ss_pred cccc----------------------------------------------------------------------------
Confidence 2110
Q ss_pred ccCCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcH-HHHHHHcCcccccc
Q 043901 274 QQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNL-VLLAVENRQTSIYK 330 (331)
Q Consensus 274 ~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~-l~~A~~~~~~~iv~ 330 (331)
...|.||||+|+..|+.+++++|++ +|++++.+|..|+|| ||+|+.+|+.++|+
T Consensus 157 --~~~g~TpLh~Aa~~g~~eiv~lLL~-~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~ 211 (284)
T PHA02791 157 --LAILLSCIHITIKNGHVDMMILLLD-YMTSTNTNNSLLFIPDIKLAIDNKDLEMLQ 211 (284)
T ss_pred --cccCccHHHHHHHcCCHHHHHHHHH-CCCCCCcccCCCCChHHHHHHHcCCHHHHH
Confidence 0135666666666666666666666 466666666666655 66666666666654
|
|
| >PHA02876 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=285.92 Aligned_cols=269 Identities=13% Similarity=0.066 Sum_probs=177.3
Q ss_pred HHH-HHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCC
Q 043901 40 LYT-LQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQA 117 (331)
Q Consensus 40 ~v~-Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~ 117 (331)
+++ |++.| . .++.+ ..|.||||+|+..|+.++|++|++.|++ ++..+..|.||||+|+..|+.+++++|++.+++
T Consensus 160 i~k~Ll~~G-a-dvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad-~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~ 236 (682)
T PHA02876 160 IAEMLLEGG-A-DVNAKDIYCITPIHYAAERGNAKMVNLLLSYGAD-VNIIALDDLSVLECAVDSKNIDTIKAIIDNRSN 236 (682)
T ss_pred HHHHHHhCC-C-CCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC-cCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Confidence 566 66776 3 35556 7899999999999999999999999988 888888999999999988888777766654433
Q ss_pred cc--------------------------ccccccCCCCcHHHHHHhcCCH-HHHHHHHHhCCcccccccCCCccHhHHHh
Q 043901 118 KD--------------------------NRQCRKNNGETILHSAISGEYF-SIAFQIMRAYPDLVNSVNENGLTRLHILA 170 (331)
Q Consensus 118 ~~--------------------------~~~~~~~~g~t~Lh~A~~~~~~-~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~ 170 (331)
+. .++..+..|.||||+|+..++. +++++|++.|++ ++.+|..|.||||+|+
T Consensus 237 ~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gad-in~~d~~g~TpLh~Aa 315 (682)
T PHA02876 237 INKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGAD-VNAKNIKGETPLYLMA 315 (682)
T ss_pred CCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCC-CCCcCCCCCCHHHHHH
Confidence 20 1267778899999999998886 588999998888 8889999999999999
Q ss_pred cCCCcccccccchhHHHHHhhhcccCc-CCCCCCCcccccccccCCCCc-c----------CCCCCcchhhH--------
Q 043901 171 SKPTAFKRGSRLGLFDRIIHYYKTKGE-ANDEESPECNRSISFSKNDDK-C----------GQFFPPNYAAC-------- 230 (331)
Q Consensus 171 ~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~~~~~~-------- 230 (331)
..|.. .+.++.|+..+.+... +..+.+|+|. ++..+... . .......+.++
T Consensus 316 ~~g~~------~~~v~~Ll~~gadin~~d~~g~TpLh~---A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~ 386 (682)
T PHA02876 316 KNGYD------TENIRTLIMLGADVNAADRLYITPLHQ---ASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRN 386 (682)
T ss_pred HhCCC------HHHHHHHHHcCCCCCCcccCCCcHHHH---HHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcC
Confidence 88742 5778888887777654 4456677765 22211100 0 00000011111
Q ss_pred -HHHHHHHHHhchhhhc---cCCccchhhhhhhhc-hhhHHHHHhhh----hccCCCCchHHHHHHhcC-hHHHHHHHHh
Q 043901 231 -FLFFWLLMKALPIVLG---LGLKNFKISIIPYIK-KVQGLKFMEKK----DQQSGRNETAILIAAKMG-VAEMVKKILD 300 (331)
Q Consensus 231 -~~~~~~l~~~~l~~~g---~~~~~~~~~~~~~~~-~~~~~~~l~~~----~~~~~~g~tpLh~A~~~g-~~~~v~~Ll~ 300 (331)
...+.+|++....... .+.+ +++.++..+ ....+++|.+. +.+|..|+||||+|+..| +.+++++|++
T Consensus 387 ~~~iv~~Ll~~gad~~~~~~~g~T--~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~ 464 (682)
T PHA02876 387 NVVIINTLLDYGADIEALSQKIGT--ALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLD 464 (682)
T ss_pred CHHHHHHHHHCCCCccccCCCCCc--hHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHH
Confidence 2233334332211111 1111 233332222 22234444443 556777888888887765 6778888887
Q ss_pred hCCccccccccCCCcHHHHHHHcC
Q 043901 301 TFPVAMQDMDSEKKNLVLLAVENR 324 (331)
Q Consensus 301 ~~~~~~~~~d~~g~t~l~~A~~~~ 324 (331)
.|++++.+|..|.||+++|+.++
T Consensus 465 -~Gad~n~~d~~g~tpl~~a~~~~ 487 (682)
T PHA02876 465 -NGADVNAINIQNQYPLLIALEYH 487 (682)
T ss_pred -CCCCCCCCCCCCCCHHHHHHHhC
Confidence 57888888888888888877654
|
|
| >PHA03100 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=277.67 Aligned_cols=233 Identities=15% Similarity=0.167 Sum_probs=194.1
Q ss_pred HHH-HHhhhCCCcceec-cCCCchhhh-----hhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHH--hcCCHHHHHH
Q 043901 40 LYT-LQQQLGKPILYIR-LGGNHGRKY-----IKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAA--LHGNMDAFLC 110 (331)
Q Consensus 40 ~v~-Ll~~~~~~~~~~~-~~g~t~Lh~-----A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~--~~~~~~~~~~ 110 (331)
+|+ |++.| .+ .+.. ..|.||||+ |+..|+.+++++|++.|++ ++..|..|.||||+|+ ..|+.+++++
T Consensus 50 ivk~Ll~~g-~~-~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~-i~~~d~~g~tpL~~A~~~~~~~~~iv~~ 126 (480)
T PHA03100 50 VVKILLDNG-AD-INSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGAN-VNAPDNNGITPLLYAISKKSNSYSIVEY 126 (480)
T ss_pred HHHHHHHcC-CC-CCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCC-CCCCCCCCCchhhHHHhcccChHHHHHH
Confidence 444 44444 33 4445 788999999 9999999999999999998 7999999999999999 9999999999
Q ss_pred HHhcCCCccccccccCCCCcHHHHHHhcC--CHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHH
Q 043901 111 LRSFNQAKDNRQCRKNNGETILHSAISGE--YFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRI 188 (331)
Q Consensus 111 Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~--~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~l 188 (331)
|++.|+++ +.++..|.||||+|+..+ +.+++++|++.|++ ++.++..|.||||+|+..++ .++++.|
T Consensus 127 Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~d-in~~d~~g~tpL~~A~~~~~-------~~iv~~L 195 (480)
T PHA03100 127 LLDNGANV---NIKNSDGENLLHLYLESNKIDLKILKLLIDKGVD-INAKNRYGYTPLHIAVEKGN-------IDVIKFL 195 (480)
T ss_pred HHHcCCCC---CccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCC-cccccCCCCCHHHHHHHhCC-------HHHHHHH
Confidence 99999998 999999999999999999 99999999999998 99999999999999999998 7999999
Q ss_pred HhhhcccCcCC-CCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhch--hhH
Q 043901 189 IHYYKTKGEAN-DEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKK--VQG 265 (331)
Q Consensus 189 i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~--~~~ 265 (331)
+..+.+..... .+..+.+. .+ +++.++..+. .+.
T Consensus 196 l~~ga~~~~~~~~~~~~~~~--------------------~t-----------------------~l~~a~~~~~~~~~i 232 (480)
T PHA03100 196 LDNGADINAGDIETLLFTIF--------------------ET-----------------------PLHIAACYNEITLEV 232 (480)
T ss_pred HHcCCCccCCCCCCCcHHHH--------------------Hh-----------------------HHHHHHHhCcCcHHH
Confidence 99887765322 22111110 00 1223334444 555
Q ss_pred HHHHhhh----hccCCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHHHcCcccccc
Q 043901 266 LKFMEKK----DQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYK 330 (331)
Q Consensus 266 ~~~l~~~----~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~ 330 (331)
+++|.+. +.+|..|.||||+|+..|+.+++++|++ .|+|++.+|..|+||+++|+++++.++++
T Consensus 233 v~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~-~gad~n~~d~~g~tpl~~A~~~~~~~iv~ 300 (480)
T PHA03100 233 VNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLD-LGANPNLVNKYGDTPLHIAILNNNKEIFK 300 (480)
T ss_pred HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCcHHHHHHHhCCHHHHH
Confidence 5655554 5678899999999999999999999999 79999999999999999999999998876
|
|
| >PHA02946 ankyin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=266.01 Aligned_cols=301 Identities=11% Similarity=0.034 Sum_probs=210.5
Q ss_pred HHHHHH--hcCCHHHHHHHHHcCCccccccccCCccH-----------HHH-HHhhhCCCcceec-cCCCchhhhhhccC
Q 043901 5 SLSKFA--VRGQWDNIVQAYENNPMSREAKLTNLETQ-----------LYT-LQQQLGKPILYIR-LGGNHGRKYIKPLG 69 (331)
Q Consensus 5 ~L~~a~--~~g~~~~~~~ll~~~~~~~~~~~~~~~t~-----------~v~-Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g 69 (331)
.||-++ ..++.+.++.++..+.+. +.....|.|| +++ |++.| .+ ++.+ ..|.||||+|+..+
T Consensus 40 ~Lh~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~G~TpLh~Aa~~g~~eiv~lLL~~G-Ad-in~~d~~g~TpLh~A~~~~ 116 (446)
T PHA02946 40 ILHAYCGIKGLDERFVEELLHRGYSP-NETDDDGNYPLHIASKINNNRIVAMLLTHG-AD-PNACDKQHKTPLYYLSGTD 116 (446)
T ss_pred HHHHHHHhcCCCHHHHHHHHHCcCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCc-CC-CCCCCCCCCCHHHHHHHcC
Confidence 455443 344566777777766553 3444555777 888 88887 44 4555 88889999888655
Q ss_pred --CHHHHHHHHhcCcccccc-cCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcC--CHHHH
Q 043901 70 --NEAMCHCTASKDRELISV-RNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGE--YFSIA 144 (331)
Q Consensus 70 --~~~~v~~Ll~~~~~~~~~-~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~--~~~~~ 144 (331)
..+++++|++.|++ ++. .|..|.|||| |+..++.+++++|++.|+++ +.+|..|.||||+|+..+ +.+++
T Consensus 117 ~~~~e~v~lLl~~Gad-in~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~---~~~d~~G~t~Lh~A~~~~~~~~~~v 191 (446)
T PHA02946 117 DEVIERINLLVQYGAK-INNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEA---RIVDKFGKNHIHRHLMSDNPKASTI 191 (446)
T ss_pred CchHHHHHHHHHcCCC-cccccCCCCCcHHH-HHHCCChHHHHHHHhccccc---cccCCCCCCHHHHHHHhcCCCHHHH
Confidence 47888888888887 664 6788888887 56678888888888888888 888888889998877654 46888
Q ss_pred HHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccC-cCCCCCCCcccccccccCCCCc-cCCC
Q 043901 145 FQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKG-EANDEESPECNRSISFSKNDDK-CGQF 222 (331)
Q Consensus 145 ~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~ 222 (331)
++|++.|++ ++.+|.+|+||||+|+..+.. ..++++.++. +.++. .+..+.+|+|. ++..++.. ....
T Consensus 192 ~~Ll~~Gad-in~~d~~G~TpLH~Aa~~~~~-----~~~iv~lLl~-gadin~~d~~G~TpLh~---A~~~~~~~~~~~~ 261 (446)
T PHA02946 192 SWMMKLGIS-PSKPDHDGNTPLHIVCSKTVK-----NVDIINLLLP-STDVNKQNKFGDSPLTL---LIKTLSPAHLINK 261 (446)
T ss_pred HHHHHcCCC-CcccCCCCCCHHHHHHHcCCC-----cHHHHHHHHc-CCCCCCCCCCCCCHHHH---HHHhCChHHHHHH
Confidence 888888887 888888889999988887521 1567777774 45544 35677788875 44333211 0000
Q ss_pred CCcc----hhhHHHHHHH----HHHhchhhhcc--CCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChH
Q 043901 223 FPPN----YAACFLFFWL----LMKALPIVLGL--GLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVA 292 (331)
Q Consensus 223 ~~~~----~~~~~~~~~~----l~~~~l~~~g~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~ 292 (331)
.... ....+++..+ -....+...|. +.+ ++++++..+..+.+++|.+. +..|.||||+|+..|+.
T Consensus 262 Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~T--pLh~Aa~~g~~eivk~Ll~~---~~~~~t~L~~A~~~~~~ 336 (446)
T PHA02946 262 LLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDST--DFKMAVEVGSIRCVKYLLDN---DIICEDAMYYAVLSEYE 336 (446)
T ss_pred HHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCC--HHHHHHHcCCHHHHHHHHHC---CCccccHHHHHHHhCHH
Confidence 0000 0000111000 00011222222 223 57888899999999999885 55799999999999999
Q ss_pred HHHHHHHhhCCccccccccCCCcHHHHHHHcCcccccc
Q 043901 293 EMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYK 330 (331)
Q Consensus 293 ~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~ 330 (331)
+++++|+. +|++++.. ..|.||+|+|+++++.++++
T Consensus 337 ~~v~~Ll~-~ga~~n~~-~~G~t~l~~a~~~~~~~~~~ 372 (446)
T PHA02946 337 TMVDYLLF-NHFSVDSV-VNGHTCMSECVRLNNPVILS 372 (446)
T ss_pred HHHHHHHH-CCCCCCCc-cccccHHHHHHHcCCHHHHH
Confidence 99999999 79999986 58999999999999999876
|
|
| >PHA03095 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=274.72 Aligned_cols=261 Identities=13% Similarity=0.099 Sum_probs=184.4
Q ss_pred HHH-HHhhhCCCcceec-cCCCchhhhhhccC---CHHHHHHHHhcCcccccccCCCCCcHHHHHHhcC-CHHHHHHHHh
Q 043901 40 LYT-LQQQLGKPILYIR-LGGNHGRKYIKPLG---NEAMCHCTASKDRELISVRNNDSETPLFLAALHG-NMDAFLCLRS 113 (331)
Q Consensus 40 ~v~-Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g---~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~-~~~~~~~Ll~ 113 (331)
+|+ |++.| .+ ++.+ ..|.||||+|+..| +.+++++|++.|++ +|.++..|.||||+|+..| ..+++++|++
T Consensus 29 ~v~~Ll~~g-a~-vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gad-in~~~~~g~TpLh~A~~~~~~~~iv~lLl~ 105 (471)
T PHA03095 29 EVRRLLAAG-AD-VNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGAD-VNAPERCGFTPLHLYLYNATTLDVIKLLIK 105 (471)
T ss_pred HHHHHHHcC-CC-cccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCcHHHHHHHHH
Confidence 566 66666 33 4555 77888888888777 78888888888887 8888888888888888888 5888888888
Q ss_pred cCCCccccccccCCCCcHHHHHH--hcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhh
Q 043901 114 FNQAKDNRQCRKNNGETILHSAI--SGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHY 191 (331)
Q Consensus 114 ~g~~~~~~~~~~~~g~t~Lh~A~--~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~ 191 (331)
.|+++ +.++..|.||||+|+ ..++.+++++|++.|++ ++.+|..|.||||+|+..+. ...++++.|+..
T Consensus 106 ~ga~i---n~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad-~~~~d~~g~tpL~~a~~~~~-----~~~~iv~~Ll~~ 176 (471)
T PHA03095 106 AGADV---NAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGAD-VNALDLYGMTPLAVLLKSRN-----ANVELLRLLIDA 176 (471)
T ss_pred cCCCC---CCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCC-----CCHHHHHHHHHc
Confidence 88887 888888888888888 45677888888888887 88888888888888777652 125777888877
Q ss_pred hcccCc-CCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhh---ccCCccchhhhhhhhchhh--H
Q 043901 192 YKTKGE-ANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVL---GLGLKNFKISIIPYIKKVQ--G 265 (331)
Q Consensus 192 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---g~~~~~~~~~~~~~~~~~~--~ 265 (331)
+.+... +..+.+|+|. +... .......+.++++...... ..|.+ +++.++..+... .
T Consensus 177 g~~~~~~d~~g~t~Lh~---~~~~------------~~~~~~i~~~Ll~~g~~~~~~d~~g~t--pLh~Aa~~~~~~~~~ 239 (471)
T PHA03095 177 GADVYAVDDRFRSLLHH---HLQS------------FKPRARIVRELIRAGCDPAATDMLGNT--PLHSMATGSSCKRSL 239 (471)
T ss_pred CCCCcccCCCCCCHHHH---HHHH------------CCCcHHHHHHHHHcCCCCcccCCCCCC--HHHHHHhcCCchHHH
Confidence 766543 3344555543 1100 0111233333333222111 12222 234444433321 2
Q ss_pred HHHHhhh----hccCCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHHHcCcccccc
Q 043901 266 LKFMEKK----DQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYK 330 (331)
Q Consensus 266 ~~~l~~~----~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~ 330 (331)
+..+... +.+|..|+||||+|+..|+.+++++|++ .|+|++.+|..|+||+|+|+.+|+.++++
T Consensus 240 v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~-~gad~n~~~~~g~tpl~~A~~~~~~~~v~ 307 (471)
T PHA03095 240 VLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIA-LGADINAVSSDGNTPLSLMVRNNNGRAVR 307 (471)
T ss_pred HHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHhCCHHHHH
Confidence 3333332 6778899999999999999999999999 69999999999999999999999998875
|
|
| >PHA02875 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=264.12 Aligned_cols=231 Identities=13% Similarity=0.040 Sum_probs=156.7
Q ss_pred CchhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccH-----------HHH-HHhhhCCCcceec-cCCCchhhhhhc
Q 043901 1 MEVNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQ-----------LYT-LQQQLGKPILYIR-LGGNHGRKYIKP 67 (331)
Q Consensus 1 ~~~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~-----------~v~-Ll~~~~~~~~~~~-~~g~t~Lh~A~~ 67 (331)
++..+|+.|+..|+.+.++.|++.+.+.. .....|.|| +++ |++.| ...+.. ..+.||||+|+.
T Consensus 1 ~~~~~L~~A~~~g~~~iv~~Ll~~g~~~n-~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g--a~~~~~~~~~~t~L~~A~~ 77 (413)
T PHA02875 1 MDQVALCDAILFGELDIARRLLDIGINPN-FEIYDGISPIKLAMKFRDSEAIKLLMKHG--AIPDVKYPDIESELHDAVE 77 (413)
T ss_pred CCchHHHHHHHhCCHHHHHHHHHCCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHhCC--CCccccCCCcccHHHHHHH
Confidence 36778999999999999999998764422 122233444 666 66666 223444 566667777777
Q ss_pred cCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHH
Q 043901 68 LGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQI 147 (331)
Q Consensus 68 ~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~L 147 (331)
.|+.+++++|++.|+...+..+..|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|+..|+.+++++|
T Consensus 78 ~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~---~~~~~~g~tpLh~A~~~~~~~~v~~L 154 (413)
T PHA02875 78 EGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADP---DIPNTDKFSPLHLAVMMGDIKGIELL 154 (413)
T ss_pred CCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 777777777776666534445556667777777777777777777776666 66666666777777777777777777
Q ss_pred HHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcch
Q 043901 148 MRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNY 227 (331)
Q Consensus 148 l~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (331)
++.|++ ++.+|..|.||||+|+..|+ .++++.|+..+.+..
T Consensus 155 l~~g~~-~~~~d~~g~TpL~~A~~~g~-------~eiv~~Ll~~ga~~n------------------------------- 195 (413)
T PHA02875 155 IDHKAC-LDIEDCCGCTPLIIAMAKGD-------IAICKMLLDSGANID------------------------------- 195 (413)
T ss_pred HhcCCC-CCCCCCCCCCHHHHHHHcCC-------HHHHHHHHhCCCCCC-------------------------------
Confidence 766665 66666667777777766666 566666666554432
Q ss_pred hhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCC-CchHHHHHHhcChHHHHHHHHhhCCccc
Q 043901 228 AACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGR-NETAILIAAKMGVAEMVKKILDTFPVAM 306 (331)
Q Consensus 228 ~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-g~tpLh~A~~~g~~~~v~~Ll~~~~~~~ 306 (331)
..+.. +.||+|+|+..|+.+++++|++ .|+|+
T Consensus 196 ----------------------------------------------~~~~~~~~t~l~~A~~~~~~~iv~~Ll~-~gad~ 228 (413)
T PHA02875 196 ----------------------------------------------YFGKNGCVAALCYAIENNKIDIVRLFIK-RGADC 228 (413)
T ss_pred ----------------------------------------------cCCCCCCchHHHHHHHcCCHHHHHHHHH-CCcCc
Confidence 12223 4688888999899999998888 68888
Q ss_pred ccc---ccCCCcHHHHHHHc
Q 043901 307 QDM---DSEKKNLVLLAVEN 323 (331)
Q Consensus 307 ~~~---d~~g~t~l~~A~~~ 323 (331)
+.. +.++.||+++++..
T Consensus 229 n~~~~~~~~~~t~l~~~~~~ 248 (413)
T PHA02875 229 NIMFMIEGEECTILDMICNM 248 (413)
T ss_pred chHhhcCCCchHHHHHHHhh
Confidence 765 56788888887654
|
|
| >PHA02989 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=266.24 Aligned_cols=271 Identities=12% Similarity=0.089 Sum_probs=191.2
Q ss_pred hHHHHHHhc---CCHHHHHHHHHcCCccccccccCCccH-------------HHH-HHhhhCCCcceeccCCCchhhhhh
Q 043901 4 NSLSKFAVR---GQWDNIVQAYENNPMSREAKLTNLETQ-------------LYT-LQQQLGKPILYIRLGGNHGRKYIK 66 (331)
Q Consensus 4 ~~L~~a~~~---g~~~~~~~ll~~~~~~~~~~~~~~~t~-------------~v~-Ll~~~~~~~~~~~~~g~t~Lh~A~ 66 (331)
..||..+.. .+.+.++.|++.+.+.... ..+.++ +|+ |++.| .+ ++.+..+.||||.|+
T Consensus 2 ~~l~~y~~~~~~~~~~~v~~LL~~GadvN~~--~~g~t~l~~~~~~~~~~~~iv~~Ll~~G-Ad-vn~~~~~~tpL~~a~ 77 (494)
T PHA02989 2 SSLYEYILYSDTVDKNALEFLLRTGFDVNEE--YRGNSILLLYLKRKDVKIKIVKLLIDNG-AD-VNYKGYIETPLCAVL 77 (494)
T ss_pred cHHHHHHHcCCcCcHHHHHHHHHcCCCcccc--cCCCCHHHHHHhcCCCChHHHHHHHHcC-CC-ccCCCCCCCcHHHHH
Confidence 356666653 6788888888776654322 222222 788 88887 33 444545688888877
Q ss_pred ccC------CHHHHHHHHhcCcccccccCCCCCcHHHHHHhc---CCHHHHHHHHhcCCCccccc-cccCCCCcHHHHHH
Q 043901 67 PLG------NEAMCHCTASKDRELISVRNNDSETPLFLAALH---GNMDAFLCLRSFNQAKDNRQ-CRKNNGETILHSAI 136 (331)
Q Consensus 67 ~~g------~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~---~~~~~~~~Ll~~g~~~~~~~-~~~~~g~t~Lh~A~ 136 (331)
..+ +.+++++|+++|++ +|.+|..|.||||.|+.. ++.+++++|+++|+++ + .+|..|.||||+|+
T Consensus 78 ~~~~~~~~~~~~iv~~Ll~~Gad-in~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadi---n~~~d~~g~tpLh~a~ 153 (494)
T PHA02989 78 RNREITSNKIKKIVKLLLKFGAD-INLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINV---NDVKNSRGYNLLHMYL 153 (494)
T ss_pred hccCcchhhHHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCc---ccccCCCCCCHHHHHH
Confidence 543 46788888888887 888888888888877655 5678888888888876 4 57788888888876
Q ss_pred hc--CCHHHHHHHHHhCCccccc-ccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCC-CCCCCcccccccc
Q 043901 137 SG--EYFSIAFQIMRAYPDLVNS-VNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEAN-DEESPECNRSISF 212 (331)
Q Consensus 137 ~~--~~~~~~~~Ll~~~~~~~~~-~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~-~~~~~~~~~~~~~ 212 (331)
.. ++.+++++|+++|++ ++. .+..|.||||.|+..+.. ....++++.|+..+.++.... ...++++. +.
T Consensus 154 ~~~~~~~~iv~~Ll~~Gad-i~~~~~~~g~tpL~~a~~~~~~---~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~---~~ 226 (494)
T PHA02989 154 ESFSVKKDVIKILLSFGVN-LFEKTSLYGLTPMNIYLRNDID---VISIKVIKYLIKKGVNIETNNNGSESVLES---FL 226 (494)
T ss_pred HhccCCHHHHHHHHHcCCC-ccccccccCCChHHHHHhcccc---cccHHHHHHHHhCCCCccccCCccccHHHH---HH
Confidence 54 578888888888887 666 577888888888776521 112688888888887765422 22333222 00
Q ss_pred cCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhh---hccCCCCchHHHHHHhc
Q 043901 213 SKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKK---DQQSGRNETAILIAAKM 289 (331)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~g~tpLh~A~~~ 289 (331)
.... . ...+..+.++++... +.+|..|+||||+|+..
T Consensus 227 ~~~~--------~--------------------------------~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~ 266 (494)
T PHA02989 227 DNNK--------I--------------------------------LSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKV 266 (494)
T ss_pred Hhch--------h--------------------------------hcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHh
Confidence 0000 0 000111112222221 67788999999999999
Q ss_pred ChHHHHHHHHhhCCccccccccCCCcHHHHHHHcCcccccc
Q 043901 290 GVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYK 330 (331)
Q Consensus 290 g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~ 330 (331)
|+.+++++|++ .|+|++.+|..|+||||+|+++++.++|+
T Consensus 267 ~~~~~v~~LL~-~Gadin~~d~~G~TpL~~A~~~~~~~iv~ 306 (494)
T PHA02989 267 DNYEAFNYLLK-LGDDIYNVSKDGDTVLTYAIKHGNIDMLN 306 (494)
T ss_pred cCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHH
Confidence 99999999999 69999999999999999999999999886
|
|
| >PHA02946 ankyin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=259.34 Aligned_cols=269 Identities=13% Similarity=0.088 Sum_probs=207.3
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCc-----cccccc-cCC-ccHHHH-HHhhhCCCcceec-cCCCchhhhhhccCCHHHHH
Q 043901 5 SLSKFAVRGQWDNIVQAYENNPM-----SREAKL-TNL-ETQLYT-LQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCH 75 (331)
Q Consensus 5 ~L~~a~~~g~~~~~~~ll~~~~~-----~~~~~~-~~~-~t~~v~-Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~ 75 (331)
+++.++..++.+.++.+++.... .++... ..+ ...+++ |++.| .+ ++.+ ..|.||||+|+..|+.++++
T Consensus 12 sl~~~~~~~n~~~~~~~l~~~~~~g~~~~Lh~~~~~~~~~~~iv~~Ll~~G-ad-vn~~d~~G~TpLh~Aa~~g~~eiv~ 89 (446)
T PHA02946 12 SLYAKYNSKNLDVFRNMLQAIEPSGNYHILHAYCGIKGLDERFVEELLHRG-YS-PNETDDDGNYPLHIASKINNNRIVA 89 (446)
T ss_pred HHHHHHccCcHHHHHHHHhccCCCCCChHHHHHHHhcCCCHHHHHHHHHCc-CC-CCccCCCCCCHHHHHHHcCCHHHHH
Confidence 57889999999999999975322 111111 122 334899 99998 44 5566 89999999999999999999
Q ss_pred HHHhcCcccccccCCCCCcHHHHHHhcCC--HHHHHHHHhcCCCcccccc-ccCCCCcHHHHHHhcCCHHHHHHHHHhCC
Q 043901 76 CTASKDRELISVRNNDSETPLFLAALHGN--MDAFLCLRSFNQAKDNRQC-RKNNGETILHSAISGEYFSIAFQIMRAYP 152 (331)
Q Consensus 76 ~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~--~~~~~~Ll~~g~~~~~~~~-~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~ 152 (331)
+|+++|++ +|.+|..|.||||+|+..++ .+++++|+++|+++ +. .+..|.|||| |+..++.+++++|++.|+
T Consensus 90 lLL~~GAd-in~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadi---n~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~ga 164 (446)
T PHA02946 90 MLLTHGAD-PNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKI---NNSVDEEGCGPLL-ACTDPSERVFKKIMSIGF 164 (446)
T ss_pred HHHHCcCC-CCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCc---ccccCCCCCcHHH-HHHCCChHHHHHHHhccc
Confidence 99999998 99999999999999988764 78999999999998 74 6889999998 566799999999999999
Q ss_pred cccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCc-CCCCCCCcccccccccCCCCccCCCCCcchhhHH
Q 043901 153 DLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGE-ANDEESPECNRSISFSKNDDKCGQFFPPNYAACF 231 (331)
Q Consensus 153 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (331)
+ ++.+|..|+||||+|+..++. ..++++.|+..+.+... +..+.+|+|. |+..+.. ..
T Consensus 165 d-~~~~d~~G~t~Lh~A~~~~~~-----~~~~v~~Ll~~Gadin~~d~~G~TpLH~---Aa~~~~~------------~~ 223 (446)
T PHA02946 165 E-ARIVDKFGKNHIHRHLMSDNP-----KASTISWMMKLGISPSKPDHDGNTPLHI---VCSKTVK------------NV 223 (446)
T ss_pred c-ccccCCCCCCHHHHHHHhcCC-----CHHHHHHHHHcCCCCcccCCCCCCHHHH---HHHcCCC------------cH
Confidence 8 999999999999999876541 14788999999888764 6678888875 2222111 11
Q ss_pred HHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcCh-HHHHHHHHhhCCccc----
Q 043901 232 LFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGV-AEMVKKILDTFPVAM---- 306 (331)
Q Consensus 232 ~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~-~~~v~~Ll~~~~~~~---- 306 (331)
..+.+++. |. .. +.+|..|.||||+|++.++ .+++++|++ .|.++
T Consensus 224 ~iv~lLl~------ga-----------di------------n~~d~~G~TpLh~A~~~~~~~~~~~~Ll~-~g~~~~~~~ 273 (446)
T PHA02946 224 DIINLLLP------ST-----------DV------------NKQNKFGDSPLTLLIKTLSPAHLINKLLS-TSNVITDQT 273 (446)
T ss_pred HHHHHHHc------CC-----------CC------------CCCCCCCCCHHHHHHHhCChHHHHHHHHh-CCCCCCCcH
Confidence 22222211 10 00 6778899999999999988 589999998 46542
Q ss_pred ----------------ccc-ccCCCcHHHHHHHcCccccccC
Q 043901 307 ----------------QDM-DSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 307 ----------------~~~-d~~g~t~l~~A~~~~~~~iv~l 331 (331)
+.. +..|+||||+|+++|+.++|++
T Consensus 274 ~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~ 315 (446)
T PHA02946 274 VNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKY 315 (446)
T ss_pred HHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHH
Confidence 111 2357899999999999999874
|
|
| >PHA02798 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-34 Score=263.21 Aligned_cols=277 Identities=12% Similarity=0.103 Sum_probs=206.9
Q ss_pred CchhHHHHHHhcCC---HHHHHHHHHcCCccccc--------cc-cCC-ccHHHH-HHhhhCCCcceec-cCCCchhhhh
Q 043901 1 MEVNSLSKFAVRGQ---WDNIVQAYENNPMSREA--------KL-TNL-ETQLYT-LQQQLGKPILYIR-LGGNHGRKYI 65 (331)
Q Consensus 1 ~~~~~L~~a~~~g~---~~~~~~ll~~~~~~~~~--------~~-~~~-~t~~v~-Ll~~~~~~~~~~~-~~g~t~Lh~A 65 (331)
|+...||..+...+ .+.|+.++......... .. ... +..+|+ |++.| .+ ++.. ..|.||||.|
T Consensus 1 ~~~~~l~~y~~~~~~~~~~~v~~ll~~~~~~~~~~~~~~~~~yl~~~~~~~~iv~~Ll~~G-ad-vn~~d~~g~TpL~~~ 78 (489)
T PHA02798 1 MDIDNLYNYITFSDNVKLSTVKLLIKSCNPNEIVNEYSIFQKYLQRDSPSTDIVKLFINLG-AN-VNGLDNEYSTPLCTI 78 (489)
T ss_pred CchhhhHHHeeecCcccHHHHHHHHhcCChhhhcccchHHHHHHhCCCCCHHHHHHHHHCC-CC-CCCCCCCCCChHHHH
Confidence 46678888877554 55777777643211100 01 111 334999 99998 44 5555 8999999998
Q ss_pred hcc-----CCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcC---CHHHHHHHHhcCCCccccccccCCCCcHHHHHHh
Q 043901 66 KPL-----GNEAMCHCTASKDRELISVRNNDSETPLFLAALHG---NMDAFLCLRSFNQAKDNRQCRKNNGETILHSAIS 137 (331)
Q Consensus 66 ~~~-----g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~---~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~ 137 (331)
+.. +..+++++|+++|++ +|.+|..|.||||+|+..+ +.+++++|+++|+++ +.+|..|.||||+|+.
T Consensus 79 ~~n~~~~~~~~~iv~~Ll~~Gad-iN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadv---n~~d~~g~tpL~~a~~ 154 (489)
T PHA02798 79 LSNIKDYKHMLDIVKILIENGAD-INKKNSDGETPLYCLLSNGYINNLEILLFMIENGADT---TLLDKDGFTMLQVYLQ 154 (489)
T ss_pred HHhHHhHHhHHHHHHHHHHCCCC-CCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCc---cccCCCCCcHHHHHHH
Confidence 864 678999999999998 9999999999999999986 689999999999999 9999999999999999
Q ss_pred cCC---HHHHHHHHHhCCccccccc-CCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcC-CCCCCCcccccccc
Q 043901 138 GEY---FSIAFQIMRAYPDLVNSVN-ENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEA-NDEESPECNRSISF 212 (331)
Q Consensus 138 ~~~---~~~~~~Ll~~~~~~~~~~~-~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~~~~~~~~~~~~~ 212 (331)
.++ .+++++|++.|++ ++..+ ..|.||||.++..+.. ....++++.|+..+.+.... ..+.++.+.
T Consensus 155 ~~~~~~~~vv~~Ll~~gad-in~~~~~~~~t~Lh~~~~~~~~---~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~----- 225 (489)
T PHA02798 155 SNHHIDIEIIKLLLEKGVD-INTHNNKEKYDTLHCYFKYNID---RIDADILKLFVDNGFIINKENKSHKKKFME----- 225 (489)
T ss_pred cCCcchHHHHHHHHHhCCC-cccccCcCCCcHHHHHHHhccc---cCCHHHHHHHHHCCCCcccCCccccchHHH-----
Confidence 988 9999999999998 88774 5799999998765421 11278999999998776542 122222110
Q ss_pred cCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhh---hccCCCCchHHHHHHhc
Q 043901 213 SKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKK---DQQSGRNETAILIAAKM 289 (331)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~g~tpLh~A~~~ 289 (331)
.+..++ ..........+.++... +.+|..|+||||+|+..
T Consensus 226 --------------------~l~~l~-----------------~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~ 268 (489)
T PHA02798 226 --------------------YLNSLL-----------------YDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSH 268 (489)
T ss_pred --------------------HHHHHH-----------------hhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHc
Confidence 000000 00000111112222221 67788999999999999
Q ss_pred ChHHHHHHHHhhCCccccccccCCCcHHHHHHHcCcccccc
Q 043901 290 GVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYK 330 (331)
Q Consensus 290 g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~ 330 (331)
|+.+++++|++ .|+|++.+|..|+|||++|+++++.++++
T Consensus 269 ~~~~~v~~LL~-~GAdin~~d~~G~TpL~~A~~~~~~~iv~ 308 (489)
T PHA02798 269 NNRKIFEYLLQ-LGGDINIITELGNTCLFTAFENESKFIFN 308 (489)
T ss_pred CcHHHHHHHHH-cCCcccccCCCCCcHHHHHHHcCcHHHHH
Confidence 99999999999 79999999999999999999999988875
|
|
| >PHA02791 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=243.16 Aligned_cols=183 Identities=15% Similarity=0.135 Sum_probs=156.9
Q ss_pred HHH-HHhhhCCCcceeccCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCc
Q 043901 40 LYT-LQQQLGKPILYIRLGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAK 118 (331)
Q Consensus 40 ~v~-Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~ 118 (331)
+++ |++.+ .+ .+. .+|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..|+.+++++|+++|+++
T Consensus 45 iv~~Ll~~g-a~-~n~-~d~~TpLh~Aa~~g~~eiV~lLL~~Gad-vn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadi 120 (284)
T PHA02791 45 LVCTLLNAG-AL-KNL-LENEFPLHQAATLEDTKIVKILLFSGMD-DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL 120 (284)
T ss_pred HHHHHHHCc-CC-CcC-CCCCCHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence 566 66665 22 222 3578999999999999999999999988 9999999999999999999999999999999998
Q ss_pred cccccccCCCC-cHHHHHHhcCCHHHHHHHHHhCCccccccc-CCCccHhHHHhcCCCcccccccchhHHHHHhhhcccC
Q 043901 119 DNRQCRKNNGE-TILHSAISGEYFSIAFQIMRAYPDLVNSVN-ENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKG 196 (331)
Q Consensus 119 ~~~~~~~~~g~-t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~-~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~ 196 (331)
+.++..|+ ||||+|+..|+.+++++|+++++. . .| ..|.||||+|+..|+ .++++.|+..+++..
T Consensus 121 ---n~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~-~--~d~~~g~TpLh~Aa~~g~-------~eiv~lLL~~gAd~n 187 (284)
T PHA02791 121 ---MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS-T--FDLAILLSCIHITIKNGH-------VDMMILLLDYMTSTN 187 (284)
T ss_pred ---CccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCc-c--cccccCccHHHHHHHcCC-------HHHHHHHHHCCCCCC
Confidence 88888885 899999999999999999998764 2 23 358999999999999 899999998886533
Q ss_pred cCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccC
Q 043901 197 EANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQS 276 (331)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 276 (331)
.++
T Consensus 188 -----------------------------------------------------------------------------~~d 190 (284)
T PHA02791 188 -----------------------------------------------------------------------------TNN 190 (284)
T ss_pred -----------------------------------------------------------------------------ccc
Confidence 234
Q ss_pred CCCchH-HHHHHhcChHHHHHHHHhhCCccccccccCCCcHHH
Q 043901 277 GRNETA-ILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVL 318 (331)
Q Consensus 277 ~~g~tp-Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~ 318 (331)
..|.|| ||+|+..|+.++|++|++ +|++++.+|.+| ||++
T Consensus 191 ~~g~t~~L~~Aa~~~~~e~v~lLl~-~Ga~in~~~~~~-~~l~ 231 (284)
T PHA02791 191 SLLFIPDIKLAIDNKDLEMLQALFK-YDINIYSVNLEN-VLLD 231 (284)
T ss_pred CCCCChHHHHHHHcCCHHHHHHHHH-CCCCCccCcccC-ccCC
Confidence 567876 999999999999999999 799999999854 7663
|
|
| >PHA02878 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=259.48 Aligned_cols=157 Identities=16% Similarity=0.161 Sum_probs=99.6
Q ss_pred HHHhcCcccccccCCC-CCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcc
Q 043901 76 CTASKDRELISVRNND-SETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDL 154 (331)
Q Consensus 76 ~Ll~~~~~~~~~~d~~-g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~ 154 (331)
+|++.|++ ++..+.. |.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|++.|++
T Consensus 152 ~Ll~~gad-in~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~---n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~- 226 (477)
T PHA02878 152 LLLSYGAD-INMKDRHKGNTALHYATENKDQRLTELLLSYGANV---NIPDKTNNSPLHHAVKHYNKPIVHILLENGAS- 226 (477)
T ss_pred HHHHcCCC-CCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCC---CCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCC-
Confidence 33333443 4555555 555555555555555555555555555 55555555555555555555555555555555
Q ss_pred cccccCCCccHhHHHhcC-CCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHH
Q 043901 155 VNSVNENGLTRLHILASK-PTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLF 233 (331)
Q Consensus 155 ~~~~~~~g~t~l~~A~~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (331)
++.+|..|+||||+|+.. ++ .++++.|+..+.++.
T Consensus 227 in~~d~~g~TpLh~A~~~~~~-------~~iv~~Ll~~gadvn------------------------------------- 262 (477)
T PHA02878 227 TDARDKCGNTPLHISVGYCKD-------YDILKLLLEHGVDVN------------------------------------- 262 (477)
T ss_pred CCCCCCCCCCHHHHHHHhcCC-------HHHHHHHHHcCCCCC-------------------------------------
Confidence 555555555555555543 22 455555554443322
Q ss_pred HHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccC-CCCchHHHHHHhcChHHHHHHHHhhCCccccccccC
Q 043901 234 FWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQS-GRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSE 312 (331)
Q Consensus 234 ~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~ 312 (331)
.++ ..|.||||+| .++.+++++|++ .|+|++.+|..
T Consensus 263 ----------------------------------------~~~~~~g~TpLh~A--~~~~~~v~~Ll~-~gadin~~d~~ 299 (477)
T PHA02878 263 ----------------------------------------AKSYILGLTALHSS--IKSERKLKLLLE-YGADINSLNSY 299 (477)
T ss_pred ----------------------------------------ccCCCCCCCHHHHH--ccCHHHHHHHHH-CCCCCCCcCCC
Confidence 223 3699999999 567899999999 79999999999
Q ss_pred CCcHHHHHHHcC
Q 043901 313 KKNLVLLAVENR 324 (331)
Q Consensus 313 g~t~l~~A~~~~ 324 (331)
|+||||+|++.+
T Consensus 300 g~TpL~~A~~~~ 311 (477)
T PHA02878 300 KLTPLSSAVKQY 311 (477)
T ss_pred CCCHHHHHHHHc
Confidence 999999999854
|
|
| >KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=218.69 Aligned_cols=183 Identities=20% Similarity=0.183 Sum_probs=162.4
Q ss_pred CCchhhhhhccCCHHHHHHHHhcCcccccccCC-CCCcHHHHHHhcCCHHHHHHHHh-cCCCccccccccCCCCcHHHHH
Q 043901 58 GNHGRKYIKPLGNEAMCHCTASKDRELISVRNN-DSETPLFLAALHGNMDAFLCLRS-FNQAKDNRQCRKNNGETILHSA 135 (331)
Q Consensus 58 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~-~g~tpLh~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~~~g~t~Lh~A 135 (331)
+.++.+.+++.....-+.-+++..+..++.++. +|+|||||||..|+.+++.+|++ .+..+ +.+|..|+||||+|
T Consensus 3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~---ddkDdaGWtPlhia 79 (226)
T KOG4412|consen 3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKP---DDKDDAGWTPLHIA 79 (226)
T ss_pred ccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCC---CCccccCCchhhhh
Confidence 457788888888888888899888856888877 99999999999999999999996 34544 99999999999999
Q ss_pred HhcCCHHHHHHHHHh-CCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccC
Q 043901 136 ISGEYFSIAFQIMRA-YPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSK 214 (331)
Q Consensus 136 ~~~~~~~~~~~Ll~~-~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (331)
+..|+.++++-|+.+ +++ ++..+..|+|+||||+-.+. +++.+.|+..+..+
T Consensus 80 ~s~g~~evVk~Ll~r~~ad-vna~tn~G~T~LHyAagK~r-------~eIaqlLle~ga~i------------------- 132 (226)
T KOG4412|consen 80 ASNGNDEVVKELLNRSGAD-VNATTNGGQTCLHYAAGKGR-------LEIAQLLLEKGALI------------------- 132 (226)
T ss_pred hhcCcHHHHHHHhcCCCCC-cceecCCCcceehhhhcCCh-------hhHHHHHHhcCCCC-------------------
Confidence 999999999999999 665 99999999999999999998 89999998887442
Q ss_pred CCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHH
Q 043901 215 NDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEM 294 (331)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~ 294 (331)
+.+|+.|.||||-|+..|.+++
T Consensus 133 ----------------------------------------------------------~~kD~~~qtplHRAAavGklkv 154 (226)
T KOG4412|consen 133 ----------------------------------------------------------RIKDKQGQTPLHRAAAVGKLKV 154 (226)
T ss_pred ----------------------------------------------------------cccccccCchhHHHHhccchhh
Confidence 3467789999999999999999
Q ss_pred HHHHHhhCCccccccccCCCcHHHHHHHcCccccc
Q 043901 295 VKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIY 329 (331)
Q Consensus 295 v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv 329 (331)
+++|+. .|+.+|.+|+.|+||||.|.-.++.++.
T Consensus 155 ie~Li~-~~a~~n~qDk~G~TpL~~al~e~~~d~a 188 (226)
T KOG4412|consen 155 IEYLIS-QGAPLNTQDKYGFTPLHHALAEGHPDVA 188 (226)
T ss_pred HHHHHh-cCCCCCcccccCccHHHHHHhccCchHH
Confidence 999999 6899999999999999999777777653
|
|
| >KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=254.01 Aligned_cols=208 Identities=17% Similarity=0.140 Sum_probs=182.8
Q ss_pred hHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcCc
Q 043901 4 NSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKDR 82 (331)
Q Consensus 4 ~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~ 82 (331)
..++.|+..|+++.++++++... .+ ++.. .+|.|+||+|+.+++.+++++|+++|+
T Consensus 46 ~~~v~A~q~G~l~~v~~lve~~g----------------------~~-v~~~D~~g~tlLHWAAiNNrl~v~r~li~~ga 102 (600)
T KOG0509|consen 46 DDIVKATQYGELETVKELVESEG----------------------ES-VNNPDREGVTLLHWAAINNRLDVARYLISHGA 102 (600)
T ss_pred hhhhhHhhcchHHHHHHHHhhcC----------------------cC-CCCCCcCCccceeHHHHcCcHHHHHHHHHcCC
Confidence 46788999999999999988731 12 3344 789999999999999999999999999
Q ss_pred ccccccC-CCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCC
Q 043901 83 ELISVRN-NDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNEN 161 (331)
Q Consensus 83 ~~~~~~d-~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~ 161 (331)
+ +|... ..|.||||+|+++|+..++.+|+++||++ +.+|.+|.+|||.|++.|+.-++-||+.++++ ++.+|.+
T Consensus 103 d-vn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdp---t~~D~~G~~~lHla~~~~~~~~vayll~~~~d-~d~~D~~ 177 (600)
T KOG0509|consen 103 D-VNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADP---TLKDKQGLTPLHLAAQFGHTALVAYLLSKGAD-IDLRDNN 177 (600)
T ss_pred C-ccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCC---ceecCCCCcHHHHHHHhCchHHHHHHHHhccc-CCCcCCC
Confidence 8 99988 66889999999999999999999999999 99999999999999999999999999999977 9999999
Q ss_pred CccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhc
Q 043901 162 GLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKAL 241 (331)
Q Consensus 162 g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (331)
|+||||+|+.+++. ..+..|+..++.+.
T Consensus 178 grTpLmwAaykg~~-------~~v~~LL~f~a~~~--------------------------------------------- 205 (600)
T KOG0509|consen 178 GRTPLMWAAYKGFA-------LFVRRLLKFGASLL--------------------------------------------- 205 (600)
T ss_pred CCCHHHHHHHhccc-------HHHHHHHHhccccc---------------------------------------------
Confidence 99999999999983 33777777665543
Q ss_pred hhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHH
Q 043901 242 PIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAV 321 (331)
Q Consensus 242 l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~ 321 (331)
-..+..|+||||+|+..|+..++.++++ .|.+.+.+|.+|+||+++|.
T Consensus 206 -------------------------------~~d~~~g~TpLHwa~~~gN~~~v~Ll~~-g~~~~d~~~~~g~tp~~LA~ 253 (600)
T KOG0509|consen 206 -------------------------------LTDDNHGNTPLHWAVVGGNLTAVKLLLE-GGADLDKTNTNGKTPFDLAQ 253 (600)
T ss_pred -------------------------------ccccccCCchHHHHHhcCCcceEehhhh-cCCcccccccCCCCHHHHHH
Confidence 1224679999999999999999994445 79999999999999999997
Q ss_pred Hc
Q 043901 322 EN 323 (331)
Q Consensus 322 ~~ 323 (331)
+.
T Consensus 254 ~~ 255 (600)
T KOG0509|consen 254 ER 255 (600)
T ss_pred Hh
Confidence 76
|
|
| >PHA02874 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=255.79 Aligned_cols=236 Identities=14% Similarity=0.113 Sum_probs=194.7
Q ss_pred ccCCccHHHH-HHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHH
Q 043901 33 LTNLETQLYT-LQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLC 110 (331)
Q Consensus 33 ~~~~~t~~v~-Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~ 110 (331)
...|+...++ +++.+ ...++.. ..|.||||.|+..|+.+++++|++.|++ ++..+..|.||||+|+..|+.+++++
T Consensus 9 i~~gd~~~v~~ll~~~-~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~-~n~~~~~~~t~L~~A~~~~~~~iv~~ 86 (434)
T PHA02874 9 IYSGDIEAIEKIIKNK-GNCINISVDETTTPLIDAIRSGDAKIVELFIKHGAD-INHINTKIPHPLLTAIKIGAHDIIKL 86 (434)
T ss_pred HhcCCHHHHHHHHHcC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 4455666788 88876 4556667 8899999999999999999999999998 99999999999999999999999999
Q ss_pred HHhcCCCc--------------------cccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHh
Q 043901 111 LRSFNQAK--------------------DNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILA 170 (331)
Q Consensus 111 Ll~~g~~~--------------------~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~ 170 (331)
|++.|+++ .+++.++..|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+
T Consensus 87 Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad-~n~~d~~g~tpLh~A~ 165 (434)
T PHA02874 87 LIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGAD-VNIEDDNGCYPIHIAI 165 (434)
T ss_pred HHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHH
Confidence 99888653 13477889999999999999999999999999998 9999999999999999
Q ss_pred cCCCcccccccchhHHHHHhhhcccCc-CCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCC
Q 043901 171 SKPTAFKRGSRLGLFDRIIHYYKTKGE-ANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGL 249 (331)
Q Consensus 171 ~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~ 249 (331)
..++ .++++.|+..+.+... +..+.+|+|.
T Consensus 166 ~~~~-------~~iv~~Ll~~g~~~n~~~~~g~tpL~~------------------------------------------ 196 (434)
T PHA02874 166 KHNF-------FDIIKLLLEKGAYANVKDNNGESPLHN------------------------------------------ 196 (434)
T ss_pred HCCc-------HHHHHHHHHCCCCCCCCCCCCCCHHHH------------------------------------------
Confidence 9998 7999999998876643 4455555553
Q ss_pred ccchhhhhhhhchhhHHHHHhhh----hccCCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHHHcC-
Q 043901 250 KNFKISIIPYIKKVQGLKFMEKK----DQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENR- 324 (331)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~- 324 (331)
++..+..+.+++|.+. +.++..|.||||.|+..+. +.+++|+. +++++.+|..|+||||+|+..+
T Consensus 197 -------A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll~--~~~in~~d~~G~TpLh~A~~~~~ 266 (434)
T PHA02874 197 -------AAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLIN--NASINDQDIDGSTPLHHAINPPC 266 (434)
T ss_pred -------HHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh-HHHHHHHc--CCCCCCcCCCCCCHHHHHHhcCC
Confidence 2233444444544443 4567789999999999875 56777774 8899999999999999999876
Q ss_pred cccccc
Q 043901 325 QTSIYK 330 (331)
Q Consensus 325 ~~~iv~ 330 (331)
+.++++
T Consensus 267 ~~~iv~ 272 (434)
T PHA02874 267 DIDIID 272 (434)
T ss_pred cHHHHH
Confidence 666665
|
|
| >PHA02876 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=264.95 Aligned_cols=270 Identities=12% Similarity=0.071 Sum_probs=202.9
Q ss_pred chhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccH-----------HHH-HH-------------------------
Q 043901 2 EVNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQ-----------LYT-LQ------------------------- 44 (331)
Q Consensus 2 ~~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~-----------~v~-Ll------------------------- 44 (331)
+.++||.|+..|+.+.++.|++.+.+... ....+.++ +++ |+
T Consensus 178 G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~-~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~ 256 (682)
T PHA02876 178 CITPIHYAAERGNAKMVNLLLSYGADVNI-IALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETS 256 (682)
T ss_pred CCCHHHHHHHCCCHHHHHHHHHCCCCcCc-cCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHH
Confidence 34689999999999999999887654321 11122222 344 43
Q ss_pred ----hhhCCCcceec-cCCCchhhhhhccCCH-HHHHHHHhcCcccccccCCCCCcHHHHHHhcC-CHHHHHHHHhcCCC
Q 043901 45 ----QQLGKPILYIR-LGGNHGRKYIKPLGNE-AMCHCTASKDRELISVRNNDSETPLFLAALHG-NMDAFLCLRSFNQA 117 (331)
Q Consensus 45 ----~~~~~~~~~~~-~~g~t~Lh~A~~~g~~-~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~-~~~~~~~Ll~~g~~ 117 (331)
+.| .+ .+.. ..|.||||+|+..|+. +++++|++.|++ ++.+|..|.||||+|+..| ..+++++|+..|++
T Consensus 257 ~~Ll~~g-~~-vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gad-in~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gad 333 (682)
T PHA02876 257 LLLYDAG-FS-VNSIDDCKNTPLHHASQAPSLSRLVPKLLERGAD-VNAKNIKGETPLYLMAKNGYDTENIRTLIMLGAD 333 (682)
T ss_pred HHHHHCC-CC-CCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCC
Confidence 333 22 3344 6799999999999886 699999999988 9999999999999999999 58999999999999
Q ss_pred ccccccccCCCCcHHHHHHhc-CCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccC
Q 043901 118 KDNRQCRKNNGETILHSAISG-EYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKG 196 (331)
Q Consensus 118 ~~~~~~~~~~g~t~Lh~A~~~-~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~ 196 (331)
+ +.+|..|.||||+|+.. +..+++++|++.|++ ++.+|..|+||||+|+..++ .++++.|+..+.+..
T Consensus 334 i---n~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gad-in~~d~~G~TpLh~Aa~~~~-------~~iv~~Ll~~gad~~ 402 (682)
T PHA02876 334 V---NAADRLYITPLHQASTLDRNKDIVITLLELGAN-VNARDYCDKTPIHYAAVRNN-------VVIINTLLDYGADIE 402 (682)
T ss_pred C---CCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCC-CccCCCCCCCHHHHHHHcCC-------HHHHHHHHHCCCCcc
Confidence 8 99999999999999985 578999999999998 99999999999999999998 799999999888776
Q ss_pred c-CCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhh---ccCCccchhhhhhhhc-hhhHHHHHhh
Q 043901 197 E-ANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVL---GLGLKNFKISIIPYIK-KVQGLKFMEK 271 (331)
Q Consensus 197 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---g~~~~~~~~~~~~~~~-~~~~~~~l~~ 271 (331)
. ...+.+|+|. ++.. ......+.++++...... ..|.+ +++.++..+ ..+.+++|.+
T Consensus 403 ~~~~~g~T~Lh~---A~~~-------------~~~~~~vk~Ll~~gadin~~d~~G~T--pLh~Aa~~~~~~~iv~lLl~ 464 (682)
T PHA02876 403 ALSQKIGTALHF---ALCG-------------TNPYMSVKTLIDRGANVNSKNKDLST--PLHYACKKNCKLDVIEMLLD 464 (682)
T ss_pred ccCCCCCchHHH---HHHc-------------CCHHHHHHHHHhCCCCCCcCCCCCCh--HHHHHHHhCCcHHHHHHHHH
Confidence 4 3445566664 2111 111233445554333222 23333 455555544 5677888887
Q ss_pred h----hccCCCCchHHHHHHhcChHHHHHHHHhhCCcccc
Q 043901 272 K----DQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQ 307 (331)
Q Consensus 272 ~----~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~ 307 (331)
. +.+|..|.||||+|+.++ ++++.|+. .++++.
T Consensus 465 ~Gad~n~~d~~g~tpl~~a~~~~--~~v~~Ll~-~~a~~~ 501 (682)
T PHA02876 465 NGADVNAINIQNQYPLLIALEYH--GIVNILLH-YGAELR 501 (682)
T ss_pred CCCCCCCCCCCCCCHHHHHHHhC--CHHHHHHH-CCCCCC
Confidence 6 678899999999999876 57999998 687765
|
|
| >KOG0510 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=249.34 Aligned_cols=270 Identities=17% Similarity=0.130 Sum_probs=210.1
Q ss_pred hHHHHHHhcCCHHHHHHHHHcCCccccccc--c-------CC-ccHHHH-HHhhhCCCcceec-cCCCchhhhhhccCCH
Q 043901 4 NSLSKFAVRGQWDNIVQAYENNPMSREAKL--T-------NL-ETQLYT-LQQQLGKPILYIR-LGGNHGRKYIKPLGNE 71 (331)
Q Consensus 4 ~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~--~-------~~-~t~~v~-Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~ 71 (331)
.+||.|+....++.+..++..+........ . .+ ....++ |++.+ .+ ++.. .+|.||||.||..++.
T Consensus 90 ~~l~~a~~~~~~~~i~~Lls~gad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~-~d-vnl~de~~~TpLh~A~~~~~~ 167 (929)
T KOG0510|consen 90 TPLHAAVEYNQGDKIQVLLSYGADTPLRNLNKNAPLHLAADSGNYSCLKLLLDYG-AD-VNLEDENGFTPLHLAARKNKV 167 (929)
T ss_pred chhHHHhhcchHHHHHHHHhcCCCCChhhhhccCchhhccccchHHHHHHHHHhc-CC-ccccccCCCchhhHHHhcChH
Confidence 468999999999999999987655221110 0 01 112889 99998 44 6666 9999999999999999
Q ss_pred HHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHh-----cCCCccccccccCCCCcHHHHHHhcCCHHHHHH
Q 043901 72 AMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRS-----FNQAKDNRQCRKNNGETILHSAISGEYFSIAFQ 146 (331)
Q Consensus 72 ~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~-----~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~ 146 (331)
|..+.|++.|++ +-..|.+|++|+|.|+++|..++++..+. .+..+ +.-+..|.+|||.|+..|++++++.
T Consensus 168 E~~k~Li~~~a~-~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~i---n~~~n~~~~pLhlAve~g~~e~lk~ 243 (929)
T KOG0510|consen 168 EAKKELINKGAD-PCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHI---NFDNNEKATPLHLAVEGGDIEMLKM 243 (929)
T ss_pred HHHHHHHhcCCC-CCcccCcCCchHHHHHHhcchhhhhhhhccccchhhccc---ccccCCCCcchhhhhhcCCHHHHHH
Confidence 999999999998 99999999999999999999999999998 44555 8889999999999999999999999
Q ss_pred HHHhCCc--------------ccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCc-CCCCCCCccccccc
Q 043901 147 IMRAYPD--------------LVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGE-ANDEESPECNRSIS 211 (331)
Q Consensus 147 Ll~~~~~--------------~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~~~~~~~~~~~~ 211 (331)
.++.|.. .++..|.+|.||||+|++.|+ .+.++.|+..+.++.. ..++++|+|. |
T Consensus 244 ~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~-------~~svd~Ll~~Ga~I~~kn~d~~spLH~---A 313 (929)
T KOG0510|consen 244 CLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGG-------PESVDNLLGFGASINSKNKDEESPLHF---A 313 (929)
T ss_pred HHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCC-------hhHHHHHHHcCCcccccCCCCCCchHH---H
Confidence 9998764 234568899999999999999 7999999999999874 5677788886 3
Q ss_pred ccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcCh
Q 043901 212 FSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGV 291 (331)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~ 291 (331)
+..|.. ++|-.++. ..|. .++ +..|..|+||||+|+++|+
T Consensus 314 A~yg~~----------ntv~rLL~--------~~~~-------------------rll---ne~D~~g~tpLHlaa~~gH 353 (929)
T KOG0510|consen 314 AIYGRI----------NTVERLLQ--------ESDT-------------------RLL---NESDLHGMTPLHLAAKSGH 353 (929)
T ss_pred HHcccH----------HHHHHHHh--------CcCc-------------------ccc---ccccccCCCchhhhhhcCH
Confidence 322211 11111111 0000 011 4556678888888888888
Q ss_pred HHHHHHHHhhCCcccc---ccccCCCcHHHHHHHcCcccccc
Q 043901 292 AEMVKKILDTFPVAMQ---DMDSEKKNLVLLAVENRQTSIYK 330 (331)
Q Consensus 292 ~~~v~~Ll~~~~~~~~---~~d~~g~t~l~~A~~~~~~~iv~ 330 (331)
..+++.||+ .|++.. ..|++|.||||+|+.+|+..+|+
T Consensus 354 ~~v~qlLl~-~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~ 394 (929)
T KOG0510|consen 354 DRVVQLLLN-KGALFLNMSEADSDGNTALHLAAKYGNTSAVQ 394 (929)
T ss_pred HHHHHHHHh-cChhhhcccccccCCchhhhHHHHhccHHHHH
Confidence 888888888 577665 45888888888888888887775
|
|
| >PHA03100 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=254.33 Aligned_cols=228 Identities=18% Similarity=0.140 Sum_probs=195.4
Q ss_pred HHH-HHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHH-----HHhcCCHHHHHHHH
Q 043901 40 LYT-LQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFL-----AALHGNMDAFLCLR 112 (331)
Q Consensus 40 ~v~-Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~-----A~~~~~~~~~~~Ll 112 (331)
+++ +++.+ +..... ..+.||||+|+..|+.+++++|++.|++ ++..+..|.||||+ |+..++.+++++|+
T Consensus 17 ~~~~~~~~~--~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~-~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll 93 (480)
T PHA03100 17 NIKYIIMED--DLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGAD-INSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLL 93 (480)
T ss_pred HHHHHHhcC--ccchhhhcccchhhhhhhccCCHHHHHHHHHcCCC-CCCccccCcCHHHHHHHHHHHhhchHHHHHHHH
Confidence 455 66554 555566 8999999999999999999999999998 99999999999999 99999999999999
Q ss_pred hcCCCccccccccCCCCcHHHHHH--hcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCC--CcccccccchhHHHH
Q 043901 113 SFNQAKDNRQCRKNNGETILHSAI--SGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKP--TAFKRGSRLGLFDRI 188 (331)
Q Consensus 113 ~~g~~~~~~~~~~~~g~t~Lh~A~--~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~--~~~~~~~~~~~~~~l 188 (331)
+.|+++ +..+..|.||||+|+ ..|+.+++++|++.|++ ++..+..|.||||+|+..+ + .++++.|
T Consensus 94 ~~ga~i---~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~-------~~iv~~L 162 (480)
T PHA03100 94 EYGANV---NAPDNNGITPLLYAISKKSNSYSIVEYLLDNGAN-VNIKNSDGENLLHLYLESNKID-------LKILKLL 162 (480)
T ss_pred HCCCCC---CCCCCCCCchhhHHHhcccChHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHcCCCh-------HHHHHHH
Confidence 999998 999999999999999 99999999999999998 9999999999999999999 6 7999999
Q ss_pred HhhhcccCc-CCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHH
Q 043901 189 IHYYKTKGE-ANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLK 267 (331)
Q Consensus 189 i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 267 (331)
+..+.+... +..+.+|+|. | +..+..+.++
T Consensus 163 l~~g~din~~d~~g~tpL~~---A----------------------------------------------~~~~~~~iv~ 193 (480)
T PHA03100 163 IDKGVDINAKNRYGYTPLHI---A----------------------------------------------VEKGNIDVIK 193 (480)
T ss_pred HHCCCCcccccCCCCCHHHH---H----------------------------------------------HHhCCHHHHH
Confidence 999887753 3355566554 2 2233333344
Q ss_pred HHhhh----hccCCCC------chHHHHHHhcCh--HHHHHHHHhhCCccccccccCCCcHHHHHHHcCccccccC
Q 043901 268 FMEKK----DQQSGRN------ETAILIAAKMGV--AEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 268 ~l~~~----~~~~~~g------~tpLh~A~~~g~--~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
+|.+. +..+..| .||||.|+..|+ .+++++|++ .|++++.+|..|+||||+|+.+++.+++++
T Consensus 194 ~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~-~g~din~~d~~g~TpL~~A~~~~~~~iv~~ 268 (480)
T PHA03100 194 FLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLS-YGVPINIKDVYGFTPLHYAVYNNNPEFVKY 268 (480)
T ss_pred HHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 44332 3345566 999999999999 999999999 699999999999999999999999998863
|
|
| >PHA02875 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.2e-31 Score=240.45 Aligned_cols=202 Identities=17% Similarity=0.131 Sum_probs=180.2
Q ss_pred HHHH-HHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCC
Q 043901 39 QLYT-LQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQ 116 (331)
Q Consensus 39 ~~v~-Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~ 116 (331)
.+++ |++.| .+ .+.+ ..|.||||+|+..|+.+++++|++.|+. ++..+..+.||||+|+..|+.+++++|++.|+
T Consensus 16 ~iv~~Ll~~g-~~-~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~ 92 (413)
T PHA02875 16 DIARRLLDIG-IN-PNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAI-PDVKYPDIESELHDAVEEGDVKAVEELLDLGK 92 (413)
T ss_pred HHHHHHHHCC-CC-CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-ccccCCCcccHHHHHHHCCCHHHHHHHHHcCC
Confidence 0478 88888 44 4556 7899999999999999999999999997 88888899999999999999999999999998
Q ss_pred CccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccC
Q 043901 117 AKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKG 196 (331)
Q Consensus 117 ~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~ 196 (331)
.. .+..+..|.||||+|+..|+.+++++|++.|++ ++.++..|.||||+|+..++ .++++.|+..+.+.
T Consensus 93 ~~--~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad-~~~~~~~g~tpLh~A~~~~~-------~~~v~~Ll~~g~~~- 161 (413)
T PHA02875 93 FA--DDVFYKDGMTPLHLATILKKLDIMKLLIARGAD-PDIPNTDKFSPLHLAVMMGD-------IKGIELLIDHKACL- 161 (413)
T ss_pred cc--cccccCCCCCHHHHHHHhCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHcCC-------HHHHHHHHhcCCCC-
Confidence 65 234567899999999999999999999999998 99999999999999999998 79999999877543
Q ss_pred cCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccC
Q 043901 197 EANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQS 276 (331)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 276 (331)
+.+|
T Consensus 162 ----------------------------------------------------------------------------~~~d 165 (413)
T PHA02875 162 ----------------------------------------------------------------------------DIED 165 (413)
T ss_pred ----------------------------------------------------------------------------CCCC
Confidence 2346
Q ss_pred CCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCC-cHHHHHHHcCccccccC
Q 043901 277 GRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKK-NLVLLAVENRQTSIYKL 331 (331)
Q Consensus 277 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~-t~l~~A~~~~~~~iv~l 331 (331)
..|.||||+|+..|+.+++++|++ .|++++..+..|. ||+|+|+.+++.+++++
T Consensus 166 ~~g~TpL~~A~~~g~~eiv~~Ll~-~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~ 220 (413)
T PHA02875 166 CCGCTPLIIAMAKGDIAICKMLLD-SGANIDYFGKNGCVAALCYAIENNKIDIVRL 220 (413)
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCcCCCCCCchHHHHHHHcCCHHHHHH
Confidence 689999999999999999999999 7999999998875 89999999999998863
|
|
| >PHA02878 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.7e-31 Score=246.21 Aligned_cols=241 Identities=12% Similarity=0.069 Sum_probs=149.0
Q ss_pred hHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcCc
Q 043901 4 NSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKDR 82 (331)
Q Consensus 4 ~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~ 82 (331)
.+|+.++...+.+.+.+.++.-... ....... ..+.||||+|+..|+.++|++|++.|+
T Consensus 2 ~~~~~~~~~~~~~~i~~~i~~~~~~--------------------~~~~~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~ga 61 (477)
T PHA02878 2 DKLYKSMYTDNYETILKYIEYIDHT--------------------ENYSTSASLIPFIPLHQAVEARNLDVVKSLLTRGH 61 (477)
T ss_pred hhHHHHHHhccHHHHHHHHHHHhhh--------------------hhhcCcccccCcchHHHHHHcCCHHHHHHHHHCCC
Confidence 4688888888888787777651110 0001112 445677777777777777777777766
Q ss_pred ccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCH---------------------
Q 043901 83 ELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYF--------------------- 141 (331)
Q Consensus 83 ~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~--------------------- 141 (331)
+ +|.+|..|.||||+|+..|+.+++++|++.+.+. .. ..+.+|++.|+..++.
T Consensus 62 d-vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~---~~--~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~ 135 (477)
T PHA02878 62 N-VNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKC---SV--FYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVY 135 (477)
T ss_pred C-CCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcc---cc--ccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHH
Confidence 5 6777777777777777766666666666655433 11 3445555555544431
Q ss_pred ------------HHHHHHHHhCCcccccccCC-CccHhHHHhcCCCcccccccchhHHHHHhhhcccCc-CCCCCCCccc
Q 043901 142 ------------SIAFQIMRAYPDLVNSVNEN-GLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGE-ANDEESPECN 207 (331)
Q Consensus 142 ------------~~~~~Ll~~~~~~~~~~~~~-g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~~~~~~~~ 207 (331)
+++++|+++|++ ++.++.. |.||||+|+..++ .++++.|+..+.+... +..+.+|+|.
T Consensus 136 ~~~~~~~~~~~~~iv~~Ll~~gad-in~~~~~~g~tpLh~A~~~~~-------~~iv~~Ll~~gad~n~~d~~g~tpLh~ 207 (477)
T PHA02878 136 IDKKSKDDIIEAEITKLLLSYGAD-INMKDRHKGNTALHYATENKD-------QRLTELLLSYGANVNIPDKTNNSPLHH 207 (477)
T ss_pred HhhccchhhHHHHHHHHHHHcCCC-CCccCCCCCCCHHHHHHhCCC-------HHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence 255566666665 6666555 6666666666665 5666666665555432 2333444332
Q ss_pred ccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhh----hccCCCCchHH
Q 043901 208 RSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKK----DQQSGRNETAI 283 (331)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~g~tpL 283 (331)
| +..+..+.+++|.+. +.+|..|+|||
T Consensus 208 ---A----------------------------------------------~~~~~~~iv~~Ll~~ga~in~~d~~g~TpL 238 (477)
T PHA02878 208 ---A----------------------------------------------VKHYNKPIVHILLENGASTDARDKCGNTPL 238 (477)
T ss_pred ---H----------------------------------------------HHhCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence 1 111222222222221 45677899999
Q ss_pred HHHHhc-ChHHHHHHHHhhCCcccccccc-CCCcHHHHHHHcCcccccc
Q 043901 284 LIAAKM-GVAEMVKKILDTFPVAMQDMDS-EKKNLVLLAVENRQTSIYK 330 (331)
Q Consensus 284 h~A~~~-g~~~~v~~Ll~~~~~~~~~~d~-~g~t~l~~A~~~~~~~iv~ 330 (331)
|+|+.. ++.+++++|++ .|++++.++. .|+||||+| .++.++++
T Consensus 239 h~A~~~~~~~~iv~~Ll~-~gadvn~~~~~~g~TpLh~A--~~~~~~v~ 284 (477)
T PHA02878 239 HISVGYCKDYDILKLLLE-HGVDVNAKSYILGLTALHSS--IKSERKLK 284 (477)
T ss_pred HHHHHhcCCHHHHHHHHH-cCCCCCccCCCCCCCHHHHH--ccCHHHHH
Confidence 999976 79999999999 7999999886 799999999 45555554
|
|
| >PHA02917 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-30 Score=242.84 Aligned_cols=179 Identities=11% Similarity=-0.006 Sum_probs=140.8
Q ss_pred chhHHHHHHhc---CCHHHHHHHHHcCCccccccccCCccH---------------HHH-HHhhhCCCcceeccCCCchh
Q 043901 2 EVNSLSKFAVR---GQWDNIVQAYENNPMSREAKLTNLETQ---------------LYT-LQQQLGKPILYIRLGGNHGR 62 (331)
Q Consensus 2 ~~~~L~~a~~~---g~~~~~~~ll~~~~~~~~~~~~~~~t~---------------~v~-Ll~~~~~~~~~~~~~g~t~L 62 (331)
+.++||.|++. |+.+.++.|+..+.... .....+.|| +++ |++.++. .+. .+..+++
T Consensus 32 g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~-~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~--~n~-~~~~~~~ 107 (661)
T PHA02917 32 KNNALHAYLFNEHCNNVEVVKLLLDSGTNPL-HKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGY--SNI-NDFNIFS 107 (661)
T ss_pred CCcHHHHHHHhhhcCcHHHHHHHHHCCCCcc-ccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCC--CCC-CCcchHH
Confidence 35789997666 88999999998776653 445555777 345 5554311 122 2233677
Q ss_pred hhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHH--hcCCHHHHHHHHhcCCCccccccccC---CC---------
Q 043901 63 KYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAA--LHGNMDAFLCLRSFNQAKDNRQCRKN---NG--------- 128 (331)
Q Consensus 63 h~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~--~~~~~~~~~~Ll~~g~~~~~~~~~~~---~g--------- 128 (331)
|+|+..|+.|+|++|+++|++ +|.+|..|.||||.|+ ..|+.+++++|+++|+++ +.+|. .|
T Consensus 108 ~~a~~~~~~e~vk~Ll~~Gad-in~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~v---n~~d~~~~~g~~~~~~~~~ 183 (661)
T PHA02917 108 YMKSKNVDVDLIKVLVEHGFD-LSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSV---LYEDEDDEYGYAYDDYQPR 183 (661)
T ss_pred HHHhhcCCHHHHHHHHHcCCC-CCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCc---ccccccccccccccccccc
Confidence 889999999999999999998 9999999999999654 578999999999999998 65543 34
Q ss_pred --CcHHHHHHh-----------cCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhccc
Q 043901 129 --ETILHSAIS-----------GEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTK 195 (331)
Q Consensus 129 --~t~Lh~A~~-----------~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~ 195 (331)
.||||+|+. .++.+++++|++.|++ ++.+|.+|.||||+|+..++. ..++++.|++ +.+.
T Consensus 184 ~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gad-vn~~d~~G~TpLh~A~~~g~~-----~~eivk~Li~-g~d~ 256 (661)
T PHA02917 184 NCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIK-PSSIDKNYCTALQYYIKSSHI-----DIDIVKLLMK-GIDN 256 (661)
T ss_pred ccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCC-cccCCCCCCcHHHHHHHcCCC-----cHHHHHHHHh-CCcc
Confidence 599999986 4689999999999998 999999999999999999972 0268999875 5443
|
|
| >PHA02716 CPXV016; CPX019; EVM010; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-31 Score=247.29 Aligned_cols=264 Identities=10% Similarity=0.016 Sum_probs=164.7
Q ss_pred HHhcCCHHHHHHHHHcCC----cccccc----ccCC-ccHHHH-HHhhhCCCccee-ccCCCchhhhhhc--cCCHHHHH
Q 043901 9 FAVRGQWDNIVQAYENNP----MSREAK----LTNL-ETQLYT-LQQQLGKPILYI-RLGGNHGRKYIKP--LGNEAMCH 75 (331)
Q Consensus 9 a~~~g~~~~~~~ll~~~~----~~~~~~----~~~~-~t~~v~-Ll~~~~~~~~~~-~~~g~t~Lh~A~~--~g~~~~v~ 75 (331)
-++.|+.+..+.-+.... ...... ...+ +..+++ |++.|..++... ...|.||||+|+. .++.++++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~d~~~~~~y~~al~~~~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVk 196 (764)
T PHA02716 117 IIKDNKSKTANHVFDIPNNGDMDILYTYFNSPNTRGIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILE 196 (764)
T ss_pred HHHcCCchhhhhhhcCCCcccchHHHHHHhhhcccCCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHH
Confidence 356677777776665441 111111 1122 444999 999873343333 3789999999864 46889999
Q ss_pred HHHhcCcccccccCCCCCcHHHHHHhcCC--HHHHHHHHhcCCCccccccccCCCCcHHHHHH---hcCCHHHHHHHHHh
Q 043901 76 CTASKDRELISVRNNDSETPLFLAALHGN--MDAFLCLRSFNQAKDNRQCRKNNGETILHSAI---SGEYFSIAFQIMRA 150 (331)
Q Consensus 76 ~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~--~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~---~~~~~~~~~~Ll~~ 150 (331)
+|+++|++ +|.+|..|.||||+|+..|+ .+++++|+++|+++ +.++..|.||||+|+ ..++.++++.|++.
T Consensus 197 lLLe~GAD-VN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADV---N~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~ 272 (764)
T PHA02716 197 WLCNNGVN-VNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDM---DMKCVNGMSPIMTYIINIDNINPEITNIYIES 272 (764)
T ss_pred HHHHcCCC-CCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHhhhccCHHHHHHHHHh
Confidence 99999998 99999999999999999995 58999999999999 999999999999764 33444555555443
Q ss_pred CCcccccccCCCccHhH---HHhcCCCcccccccchhHHHHHhhhcccCc-CCCCCCCcccccccccCCCCccCCCCCcc
Q 043901 151 YPDLVNSVNENGLTRLH---ILASKPTAFKRGSRLGLFDRIIHYYKTKGE-ANDEESPECNRSISFSKNDDKCGQFFPPN 226 (331)
Q Consensus 151 ~~~~~~~~~~~g~t~l~---~A~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (331)
+.. .... ...++++ .|+..++ .++++.|+..+.++.. +..+.+|+|. ++.++.
T Consensus 273 ~d~-n~~~--~~~~~L~~~i~AA~~g~-------leiVklLLe~GAdIN~kD~~G~TPLH~---Aaa~~~---------- 329 (764)
T PHA02716 273 LDG-NKVK--NIPMILHSYITLARNID-------ISVVYSFLQPGVKLHYKDSAGRTCLHQ---YILRHN---------- 329 (764)
T ss_pred ccc-cccc--cchhhhHHHHHHHHcCC-------HHHHHHHHhCCCceeccCCCCCCHHHH---HHHHhC----------
Confidence 221 0000 0111122 1344444 4455555544444332 2233333332 000000
Q ss_pred hhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHh--------------cChH
Q 043901 227 YAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAK--------------MGVA 292 (331)
Q Consensus 227 ~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~--------------~g~~ 292 (331)
.....+.+|++ .|.. . +.+|..|+||||+|+. .++.
T Consensus 330 --~~~eIVklLLe-----~GAD-----------I------------N~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~ 379 (764)
T PHA02716 330 --ISTDIIKLLHE-----YGND-----------L------------NEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRL 379 (764)
T ss_pred --CCchHHHHHHH-----cCCC-----------C------------ccCCCCCCCHHHHHHHhhhhhccccccccccChH
Confidence 00011111111 0000 0 4567789999999875 3789
Q ss_pred HHHHHHHhhCCccccccccCCCcHHHH----HHHcCcccccc
Q 043901 293 EMVKKILDTFPVAMQDMDSEKKNLVLL----AVENRQTSIYK 330 (331)
Q Consensus 293 ~~v~~Ll~~~~~~~~~~d~~g~t~l~~----A~~~~~~~iv~ 330 (331)
+++++|++ .|++++.+|..|+||||. |..+++.++++
T Consensus 380 eVVklLL~-~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvk 420 (764)
T PHA02716 380 DVIQCLIS-LGADITAVNCLGYTPLTSYICTAQNYMYYDIID 420 (764)
T ss_pred HHHHHHHH-CCCCCCCcCCCCCChHHHHHHHHHhcChHHHHH
Confidence 99999999 799999999999999993 23345566654
|
|
| >PHA03095 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=242.39 Aligned_cols=240 Identities=13% Similarity=0.046 Sum_probs=192.6
Q ss_pred hhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcC---CHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcC
Q 043901 63 KYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHG---NMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGE 139 (331)
Q Consensus 63 h~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~---~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~ 139 (331)
..++..++.+++++|++.|++ ++..+..|.||||+|+..+ +.+++++|++.|+++ +.++..|.||||+|+..|
T Consensus 19 ~~~~~~~~~~~v~~Ll~~ga~-vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadi---n~~~~~g~TpLh~A~~~~ 94 (471)
T PHA03095 19 LLNASNVTVEEVRRLLAAGAD-VNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADV---NAPERCGFTPLHLYLYNA 94 (471)
T ss_pred HHcCCCCCHHHHHHHHHcCCC-cccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHcC
Confidence 567788999999999999998 9999999999999999998 999999999999999 999999999999999999
Q ss_pred -CHHHHHHHHHhCCcccccccCCCccHhHHHh--cCCCcccccccchhHHHHHhhhcccCc-CCCCCCCcccccccccCC
Q 043901 140 -YFSIAFQIMRAYPDLVNSVNENGLTRLHILA--SKPTAFKRGSRLGLFDRIIHYYKTKGE-ANDEESPECNRSISFSKN 215 (331)
Q Consensus 140 -~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~--~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~~~~~~~~~~~~~~~~ 215 (331)
..+++++|+++|++ ++.+|..|+||||+|+ ..++ .++++.|+..+.+... +..+.+|+|. ++..+
T Consensus 95 ~~~~iv~lLl~~ga~-in~~~~~g~tpLh~a~~~~~~~-------~~iv~~Ll~~gad~~~~d~~g~tpL~~---a~~~~ 163 (471)
T PHA03095 95 TTLDVIKLLIKAGAD-VNAKDKVGRTPLHVYLSGFNIN-------PKVIRLLLRKGADVNALDLYGMTPLAV---LLKSR 163 (471)
T ss_pred CcHHHHHHHHHcCCC-CCCCCCCCCCHHHHHhhCCcCC-------HHHHHHHHHcCCCCCccCCCCCCHHHH---HHHcC
Confidence 59999999999998 9999999999999999 3344 6899999999888764 5667788775 22111
Q ss_pred CCccCCCCCcchhhHHHHHHHHHHhchhh---hccCCccchhhhhhhhchhhHHHHHhhh----hccCCCCchHHHHHHh
Q 043901 216 DDKCGQFFPPNYAACFLFFWLLMKALPIV---LGLGLKNFKISIIPYIKKVQGLKFMEKK----DQQSGRNETAILIAAK 288 (331)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~g~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~g~tpLh~A~~ 288 (331)
......+.++++..... ...|.++++............++.|.+. +.+|..|+||||+|+.
T Consensus 164 ------------~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~ 231 (471)
T PHA03095 164 ------------NANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMAT 231 (471)
T ss_pred ------------CCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHh
Confidence 12345555665532222 1233343333222233444556666554 6788999999999999
Q ss_pred cChH--HHHHHHHhhCCccccccccCCCcHHHHHHHcCcccccc
Q 043901 289 MGVA--EMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYK 330 (331)
Q Consensus 289 ~g~~--~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~ 330 (331)
.|+. .+++.|++ .|++++.+|..|+||||+|+..|+.++++
T Consensus 232 ~~~~~~~~v~~ll~-~g~din~~d~~g~TpLh~A~~~~~~~~v~ 274 (471)
T PHA03095 232 GSSCKRSLVLPLLI-AGISINARNRYGQTPLHYAAVFNNPRACR 274 (471)
T ss_pred cCCchHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence 9865 67888898 69999999999999999999999998876
|
|
| >KOG0508 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-31 Score=225.38 Aligned_cols=198 Identities=15% Similarity=0.128 Sum_probs=136.9
Q ss_pred HHHHHhcCCHHHHHHHHHcCCc----cccccccCCccH-----------HHH-HHhhhCCC-----cceec---cCCCch
Q 043901 6 LSKFAVRGQWDNIVQAYENNPM----SREAKLTNLETQ-----------LYT-LQQQLGKP-----ILYIR---LGGNHG 61 (331)
Q Consensus 6 L~~a~~~g~~~~~~~ll~~~~~----~~~~~~~~~~t~-----------~v~-Ll~~~~~~-----~~~~~---~~g~t~ 61 (331)
.++|++.|+...+..++-.... .+......+.|| +|+ |+++...+ .+..+ ..|.+|
T Consensus 8 ~~naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~Iegapp 87 (615)
T KOG0508|consen 8 VINAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPP 87 (615)
T ss_pred HHHHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCch
Confidence 4466666776666666654332 111122233344 666 66633211 12222 457777
Q ss_pred hhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCH
Q 043901 62 RKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYF 141 (331)
Q Consensus 62 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~ 141 (331)
|-.|+..||+++|+.|+++|++ +|.....+.|||-.||..|+.++++||+++|+|+ +..|..|.|.||+|+..|+.
T Consensus 88 LWaAsaAGHl~vVk~L~~~ga~-VN~tT~TNStPLraACfDG~leivKyLvE~gad~---~IanrhGhTcLmIa~ykGh~ 163 (615)
T KOG0508|consen 88 LWAASAAGHLEVVKLLLRRGAS-VNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADP---EIANRHGHTCLMIACYKGHV 163 (615)
T ss_pred hhHHhccCcHHHHHHHHHhcCc-cccccccCCccHHHHHhcchhHHHHHHHHcCCCC---cccccCCCeeEEeeeccCch
Confidence 7777777888888888887766 7777777778888888888888888888888877 77778888888888888888
Q ss_pred HHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCc
Q 043901 142 SIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDK 218 (331)
Q Consensus 142 ~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (331)
+|+++|++.|++ ++.++..|+|+||.+++.|+ +++++.|++.+..+..+..+-+|+.. |..+|..+
T Consensus 164 ~I~qyLle~gAD-vn~ks~kGNTALH~caEsG~-------vdivq~Ll~~ga~i~~d~~GmtPL~~---Aa~tG~~~ 229 (615)
T KOG0508|consen 164 DIAQYLLEQGAD-VNAKSYKGNTALHDCAESGS-------VDIVQLLLKHGAKIDVDGHGMTPLLL---AAVTGHTD 229 (615)
T ss_pred HHHHHHHHhCCC-cchhcccCchHHHhhhhccc-------HHHHHHHHhCCceeeecCCCCchHHH---HhhhcchH
Confidence 888888888877 88888888888888888777 78888888887777777777777765 55555554
|
|
| >PHA02859 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-30 Score=212.56 Aligned_cols=176 Identities=12% Similarity=0.049 Sum_probs=153.7
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcC--CHHHHHHHHhcCCCcccccccc-CCCCcHH
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHG--NMDAFLCLRSFNQAKDNRQCRK-NNGETIL 132 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~--~~~~~~~Ll~~g~~~~~~~~~~-~~g~t~L 132 (331)
..+.||||+|+..|+.++|+.|++. ++..|..|.||||+|+..+ +.+++++|++.|+++ +.++ ..|.|||
T Consensus 19 ~~~~~pL~~A~~~~~~~~vk~Li~~----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadv---n~~~~~~g~TpL 91 (209)
T PHA02859 19 YRYCNPLFYYVEKDDIEGVKKWIKF----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADV---NFKTRDNNLSAL 91 (209)
T ss_pred hccCcHHHHHHHhCcHHHHHHHHHh----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCC---CccCCCCCCCHH
Confidence 5678999999999999999999974 5667889999999999865 899999999999999 8886 4899999
Q ss_pred HHHHhc---CCHHHHHHHHHhCCcccccccCCCccHhHHHhcC--CCcccccccchhHHHHHhhhcccCcCCCCCCCccc
Q 043901 133 HSAISG---EYFSIAFQIMRAYPDLVNSVNENGLTRLHILASK--PTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECN 207 (331)
Q Consensus 133 h~A~~~---~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~--~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~ 207 (331)
|+|+.. ++.+++++|+++|++ ++.+|..|.||||.|+.. ++ .++++.|+..+.++.
T Consensus 92 h~a~~~~~~~~~eiv~~Ll~~gad-in~~d~~G~TpLh~a~~~~~~~-------~~iv~~Li~~gadin----------- 152 (209)
T PHA02859 92 HHYLSFNKNVEPEILKILIDSGSS-ITEEDEDGKNLLHMYMCNFNVR-------INVIKLLIDSGVSFL----------- 152 (209)
T ss_pred HHHHHhCccccHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhccCC-------HHHHHHHHHcCCCcc-----------
Confidence 998754 479999999999998 999999999999998764 34 688888887775533
Q ss_pred ccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHH-H
Q 043901 208 RSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILI-A 286 (331)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~-A 286 (331)
.+|..|.||||. |
T Consensus 153 ------------------------------------------------------------------~~d~~g~t~Lh~~a 166 (209)
T PHA02859 153 ------------------------------------------------------------------NKDFDNNNILYSYI 166 (209)
T ss_pred ------------------------------------------------------------------cccCCCCcHHHHHH
Confidence 346689999996 5
Q ss_pred HhcChHHHHHHHHhhCCccccccccCCCcHHHHHHHcC
Q 043901 287 AKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENR 324 (331)
Q Consensus 287 ~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~ 324 (331)
+..++.+++++|++ .|++++.+|..|+||+++|..++
T Consensus 167 ~~~~~~~iv~~Ll~-~Gadi~~~d~~g~tpl~la~~~~ 203 (209)
T PHA02859 167 LFHSDKKIFDFLTS-LGIDINETNKSGYNCYDLIKFRN 203 (209)
T ss_pred HhcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHhhhh
Confidence 67889999999999 79999999999999999998775
|
|
| >KOG0510 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-30 Score=234.94 Aligned_cols=245 Identities=15% Similarity=0.081 Sum_probs=186.2
Q ss_pred HHH-HHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCC
Q 043901 40 LYT-LQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQA 117 (331)
Q Consensus 40 ~v~-Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~ 117 (331)
.++ |++.| ...... .++.+|+|+|+..|+.++++.|++.+.+ +|..|..|.||||+|+..++.|..+.|++.|++
T Consensus 103 ~i~~Lls~g--ad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~d-vnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~ 179 (929)
T KOG0510|consen 103 KIQVLLSYG--ADTPLRNLNKNAPLHLAADSGNYSCLKLLLDYGAD-VNLEDENGFTPLHLAARKNKVEAKKELINKGAD 179 (929)
T ss_pred HHHHHHhcC--CCCChhhhhccCchhhccccchHHHHHHHHHhcCC-ccccccCCCchhhHHHhcChHHHHHHHHhcCCC
Confidence 788 88888 334555 7888999999999999999999999876 999999999999999999999988888999998
Q ss_pred ccccccccCCCCcHHHHHHhcCCHHHHHHHHH-----hCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhh
Q 043901 118 KDNRQCRKNNGETILHSAISGEYFSIAFQIMR-----AYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYY 192 (331)
Q Consensus 118 ~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~-----~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~ 192 (331)
+ ...|.+|.+|+|.|+.+|..++.+.++. ++.. ++..+..|.||||.|+..|+ .+.++..+..+
T Consensus 180 ~---~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~-in~~~n~~~~pLhlAve~g~-------~e~lk~~L~n~ 248 (929)
T KOG0510|consen 180 P---CKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTH-INFDNNEKATPLHLAVEGGD-------IEMLKMCLQNG 248 (929)
T ss_pred C---CcccCcCCchHHHHHHhcchhhhhhhhccccchhhcc-cccccCCCCcchhhhhhcCC-------HHHHHHHHhCc
Confidence 8 7888899999999999999999998888 5555 88888899999999999988 78888877766
Q ss_pred cccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhh
Q 043901 193 KTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKK 272 (331)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 272 (331)
..... ....++-....+. ...+..|++ ++++++..+..+.++.|...
T Consensus 249 ~~~a~---------------------------~~~~~~~q~kelv--~~~d~dg~t----pLH~a~r~G~~~svd~Ll~~ 295 (929)
T KOG0510|consen 249 KKIAD---------------------------VQLDAMQQEKELV--NDEDNDGCT----PLHYAARQGGPESVDNLLGF 295 (929)
T ss_pred cccch---------------------------hhhHHHHHHHHHh--hcccccCCc----hHHHHHHcCChhHHHHHHHc
Confidence 44331 0000111111100 111222222 46677778888877777665
Q ss_pred ----hccCCCCchHHHHHHhcChHHHHHHHHh-hCCccccccccCCCcHHHHHHHcCccccccC
Q 043901 273 ----DQQSGRNETAILIAAKMGVAEMVKKILD-TFPVAMQDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 273 ----~~~~~~g~tpLh~A~~~g~~~~v~~Ll~-~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
+.++.++.||||.||.+|++..|+.||+ ..-..+|..|-.|.||+|+|+++||..++++
T Consensus 296 Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~ql 359 (929)
T KOG0510|consen 296 GASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQL 359 (929)
T ss_pred CCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHH
Confidence 6778888888888888888888888888 3345677788888888888888888888763
|
|
| >KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-30 Score=227.21 Aligned_cols=183 Identities=19% Similarity=0.175 Sum_probs=167.1
Q ss_pred CCchhhhhhccCCHHHHHHHHhc-CcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCcccccccc-CCCCcHHHHH
Q 043901 58 GNHGRKYIKPLGNEAMCHCTASK-DRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRK-NNGETILHSA 135 (331)
Q Consensus 58 g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~-~~g~t~Lh~A 135 (331)
-.+-++.|+..|..+.++.|++. +.+ ++..|.+|.|+||+|+.+++.+++++|+++|+++ |... .-+.||||+|
T Consensus 44 ~~~~~v~A~q~G~l~~v~~lve~~g~~-v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadv---n~~gG~l~stPLHWA 119 (600)
T KOG0509|consen 44 SLDDIVKATQYGELETVKELVESEGES-VNNPDREGVTLLHWAAINNRLDVARYLISHGADV---NAIGGVLGSTPLHWA 119 (600)
T ss_pred hhhhhhhHhhcchHHHHHHHHhhcCcC-CCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCc---cccCCCCCCCcchHH
Confidence 35678999999999999999998 665 9999999999999999999999999999999999 8887 6788999999
Q ss_pred HhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCC
Q 043901 136 ISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKN 215 (331)
Q Consensus 136 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (331)
+++|++.++++|+++|++ ++.+|.+|.||+|.|++.++ ..++-.++..+.+.
T Consensus 120 ar~G~~~vv~lLlqhGAd-pt~~D~~G~~~lHla~~~~~-------~~~vayll~~~~d~-------------------- 171 (600)
T KOG0509|consen 120 ARNGHISVVDLLLQHGAD-PTLKDKQGLTPLHLAAQFGH-------TALVAYLLSKGADI-------------------- 171 (600)
T ss_pred HHcCcHHHHHHHHHcCCC-CceecCCCCcHHHHHHHhCc-------hHHHHHHHHhcccC--------------------
Confidence 999999999999999999 99999999999999999999 67777777666332
Q ss_pred CCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHH
Q 043901 216 DDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMV 295 (331)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v 295 (331)
+.+|.+|+||||+|+..|....+
T Consensus 172 ---------------------------------------------------------d~~D~~grTpLmwAaykg~~~~v 194 (600)
T KOG0509|consen 172 ---------------------------------------------------------DLRDNNGRTPLMWAAYKGFALFV 194 (600)
T ss_pred ---------------------------------------------------------CCcCCCCCCHHHHHHHhcccHHH
Confidence 45688999999999999999989
Q ss_pred HHHHhhCCccccccc-cCCCcHHHHHHHcCcccccc
Q 043901 296 KKILDTFPVAMQDMD-SEKKNLVLLAVENRQTSIYK 330 (331)
Q Consensus 296 ~~Ll~~~~~~~~~~d-~~g~t~l~~A~~~~~~~iv~ 330 (331)
+.|++ .++++..+| .+|.||||+|+..|+..++.
T Consensus 195 ~~LL~-f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~ 229 (600)
T KOG0509|consen 195 RRLLK-FGASLLLTDDNHGNTPLHWAVVGGNLTAVK 229 (600)
T ss_pred HHHHH-hcccccccccccCCchHHHHHhcCCcceEe
Confidence 99999 899999988 89999999999999998875
|
|
| >PHA02989 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-29 Score=231.82 Aligned_cols=237 Identities=13% Similarity=0.094 Sum_probs=180.2
Q ss_pred ccHHHH-HHhhhCCCcceeccCCCchhhhhhcc--CCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcC------CHHH
Q 043901 37 ETQLYT-LQQQLGKPILYIRLGGNHGRKYIKPL--GNEAMCHCTASKDRELISVRNNDSETPLFLAALHG------NMDA 107 (331)
Q Consensus 37 ~t~~v~-Ll~~~~~~~~~~~~~g~t~Lh~A~~~--g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~------~~~~ 107 (331)
+..+++ |++.| .+ ++....|.||||.++.. ++.++|++|+++|++ +|.++ .+.||||.|+.++ ..++
T Consensus 15 ~~~~v~~LL~~G-ad-vN~~~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAd-vn~~~-~~~tpL~~a~~~~~~~~~~~~~i 90 (494)
T PHA02989 15 DKNALEFLLRTG-FD-VNEEYRGNSILLLYLKRKDVKIKIVKLLIDNGAD-VNYKG-YIETPLCAVLRNREITSNKIKKI 90 (494)
T ss_pred cHHHHHHHHHcC-CC-cccccCCCCHHHHHHhcCCCChHHHHHHHHcCCC-ccCCC-CCCCcHHHHHhccCcchhhHHHH
Confidence 444899 99998 44 44446688998765533 479999999999998 99886 5799999998764 4689
Q ss_pred HHHHHhcCCCccccccccCCCCcHHHHHHhc---CCHHHHHHHHHhCCccc-ccccCCCccHhHHHhcCC--Cccccccc
Q 043901 108 FLCLRSFNQAKDNRQCRKNNGETILHSAISG---EYFSIAFQIMRAYPDLV-NSVNENGLTRLHILASKP--TAFKRGSR 181 (331)
Q Consensus 108 ~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~---~~~~~~~~Ll~~~~~~~-~~~~~~g~t~l~~A~~~~--~~~~~~~~ 181 (331)
+++|+++|+++ +.++..|.||||.|+.. ++.+++++|+++|++ + +.+|..|+||||+|+..+ +
T Consensus 91 v~~Ll~~Gadi---n~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gad-in~~~d~~g~tpLh~a~~~~~~~------- 159 (494)
T PHA02989 91 VKLLLKFGADI---NLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGIN-VNDVKNSRGYNLLHMYLESFSVK------- 159 (494)
T ss_pred HHHHHHCCCCC---CCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCC-cccccCCCCCCHHHHHHHhccCC-------
Confidence 99999999999 99999999999988755 679999999999998 8 889999999999987653 4
Q ss_pred chhHHHHHhhhcccCc--CCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhh
Q 043901 182 LGLFDRIIHYYKTKGE--ANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPY 259 (331)
Q Consensus 182 ~~~~~~li~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~ 259 (331)
.++++.|+..+.+... ...+.+|++. ++..+.. ......+.+|++. |..
T Consensus 160 ~~iv~~Ll~~Gadi~~~~~~~g~tpL~~---a~~~~~~----------~~~~~iv~~Ll~~-----Ga~----------- 210 (494)
T PHA02989 160 KDVIKILLSFGVNLFEKTSLYGLTPMNI---YLRNDID----------VISIKVIKYLIKK-----GVN----------- 210 (494)
T ss_pred HHHHHHHHHcCCCccccccccCCChHHH---HHhcccc----------cccHHHHHHHHhC-----CCC-----------
Confidence 6899999999988764 3455566553 1100000 0012233333221 111
Q ss_pred hchhhHHHHHhhhhccCCCCchHHHHHHhc------ChHHHHHHHHhhCCccccccccCCCcHHHHHHHcCccccccC
Q 043901 260 IKKVQGLKFMEKKDQQSGRNETAILIAAKM------GVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 260 ~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~------g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
. +.++..|.||||.++.. +..+++++|+. +++++.+|..|+||||+|+..++.++|++
T Consensus 211 v------------n~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~--~advn~~d~~G~TpL~~Aa~~~~~~~v~~ 274 (494)
T PHA02989 211 I------------ETNNNGSESVLESFLDNNKILSKKEFKVLNFILK--YIKINKKDKKGFNPLLISAKVDNYEAFNY 274 (494)
T ss_pred c------------cccCCccccHHHHHHHhchhhcccchHHHHHHHh--CCCCCCCCCCCCCHHHHHHHhcCHHHHHH
Confidence 0 45566799999987764 45788887765 69999999999999999999999998863
|
|
| >KOG0508 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-29 Score=215.99 Aligned_cols=189 Identities=17% Similarity=0.155 Sum_probs=168.7
Q ss_pred ceeccCCCchhhhhhccCCHHHHHHHHhcCcccccc--------cCCCCCcHHHHHHhcCCHHHHHHHHhcCCCcccccc
Q 043901 52 LYIRLGGNHGRKYIKPLGNEAMCHCTASKDRELISV--------RNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQC 123 (331)
Q Consensus 52 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~--------~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~ 123 (331)
+....+|.|||-+||++||.++|++|+++....+.. ..-.|.+||..|+..||.++|+.|++.|+++ |.
T Consensus 36 ~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~V---N~ 112 (615)
T KOG0508|consen 36 IGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASV---ND 112 (615)
T ss_pred hccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCcc---cc
Confidence 444467889999999999999999999954332332 3446889999999999999999999999999 99
Q ss_pred ccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCC
Q 043901 124 RKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEES 203 (331)
Q Consensus 124 ~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~ 203 (331)
+.....|||-.||.-|+++++++|+++|++ ++..|+.|+|.|++||..|+ .++++.|++.+.++.
T Consensus 113 tT~TNStPLraACfDG~leivKyLvE~gad-~~IanrhGhTcLmIa~ykGh-------~~I~qyLle~gADvn------- 177 (615)
T KOG0508|consen 113 TTRTNSTPLRAACFDGHLEIVKYLVEHGAD-PEIANRHGHTCLMIACYKGH-------VDIAQYLLEQGADVN------- 177 (615)
T ss_pred ccccCCccHHHHHhcchhHHHHHHHHcCCC-CcccccCCCeeEEeeeccCc-------hHHHHHHHHhCCCcc-------
Confidence 999999999999999999999999999999 99999999999999999999 899999999987754
Q ss_pred CcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHH
Q 043901 204 PECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAI 283 (331)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpL 283 (331)
.++..|+|+|
T Consensus 178 ----------------------------------------------------------------------~ks~kGNTAL 187 (615)
T KOG0508|consen 178 ----------------------------------------------------------------------AKSYKGNTAL 187 (615)
T ss_pred ----------------------------------------------------------------------hhcccCchHH
Confidence 2345799999
Q ss_pred HHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHHHcCcccccc
Q 043901 284 LIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYK 330 (331)
Q Consensus 284 h~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~ 330 (331)
|.|++.|+.|+++.|++ +|+-+. +|..|.|||..|...|+.++|+
T Consensus 188 H~caEsG~vdivq~Ll~-~ga~i~-~d~~GmtPL~~Aa~tG~~~iVe 232 (615)
T KOG0508|consen 188 HDCAESGSVDIVQLLLK-HGAKID-VDGHGMTPLLLAAVTGHTDIVE 232 (615)
T ss_pred HhhhhcccHHHHHHHHh-CCceee-ecCCCCchHHHHhhhcchHHHH
Confidence 99999999999999999 788775 6778999999999999999986
|
|
| >PHA02730 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-28 Score=224.04 Aligned_cols=180 Identities=8% Similarity=-0.022 Sum_probs=136.3
Q ss_pred chhHHHHHHhcC---CHHHHHHHHHcCCccccccccCCccH-------------HHH-HHhhhCCCcceec-cCCCchhh
Q 043901 2 EVNSLSKFAVRG---QWDNIVQAYENNPMSREAKLTNLETQ-------------LYT-LQQQLGKPILYIR-LGGNHGRK 63 (331)
Q Consensus 2 ~~~~L~~a~~~g---~~~~~~~ll~~~~~~~~~~~~~~~t~-------------~v~-Ll~~~~~~~~~~~-~~g~t~Lh 63 (331)
+..+||.|+..| +.+.++.|++.+.+.. .+...|.|| +++ |++.|.....+.. .-+.+|||
T Consensus 41 G~TaLh~A~~~~~~~~~eivklLLs~GAdin-~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~l~ 119 (672)
T PHA02730 41 GNNALHCYVSNKCDTDIKIVRLLLSRGVERL-CRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFDLY 119 (672)
T ss_pred CCcHHHHHHHcCCcCcHHHHHHHHhCCCCCc-ccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCchHH
Confidence 357899999997 4888888888776644 555556666 788 9998722222323 56889999
Q ss_pred hhhc--cCCHHHHHHHHhcCcccccccCC-----CCCcHHHHHHhcCCHHHHHHHHhcCCCcccc----ccccCCCC-cH
Q 043901 64 YIKP--LGNEAMCHCTASKDRELISVRNN-----DSETPLFLAALHGNMDAFLCLRSFNQAKDNR----QCRKNNGE-TI 131 (331)
Q Consensus 64 ~A~~--~g~~~~v~~Ll~~~~~~~~~~d~-----~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~----~~~~~~g~-t~ 131 (331)
.++. .++.+++++|++.+..+++.... .|.+|++++...++.+++++|+++|+++-.. ...+..+. |.
T Consensus 120 ~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~ 199 (672)
T PHA02730 120 SYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNS 199 (672)
T ss_pred HHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccchh
Confidence 8887 89999999999755433665533 7899999999999999999999999988101 12344455 44
Q ss_pred HHHH------HhcCCHHHHHHHHHhCCcccccccCCCccHhHH--HhcCCCcccccccchhHHHHHh
Q 043901 132 LHSA------ISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHI--LASKPTAFKRGSRLGLFDRIIH 190 (331)
Q Consensus 132 Lh~A------~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~--A~~~~~~~~~~~~~~~~~~li~ 190 (331)
||++ ...++.|++++|+++|++ ++.+|..|.||||+ +...++ .++++.|++
T Consensus 200 l~~~il~~~~~~~n~~eiv~lLIs~Gad-IN~kd~~G~TpLh~~~~~~~~~-------~eiv~~Li~ 258 (672)
T PHA02730 200 LHYYILSHRESESLSKDVIKCLIDNNVS-IHGRDEGGSLPIQYYWSCSTID-------IEIVKLLIK 258 (672)
T ss_pred HHHHHHhhhhhhccCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCccc-------HHHHHHHHh
Confidence 5533 355789999999999998 99999999999995 555555 688888887
|
|
| >PHA02917 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-28 Score=231.79 Aligned_cols=211 Identities=12% Similarity=0.027 Sum_probs=156.0
Q ss_pred HHH-HHhhhCCCcceec-cCCCchhhhhhcc---CCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCH----HHHHH
Q 043901 40 LYT-LQQQLGKPILYIR-LGGNHGRKYIKPL---GNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNM----DAFLC 110 (331)
Q Consensus 40 ~v~-Ll~~~~~~~~~~~-~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~----~~~~~ 110 (331)
.|+ ++..+ .+++.. .+|+||||+|+.. |+.+++++|++.|++ ++.++..|.||||+|+..|+. ++++.
T Consensus 14 ~~~~l~~~~--~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~-v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~ 90 (661)
T PHA02917 14 ELKQMLRDR--DPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTN-PLHKNWRQLTPLEEYTNSRHVKVNKDIAMA 90 (661)
T ss_pred HHHHHHhcc--CcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCC-ccccCCCCCCHHHHHHHcCChhHHHHHHHH
Confidence 456 66554 445665 8999999997554 889999999999998 999999999999999999984 46688
Q ss_pred HHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHH--hcCCCcccccccchhHHHH
Q 043901 111 LRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHIL--ASKPTAFKRGSRLGLFDRI 188 (331)
Q Consensus 111 Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A--~~~~~~~~~~~~~~~~~~l 188 (331)
|++.+... +..+ ..+++|+|+..++.+++++|+++|++ ++.+|..|+||||.+ +..++ .++++.|
T Consensus 91 Ll~~~~~~---n~~~--~~~~~~~a~~~~~~e~vk~Ll~~Gad-in~~d~~g~T~L~~~~a~~~~~-------~eivklL 157 (661)
T PHA02917 91 LLEATGYS---NIND--FNIFSYMKSKNVDVDLIKVLVEHGFD-LSVKCENHRSVIENYVMTDDPV-------PEIIDLF 157 (661)
T ss_pred HHhccCCC---CCCC--cchHHHHHhhcCCHHHHHHHHHcCCC-CCccCCCCccHHHHHHHccCCC-------HHHHHHH
Confidence 88875533 3333 23778889999999999999999999 999999999999954 35667 7999999
Q ss_pred HhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHH
Q 043901 189 IHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKF 268 (331)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 268 (331)
+..+.++........ . |.. +.
T Consensus 158 i~~Ga~vn~~d~~~~--~---------------------------------------g~~----------~~-------- 178 (661)
T PHA02917 158 IENGCSVLYEDEDDE--Y---------------------------------------GYA----------YD-------- 178 (661)
T ss_pred HHcCCCccccccccc--c---------------------------------------ccc----------cc--------
Confidence 999987652110000 0 000 00
Q ss_pred HhhhhccCCCCchHHHHHHh-----------cChHHHHHHHHhhCCccccccccCCCcHHHHHHHcCcc--cccc
Q 043901 269 MEKKDQQSGRNETAILIAAK-----------MGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQT--SIYK 330 (331)
Q Consensus 269 l~~~~~~~~~g~tpLh~A~~-----------~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~--~iv~ 330 (331)
+.....+.||||+|+. +++.+++++|++ .|+|++.+|.+|+||||+|+.+|+. +||+
T Consensus 179 ----~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~-~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk 248 (661)
T PHA02917 179 ----DYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLIN-HGIKPSSIDKNYCTALQYYIKSSHIDIDIVK 248 (661)
T ss_pred ----cccccccccHHHHHHhhcccccccccccCcHHHHHHHHH-CCCCcccCCCCCCcHHHHHHHcCCCcHHHHH
Confidence 1112245677777765 456777777777 5777777777777777777777775 4554
|
|
| >PHA02730 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=221.16 Aligned_cols=306 Identities=10% Similarity=0.054 Sum_probs=212.4
Q ss_pred chhHHHHHHhcC--CHHHHHHHHHcCCccccc-cccCCccH-------------HHH-HHhhhCCCcce---ec--cCCC
Q 043901 2 EVNSLSKFAVRG--QWDNIVQAYENNPMSREA-KLTNLETQ-------------LYT-LQQQLGKPILY---IR--LGGN 59 (331)
Q Consensus 2 ~~~~L~~a~~~g--~~~~~~~ll~~~~~~~~~-~~~~~~t~-------------~v~-Ll~~~~~~~~~---~~--~~g~ 59 (331)
+..+||.|+..| +.+.++.|++........ ....++++ +|+ |++.+..++.. .. ..|.
T Consensus 77 G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~ 156 (672)
T PHA02730 77 GLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGL 156 (672)
T ss_pred CCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccch
Confidence 467999999977 688888888775432111 12112333 899 88644233221 12 3789
Q ss_pred chhhhhhccCCHHHHHHHHhcCccccc-------ccCCCCCcH-HHHHH------hcCCHHHHHHHHhcCCCcccccccc
Q 043901 60 HGRKYIKPLGNEAMCHCTASKDRELIS-------VRNNDSETP-LFLAA------LHGNMDAFLCLRSFNQAKDNRQCRK 125 (331)
Q Consensus 60 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~-------~~d~~g~tp-Lh~A~------~~~~~~~~~~Ll~~g~~~~~~~~~~ 125 (331)
+|+++|+..++.|+|++|+++|++ ++ ..+..+++| ||+++ .+++.+++++|+++|+++ +.+|
T Consensus 157 ~~~yl~~~~~~~eIvklLi~~g~~-v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadI---N~kd 232 (672)
T PHA02730 157 VDIYVTTPNPRPEVLLWLLKSECY-STGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSI---HGRD 232 (672)
T ss_pred hhhhHhcCCCchHHHHHHHHcCCc-ccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCC---CCCC
Confidence 999999999999999999999998 64 244555554 55343 456899999999999999 9999
Q ss_pred CCCCcHHHH--HHhcCCHHHHHHHHH--------------------------------hCCccccc--------------
Q 043901 126 NNGETILHS--AISGEYFSIAFQIMR--------------------------------AYPDLVNS-------------- 157 (331)
Q Consensus 126 ~~g~t~Lh~--A~~~~~~~~~~~Ll~--------------------------------~~~~~~~~-------------- 157 (331)
.+|.||||+ +...|+.|++++|++ +|.+ +..
T Consensus 233 ~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~i~~~~~~~~~~~~~~ 311 (672)
T PHA02730 233 EGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVD-MEIVNLLIEGRHTLIDV 311 (672)
T ss_pred CCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcc-hHHHHHHhhccCcchhh
Confidence 999999995 656678999999999 5555 433
Q ss_pred ------ccCCCcc---------------------HhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccc
Q 043901 158 ------VNENGLT---------------------RLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSI 210 (331)
Q Consensus 158 ------~~~~g~t---------------------~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~ 210 (331)
.+..|.+ .||.-...+. ....++++.|+..++++.....+.+|+|.
T Consensus 312 ~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~----~v~ieIvelLIs~GAdIN~k~~G~TpLH~--- 384 (672)
T PHA02730 312 MRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGD----MVSIPILRCMLDNGATMDKTTDNNYPLHD--- 384 (672)
T ss_pred hhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCC----cCcHHHHHHHHHCCCCCCcCCCCCcHHHH---
Confidence 4455544 4444444331 23479999999999999887778888885
Q ss_pred cccCCCCccCCCCCcchhhHHHHHHHHHHhch--hh---hccCCccchhh-hhhhh---------chhhHHHHHhhh---
Q 043901 211 SFSKNDDKCGQFFPPNYAACFLFFWLLMKALP--IV---LGLGLKNFKIS-IIPYI---------KKVQGLKFMEKK--- 272 (331)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l--~~---~g~~~~~~~~~-~~~~~---------~~~~~~~~l~~~--- 272 (331)
++...+ ...-...+.+|++... .. ...|.++++.. .+... ..++.+++|.+.
T Consensus 385 Aa~~nn----------n~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GAD 454 (672)
T PHA02730 385 YFVNNN----------NIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDD 454 (672)
T ss_pred HHHHcC----------CcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccc
Confidence 111110 0012566666665432 11 12344444311 11111 122446777665
Q ss_pred -hccCCCCchHHHHHHhcChHHHHHHHHhhCCcccccccc-CCCcHHHHHHHc--Ccccccc
Q 043901 273 -DQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDS-EKKNLVLLAVEN--RQTSIYK 330 (331)
Q Consensus 273 -~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~-~g~t~l~~A~~~--~~~~iv~ 330 (331)
+.+|..|.||||+|+..++.+++++|++ .|++++.+|. .|.||+|+|+.+ ++.++++
T Consensus 455 INakD~~G~TPLh~Aa~~~~~eive~LI~-~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~ 515 (672)
T PHA02730 455 IDMIDNENKTLLYYAVDVNNIQFARRLLE-YGASVNTTSRSIINTAIQKSSYRRENKTKLVD 515 (672)
T ss_pred hhccCCCCCCHHHHHHHhCCHHHHHHHHH-CCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHH
Confidence 7789999999999999999999999999 7999999997 599999999874 6777765
|
|
| >KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.6e-29 Score=237.22 Aligned_cols=296 Identities=17% Similarity=0.140 Sum_probs=208.7
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccH-----------HHHHHhhhCCCcceeccCCCchhhhhhccCCH
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQ-----------LYTLQQQLGKPILYIRLGGNHGRKYIKPLGNE 71 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~-----------~v~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~ 71 (331)
.++++.|...|..+.+..+++..+. +......+.++ +..++..+...-......|.||+|.|+.+|..
T Consensus 309 kt~l~~a~~~g~~~i~~~~l~~~~~-~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~ 387 (1143)
T KOG4177|consen 309 QTPLHIASRLGHEEIVHLLLQAGAT-PNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPLHLAVKSGRV 387 (1143)
T ss_pred cChhhhhcccchHHHHHHHhhccCC-ccccCcCCcccccHhhhhhhHHHHHHhhccccccCcccccCCcchhhhcccCch
Confidence 4567777777866666665554433 22333333444 22222222122222227788888888888888
Q ss_pred HHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcC-CHHHHHHHHHh
Q 043901 72 AMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGE-YFSIAFQIMRA 150 (331)
Q Consensus 72 ~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~-~~~~~~~Ll~~ 150 (331)
+++.+++..|.. ++.....|.||||.|+..++..+++.+++.|+++ +.++..|.||+|.|+..| +.+++..++..
T Consensus 388 ~~v~Lll~~ga~-~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~---~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~ 463 (1143)
T KOG4177|consen 388 SVVELLLEAGAD-PNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASP---NAKAKLGYTPLHVAAKKGRYLQIARLLLQY 463 (1143)
T ss_pred hHHHhhhhccCC-cccCCCCCcceeeehhhccCcceEEEEeccCCCh---hhHhhcCCChhhhhhhcccHhhhhhhHhhc
Confidence 888888888887 8888888888888888888888888888888888 888888888888888888 77888888888
Q ss_pred CCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCc-CCCCCCCcccccccccCCCCccCCCCCcchhh
Q 043901 151 YPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGE-ANDEESPECNRSISFSKNDDKCGQFFPPNYAA 229 (331)
Q Consensus 151 ~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (331)
+.+ ++...+.|.||||.|++.|+ .+++..++........ ....-++.|. +...+..
T Consensus 464 g~~-~n~~s~~G~T~Lhlaaq~Gh-------~~~~~llle~~~~~~~~~~~~l~~lhl---a~~~~~v------------ 520 (1143)
T KOG4177|consen 464 GAD-PNAVSKQGFTPLHLAAQEGH-------TEVVQLLLEGGANDNLDAKKGLTPLHL---AADEDTV------------ 520 (1143)
T ss_pred CCC-cchhccccCcchhhhhccCC-------chHHHHhhhcCCccCccchhccchhhh---hhhhhhH------------
Confidence 877 88888888888888888888 5777777766633322 2233344443 1111000
Q ss_pred HHHHHHHHHHhch---hhhccCCccchhhhhhhhchhhHHHHHhhh----hccCCCCchHHHHHHhcChHHHHHHHHhhC
Q 043901 230 CFLFFWLLMKALP---IVLGLGLKNFKISIIPYIKKVQGLKFMEKK----DQQSGRNETAILIAAKMGVAEMVKKILDTF 302 (331)
Q Consensus 230 ~~~~~~~l~~~~l---~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~ 302 (331)
.....++.... ...+.++. +++.++..++++.+++|.++ +.+++.|+||||.||..|+.+++++|++ +
T Consensus 521 --~~~~~l~~~ga~v~~~~~r~~T--pLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk-~ 595 (1143)
T KOG4177|consen 521 --KVAKILLEHGANVDLRTGRGYT--PLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLK-H 595 (1143)
T ss_pred --HHHHHHhhcCCceehhcccccc--hHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHH-c
Confidence 00011111000 01112212 46777788888889988887 6778899999999999999999999999 7
Q ss_pred CccccccccCCCcHHHHHHHcCccccccC
Q 043901 303 PVAMQDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 303 ~~~~~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
|+++|..|.+|.|||++|++.|+.+++++
T Consensus 596 GA~vna~d~~g~TpL~iA~~lg~~~~~k~ 624 (1143)
T KOG4177|consen 596 GASVNAADLDGFTPLHIAVRLGYLSVVKL 624 (1143)
T ss_pred CCCCCcccccCcchhHHHHHhcccchhhH
Confidence 99999999999999999999999998863
|
|
| >PHA02795 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.9e-28 Score=213.71 Aligned_cols=188 Identities=14% Similarity=0.070 Sum_probs=162.0
Q ss_pred HHH-HHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcCccccc------ccCCCCCcHHHHHHh--cCCHHHHH
Q 043901 40 LYT-LQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKDRELIS------VRNNDSETPLFLAAL--HGNMDAFL 109 (331)
Q Consensus 40 ~v~-Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~------~~d~~g~tpLh~A~~--~~~~~~~~ 109 (331)
+.+ ++++| .+ .+.. .+| +|+..+..|++.+|+++|++ ++ .++..++|+||.++. .|+.++++
T Consensus 64 ~~~~~~~~~-~~-i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~-~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~ 135 (437)
T PHA02795 64 LYDYFRIHR-DN-IDQYIVDR-----LFAYITYKDIISALVSKNYM-EDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVD 135 (437)
T ss_pred HHHHHHHcC-cc-hhhhhhhh-----HHhhcchHHHHHHHHhcccc-cchhhhhhhccccccHHHHHHHHhcCCCHHHHH
Confidence 667 77887 33 4444 555 99999999999999999998 77 788889999999999 89999999
Q ss_pred HHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccc-----cCCCccHhHHHhcCCCcccccccchh
Q 043901 110 CLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSV-----NENGLTRLHILASKPTAFKRGSRLGL 184 (331)
Q Consensus 110 ~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~-----~~~g~t~l~~A~~~~~~~~~~~~~~~ 184 (331)
+|+++||++ +.+ ++.||+|.|+..++.+++++|+++|+.+.+.. +..|.|++|.|+..++ .++
T Consensus 136 ~LI~~GADI---n~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~-------~eI 203 (437)
T PHA02795 136 FMVDHGAVI---YKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTV-------LEI 203 (437)
T ss_pred HHHHCCCCC---CCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCH-------HHH
Confidence 999999998 663 45899999999999999999999998533333 2457889999999887 799
Q ss_pred HHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhh
Q 043901 185 FDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQ 264 (331)
Q Consensus 185 ~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~ 264 (331)
++.|+..++++.
T Consensus 204 ve~LIs~GADIN-------------------------------------------------------------------- 215 (437)
T PHA02795 204 YKLCIPYIEDIN-------------------------------------------------------------------- 215 (437)
T ss_pred HHHHHhCcCCcC--------------------------------------------------------------------
Confidence 999988886643
Q ss_pred HHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHHHcCc
Q 043901 265 GLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQ 325 (331)
Q Consensus 265 ~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~ 325 (331)
.+|..|.||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+.+|+
T Consensus 216 ---------~kD~~G~TpLh~Aa~~g~~eiVelLL~-~GAdIN~~d~~G~TpLh~Aa~~g~ 266 (437)
T PHA02795 216 ---------QLDAGGRTLLYRAIYAGYIDLVSWLLE-NGANVNAVMSNGYTCLDVAVDRGS 266 (437)
T ss_pred ---------cCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCC
Confidence 456689999999999999999999999 799999999999999999999985
|
|
| >PHA02859 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-27 Score=193.43 Aligned_cols=152 Identities=7% Similarity=-0.012 Sum_probs=129.7
Q ss_pred hHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhcc--CCHHHHHHHHhc
Q 043901 4 NSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPL--GNEAMCHCTASK 80 (331)
Q Consensus 4 ~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~--g~~~~v~~Ll~~ 80 (331)
++|+.|+..|+.+.++.+++. .+.. ..|.||||+|+.. |+.+++++|++.
T Consensus 23 ~pL~~A~~~~~~~~vk~Li~~---------------------------~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~ 75 (209)
T PHA02859 23 NPLFYYVEKDDIEGVKKWIKF---------------------------VNDCNDLYETPIFSCLEKDKVNVEILKFLIEN 75 (209)
T ss_pred cHHHHHHHhCcHHHHHHHHHh---------------------------hhccCccCCCHHHHHHHcCCCCHHHHHHHHHC
Confidence 578888888888888888753 1223 6789999999975 489999999999
Q ss_pred CcccccccC-CCCCcHHHHHHhc---CCHHHHHHHHhcCCCccccccccCCCCcHHHHHHh--cCCHHHHHHHHHhCCcc
Q 043901 81 DRELISVRN-NDSETPLFLAALH---GNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAIS--GEYFSIAFQIMRAYPDL 154 (331)
Q Consensus 81 ~~~~~~~~d-~~g~tpLh~A~~~---~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~--~~~~~~~~~Ll~~~~~~ 154 (331)
|++ ++.++ ..|.||||+|+.. ++.+++++|+++|+++ +.+|..|.||||+|+. .++.+++++|++.|++
T Consensus 76 gad-vn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadi---n~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gad- 150 (209)
T PHA02859 76 GAD-VNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSI---TEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVS- 150 (209)
T ss_pred CCC-CCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCC---CCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC-
Confidence 998 99987 4899999998764 4799999999999999 9999999999999876 4689999999999998
Q ss_pred cccccCCCccHhHH-HhcCCCcccccccchhHHHHHhhhcc
Q 043901 155 VNSVNENGLTRLHI-LASKPTAFKRGSRLGLFDRIIHYYKT 194 (331)
Q Consensus 155 ~~~~~~~g~t~l~~-A~~~~~~~~~~~~~~~~~~li~~~~~ 194 (331)
++.+|..|.||||. |+..++ .++++.|+..+.+
T Consensus 151 in~~d~~g~t~Lh~~a~~~~~-------~~iv~~Ll~~Gad 184 (209)
T PHA02859 151 FLNKDFDNNNILYSYILFHSD-------KKIFDFLTSLGID 184 (209)
T ss_pred cccccCCCCcHHHHHHHhcCC-------HHHHHHHHHcCCC
Confidence 99999999999996 455555 6888888877754
|
|
| >PHA02798 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-27 Score=220.62 Aligned_cols=237 Identities=12% Similarity=0.107 Sum_probs=178.1
Q ss_pred HHH-HHhhhCCCcceeccCCCchhhhhh--ccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhc-----CCHHHHHHH
Q 043901 40 LYT-LQQQLGKPILYIRLGGNHGRKYIK--PLGNEAMCHCTASKDRELISVRNNDSETPLFLAALH-----GNMDAFLCL 111 (331)
Q Consensus 40 ~v~-Ll~~~~~~~~~~~~~g~t~Lh~A~--~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-----~~~~~~~~L 111 (331)
.|+ |++.+ ++... ..|.|+++.+. ..++.+++++|+++|++ +|.+|..|.||||.|+.+ +..+++++|
T Consensus 20 ~v~~ll~~~--~~~~~-~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gad-vn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~L 95 (489)
T PHA02798 20 TVKLLIKSC--NPNEI-VNEYSIFQKYLQRDSPSTDIVKLFINLGAN-VNGLDNEYSTPLCTILSNIKDYKHMLDIVKIL 95 (489)
T ss_pred HHHHHHhcC--Chhhh-cccchHHHHHHhCCCCCHHHHHHHHHCCCC-CCCCCCCCCChHHHHHHhHHhHHhHHHHHHHH
Confidence 788 88765 32222 44667776444 44689999999999998 999999999999999865 678999999
Q ss_pred HhcCCCccccccccCCCCcHHHHHHhcC---CHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHH
Q 043901 112 RSFNQAKDNRQCRKNNGETILHSAISGE---YFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRI 188 (331)
Q Consensus 112 l~~g~~~~~~~~~~~~g~t~Lh~A~~~~---~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~l 188 (331)
+++|+++ +.+|..|.||||+|+..+ +.+++++|+++|++ ++.+|..|.||||+|++.++. ...++++.|
T Consensus 96 l~~Gadi---N~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gad-vn~~d~~g~tpL~~a~~~~~~----~~~~vv~~L 167 (489)
T PHA02798 96 IENGADI---NKKNSDGETPLYCLLSNGYINNLEILLFMIENGAD-TTLLDKDGFTMLQVYLQSNHH----IDIEIIKLL 167 (489)
T ss_pred HHCCCCC---CCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCC-ccccCCCCCcHHHHHHHcCCc----chHHHHHHH
Confidence 9999999 999999999999999875 78999999999998 999999999999999998751 125899999
Q ss_pred HhhhcccCcC--CCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHH
Q 043901 189 IHYYKTKGEA--NDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGL 266 (331)
Q Consensus 189 i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 266 (331)
+..+.+.... ..+.+|+|. ++... ........+.++++. |.. .
T Consensus 168 l~~gadin~~~~~~~~t~Lh~---~~~~~----------~~~~~~~ivk~Li~~-----Ga~-----------i------ 212 (489)
T PHA02798 168 LEKGVDINTHNNKEKYDTLHC---YFKYN----------IDRIDADILKLFVDN-----GFI-----------I------ 212 (489)
T ss_pred HHhCCCcccccCcCCCcHHHH---HHHhc----------cccCCHHHHHHHHHC-----CCC-----------c------
Confidence 9998887642 234455543 00000 000012233333221 111 0
Q ss_pred HHHhhhhccCCCCchHHH-------HHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHHHcCccccccC
Q 043901 267 KFMEKKDQQSGRNETAIL-------IAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 267 ~~l~~~~~~~~~g~tpLh-------~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
+..+..|.|+++ .+...++.+++.+|+. ++|+|.+|..|+||||+|+.+++.+++++
T Consensus 213 ------~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~--~~dvN~~d~~G~TPL~~A~~~~~~~~v~~ 276 (489)
T PHA02798 213 ------NKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS--YIDINQVDELGFNPLYYSVSHNNRKIFEY 276 (489)
T ss_pred ------ccCCccccchHHHHHHHHHhhcccchHHHHHHHHh--cCCCCCcCcCCccHHHHHHHcCcHHHHHH
Confidence 344567788876 3456678899988776 59999999999999999999999998863
|
|
| >KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.2e-28 Score=231.70 Aligned_cols=309 Identities=19% Similarity=0.173 Sum_probs=194.1
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccH-----------HHH-HHhhhCCCcceec-cCCCchhhhhhccC
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQ-----------LYT-LQQQLGKPILYIR-LGGNHGRKYIKPLG 69 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~-----------~v~-Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g 69 (331)
+.+|+.|+..|+++.+..+++.+..... ..-.++|| +++ +++++ .+ .... ....||+|.|...|
T Consensus 243 l~~lh~a~~~g~~~i~~~l~~~ga~~~~-~~vr~~tplh~AA~~~~~e~~~~ll~~g-a~-~~~~~~~~kt~l~~a~~~g 319 (1143)
T KOG4177|consen 243 LTPLHVAAFMGHLDIVKLLLQHGASVNV-STVRGETPLHMAARAGQVEVCKLLLQNG-AD-VLAKARDDQTPLHIASRLG 319 (1143)
T ss_pred ccHHHHHHhccchhHHHHHHhcccccCc-ccccccCcchhhhccchhhhHhhhhccC-cc-cccccccccChhhhhcccc
Confidence 4678888888888888888877654321 11122333 666 77776 33 3344 66677777777777
Q ss_pred CHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHH
Q 043901 70 NEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMR 149 (331)
Q Consensus 70 ~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~ 149 (331)
+.++++++++.++. ++..+..|.||+|+++..++.++..+|...+... ...+..|.||+|.|+..|+.+++++++.
T Consensus 320 ~~~i~~~~l~~~~~-~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~---~~a~~k~~~pl~la~~~g~~~~v~Lll~ 395 (1143)
T KOG4177|consen 320 HEEIVHLLLQAGAT-PNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQR---RQAEEKGFTPLHLAVKSGRVSVVELLLE 395 (1143)
T ss_pred hHHHHHHHhhccCC-ccccCcCCcccccHhhhhhhHHHHHHhhcccccc---CcccccCCcchhhhcccCchhHHHhhhh
Confidence 77777777777766 7777777777777777777776666666666655 5566667777777777777777777777
Q ss_pred hCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCc-CCCCCCCcccccccccCC-CCc---------
Q 043901 150 AYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGE-ANDEESPECNRSISFSKN-DDK--------- 218 (331)
Q Consensus 150 ~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~--------- 218 (331)
.|.. ++.+.+.|.||+|.|+..++ ..+++.++..+.+... ...+.+|.|. +...+ -.+
T Consensus 396 ~ga~-~~~~gk~gvTplh~aa~~~~-------~~~v~l~l~~gA~~~~~~~lG~T~lhv---aa~~g~~~~~~~~l~~~g 464 (1143)
T KOG4177|consen 396 AGAD-PNSAGKNGVTPLHVAAHYGN-------PRVVKLLLKRGASPNAKAKLGYTPLHV---AAKKGRYLQIARLLLQYG 464 (1143)
T ss_pred ccCC-cccCCCCCcceeeehhhccC-------cceEEEEeccCCChhhHhhcCCChhhh---hhhcccHhhhhhhHhhcC
Confidence 7766 66677777777777776666 4555555554444432 3344555554 22221 000
Q ss_pred c-CCCCCcchhhH---------HHHHHHHHHhchhhhccCCc-cc-hhhhhhhhchhhHHHHHhhh----hccCCCCchH
Q 043901 219 C-GQFFPPNYAAC---------FLFFWLLMKALPIVLGLGLK-NF-KISIIPYIKKVQGLKFMEKK----DQQSGRNETA 282 (331)
Q Consensus 219 ~-~~~~~~~~~~~---------~~~~~~l~~~~l~~~g~~~~-~~-~~~~~~~~~~~~~~~~l~~~----~~~~~~g~tp 282 (331)
. .......+-+. .....++++... ....++. .+ .++.+...+.....+.+.++ +.++..|+||
T Consensus 465 ~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~-~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~Tp 543 (1143)
T KOG4177|consen 465 ADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGA-NDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTP 543 (1143)
T ss_pred CCcchhccccCcchhhhhccCCchHHHHhhhcCC-ccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccch
Confidence 0 00011111111 122223332110 0000000 01 24444455555555555543 5677889999
Q ss_pred HHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHHHcCccccccC
Q 043901 283 ILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 283 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
||+|+.+|+.++|++||+ +|+|++.+|+.|+||||.|+..|+.+|++|
T Consensus 544 Lh~A~~~g~v~~VkfLLe-~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~L 591 (1143)
T KOG4177|consen 544 LHVAVHYGNVDLVKFLLE-HGADVNAKDKLGYTPLHQAAQQGHNDIAEL 591 (1143)
T ss_pred HHHHHhcCCchHHHHhhh-CCccccccCCCCCChhhHHHHcChHHHHHH
Confidence 999999999999999999 799999999999999999999999999864
|
|
| >PHA02792 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=204.68 Aligned_cols=49 Identities=6% Similarity=0.064 Sum_probs=46.7
Q ss_pred hccCCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHHH
Q 043901 273 DQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVE 322 (331)
Q Consensus 273 ~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~ 322 (331)
+.+|..|.||||+|+..++.+++++|++ +|++++.+|..|+||+++|+.
T Consensus 404 N~kD~~G~TPLh~Aa~~~n~eivelLLs-~GADIN~kD~~G~TpL~~A~~ 452 (631)
T PHA02792 404 NKIDKHGRSILYYCIESHSVSLVEWLID-NGADINITTKYGSTCIGICVI 452 (631)
T ss_pred ccccccCcchHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHH
Confidence 6788899999999999999999999999 699999999999999999976
|
|
| >PHA02795 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=198.33 Aligned_cols=180 Identities=10% Similarity=-0.017 Sum_probs=153.9
Q ss_pred HHH-HHhhhCCCcc--e---ec-cCCCchhhhhhc--cCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHH
Q 043901 40 LYT-LQQQLGKPIL--Y---IR-LGGNHGRKYIKP--LGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLC 110 (331)
Q Consensus 40 ~v~-Ll~~~~~~~~--~---~~-~~g~t~Lh~A~~--~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~ 110 (331)
+++ |+++| ..+. . .+ ..++|+||+|+. .|+.+++++|+++|++ ++.+ ++.||+|.|+..++.+++++
T Consensus 92 ~~~~l~s~~-~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GAD-In~~--~~~t~lh~A~~~~~~eIVk~ 167 (437)
T PHA02795 92 IISALVSKN-YMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAV-IYKI--ECLNAYFRGICKKESSVVEF 167 (437)
T ss_pred HHHHHHhcc-cccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCC-CCCC--CCCCHHHHHHHcCcHHHHHH
Confidence 899 99988 3322 0 35 789999999998 8999999999999998 8874 45899999999999999999
Q ss_pred HHhcCCCccccccc-----cCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhH
Q 043901 111 LRSFNQAKDNRQCR-----KNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLF 185 (331)
Q Consensus 111 Ll~~g~~~~~~~~~-----~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~ 185 (331)
|+++|++. .+.. +..+.+++|.|...++.+++++|+++|++ ++.+|..|.||||+|+..++ .+++
T Consensus 168 Lls~Ga~~--~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GAD-IN~kD~~G~TpLh~Aa~~g~-------~eiV 237 (437)
T PHA02795 168 ILNCGIPD--ENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIED-INQLDAGGRTLLYRAIYAGY-------IDLV 237 (437)
T ss_pred HHhcCCcc--cccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCC-cCcCCCCCCCHHHHHHHcCC-------HHHH
Confidence 99999854 1222 23478999999999999999999999998 99999999999999999999 7999
Q ss_pred HHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhH
Q 043901 186 DRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQG 265 (331)
Q Consensus 186 ~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 265 (331)
+.|+..++++.
T Consensus 238 elLL~~GAdIN--------------------------------------------------------------------- 248 (437)
T PHA02795 238 SWLLENGANVN--------------------------------------------------------------------- 248 (437)
T ss_pred HHHHHCCCCCC---------------------------------------------------------------------
Confidence 99998886643
Q ss_pred HHHHhhhhccCCCCchHHHHHHhcC--------hHHHHHHHHhhCCcccccccc
Q 043901 266 LKFMEKKDQQSGRNETAILIAAKMG--------VAEMVKKILDTFPVAMQDMDS 311 (331)
Q Consensus 266 ~~~l~~~~~~~~~g~tpLh~A~~~g--------~~~~v~~Ll~~~~~~~~~~d~ 311 (331)
.++..|+||||+|+..| +.++++.|++ .|++++..+.
T Consensus 249 --------~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~-~gadI~~~~~ 293 (437)
T PHA02795 249 --------AVMSNGYTCLDVAVDRGSVIARRETHLKILEILLR-EPLSIDCIKL 293 (437)
T ss_pred --------CcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHh-CCCCCCchhH
Confidence 34668999999999998 4799999999 6998877554
|
|
| >PLN03192 Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-25 Score=218.05 Aligned_cols=177 Identities=18% Similarity=0.150 Sum_probs=159.5
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHH
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSA 135 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A 135 (331)
..+.++||.||..|+.++++.|++.|++ +|..|..|.||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|
T Consensus 523 ~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d-~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadi---n~~d~~G~TpL~~A 598 (823)
T PLN03192 523 PNMASNLLTVASTGNAALLEELLKAKLD-PDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV---HIRDANGNTALWNA 598 (823)
T ss_pred ccchhHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCC---CCcCCCCCCHHHHH
Confidence 4567999999999999999999999998 9999999999999999999999999999999998 99999999999999
Q ss_pred HhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCC
Q 043901 136 ISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKN 215 (331)
Q Consensus 136 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (331)
+..|+.+++++|++.+.. .+ ...|.++||.|+..|+ .++++.|+..+.++
T Consensus 599 ~~~g~~~iv~~L~~~~~~-~~--~~~~~~~L~~Aa~~g~-------~~~v~~Ll~~Gadi-------------------- 648 (823)
T PLN03192 599 ISAKHHKIFRILYHFASI-SD--PHAAGDLLCTAAKRND-------LTAMKELLKQGLNV-------------------- 648 (823)
T ss_pred HHhCCHHHHHHHHhcCcc-cC--cccCchHHHHHHHhCC-------HHHHHHHHHCCCCC--------------------
Confidence 999999999999987664 22 3457799999999999 79999998877653
Q ss_pred CCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHH
Q 043901 216 DDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMV 295 (331)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v 295 (331)
+.+|..|.||||+|+..|+.+++
T Consensus 649 ---------------------------------------------------------n~~d~~G~TpLh~A~~~g~~~iv 671 (823)
T PLN03192 649 ---------------------------------------------------------DSEDHQGATALQVAMAEDHVDMV 671 (823)
T ss_pred ---------------------------------------------------------CCCCCCCCCHHHHHHHCCcHHHH
Confidence 34567899999999999999999
Q ss_pred HHHHhhCCccccccccCC-CcHHHHHHHcC
Q 043901 296 KKILDTFPVAMQDMDSEK-KNLVLLAVENR 324 (331)
Q Consensus 296 ~~Ll~~~~~~~~~~d~~g-~t~l~~A~~~~ 324 (331)
++|++ .|++++..|..| .||.+++...+
T Consensus 672 ~~Ll~-~GAdv~~~~~~g~~t~~~l~~~~~ 700 (823)
T PLN03192 672 RLLIM-NGADVDKANTDDDFSPTELRELLQ 700 (823)
T ss_pred HHHHH-cCCCCCCCCCCCCCCHHHHHHHHH
Confidence 99999 799999999988 99999886543
|
|
| >KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-25 Score=201.71 Aligned_cols=250 Identities=15% Similarity=0.146 Sum_probs=189.7
Q ss_pred hHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcCc
Q 043901 4 NSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKDR 82 (331)
Q Consensus 4 ~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~ 82 (331)
+.+..|++.||++.+..+++...... ..--+.+ ..+..+.+ .+|-|+||.|+.+|+.+++++|++..+
T Consensus 5 qel~~a~ka~d~~tva~ll~~~~~r~--~~l~~~t---------rsds~n~qd~~gfTalhha~Lng~~~is~llle~ea 73 (854)
T KOG0507|consen 5 QELIDACKAGDYDTVALLLSSKKGRS--GLLFFTT---------RSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEA 73 (854)
T ss_pred hhHHHhhhcccHHHHHHhccCCCCCC--CCCCCCC---------CCccccccCccchhHHHHHHhcCchHHHHHHhcchh
Confidence 46889999999999999997543310 0000011 13446667 899999999999999999999999998
Q ss_pred ccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCC
Q 043901 83 ELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENG 162 (331)
Q Consensus 83 ~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g 162 (331)
. ++..|..|.+|||+|++.|+.++++.|+.++..+ |..+..|.||||.|++.|+.+++.+|+.++++ ...+|..+
T Consensus 74 ~-ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~---na~~~e~~tplhlaaqhgh~dvv~~Ll~~~ad-p~i~nns~ 148 (854)
T KOG0507|consen 74 L-LDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDIL---NAVNIENETPLHLAAQHGHLEVVFYLLKKNAD-PFIRNNSK 148 (854)
T ss_pred h-hhhhhccCcceEEehhhcCcchHHHHHHhcccCC---CcccccCcCccchhhhhcchHHHHHHHhcCCC-ccccCccc
Confidence 7 9999999999999999999999999999999877 99999999999999999999999999999999 99999999
Q ss_pred ccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhch
Q 043901 163 LTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALP 242 (331)
Q Consensus 163 ~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 242 (331)
.|++..|++.|. .++++.++........ ...
T Consensus 149 ~t~ldlA~qfgr-------~~Vvq~ll~~~~~~~~--~~~---------------------------------------- 179 (854)
T KOG0507|consen 149 ETVLDLASRFGR-------AEVVQMLLQKKFPVQS--SLR---------------------------------------- 179 (854)
T ss_pred ccHHHHHHHhhh-------hHHHHHHhhhccchhh--ccc----------------------------------------
Confidence 999999999999 7999999877332221 000
Q ss_pred hhhccCCccc----hhhhhhhhchhhHHHHHhhh----hccCCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCC
Q 043901 243 IVLGLGLKNF----KISIIPYIKKVQGLKFMEKK----DQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKK 314 (331)
Q Consensus 243 ~~~g~~~~~~----~~~~~~~~~~~~~~~~l~~~----~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~ 314 (331)
.|.-..+| .+|.+++.++++.++.|.+. |... .--|+||.|+.-|..++|.+|++ .|....++|..|+
T Consensus 180 --~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t-~~gtalheaalcgk~evvr~ll~-~gin~h~~n~~~q 255 (854)
T KOG0507|consen 180 --VGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTT-EDGTALHEAALCGKAEVVRFLLE-IGINTHIKNQHGQ 255 (854)
T ss_pred --CCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCccccc-ccchhhhhHhhcCcchhhhHHHh-hccccccccccch
Confidence 01000011 24555566666666666554 1111 23567777777777777777777 5777777777777
Q ss_pred cHHHHHHH
Q 043901 315 NLVLLAVE 322 (331)
Q Consensus 315 t~l~~A~~ 322 (331)
|+|++-..
T Consensus 256 taldil~d 263 (854)
T KOG0507|consen 256 TALDIIID 263 (854)
T ss_pred HHHHHHHh
Confidence 77776544
|
|
| >PHA02792 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.6e-25 Score=201.76 Aligned_cols=309 Identities=13% Similarity=0.047 Sum_probs=205.1
Q ss_pred hHHHHHHhcCCHHHH--HHHHHcCCccccccccCCccH------------HHH-HHhhhCCCcceec-cCCCchhhhhh-
Q 043901 4 NSLSKFAVRGQWDNI--VQAYENNPMSREAKLTNLETQ------------LYT-LQQQLGKPILYIR-LGGNHGRKYIK- 66 (331)
Q Consensus 4 ~~L~~a~~~g~~~~~--~~ll~~~~~~~~~~~~~~~t~------------~v~-Ll~~~~~~~~~~~-~~g~t~Lh~A~- 66 (331)
+-|+..++.=+.++. +.|++.+..... ..++.|| =++ ++..+ ...+.. .+|.+++|+-+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~--~~~~~~n~~~~~~~~~~~s 80 (631)
T PHA02792 5 KILYDSCKTFNIDACSAQSLIESGANPLY--EYDGETPLKAYVTKKNNNIKNDVVILLL--SSVDYKNINDFDIFEYLCS 80 (631)
T ss_pred hHHHhHhhccchhHHHHHHHHHcCCCccc--ccCCCccHHHHHhhhhhhHHHHHHHHHH--hCCCcCccCCccHHHHHHH
Confidence 346667777665544 444555554443 3444566 222 34444 223455 78888998765
Q ss_pred ccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHh-cCCHHHHHHHHhcCCCcc--------------------------
Q 043901 67 PLGNEAMCHCTASKDRELISVRNNDSETPLFLAAL-HGNMDAFLCLRSFNQAKD-------------------------- 119 (331)
Q Consensus 67 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~-~~~~~~~~~Ll~~g~~~~-------------------------- 119 (331)
..|+.|+|++|+++|++ +|.++..|.||+|+|+. .++.|++++|++.|++++
T Consensus 81 ~n~~lElvk~LI~~GAd-vN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 159 (631)
T PHA02792 81 DNIDIELLKLLISKGLE-INSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDEL 159 (631)
T ss_pred hcccHHHHHHHHHcCCC-cccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhc
Confidence 77999999999999998 99999999999999966 699999999999998741
Q ss_pred -------ccccccCCCCcHHHHHHhcC-------CHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhH
Q 043901 120 -------NRQCRKNNGETILHSAISGE-------YFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLF 185 (331)
Q Consensus 120 -------~~~~~~~~g~t~Lh~A~~~~-------~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~ 185 (331)
.++..+..|.||||+|+..+ +.|+++.|+++|++ ++.+|.+|.||||+|+.+.+- ..+++
T Consensus 160 ~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~-~~~~d~~g~t~l~~~~~~~~i-----~~ei~ 233 (631)
T PHA02792 160 DDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKE-MRYYTYREHTTLYYYVDKCDI-----KREIF 233 (631)
T ss_pred cccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCC-cCccCCCCChHHHHHHHcccc-----hHHHH
Confidence 23456778999999999999 89999999999999 999999999999999999821 15788
Q ss_pred HHHHhhhcccCcCCCCCCCcccccccccC------------------CCCccCC-------------CCCcchhhHHHHH
Q 043901 186 DRIIHYYKTKGEANDEESPECNRSISFSK------------------NDDKCGQ-------------FFPPNYAACFLFF 234 (331)
Q Consensus 186 ~~li~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~-------------~~~~~~~~~~~~~ 234 (331)
+.|+...-.-.. ......-++.... +...-.. .+..++. ..+
T Consensus 234 ~~L~~~~~~~~~----~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~ 306 (631)
T PHA02792 234 DALFDSNYSGNE----LMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYT---DSI 306 (631)
T ss_pred HHHHhccccccc----hHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHh---HHH
Confidence 887764321110 0000000111111 0000000 0000111 111
Q ss_pred HHHHH-------------hchhhhccCC---ccc-hhhhhhhhchhhHHHHHhhh----hccCCC--CchHHHHHHhcCh
Q 043901 235 WLLMK-------------ALPIVLGLGL---KNF-KISIIPYIKKVQGLKFMEKK----DQQSGR--NETAILIAAKMGV 291 (331)
Q Consensus 235 ~~l~~-------------~~l~~~g~~~---~~~-~~~~~~~~~~~~~~~~l~~~----~~~~~~--g~tpLh~A~~~g~ 291 (331)
+-++. .++...|... ... .+..++..+..+.+++|.+. +.+|.. |.||||.|+..+.
T Consensus 307 q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~ 386 (631)
T PHA02792 307 QDLLSEYVSYHTVYINVIKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHE 386 (631)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhcc
Confidence 11111 2222233321 112 13334556677778888776 445555 4799999887665
Q ss_pred H---HHHHHHHhhCCccccccccCCCcHHHHHHHcCccccccC
Q 043901 292 A---EMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 292 ~---~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
. +++++|++ +|+|+|.+|..|+||||+|+.+++.+++++
T Consensus 387 ~~v~~IlklLIs-~GADIN~kD~~G~TPLh~Aa~~~n~eivel 428 (631)
T PHA02792 387 SDVLSILKLCKP-YIDDINKIDKHGRSILYYCIESHSVSLVEW 428 (631)
T ss_pred HhHHHHHHHHHh-cCCccccccccCcchHHHHHHcCCHHHHHH
Confidence 4 45788888 799999999999999999999999988763
|
|
| >TIGR00870 trp transient-receptor-potential calcium channel protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-24 Score=211.60 Aligned_cols=157 Identities=15% Similarity=0.050 Sum_probs=121.2
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhh-hhhccCCHHHHHHHHhc
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRK-YIKPLGNEAMCHCTASK 80 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh-~A~~~g~~~~v~~Ll~~ 80 (331)
..+++.||.+|+.+.++.+++..+. .+ .+.. ..|+|||| .|+..++.+++++|++.
T Consensus 18 ~~~~l~A~~~g~~~~v~~lL~~~~~---------------------~~-in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~ 75 (743)
T TIGR00870 18 EKAFLPAAERGDLASVYRDLEEPKK---------------------LN-INCPDRLGRSALFVAAIENENLELTELLLNL 75 (743)
T ss_pred HHHHHHHHHcCCHHHHHHHhccccc---------------------cC-CCCcCccchhHHHHHHHhcChHHHHHHHHhC
Confidence 4678999999999999999987432 12 4445 78999999 88899999999999998
Q ss_pred CcccccccCCCCCcHHHHHHhcC---CHHHHHHHHhcCCCc-------cccccccCCCCcHHHHHHhcCCHHHHHHHHHh
Q 043901 81 DRELISVRNNDSETPLFLAALHG---NMDAFLCLRSFNQAK-------DNRQCRKNNGETILHSAISGEYFSIAFQIMRA 150 (331)
Q Consensus 81 ~~~~~~~~d~~g~tpLh~A~~~~---~~~~~~~Ll~~g~~~-------~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ 150 (331)
+. .+..|.||||.|+..+ ...++..+...+.+. ......+..|.||||+|+..|+.+++++|+++
T Consensus 76 g~-----~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~ 150 (743)
T TIGR00870 76 SC-----RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLER 150 (743)
T ss_pred CC-----CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhC
Confidence 86 5678999999999732 233455555544321 00112235799999999999999999999999
Q ss_pred CCccccccc--------------CCCccHhHHHhcCCCcccccccchhHHHHHhhhcc
Q 043901 151 YPDLVNSVN--------------ENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKT 194 (331)
Q Consensus 151 ~~~~~~~~~--------------~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~ 194 (331)
|++ ++.++ ..|.||||.|+..++ .++++.++..+.+
T Consensus 151 GAd-v~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~-------~~iv~lLl~~gad 200 (743)
T TIGR00870 151 GAS-VPARACGDFFVKSQGVDSFYHGESPLNAAACLGS-------PSIVALLSEDPAD 200 (743)
T ss_pred CCC-CCcCcCCchhhcCCCCCcccccccHHHHHHHhCC-------HHHHHHHhcCCcc
Confidence 998 76543 358999999999998 6888888777654
|
after chronic exposure to capsaicin. (McCleskey and Gold, 1999). |
| >KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-24 Score=166.74 Aligned_cols=123 Identities=16% Similarity=0.090 Sum_probs=58.3
Q ss_pred CCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHh
Q 043901 58 GNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAIS 137 (331)
Q Consensus 58 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~ 137 (331)
+.+|+.+++...+.+.+..+.++. +|..|+.|.|||.||+..|+.+++++|++.|+++ +...++..++|.+|++
T Consensus 129 p~s~~slsVhql~L~~~~~~~~n~---VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp---~~lgk~resALsLAt~ 202 (296)
T KOG0502|consen 129 PWSPLSLSVHQLHLDVVDLLVNNK---VNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADP---DALGKYRESALSLATR 202 (296)
T ss_pred cCChhhHHHHHHHHHHHHHHhhcc---ccCccccCchHhHHHHhcCchHHHHHHHHcCCCh---hhhhhhhhhhHhHHhc
Confidence 344444444444444433333321 4444445555555555555555555555555544 4444444455555555
Q ss_pred cCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcc
Q 043901 138 GEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKT 194 (331)
Q Consensus 138 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~ 194 (331)
.|..+++++|+.++.+ +|..|.+|-|||-+|++.++ .++++.|+..+++
T Consensus 203 ggytdiV~lLL~r~vd-VNvyDwNGgTpLlyAvrgnh-------vkcve~Ll~sGAd 251 (296)
T KOG0502|consen 203 GGYTDIVELLLTREVD-VNVYDWNGGTPLLYAVRGNH-------VKCVESLLNSGAD 251 (296)
T ss_pred CChHHHHHHHHhcCCC-cceeccCCCceeeeeecCCh-------HHHHHHHHhcCCC
Confidence 5555555555555444 55555555555555555444 4444444444433
|
|
| >PLN03192 Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.4e-23 Score=202.18 Aligned_cols=152 Identities=18% Similarity=0.206 Sum_probs=137.5
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHH
Q 043901 89 NNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHI 168 (331)
Q Consensus 89 d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~ 168 (331)
+..+.++||.|+..|+.++++.|++.|+++ +.+|..|.||||+|+..|+.+++++|+++|++ ++.+|.+|+||||.
T Consensus 522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~---n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad-in~~d~~G~TpL~~ 597 (823)
T PLN03192 522 DPNMASNLLTVASTGNAALLEELLKAKLDP---DIGDSKGRTPLHIAASKGYEDCVLVLLKHACN-VHIRDANGNTALWN 597 (823)
T ss_pred CccchhHHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHcChHHHHHHHHhcCCC-CCCcCCCCCCHHHH
Confidence 445679999999999999999999999999 99999999999999999999999999999998 99999999999999
Q ss_pred HhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccC
Q 043901 169 LASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLG 248 (331)
Q Consensus 169 A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~ 248 (331)
|+..++ .++++.|+..+....
T Consensus 598 A~~~g~-------~~iv~~L~~~~~~~~---------------------------------------------------- 618 (823)
T PLN03192 598 AISAKH-------HKIFRILYHFASISD---------------------------------------------------- 618 (823)
T ss_pred HHHhCC-------HHHHHHHHhcCcccC----------------------------------------------------
Confidence 999999 788888865432211
Q ss_pred CccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHHHcCcccc
Q 043901 249 LKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSI 328 (331)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~i 328 (331)
...|.+|||.|+..|+.++++.|++ .|+|++.+|.+|+||||+|+..|+.++
T Consensus 619 ---------------------------~~~~~~~L~~Aa~~g~~~~v~~Ll~-~Gadin~~d~~G~TpLh~A~~~g~~~i 670 (823)
T PLN03192 619 ---------------------------PHAAGDLLCTAAKRNDLTAMKELLK-QGLNVDSEDHQGATALQVAMAEDHVDM 670 (823)
T ss_pred ---------------------------cccCchHHHHHHHhCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHCCcHHH
Confidence 2247899999999999999999999 799999999999999999999999998
Q ss_pred ccC
Q 043901 329 YKL 331 (331)
Q Consensus 329 v~l 331 (331)
+++
T Consensus 671 v~~ 673 (823)
T PLN03192 671 VRL 673 (823)
T ss_pred HHH
Confidence 863
|
|
| >PHA02741 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4e-22 Score=158.86 Aligned_cols=132 Identities=11% Similarity=0.077 Sum_probs=117.2
Q ss_pred ceec-cCCCchhhhhhccCCHHHHHHHHhc------CcccccccCCCCCcHHHHHHhcCC----HHHHHHHHhcCCCccc
Q 043901 52 LYIR-LGGNHGRKYIKPLGNEAMCHCTASK------DRELISVRNNDSETPLFLAALHGN----MDAFLCLRSFNQAKDN 120 (331)
Q Consensus 52 ~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~------~~~~~~~~d~~g~tpLh~A~~~~~----~~~~~~Ll~~g~~~~~ 120 (331)
++.+ ..|.||||+|++.|+.++++.|+.. +++ ++.+|..|.||||+|+..|+ .+++++|++.|+++
T Consensus 14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~-in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadi-- 90 (169)
T PHA02741 14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAA-LNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADI-- 90 (169)
T ss_pred hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhh-hhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCC--
Confidence 3445 7899999999999999999998642 455 89999999999999999998 58999999999998
Q ss_pred cccccC-CCCcHHHHHHhcCCHHHHHHHHHh-CCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhccc
Q 043901 121 RQCRKN-NGETILHSAISGEYFSIAFQIMRA-YPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTK 195 (331)
Q Consensus 121 ~~~~~~-~g~t~Lh~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~ 195 (331)
+.++. .|.||||+|+..++.+++++|+.. +.+ ++.+|..|.||||+|+..++ .++++.|+......
T Consensus 91 -n~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~-~~~~n~~g~tpL~~A~~~~~-------~~iv~~L~~~~~~~ 158 (169)
T PHA02741 91 -NAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGID-LHFCNADNKSPFELAIDNED-------VAMMQILREIVATS 158 (169)
T ss_pred -CCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCCHHHHHHHCCC-------HHHHHHHHHHHHHh
Confidence 88885 899999999999999999999984 776 99999999999999999998 78999988876554
|
|
| >KOG0514 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-22 Score=168.31 Aligned_cols=127 Identities=19% Similarity=0.214 Sum_probs=103.0
Q ss_pred ceec-cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhc-----CCHHHHHHHHhcCCCccccccc-
Q 043901 52 LYIR-LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALH-----GNMDAFLCLRSFNQAKDNRQCR- 124 (331)
Q Consensus 52 ~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~-----~~~~~~~~Ll~~g~~~~~~~~~- 124 (331)
++.- .+|+|+||||+..+++++|+.||+.|..+++..|+-|+||+++|+.. .+.++|..|...|- + |++
T Consensus 261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgn-V---NaKA 336 (452)
T KOG0514|consen 261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGD-V---NAKA 336 (452)
T ss_pred hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccC-c---chhh
Confidence 4555 88999999999999999999999999988999999999999988764 34667777777643 3 554
Q ss_pred cCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHh
Q 043901 125 KNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIH 190 (331)
Q Consensus 125 ~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~ 190 (331)
...|.|+|++|+..|+.++++.|+..|++ +|.+|.+|.|+|+.|+.+|| .+++..|+.
T Consensus 337 sQ~gQTALMLAVSHGr~d~vk~LLacgAd-VNiQDdDGSTALMCA~EHGh-------kEivklLLA 394 (452)
T KOG0514|consen 337 SQHGQTALMLAVSHGRVDMVKALLACGAD-VNIQDDDGSTALMCAAEHGH-------KEIVKLLLA 394 (452)
T ss_pred hhhcchhhhhhhhcCcHHHHHHHHHccCC-CccccCCccHHHhhhhhhCh-------HHHHHHHhc
Confidence 45789999999999999999999999888 88888877777777777777 566666543
|
|
| >KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-22 Score=177.65 Aligned_cols=203 Identities=14% Similarity=0.122 Sum_probs=160.1
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcCcc
Q 043901 5 SLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKDRE 83 (331)
Q Consensus 5 ~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~ 83 (331)
.++.|+..|+++.+..+|.... .+ +.. .+|.|+||-+|.-.+.+||++|+++|++
T Consensus 43 ~~l~A~~~~d~~ev~~ll~~ga-----------------------~~-~~~n~DglTalhq~~id~~~e~v~~l~e~ga~ 98 (527)
T KOG0505|consen 43 VFLEACSRGDLEEVRKLLNRGA-----------------------SP-NLCNVDGLTALHQACIDDNLEMVKFLVENGAN 98 (527)
T ss_pred HHHhccccccHHHHHHHhccCC-----------------------Cc-cccCCccchhHHHHHhcccHHHHHHHHHhcCC
Confidence 3667788888888888887652 22 344 7889999999999999999999999998
Q ss_pred cccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCH----------------------
Q 043901 84 LISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYF---------------------- 141 (331)
Q Consensus 84 ~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~---------------------- 141 (331)
+|..|..|+||||.|+.-|+..++++|+++|+++ -..|.+|..|+..+...--.
T Consensus 99 -Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~---~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e 174 (527)
T KOG0505|consen 99 -VNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANL---LAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEE 174 (527)
T ss_pred -ccccccccCCcchhhcccccHHHHHHHHHhhhhh---hhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhH
Confidence 9999999999999999999999999999999988 55666666665444322111
Q ss_pred -----HHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCC
Q 043901 142 -----SIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKND 216 (331)
Q Consensus 142 -----~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (331)
++-.++. .|.. ....+..|-|.||.|+.+|. .++...|+..+.+.
T Consensus 175 ~~ml~D~~q~l~-~G~~-~d~~~~rG~T~lHvAaa~Gy-------~e~~~lLl~ag~~~--------------------- 224 (527)
T KOG0505|consen 175 QTMLDDARQWLN-AGAE-LDARHARGATALHVAAANGY-------TEVAALLLQAGYSV--------------------- 224 (527)
T ss_pred HHHHHHHHHHHh-cccc-ccccccccchHHHHHHhhhH-------HHHHHHHHHhccCc---------------------
Confidence 2333333 4554 66677779999999999988 67777776655432
Q ss_pred CccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHH
Q 043901 217 DKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVK 296 (331)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~ 296 (331)
+.+|.+|+||||.|+.+|..++++
T Consensus 225 --------------------------------------------------------~~~D~dgWtPlHAAA~Wg~~~~~e 248 (527)
T KOG0505|consen 225 --------------------------------------------------------NIKDYDGWTPLHAAAHWGQEDACE 248 (527)
T ss_pred --------------------------------------------------------ccccccCCCcccHHHHhhhHhHHH
Confidence 456779999999999999999999
Q ss_pred HHHhhCCccccccccCCCcHHHHHHH
Q 043901 297 KILDTFPVAMQDMDSEKKNLVLLAVE 322 (331)
Q Consensus 297 ~Ll~~~~~~~~~~d~~g~t~l~~A~~ 322 (331)
+|++ +|++.+.....|.||+++|..
T Consensus 249 lL~~-~ga~~d~~t~~g~~p~dv~de 273 (527)
T KOG0505|consen 249 LLVE-HGADMDAKTKMGETPLDVADE 273 (527)
T ss_pred HHHH-hhcccchhhhcCCCCccchhh
Confidence 9999 799999999999999998865
|
|
| >KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-22 Score=157.67 Aligned_cols=194 Identities=14% Similarity=0.032 Sum_probs=169.6
Q ss_pred HHhhhCCCcceeccCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccc
Q 043901 43 LQQQLGKPILYIRLGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQ 122 (331)
Q Consensus 43 Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~ 122 (331)
.+.-....+.+....|..+++.|+-+|+...+..++.++.. .|..+-.+.+|+.+++...+.+.+..+.+.. +|
T Consensus 81 s~~~~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~r-gnevs~~p~s~~slsVhql~L~~~~~~~~n~-----VN 154 (296)
T KOG0502|consen 81 SAQLDPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGAR-GNEVSLMPWSPLSLSVHQLHLDVVDLLVNNK-----VN 154 (296)
T ss_pred hhccCCCCCCCCCchhhhhhhhcCCCCCcceeeeeeccccc-CCccccccCChhhHHHHHHHHHHHHHHhhcc-----cc
Confidence 44333233344446799999999999999999999999998 9999999999999999999888877777643 38
Q ss_pred cccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCC
Q 043901 123 CRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEE 202 (331)
Q Consensus 123 ~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~ 202 (331)
..|+.|.|||.+|+..|++.++++|++.|++ +....+.-.|+|..|+..|. .++++.|+.+..++.
T Consensus 155 ~~De~GfTpLiWAaa~G~i~vV~fLL~~GAd-p~~lgk~resALsLAt~ggy-------tdiV~lLL~r~vdVN------ 220 (296)
T KOG0502|consen 155 ACDEFGFTPLIWAAAKGHIPVVQFLLNSGAD-PDALGKYRESALSLATRGGY-------TDIVELLLTREVDVN------ 220 (296)
T ss_pred CccccCchHhHHHHhcCchHHHHHHHHcCCC-hhhhhhhhhhhHhHHhcCCh-------HHHHHHHHhcCCCcc------
Confidence 8999999999999999999999999999999 99999999999999999998 799999988876644
Q ss_pred CCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchH
Q 043901 203 SPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETA 282 (331)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tp 282 (331)
.-|.+|-||
T Consensus 221 -----------------------------------------------------------------------vyDwNGgTp 229 (296)
T KOG0502|consen 221 -----------------------------------------------------------------------VYDWNGGTP 229 (296)
T ss_pred -----------------------------------------------------------------------eeccCCCce
Confidence 235579999
Q ss_pred HHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHHHcCccccc
Q 043901 283 ILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIY 329 (331)
Q Consensus 283 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv 329 (331)
|.+|++.|+.++|+-||+ .|+|++..|..|.++++.|+.-|+. +|
T Consensus 230 LlyAvrgnhvkcve~Ll~-sGAd~t~e~dsGy~~mdlAValGyr-~V 274 (296)
T KOG0502|consen 230 LLYAVRGNHVKCVESLLN-SGADVTQEDDSGYWIMDLAVALGYR-IV 274 (296)
T ss_pred eeeeecCChHHHHHHHHh-cCCCcccccccCCcHHHHHHHhhhH-HH
Confidence 999999999999999999 7999999999999999999999987 44
|
|
| >PHA02743 Viral ankyrin protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-21 Score=154.86 Aligned_cols=89 Identities=16% Similarity=0.146 Sum_probs=46.3
Q ss_pred cCCCchhhhhhccCCH----HHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHH---HHHHHhcCCCcccccccc-CC
Q 043901 56 LGGNHGRKYIKPLGNE----AMCHCTASKDRELISVRNNDSETPLFLAALHGNMDA---FLCLRSFNQAKDNRQCRK-NN 127 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~----~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~---~~~Ll~~g~~~~~~~~~~-~~ 127 (331)
..+.++||.|++.|+. +++++|++.++. ++.+|..|.||||+|+..|+.+. +++|++.|+++ +.++ ..
T Consensus 18 ~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~-~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi---n~~d~~~ 93 (166)
T PHA02743 18 EDEQNTFLRICRTGNIYELMEVAPFISGDGHL-LHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADI---NARELGT 93 (166)
T ss_pred cCCCcHHHHHHHcCCHHHHHHHHHHHhhcchh-hhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCC---CCCCCCC
Confidence 3444555555555554 344444444444 55555555555555555554332 45555555555 5554 34
Q ss_pred CCcHHHHHHhcCCHHHHHHHH
Q 043901 128 GETILHSAISGEYFSIAFQIM 148 (331)
Q Consensus 128 g~t~Lh~A~~~~~~~~~~~Ll 148 (331)
|.||||+|+..++.+++++|+
T Consensus 94 g~TpLh~A~~~g~~~iv~~Ll 114 (166)
T PHA02743 94 GNTLLHIAASTKNYELAEWLC 114 (166)
T ss_pred CCcHHHHHHHhCCHHHHHHHH
Confidence 555555555555555555555
|
|
| >KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-21 Score=176.15 Aligned_cols=170 Identities=16% Similarity=0.102 Sum_probs=143.0
Q ss_pred chhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhc
Q 043901 2 EVNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASK 80 (331)
Q Consensus 2 ~~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~ 80 (331)
+...||.|+.+|+...++-+++.. ..+... ..|.+|||+|++.|+.|+++.++..
T Consensus 49 gfTalhha~Lng~~~is~llle~e------------------------a~ldl~d~kg~~plhlaaw~g~~e~vkmll~q 104 (854)
T KOG0507|consen 49 GFTLLHHAVLNGQNQISKLLLDYE------------------------ALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQ 104 (854)
T ss_pred chhHHHHHHhcCchHHHHHHhcch------------------------hhhhhhhccCcceEEehhhcCcchHHHHHHhc
Confidence 467899999999988877777653 224444 7789999999999999999999999
Q ss_pred CcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCc-------
Q 043901 81 DRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPD------- 153 (331)
Q Consensus 81 ~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~------- 153 (331)
+.. +|..+..|.||||.|++.|+.+++.+|+++|++. ...|+.+.|+|..|++.|..++++.|++..-.
T Consensus 105 ~d~-~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp---~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~ 180 (854)
T KOG0507|consen 105 TDI-LNAVNIENETPLHLAAQHGHLEVVFYLLKKNADP---FIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRV 180 (854)
T ss_pred ccC-CCcccccCcCccchhhhhcchHHHHHHHhcCCCc---cccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccC
Confidence 855 9999999999999999999999999999999999 88999999999999999999999999987322
Q ss_pred ccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcc
Q 043901 154 LVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPEC 206 (331)
Q Consensus 154 ~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~ 206 (331)
....++..+.+|+|.|+.+|+ .++++.++..+.++...-..-+.+|
T Consensus 181 ~~~~~~~~~~~plHlaakngh-------~~~~~~ll~ag~din~~t~~gtalh 226 (854)
T KOG0507|consen 181 GDIKRPFPAIYPLHLAAKNGH-------VECMQALLEAGFDINYTTEDGTALH 226 (854)
T ss_pred CCCCCCCCCcCCcchhhhcch-------HHHHHHHHhcCCCcccccccchhhh
Confidence 012244568899999999999 7999999999988775444444333
|
|
| >PHA02884 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.1e-21 Score=163.42 Aligned_cols=114 Identities=11% Similarity=-0.035 Sum_probs=103.2
Q ss_pred cCCCc-hhhhhhccCCHHHHHHHHhcCccccccc----CCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccc-cCCCC
Q 043901 56 LGGNH-GRKYIKPLGNEAMCHCTASKDRELISVR----NNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCR-KNNGE 129 (331)
Q Consensus 56 ~~g~t-~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~----d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~-~~~g~ 129 (331)
..|.| +||.|+..|+.+++++|+++|++ +|.+ +..|.||||+|+..++.+++++|+++|+++ +.+ +..|.
T Consensus 30 ~~~~~~lL~~A~~~~~~eivk~LL~~GAd-iN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADV---N~~~~~~g~ 105 (300)
T PHA02884 30 KICIANILYSSIKFHYTDIIDAILKLGAD-PEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADV---NRYAEEAKI 105 (300)
T ss_pred cCCCCHHHHHHHHcCCHHHHHHHHHCCCC-ccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc---CcccCCCCC
Confidence 44555 56667788999999999999998 9987 458999999999999999999999999999 886 45799
Q ss_pred cHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCC
Q 043901 130 TILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPT 174 (331)
Q Consensus 130 t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~ 174 (331)
||||+|+..++.+++++|++.|++ ++.+|..|.||||+|+..++
T Consensus 106 TpLh~Aa~~~~~eivklLL~~GAd-in~kd~~G~TpL~~A~~~~~ 149 (300)
T PHA02884 106 TPLYISVLHGCLKCLEILLSYGAD-INIQTNDMVTPIELALMICN 149 (300)
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHhCC
Confidence 999999999999999999999998 99999999999999999776
|
|
| >PHA02743 Viral ankyrin protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.8e-21 Score=152.56 Aligned_cols=117 Identities=14% Similarity=0.027 Sum_probs=102.8
Q ss_pred HHH-HHhhhCCCcceec-cCCCchhhhhhccCCHHH---HHHHHhcCcccccccC-CCCCcHHHHHHhcCCHHHHHHHHh
Q 043901 40 LYT-LQQQLGKPILYIR-LGGNHGRKYIKPLGNEAM---CHCTASKDRELISVRN-NDSETPLFLAALHGNMDAFLCLRS 113 (331)
Q Consensus 40 ~v~-Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~---v~~Ll~~~~~~~~~~d-~~g~tpLh~A~~~~~~~~~~~Ll~ 113 (331)
+++ |++.+ ..++.. ..|+||||+|+..|+.++ +++|++.|++ +|.+| ..|.||||+|+..|+.+++++|++
T Consensus 39 ~~~~l~~~g--~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gad-in~~d~~~g~TpLh~A~~~g~~~iv~~Ll~ 115 (166)
T PHA02743 39 VAPFISGDG--HLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGAD-INARELGTGNTLLHIAASTKNYELAEWLCR 115 (166)
T ss_pred HHHHHhhcc--hhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCC-CCCCCCCCCCcHHHHHHHhCCHHHHHHHHh
Confidence 555 55665 445666 899999999999988654 8999999998 99998 589999999999999999999995
Q ss_pred -cCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCc
Q 043901 114 -FNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGL 163 (331)
Q Consensus 114 -~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~ 163 (331)
.|+++ +.++..|.||||+|+..++.+++++|+++|+. ++.++..|.
T Consensus 116 ~~gad~---~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~-~~~~~~~~~ 162 (166)
T PHA02743 116 QLGVNL---GAINYQHETAYHIAYKMRDRRMMEILRANGAV-CDDPLSIGL 162 (166)
T ss_pred ccCCCc---cCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcccCCc
Confidence 79988 99999999999999999999999999999998 888887764
|
|
| >KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.3e-21 Score=168.94 Aligned_cols=201 Identities=18% Similarity=0.169 Sum_probs=156.3
Q ss_pred hhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCH
Q 043901 62 RKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYF 141 (331)
Q Consensus 62 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~ 141 (331)
+.-|+..|..+=+..|+..|+. ++..+.+|.|+||-++...+.+||++|+++|++| +..|..|+||||.|+..|+.
T Consensus 44 ~l~A~~~~d~~ev~~ll~~ga~-~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~V---n~~d~e~wtPlhaaascg~~ 119 (527)
T KOG0505|consen 44 FLEACSRGDLEEVRKLLNRGAS-PNLCNVDGLTALHQACIDDNLEMVKFLVENGANV---NAQDNEGWTPLHAAASCGYL 119 (527)
T ss_pred HHhccccccHHHHHHHhccCCC-ccccCCccchhHHHHHhcccHHHHHHHHHhcCCc---cccccccCCcchhhcccccH
Confidence 3446688999999999999988 8999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHh-hhcccCcCCCCCCCcccccccccCCCCccC
Q 043901 142 SIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIH-YYKTKGEANDEESPECNRSISFSKNDDKCG 220 (331)
Q Consensus 142 ~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (331)
.++++|+..|++ +...+..|..|+..+..-.. ..++..-+. .+.++......+
T Consensus 120 ~i~~~li~~gA~-~~avNsdg~~P~dl~e~ea~-------~~~l~~~~~r~gi~iea~R~~~------------------ 173 (527)
T KOG0505|consen 120 NIVEYLIQHGAN-LLAVNSDGNMPYDLAEDEAT-------LDVLETEMARQGIDIEAARKAE------------------ 173 (527)
T ss_pred HHHHHHHHhhhh-hhhccCCCCCccccccCcch-------hHHHHHHHHHhcccHHHHhhhh------------------
Confidence 999999999999 88899999999998766543 233322211 111111000000
Q ss_pred CCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhh---hhccCCCCchHHHHHHhcChHHHHHH
Q 043901 221 QFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEK---KDQQSGRNETAILIAAKMGVAEMVKK 297 (331)
Q Consensus 221 ~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~g~tpLh~A~~~g~~~~v~~ 297 (331)
.. .+++.. .+++.. .+..+..|-|.||+|+.+|..++.++
T Consensus 174 ------e~-------~ml~D~------------------------~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~l 216 (527)
T KOG0505|consen 174 ------EQ-------TMLDDA------------------------RQWLNAGAELDARHARGATALHVAAANGYTEVAAL 216 (527)
T ss_pred ------HH-------HHHHHH------------------------HHHHhccccccccccccchHHHHHHhhhHHHHHHH
Confidence 00 000000 111110 03445569999999999999999999
Q ss_pred HHhhCCccccccccCCCcHHHHHHHcCcccccc
Q 043901 298 ILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYK 330 (331)
Q Consensus 298 Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~ 330 (331)
|++ .|.+++++|.+||||||.|+--|+.++.+
T Consensus 217 Ll~-ag~~~~~~D~dgWtPlHAAA~Wg~~~~~e 248 (527)
T KOG0505|consen 217 LLQ-AGYSVNIKDYDGWTPLHAAAHWGQEDACE 248 (527)
T ss_pred HHH-hccCcccccccCCCcccHHHHhhhHhHHH
Confidence 999 79999999999999999999888877654
|
|
| >TIGR00870 trp transient-receptor-potential calcium channel protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.3e-21 Score=186.45 Aligned_cols=190 Identities=17% Similarity=0.161 Sum_probs=147.7
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhc--CcccccccCCCCCcHHH-HHHhcCCHHHHHHHHhcCCCccccccccCCCCcHH
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASK--DRELISVRNNDSETPLF-LAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETIL 132 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~--~~~~~~~~d~~g~tpLh-~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~L 132 (331)
..+.++++.|++.|+.+.++.+++. +.+ +|..|..|.|||| .|+.+++.+++++|++.|+ .+..|.|||
T Consensus 15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~-in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-------~~~~G~T~L 86 (743)
T TIGR00870 15 SDEEKAFLPAAERGDLASVYRDLEEPKKLN-INCPDRLGRSALFVAAIENENLELTELLLNLSC-------RGAVGDTLL 86 (743)
T ss_pred CHHHHHHHHHHHcCCHHHHHHHhccccccC-CCCcCccchhHHHHHHHhcChHHHHHHHHhCCC-------CCCcChHHH
Confidence 5678899999999999999999998 666 8999999999999 8899999999999999876 455799999
Q ss_pred HHHHhcC---CHHHHHHHHHhCCcc-----c----ccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCC
Q 043901 133 HSAISGE---YFSIAFQIMRAYPDL-----V----NSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEAND 200 (331)
Q Consensus 133 h~A~~~~---~~~~~~~Ll~~~~~~-----~----~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 200 (331)
|.|+..+ ...++..+...+... + ...+..|.||||+|+..++ .++++.|+..+.++.....
T Consensus 87 h~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~-------~eiVklLL~~GAdv~~~~~ 159 (743)
T TIGR00870 87 HAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQN-------YEIVKLLLERGASVPARAC 159 (743)
T ss_pred HHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCC-------HHHHHHHHhCCCCCCcCcC
Confidence 9999732 223444444433210 1 1123569999999999999 8999999999887763211
Q ss_pred CCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCc
Q 043901 201 EESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNE 280 (331)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 280 (331)
... |.. +.. ......|.
T Consensus 160 ~~~--------------------------~~~-------------~~~------------------------~~~~~~g~ 176 (743)
T TIGR00870 160 GDF--------------------------FVK-------------SQG------------------------VDSFYHGE 176 (743)
T ss_pred Cch--------------------------hhc-------------CCC------------------------CCcccccc
Confidence 110 000 000 01123699
Q ss_pred hHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHHHcC
Q 043901 281 TAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENR 324 (331)
Q Consensus 281 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~ 324 (331)
||||.|+..|+.+++++|++ .|+|++.+|..|+||+|+|+..+
T Consensus 177 tpL~~Aa~~~~~~iv~lLl~-~gadin~~d~~g~T~Lh~A~~~~ 219 (743)
T TIGR00870 177 SPLNAAACLGSPSIVALLSE-DPADILTADSLGNTLLHLLVMEN 219 (743)
T ss_pred cHHHHHHHhCCHHHHHHHhc-CCcchhhHhhhhhHHHHHHHhhh
Confidence 99999999999999999999 79999999999999999999886
|
after chronic exposure to capsaicin. (McCleskey and Gold, 1999). |
| >PHA02741 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-20 Score=150.39 Aligned_cols=132 Identities=18% Similarity=0.192 Sum_probs=111.9
Q ss_pred ccccCCCCCcHHHHHHhcCCHHHHHHHHhc------CCCccccccccCCCCcHHHHHHhcCC----HHHHHHHHHhCCcc
Q 043901 85 ISVRNNDSETPLFLAALHGNMDAFLCLRSF------NQAKDNRQCRKNNGETILHSAISGEY----FSIAFQIMRAYPDL 154 (331)
Q Consensus 85 ~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~------g~~~~~~~~~~~~g~t~Lh~A~~~~~----~~~~~~Ll~~~~~~ 154 (331)
++.+|..|.||||+|+..|+.++++.|+.. |+++ +.+|..|.||||+|+..|+ .+++++|++.|++
T Consensus 14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~i---n~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad- 89 (169)
T PHA02741 14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAAL---NATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD- 89 (169)
T ss_pred hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhh---hccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC-
Confidence 556788999999999999999999998643 4666 8999999999999999998 5899999999998
Q ss_pred cccccC-CCccHhHHHhcCCCcccccccchhHHHHHhh-hcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHH
Q 043901 155 VNSVNE-NGLTRLHILASKPTAFKRGSRLGLFDRIIHY-YKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFL 232 (331)
Q Consensus 155 ~~~~~~-~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (331)
++.++. .|.||||+|+..++ .++++.|+.. +.+.
T Consensus 90 in~~~~~~g~TpLh~A~~~~~-------~~iv~~Ll~~~g~~~------------------------------------- 125 (169)
T PHA02741 90 INAQEMLEGDTALHLAAHRRD-------HDLAEWLCCQPGIDL------------------------------------- 125 (169)
T ss_pred CCCCCcCCCCCHHHHHHHcCC-------HHHHHHHHhCCCCCC-------------------------------------
Confidence 899885 89999999999998 7888888753 4322
Q ss_pred HHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHHhhCCcc
Q 043901 233 FFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDTFPVA 305 (331)
Q Consensus 233 ~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~ 305 (331)
+..|..|.||||+|+..|+.+++++|++. ++.
T Consensus 126 ----------------------------------------~~~n~~g~tpL~~A~~~~~~~iv~~L~~~-~~~ 157 (169)
T PHA02741 126 ----------------------------------------HFCNADNKSPFELAIDNEDVAMMQILREI-VAT 157 (169)
T ss_pred ----------------------------------------CcCCCCCCCHHHHHHHCCCHHHHHHHHHH-HHH
Confidence 23466899999999999999999999984 443
|
|
| >KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3e-20 Score=139.87 Aligned_cols=111 Identities=26% Similarity=0.276 Sum_probs=106.5
Q ss_pred chhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcC
Q 043901 60 HGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGE 139 (331)
Q Consensus 60 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~ 139 (331)
..+..|+..+...-|+.|++..++.+|.+|.+|.||||-|+.+|+.+|++.|+..|+++ +.+...|+||||.||+.+
T Consensus 65 rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~---~a~T~~GWTPLhSAckWn 141 (228)
T KOG0512|consen 65 RLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANK---EAKTNEGWTPLHSACKWN 141 (228)
T ss_pred HHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCc---ccccccCccchhhhhccc
Confidence 34678999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred CHHHHHHHHHhCCcccccccCCCccHhHHHhcCCC
Q 043901 140 YFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPT 174 (331)
Q Consensus 140 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~ 174 (331)
+.+++-+|+..|++ ++.......||||.|+...+
T Consensus 142 N~~va~~LLqhgaD-VnA~t~g~ltpLhlaa~~rn 175 (228)
T KOG0512|consen 142 NFEVAGRLLQHGAD-VNAQTKGLLTPLHLAAGNRN 175 (228)
T ss_pred chhHHHHHHhccCc-ccccccccchhhHHhhcccc
Confidence 99999999999999 99999999999999998876
|
|
| >KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.8e-21 Score=177.21 Aligned_cols=272 Identities=17% Similarity=0.139 Sum_probs=179.8
Q ss_pred hHHHHHHhcCCHHHHHHHHHcCCccccccccCCccH-----------HHH-HHhhhCCCcceeccCCCchhhhhhccCCH
Q 043901 4 NSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQ-----------LYT-LQQQLGKPILYIRLGGNHGRKYIKPLGNE 71 (331)
Q Consensus 4 ~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~-----------~v~-Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~ 71 (331)
.+|..|+-.|+...|..++..+..+.......++|+ +|+ ||..+ .......-...|||.+|...|.+
T Consensus 792 ~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~g-ankehrnvsDytPlsla~Sggy~ 870 (2131)
T KOG4369|consen 792 VPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAG-ANKEHRNVSDYTPLSLARSGGYT 870 (2131)
T ss_pred hhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHhh-ccccccchhhcCchhhhcCcchH
Confidence 345555555555555555554433222111111222 666 66666 22222223345777777777777
Q ss_pred HHHHHHHhcCccccccc--CCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccc-cCCCCcHHHHHHhcCCHHHHHHHH
Q 043901 72 AMCHCTASKDRELISVR--NNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCR-KNNGETILHSAISGEYFSIAFQIM 148 (331)
Q Consensus 72 ~~v~~Ll~~~~~~~~~~--d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~-~~~g~t~Lh~A~~~~~~~~~~~Ll 148 (331)
++|+.|+..|.+ +|.+ .+.|.+||.+|..+|+.+.++.|++.|.++ |.. ..+.+|+|-+|+..|+.+++.+|+
T Consensus 871 ~iI~~llS~Gse-InSrtgSklgisPLmlatmngh~~at~~ll~~gsdi---NaqIeTNrnTaltla~fqgr~evv~lLL 946 (2131)
T KOG4369|consen 871 KIIHALLSSGSE-INSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDI---NAQIETNRNTALTLALFQGRPEVVFLLL 946 (2131)
T ss_pred HHHHHHhhcccc-cccccccccCcchhhhhhhccccHHHHHHhcccchh---ccccccccccceeeccccCcchHHHHHH
Confidence 777777777766 5554 345777777777777777777777777776 552 334567777788888888888888
Q ss_pred HhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchh
Q 043901 149 RAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYA 228 (331)
Q Consensus 149 ~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (331)
.+.+. +..+-+.|.|||.-++..|. +++=..||..+.+....-..++...+-.+.+..|+.+
T Consensus 947 a~~an-vehRaktgltplme~AsgGy-------vdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~k---------- 1008 (2131)
T KOG4369|consen 947 AAQAN-VEHRAKTGLTPLMEMASGGY-------VDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTK---------- 1008 (2131)
T ss_pred HHhhh-hhhhcccCCcccchhhcCCc-------cccchhhhhcccccccCCCCCcCCccceeecCCCchh----------
Confidence 87777 77777788888888888777 6777777777777665333333333322223222221
Q ss_pred hHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHHhhCCccccc
Q 043901 229 ACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQD 308 (331)
Q Consensus 229 ~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~ 308 (331)
|+..++. |..+. +.+|++|+|+|.+|+..|++..+..|++ .++|++.
T Consensus 1009 ----fv~~lln------~~atv----------------------~v~NkkG~T~Lwla~~Gg~lss~~il~~-~~ad~d~ 1055 (2131)
T KOG4369|consen 1009 ----FVPKLLN------GDATV----------------------RVPNKKGCTVLWLASAGGALSSCPILVS-SVADADQ 1055 (2131)
T ss_pred ----hhHHhhC------Cccce----------------------ecccCCCCcccchhccCCccccchHHhh-cccChhh
Confidence 1111110 11111 6789999999999999999999999999 6999999
Q ss_pred cccCCCcHHHHHHHcCccccccC
Q 043901 309 MDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 309 ~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
.|....++++-|.+.||++||+.
T Consensus 1056 qdnr~~S~~maafRKgh~~iVk~ 1078 (2131)
T KOG4369|consen 1056 QDNRTNSRTMAAFRKGHFAIVKK 1078 (2131)
T ss_pred hhcccccccHHHHHhchhheecc
Confidence 99999999999999999999973
|
|
| >PHA02736 Viral ankyrin protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-20 Score=148.39 Aligned_cols=126 Identities=13% Similarity=0.118 Sum_probs=106.6
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcC------cccccccCCCCCcHHHHHHhcCCH---HHHHHHHhcCCCcccccccc-
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKD------RELISVRNNDSETPLFLAALHGNM---DAFLCLRSFNQAKDNRQCRK- 125 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~------~~~~~~~d~~g~tpLh~A~~~~~~---~~~~~Ll~~g~~~~~~~~~~- 125 (331)
..|.||||+|+..|+.+ .+++..+ +..++.+|..|.||||+|+..|+. +++++|++.|+++ +.++
T Consensus 15 ~~g~tpLh~A~~~g~~~--~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadi---n~~~~ 89 (154)
T PHA02736 15 IEGENILHYLCRNGGVT--DLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADI---NGKER 89 (154)
T ss_pred CCCCCHHHHHHHhCCHH--HHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCc---cccCC
Confidence 67999999999999843 3333221 112456789999999999999986 4689999999998 9888
Q ss_pred CCCCcHHHHHHhcCCHHHHHHHHHh-CCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcc
Q 043901 126 NNGETILHSAISGEYFSIAFQIMRA-YPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKT 194 (331)
Q Consensus 126 ~~g~t~Lh~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~ 194 (331)
..|.||||+|+..++.+++++|+.. +.+ ++.+|..|+||||+|+..++ .++++.|+..+.+
T Consensus 90 ~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d-~n~~~~~g~tpL~~A~~~~~-------~~i~~~Ll~~ga~ 151 (154)
T PHA02736 90 VFGNTPLHIAVYTQNYELATWLCNQPGVN-MEILNYAFKTPYYVACERHD-------AKMMNILRAKGAQ 151 (154)
T ss_pred CCCCcHHHHHHHhCCHHHHHHHHhCCCCC-CccccCCCCCHHHHHHHcCC-------HHHHHHHHHcCCC
Confidence 4899999999999999999999985 666 99999999999999999998 7999999887754
|
|
| >PHA02884 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.9e-20 Score=155.55 Aligned_cols=101 Identities=19% Similarity=0.142 Sum_probs=87.7
Q ss_pred ccccCCCCCc-HHHHHHhcCCHHHHHHHHhcCCCccccccc----cCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccc-
Q 043901 85 ISVRNNDSET-PLFLAALHGNMDAFLCLRSFNQAKDNRQCR----KNNGETILHSAISGEYFSIAFQIMRAYPDLVNSV- 158 (331)
Q Consensus 85 ~~~~d~~g~t-pLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~----~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~- 158 (331)
+-.+|..|.| |||.|+..|+.+++++|+++|+++ +.+ +..|.||||+|+..++.+++++|+++|++ ++.+
T Consensus 25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdi---N~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GAD-VN~~~ 100 (300)
T PHA02884 25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADP---EAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGAD-VNRYA 100 (300)
T ss_pred hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCc---cccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cCccc
Confidence 4456778887 567778889999999999999998 776 46899999999999999999999999998 9986
Q ss_pred cCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccC
Q 043901 159 NENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKG 196 (331)
Q Consensus 159 ~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~ 196 (331)
+..|.||||.|+..++ .++++.|+..+++..
T Consensus 101 ~~~g~TpLh~Aa~~~~-------~eivklLL~~GAdin 131 (300)
T PHA02884 101 EEAKITPLYISVLHGC-------LKCLEILLSYGADIN 131 (300)
T ss_pred CCCCCCHHHHHHHcCC-------HHHHHHHHHCCCCCC
Confidence 5689999999999998 799999988876543
|
|
| >KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-19 Score=137.02 Aligned_cols=121 Identities=14% Similarity=-0.006 Sum_probs=108.6
Q ss_pred CCcceec-cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCC
Q 043901 49 KPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNN 127 (331)
Q Consensus 49 ~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~ 127 (331)
.+.++.+ .+|.||||-|+.+|+.+||+.|+..|++ .+.+...|+||||.||.-.+++++-.|+++|+++ |+..+.
T Consensus 87 an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn-~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDV---nA~t~g 162 (228)
T KOG0512|consen 87 ANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGAN-KEAKTNEGWTPLHSACKWNNFEVAGRLLQHGADV---NAQTKG 162 (228)
T ss_pred cccccccccccccHHHHHHhcCchHHHHHHHHccCC-cccccccCccchhhhhcccchhHHHHHHhccCcc---cccccc
Confidence 4557778 9999999999999999999999999998 9999999999999999999999999999999999 999999
Q ss_pred CCcHHHHHHhcCCH-HHHHHHHHhCCcccccccCCCccHhHHHhcCC
Q 043901 128 GETILHSAISGEYF-SIAFQIMRAYPDLVNSVNENGLTRLHILASKP 173 (331)
Q Consensus 128 g~t~Lh~A~~~~~~-~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~ 173 (331)
..||||+|+...+. ..+.+|+.........++..+.||+.+|-+-+
T Consensus 163 ~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~ 209 (228)
T KOG0512|consen 163 LLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTS 209 (228)
T ss_pred cchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhh
Confidence 99999999987664 56677777665557778889999999998765
|
|
| >PHA02736 Viral ankyrin protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.6e-19 Score=140.64 Aligned_cols=129 Identities=10% Similarity=-0.015 Sum_probs=104.3
Q ss_pred chhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCH---HHHHHH
Q 043901 2 EVNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNE---AMCHCT 77 (331)
Q Consensus 2 ~~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~---~~v~~L 77 (331)
+..+||.|++.|++..+..+........ ...+... ..|.||||+|+..|+. +++++|
T Consensus 17 g~tpLh~A~~~g~~~~l~~~~~~~~~~~-------------------~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~L 77 (154)
T PHA02736 17 GENILHYLCRNGGVTDLLAFKNAISDEN-------------------RYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLL 77 (154)
T ss_pred CCCHHHHHHHhCCHHHHHHHHHHhcchh-------------------HHHHHHhcCCCCEEEEeecccCchhHHHHHHHH
Confidence 4578999999998543322221110000 1123334 7899999999999986 578999
Q ss_pred HhcCcccccccC-CCCCcHHHHHHhcCCHHHHHHHHhc-CCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCc
Q 043901 78 ASKDRELISVRN-NDSETPLFLAALHGNMDAFLCLRSF-NQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPD 153 (331)
Q Consensus 78 l~~~~~~~~~~d-~~g~tpLh~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~ 153 (331)
++.|++ ++.++ ..|.||||+|+..|+.+++++|++. |+++ +.++..|.||||+|+..|+.+++++|+..|+.
T Consensus 78 l~~gad-in~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~---n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~ 151 (154)
T PHA02736 78 MEWGAD-INGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNM---EILNYAFKTPYYVACERHDAKMMNILRAKGAQ 151 (154)
T ss_pred HHcCCC-ccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC---ccccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 999998 99998 4899999999999999999999985 8888 99999999999999999999999999999876
|
|
| >KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.1e-20 Score=148.81 Aligned_cols=116 Identities=27% Similarity=0.264 Sum_probs=110.0
Q ss_pred cceec-cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCC
Q 043901 51 ILYIR-LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGE 129 (331)
Q Consensus 51 ~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~ 129 (331)
.++.- ..|-+|||+||+.|+..++..|+++|+. +|..+....||||+|+.+|+.++++.|++..+|+ |+.+..|.
T Consensus 26 dln~gddhgfsplhwaakegh~aivemll~rgar-vn~tnmgddtplhlaaahghrdivqkll~~kadv---navnehgn 101 (448)
T KOG0195|consen 26 DLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGAR-VNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADV---NAVNEHGN 101 (448)
T ss_pred ccccccccCcchhhhhhhcccHHHHHHHHhcccc-cccccCCCCcchhhhhhcccHHHHHHHHHHhccc---chhhccCC
Confidence 35666 8899999999999999999999999998 9999999999999999999999999999999999 99999999
Q ss_pred cHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhc
Q 043901 130 TILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILAS 171 (331)
Q Consensus 130 t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~ 171 (331)
|||||||..|+-.+++-|+..|+. ++..++.|.||+..|--
T Consensus 102 tplhyacfwgydqiaedli~~ga~-v~icnk~g~tpldkakp 142 (448)
T KOG0195|consen 102 TPLHYACFWGYDQIAEDLISCGAA-VNICNKKGMTPLDKAKP 142 (448)
T ss_pred CchhhhhhhcHHHHHHHHHhccce-eeecccCCCCchhhhch
Confidence 999999999999999999999998 99999999999997743
|
|
| >PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.4e-19 Score=124.19 Aligned_cols=89 Identities=25% Similarity=0.266 Sum_probs=81.1
Q ss_pred hhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCH
Q 043901 62 RKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYF 141 (331)
Q Consensus 62 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~ 141 (331)
||+|++.|+.+++++|++.+.+ ++. |.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.
T Consensus 1 L~~A~~~~~~~~~~~ll~~~~~-~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~ 72 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLEKGAD-INL----GNTALHYAAENGNLEIVKLLLENGADI---NSQDKNGNTALHYAAENGNL 72 (89)
T ss_dssp HHHHHHTTTHHHHHHHHHTTST-TTS----SSBHHHHHHHTTTHHHHHHHHHTTTCT---T-BSTTSSBHHHHHHHTTHH
T ss_pred CHHHHHcCCHHHHHHHHHCcCC-CCC----CCCHHHHHHHcCCHHHHHHHHHhcccc---cccCCCCCCHHHHHHHcCCH
Confidence 7999999999999999998876 665 899999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHhCCccccccc
Q 043901 142 SIAFQIMRAYPDLVNSVN 159 (331)
Q Consensus 142 ~~~~~Ll~~~~~~~~~~~ 159 (331)
+++++|+++|++ ++.+|
T Consensus 73 ~~~~~Ll~~g~~-~~~~n 89 (89)
T PF12796_consen 73 EIVKLLLEHGAD-VNIRN 89 (89)
T ss_dssp HHHHHHHHTTT--TTSS-
T ss_pred HHHHHHHHcCCC-CCCcC
Confidence 999999999887 77654
|
These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B .... |
| >cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-17 Score=125.86 Aligned_cols=121 Identities=22% Similarity=0.332 Sum_probs=112.1
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHH
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSA 135 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A 135 (331)
..|.||||+|+..|+.+++++|++.+.. .+..+..|.||+|+|+..+..+++++|++.|+++ +..+..|.||+|+|
T Consensus 5 ~~g~t~l~~a~~~~~~~~i~~li~~~~~-~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~---~~~~~~~~~~l~~a 80 (126)
T cd00204 5 EDGRTPLHLAASNGHLEVVKLLLENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV---NARDKDGNTPLHLA 80 (126)
T ss_pred cCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc---cccCCCCCCHHHHH
Confidence 5789999999999999999999999987 7889999999999999999999999999999877 88889999999999
Q ss_pred HhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHH
Q 043901 136 ISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRI 188 (331)
Q Consensus 136 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~l 188 (331)
+..++.+++++|++++.. .+..+..|.||++.|...++ .++++.|
T Consensus 81 ~~~~~~~~~~~L~~~~~~-~~~~~~~~~~~l~~~~~~~~-------~~~~~~L 125 (126)
T cd00204 81 ARNGNLDVVKLLLKHGAD-VNARDKDGRTPLHLAAKNGH-------LEVVKLL 125 (126)
T ss_pred HHcCcHHHHHHHHHcCCC-CcccCCCCCCHHHHHHhcCC-------HHHHHHh
Confidence 999999999999999877 88889999999999999977 5666655
|
The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. |
| >KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.5e-18 Score=154.88 Aligned_cols=167 Identities=20% Similarity=0.169 Sum_probs=138.1
Q ss_pred ceec-cCCCchhhhhhc---cCCHHHHHHHHhcCccccccc----CCCCCcHHHHHHhcCCHHHHHHHHhcCCCcc----
Q 043901 52 LYIR-LGGNHGRKYIKP---LGNEAMCHCTASKDRELISVR----NNDSETPLFLAALHGNMDAFLCLRSFNQAKD---- 119 (331)
Q Consensus 52 ~~~~-~~g~t~Lh~A~~---~g~~~~v~~Ll~~~~~~~~~~----d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~---- 119 (331)
++.+ ..|.|+||.|.. .++.++++.|++.-+..+|.. ...|.||||+|+.+.+.++|++|++.|||+.
T Consensus 136 ~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~ 215 (782)
T KOG3676|consen 136 LNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARAC 215 (782)
T ss_pred cccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhh
Confidence 5666 789999999986 356699999999888766653 3469999999999999999999999999981
Q ss_pred -ccccc-c--------------CCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccch
Q 043901 120 -NRQCR-K--------------NNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLG 183 (331)
Q Consensus 120 -~~~~~-~--------------~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~ 183 (331)
....+ | .-|..||..|+..++.|++++|+++|++ ++.+|..|+|.||..+.+-. .+
T Consensus 216 G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd-~~aqDS~GNTVLH~lVi~~~-------~~ 287 (782)
T KOG3676|consen 216 GAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGAD-PNAQDSNGNTVLHMLVIHFV-------TE 287 (782)
T ss_pred ccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCC-CCccccCCChHHHHHHHHHH-------HH
Confidence 11111 1 2478999999999999999999999998 99999999999999888754 57
Q ss_pred hHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchh
Q 043901 184 LFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKV 263 (331)
Q Consensus 184 ~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~ 263 (331)
+++.++..+.+.. .
T Consensus 288 My~~~L~~ga~~l---------------------------------------------------------------~--- 301 (782)
T KOG3676|consen 288 MYDLALELGANAL---------------------------------------------------------------E--- 301 (782)
T ss_pred HHHHHHhcCCCcc---------------------------------------------------------------c---
Confidence 7777777665400 0
Q ss_pred hHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHHhh
Q 043901 264 QGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDT 301 (331)
Q Consensus 264 ~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ 301 (331)
..+|+.|-|||-+|++.|..++.+.+++.
T Consensus 302 ---------~v~N~qgLTPLtLAaklGk~emf~~ile~ 330 (782)
T KOG3676|consen 302 ---------HVRNNQGLTPLTLAAKLGKKEMFQHILER 330 (782)
T ss_pred ---------cccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence 34577899999999999999999999996
|
|
| >KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.1e-18 Score=160.73 Aligned_cols=147 Identities=16% Similarity=0.098 Sum_probs=124.0
Q ss_pred HHH-HHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcCcccccc-cCCCCCcHHHHHHhcCCHHHHHHHHhcCC
Q 043901 40 LYT-LQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKDRELISV-RNNDSETPLFLAALHGNMDAFLCLRSFNQ 116 (331)
Q Consensus 40 ~v~-Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~-~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~ 116 (331)
.|+ |+.+| .. ...+ +.|-+||.+|+..||..+|..|+.+.++ ++. .|+.+.|+|.+||..|+.+++++|+..|+
T Consensus 772 ~vellv~rg-an-iehrdkkgf~plImaatagh~tvV~~llk~ha~-veaQsdrtkdt~lSlacsggr~~vvelLl~~ga 848 (2131)
T KOG4369|consen 772 EVELLVVRG-AN-IEHRDKKGFVPLIMAATAGHITVVQDLLKAHAD-VEAQSDRTKDTMLSLACSGGRTRVVELLLNAGA 848 (2131)
T ss_pred HHHHHHHhc-cc-ccccccccchhhhhhcccCchHHHHHHHhhhhh-hhhhcccccCceEEEecCCCcchHHHHHHHhhc
Confidence 667 77776 33 4445 8899999999999999999999999888 554 57789999999999999999999999999
Q ss_pred CccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccc--cCCCccHhHHHhcCCCcccccccchhHHHHHhhhcc
Q 043901 117 AKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSV--NENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKT 194 (331)
Q Consensus 117 ~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~--~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~ 194 (331)
+- ..++-...|||.+|...|+.++++.|+..|.. ++.+ .+-|-.||..|.++|+ -.....++..+.+
T Consensus 849 nk---ehrnvsDytPlsla~Sggy~~iI~~llS~Gse-InSrtgSklgisPLmlatmngh-------~~at~~ll~~gsd 917 (2131)
T KOG4369|consen 849 NK---EHRNVSDYTPLSLARSGGYTKIIHALLSSGSE-INSRTGSKLGISPLMLATMNGH-------QAATLSLLQPGSD 917 (2131)
T ss_pred cc---cccchhhcCchhhhcCcchHHHHHHHhhcccc-cccccccccCcchhhhhhhccc-------cHHHHHHhcccch
Confidence 87 77888888999999999999999999999987 6665 4678999999999999 6888888888888
Q ss_pred cCcCCC
Q 043901 195 KGEAND 200 (331)
Q Consensus 195 ~~~~~~ 200 (331)
+.+.+.
T Consensus 918 iNaqIe 923 (2131)
T KOG4369|consen 918 INAQIE 923 (2131)
T ss_pred hccccc
Confidence 876443
|
|
| >KOG0514 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.6e-17 Score=136.47 Aligned_cols=132 Identities=14% Similarity=0.110 Sum_probs=118.4
Q ss_pred ccHHHH-HHhhhCCCcceec-cCCCchhhhhhcc-----CCHHHHHHHHhcCcccccccC-CCCCcHHHHHHhcCCHHHH
Q 043901 37 ETQLYT-LQQQLGKPILYIR-LGGNHGRKYIKPL-----GNEAMCHCTASKDRELISVRN-NDSETPLFLAALHGNMDAF 108 (331)
Q Consensus 37 ~t~~v~-Ll~~~~~~~~~~~-~~g~t~Lh~A~~~-----g~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A~~~~~~~~~ 108 (331)
+.++|+ ||+.+ ...++.+ .-|.||+++|+.. .+.++|.-|...|. +|.+- ..|.|+|++|+.+|+.+++
T Consensus 280 NF~VV~~LLDSg-vC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgn--VNaKAsQ~gQTALMLAVSHGr~d~v 356 (452)
T KOG0514|consen 280 NFDVVSILLDSG-VCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGD--VNAKASQHGQTALMLAVSHGRVDMV 356 (452)
T ss_pred chHHHHHHhccC-cccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccC--cchhhhhhcchhhhhhhhcCcHHHH
Confidence 444999 99999 6667777 8999999998843 46788988888663 77764 4599999999999999999
Q ss_pred HHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCC
Q 043901 109 LCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPT 174 (331)
Q Consensus 109 ~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~ 174 (331)
+.|+..|+|+ |.+|.+|.|+|++|+..|+.|++++|+.....++...|.+|.|+|.+|...|+
T Consensus 357 k~LLacgAdV---NiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh 419 (452)
T KOG0514|consen 357 KALLACGADV---NIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGH 419 (452)
T ss_pred HHHHHccCCC---ccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCc
Confidence 9999999999 99999999999999999999999999999888899999999999999999999
|
|
| >KOG4214 consensus Myotrophin and similar proteins [Transcription] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.5e-17 Score=110.27 Aligned_cols=102 Identities=18% Similarity=0.214 Sum_probs=73.6
Q ss_pred hHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceeccCCCchhhhhhccCCHHHHHHHHhcCcc
Q 043901 4 NSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIRLGGNHGRKYIKPLGNEAMCHCTASKDRE 83 (331)
Q Consensus 4 ~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~ 83 (331)
..+.+++++|.++.|+..+.+.- .++....|++|||||+.+|..+++.+|+..|++
T Consensus 4 ~~~~W~vkNG~~DeVk~~v~~g~------------------------nVn~~~ggR~plhyAAD~GQl~ilefli~iGA~ 59 (117)
T KOG4214|consen 4 MSVAWNVKNGEIDEVKQSVNEGL------------------------NVNEIYGGRTPLHYAADYGQLSILEFLISIGAN 59 (117)
T ss_pred hhHhhhhccCcHHHHHHHHHccc------------------------cHHHHhCCcccchHhhhcchHHHHHHHHHhccc
Confidence 45667778888888877776631 123235777888888888888888888888877
Q ss_pred cccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHH
Q 043901 84 LISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILH 133 (331)
Q Consensus 84 ~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh 133 (331)
++.+|+.|.|||..|+..||.+|+++|++.|++- ..+..+|.+.+.
T Consensus 60 -i~~kDKygITPLLsAvwEGH~~cVklLL~~GAdr---t~~~PdG~~~~e 105 (117)
T KOG4214|consen 60 -IQDKDKYGITPLLSAVWEGHRDCVKLLLQNGADR---TIHAPDGTALIE 105 (117)
T ss_pred -cCCccccCCcHHHHHHHHhhHHHHHHHHHcCccc---ceeCCCchhHHh
Confidence 8888888888888888888888888888888776 555556655543
|
|
| >cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.5e-16 Score=117.92 Aligned_cols=95 Identities=27% Similarity=0.385 Sum_probs=87.6
Q ss_pred ccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHh
Q 043901 87 VRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRL 166 (331)
Q Consensus 87 ~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l 166 (331)
.+|..|.||||+|+..++.+++++|++.|++. +..+..|.+|+|+|+..++.+++++|++.+.. ++..+..|.||+
T Consensus 2 ~~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~---~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~~l 77 (126)
T cd00204 2 ARDEDGRTPLHLAASNGHLEVVKLLLENGADV---NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD-VNARDKDGNTPL 77 (126)
T ss_pred CcCcCCCCHHHHHHHcCcHHHHHHHHHcCCCC---CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHH
Confidence 35678999999999999999999999999987 78899999999999999999999999999986 888889999999
Q ss_pred HHHhcCCCcccccccchhHHHHHhhh
Q 043901 167 HILASKPTAFKRGSRLGLFDRIIHYY 192 (331)
Q Consensus 167 ~~A~~~~~~~~~~~~~~~~~~li~~~ 192 (331)
|+|+..++ .++++.|+..+
T Consensus 78 ~~a~~~~~-------~~~~~~L~~~~ 96 (126)
T cd00204 78 HLAARNGN-------LDVVKLLLKHG 96 (126)
T ss_pred HHHHHcCc-------HHHHHHHHHcC
Confidence 99999998 78888887765
|
The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. |
| >PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-16 Score=113.56 Aligned_cols=89 Identities=20% Similarity=0.269 Sum_probs=78.0
Q ss_pred HHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceeccCCCchhhhhhccCCHHHHHHHHhcCcccc
Q 043901 6 LSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIRLGGNHGRKYIKPLGNEAMCHCTASKDRELI 85 (331)
Q Consensus 6 L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~ 85 (331)
||.||+.|+++.++.+++.... ++. |+||||+|+..|+.+++++|++.|++ +
T Consensus 1 L~~A~~~~~~~~~~~ll~~~~~------------------------~~~---~~~~l~~A~~~~~~~~~~~Ll~~g~~-~ 52 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLEKGAD------------------------INL---GNTALHYAAENGNLEIVKLLLENGAD-I 52 (89)
T ss_dssp HHHHHHTTTHHHHHHHHHTTST------------------------TTS---SSBHHHHHHHTTTHHHHHHHHHTTTC-T
T ss_pred CHHHHHcCCHHHHHHHHHCcCC------------------------CCC---CCCHHHHHHHcCCHHHHHHHHHhccc-c
Confidence 7899999999999999996533 111 78999999999999999999999998 9
Q ss_pred cccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCcccccccc
Q 043901 86 SVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRK 125 (331)
Q Consensus 86 ~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~ 125 (331)
+.+|..|.||||+|+.+|+.+++++|+++|+++ +.+|
T Consensus 53 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~---~~~n 89 (89)
T PF12796_consen 53 NSQDKNGNTALHYAAENGNLEIVKLLLEHGADV---NIRN 89 (89)
T ss_dssp T-BSTTSSBHHHHHHHTTHHHHHHHHHHTTT-T---TSS-
T ss_pred cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CCcC
Confidence 999999999999999999999999999999988 6654
|
These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B .... |
| >KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3e-17 Score=133.62 Aligned_cols=110 Identities=22% Similarity=0.177 Sum_probs=96.8
Q ss_pred HHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcc
Q 043901 75 HCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDL 154 (331)
Q Consensus 75 ~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~ 154 (331)
++-++....++|.-|..|.+|||+|++.|+..+++.|+..|+.+ |.++....||||+|+..|+-++++.|+++.++
T Consensus 17 rlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarv---n~tnmgddtplhlaaahghrdivqkll~~kad- 92 (448)
T KOG0195|consen 17 RLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARV---NSTNMGDDTPLHLAAAHGHRDIVQKLLSRKAD- 92 (448)
T ss_pred EEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhccccc---ccccCCCCcchhhhhhcccHHHHHHHHHHhcc-
Confidence 33344444458999999999999999999999999999999999 99999999999999999999999999999998
Q ss_pred cccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhccc
Q 043901 155 VNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTK 195 (331)
Q Consensus 155 ~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~ 195 (331)
++..+..|+|||||||..|. -.+.+.|+..++.+
T Consensus 93 vnavnehgntplhyacfwgy-------dqiaedli~~ga~v 126 (448)
T KOG0195|consen 93 VNAVNEHGNTPLHYACFWGY-------DQIAEDLISCGAAV 126 (448)
T ss_pred cchhhccCCCchhhhhhhcH-------HHHHHHHHhcccee
Confidence 99999999999999999998 47777777666543
|
|
| >KOG4214 consensus Myotrophin and similar proteins [Transcription] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.7e-16 Score=104.43 Aligned_cols=103 Identities=17% Similarity=0.094 Sum_probs=92.6
Q ss_pred hhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCC
Q 043901 61 GRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEY 140 (331)
Q Consensus 61 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~ 140 (331)
-+.+++.+|..+-|+-.+..|-+ +|..- .|++|||+|+..|+.+++++|+..|+++ +.+|++|.|||-.|++.|+
T Consensus 5 ~~~W~vkNG~~DeVk~~v~~g~n-Vn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i---~~kDKygITPLLsAvwEGH 79 (117)
T KOG4214|consen 5 SVAWNVKNGEIDEVKQSVNEGLN-VNEIY-GGRTPLHYAADYGQLSILEFLISIGANI---QDKDKYGITPLLSAVWEGH 79 (117)
T ss_pred hHhhhhccCcHHHHHHHHHcccc-HHHHh-CCcccchHhhhcchHHHHHHHHHhcccc---CCccccCCcHHHHHHHHhh
Confidence 46788899999999999988855 66553 7999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHhCCcccccccCCCccHhHHH
Q 043901 141 FSIAFQIMRAYPDLVNSVNENGLTRLHIL 169 (331)
Q Consensus 141 ~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A 169 (331)
.++|++|++.|++ -..+..+|.+.+..+
T Consensus 80 ~~cVklLL~~GAd-rt~~~PdG~~~~eat 107 (117)
T KOG4214|consen 80 RDCVKLLLQNGAD-RTIHAPDGTALIEAT 107 (117)
T ss_pred HHHHHHHHHcCcc-cceeCCCchhHHhhc
Confidence 9999999999998 888888898776644
|
|
| >KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.2e-15 Score=135.92 Aligned_cols=125 Identities=18% Similarity=0.181 Sum_probs=114.8
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCccccccc---------C--------------CCCCcHHHHHHhcCCHHHHHHHH
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDRELISVR---------N--------------NDSETPLFLAALHGNMDAFLCLR 112 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~---------d--------------~~g~tpLh~A~~~~~~~~~~~Ll 112 (331)
..|.||||+|+.+.+.++|++|++.|++ ++.+ | ..|+.||.+|+--++.+++++|+
T Consensus 182 Y~GqSaLHiAIv~~~~~~V~lLl~~gAD-V~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl 260 (782)
T KOG3676|consen 182 YYGQSALHIAIVNRDAELVRLLLAAGAD-VHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLL 260 (782)
T ss_pred hcCcchHHHHHHhccHHHHHHHHHcCCc-hhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHH
Confidence 6899999999999999999999999997 7663 1 13789999999999999999999
Q ss_pred hcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCc-ccccccCCCccHhHHHhcCCCcccccccchhHHHHHhh
Q 043901 113 SFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPD-LVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHY 191 (331)
Q Consensus 113 ~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~-~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~ 191 (331)
++|+|+ +++|..|+|.||..+..-..+|.++++++|+. ....+|+.|-|||..|+.-|. .++++.++..
T Consensus 261 ~~gAd~---~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk-------~emf~~ile~ 330 (782)
T KOG3676|consen 261 AHGADP---NAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGK-------KEMFQHILER 330 (782)
T ss_pred hcCCCC---CccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhh-------HHHHHHHHHh
Confidence 999999 99999999999999999999999999999987 456689999999999999999 7999999887
|
|
| >COG0666 Arp FOG: Ankyrin repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.6e-14 Score=119.40 Aligned_cols=126 Identities=25% Similarity=0.300 Sum_probs=116.6
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCC-----HHHHHHHHhcCC--CccccccccCCC
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGN-----MDAFLCLRSFNQ--AKDNRQCRKNNG 128 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~-----~~~~~~Ll~~g~--~~~~~~~~~~~g 128 (331)
..+.+++|.++..+..+++++++..+.+ ++.+|..|.||||+|+..++ .++++.|++.|+ +. .+.+|..|
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~--~~~~~~~g 147 (235)
T COG0666 71 LDGRLPLHSAASKGDDKIVKLLLASGAD-VNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDV--NNLRDEDG 147 (235)
T ss_pred ccccCHHHHHHHcCcHHHHHHHHHcCCC-cccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCC--ccccCCCC
Confidence 5688999999999999999999999998 79999999999999999999 999999999999 33 26679999
Q ss_pred CcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhh
Q 043901 129 ETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYY 192 (331)
Q Consensus 129 ~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~ 192 (331)
.||||+|+..|+.+++++|++.+++ ++.++..|.|+++.|+..++ ..++..++...
T Consensus 148 ~tpl~~A~~~~~~~~~~~ll~~~~~-~~~~~~~g~t~l~~a~~~~~-------~~~~~~l~~~~ 203 (235)
T COG0666 148 NTPLHWAALNGDADIVELLLEAGAD-PNSRNSYGVTALDPAAKNGR-------IELVKLLLDKG 203 (235)
T ss_pred CchhHHHHHcCchHHHHHHHhcCCC-CcccccCCCcchhhhcccch-------HHHHHHHHhcC
Confidence 9999999999999999999999998 99999999999999999998 67887777755
|
|
| >PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-14 Score=91.61 Aligned_cols=53 Identities=26% Similarity=0.404 Sum_probs=23.5
Q ss_pred CCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHH
Q 043901 58 GNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCL 111 (331)
Q Consensus 58 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~L 111 (331)
|+||||+|+..|+.+++++|++.+.+ ++.+|.+|.||||+|+..|+.+++++|
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~d-in~~d~~g~t~lh~A~~~g~~~~~~~L 53 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGAD-INAQDEDGRTPLHYAAKNGNIDIVKFL 53 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSG-TT-B-TTS--HHHHHHHTT-HHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHccCHHHHHHH
Confidence 34455555555555555555554444 444455555555555555555555444
|
... |
| >PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.7e-14 Score=135.02 Aligned_cols=107 Identities=15% Similarity=0.148 Sum_probs=97.7
Q ss_pred chhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcC
Q 043901 60 HGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGE 139 (331)
Q Consensus 60 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~ 139 (331)
+.|+.|+..|+.+++++|++.|++ +|.+|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|
T Consensus 84 ~~L~~aa~~G~~~~vk~LL~~Gad-in~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadv---n~~d~~G~TpLh~A~~~g 159 (664)
T PTZ00322 84 VELCQLAASGDAVGARILLTGGAD-PNCRDYDGRTPLHIACANGHVQVVRVLLEFGADP---TLLDKDGKTPLELAEENG 159 (664)
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHCC
Confidence 458899999999999999999998 9999999999999999999999999999999999 999999999999999999
Q ss_pred CHHHHHHHHHh-------CCcccccccCCCccHhHHHhc
Q 043901 140 YFSIAFQIMRA-------YPDLVNSVNENGLTRLHILAS 171 (331)
Q Consensus 140 ~~~~~~~Ll~~-------~~~~~~~~~~~g~t~l~~A~~ 171 (331)
+.+++++|+++ +++ .+..+..|.+|+..+..
T Consensus 160 ~~~iv~~Ll~~~~~~~~~ga~-~~~~~~~g~~~~~~~~~ 197 (664)
T PTZ00322 160 FREVVQLLSRHSQCHFELGAN-AKPDSFTGKPPSLEDSP 197 (664)
T ss_pred cHHHHHHHHhCCCcccccCCC-CCccccCCCCccchhhh
Confidence 99999999998 665 77777778777765543
|
|
| >PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.3e-14 Score=89.75 Aligned_cols=54 Identities=26% Similarity=0.337 Sum_probs=46.3
Q ss_pred CCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHH
Q 043901 92 SETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIM 148 (331)
Q Consensus 92 g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll 148 (331)
|.||||+|+..|+.+++++|++.|.++ +.+|.+|.||||+|+..|+.+++++|+
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~di---n~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADI---NAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGT---T-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 789999999999999999999999998 999999999999999999999999986
|
... |
| >PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.6e-14 Score=92.16 Aligned_cols=56 Identities=21% Similarity=0.265 Sum_probs=27.3
Q ss_pred HHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHH
Q 043901 77 TASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSA 135 (331)
Q Consensus 77 Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A 135 (331)
||+.++.+++.+|..|.||||+|+.+|+.+++++|++.|+++ +.+|..|+||||+|
T Consensus 1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~---~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADP---NAKDKDGQTPLHYA 56 (56)
T ss_dssp -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--T---T---TTS--HHHH-
T ss_pred CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCC---CCCcCCCCCHHHhC
Confidence 456664447777777788888888888888888777777777 77777778887776
|
|
| >COG0666 Arp FOG: Ankyrin repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.5e-13 Score=110.86 Aligned_cols=130 Identities=26% Similarity=0.286 Sum_probs=115.3
Q ss_pred ccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCC-----HHHHHHHHHhCC--ccccc
Q 043901 85 ISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEY-----FSIAFQIMRAYP--DLVNS 157 (331)
Q Consensus 85 ~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~-----~~~~~~Ll~~~~--~~~~~ 157 (331)
....+..+.+++|.++..+...++.+++..|+++ +.++..|.||||+|+..++ .+++++|++.|+ ...+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~ 142 (235)
T COG0666 66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADV---NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNL 142 (235)
T ss_pred cccCCccccCHHHHHHHcCcHHHHHHHHHcCCCc---ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccc
Confidence 4556677999999999999999999999999998 9999999999999999999 999999999999 55888
Q ss_pred ccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHH
Q 043901 158 VNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLL 237 (331)
Q Consensus 158 ~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 237 (331)
+|..|+||||+|+..++ ..++..++..+.+..
T Consensus 143 ~~~~g~tpl~~A~~~~~-------~~~~~~ll~~~~~~~----------------------------------------- 174 (235)
T COG0666 143 RDEDGNTPLHWAALNGD-------ADIVELLLEAGADPN----------------------------------------- 174 (235)
T ss_pred cCCCCCchhHHHHHcCc-------hHHHHHHHhcCCCCc-----------------------------------------
Confidence 89999999999999998 578877777654432
Q ss_pred HHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHHhh
Q 043901 238 MKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDT 301 (331)
Q Consensus 238 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ 301 (331)
..+..|.|+++.|+..++.++++.+++.
T Consensus 175 ------------------------------------~~~~~g~t~l~~a~~~~~~~~~~~l~~~ 202 (235)
T COG0666 175 ------------------------------------SRNSYGVTALDPAAKNGRIELVKLLLDK 202 (235)
T ss_pred ------------------------------------ccccCCCcchhhhcccchHHHHHHHHhc
Confidence 2355799999999999999999999994
|
|
| >PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-13 Score=88.37 Aligned_cols=55 Identities=22% Similarity=0.223 Sum_probs=32.8
Q ss_pred HHhcC-CCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHH
Q 043901 111 LRSFN-QAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHIL 169 (331)
Q Consensus 111 Ll~~g-~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A 169 (331)
|++.| +++ +.+|..|.||||+|+..|+.+++++|++.|++ ++.+|..|+||+|+|
T Consensus 1 LL~~~~~~~---n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d-~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 1 LLEHGPADV---NAQDKYGNTPLHWAARYGHSEVVRLLLQNGAD-PNAKDKDGQTPLHYA 56 (56)
T ss_dssp -----T--T---T---TTS--HHHHHHHHT-HHHHHHHHHCT---TT---TTS--HHHH-
T ss_pred CCccCcCCC---cCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCC-CCCCcCCCCCHHHhC
Confidence 56777 555 99999999999999999999999999988887 999999999999987
|
|
| >KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.40 E-value=7e-13 Score=116.47 Aligned_cols=104 Identities=17% Similarity=0.091 Sum_probs=91.4
Q ss_pred hhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCH
Q 043901 62 RKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYF 141 (331)
Q Consensus 62 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~ 141 (331)
|.-|+..|-+++|+-++..-.+ +...|..|.|+||-|+-.||.+||++|+++|+++ |..|.+||||||+|+.+++.
T Consensus 554 LLDaaLeGEldlVq~~i~ev~D-pSqpNdEGITaLHNAiCaghyeIVkFLi~~ganV---Na~DSdGWTPLHCAASCNnv 629 (752)
T KOG0515|consen 554 LLDAALEGELDLVQRIIYEVTD-PSQPNDEGITALHNAICAGHYEIVKFLIEFGANV---NAADSDGWTPLHCAASCNNV 629 (752)
T ss_pred HHhhhhcchHHHHHHHHHhhcC-CCCCCccchhHHhhhhhcchhHHHHHHHhcCCcc---cCccCCCCchhhhhhhcCch
Confidence 4457889999999999987665 8889999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHhCCcccccccCCCccHhHHH
Q 043901 142 SIAFQIMRAYPDLVNSVNENGLTRLHIL 169 (331)
Q Consensus 142 ~~~~~Ll~~~~~~~~~~~~~g~t~l~~A 169 (331)
-+++.|++.|+...-..-.++.|+..-.
T Consensus 630 ~~ckqLVe~GaavfAsTlSDmeTa~eKC 657 (752)
T KOG0515|consen 630 PMCKQLVESGAAVFASTLSDMETAAEKC 657 (752)
T ss_pred HHHHHHHhccceEEeeecccccchhhhc
Confidence 9999999999983333445677766543
|
|
| >KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.6e-12 Score=104.98 Aligned_cols=120 Identities=16% Similarity=0.051 Sum_probs=103.4
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcC
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKD 81 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 81 (331)
.++|+.++-+|+.+....++..- ..++.. ..|+|+|..|+..|+.++++.|++.|
T Consensus 13 ~~~Lle~i~Kndt~~a~~LLs~v------------------------r~vn~~D~sGMs~LahAaykGnl~~v~lll~~g 68 (396)
T KOG1710|consen 13 KSPLLEAIDKNDTEAALALLSTV------------------------RQVNQRDPSGMSVLAHAAYKGNLTLVELLLELG 68 (396)
T ss_pred hhHHHHHHccCcHHHHHHHHHHh------------------------hhhhccCCCcccHHHHHHhcCcHHHHHHHHHhC
Confidence 46789999999999888888762 214455 89999999999999999999999999
Q ss_pred cccccc-cCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHh
Q 043901 82 RELISV-RNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRA 150 (331)
Q Consensus 82 ~~~~~~-~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ 150 (331)
++ +|. .+..+.||||+|+.+|+.++.++|++.|+.. ...|.-|+|+-..|+.-|+.++|..+-++
T Consensus 69 aD-vN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~---~~vNsvgrTAaqmAAFVG~H~CV~iINN~ 134 (396)
T KOG1710|consen 69 AD-VNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARM---YLVNSVGRTAAQMAAFVGHHECVAIINNH 134 (396)
T ss_pred CC-cCcccccccccHHHHHHHcCCchHHHHHHhccCcc---ccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence 98 655 5667899999999999999999999999988 88888999999999999999998887554
|
|
| >KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.1e-12 Score=113.56 Aligned_cols=119 Identities=15% Similarity=0.040 Sum_probs=99.6
Q ss_pred HHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcCccc
Q 043901 6 LSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKDREL 84 (331)
Q Consensus 6 L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~ 84 (331)
|..|+..|.+|.|..++.+- +..... ..|-|+||-|+-.||.+||+|||+.|++
T Consensus 554 LLDaaLeGEldlVq~~i~ev------------------------~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~gan- 608 (752)
T KOG0515|consen 554 LLDAALEGELDLVQRIIYEV------------------------TDPSQPNDEGITALHNAICAGHYEIVKFLIEFGAN- 608 (752)
T ss_pred HHhhhhcchHHHHHHHHHhh------------------------cCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCc-
Confidence 67788888888888877652 334444 7799999999999999999999999998
Q ss_pred ccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCcccccc-ccCCCCcHHHHH--HhcCCHHHHHHHHHhCC
Q 043901 85 ISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQC-RKNNGETILHSA--ISGEYFSIAFQIMRAYP 152 (331)
Q Consensus 85 ~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~-~~~~g~t~Lh~A--~~~~~~~~~~~Ll~~~~ 152 (331)
+|..|.+|+||||.|+.-++..+++.|++.|+-+ .+ +-.++.|+..-+ ...|+..|.+||.....
T Consensus 609 VNa~DSdGWTPLHCAASCNnv~~ckqLVe~Gaav---fAsTlSDmeTa~eKCee~eeGY~~CsqyL~~vqe 676 (752)
T KOG0515|consen 609 VNAADSDGWTPLHCAASCNNVPMCKQLVESGAAV---FASTLSDMETAAEKCEEMEEGYDQCSQYLYGVQE 676 (752)
T ss_pred ccCccCCCCchhhhhhhcCchHHHHHHHhccceE---EeeecccccchhhhcchhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999977 54 456778887654 45688999999976543
|
|
| >KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.2e-12 Score=102.83 Aligned_cols=120 Identities=16% Similarity=0.022 Sum_probs=109.2
Q ss_pred CCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCcccccc-ccCCCCcHHHHH
Q 043901 57 GGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQC-RKNNGETILHSA 135 (331)
Q Consensus 57 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~-~~~~g~t~Lh~A 135 (331)
.-..||..+...|..+-...|++.-.. +|..|..|.|||..|+..|+.+++++|++.|+|+ |. +...+.||||.|
T Consensus 11 ~~~~~Lle~i~Kndt~~a~~LLs~vr~-vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDv---N~~qhg~~YTpLmFA 86 (396)
T KOG1710|consen 11 APKSPLLEAIDKNDTEAALALLSTVRQ-VNQRDPSGMSVLAHAAYKGNLTLVELLLELGADV---NDKQHGTLYTPLMFA 86 (396)
T ss_pred chhhHHHHHHccCcHHHHHHHHHHhhh-hhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCc---CcccccccccHHHHH
Confidence 346799999999999999999997555 9999999999999999999999999999999998 76 567899999999
Q ss_pred HhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHH
Q 043901 136 ISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRI 188 (331)
Q Consensus 136 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~l 188 (331)
+-+|+.++.++|++.|+. ....+.-|+|+-..|+.-|+ .+++..+
T Consensus 87 ALSGn~dvcrllldaGa~-~~~vNsvgrTAaqmAAFVG~-------H~CV~iI 131 (396)
T KOG1710|consen 87 ALSGNQDVCRLLLDAGAR-MYLVNSVGRTAAQMAAFVGH-------HECVAII 131 (396)
T ss_pred HHcCCchHHHHHHhccCc-cccccchhhhHHHHHHHhcc-------hHHHHHH
Confidence 999999999999999999 99999999999999999998 5666554
|
|
| >PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.6e-12 Score=120.38 Aligned_cols=104 Identities=14% Similarity=0.096 Sum_probs=88.1
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcCcc
Q 043901 5 SLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKDRE 83 (331)
Q Consensus 5 ~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~ 83 (331)
+|+.|+..|+.+.++.|++.+. + ++.+ ..|.||||+|+..|+.+++++|++.|++
T Consensus 85 ~L~~aa~~G~~~~vk~LL~~Ga-----------------------d-in~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gad 140 (664)
T PTZ00322 85 ELCQLAASGDAVGARILLTGGA-----------------------D-PNCRDYDGRTPLHIACANGHVQVVRVLLEFGAD 140 (664)
T ss_pred HHHHHHHcCCHHHHHHHHHCCC-----------------------C-CCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCC
Confidence 4777888888888777776532 2 4555 8899999999999999999999999998
Q ss_pred cccccCCCCCcHHHHHHhcCCHHHHHHHHhc-------CCCccccccccCCCCcHHHHHH
Q 043901 84 LISVRNNDSETPLFLAALHGNMDAFLCLRSF-------NQAKDNRQCRKNNGETILHSAI 136 (331)
Q Consensus 84 ~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~-------g~~~~~~~~~~~~g~t~Lh~A~ 136 (331)
++.+|..|.||||+|+..|+.+++++|+++ |++. +..+..|.+|+..+.
T Consensus 141 -vn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~---~~~~~~g~~~~~~~~ 196 (664)
T PTZ00322 141 -PTLLDKDGKTPLELAEENGFREVVQLLSRHSQCHFELGANA---KPDSFTGKPPSLEDS 196 (664)
T ss_pred -CCCCCCCCCCHHHHHHHCCcHHHHHHHHhCCCcccccCCCC---CccccCCCCccchhh
Confidence 999999999999999999999999999998 7777 777777777765444
|
|
| >KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-10 Score=107.59 Aligned_cols=88 Identities=18% Similarity=0.204 Sum_probs=52.7
Q ss_pred cCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccC-CCCcHHHHHHhcCCHHHHHHHHHhCCcccccc
Q 043901 80 KDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKN-NGETILHSAISGEYFSIAFQIMRAYPDLVNSV 158 (331)
Q Consensus 80 ~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~-~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~ 158 (331)
.+.+..|.+|..|+|+||+|+..+..+++++|+++|+++ +.+|. .|+||||.|+..|++|++-.|+++|.. +..+
T Consensus 40 ~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv---~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S-L~i~ 115 (1267)
T KOG0783|consen 40 SCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDV---FVQDEESGYTALHRAIYYGNIDCASLLLSKGRS-LRIK 115 (1267)
T ss_pred hhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCcee---eeccccccchHhhHhhhhchHHHHHHHHhcCCc-eEEe
Confidence 334445556666666666666666666666666666655 55543 556666666666666666666666655 6666
Q ss_pred cCCCccHhHHHhc
Q 043901 159 NENGLTRLHILAS 171 (331)
Q Consensus 159 ~~~g~t~l~~A~~ 171 (331)
|++|.+||...++
T Consensus 116 Dkeglsplq~~~r 128 (1267)
T KOG0783|consen 116 DKEGLSPLQFLSR 128 (1267)
T ss_pred cccCCCHHHHHhh
Confidence 6666666665555
|
|
| >KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2e-09 Score=95.93 Aligned_cols=120 Identities=16% Similarity=0.120 Sum_probs=101.6
Q ss_pred hHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcCc
Q 043901 4 NSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKDR 82 (331)
Q Consensus 4 ~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~ 82 (331)
+.+.+|+..+|+-.+.+....+.+ +-.+ .+..+.||||+..|+-|+|+|++++++
T Consensus 868 eeil~av~~~D~~klqE~h~~gg~------------------------ll~~~~~~~sllh~a~~tg~~eivkyildh~p 923 (1004)
T KOG0782|consen 868 EEILRAVLSSDLMKLQETHLNGGS------------------------LLIQGPDHCSLLHYAAKTGNGEIVKYILDHGP 923 (1004)
T ss_pred HHHHHHHHhccHHHHHHHHhcCCc------------------------eEeeCcchhhHHHHHHhcCChHHHHHHHhcCC
Confidence 346777777776666665555432 3344 677899999999999999999999987
Q ss_pred -ccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHh
Q 043901 83 -ELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRA 150 (331)
Q Consensus 83 -~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~ 150 (331)
+.+++.|..|.|+||-|+..++..+..+|++.|+.+ ..+|..|.||-..|-+.|..+++-||-++
T Consensus 924 ~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl---~ktd~kg~tp~eraqqa~d~dlaayle~r 989 (1004)
T KOG0782|consen 924 SELLDMADETGETALHKAACQRNRAVCQLLVDAGASL---RKTDSKGKTPQERAQQAGDPDLAAYLESR 989 (1004)
T ss_pred HHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhh---eecccCCCChHHHHHhcCCchHHHHHhhh
Confidence 447888999999999999999999999999999998 89999999999999999999999999664
|
|
| >KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.7e-10 Score=102.24 Aligned_cols=84 Identities=15% Similarity=0.132 Sum_probs=76.9
Q ss_pred Ccceec-cCCCchhhhhhccCCHHHHHHHHhcCcccccccCC-CCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCC
Q 043901 50 PILYIR-LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNN-DSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNN 127 (331)
Q Consensus 50 ~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~-~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~ 127 (331)
...+.. ..|+|+||+|+..|..++++||+++|.+ ++.+|. .|.||||-|+.+|+.+|+-.|+++|+.+ ..+|++
T Consensus 43 n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGid-v~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL---~i~Dke 118 (1267)
T KOG0783|consen 43 NLANIKDRYGRTALHIAVSENKNSFLRWLLQHGID-VFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSL---RIKDKE 118 (1267)
T ss_pred hhhhHHHhhccceeeeeeccchhHHHHHHHhcCce-eeeccccccchHhhHhhhhchHHHHHHHHhcCCce---EEeccc
Confidence 334555 7899999999999999999999999998 999987 4999999999999999999999999988 999999
Q ss_pred CCcHHHHHHh
Q 043901 128 GETILHSAIS 137 (331)
Q Consensus 128 g~t~Lh~A~~ 137 (331)
|.+||..-++
T Consensus 119 glsplq~~~r 128 (1267)
T KOG0783|consen 119 GLSPLQFLSR 128 (1267)
T ss_pred CCCHHHHHhh
Confidence 9999988776
|
|
| >PF13606 Ank_3: Ankyrin repeat | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.2e-09 Score=59.48 Aligned_cols=30 Identities=27% Similarity=0.386 Sum_probs=27.7
Q ss_pred CCchHHHHHHhcChHHHHHHHHhhCCccccc
Q 043901 278 RNETAILIAAKMGVAEMVKKILDTFPVAMQD 308 (331)
Q Consensus 278 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~ 308 (331)
+|+||||+|++.|+.|++++|++ .|+|+|.
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~-~gadvn~ 30 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLE-HGADVNA 30 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHH-cCCCCCC
Confidence 48999999999999999999999 6999874
|
|
| >PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.3e-09 Score=60.13 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=30.8
Q ss_pred CCchHHHHHHhcChHHHHHHHHhhCCcccccccc
Q 043901 278 RNETAILIAAKMGVAEMVKKILDTFPVAMQDMDS 311 (331)
Q Consensus 278 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~ 311 (331)
+|+||||+|+..|+.+++++|++ .|++++.+|+
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~-~ga~~~~~d~ 33 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLK-HGADINARDN 33 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHH-TTSCTTCBCT
T ss_pred CcccHHHHHHHHHHHHHHHHHHH-CcCCCCCCCC
Confidence 49999999999999999999999 7999998874
|
Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A .... |
| >PF13606 Ank_3: Ankyrin repeat | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.7e-09 Score=56.27 Aligned_cols=27 Identities=33% Similarity=0.441 Sum_probs=15.7
Q ss_pred CCcHHHHHHhcCCHHHHHHHHhcCCCc
Q 043901 92 SETPLFLAALHGNMDAFLCLRSFNQAK 118 (331)
Q Consensus 92 g~tpLh~A~~~~~~~~~~~Ll~~g~~~ 118 (331)
|+||||+|+.+|+.+++++|+++|+++
T Consensus 2 G~T~Lh~A~~~g~~e~v~~Ll~~gadv 28 (30)
T PF13606_consen 2 GNTPLHLAASNGNIEIVKYLLEHGADV 28 (30)
T ss_pred CCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence 555555555555555555555555554
|
|
| >PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.3e-08 Score=57.01 Aligned_cols=27 Identities=30% Similarity=0.304 Sum_probs=16.1
Q ss_pred CCcHHHHHHhcCCHHHHHHHHhcCCCc
Q 043901 92 SETPLFLAALHGNMDAFLCLRSFNQAK 118 (331)
Q Consensus 92 g~tpLh~A~~~~~~~~~~~Ll~~g~~~ 118 (331)
|.||||+|+..|+.+++++|+++|+++
T Consensus 2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~ 28 (33)
T PF00023_consen 2 GNTPLHYAAQRGHPDIVKLLLKHGADI 28 (33)
T ss_dssp SBBHHHHHHHTTCHHHHHHHHHTTSCT
T ss_pred cccHHHHHHHHHHHHHHHHHHHCcCCC
Confidence 556666666666666666666665555
|
Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A .... |
| >KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.2e-08 Score=86.25 Aligned_cols=85 Identities=19% Similarity=0.179 Sum_probs=72.1
Q ss_pred hhhhhhccCCHHHHHHHHhcCcccccccCC-CCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcC
Q 043901 61 GRKYIKPLGNEAMCHCTASKDRELISVRNN-DSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGE 139 (331)
Q Consensus 61 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~-~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~ 139 (331)
-||-.++.|+.+..--||..|++ +|..+. .|.||||.|++.|...=+++|.-+|+|+ +..|.+|.||+.+|-..|
T Consensus 136 QLhasvRt~nlet~LRll~lGA~-~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~---~a~d~~GmtP~~~AR~~g 211 (669)
T KOG0818|consen 136 QLHSSVRTGNLETCLRLLSLGAQ-ANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADP---GAQDSSGMTPVDYARQGG 211 (669)
T ss_pred HHHHHhhcccHHHHHHHHHcccc-cCCCCcccCCchhHHHHhccchhhhhHHhhccCCC---CCCCCCCCcHHHHHHhcC
Confidence 37888889999988888888887 777554 5889999999999988889999999988 889999999999999999
Q ss_pred CHHHHHHHHH
Q 043901 140 YFSIAFQIMR 149 (331)
Q Consensus 140 ~~~~~~~Ll~ 149 (331)
+-++++.|++
T Consensus 212 H~~laeRl~e 221 (669)
T KOG0818|consen 212 HHELAERLVE 221 (669)
T ss_pred chHHHHHHHH
Confidence 8887777766
|
|
| >KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.1e-08 Score=87.71 Aligned_cols=89 Identities=17% Similarity=0.128 Sum_probs=63.6
Q ss_pred CCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhc-CCCccccccccCCCCcHHHHHH
Q 043901 58 GNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSF-NQAKDNRQCRKNNGETILHSAI 136 (331)
Q Consensus 58 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~~~g~t~Lh~A~ 136 (331)
+..++.+|+..|++..++-+.-.|.+ ++.+|.+.+|+||.|+..|+.+++++|++. +.++ +.+|..|+|||.-|.
T Consensus 506 ~~i~~~~aa~~GD~~alrRf~l~g~D-~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~---~~kDRw~rtPlDdA~ 581 (622)
T KOG0506|consen 506 TVINVMYAAKNGDLSALRRFALQGMD-LETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDP---DPKDRWGRTPLDDAK 581 (622)
T ss_pred chhhhhhhhhcCCHHHHHHHHHhccc-ccccccccchhheeecccCceeHHHHHHHHHcCCC---ChhhccCCCcchHhH
Confidence 34566777777777777766666666 777777777777777777777777777765 3444 677777777777777
Q ss_pred hcCCHHHHHHHHHh
Q 043901 137 SGEYFSIAFQIMRA 150 (331)
Q Consensus 137 ~~~~~~~~~~Ll~~ 150 (331)
..++.+++++|-+.
T Consensus 582 ~F~h~~v~k~L~~~ 595 (622)
T KOG0506|consen 582 HFKHKEVVKLLEEA 595 (622)
T ss_pred hcCcHHHHHHHHHH
Confidence 77777777777664
|
|
| >KOG0522 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.5e-08 Score=86.00 Aligned_cols=90 Identities=22% Similarity=0.216 Sum_probs=75.5
Q ss_pred chhhhhhccCCHH-HHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhc
Q 043901 60 HGRKYIKPLGNEA-MCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISG 138 (331)
Q Consensus 60 t~Lh~A~~~g~~~-~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~ 138 (331)
.|+|+++.....+ +.+.|...-+..++.+|..|.||||+|+..|+.+.++.|+..|+++ ..+|+.|++|||.|+..
T Consensus 22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv---~~kN~~gWs~L~EAv~~ 98 (560)
T KOG0522|consen 22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADV---SIKNNEGWSPLHEAVST 98 (560)
T ss_pred cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCc---cccccccccHHHHHHHc
Confidence 4599999776654 4444444333348899999999999999999999999999999998 89999999999999999
Q ss_pred CCHHHHHHHHHhCC
Q 043901 139 EYFSIAFQIMRAYP 152 (331)
Q Consensus 139 ~~~~~~~~Ll~~~~ 152 (331)
|+..++..++.+..
T Consensus 99 g~~q~i~~vlr~~~ 112 (560)
T KOG0522|consen 99 GNEQIITEVLRHLK 112 (560)
T ss_pred CCHHHHHHHHHHhH
Confidence 99998888887653
|
|
| >KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.7e-08 Score=87.05 Aligned_cols=91 Identities=15% Similarity=0.110 Sum_probs=83.3
Q ss_pred CCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHH
Q 043901 90 NDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHIL 169 (331)
Q Consensus 90 ~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A 169 (331)
.++..++.+|+..|+...++.+.-.|.|. +.+|.+.+|+||.|+..|+.+++++|++....+++.+|..|+|||.-|
T Consensus 504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~---~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA 580 (622)
T KOG0506|consen 504 NDTVINVMYAAKNGDLSALRRFALQGMDL---ETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDA 580 (622)
T ss_pred ccchhhhhhhhhcCCHHHHHHHHHhcccc---cccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHh
Confidence 45667999999999999999999999998 999999999999999999999999999998888999999999999999
Q ss_pred hcCCCcccccccchhHHHHHh
Q 043901 170 ASKPTAFKRGSRLGLFDRIIH 190 (331)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~li~ 190 (331)
...++ .++++.|-.
T Consensus 581 ~~F~h-------~~v~k~L~~ 594 (622)
T KOG0506|consen 581 KHFKH-------KEVVKLLEE 594 (622)
T ss_pred HhcCc-------HHHHHHHHH
Confidence 99999 577766644
|
|
| >KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.1e-07 Score=85.10 Aligned_cols=108 Identities=15% Similarity=0.100 Sum_probs=92.0
Q ss_pred hhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHH
Q 043901 64 YIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSI 143 (331)
Q Consensus 64 ~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~ 143 (331)
-|+..+++--+.-.-.+|.+ +-.++.+.+|.||+|+..|+-++++|++.+|.. +.++..+..|.|+||.|+..++-.+
T Consensus 872 ~av~~~D~~klqE~h~~gg~-ll~~~~~~~sllh~a~~tg~~eivkyildh~p~-elld~~de~get~lhkaa~~~~r~v 949 (1004)
T KOG0782|consen 872 RAVLSSDLMKLQETHLNGGS-LLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPS-ELLDMADETGETALHKAACQRNRAV 949 (1004)
T ss_pred HHHHhccHHHHHHHHhcCCc-eEeeCcchhhHHHHHHhcCChHHHHHHHhcCCH-HHHHHHhhhhhHHHHHHHHhcchHH
Confidence 34444444333444445666 777888999999999999999999999999987 3678889999999999999999999
Q ss_pred HHHHHHhCCcccccccCCCccHhHHHhcCCC
Q 043901 144 AFQIMRAYPDLVNSVNENGLTRLHILASKPT 174 (331)
Q Consensus 144 ~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~ 174 (331)
.++|++.|++ +...|..|.||-.-|-+.+.
T Consensus 950 c~~lvdagas-l~ktd~kg~tp~eraqqa~d 979 (1004)
T KOG0782|consen 950 CQLLVDAGAS-LRKTDSKGKTPQERAQQAGD 979 (1004)
T ss_pred HHHHHhcchh-heecccCCCChHHHHHhcCC
Confidence 9999999999 89999999999999999887
|
|
| >KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.4e-07 Score=84.55 Aligned_cols=60 Identities=23% Similarity=0.131 Sum_probs=33.0
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCc
Q 043901 91 DSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPD 153 (331)
Q Consensus 91 ~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~ 153 (331)
+|+|+||+|+..|+..+.++|+=+|+|+ ..+|..|+|+|.||-+.|.-++++.|+.+|..
T Consensus 660 ~grt~LHLa~~~gnVvl~QLLiWyg~dv---~~rda~g~t~l~yar~a~sqec~d~llq~gcp 719 (749)
T KOG0705|consen 660 DGRTALHLAARKGNVVLAQLLIWYGVDV---MARDAHGRTALFYARQAGSQECIDVLLQYGCP 719 (749)
T ss_pred CCcchhhhhhhhcchhHHHHHHHhCccc---eecccCCchhhhhHhhcccHHHHHHHHHcCCC
Confidence 4455555555555555555555555555 55555555555555555555555555555543
|
|
| >KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.2e-07 Score=81.81 Aligned_cols=86 Identities=22% Similarity=0.218 Sum_probs=76.2
Q ss_pred cccCCCCCc------HHHHHHhcCCHHHHHHHHhcCCCccccccc-cCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccc
Q 043901 86 SVRNNDSET------PLFLAALHGNMDAFLCLRSFNQAKDNRQCR-KNNGETILHSAISGEYFSIAFQIMRAYPDLVNSV 158 (331)
Q Consensus 86 ~~~d~~g~t------pLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~-~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~ 158 (331)
..+|.+|.| -||..++.|..+..-.|+..|+++ |.. -..|.||||.|++.|+..-+++|.-+|++ +...
T Consensus 121 ~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~---N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD-~~a~ 196 (669)
T KOG0818|consen 121 PCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQA---NFFHPEKGNTPLHVAAKAGQILQAELLAVYGAD-PGAQ 196 (669)
T ss_pred CCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHccccc---CCCCcccCCchhHHHHhccchhhhhHHhhccCC-CCCC
Confidence 345666655 489999999999999999999998 654 35799999999999999999999999999 9999
Q ss_pred cCCCccHhHHHhcCCCc
Q 043901 159 NENGLTRLHILASKPTA 175 (331)
Q Consensus 159 ~~~g~t~l~~A~~~~~~ 175 (331)
|.+|+||+.+|-..||.
T Consensus 197 d~~GmtP~~~AR~~gH~ 213 (669)
T KOG0818|consen 197 DSSGMTPVDYARQGGHH 213 (669)
T ss_pred CCCCCcHHHHHHhcCch
Confidence 99999999999999993
|
|
| >KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.5e-05 Score=73.93 Aligned_cols=126 Identities=14% Similarity=-0.015 Sum_probs=99.2
Q ss_pred hHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcCc
Q 043901 4 NSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKDR 82 (331)
Q Consensus 4 ~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~ 82 (331)
+....|+.+||...|++.++.... . .-..++. .-|+++|+.|..+.+.|++.+|++...
T Consensus 27 ~~fL~a~E~gd~~~V~k~l~~~~~-~-------------------~lninc~d~lGr~al~iai~nenle~~eLLl~~~~ 86 (822)
T KOG3609|consen 27 KGFLLAHENGDVPLVAKALEYKAV-S-------------------KLNINCRDPLGRLALHIAIDNENLELQELLLDTSS 86 (822)
T ss_pred HHHHHHHHcCChHHHHHHHHhccc-c-------------------ccchhccChHhhhceecccccccHHHHHHHhcCcc
Confidence 567788999999999999987544 1 1224555 789999999999999999999999775
Q ss_pred ccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCcc-------ccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCccc
Q 043901 83 ELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKD-------NRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLV 155 (331)
Q Consensus 83 ~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~-------~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~ 155 (331)
. . ..+|.+|+..|..++++.++.+...-. .-...-..+.||+..|+..+++||++.|+.+|+. +
T Consensus 87 ~-~-------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~-i 157 (822)
T KOG3609|consen 87 E-E-------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHC-I 157 (822)
T ss_pred c-c-------chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCC-C
Confidence 5 2 357999999999999999998754320 0012234678999999999999999999999988 4
Q ss_pred ccc
Q 043901 156 NSV 158 (331)
Q Consensus 156 ~~~ 158 (331)
...
T Consensus 158 ~~P 160 (822)
T KOG3609|consen 158 PIP 160 (822)
T ss_pred CCC
Confidence 443
|
|
| >KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.37 E-value=9.3e-07 Score=79.42 Aligned_cols=75 Identities=15% Similarity=0.152 Sum_probs=55.4
Q ss_pred HHhhhCCCcceec---cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCc
Q 043901 43 LQQQLGKPILYIR---LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAK 118 (331)
Q Consensus 43 Ll~~~~~~~~~~~---~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~ 118 (331)
||.+|....++.. .+|+|+||+||+.|++.+.++|+=.|++ +..+|..|+|+|.||-+.|..+|+..|+++|...
T Consensus 643 LLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~d-v~~rda~g~t~l~yar~a~sqec~d~llq~gcp~ 720 (749)
T KOG0705|consen 643 LLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVD-VMARDAHGRTALFYARQAGSQECIDVLLQYGCPD 720 (749)
T ss_pred HHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCcc-ceecccCCchhhhhHhhcccHHHHHHHHHcCCCc
Confidence 5666643333333 5678888888888888888888877776 7788888888888888888888888888887654
|
|
| >KOG0522 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.2e-06 Score=78.16 Aligned_cols=88 Identities=19% Similarity=0.163 Sum_probs=71.9
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcCcc
Q 043901 5 SLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKDRE 83 (331)
Q Consensus 5 ~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~ 83 (331)
++|+++...+++.+...+.... ...+... ..|.||||+|+..|+.+.++.|+..+++
T Consensus 23 ~lh~~~~~~~~~sl~~el~~~~----------------------~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad 80 (560)
T KOG0522|consen 23 PLHWAVVTTDSDSLEQELLAKV----------------------SLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD 80 (560)
T ss_pred ccchhhhccchhhHHHHHhhhh----------------------hceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCC
Confidence 3677777777777776665531 1234445 7789999999999999999999999998
Q ss_pred cccccCCCCCcHHHHHHhcCCHHHHHHHHhcC
Q 043901 84 LISVRNNDSETPLFLAALHGNMDAFLCLRSFN 115 (331)
Q Consensus 84 ~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g 115 (331)
+..+|..|++|||.|+..|+..++..++.+-
T Consensus 81 -v~~kN~~gWs~L~EAv~~g~~q~i~~vlr~~ 111 (560)
T KOG0522|consen 81 -VSIKNNEGWSPLHEAVSTGNEQIITEVLRHL 111 (560)
T ss_pred -ccccccccccHHHHHHHcCCHHHHHHHHHHh
Confidence 9999999999999999999998888777653
|
|
| >KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.3e-06 Score=84.26 Aligned_cols=79 Identities=23% Similarity=0.196 Sum_probs=58.8
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHh
Q 043901 91 DSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILA 170 (331)
Q Consensus 91 ~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~ 170 (331)
.|.|+||.|+..|..-++++|++.|+++ |..|..|.+|+|.+...|+...+..|+++|+. .++.+.+|++|+++|.
T Consensus 655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~v---n~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~-~~a~~~~~~~~l~~a~ 730 (785)
T KOG0521|consen 655 IGCSLLHVAVGTGDSGAVELLLQNGADV---NALDSKGRTPLHHATASGHTSIACLLLKRGAD-PNAFDPDGKLPLDIAM 730 (785)
T ss_pred cccchhhhhhccchHHHHHHHHhcCCcc---hhhhccCCCcchhhhhhcccchhhhhcccccc-ccccCccCcchhhHHh
Confidence 4677777777777777777777777776 77777777777777777777777777777776 7777777777777775
Q ss_pred cCC
Q 043901 171 SKP 173 (331)
Q Consensus 171 ~~~ 173 (331)
...
T Consensus 731 ~~~ 733 (785)
T KOG0521|consen 731 EAA 733 (785)
T ss_pred hhc
Confidence 543
|
|
| >KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.6e-05 Score=75.23 Aligned_cols=33 Identities=15% Similarity=0.184 Sum_probs=28.1
Q ss_pred CCchHHHHHHhcChHHHHHHHHhhCCcccccccc
Q 043901 278 RNETAILIAAKMGVAEMVKKILDTFPVAMQDMDS 311 (331)
Q Consensus 278 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~ 311 (331)
-+.|||.+||..+++|+++.|++ .|+++-....
T Consensus 130 ~ditPliLAAh~NnyEil~~Ll~-kg~~i~~PH~ 162 (822)
T KOG3609|consen 130 PDITPLMLAAHLNNFEILQCLLT-RGHCIPIPHD 162 (822)
T ss_pred CCccHHHHHHHhcchHHHHHHHH-cCCCCCCCcc
Confidence 47999999999999999999999 4877665543
|
|
| >KOG0511 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=7.9e-06 Score=70.07 Aligned_cols=69 Identities=14% Similarity=0.106 Sum_probs=59.2
Q ss_pred hhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHH
Q 043901 61 GRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILH 133 (331)
Q Consensus 61 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh 133 (331)
-|++||+.|..+.|++|++.|.+ +|..|....+||++|+.-||.+++++|++.|+-- ..-.-+|.-.+.
T Consensus 39 elceacR~GD~d~v~~LVetgvn-VN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC---~rdtf~G~RC~Y 107 (516)
T KOG0511|consen 39 ELCEACRAGDVDRVRYLVETGVN-VNAVDRFDSSPLYLASLCGHEDVVKLLLENGAIC---SRDTFDGDRCHY 107 (516)
T ss_pred HHHHHhhcccHHHHHHHHHhCCC-cchhhcccccHHHHHHHcCcHHHHHHHHHcCCcc---cccccCcchhhh
Confidence 48999999999999999999988 9999999999999999999999999999999954 223335555533
|
|
| >KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.98 E-value=5.1e-06 Score=80.22 Aligned_cols=89 Identities=13% Similarity=0.109 Sum_probs=82.5
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHH
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSA 135 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A 135 (331)
..|.|+||.|+..|..-++.+|+++|++ +|..|..|.||+|.+...|+...+..|++.|++. +..+.+|.+|+++|
T Consensus 654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~-vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~---~a~~~~~~~~l~~a 729 (785)
T KOG0521|consen 654 CIGCSLLHVAVGTGDSGAVELLLQNGAD-VNALDSKGRTPLHHATASGHTSIACLLLKRGADP---NAFDPDGKLPLDIA 729 (785)
T ss_pred hcccchhhhhhccchHHHHHHHHhcCCc-chhhhccCCCcchhhhhhcccchhhhhccccccc---cccCccCcchhhHH
Confidence 6789999999999999999999999998 9999999999999999999999999999999999 99999999999999
Q ss_pred HhcCCHHHHHHHH
Q 043901 136 ISGEYFSIAFQIM 148 (331)
Q Consensus 136 ~~~~~~~~~~~Ll 148 (331)
....+.+++-++.
T Consensus 730 ~~~~~~d~~~l~~ 742 (785)
T KOG0521|consen 730 MEAANADIVLLLR 742 (785)
T ss_pred hhhccccHHHHHh
Confidence 8886666665554
|
|
| >KOG0511 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.4e-05 Score=67.19 Aligned_cols=70 Identities=11% Similarity=-0.080 Sum_probs=60.1
Q ss_pred cHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhH
Q 043901 94 TPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLH 167 (331)
Q Consensus 94 tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~ 167 (331)
--|..|++.|+.+.+++|++.|.++ |..|.-..+||.+|+-.||.+++++|+++|+. ...-.-+|...+.
T Consensus 38 ~elceacR~GD~d~v~~LVetgvnV---N~vD~fD~spL~lAsLcGHe~vvklLLenGAi-C~rdtf~G~RC~Y 107 (516)
T KOG0511|consen 38 GELCEACRAGDVDRVRYLVETGVNV---NAVDRFDSSPLYLASLCGHEDVVKLLLENGAI-CSRDTFDGDRCHY 107 (516)
T ss_pred HHHHHHhhcccHHHHHHHHHhCCCc---chhhcccccHHHHHHHcCcHHHHHHHHHcCCc-ccccccCcchhhh
Confidence 3588999999999999999999999 99999999999999999999999999999995 4444445654433
|
|
| >KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown] | Back alignment and domain information |
|---|
Probab=97.83 E-value=1.7e-05 Score=76.60 Aligned_cols=115 Identities=12% Similarity=-0.048 Sum_probs=92.6
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhc-CcccccccCCCCCcHHHHHHhcCCHHHHHHHHh-cCCCccccccccCCCCcHHH
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASK-DRELISVRNNDSETPLFLAALHGNMDAFLCLRS-FNQAKDNRQCRKNNGETILH 133 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~~~g~t~Lh 133 (331)
..|+|.+|+++..++...+..+++. +.. ....|.+|.--+|+ |..++.+...+|+. .|..+ +.+|..|+||||
T Consensus 572 ~r~~lllhL~a~~lyawLie~~~e~~~~~-~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai---~i~D~~G~tpL~ 646 (975)
T KOG0520|consen 572 FRDMLLLHLLAELLYAWLIEKVIEWAGSG-DLELDRDGQGVIHF-CAALGYEWAFLPISADGVAI---DIRDRNGWTPLH 646 (975)
T ss_pred CcchHHHHHHHHHhHHHHHHHHhcccccC-chhhcccCCChhhH-hhhcCCceeEEEEeeccccc---ccccCCCCcccc
Confidence 6789999999999999999999986 443 55667777777787 55666776666665 45555 999999999999
Q ss_pred HHHhcCCHHHHHHHHHhCCc-----ccccccCCCccHhHHHhcCCCc
Q 043901 134 SAISGEYFSIAFQIMRAYPD-----LVNSVNENGLTRLHILASKPTA 175 (331)
Q Consensus 134 ~A~~~~~~~~~~~Ll~~~~~-----~~~~~~~~g~t~l~~A~~~~~~ 175 (331)
+|...|+..++..|++.|+. ++...+..|.|+-..|..+|+.
T Consensus 647 wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~ 693 (975)
T KOG0520|consen 647 WAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHK 693 (975)
T ss_pred hHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhccccc
Confidence 99999999999999988876 2333446799999999999984
|
|
| >KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=7.9e-05 Score=58.08 Aligned_cols=65 Identities=17% Similarity=0.109 Sum_probs=45.1
Q ss_pred ccccCCCCCcHHHHHHhcCCHHHHHHHHhcC-CCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCC
Q 043901 85 ISVRNNDSETPLFLAALHGNMDAFLCLRSFN-QAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYP 152 (331)
Q Consensus 85 ~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g-~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~ 152 (331)
+|.+|..|+||++.|+..|..+.+.||+..| +.+ ...|..|.+++.+|-+.|..++++.|.+...
T Consensus 5 in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~v---gv~d~ssldaaqlaek~g~~~fvh~lfe~~~ 70 (223)
T KOG2384|consen 5 INARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFV---GVTDESSLDAAQLAEKGGAQAFVHSLFENDR 70 (223)
T ss_pred ccchhhhcchHHHHHhhhcchhHHHHHhccCcccc---cccccccchHHHHHHhcChHHHHHHHHHHhc
Confidence 6667777777777777777777777777777 444 6667777777777777777777777766543
|
|
| >KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown] | Back alignment and domain information |
|---|
Probab=97.68 E-value=4.6e-05 Score=73.65 Aligned_cols=100 Identities=18% Similarity=0.070 Sum_probs=79.5
Q ss_pred ccccCCCCCcHHHHHHhcCCHHHHHHHHhc-CCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCc
Q 043901 85 ISVRNNDSETPLFLAALHGNMDAFLCLRSF-NQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGL 163 (331)
Q Consensus 85 ~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~ 163 (331)
.......|.|.+|+++..+..-.++.+++- |... ...|.+|...+|. |..++++.+-+++.-....++++|..|+
T Consensus 567 ~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~---~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~ 642 (975)
T KOG0520|consen 567 SSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGD---LELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGW 642 (975)
T ss_pred cccCCCcchHHHHHHHHHhHHHHHHHHhcccccCc---hhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCC
Confidence 344566799999999999999999999986 6555 5567777788888 5567778887777665556999999999
Q ss_pred cHhHHHhcCCCcccccccchhHHHHHhhhccc
Q 043901 164 TRLHILASKPTAFKRGSRLGLFDRIIHYYKTK 195 (331)
Q Consensus 164 t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~ 195 (331)
||||+|+.+|+ ..++..++..+...
T Consensus 643 tpL~wAa~~G~-------e~l~a~l~~lga~~ 667 (975)
T KOG0520|consen 643 TPLHWAAFRGR-------EKLVASLIELGADP 667 (975)
T ss_pred cccchHhhcCH-------HHHHHHHHHhcccc
Confidence 99999999998 57777777655443
|
|
| >KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00012 Score=57.03 Aligned_cols=68 Identities=13% Similarity=0.043 Sum_probs=61.5
Q ss_pred cceec-cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCc
Q 043901 51 ILYIR-LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAK 118 (331)
Q Consensus 51 ~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~ 118 (331)
.++.+ ..|.||+++|+..|..+.+.||+.+|+..+.+.|..|.+..-+|-..|..+++..|-+.-.+.
T Consensus 4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~et 72 (223)
T KOG2384|consen 4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRET 72 (223)
T ss_pred CccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccC
Confidence 35667 899999999999999999999999996669999999999999999999999999999875543
|
|
| >smart00248 ANK ankyrin repeats | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00078 Score=35.28 Aligned_cols=29 Identities=31% Similarity=0.384 Sum_probs=25.1
Q ss_pred CCchHHHHHHhcChHHHHHHHHhhCCcccc
Q 043901 278 RNETAILIAAKMGVAEMVKKILDTFPVAMQ 307 (331)
Q Consensus 278 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~ 307 (331)
.|.||+|+|+..|+.++++.|++ .+.+++
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~ll~-~~~~~~ 29 (30)
T smart00248 1 DGRTPLHLAAENGNLEVVKLLLD-KGADIN 29 (30)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHH-cCCCCC
Confidence 37999999999999999999999 566653
|
Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. |
| >KOG2505 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.00042 Score=61.82 Aligned_cols=44 Identities=20% Similarity=0.111 Sum_probs=40.5
Q ss_pred CCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHH
Q 043901 277 GRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAV 321 (331)
Q Consensus 277 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~ 321 (331)
.-.-|+||+|+..|..++|.+||+ .|+|+.++|..|+||..++.
T Consensus 428 ~ltsT~LH~aa~qg~~k~v~~~Le-eg~Dp~~kd~~Grtpy~ls~ 471 (591)
T KOG2505|consen 428 YLTSTFLHYAAAQGARKCVKYFLE-EGCDPSTKDGAGRTPYSLSA 471 (591)
T ss_pred cccchHHHHHHhcchHHHHHHHHH-hcCCchhcccCCCCcccccc
Confidence 346899999999999999999999 68999999999999999876
|
|
| >smart00248 ANK ankyrin repeats | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.002 Score=33.63 Aligned_cols=26 Identities=35% Similarity=0.429 Sum_probs=14.2
Q ss_pred CCcHHHHHHhcCCHHHHHHHHhcCCC
Q 043901 92 SETPLFLAALHGNMDAFLCLRSFNQA 117 (331)
Q Consensus 92 g~tpLh~A~~~~~~~~~~~Ll~~g~~ 117 (331)
|.||+|+|+..++.++++.|++.+.+
T Consensus 2 ~~~~l~~~~~~~~~~~~~~ll~~~~~ 27 (30)
T smart00248 2 GRTPLHLAAENGNLEVVKLLLDKGAD 27 (30)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 44555555555555555555555543
|
Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. |
| >KOG2505 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0029 Score=56.67 Aligned_cols=62 Identities=11% Similarity=-0.009 Sum_probs=44.8
Q ss_pred HHHHHHHHhcCccccc------ccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHH
Q 043901 71 EAMCHCTASKDRELIS------VRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAI 136 (331)
Q Consensus 71 ~~~v~~Ll~~~~~~~~------~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~ 136 (331)
...+.+|.+++.. .| ..+..-.|+||+|+.+|...++.+|++.|+|+ ..+|..|.||..++.
T Consensus 404 p~~ie~lken~ls-gnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp---~~kd~~Grtpy~ls~ 471 (591)
T KOG2505|consen 404 PDSIEALKENLLS-GNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDP---STKDGAGRTPYSLSA 471 (591)
T ss_pred hhHHHHHHhcCCc-ccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCc---hhcccCCCCcccccc
Confidence 4456666665544 22 23444567888888888888888888888888 788888888887766
|
|
| >PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.038 Score=44.78 Aligned_cols=94 Identities=9% Similarity=-0.002 Sum_probs=66.4
Q ss_pred CCchhhhhhccCCHHHHHHHHhcCcccccccCCC----CCcHHHHHHhc--CCHHHHHHHHhcC-CCccccccccCCCCc
Q 043901 58 GNHGRKYIKPLGNEAMCHCTASKDRELISVRNND----SETPLFLAALH--GNMDAFLCLRSFN-QAKDNRQCRKNNGET 130 (331)
Q Consensus 58 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~----g~tpLh~A~~~--~~~~~~~~Ll~~g-~~~~~~~~~~~~g~t 130 (331)
-.+++-+|...+..+++.+|+++-. ....|.- +.--+.++... .+..++++.++.| +++..-..+-+.|.|
T Consensus 179 A~~Am~~si~~~K~dva~~lls~f~--ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdt 256 (284)
T PF06128_consen 179 AHQAMWLSIGNAKEDVALYLLSKFN--FTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDT 256 (284)
T ss_pred HHHHHHHHhcccHHHHHHHHHhhcc--eecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcch
Confidence 3578889998899999999998642 2222221 22234444432 3466889999988 444222335678999
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCc
Q 043901 131 ILHSAISGEYFSIAFQIMRAYPD 153 (331)
Q Consensus 131 ~Lh~A~~~~~~~~~~~Ll~~~~~ 153 (331)
.|.-|++.++.+++.+|+++|+.
T Consensus 257 MLDNA~Ky~~~emi~~Llk~GA~ 279 (284)
T PF06128_consen 257 MLDNAMKYKNSEMIAFLLKYGAI 279 (284)
T ss_pred HHHhHHhcCcHHHHHHHHHcCcc
Confidence 99999999999999999999984
|
The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol []. |
| >PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.32 Score=38.30 Aligned_cols=69 Identities=12% Similarity=0.051 Sum_probs=47.1
Q ss_pred cHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCC
Q 043901 94 TPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKP 173 (331)
Q Consensus 94 tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~ 173 (331)
..+..|+.++..+++++.-+...+- -...++.+..||+..++|+++|+-.. ... .+-.+-+..|....
T Consensus 48 CLl~HAVk~nmL~ILqkyke~L~~~------~~~~q~LFElAC~~qkydiV~WI~qn----L~i--~~~~~iFdIA~~~k 115 (192)
T PF03158_consen 48 CLLYHAVKYNMLSILQKYKEDLENE------RYLNQELFELACEEQKYDIVKWIGQN----LHI--YNPEDIFDIAFAKK 115 (192)
T ss_pred HHHHHHHHcCcHHHHHHHHHHhhcc------hhHHHHHHHHHHHHccccHHHHHhhc----cCC--CCchhhhhhhhhcc
Confidence 4577899999999988887753311 12456778899999999999999433 222 23345666777766
Q ss_pred C
Q 043901 174 T 174 (331)
Q Consensus 174 ~ 174 (331)
.
T Consensus 116 D 116 (192)
T PF03158_consen 116 D 116 (192)
T ss_pred c
Confidence 5
|
These proteins may be involved in promoting survival of infected macrophages []. |
| >PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.62 Score=38.01 Aligned_cols=111 Identities=10% Similarity=0.056 Sum_probs=73.3
Q ss_pred HHHHHhcCCHHHHHHHHHcCCcc---ccccccCCccHHHH-HHhhhC---CCcceeccCCCchhhhhhc--cCCHHHHHH
Q 043901 6 LSKFAVRGQWDNIVQAYENNPMS---REAKLTNLETQLYT-LQQQLG---KPILYIRLGGNHGRKYIKP--LGNEAMCHC 76 (331)
Q Consensus 6 L~~a~~~g~~~~~~~ll~~~~~~---~~~~~~~~~t~~v~-Ll~~~~---~~~~~~~~~g~t~Lh~A~~--~g~~~~v~~ 76 (331)
|-.||...+++++-.++...... ....+..+...+.- |++... .+.... ..+-.-+-|+.+ ..+..++++
T Consensus 157 ledAV~AsN~~~i~~~VtdKkdA~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~-~~~~ydieY~LS~h~a~~kvL~~ 235 (284)
T PF06128_consen 157 LEDAVKASNYEEISNLVTDKKDAHQAMWLSIGNAKEDVALYLLSKFNFTKQDVASM-EKELYDIEYLLSEHSASYKVLEY 235 (284)
T ss_pred HHHHHhhcCHHHHHHHhcchHHHHHHHHHHhcccHHHHHHHHHhhcceecchhhhc-CcchhhHHHHHhhcCCcHHHHHH
Confidence 66788888888888877655432 22223333333555 666542 111111 222234555553 345789999
Q ss_pred HHhcCcccccc---cCCCCCcHHHHHHhcCCHHHHHHHHhcCCC
Q 043901 77 TASKDRELISV---RNNDSETPLFLAALHGNMDAFLCLRSFNQA 117 (331)
Q Consensus 77 Ll~~~~~~~~~---~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~ 117 (331)
++++|-..+|. +-..|.|-|--|+.++..+|+..|+++|+-
T Consensus 236 Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~ 279 (284)
T PF06128_consen 236 FINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI 279 (284)
T ss_pred HHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence 99999766665 355799999999999999999999999983
|
The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol []. |
| >PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain | Back alignment and domain information |
|---|
Probab=90.99 E-value=0.29 Score=32.88 Aligned_cols=46 Identities=17% Similarity=0.010 Sum_probs=28.4
Q ss_pred hhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhc
Q 043901 61 GRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSF 114 (331)
Q Consensus 61 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~ 114 (331)
.+.+|+..|+.|+++.+++.+.. + ...+..|+...+.+++++|++.
T Consensus 9 tl~~Ai~GGN~eII~~c~~~~~~--~------~~~l~~AI~~H~n~i~~~l~~~ 54 (76)
T PF11929_consen 9 TLEYAIIGGNFEIINICLKKNKP--D------NDCLEYAIKSHNNEIADWLIEN 54 (76)
T ss_pred HHHHHHhCCCHHHHHHHHHHhcc--H------HHHHHHHHHHhhHHHHHHHHHh
Confidence 45666677777777766654422 1 2346667777777777777664
|
These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ]. |
| >PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses | Back alignment and domain information |
|---|
Probab=89.43 E-value=2.5 Score=33.47 Aligned_cols=109 Identities=8% Similarity=0.010 Sum_probs=68.9
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHH----HHHhcCCCccccccccCCC---
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFL----CLRSFNQAKDNRQCRKNNG--- 128 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~----~Ll~~g~~~~~~~~~~~~g--- 128 (331)
....+.+-.||+..+.|+|+|+-++-.. - +-.+-+-.|....+.++.. .+.+...+ ..+.+-
T Consensus 74 ~~~q~LFElAC~~qkydiV~WI~qnL~i----~--~~~~iFdIA~~~kDlsLyslGY~l~~~~~~~-----~~~~d~~~l 142 (192)
T PF03158_consen 74 YLNQELFELACEEQKYDIVKWIGQNLHI----Y--NPEDIFDIAFAKKDLSLYSLGYKLLFNRMMS-----EHNEDPTSL 142 (192)
T ss_pred hHHHHHHHHHHHHccccHHHHHhhccCC----C--CchhhhhhhhhccchhHHHHHHHHHHhhccc-----ccccCHHHH
Confidence 3456778889999999999999543322 1 2234566788887776421 12222111 000000
Q ss_pred -CcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHH
Q 043901 129 -ETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRII 189 (331)
Q Consensus 129 -~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li 189 (331)
..-|..|+..|.+..+.-.+++|++ ++ .+.|..|+..++ ..++..++
T Consensus 143 l~~hl~~a~~kgll~F~letlkygg~-~~------~~vls~Av~ynh-------RkIL~yfi 190 (192)
T PF03158_consen 143 LTQHLEKAAAKGLLPFVLETLKYGGN-VD------IIVLSQAVKYNH-------RKILDYFI 190 (192)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHcCCc-cc------HHHHHHHHHhhH-------HHHHHHhh
Confidence 1236789999999999888899887 32 278999999888 56666654
|
These proteins may be involved in promoting survival of infected macrophages []. |
| >PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain | Back alignment and domain information |
|---|
Probab=88.42 E-value=1 Score=30.27 Aligned_cols=48 Identities=23% Similarity=0.200 Sum_probs=40.6
Q ss_pred cHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhC
Q 043901 94 TPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAY 151 (331)
Q Consensus 94 tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~ 151 (331)
.-+..|+..|+.|+++.+++.+ .+ + ...+..|+..-+.+++++|++..
T Consensus 8 ~tl~~Ai~GGN~eII~~c~~~~-~~---~------~~~l~~AI~~H~n~i~~~l~~~y 55 (76)
T PF11929_consen 8 KTLEYAIIGGNFEIINICLKKN-KP---D------NDCLEYAIKSHNNEIADWLIENY 55 (76)
T ss_pred HHHHHHHhCCCHHHHHHHHHHh-cc---H------HHHHHHHHHHhhHHHHHHHHHhc
Confidence 4688999999999999999765 22 1 46799999999999999999874
|
These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ]. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 2e-05
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 11/102 (10%)
Query: 75 HCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSF----NQAKDNRQCRKNNGET 130
CT ++ N + T L LA++HG + L S N A++ NG T
Sbjct: 100 SCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN-AQEPC-----NGRT 153
Query: 131 ILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASK 172
LH A+ + + +++ D VN V G + + +
Sbjct: 154 ALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGR 194
|
| >1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 6e-05
Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 14/92 (15%)
Query: 85 ISVRNNDSETPLFLAALHGNMDAFLCLRSFN---QAKDNRQCRKNNGETILHSAISGEYF 141
++ +NN +TPL LA + + L + +D G T LH A
Sbjct: 38 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRD------FRGNTPLHLACEQGCL 91
Query: 142 SIA-----FQIMRAYPDLVNSVNENGLTRLHI 168
+ ++ + N NG T LH+
Sbjct: 92 ASVGVLTQSCTTPHLHSILKATNYNGHTCLHL 123
|
| >1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236 | Back alignment and structure |
|---|
Score = 39.8 bits (94), Expect = 5e-04
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 89 NNDSETPLFLAALHGNMDAFLCLRSF---NQAKDNRQCRKNNGETILHSAISGEYFSIAF 145
D ++ L LA +H + + + A N Q N +T LH A+ IA
Sbjct: 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQ--NNLQQTPLHLAVITNQPEIAE 62
Query: 146 QIMRAYPDLVNSVNENGLTRLHI 168
++ A D + G T LH+
Sbjct: 63 ALLGAGCD-PELRDFRGNTPLHL 84
|
| >2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228 | Back alignment and structure |
|---|
Score = 43.2 bits (103), Expect = 4e-05
Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 23/114 (20%)
Query: 75 HCTASKDRE-----LIS------VRNNDSETPLFLAALHGNMDA--FLCLRSFNQ--AKD 119
H K LI +++ ++ PL AA G++ LC + +D
Sbjct: 112 HLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQD 171
Query: 120 NRQCRKNNGETILHSAISGEYFSIA-FQIMRAYPDLVNSVNENGLTRLHILASK 172
G T L A++ + A + + + + V+ G + ++
Sbjct: 172 ------KQGWTPLFHALAEGHGDAAVLLVEKYGAE-YDLVDNKGAKAEDVALNE 218
|
| >2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228 | Back alignment and structure |
|---|
Score = 40.5 bits (96), Expect = 3e-04
Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 3/90 (3%)
Query: 85 ISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRK-NNGETILHSAISGEYFSI 143
+ ++ D PL + + L S N ++G T H A S +
Sbjct: 29 LLQKDQDGRIPLHWSVSFQAHEITSFLLS-KMENVNLDDYPDDSGWTPFHIACSVGNLEV 87
Query: 144 A-FQIMRAYPDLVNSVNENGLTRLHILASK 172
R +N + G+T LH+ K
Sbjct: 88 VKSLYDRPLKPDLNKITNQGVTCLHLAVGK 117
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 5e-05
Identities = 40/304 (13%), Positives = 80/304 (26%), Gaps = 93/304 (30%)
Query: 12 RGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQL----------GK------------ 49
R + N Q + +SR L L L+ GK
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 50 -------PILYIRLGG-NHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAAL 101
I ++ L N ++ L + + D S ++ S L + ++
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQK--LLY---QIDPNWTSRSDHSSNIKLRIHSI 230
Query: 102 HGNMDAFLCLRSFNQA-------KDNR-------QCRKNNGETILHSAISGEYFSIAFQI 147
+ L + + ++ + C+ IL ++ + + +
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK------IL---LTTRFKQVTDFL 281
Query: 148 MRAYPDLVNSVNEN-GLTR---LHILASK--------PTAFKRGS--RLGLF-----DRI 188
A ++ + + LT +L P + RL + D +
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 189 IH--YYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPI--- 243
+K + I S N P Y F + + I
Sbjct: 342 ATWDNWK------HVNCDKLTTIIESSLN-----VLEPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 244 VLGL 247
+L L
Sbjct: 391 LLSL 394
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 2e-04
Identities = 58/429 (13%), Positives = 118/429 (27%), Gaps = 128/429 (29%)
Query: 6 LSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIRLGGNHGRKYI 65
K + W N+ N+P + L L Q+ I+L + + +
Sbjct: 177 QCKMDFKIFWLNL--KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 66 ------KPLGN--------------EAM-CHCT---ASKDRELISVRNNDSETP------ 95
KP N A C ++ +++ + + T
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 96 -----------LFLAALHGNMDAF-----------LCLRSFNQAKDNRQCRKNNGETI-- 131
L L L + L ++ + +N + +
Sbjct: 295 SMTLTPDEVKSLLLKYL--DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352
Query: 132 --LHSAISGEYFSIAFQIMRA-YPDLV---NSVN--ENGLTRL-------------HILA 170
L + I + R + L S + L+ + + L
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412
Query: 171 SKPTAFKRGSRLGLFDRIIH--YYKTKGEANDEESPECNRSI--SFSKNDDKCGQFFPP- 225
K+ + I Y + K + +E +RSI ++ P
Sbjct: 413 KYSLVEKQPKESTIS---IPSIYLELKVKLENE--YALHRSIVDHYNIPKTFDSDDLIPP 467
Query: 226 ---NYAACFLFFWLLMKALPIVLGLGLKNF----KISIIPYIKKVQGLKFMEKKDQQSGR 278
Y F+ + G LKN ++++ +F+E+K +
Sbjct: 468 YLDQY-----FYSHI--------GHHLKNIEHPERMTLFR--MVFLDFRFLEQKIRHDST 512
Query: 279 NETAIL---------------IAAKMGVAE-MVKKILDTFPVAMQDM-DSEKKNLVLLAV 321
A I E +V ILD P +++ S+ +L+ +A+
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL 572
Query: 322 ENRQTSIYK 330
+I++
Sbjct: 573 MAEDEAIFE 581
|
| >1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241 | Back alignment and structure |
|---|
Score = 42.8 bits (102), Expect = 5e-05
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 12/90 (13%)
Query: 85 ISVRNNDSETPLFLAALHGNMDA--FLCLRSFN-QAKDNRQCRKNNGETILHSAISGEYF 141
+ + NN +TPL LA + L + A D +G+T H A
Sbjct: 39 LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALD------RHGQTAAHLACEHRSP 92
Query: 142 SIA-FQIMR-AYPDL-VNSVNENGLTRLHI 168
+ + A L + + N +GLT LH+
Sbjct: 93 TCLRALLDSAAPGTLDLEARNYDGLTALHV 122
|
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 6e-05
Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 5/86 (5%)
Query: 85 ISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIA 144
++ + +PL AA G+ D L N A N ++G T L A Y S+
Sbjct: 337 VNAKTKLGYSPLHQAAQQGHTDIVTLLLK-NGASPNEVS--SDGTTPLAIAKRLGYISVT 393
Query: 145 --FQIMRAYPDLVNSVNENGLTRLHI 168
+++ V +++ ++
Sbjct: 394 DVLKVVTDETSFVLVSDKHRMSFPET 419
|
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 1e-04
Identities = 24/88 (27%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Query: 85 ISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIA 144
+ TPL +AA +G + L A N NG T LH A+ I
Sbjct: 139 QACMTKKGFTPLHVAAKYGKVRVAELLLE-RDAHPNAAG--KNGLTPLHVAVHHNNLDIV 195
Query: 145 FQIMRAYPDLVNSVNENGLTRLHILASK 172
++ +S NG T LHI A +
Sbjct: 196 KLLLPRGGS-PHSPAWNGYTPLHIAAKQ 222
|
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 1e-04
Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 4/84 (4%)
Query: 85 ISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIA 144
+ TPL +AA ++ L N + G T LH A + +
Sbjct: 205 PHSPAWNGYTPLHIAAKQNQVEVARSLLQ-YGGSANAES--VQGVTPLHLAAQEGHAEMV 261
Query: 145 FQIMRAYPDLVNSVNENGLTRLHI 168
++ + N N++GLT LH+
Sbjct: 262 ALLLSKQAN-GNLGNKSGLTPLHL 284
|
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
Query: 85 ISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIA 144
+ + TPL +A H N+D L + NG T LH A +A
Sbjct: 172 PNAAGKNGLTPLHVAVHHNNLDIVKLLLP-RGGSPHSPA--WNGYTPLHIAAKQNQVEVA 228
Query: 145 FQIMRAYPDLVNSVNENGLTRLHILASK 172
+++ N+ + G+T LH+ A +
Sbjct: 229 RSLLQYGGS-ANAESVQGVTPLHLAAQE 255
|
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437 | Back alignment and structure |
|---|
Score = 40.9 bits (97), Expect = 4e-04
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Query: 85 ISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIA 144
++ TPL +AA G+++ L L +A C G T LH A +A
Sbjct: 106 PNLATTAGHTPLHIAAREGHVETVLALLE-KEASQA--CMTKKGFTPLHVAAKYGKVRVA 162
Query: 145 FQIMRAYPDLVNSVNENGLTRLHILASK 172
++ N+ +NGLT LH+
Sbjct: 163 ELLLERDAH-PNAAGKNGLTPLHVAVHH 189
|
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437 | Back alignment and structure |
|---|
Score = 39.8 bits (94), Expect = 8e-04
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 85 ISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIA 144
+V N ETPL +AA G+ + L N+AK N + + +T LH A + ++
Sbjct: 40 PNVSNVKVETPLHMAARAGHTEVAKYLLQ-NKAKVNAKA--KDDQTPLHCAARIGHTNMV 96
Query: 145 FQIMRAYPDLVNSVNENGLTRLHILASK 172
++ + N G T LHI A++
Sbjct: 97 KLLLENNAN-PNLATTAGHTPLHI-AAR 122
|
| >3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 7e-05
Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 12/88 (13%)
Query: 85 ISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIA 144
+++N T L LA G +D L S + +G+ +H A+ +
Sbjct: 46 PTIQNRFGCTALHLACKFGCVDTAKYLAS-VGEVHS----LWHGQKPIHLAVMANKTDLV 100
Query: 145 FQIMRAYPDLVNSVNENGLTRLHILASK 172
LV E G +L
Sbjct: 101 -VA------LVEGAKERGQMPESLLNEC 121
|
| >3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 2e-04
Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 4/90 (4%)
Query: 85 ISVRNNDSETPLFLAALHGNMDA--FLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFS 142
+ ++ ETPL A N +A + +++ G + LH AI +
Sbjct: 166 PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWED 225
Query: 143 IAFQIMRAYPDLVNSVNENGLTRLHILASK 172
+A + + D VN + L++ + +
Sbjct: 226 VAMRFVEMGID-VNMEDNEHTVPLYL-SVR 253
|
| >3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 6e-04
Identities = 17/119 (14%), Positives = 34/119 (28%), Gaps = 22/119 (18%)
Query: 75 HCTASKDRE-----LIS------VRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQC 123
H + E + + +N+ PL+L+ + L + C
Sbjct: 216 HWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQAC 275
Query: 124 RKNNGETI----------LHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASK 172
+NG T+ + +A + Q+++ D V G K
Sbjct: 276 PYHNGTTVLPDRVVWLDFVPAAADPSKQEVL-QLLQEKLDEVVRSLNTGAGGAVKRKKK 333
|
| >3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 6e-04
Identities = 11/105 (10%), Positives = 27/105 (25%), Gaps = 25/105 (23%)
Query: 75 HCTASKDRE-----LISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGE 129
H ++ L+ + P L + + + G+
Sbjct: 89 HLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREV---------NEIGSHVKHCKGQ 139
Query: 130 TILHSAISGEYFSIAFQIMR------AYPDLVNSVNENGLTRLHI 168
T LH + ++++ A + ++ T L
Sbjct: 140 TALHWCV--GLGPEYLEMIKILVQLGAS---PTAKDKADETPLMR 179
|
| >3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 8e-05
Identities = 13/99 (13%), Positives = 21/99 (21%), Gaps = 21/99 (21%)
Query: 85 ISVRNNDSETPLFLAALHGNMDAFLCLRSFNQ---------AKDNRQCRKNNGETILHSA 135
I R + T F G D A + ++
Sbjct: 68 IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALY------KPYKIVVFKN 121
Query: 136 ISGEYFSIAFQIMRAYPDL------VNSVNENGLTRLHI 168
I + I + ++ GLT L
Sbjct: 122 IFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEF 160
|
| >3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 3e-04
Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 14/91 (15%)
Query: 89 NNDSE-TPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQI 147
N SE + AA+ G + FL L F + +++ IL+ + ++I
Sbjct: 2 NAMSEYRTVSAAAMLGTYEDFLEL--FEKGYEDK--ESVLKSNILYDVLRNNNDEARYKI 57
Query: 148 MRAYPDL------VNSVNENGLTRLHILASK 172
L + S + G T L
Sbjct: 58 SMF---LINKGADIKSRTKEGTTLFFPLFQG 85
|
| >1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 8e-05
Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 17/95 (17%)
Query: 85 ISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIA 144
+ N D TPL +A +H + + LR A N+ G T LH A+ + S+
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRD-AGADLNKP-EPTCGRTPLHLAVEAQAASVL 208
Query: 145 FQIMRAYPDL-------VNSVNENGLTRLHILASK 172
+L + G T L +
Sbjct: 209 --------ELLLKAGADPTARMYGGRTPLGSALLR 235
|
| >2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 1e-04
Identities = 22/99 (22%), Positives = 30/99 (30%), Gaps = 16/99 (16%)
Query: 89 NNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEY-------F 141
E PL LAA D L + + + G T+LH+ +
Sbjct: 133 FYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSAL 192
Query: 142 SIA--------FQIMRAYPDLVNSVNENGLTRLHILASK 172
I + L N GLT L LA+K
Sbjct: 193 VIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLK-LAAK 230
|
| >2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 10/94 (10%)
Query: 85 ISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAI---SGEYF 141
++ N + L AA + + + + + + K + + NG T L +
Sbjct: 192 PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQV 251
Query: 142 SIAF-------QIMRAYPDLVNSVNENGLTRLHI 168
+ A ++ +S G T LH
Sbjct: 252 ASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHY 285
|
| >2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 8e-04
Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
Query: 85 ISVRNNDSETPLFLAALHGNMDA--FLCLRSFN-QAKDNRQCRKNNGETILHSAISGEYF 141
++ + D TPL LA L +L + + + + LH A + F
Sbjct: 159 VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYN------KSERSALHQAAANRDF 212
Query: 142 SIAFQIMRAYPDL--VNSVNENGLTRLHI 168
+ ++ + + ++ NG+T L I
Sbjct: 213 GMMVYMLNSTKLKGDIEELDRNGMTALMI 241
|
| >1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 4e-04
Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 1/99 (1%)
Query: 70 NEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGE 129
+A ++ ++ + ET L LA + + + Q N + G
Sbjct: 147 LQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGS 206
Query: 130 TILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHI 168
T LH + +++ + NE+G T L I
Sbjct: 207 TALHYCCLTDNAECL-KLLLRGKASIEIANESGETPLDI 244
|
| >2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223 | Back alignment and structure |
|---|
Score = 39.3 bits (93), Expect = 7e-04
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 11/85 (12%)
Query: 88 RNNDSETPLFLAALHGNMDA--FLCLRSFN-QAKDNRQCRKNNGETILHSAISGEYFSIA 144
+ ET L LAA + DA L S + +D N G T LH+A+S + +
Sbjct: 21 TDRTGETALHLAARYSRSDAAKRLLEASADANIQD------NMGRTPLHAAVSADAQGVF 74
Query: 145 -FQIMRAYPDLVNSVNENGLTRLHI 168
I D +++ +G T L +
Sbjct: 75 QILIRNRATD-LDARMHDGTTPLIL 98
|
| >1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299 | Back alignment and structure |
|---|
Score = 39.8 bits (94), Expect = 8e-04
Identities = 22/91 (24%), Positives = 31/91 (34%), Gaps = 9/91 (9%)
Query: 84 LISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSI 143
++ + D E DA L S D R +G T LH A + Y +
Sbjct: 158 EVNRQGVDIEAARKEEERIMLRDARQWLNS-GHINDVRH--AKSGGTALHVAAAKGYTEV 214
Query: 144 A-FQIMR-AYPDLVNSVNENGLTRLHILASK 172
I VN + +G T LH A+
Sbjct: 215 LKLLIQARYD---VNIKDYDGWTPLHA-AAH 241
|
| >3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179 | Back alignment and structure |
|---|
Score = 38.6 bits (91), Expect = 8e-04
Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 9/87 (10%)
Query: 89 NNDSETPLFLAALHGNMDAFLCLRSFNQAKD-NRQCRKNNGETILHSAISGEYFSIA-FQ 146
+ + +F GN A N D N ++G + LH A ++
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLD-NTENDLN--QGDDHGFSPLHWACREGRSAVVEML 58
Query: 147 IMR-AYPDLVNSVNENGLTRLHILASK 172
IMR A +N +N T LH+ AS
Sbjct: 59 IMRGAR---INVMNRGDDTPLHLAASH 82
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 331 | |||
| 1n11_A | 437 | Ankyrin; clathrin, BAND 3, anion exchanger, struct | 100.0 | |
| 1n11_A | 437 | Ankyrin; clathrin, BAND 3, anion exchanger, struct | 100.0 | |
| 1wdy_A | 285 | 2-5A-dependent ribonuclease; hydrolase, RNA-bindin | 100.0 | |
| 4b93_B | 269 | Ankyrin repeat domain-containing protein 27; endoc | 100.0 | |
| 3aji_A | 231 | 26S proteasome non-ATPase regulatory subunit 10; g | 100.0 | |
| 1yyh_A | 253 | HN1;, notch 1, ankyrin domain; ankyrin repeats, ce | 100.0 | |
| 2dzn_A | 228 | Probable 26S proteasome regulatory subunit P28; an | 100.0 | |
| 1k1a_A | 241 | B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa | 100.0 | |
| 3d9h_A | 285 | CDNA FLJ77766, highly similar to HOMO sapiens anky | 100.0 | |
| 2xai_A | 261 | ASB-9, ankyrin repeat and SOCS box protein 9; tran | 100.0 | |
| 3b7b_A | 237 | Euchromatic histone-lysine N-methyltransferase 1; | 100.0 | |
| 1oy3_D | 282 | Transcription factor inhibitor I-kappa-B-beta; pro | 100.0 | |
| 3utm_A | 351 | Tankyrase-1; tankyrase, TNKS, ankryin repeat clust | 100.0 | |
| 2f8y_A | 223 | Notch homolog 1, translocation-associated (drosoph | 100.0 | |
| 2fo1_E | 373 | LIN-12 protein; beta-barrel, protein-DNA complex, | 100.0 | |
| 3ljn_A | 364 | Hypothetical protein; ankyrin, structural genomics | 100.0 | |
| 4g8k_A | 337 | 2-5A-dependent ribonuclease; ankyrin-repeat domain | 100.0 | |
| 3eu9_A | 240 | Huntingtin-interacting protein 14; epigenetics, an | 100.0 | |
| 1oy3_D | 282 | Transcription factor inhibitor I-kappa-B-beta; pro | 100.0 | |
| 3kea_A | 285 | K1L; tropism, ANK repeat, viral protein; 2.30A {Va | 100.0 | |
| 1yyh_A | 253 | HN1;, notch 1, ankyrin domain; ankyrin repeats, ce | 100.0 | |
| 3hra_A | 201 | Ankyrin repeat family protein; structural protein; | 100.0 | |
| 3b7b_A | 237 | Euchromatic histone-lysine N-methyltransferase 1; | 100.0 | |
| 1s70_B | 299 | 130 kDa myosin-binding subunit of smooth muscle my | 100.0 | |
| 1k1a_A | 241 | B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa | 100.0 | |
| 2rfa_A | 232 | Transient receptor potential cation channel subfa | 100.0 | |
| 2xai_A | 261 | ASB-9, ankyrin repeat and SOCS box protein 9; tran | 100.0 | |
| 1s70_B | 299 | 130 kDa myosin-binding subunit of smooth muscle my | 100.0 | |
| 2dzn_A | 228 | Probable 26S proteasome regulatory subunit P28; an | 100.0 | |
| 3utm_A | 351 | Tankyrase-1; tankyrase, TNKS, ankryin repeat clust | 100.0 | |
| 1wdy_A | 285 | 2-5A-dependent ribonuclease; hydrolase, RNA-bindin | 100.0 | |
| 4g8k_A | 337 | 2-5A-dependent ribonuclease; ankyrin-repeat domain | 100.0 | |
| 3d9h_A | 285 | CDNA FLJ77766, highly similar to HOMO sapiens anky | 100.0 | |
| 3aji_A | 231 | 26S proteasome non-ATPase regulatory subunit 10; g | 100.0 | |
| 1ikn_D | 236 | Protein (I-kappa-B-alpha), protein (NF-kappa-B P50 | 100.0 | |
| 2fo1_E | 373 | LIN-12 protein; beta-barrel, protein-DNA complex, | 100.0 | |
| 2etb_A | 256 | Transient receptor potential cation channel subfam | 100.0 | |
| 4gpm_A | 169 | Engineered protein OR264; de novo protein, structu | 100.0 | |
| 3kea_A | 285 | K1L; tropism, ANK repeat, viral protein; 2.30A {Va | 100.0 | |
| 2rfa_A | 232 | Transient receptor potential cation channel subfa | 100.0 | |
| 1ikn_D | 236 | Protein (I-kappa-B-alpha), protein (NF-kappa-B P50 | 100.0 | |
| 4b93_B | 269 | Ankyrin repeat domain-containing protein 27; endoc | 100.0 | |
| 3hra_A | 201 | Ankyrin repeat family protein; structural protein; | 100.0 | |
| 3ljn_A | 364 | Hypothetical protein; ankyrin, structural genomics | 100.0 | |
| 2f8y_A | 223 | Notch homolog 1, translocation-associated (drosoph | 100.0 | |
| 2etb_A | 256 | Transient receptor potential cation channel subfam | 100.0 | |
| 1sw6_A | 327 | Regulatory protein SWI6; transcription regulation, | 100.0 | |
| 4gpm_A | 169 | Engineered protein OR264; de novo protein, structu | 100.0 | |
| 2pnn_A | 273 | Transient receptor potential cation channel subfa | 100.0 | |
| 2pnn_A | 273 | Transient receptor potential cation channel subfa | 100.0 | |
| 3jxi_A | 260 | Vanilloid receptor-related osmotically activated p | 100.0 | |
| 3v30_A | 172 | DNA-binding protein rfxank; structural genomics co | 100.0 | |
| 3jxi_A | 260 | Vanilloid receptor-related osmotically activated p | 99.98 | |
| 4hbd_A | 276 | KN motif and ankyrin repeat domain-containing Pro; | 99.98 | |
| 2vge_A | 229 | RELA-associated inhibitor; iaspp, nucleus, apoptos | 99.97 | |
| 3eu9_A | 240 | Huntingtin-interacting protein 14; epigenetics, an | 99.97 | |
| 1ihb_A | 162 | P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit | 99.97 | |
| 3v31_A | 167 | Ankyrin repeat family A protein 2; structural geno | 99.97 | |
| 2rfm_A | 192 | Putative ankyrin repeat protein TV1425; ANK repeat | 99.97 | |
| 2rfm_A | 192 | Putative ankyrin repeat protein TV1425; ANK repeat | 99.97 | |
| 4hbd_A | 276 | KN motif and ankyrin repeat domain-containing Pro; | 99.97 | |
| 2y1l_E | 169 | Darpin-8.4; hydrolase-inhibitor complex, DEVD darp | 99.97 | |
| 3f6q_A | 179 | Integrin-linked protein kinase; ILK, integrin-link | 99.97 | |
| 3v31_A | 167 | Ankyrin repeat family A protein 2; structural geno | 99.97 | |
| 1awc_B | 153 | Protein (GA binding protein beta 1); complex (tran | 99.96 | |
| 1bd8_A | 156 | P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr | 99.96 | |
| 3v30_A | 172 | DNA-binding protein rfxank; structural genomics co | 99.96 | |
| 1ihb_A | 162 | P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit | 99.96 | |
| 3twr_A | 165 | Tankyrase-2; ankyrin repeat, protein-protein inter | 99.96 | |
| 2y1l_E | 169 | Darpin-8.4; hydrolase-inhibitor complex, DEVD darp | 99.96 | |
| 1awc_B | 153 | Protein (GA binding protein beta 1); complex (tran | 99.96 | |
| 1ycs_B | 239 | 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres | 99.96 | |
| 2aja_A | 376 | Ankyrin repeat family protein; NESG, Q5ZSV0, struc | 99.96 | |
| 3f6q_A | 179 | Integrin-linked protein kinase; ILK, integrin-link | 99.96 | |
| 1sw6_A | 327 | Regulatory protein SWI6; transcription regulation, | 99.96 | |
| 3twr_A | 165 | Tankyrase-2; ankyrin repeat, protein-protein inter | 99.95 | |
| 1bd8_A | 156 | P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr | 99.95 | |
| 2vge_A | 229 | RELA-associated inhibitor; iaspp, nucleus, apoptos | 99.95 | |
| 3t8k_A | 186 | Uncharacterized protein; structural genomics, PSI- | 99.95 | |
| 1ycs_B | 239 | 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres | 99.94 | |
| 1d9s_A | 136 | Cyclin-dependent kinase 4 inhibitor B; helix-turn- | 99.94 | |
| 3t8k_A | 186 | Uncharacterized protein; structural genomics, PSI- | 99.94 | |
| 1bi7_B | 156 | P16INK4A, MTS1, multiple tumor suppressor; cyclin | 99.94 | |
| 2aja_A | 376 | Ankyrin repeat family protein; NESG, Q5ZSV0, struc | 99.93 | |
| 3ui2_A | 244 | Signal recognition particle 43 kDa protein, chlor; | 99.93 | |
| 1d9s_A | 136 | Cyclin-dependent kinase 4 inhibitor B; helix-turn- | 99.93 | |
| 3deo_A | 183 | Signal recognition particle 43 kDa protein; chloro | 99.93 | |
| 2jab_A | 136 | H10-2-G3; HER2, darpin, ankyrin repeat protein, me | 99.93 | |
| 1n0r_A | 126 | 4ANK, 4 ankyrin repeats; structural protein; 1.50A | 99.93 | |
| 1bi7_B | 156 | P16INK4A, MTS1, multiple tumor suppressor; cyclin | 99.92 | |
| 3c5r_A | 137 | BARD-1, BRCA1-associated ring domain protein 1; an | 99.92 | |
| 3aaa_C | 123 | Myotrophin, protein V-1; actin capping protein, ba | 99.92 | |
| 3c5r_A | 137 | BARD-1, BRCA1-associated ring domain protein 1; an | 99.91 | |
| 2b0o_E | 301 | UPLC1; arfgap, structural genomics, structural gen | 99.91 | |
| 1n0r_A | 126 | 4ANK, 4 ankyrin repeats; structural protein; 1.50A | 99.91 | |
| 2jab_A | 136 | H10-2-G3; HER2, darpin, ankyrin repeat protein, me | 99.91 | |
| 3deo_A | 183 | Signal recognition particle 43 kDa protein; chloro | 99.9 | |
| 2b0o_E | 301 | UPLC1; arfgap, structural genomics, structural gen | 99.9 | |
| 3ui2_A | 244 | Signal recognition particle 43 kDa protein, chlor; | 99.9 | |
| 3ehr_A | 222 | Osteoclast-stimulating factor 1; beta barrel, heli | 99.9 | |
| 3aaa_C | 123 | Myotrophin, protein V-1; actin capping protein, ba | 99.89 | |
| 1n0q_A | 93 | 3ANK, 3 ankyrin repeats; structural protein; 1.26A | 99.89 | |
| 1dcq_A | 278 | PYK2-associated protein beta; zinc-binding module, | 99.88 | |
| 3ehr_A | 222 | Osteoclast-stimulating factor 1; beta barrel, heli | 99.88 | |
| 2l6b_A | 115 | NR1C; ankyrin, consensus, repeat protein, ising mo | 99.87 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.86 | |
| 3jue_A | 368 | Arfgap with coiled-coil, ANK repeat and PH domain | 99.85 | |
| 1dcq_A | 278 | PYK2-associated protein beta; zinc-binding module, | 99.85 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.84 | |
| 1n0q_A | 93 | 3ANK, 3 ankyrin repeats; structural protein; 1.26A | 99.84 | |
| 3jue_A | 368 | Arfgap with coiled-coil, ANK repeat and PH domain | 99.83 | |
| 2zgd_A | 110 | 3 repeat synthetic ankyrin; ankyrin repeat, hydrox | 99.79 | |
| 2l6b_A | 115 | NR1C; ankyrin, consensus, repeat protein, ising mo | 99.77 | |
| 2zgd_A | 110 | 3 repeat synthetic ankyrin; ankyrin repeat, hydrox | 99.74 |
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-40 Score=303.11 Aligned_cols=191 Identities=17% Similarity=0.214 Sum_probs=151.1
Q ss_pred chhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccH-----------HHH-HHhhhCCCcceec-cCCCchhhhhhcc
Q 043901 2 EVNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQ-----------LYT-LQQQLGKPILYIR-LGGNHGRKYIKPL 68 (331)
Q Consensus 2 ~~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~-----------~v~-Ll~~~~~~~~~~~-~~g~t~Lh~A~~~ 68 (331)
+.++|+.|+..|+.+.++.|++.+.+.. .....+.|| +++ |++.+ .+ ++.+ ..|.||||+|+..
T Consensus 14 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~-~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g-~~-~~~~~~~g~t~L~~A~~~ 90 (437)
T 1n11_A 14 GLTPLHVASFMGHLPIVKNLLQRGASPN-VSNVKVETPLHMAARAGHTEVAKYLLQNK-AK-VNAKAKDDQTPLHCAARI 90 (437)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCSC-CSSSCCCCHHHHHHHHTCHHHHHHHHHHT-CC-SSCCCTTSCCHHHHHHHH
T ss_pred CCCHHHHHHHCCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHhCC-CC-CCCCCCCCCCHHHHHHHC
Confidence 3578999999999999999998755432 222333565 888 88887 33 5556 8899999999999
Q ss_pred CCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHH
Q 043901 69 GNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIM 148 (331)
Q Consensus 69 g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll 148 (331)
|+.+++++|+++|++ ++..+..|.||||+|+..|+.+++++|++.++++ +..+..|.||||+|+..|+.+++++|+
T Consensus 91 g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll 166 (437)
T 1n11_A 91 GHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETVLALLEKEASQ---ACMTKKGFTPLHVAAKYGKVRVAELLL 166 (437)
T ss_dssp TCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS---CCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHhCCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC---cCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 999999999999887 8888888999999999999999999999888887 777888888888888888888888888
Q ss_pred HhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCc-CCCCCCCccc
Q 043901 149 RAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGE-ANDEESPECN 207 (331)
Q Consensus 149 ~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~~~~~~~~ 207 (331)
++|++ ++..+..|.||||+|+..++ .++++.|+..+.+... ...+.+|++.
T Consensus 167 ~~g~~-~~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 218 (437)
T 1n11_A 167 ERDAH-PNAAGKNGLTPLHVAVHHNN-------LDIVKLLLPRGGSPHSPAWNGYTPLHI 218 (437)
T ss_dssp HTTCC-TTCCCSSCCCHHHHHHHTTC-------HHHHHHHGGGTCCSCCCCTTCCCHHHH
T ss_pred hCCCC-CCCCCCCCCCHHHHHHHcCC-------HHHHHHHHhCCCCCCCcCCCCCCHHHH
Confidence 88887 88888888888888888887 6777777777665543 3344555554
|
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-40 Score=302.19 Aligned_cols=296 Identities=17% Similarity=0.122 Sum_probs=249.4
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccH-----------HHH-HHhhhCCCcceec-cCCCchhhhhhccC
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQ-----------LYT-LQQQLGKPILYIR-LGGNHGRKYIKPLG 69 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~-----------~v~-Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g 69 (331)
..+|+.|+..|+.+.++.|++...... .....+.|| +++ |++.+ .+ .+.. ..|.||||+|+..|
T Consensus 48 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~-~~~~~~~g~t~L~~A~~~g 124 (437)
T 1n11_A 48 ETPLHMAARAGHTEVAKYLLQNKAKVN-AKAKDDQTPLHCAARIGHTNMVKLLLENN-AN-PNLATTAGHTPLHIAAREG 124 (437)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHTCCSS-CCCTTSCCHHHHHHHHTCHHHHHHHHHHT-CC-TTCCCTTCCCHHHHHHHHT
T ss_pred CCHHHHHHHcCCHHHHHHHHhCCCCCC-CCCCCCCCHHHHHHHCCCHHHHHHHHhCC-CC-CCCCCCCCCcHHHHHHHcC
Confidence 468999999999999999998766532 333444666 999 99998 44 4555 89999999999999
Q ss_pred CHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHH
Q 043901 70 NEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMR 149 (331)
Q Consensus 70 ~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~ 149 (331)
+.+++++|++.++. .+..+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.+++++|++
T Consensus 125 ~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 200 (437)
T 1n11_A 125 HVETVLALLEKEAS-QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP---NAAGKNGLTPLHVAVHHNNLDIVKLLLP 200 (437)
T ss_dssp CHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCSSCCCHHHHHHHTTCHHHHHHHGG
T ss_pred CHHHHHHHHhCCCC-CcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 99999999999987 8889999999999999999999999999999998 9999999999999999999999999999
Q ss_pred hCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCc-CCCCCCCcccccccccCCCCccCCCCCcchh
Q 043901 150 AYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGE-ANDEESPECNRSISFSKNDDKCGQFFPPNYA 228 (331)
Q Consensus 150 ~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (331)
.|++ ++..+..|.||||+|+..++ .++++.|+..+.+... +..+.+|++. ++..+
T Consensus 201 ~g~~-~~~~~~~g~t~L~~A~~~~~-------~~~~~~Ll~~g~~~~~~~~~g~t~L~~---A~~~g------------- 256 (437)
T 1n11_A 201 RGGS-PHSPAWNGYTPLHIAAKQNQ-------VEVARSLLQYGGSANAESVQGVTPLHL---AAQEG------------- 256 (437)
T ss_dssp GTCC-SCCCCTTCCCHHHHHHHTTC-------HHHHHHHHHTTCCTTCCCTTCCCHHHH---HHHTT-------------
T ss_pred CCCC-CCCcCCCCCCHHHHHHHcCC-------HHHHHHHHHcCCCCCCCCCCCCCHHHH---HHHCC-------------
Confidence 9998 89999999999999999999 8999999998877654 4456677665 33222
Q ss_pred hHHHHHHHHHHhchhhhccCCcc-chhhhhhhhchhhHHHHHhhh----hccCCCCchHHHHHHhcChHHHHHHHHhhCC
Q 043901 229 ACFLFFWLLMKALPIVLGLGLKN-FKISIIPYIKKVQGLKFMEKK----DQQSGRNETAILIAAKMGVAEMVKKILDTFP 303 (331)
Q Consensus 229 ~~~~~~~~l~~~~l~~~g~~~~~-~~~~~~~~~~~~~~~~~l~~~----~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~ 303 (331)
....+.++++......-..... -+++.++..+..+.+++|.+. +.++..|+||||+|+..|+.++|++|++ .|
T Consensus 257 -~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g 334 (437)
T 1n11_A 257 -HAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ-HQ 334 (437)
T ss_dssp -CHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHH-TT
T ss_pred -CHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHh-cC
Confidence 2355666665332222111111 157778888899999999876 6678899999999999999999999999 69
Q ss_pred ccccccccCCCcHHHHHHHcCccccccC
Q 043901 304 VAMQDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 304 ~~~~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
++++.+|..|+||||+|+.+|+.++|++
T Consensus 335 ad~n~~~~~g~t~L~~A~~~g~~~iv~~ 362 (437)
T 1n11_A 335 ADVNAKTKLGYSPLHQAAQQGHTDIVTL 362 (437)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHCChHHHHHH
Confidence 9999999999999999999999999873
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-39 Score=277.23 Aligned_cols=254 Identities=19% Similarity=0.197 Sum_probs=196.0
Q ss_pred chhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhc
Q 043901 2 EVNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASK 80 (331)
Q Consensus 2 ~~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~ 80 (331)
+..+|+.|++.|+.+.++.+++.++.. .... ..|.||||+|+..|+.+++++|++.
T Consensus 5 g~~~L~~A~~~g~~~~v~~Ll~~g~~~-----------------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 61 (285)
T 1wdy_A 5 DNHLLIKAVQNEDVDLVQQLLEGGANV-----------------------NFQEEEGGWTPLHNAVQMSREDIVELLLRH 61 (285)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCT-----------------------TCCCTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred cchHHHHHHHcCCHHHHHHHHHcCCCc-----------------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Confidence 356899999999999999999886432 2222 6678888888888888888888888
Q ss_pred CcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccc--
Q 043901 81 DRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSV-- 158 (331)
Q Consensus 81 ~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~-- 158 (331)
|++ ++..|..|.||||+|+..|+.+++++|+++|+++ +.++..|.||||+|+..|+.+++++|++.|++ ++..
T Consensus 62 g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~ 136 (285)
T 1wdy_A 62 GAD-PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV---NECDFYGFTAFMEAAVYGKVKALKFLYKRGAN-VNLRRK 136 (285)
T ss_dssp TCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT---TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCC
T ss_pred CCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CccCcccCCHHHHHHHhCCHHHHHHHHHhCCC-cccccc
Confidence 887 8888888888888888888888888888888887 88888888888888888888888888888877 6665
Q ss_pred --------cCCCccHhHHHhcCCCcccccccchhHHHHHhh-hcccCc-CCCCCCCcccccccccCCCCccCCCCCcchh
Q 043901 159 --------NENGLTRLHILASKPTAFKRGSRLGLFDRIIHY-YKTKGE-ANDEESPECNRSISFSKNDDKCGQFFPPNYA 228 (331)
Q Consensus 159 --------~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (331)
+..|.||||+|+..++ .++++.|+.. +.+... +..+.+|+|. ++..++..
T Consensus 137 ~~~~~~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~~~~~~~~~~~~g~t~l~~---a~~~~~~~---------- 196 (285)
T 1wdy_A 137 TKEDQERLRKGGATALMDAAEKGH-------VEVLKILLDEMGADVNACDNMGRNALIH---ALLSSDDS---------- 196 (285)
T ss_dssp CCHHHHHTTCCCCCHHHHHHHHTC-------HHHHHHHHHTSCCCTTCCCTTSCCHHHH---HHHCSCTT----------
T ss_pred cHHHHHhhccCCCcHHHHHHHcCC-------HHHHHHHHHhcCCCCCccCCCCCCHHHH---HHHccccc----------
Confidence 6778888888888888 7888888876 555443 3445555554 22111110
Q ss_pred hHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHHhhCCccccc
Q 043901 229 ACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQD 308 (331)
Q Consensus 229 ~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~ 308 (331)
....++.++++. |.. . +.++..|.||||+|+..|+.+++++|++..|++++.
T Consensus 197 ~~~~i~~~Ll~~-----g~~-----------~------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~ 248 (285)
T 1wdy_A 197 DVEAITHLLLDH-----GAD-----------V------------NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND 248 (285)
T ss_dssp THHHHHHHHHHT-----TCC-----------S------------SCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTC
T ss_pred hHHHHHHHHHHc-----CCC-----------C------------CCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccc
Confidence 011222222221 100 0 556788999999999999999999999977999999
Q ss_pred cccCCCcHHHHHHHcCccccccC
Q 043901 309 MDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 309 ~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
+|..|+||||+|+++|+.+++++
T Consensus 249 ~~~~g~t~l~~A~~~~~~~i~~~ 271 (285)
T 1wdy_A 249 TDSDGKTALLLAVELKLKKIAEL 271 (285)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHH
T ss_pred cCCCCCcHHHHHHHcCcHHHHHH
Confidence 99999999999999999999863
|
| >4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-40 Score=281.26 Aligned_cols=218 Identities=17% Similarity=0.134 Sum_probs=168.4
Q ss_pred chhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCH-HHHHHHHh
Q 043901 2 EVNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNE-AMCHCTAS 79 (331)
Q Consensus 2 ~~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~-~~v~~Ll~ 79 (331)
+.++|+.||..|+.+.|+.|++........ . ....+.. ..|.||||+|+..+.. .++++|++
T Consensus 11 ~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~---------------~-~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~ 74 (269)
T 4b93_B 11 EVEKLLRAVADGDLEMVRYLLEWTEEDLED---------------A-EDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPA 74 (269)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTCC--------------------------------------------------------
T ss_pred chhHHHHHHHcCCHHHHHHHHHCCCccccc---------------c-cccccccCccCCCHHHHHHHhCCHHHHHHHHHH
Confidence 357899999999999999999876542210 0 1224445 7889999999988775 58899999
Q ss_pred cCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCccccccc
Q 043901 80 KDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVN 159 (331)
Q Consensus 80 ~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~ 159 (331)
.|++ +|.+|.+|.||||+|+..|+.+++++|++.|+++ +.++..|.||+|+|+..++.+++++|++.|++ ++.+|
T Consensus 75 ~Gad-vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~---~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~-~n~~d 149 (269)
T 4b93_B 75 SGLG-VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANA---GARNADQAVPLHLACQQGHFQVVKCLLDSNAK-PNKKD 149 (269)
T ss_dssp CCCC-TTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCT---TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCC
T ss_pred CCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCc---CccCCCCCCccccccccChHHHHHHHHHCCCC-CCCCC
Confidence 9998 9999999999999999999999999999999999 99999999999999999999999999999998 99999
Q ss_pred CCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHH
Q 043901 160 ENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMK 239 (331)
Q Consensus 160 ~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (331)
..|.||||+|+..|+ .++++.|+..+.++
T Consensus 150 ~~g~TpL~~A~~~g~-------~~~v~~Ll~~gadv-------------------------------------------- 178 (269)
T 4b93_B 150 LSGNTPLIYACSGGH-------HELVALLLQHGASI-------------------------------------------- 178 (269)
T ss_dssp TTCCCHHHHHHHTTC-------GGGHHHHHHTTCCT--------------------------------------------
T ss_pred CCCCCHHHHHHHCCC-------HHHHHHHHHCCCCC--------------------------------------------
Confidence 999999999999999 79999998877543
Q ss_pred hchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHH
Q 043901 240 ALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLL 319 (331)
Q Consensus 240 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~ 319 (331)
+.++..|+||||+|+..|+.++|++|++ .|+|++.+|..|+||||+
T Consensus 179 ---------------------------------n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~-~Gad~~~~d~~G~TpL~~ 224 (269)
T 4b93_B 179 ---------------------------------NASNNKGNTALHEAVIEKHVFVVELLLL-HGASVQVLNKRQRTAVDC 224 (269)
T ss_dssp ---------------------------------TCBCTTSCBHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCSGGG
T ss_pred ---------------------------------CccccCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHH
Confidence 3446689999999999999999999999 699999999999999999
Q ss_pred HHHcCc
Q 043901 320 AVENRQ 325 (331)
Q Consensus 320 A~~~~~ 325 (331)
|+++++
T Consensus 225 A~~~~~ 230 (269)
T 4b93_B 225 AEQNSK 230 (269)
T ss_dssp SCTTCH
T ss_pred HHhCCc
Confidence 998876
|
| >3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=271.04 Aligned_cols=216 Identities=16% Similarity=0.167 Sum_probs=197.7
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcC
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKD 81 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 81 (331)
-.+|+.|+..|+.+.++.++...+. ..+.. ..|.||||+|+..|+.+++++|++.|
T Consensus 7 ~~~l~~A~~~g~~~~v~~ll~~~~~-----------------------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 63 (231)
T 3aji_A 7 NIMICNLAYSGKLDELKERILADKS-----------------------LATRTDQDSRTALHWACSAGHTEIVEFLLQLG 63 (231)
T ss_dssp SSHHHHHHHHTCHHHHHHHHHHCGG-----------------------GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred cchHHHHHHhCCHHHHHHHHHhchh-----------------------hhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhC
Confidence 3679999999999999999988643 23445 78999999999999999999999999
Q ss_pred cccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCC
Q 043901 82 RELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNEN 161 (331)
Q Consensus 82 ~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~ 161 (331)
++ ++.+|..|.||||+|+..|+.+++++|+++|+++ +.++..|.||||+|+..++.+++++|++.|.+ ++.++..
T Consensus 64 ~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~ 138 (231)
T 3aji_A 64 VP-VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHV---NAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHY 138 (231)
T ss_dssp CC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTT
T ss_pred CC-CCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCC
Confidence 88 9999999999999999999999999999999998 99999999999999999999999999999998 9999999
Q ss_pred CccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhc
Q 043901 162 GLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKAL 241 (331)
Q Consensus 162 g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (331)
|.||||+|+..++ .++++.|+..+.+.
T Consensus 139 g~t~L~~A~~~~~-------~~~v~~Ll~~g~~~---------------------------------------------- 165 (231)
T 3aji_A 139 DATAMHRAAAKGN-------LKMVHILLFYKAST---------------------------------------------- 165 (231)
T ss_dssp SCCHHHHHHHHTC-------HHHHHHHHHTTCCS----------------------------------------------
T ss_pred CCcHHHHHHHcCC-------HHHHHHHHhcCCCc----------------------------------------------
Confidence 9999999999998 79999988776542
Q ss_pred hhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHH
Q 043901 242 PIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAV 321 (331)
Q Consensus 242 l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~ 321 (331)
+.++..|+||||+|+..|+.+++++|++ .|++++.+|..|+||+++|+
T Consensus 166 -------------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~ 213 (231)
T 3aji_A 166 -------------------------------NIQDTEGNTPLHLACDEERVEEAKFLVT-QGASIYIENKEEKTPLQVAK 213 (231)
T ss_dssp -------------------------------CCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHSC
T ss_pred -------------------------------cccCCCCCCHHHHHHHCCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHH
Confidence 2346689999999999999999999999 69999999999999999999
Q ss_pred HcCccccccC
Q 043901 322 ENRQTSIYKL 331 (331)
Q Consensus 322 ~~~~~~iv~l 331 (331)
+.++.+++++
T Consensus 214 ~~~~~~i~~l 223 (231)
T 3aji_A 214 GGLGLILKRL 223 (231)
T ss_dssp HHHHHHHHHH
T ss_pred hhHHHHHHHH
Confidence 9999888763
|
| >1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=276.59 Aligned_cols=229 Identities=18% Similarity=0.149 Sum_probs=175.8
Q ss_pred chhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHH-HHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHh
Q 043901 2 EVNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYT-LQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTAS 79 (331)
Q Consensus 2 ~~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~-Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~ 79 (331)
+..+||.|+..|+...+.. .....+...+++ |++.+ .++.... ..|.||||+|+..|+.+++++|++
T Consensus 10 g~tpL~~A~~~g~~~~~~~----------~~~~~~~~~~v~~Ll~~g-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~ 78 (253)
T 1yyh_A 10 GFTPLMIASCSGGGLETGN----------SEEEEDAPAVISDFIYQG-ASLHNQTDRTGETALHLAARYSRSDAAKRLLE 78 (253)
T ss_dssp -----------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCcHHHHHHhccccccccc----------hhhcCCChHHHHHHHHcc-CCcccccCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence 3578999999885321110 011122344677 77777 5555555 899999999999999999999999
Q ss_pred cCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCC-CccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccc
Q 043901 80 KDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQ-AKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSV 158 (331)
Q Consensus 80 ~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~-~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~ 158 (331)
.|++ ++..|..|.||||+|+..|+.+++++|++.|+ ++ +.++..|.||||+|+..|+.+++++|++.|++ ++.+
T Consensus 79 ~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~ 153 (253)
T 1yyh_A 79 ASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL---DARMHDGTTPLILAARLAVEGMLEDLINSHAD-VNAV 153 (253)
T ss_dssp TTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCT---TCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCC-TTCB
T ss_pred cCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc---cccCCCCCcHHHHHHHcChHHHHHHHHHcCCC-CCCc
Confidence 9998 99999999999999999999999999999988 55 89999999999999999999999999999998 9999
Q ss_pred cCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHH
Q 043901 159 NENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLM 238 (331)
Q Consensus 159 ~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 238 (331)
|..|.||||+|+..++ .++++.|+..+.+.
T Consensus 154 d~~g~t~L~~A~~~~~-------~~~v~~Ll~~ga~~------------------------------------------- 183 (253)
T 1yyh_A 154 DDLGKSALHWAAAVNN-------VDAAVVLLKNGANK------------------------------------------- 183 (253)
T ss_dssp CTTSCBHHHHHHHHTC-------HHHHHHHHHTTCCT-------------------------------------------
T ss_pred CCCCCCHHHHHHHcCC-------HHHHHHHHHcCCCC-------------------------------------------
Confidence 9999999999999998 79999998877543
Q ss_pred HhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHH
Q 043901 239 KALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVL 318 (331)
Q Consensus 239 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~ 318 (331)
+.++..|.||||+|+..|+.+++++|++ .|++++.+|..|+||++
T Consensus 184 ----------------------------------~~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~ 228 (253)
T 1yyh_A 184 ----------------------------------DMQNNREETPLFLAAREGSYETAKVLLD-HFANRDITDHMDRLPRD 228 (253)
T ss_dssp ----------------------------------TCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHH
T ss_pred ----------------------------------CCcCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCccccccCCCCHHH
Confidence 3346689999999999999999999999 79999999999999999
Q ss_pred HHHHcCccccccC
Q 043901 319 LAVENRQTSIYKL 331 (331)
Q Consensus 319 ~A~~~~~~~iv~l 331 (331)
+|+++|+.+|+++
T Consensus 229 ~A~~~g~~~i~~~ 241 (253)
T 1yyh_A 229 IAQERMHHDIVRL 241 (253)
T ss_dssp HHHHTTCHHHHHH
T ss_pred HHHHcCCHHHHHH
Confidence 9999999999863
|
| >2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=266.14 Aligned_cols=216 Identities=15% Similarity=0.188 Sum_probs=191.0
Q ss_pred CchhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHh
Q 043901 1 MEVNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTAS 79 (331)
Q Consensus 1 ~~~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~ 79 (331)
++..+||.|++.|+.+.++.+++..+. ..... ..|.||||+|+..|+.+++++|++
T Consensus 1 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~-----------------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 57 (228)
T 2dzn_A 1 MSNYPLHQACMENEFFKVQELLHSKPS-----------------------LLLQKDQDGRIPLHWSVSFQAHEITSFLLS 57 (228)
T ss_dssp --CCHHHHHHHTTCHHHHHHHHHHCGG-----------------------GTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCccHHHHHHHhCCHHHHHHHHhcCcc-----------------------ccccCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 456899999999999999999988643 23334 789999999999999999999999
Q ss_pred cC--cccccc-cCCCCCcHHHHHHhcCCHHHHHHHHhcC--CCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcc
Q 043901 80 KD--RELISV-RNNDSETPLFLAALHGNMDAFLCLRSFN--QAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDL 154 (331)
Q Consensus 80 ~~--~~~~~~-~d~~g~tpLh~A~~~~~~~~~~~Ll~~g--~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~ 154 (331)
.+ .+ ++. .+..|.||||+|+..|+.+++++|++.| +++ +.++..|.||||+|+..|+.+++++|++.|++
T Consensus 58 ~~~~~~-~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~- 132 (228)
T 2dzn_A 58 KMENVN-LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL---NKITNQGVTCLHLAVGKKWFEVSQFLIENGAS- 132 (228)
T ss_dssp TCTTCC-GGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCT---TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-
T ss_pred cccccc-ccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccc---ccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCC-
Confidence 99 55 555 8889999999999999999999999999 666 88999999999999999999999999999998
Q ss_pred cccccCCCccHhHHHhcCCCcccccccchhHHHHHhhh-cccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHH
Q 043901 155 VNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYY-KTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLF 233 (331)
Q Consensus 155 ~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (331)
++.+|..|.||||+|+..++ .++++.|+..+ .+.
T Consensus 133 ~~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~g~~~~-------------------------------------- 167 (228)
T 2dzn_A 133 VRIKDKFNQIPLHRAASVGS-------LKLIELLCGLGKSAV-------------------------------------- 167 (228)
T ss_dssp SCCCCTTSCCHHHHHHHTTC-------HHHHHHHHTTTCCCS--------------------------------------
T ss_pred ccccCCCCCCHHHHHHHcCC-------HHHHHHHHhcCcccc--------------------------------------
Confidence 99999999999999999998 79999988776 321
Q ss_pred HHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCC
Q 043901 234 FWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEK 313 (331)
Q Consensus 234 ~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g 313 (331)
+.+|..|+||||+|+..|+.+++++|++..|++++.+|..|
T Consensus 168 ---------------------------------------~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g 208 (228)
T 2dzn_A 168 ---------------------------------------NWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG 208 (228)
T ss_dssp ---------------------------------------CCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTS
T ss_pred ---------------------------------------cCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCC
Confidence 34566899999999999999999999944799999999999
Q ss_pred CcHHHHHHHcCcccc
Q 043901 314 KNLVLLAVENRQTSI 328 (331)
Q Consensus 314 ~t~l~~A~~~~~~~i 328 (331)
+||+++|++.+..++
T Consensus 209 ~t~l~~A~~~~~~~~ 223 (228)
T 2dzn_A 209 AKAEDVALNEQVKKF 223 (228)
T ss_dssp CBGGGGCSSTTHHHH
T ss_pred CcHHHHHHHHHHHHH
Confidence 999999988765544
|
| >1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=267.95 Aligned_cols=220 Identities=14% Similarity=0.107 Sum_probs=188.2
Q ss_pred chhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhc
Q 043901 2 EVNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASK 80 (331)
Q Consensus 2 ~~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~ 80 (331)
+.++||.|+..|+.+.++.+++... +. ...++.. ..|.||||+|+..|+.+++++|++.
T Consensus 9 g~t~L~~A~~~g~~~~v~~Ll~~~~------------------~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 68 (241)
T 1k1a_A 9 GDTPLHIAVVQGNLPAVHRLVNLFQ------------------QG--GRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 68 (241)
T ss_dssp TCCHHHHHHHTTCHHHHHHHHHHHH------------------HT--TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCcHHHHHHHcCCHHHHHHHHHHHH------------------hc--CCCCCcccccCCCHHHHHHHcCCHHHHHHHHHc
Confidence 3578999999999999888886311 01 1224555 7889999999999999999999998
Q ss_pred CcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCC----CccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccc
Q 043901 81 DRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQ----AKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVN 156 (331)
Q Consensus 81 ~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~----~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~ 156 (331)
|++ ++..|..|.||||+|+..|+.+++++|++.++ ++ +..+..|.||||+|+..|+.+++++|++.|.+ ++
T Consensus 69 g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~ 143 (241)
T 1k1a_A 69 GAS-PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDL---EARNYDGLTALHVAVNTECQETVQLLLERGAD-ID 143 (241)
T ss_dssp TCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TT
T ss_pred CCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccc---cccCcCCCcHHHHHHHcCCHHHHHHHHHcCCC-cc
Confidence 887 88889999999999999999999999999887 55 78888999999999999999999999999888 88
Q ss_pred ccc-CCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHH
Q 043901 157 SVN-ENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFW 235 (331)
Q Consensus 157 ~~~-~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (331)
..+ ..|.||||+|+..++ .++++.|+..+.+.
T Consensus 144 ~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~g~~~---------------------------------------- 176 (241)
T 1k1a_A 144 AVDIKSGRSPLIHAVENNS-------LSMVQLLLQHGANV---------------------------------------- 176 (241)
T ss_dssp CCCTTTCCCHHHHHHHTTC-------HHHHHHHHHTTCCT----------------------------------------
T ss_pred cccccCCCcHHHHHHHcCC-------HHHHHHHHHcCCCC----------------------------------------
Confidence 777 789999999999988 78888888776542
Q ss_pred HHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCc
Q 043901 236 LLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKN 315 (331)
Q Consensus 236 ~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t 315 (331)
+.++..|+||||+|+..|+.+++++|++ .|++++.+|..|+|
T Consensus 177 -------------------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t 218 (241)
T 1k1a_A 177 -------------------------------------NAQMYSGSSALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDT 218 (241)
T ss_dssp -------------------------------------TCBCTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCC
T ss_pred -------------------------------------CCcCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCCcCCCCCC
Confidence 3446689999999999999999999999 79999999999999
Q ss_pred HHHHHHHcCccccccC
Q 043901 316 LVLLAVENRQTSIYKL 331 (331)
Q Consensus 316 ~l~~A~~~~~~~iv~l 331 (331)
|+|+|++.|+.++++.
T Consensus 219 pl~~A~~~~~~~i~~~ 234 (241)
T 1k1a_A 219 PLMVARSRRVIDILRG 234 (241)
T ss_dssp TTTTCSSHHHHHHHTC
T ss_pred HHHHHHhcCcHHHHhh
Confidence 9999999999999874
|
| >3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=275.14 Aligned_cols=250 Identities=13% Similarity=0.091 Sum_probs=165.0
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcC
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKD 81 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 81 (331)
...||.|++.|+.+.+.+++...+....... ++ ...+..+ ..|.||||+|+..|+.+++++|++.|
T Consensus 16 ~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~---------l~----~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g 82 (285)
T 3d9h_A 16 PRGSHMASMDGKQGGMDGSKPAGPRDFPGIR---------LL----SNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQG 82 (285)
T ss_dssp --------------------------CCSEE---------CC----CCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHhhcCCCCCcccCCCCccccccchh---------hh----hCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 4679999999999999998876554110000 01 1123445 77888888888888888888888888
Q ss_pred cccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCC
Q 043901 82 RELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNEN 161 (331)
Q Consensus 82 ~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~ 161 (331)
++ ++.+|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|++.|++ ++..+ .
T Consensus 83 ~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~-~ 156 (285)
T 3d9h_A 83 WA-VNIITADHVSPLHEACLGGHLSCVKILLKHGAQV---NGVTADWHTPLFNACVSGSWDCVNLLLQHGAS-VQPES-D 156 (285)
T ss_dssp CC-SCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCS---SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SSCSC-T
T ss_pred CC-CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCC-CCCCC-C
Confidence 77 8888888888888888888888888888888877 88888888888888888888888888888876 55433 4
Q ss_pred CccHhHHHhcCCCcccccccchhHHHHHhhhcccCc-CCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHh
Q 043901 162 GLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGE-ANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKA 240 (331)
Q Consensus 162 g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (331)
|.||||+|+..++ .++++.|+..+.+... +..+.+|++.
T Consensus 157 g~t~L~~A~~~g~-------~~~v~~Ll~~g~~~~~~d~~g~t~L~~--------------------------------- 196 (285)
T 3d9h_A 157 LASPIHEAARRGH-------VECVNSLIAYGGNIDHKISHLGTPLYL--------------------------------- 196 (285)
T ss_dssp TSCHHHHHHHHTC-------HHHHHHHHHTTCCTTCCBTTTBCHHHH---------------------------------
T ss_pred CCCHHHHHHHcCC-------HHHHHHHHHCCCCCCCcCCCCCCHHHH---------------------------------
Confidence 8888888888887 6888888887766543 3334444332
Q ss_pred chhhhccCCccchhhhhhhhchhhHHHHHhhh---hccCCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHH
Q 043901 241 LPIVLGLGLKNFKISIIPYIKKVQGLKFMEKK---DQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLV 317 (331)
Q Consensus 241 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l 317 (331)
++..+..+.+++|.+. -..+..|.||||+|+..|+.+++++|++ .|++++.+|..|+||+
T Consensus 197 ----------------A~~~~~~~~v~~Ll~~ga~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~t~l 259 (285)
T 3d9h_A 197 ----------------ACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLMD-FGADTQAKNAEGKRPV 259 (285)
T ss_dssp ----------------HHHTTCHHHHHHHHHTTCCTTCCBTTBCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCGG
T ss_pred ----------------HHHcCcHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHH
Confidence 2233333444444433 1136689999999999999999999999 6999999999999999
Q ss_pred HHHHHcCcccccc
Q 043901 318 LLAVENRQTSIYK 330 (331)
Q Consensus 318 ~~A~~~~~~~iv~ 330 (331)
|+|+. +.++++
T Consensus 260 ~~A~~--~~~~~~ 270 (285)
T 3d9h_A 260 ELVPP--ESPLAQ 270 (285)
T ss_dssp GGSCT--TSHHHH
T ss_pred HHhcC--ccHHHH
Confidence 99994 445544
|
| >3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-37 Score=262.08 Aligned_cols=211 Identities=14% Similarity=0.053 Sum_probs=149.0
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcC
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKD 81 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 81 (331)
.++|+.|+..|+.+.++.+++.+.. ++.. ..|.||||+|+..|+.+++++|++.|
T Consensus 12 ~t~L~~A~~~g~~~~v~~Ll~~g~~------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 67 (237)
T 3b7b_A 12 RSPLHAAAEAGHVDICHMLVQAGAN------------------------IDTCSEDQRTPLMEAAENNHLEAVKYLIKAG 67 (237)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCC------------------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred CCHHHHHHHcCcHHHHHHHHHcCCC------------------------cCccCCCCCCHHHHHHHhCCHHHHHHHHhCC
Confidence 3566666666666666666655321 2233 55666666666666666666666666
Q ss_pred cccccccCCCCCcHHHHHHhcCCHHHHHHHHhcC-CCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccC
Q 043901 82 RELISVRNNDSETPLFLAALHGNMDAFLCLRSFN-QAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNE 160 (331)
Q Consensus 82 ~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g-~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~ 160 (331)
++ ++..+..|.||||+|+..|+.+++++|++.| .++ +.++..|.||||+|+..++.+++++|++.|++ ++.++.
T Consensus 68 ~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~ 142 (237)
T 3b7b_A 68 AL-VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDV---NCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD-INIRDN 142 (237)
T ss_dssp CC-CCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCT
T ss_pred CC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCc---ccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCccCC
Confidence 65 6666666666666666666666666666666 444 66666666666666666666666666666665 666666
Q ss_pred CCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHh
Q 043901 161 NGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKA 240 (331)
Q Consensus 161 ~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (331)
.|.||||+|+..++ .++++.|+..+.+.
T Consensus 143 ~g~t~L~~A~~~~~-------~~~~~~Ll~~g~~~--------------------------------------------- 170 (237)
T 3b7b_A 143 EENICLHWAAFSGC-------VDIAEILLAAKCDL--------------------------------------------- 170 (237)
T ss_dssp TSCCHHHHHHHHCC-------HHHHHHHHTTTCCT---------------------------------------------
T ss_pred CCCCHHHHHHHCCC-------HHHHHHHHHcCCCC---------------------------------------------
Confidence 66666666666666 56666665554332
Q ss_pred chhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHH
Q 043901 241 LPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLA 320 (331)
Q Consensus 241 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A 320 (331)
+.+|..|.||||+|+..|+.+++++|++ .|++++.+|..|+||+|+|
T Consensus 171 --------------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~t~l~~A 217 (237)
T 3b7b_A 171 --------------------------------HAVNIHGDSPLHIAARENRYDCVVLFLS-RDSDVTLKNKEGETPLQCA 217 (237)
T ss_dssp --------------------------------TCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCTTSCCHHHHS
T ss_pred --------------------------------CCcCCCCCCHHHHHHHhCCHhHHHHHHH-cCCCCCccCCCCCCHHHHH
Confidence 3456689999999999999999999999 6999999999999999999
Q ss_pred HHcCccc
Q 043901 321 VENRQTS 327 (331)
Q Consensus 321 ~~~~~~~ 327 (331)
+.+++.+
T Consensus 218 ~~~~~~~ 224 (237)
T 3b7b_A 218 SLNSQVW 224 (237)
T ss_dssp CTTCHHH
T ss_pred HHHHHHH
Confidence 9999874
|
| >1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-38 Score=269.39 Aligned_cols=217 Identities=12% Similarity=0.036 Sum_probs=173.3
Q ss_pred chhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhc
Q 043901 2 EVNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASK 80 (331)
Q Consensus 2 ~~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~ 80 (331)
+.++||.|++.|+.+.++.|++.... ...++.+ ..|.||||+|+..|+.+++++|++.
T Consensus 9 g~t~L~~A~~~g~~~~v~~Ll~~g~~---------------------~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 67 (282)
T 1oy3_D 9 GDTALHLAVIHQHEPFLDFLLGFSAG---------------------HEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67 (282)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHHHTT---------------------SGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCC---------------------cccccccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 35789999999999999988876433 1225556 7899999999999999999999999
Q ss_pred CcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCc------------------------------------------
Q 043901 81 DRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAK------------------------------------------ 118 (331)
Q Consensus 81 ~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~------------------------------------------ 118 (331)
|++ ++.+|..|.||||+|+..|+.+++++|++.|++.
T Consensus 68 ga~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (282)
T 1oy3_D 68 GAG-VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDED 146 (282)
T ss_dssp TCC-SSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCC
T ss_pred CCC-CCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhh
Confidence 988 9999999999999999999999999999988652
Q ss_pred --cccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccC-CCccHhHHHhcCCCcccccccchhHHHHHhhhccc
Q 043901 119 --DNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNE-NGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTK 195 (331)
Q Consensus 119 --~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~-~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~ 195 (331)
..++.++..|.||||+|+..|+.+++++|++.|++ ++.++. .|.||||+|+..++ .++++.|+..+.+.
T Consensus 147 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~-------~~~v~~Ll~~gad~ 218 (282)
T 1oy3_D 147 WRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD-LNKPEPTCGRTPLHLAVEAQA-------ASVLELLLKAGADP 218 (282)
T ss_dssp GGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTC-------HHHHHHHHHTTCCT
T ss_pred hhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCcCHHHHHHHcCC-------HHHHHHHHHcCCCC
Confidence 02467888999999999999999999999999988 888875 49999999999998 78999988876543
Q ss_pred CcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhcc
Q 043901 196 GEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQ 275 (331)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 275 (331)
+.+
T Consensus 219 -----------------------------------------------------------------------------~~~ 221 (282)
T 1oy3_D 219 -----------------------------------------------------------------------------TAR 221 (282)
T ss_dssp -----------------------------------------------------------------------------TCC
T ss_pred -----------------------------------------------------------------------------ccc
Confidence 345
Q ss_pred CCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHHHcCcc
Q 043901 276 SGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQT 326 (331)
Q Consensus 276 ~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~ 326 (331)
|..|+||||+|+..|+.+++++|++ +|++++.+|..|+||+++|......
T Consensus 222 d~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~a~~~~~~ 271 (282)
T 1oy3_D 222 MYGGRTPLGSALLRPNPILARLLRA-HGAPEPEDGGDKLSPCSSSGSDSDS 271 (282)
T ss_dssp CTTSCCHHHHHHTSSCHHHHHHHHH-TTCCCCCCC----------------
T ss_pred ccCCCCHHHHHHHcCCcHHHHHHHH-cCCCcCcCCCcccccccccCCcccc
Confidence 6689999999999999999999999 7999999999999999999876653
|
| >3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-37 Score=272.38 Aligned_cols=238 Identities=13% Similarity=0.059 Sum_probs=178.5
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcC
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKD 81 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 81 (331)
.++|+.|++.|+.+.++.++...+. .++.. ..|.||||+|+..|+.+++++|++.|
T Consensus 25 ~~~L~~A~~~g~~~~v~~ll~~~~~-----------------------~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g 81 (351)
T 3utm_A 25 KDELLEAARSGNEEKLMALLTPLNV-----------------------NCHASDGRKSTPLHLAAGYNRVRIVQLLLQHG 81 (351)
T ss_dssp HHHHHHHHHHTCHHHHHHHCCTTTT-----------------------TCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred chhHHHHHHcCCHHHHHHHHHhcCC-----------------------CcccCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 4789999999999999999976432 23444 66778888888888888888888877
Q ss_pred cccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccc---
Q 043901 82 RELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSV--- 158 (331)
Q Consensus 82 ~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~--- 158 (331)
++ ++.+|..|.||||+|+..|+.+++++|+++|+++ +.++..|.||||+|+..|+.+++++|++.|++ ++..
T Consensus 82 ~~-~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~ 156 (351)
T 3utm_A 82 AD-VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACV---NAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD-PTLVNCH 156 (351)
T ss_dssp CC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTT
T ss_pred CC-CCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CccccCC
Confidence 76 7777778888888888888888888888888777 77777788888888888888888888887766 4433
Q ss_pred ---------------------------------------------------cCCCccHhHHHhcCCCcccccccchhHHH
Q 043901 159 ---------------------------------------------------NENGLTRLHILASKPTAFKRGSRLGLFDR 187 (331)
Q Consensus 159 ---------------------------------------------------~~~g~t~l~~A~~~~~~~~~~~~~~~~~~ 187 (331)
+..|.||||+|+..++ ....++++.
T Consensus 157 g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~----~~~~~~~~~ 232 (351)
T 3utm_A 157 GKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLH----PKRKQVAEL 232 (351)
T ss_dssp SCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCS----TTHHHHHHH
T ss_pred CCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhC----ccHHHHHHH
Confidence 3556788888888754 112577788
Q ss_pred HHhhhcccCc-CCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHH
Q 043901 188 IIHYYKTKGE-ANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGL 266 (331)
Q Consensus 188 li~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 266 (331)
|+..+.++.. +..+.+|+|. ++..+..+.+
T Consensus 233 Ll~~g~~~~~~~~~g~t~L~~-------------------------------------------------A~~~g~~~~v 263 (351)
T 3utm_A 233 LLRKGANVNEKNKDFMTPLHV-------------------------------------------------AAERAHNDVM 263 (351)
T ss_dssp HHHTTCCTTCCCTTCCCHHHH-------------------------------------------------HHHTTCHHHH
T ss_pred HHHcCCCcCCcCCCCCCHHHH-------------------------------------------------HHHcCCHHHH
Confidence 8887776643 3344455443 2233334444
Q ss_pred HHHhhh----hccCCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHHH
Q 043901 267 KFMEKK----DQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVE 322 (331)
Q Consensus 267 ~~l~~~----~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~ 322 (331)
++|.+. +.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||+++|.+
T Consensus 264 ~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~gad~~~~~~~g~tal~~a~~ 322 (351)
T 3utm_A 264 EVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLS-YGSDPSIISLQGFTAAQMGNE 322 (351)
T ss_dssp HHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHSCH
T ss_pred HHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH-cCCCCCCcCCCCCChhhhhhH
Confidence 444433 5678899999999999999999999999 699999999999999999844
|
| >2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=258.94 Aligned_cols=201 Identities=20% Similarity=0.184 Sum_probs=184.1
Q ss_pred HHH-HHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCC-
Q 043901 40 LYT-LQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQ- 116 (331)
Q Consensus 40 ~v~-Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~- 116 (331)
+++ |++.+ .++.... ..|.||||+|+..|+.+++++|++.|++ ++..|..|.||||+|+..|+.+++++|++.++
T Consensus 6 ~i~~Ll~~g-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~ 83 (223)
T 2f8y_A 6 VISDFIYQG-ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 83 (223)
T ss_dssp CEETTEETT-CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTS
T ss_pred HHHHHHHcC-CCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 567 78887 5656665 8999999999999999999999999988 99999999999999999999999999999988
Q ss_pred CccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccC
Q 043901 117 AKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKG 196 (331)
Q Consensus 117 ~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~ 196 (331)
++ +.++..|.||||+|+..++.+++++|++.|++ ++.+|..|.||||+|+..++ .++++.|+..+.+.
T Consensus 84 ~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~g~~~- 151 (223)
T 2f8y_A 84 DL---DARMHDGTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNN-------VDAAVVLLKNGANK- 151 (223)
T ss_dssp CT---TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTC-------HHHHHHHHHTTCCT-
T ss_pred Cc---ccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCC-CcCcCCCCCcHHHHHHHcCC-------HHHHHHHHHcCCCC-
Confidence 55 88999999999999999999999999999998 99999999999999999998 79999998876542
Q ss_pred cCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccC
Q 043901 197 EANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQS 276 (331)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 276 (331)
+.++
T Consensus 152 ----------------------------------------------------------------------------~~~~ 155 (223)
T 2f8y_A 152 ----------------------------------------------------------------------------DMQN 155 (223)
T ss_dssp ----------------------------------------------------------------------------TCCC
T ss_pred ----------------------------------------------------------------------------CCcC
Confidence 3346
Q ss_pred CCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHHHcCccccccC
Q 043901 277 GRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 277 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
..|.||||+|+..|+.+++++|++ .|++++.+|..|+||+++|+++++.+++++
T Consensus 156 ~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~ 209 (223)
T 2f8y_A 156 NREETPLFLAAREGSYETAKVLLD-HFANRDITDHMDRLPRDIAQERMHHDIVRL 209 (223)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred CCCcCHHHHHHHcCCHHHHHHHHH-cCCCCccccccCCCHHHHHHHhcchHHHHH
Confidence 689999999999999999999999 699999999999999999999999999863
|
| >2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-38 Score=281.07 Aligned_cols=233 Identities=15% Similarity=0.104 Sum_probs=195.5
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccc-cCCccH-----------HHH-HH--------hhhCCCcceec-cCCCc
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKL-TNLETQ-----------LYT-LQ--------QQLGKPILYIR-LGGNH 60 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~-~~~~t~-----------~v~-Ll--------~~~~~~~~~~~-~~g~t 60 (331)
..+||.|+..|. +.++.++... ..... ..+.|| +++ |+ +.| .+ ++.. ..|.|
T Consensus 95 ~t~L~~Aa~~~~-~~~~~L~~~~---~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~g-a~-vn~~d~~g~T 168 (373)
T 2fo1_E 95 PIKLHTEAAGSY-AITEPITRES---VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAG-AD-VNAMDCDENT 168 (373)
T ss_dssp CCHHHHHHHSSS-CCCSCCSTTT---TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTC-CC-TTCCCTTSCC
T ss_pred ccHHHHHhcCCc-hHHHHhcccc---ccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcC-CC-CcCCCCCCCC
Confidence 467888888554 5444443321 11222 233566 444 44 666 33 5566 89999
Q ss_pred hhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcC---CCccccccccCCCCcHHHHHHh
Q 043901 61 GRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFN---QAKDNRQCRKNNGETILHSAIS 137 (331)
Q Consensus 61 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g---~~~~~~~~~~~~g~t~Lh~A~~ 137 (331)
|||+|+..|+.+++++|++.|++ ++..|..|.||||+|+..|+.+++++|++.+ +++ +.++..|.||||+|+.
T Consensus 169 pL~~A~~~g~~~iv~~Ll~~ga~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~---~~~d~~g~t~L~~A~~ 244 (373)
T 2fo1_E 169 PLMLAVLARRRRLVAYLMKAGAD-PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI---EELDRNGMTALMIVAH 244 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT---SCCCTTSCCHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHCCCC-CcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccCh---hhcCCCCCCHHHHHHH
Confidence 99999999999999999999998 9999999999999999999999999999998 677 8999999999999999
Q ss_pred cC---CHHHHHHHHHhCCccccc--------ccCCCccHhHHHhcCCCcccccccchhHHHHHhhh-cccCcCCCCCCCc
Q 043901 138 GE---YFSIAFQIMRAYPDLVNS--------VNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYY-KTKGEANDEESPE 205 (331)
Q Consensus 138 ~~---~~~~~~~Ll~~~~~~~~~--------~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~-~~~~~~~~~~~~~ 205 (331)
.+ +.+++++|++.|++ ++. .|..|.||||+|+..++ .++++.|+..+ .+.
T Consensus 245 ~~~~~~~~~v~~Ll~~g~~-~~~~~~~~~~~~d~~g~t~Lh~A~~~g~-------~~~v~~Ll~~~~~~~---------- 306 (373)
T 2fo1_E 245 NEGRDQVASAKLLVEKGAK-VDYDGAARKDSEKYKGRTALHYAAQVSN-------MPIVKYLVGEKGSNK---------- 306 (373)
T ss_dssp SCSTTHHHHHHHHHHHTCC-SSCCSGGGTSSSSCCCCCTHHHHHSSCC-------HHHHHHHHHHSCCCT----------
T ss_pred hCCcchHHHHHHHHHCCCC-cccccccccCcccccCCCHHHHHHHhCC-------HHHHHHHHHhcCCCc----------
Confidence 98 89999999999988 665 67789999999999999 79999988765 221
Q ss_pred ccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHH
Q 043901 206 CNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILI 285 (331)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~ 285 (331)
+.+|..|+||||+
T Consensus 307 -------------------------------------------------------------------n~~d~~g~TpL~~ 319 (373)
T 2fo1_E 307 -------------------------------------------------------------------DKQDEDGKTPIML 319 (373)
T ss_dssp -------------------------------------------------------------------TCCCTTCCCHHHH
T ss_pred -------------------------------------------------------------------cCcCCCCCCHHHH
Confidence 4457789999999
Q ss_pred HHhcChHHHHHHHHhhCCccccccccCCCcHHHHHHHcCccccccC
Q 043901 286 AAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 286 A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
|+..|+.++|++|++ .|++++.+|..|+||||+|+.+|+.+||++
T Consensus 320 A~~~g~~~iv~~Ll~-~gad~~~~d~~g~t~l~~A~~~g~~~iv~~ 364 (373)
T 2fo1_E 320 AAQEGRIEVVMYLIQ-QGASVEAVDATDHTARQLAQANNHHNIVDI 364 (373)
T ss_dssp HHHHTCHHHHHHHHH-TTCCSSCCCSSSCCHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHH-cCCCccCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 999999999999999 699999999999999999999999999873
|
| >3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-37 Score=276.77 Aligned_cols=218 Identities=15% Similarity=0.148 Sum_probs=188.8
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcC
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKD 81 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 81 (331)
..+||.|+..|+.+.++.|++.+.+ ++.. ..|.||||+|+..|+.+++++|++.+
T Consensus 21 ~t~L~~Aa~~g~~~~v~~Ll~~g~~------------------------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g 76 (364)
T 3ljn_A 21 MEKIHVAARKGQTDEVRRLIETGVS------------------------PTIQNRFGCTALHLACKFGCVDTAKYLASVG 76 (364)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCC------------------------TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHC
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCC------------------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHCC
Confidence 4689999999999999998887422 4445 78999999999999999999999998
Q ss_pred cccccccCCCCCcHHHHHHhcCCHHHHHHHHhc----CCCcccccc-----------------ccCCCCcHHHHHHhcC-
Q 043901 82 RELISVRNNDSETPLFLAALHGNMDAFLCLRSF----NQAKDNRQC-----------------RKNNGETILHSAISGE- 139 (331)
Q Consensus 82 ~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~----g~~~~~~~~-----------------~~~~g~t~Lh~A~~~~- 139 (331)
++ ++ +..|.||||+|+..|+.+++++|++. |+++ +. ++..|.||||+|+..|
T Consensus 77 ~~-~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~ 150 (364)
T 3ljn_A 77 EV-HS--LWHGQKPIHLAVMANKTDLVVALVEGAKERGQMP---ESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGP 150 (364)
T ss_dssp CC-CC--CBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCH---HHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCG
T ss_pred CC-cc--ccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCH---HHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCC
Confidence 85 43 34799999999999999999999998 7776 55 8889999999999999
Q ss_pred -CHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCc
Q 043901 140 -YFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDK 218 (331)
Q Consensus 140 -~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (331)
+.+++++|++.|++ ++.+|..|.||||+|+..++ .++++.|+..+.+....
T Consensus 151 ~~~~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~g~-------~~~v~~Ll~~g~~~~~~-------------------- 202 (364)
T 3ljn_A 151 EYLEMIKILVQLGAS-PTAKDKADETPLMRAMEFRN-------REALDLMMDTVPSKSSL-------------------- 202 (364)
T ss_dssp GGHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTC-------HHHHHHHHHHCSCSSSC--------------------
T ss_pred chHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCC-------HHHHHHHHhcccccccc--------------------
Confidence 99999999999988 99999999999999999998 79999998877652210
Q ss_pred cCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHH
Q 043901 219 CGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKI 298 (331)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~L 298 (331)
.. +.++..|+||||+|+..|+.++|++|
T Consensus 203 ----------------------------------------~~------------~~~~~~g~t~L~~A~~~g~~~~v~~L 230 (364)
T 3ljn_A 203 ----------------------------------------RL------------DYANKQGNSHLHWAILINWEDVAMRF 230 (364)
T ss_dssp ----------------------------------------CT------------TCCCTTCCCTTHHHHTTTCHHHHHHH
T ss_pred ----------------------------------------cc------------cccCCCCCcHHHHHHHcCCHHHHHHH
Confidence 00 45577899999999999999999999
Q ss_pred HhhCCccccccccCCCcHHHHHHHcCccccccC
Q 043901 299 LDTFPVAMQDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 299 l~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
++ .|++++.+|..|+||||+|+.+|+.++|++
T Consensus 231 l~-~gad~~~~d~~g~tpL~~A~~~g~~~~v~~ 262 (364)
T 3ljn_A 231 VE-MGIDVNMEDNEHTVPLYLSVRAAMVLLTKE 262 (364)
T ss_dssp HT-TTCCTTCCCTTSCCHHHHHHHTCCHHHHHH
T ss_pred HH-cCCCCCCCCCCCCCHHHHHHHhChHHHHHH
Confidence 99 799999999999999999999999999863
|
| >4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=269.03 Aligned_cols=274 Identities=16% Similarity=0.113 Sum_probs=210.9
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec--cCCCchhhhhhccCCHHHHHHHHhc
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR--LGGNHGRKYIKPLGNEAMCHCTASK 80 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~--~~g~t~Lh~A~~~g~~~~v~~Ll~~ 80 (331)
..+|+.||+.|+.+.|+.|++.+.+ ++.+ ..|.||||+|+..|+.++|++|+++
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~Gad------------------------vn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ 81 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEGGAN------------------------VNFQEEEGGWTPLHNAVQMSREDIVELLLRH 81 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCC------------------------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred ChHHHHHHHcCCHHHHHHHHHCCCC------------------------CCccCCCCCcCHHHHHHHcCCHHHHHHHHHc
Confidence 3579999999999999999987532 3333 5699999999999999999999999
Q ss_pred CcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCccccc---
Q 043901 81 DRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNS--- 157 (331)
Q Consensus 81 ~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~--- 157 (331)
|++ ++.++..+.+|++.++..+...++..+++.++++ +.+|..|.||||+|+..|+.+++++|++.|++ ++.
T Consensus 82 ga~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~-~~~~~~ 156 (337)
T 4g8k_A 82 GAD-PVLRKKNGATPFILAAIAGSVKLLKLFLSKGADV---NECDFYGFTAFMEAAVYGKVKALKFLYKRGAN-VNLRRK 156 (337)
T ss_dssp TCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT---TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCC
T ss_pred CCc-hhhhccCCCchhHHHHhcccchhhHHhhhccchh---hhhccCCCCHHHHHHHcCcHHHHHHHHHcCCC-cchhhc
Confidence 998 9999999999999999999999999999999998 99999999999999999999999999999987 543
Q ss_pred -------ccCCCccHhHHHhcCCCcccccccchhHHHHHhh-hcccCc-CCCCCCCcccccccccCCCCccCCCCCcchh
Q 043901 158 -------VNENGLTRLHILASKPTAFKRGSRLGLFDRIIHY-YKTKGE-ANDEESPECNRSISFSKNDDKCGQFFPPNYA 228 (331)
Q Consensus 158 -------~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (331)
.+..|.||||+|+..|+ .++++.|+.. +.++.. +..+.++++....+. ...
T Consensus 157 ~~~~~~~~~~~g~T~L~~A~~~g~-------~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~-------------~~~ 216 (337)
T 4g8k_A 157 TKEDQERLRKGGATALMDAAEKGH-------VEVLKILLDEMGADVNACDNMGRNALIHALLSS-------------DDS 216 (337)
T ss_dssp CC-----CTTCSCCHHHHHHHHTC-------HHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHS-------------CTT
T ss_pred cccccccccCCCCcHHHHHHHCCC-------HHHHHHHHhccCCCcCccCCCCCcHHHHHHHHc-------------Ccc
Confidence 34579999999999999 7999999964 555543 334445544311111 011
Q ss_pred hHHHHHHHHHHhchhhhccCCccc-hhhhhhhhchhhHHHHHhhh-----hccCCCCchHHHHHHhcChHHHHHHHHhhC
Q 043901 229 ACFLFFWLLMKALPIVLGLGLKNF-KISIIPYIKKVQGLKFMEKK-----DQQSGRNETAILIAAKMGVAEMVKKILDTF 302 (331)
Q Consensus 229 ~~~~~~~~l~~~~l~~~g~~~~~~-~~~~~~~~~~~~~~~~l~~~-----~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~ 302 (331)
....++.+|++........+.... +++.++..+..+.++.|... +.+|..|+||||+|++.|+.++|++|++ .
T Consensus 217 ~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~-~ 295 (337)
T 4g8k_A 217 DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK-R 295 (337)
T ss_dssp THHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHT-T
T ss_pred cHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHH-C
Confidence 122344555543322221111111 46667777777777777653 5678888899999998888999988888 6
Q ss_pred CccccccccCCCcHHHHHHHcCccccccC
Q 043901 303 PVAMQDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 303 ~~~~~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
|++++. ++|||+|+++|+.+||++
T Consensus 296 GAd~n~-----~~~L~~A~~~~~~~iv~~ 319 (337)
T 4g8k_A 296 GASTDC-----GDLVMTARRNYDHSLVKV 319 (337)
T ss_dssp SCSSTT-----CCHHHHHHHTTCHHHHHH
T ss_pred CCCCCC-----CCHHHHHHHcCCHHHHHH
Confidence 888764 458889988888888763
|
| >3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=255.15 Aligned_cols=217 Identities=14% Similarity=0.123 Sum_probs=187.3
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcC
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKD 81 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 81 (331)
..+|+.|+..|+.+.++.+++.+.. ++.. ..|.||||+|+..|+.+++++|++.+
T Consensus 10 ~~~l~~A~~~g~~~~~~~Ll~~g~~------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~ 65 (240)
T 3eu9_A 10 TWDIVKATQYGIYERCRELVEAGYD------------------------VRQPDKENVTLLHWAAINNRIDLVKYYISKG 65 (240)
T ss_dssp GCCHHHHHHTTCHHHHHHHHHTTCC------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred chHHHHHHHcCChHHHHHHHHcCCC------------------------cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 4679999999999999999887432 3444 77999999999999999999999999
Q ss_pred cccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCC
Q 043901 82 RELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNEN 161 (331)
Q Consensus 82 ~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~ 161 (331)
++.....+..|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|+..|+.+++++|++.|.+ ++.++..
T Consensus 66 ~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~ 141 (240)
T 3eu9_A 66 AIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADP---SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD-VDMMDQN 141 (240)
T ss_dssp CCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTT
T ss_pred CcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCC---cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCC-ccccCCC
Confidence 8844445556999999999999999999999999988 88999999999999999999999999999988 9999999
Q ss_pred CccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhc
Q 043901 162 GLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKAL 241 (331)
Q Consensus 162 g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (331)
|.||||+|+..++. ..+++.++..+.+..
T Consensus 142 g~t~l~~a~~~~~~------~~~~~~L~~~~~~~~--------------------------------------------- 170 (240)
T 3eu9_A 142 GMTPLMWAAYRTHS------VDPTRLLLTFNVSVN--------------------------------------------- 170 (240)
T ss_dssp SCCHHHHHHHHCCS------STTHHHHHHTTCCTT---------------------------------------------
T ss_pred CCcHHHHHHHhCCh------HHHHHHHHhcCCCcc---------------------------------------------
Confidence 99999999966653 467777766665433
Q ss_pred hhhhccCCccchhhhhhhhchhhHHHHHhhhhccCC-CCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHH
Q 043901 242 PIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSG-RNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLA 320 (331)
Q Consensus 242 l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A 320 (331)
..+. .|.||||+|+..|+.+++++|++ .|++++.+|..|+||+++|
T Consensus 171 --------------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A 217 (240)
T 3eu9_A 171 --------------------------------LGDKYHKNTALHWAVLAGNTTVISLLLE-AGANVDAQNIKGESALDLA 217 (240)
T ss_dssp --------------------------------CCCTTTCCCHHHHHHHHTCHHHHHHHHH-HTCCTTCBCTTSCBHHHHH
T ss_pred --------------------------------hhhccCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHH
Confidence 2232 69999999999999999999999 5999999999999999999
Q ss_pred HHcCccccccC
Q 043901 321 VENRQTSIYKL 331 (331)
Q Consensus 321 ~~~~~~~iv~l 331 (331)
+++|+.+++++
T Consensus 218 ~~~~~~~~v~~ 228 (240)
T 3eu9_A 218 KQRKNVWMINH 228 (240)
T ss_dssp HHTTCHHHHHH
T ss_pred HHcCcHHHHHH
Confidence 99999999863
|
| >1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-37 Score=265.14 Aligned_cols=192 Identities=15% Similarity=0.116 Sum_probs=172.6
Q ss_pred ceec-cCCCchhhhhhccCCHHHHHHHHhcCcc--cccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCC
Q 043901 52 LYIR-LGGNHGRKYIKPLGNEAMCHCTASKDRE--LISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNG 128 (331)
Q Consensus 52 ~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~--~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g 128 (331)
++.. ..|.||||+|+..|+.+++++|++.+++ .++.+|..|.||||+|+..|+.+++++|+++|+++ +.++..|
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~---~~~~~~g 78 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV---LVAERGG 78 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS---SCCCTTS
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCC
Confidence 4455 8899999999999999999999998765 37889999999999999999999999999999999 9999999
Q ss_pred CcHHHHHHhcCCHHHHHHHHHhCCc----------------------------------------------ccccccCCC
Q 043901 129 ETILHSAISGEYFSIAFQIMRAYPD----------------------------------------------LVNSVNENG 162 (331)
Q Consensus 129 ~t~Lh~A~~~~~~~~~~~Ll~~~~~----------------------------------------------~~~~~~~~g 162 (331)
.||||+|+..|+.+++++|++.++. +++.++..|
T Consensus 79 ~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 158 (282)
T 1oy3_D 79 HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDG 158 (282)
T ss_dssp CCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTS
T ss_pred CCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCC
Confidence 9999999999999999999997754 256678899
Q ss_pred ccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhch
Q 043901 163 LTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALP 242 (331)
Q Consensus 163 ~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 242 (331)
.||||+|+..++ .++++.|+..+.++.
T Consensus 159 ~t~L~~A~~~g~-------~~~v~~Ll~~g~~~~---------------------------------------------- 185 (282)
T 1oy3_D 159 HTPLHVAVIHKD-------AEMVRLLRDAGADLN---------------------------------------------- 185 (282)
T ss_dssp CCHHHHHHHTTC-------HHHHHHHHHHTCCTT----------------------------------------------
T ss_pred cCHHHHHHHcCC-------HHHHHHHHHcCCCCC----------------------------------------------
Confidence 999999999998 799999988775533
Q ss_pred hhhccCCccchhhhhhhhchhhHHHHHhhhhccC-CCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHH
Q 043901 243 IVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQS-GRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAV 321 (331)
Q Consensus 243 ~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~ 321 (331)
.++ ..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+
T Consensus 186 -------------------------------~~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~ 233 (282)
T 1oy3_D 186 -------------------------------KPEPTCGRTPLHLAVEAQAASVLELLLK-AGADPTARMYGGRTPLGSAL 233 (282)
T ss_dssp -------------------------------CCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHH
T ss_pred -------------------------------CCCCCCCcCHHHHHHHcCCHHHHHHHHH-cCCCCcccccCCCCHHHHHH
Confidence 222 359999999999999999999999 69999999999999999999
Q ss_pred HcCccccccC
Q 043901 322 ENRQTSIYKL 331 (331)
Q Consensus 322 ~~~~~~iv~l 331 (331)
.+|+.+++++
T Consensus 234 ~~~~~~~v~~ 243 (282)
T 1oy3_D 234 LRPNPILARL 243 (282)
T ss_dssp TSSCHHHHHH
T ss_pred HcCCcHHHHH
Confidence 9999999863
|
| >3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=262.93 Aligned_cols=186 Identities=14% Similarity=0.098 Sum_probs=159.1
Q ss_pred ceec-cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCc
Q 043901 52 LYIR-LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGET 130 (331)
Q Consensus 52 ~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t 130 (331)
++.+ ..|.||||+|+..|+.+++++|++.|++ ++..| |.||||+|+..|+.+++++|+++|+++ +.++..|.|
T Consensus 24 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~---~~~d~~g~t 97 (285)
T 3kea_A 24 TFKADVHGHSASYYAIADNNVRLVCTLLNAGAL-KNLLE--NEFPLHQAATLEDTKIVKILLFSGLDD---SQFDDKGNT 97 (285)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGG-GSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCT---TCCCTTSCC
T ss_pred CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCC---CCcCCCCCc
Confidence 3455 8899999999999999999999999987 88774 999999999999999999999999998 999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCcccccccCCC-ccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCccccc
Q 043901 131 ILHSAISGEYFSIAFQIMRAYPDLVNSVNENG-LTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRS 209 (331)
Q Consensus 131 ~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g-~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~ 209 (331)
|||+|+..|+.+++++|++.|++ ++.++..| .||||+|+..++ .++++.|+..+.+...
T Consensus 98 ~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~~t~L~~A~~~~~-------~~~v~~Ll~~g~~~~~------------ 157 (285)
T 3kea_A 98 ALYYAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLND-------VSIVSYFLSEIPSTFD------------ 157 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCGG-GGGCSSSGGGSHHHHHHHTTC-------HHHHHHHHTTSCTTCC------------
T ss_pred HHHHHHHcCCHHHHHHHHhcCCC-CCccCCCCCCCHHHHHHHcCC-------HHHHHHHHhCCCcccc------------
Confidence 99999999999999999999998 99999999 899999999998 7999999887754321
Q ss_pred ccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhc
Q 043901 210 ISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKM 289 (331)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~ 289 (331)
...|.||||+|+..
T Consensus 158 ------------------------------------------------------------------~~~g~t~L~~A~~~ 171 (285)
T 3kea_A 158 ------------------------------------------------------------------LAILLSCIHITIKN 171 (285)
T ss_dssp ------------------------------------------------------------------CSTHHHHHHHHHHT
T ss_pred ------------------------------------------------------------------ccCCccHHHHHHHc
Confidence 11477777777777
Q ss_pred ChHHHHHHHHhhCCccccccccCCCcH-HHHHHHcCcccccc
Q 043901 290 GVAEMVKKILDTFPVAMQDMDSEKKNL-VLLAVENRQTSIYK 330 (331)
Q Consensus 290 g~~~~v~~Ll~~~~~~~~~~d~~g~t~-l~~A~~~~~~~iv~ 330 (331)
|+.+++++|++ .|++++.+|..|+|| ||+|+.+++.++++
T Consensus 172 g~~~~v~~Ll~-~gad~n~~~~~g~t~~L~~A~~~~~~~~v~ 212 (285)
T 3kea_A 172 GHVDMMILLLD-YMTSTNTNNSLLFIPDIKLAIDNKDIEMLQ 212 (285)
T ss_dssp TCHHHHHHHHH-HHHHTCTTCCCBCCTTHHHHHHHTCHHHHH
T ss_pred ChHHHHHHHHH-cCCCCCcccCCCCChHHHHHHHcCCHHHHH
Confidence 77777777777 477777777777776 77777777777665
|
| >1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=258.31 Aligned_cols=192 Identities=18% Similarity=0.162 Sum_probs=145.5
Q ss_pred ceec-cCCCchhhhhhccC-------------CHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCC
Q 043901 52 LYIR-LGGNHGRKYIKPLG-------------NEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQA 117 (331)
Q Consensus 52 ~~~~-~~g~t~Lh~A~~~g-------------~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~ 117 (331)
++.+ ..|.||||+|+..| +.+++++|++.|++..+..|..|.||||+|+..|+.+++++|++.|++
T Consensus 3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 82 (253)
T 1yyh_A 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD 82 (253)
T ss_dssp -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence 4556 88999999999977 899999999999984456689999999999999999999999999999
Q ss_pred ccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCc
Q 043901 118 KDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGE 197 (331)
Q Consensus 118 ~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~ 197 (331)
+ +.++..|.||||+|+..|+.+++++|++.++.+++.++..|.||||+|+..++ .++++.|+..+.+.
T Consensus 83 ~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~g~~~-- 150 (253)
T 1yyh_A 83 A---NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAV-------EGMLEDLINSHADV-- 150 (253)
T ss_dssp T---TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTC-------SSHHHHHHHTTCCT--
T ss_pred C---CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcCh-------HHHHHHHHHcCCCC--
Confidence 8 99999999999999999999999999999986699999999999999999998 78999998876542
Q ss_pred CCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCC
Q 043901 198 ANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSG 277 (331)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 277 (331)
+.++.
T Consensus 151 ---------------------------------------------------------------------------~~~d~ 155 (253)
T 1yyh_A 151 ---------------------------------------------------------------------------NAVDD 155 (253)
T ss_dssp ---------------------------------------------------------------------------TCBCT
T ss_pred ---------------------------------------------------------------------------CCcCC
Confidence 33466
Q ss_pred CCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHHHcCccccccC
Q 043901 278 RNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 278 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
.|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+.+|+.+++++
T Consensus 156 ~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~ 208 (253)
T 1yyh_A 156 LGKSALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKV 208 (253)
T ss_dssp TSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHCCCHHHHHH
Confidence 79999999999999999999999 699999999999999999999999998863
|
| >3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=243.48 Aligned_cols=189 Identities=13% Similarity=0.041 Sum_probs=173.3
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHH
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSA 135 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A 135 (331)
..+.||||.|+..|+.++++.|+..++.+++..|..|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~l~~A 79 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI---NLQNSISDSPYLYA 79 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHH
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHH
Confidence 457899999999999999999999998559999999999999999999999999999999999 99999999999999
Q ss_pred HhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCC
Q 043901 136 ISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKN 215 (331)
Q Consensus 136 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (331)
+..|+.+++++|++.+..+++..+..|.||||+|+..++ .++++.|+..+....
T Consensus 80 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~g~~~~------------------- 133 (201)
T 3hra_A 80 GAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGH-------IDNVKLLLEDGREDI------------------- 133 (201)
T ss_dssp HHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTC-------HHHHHHHHHHCCCCT-------------------
T ss_pred HHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCC-------HHHHHHHHHcCCCCc-------------------
Confidence 999999999999977766699999999999999999998 799999988762211
Q ss_pred CCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcCh----
Q 043901 216 DDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGV---- 291 (331)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~---- 291 (331)
+.++..|+||||+|+..|+
T Consensus 134 ---------------------------------------------------------~~~~~~g~t~L~~A~~~~~~~~~ 156 (201)
T 3hra_A 134 ---------------------------------------------------------DFQNDFGYTALIEAVGLREGNQL 156 (201)
T ss_dssp ---------------------------------------------------------TCCCTTSCCHHHHHHHSSCCSHH
T ss_pred ---------------------------------------------------------CCCCCCCCCHHHHHHHhccchhh
Confidence 3456689999999999987
Q ss_pred -HHHHHHHHhhCCccccccccCCCcHHHHHHHcCccccccC
Q 043901 292 -AEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 292 -~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
.+++++|++ .|++++.+|..|+||+|+|+++|+.+++++
T Consensus 157 ~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~ 196 (201)
T 3hra_A 157 YQDIVKLLME-NGADQSIKDNSGRTAMDYANQKGYTEISKI 196 (201)
T ss_dssp HHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHH-CCCCCCccCCCCCCHHHHHHHcCCHhHHHH
Confidence 999999999 699999999999999999999999999863
|
| >3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=249.69 Aligned_cols=190 Identities=14% Similarity=0.177 Sum_probs=176.1
Q ss_pred ceec-cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCc
Q 043901 52 LYIR-LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGET 130 (331)
Q Consensus 52 ~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t 130 (331)
++.+ .+|.||||+|+..|+.+++++|++.|++ ++..+..|.||||+|+..|+.+++++|++.|+++ +.++..|.|
T Consensus 4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t 79 (237)
T 3b7b_A 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN-IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV---DPKDAEGST 79 (237)
T ss_dssp CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC---CCCCTTSCC
T ss_pred cccccCCCCCHHHHHHHcCcHHHHHHHHHcCCC-cCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC---CCCCCCCCc
Confidence 4455 7899999999999999999999999998 9999999999999999999999999999999998 999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccc
Q 043901 131 ILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSI 210 (331)
Q Consensus 131 ~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~ 210 (331)
|||+|+..|+.+++++|++.+..+++..+..|.||||+|+..++ .++++.|+..+.+.
T Consensus 80 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~-------~~~~~~Ll~~g~~~--------------- 137 (237)
T 3b7b_A 80 CLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH-------VDLVKLLLSKGSDI--------------- 137 (237)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTC-------HHHHHHHHHTTCCT---------------
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCC-------HHHHHHHHHCCCCC---------------
Confidence 99999999999999999999965599999999999999999998 79999998876542
Q ss_pred cccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcC
Q 043901 211 SFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMG 290 (331)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g 290 (331)
+.++..|.||||+|+..|
T Consensus 138 --------------------------------------------------------------~~~~~~g~t~L~~A~~~~ 155 (237)
T 3b7b_A 138 --------------------------------------------------------------NIRDNEENICLHWAAFSG 155 (237)
T ss_dssp --------------------------------------------------------------TCCCTTSCCHHHHHHHHC
T ss_pred --------------------------------------------------------------CccCCCCCCHHHHHHHCC
Confidence 234567999999999999
Q ss_pred hHHHHHHHHhhCCccccccccCCCcHHHHHHHcCcccccc
Q 043901 291 VAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYK 330 (331)
Q Consensus 291 ~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~ 330 (331)
+.+++++|++ .|++++.+|..|+||||+|+++++.++++
T Consensus 156 ~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 194 (237)
T 3b7b_A 156 CVDIAEILLA-AKCDLHAVNIHGDSPLHIAARENRYDCVV 194 (237)
T ss_dssp CHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHhCCHhHHH
Confidence 9999999999 69999999999999999999999999886
|
| >1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=263.52 Aligned_cols=208 Identities=16% Similarity=0.113 Sum_probs=166.4
Q ss_pred hHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcCc
Q 043901 4 NSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKDR 82 (331)
Q Consensus 4 ~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~ 82 (331)
.+|+.|+..|+.+.++.+++.+.+ ++.. ..|.||||+|+..|+.+++++|++.|+
T Consensus 42 t~l~~A~~~g~~~~v~~Ll~~g~~------------------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga 97 (299)
T 1s70_B 42 AVFLAACSSGDTEEVLRLLERGAD------------------------INYANVDGLTALHQACIDDNVDMVKFLVENGA 97 (299)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHCCC------------------------TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTC
T ss_pred cHHHHHHHcCCHHHHHHHHHcCCC------------------------CcccCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence 568888888888888888776432 3444 678888888888888888888888887
Q ss_pred ccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccc------
Q 043901 83 ELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVN------ 156 (331)
Q Consensus 83 ~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~------ 156 (331)
+ ++..|..|.||||+|+..|+.+++++|+++|+++ +.++..|.||||+|+..++.+++++++.....+++
T Consensus 98 ~-~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~ 173 (299)
T 1s70_B 98 N-INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV---GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEE 173 (299)
T ss_dssp C-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred C-CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC---CCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhh
Confidence 7 8888888888888888888888888888888887 78888888888888888888888777654332222
Q ss_pred --------------------cccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCC
Q 043901 157 --------------------SVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKND 216 (331)
Q Consensus 157 --------------------~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (331)
..+..|.||||+|+..++ .++++.|+..+.++
T Consensus 174 ~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~-------~~~v~~Ll~~g~d~--------------------- 225 (299)
T 1s70_B 174 ERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGY-------TEVLKLLIQARYDV--------------------- 225 (299)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTC-------HHHHHHHHTTTCCT---------------------
T ss_pred hhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCc-------HHHHHHHHHcCCCC---------------------
Confidence 245678888888888887 67888777665432
Q ss_pred CccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHH
Q 043901 217 DKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVK 296 (331)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~ 296 (331)
+.+|..|.||||+|+..|+.++++
T Consensus 226 --------------------------------------------------------~~~d~~g~tpL~~A~~~~~~~~v~ 249 (299)
T 1s70_B 226 --------------------------------------------------------NIKDYDGWTPLHAAAHWGKEEACR 249 (299)
T ss_dssp --------------------------------------------------------TCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred --------------------------------------------------------CCcCCCCCcHHHHHHhcCCHHHHH
Confidence 345678999999999999999999
Q ss_pred HHHhhCCccccccccCCCcHHHHHHHcC
Q 043901 297 KILDTFPVAMQDMDSEKKNLVLLAVENR 324 (331)
Q Consensus 297 ~Ll~~~~~~~~~~d~~g~t~l~~A~~~~ 324 (331)
+|++ .|++++.+|..|+||+|+|++..
T Consensus 250 ~Ll~-~gad~~~~d~~g~t~l~~A~~~~ 276 (299)
T 1s70_B 250 ILVE-NLCDMEAVNKVGQTAFDVADEDI 276 (299)
T ss_dssp HHHH-TTCCTTCCCTTSCCTTTSCCSGG
T ss_pred HHHH-cCCCCCCcCCCCCCHHHHHHHHH
Confidence 9999 69999999999999999997644
|
| >1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-35 Score=248.12 Aligned_cols=186 Identities=16% Similarity=0.136 Sum_probs=171.5
Q ss_pred cCCCchhhhhhccCCHHHHHHHHh----cCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcH
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTAS----KDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETI 131 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~----~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~ 131 (331)
.+|.||||+|+..|+.+++++|++ .+.+ ++..|..|.||||+|+..|+.+++++|++.|+++ +.++..|.||
T Consensus 7 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~ 82 (241)
T 1k1a_A 7 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE-LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP---MALDRHGQTA 82 (241)
T ss_dssp CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCH
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCC-CCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc---cccCCCCCCH
Confidence 789999999999999999999997 5666 9999999999999999999999999999999998 8999999999
Q ss_pred HHHHHhcCCHHHHHHHHHhCCc---ccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccc
Q 043901 132 LHSAISGEYFSIAFQIMRAYPD---LVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNR 208 (331)
Q Consensus 132 Lh~A~~~~~~~~~~~Ll~~~~~---~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~ 208 (331)
||+|+..|+.+++++|++.+.. +++..+..|.||||+|+..++ .++++.|+..+.+..
T Consensus 83 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~-------~~~~~~Ll~~g~~~~------------ 143 (241)
T 1k1a_A 83 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC-------QETVQLLLERGADID------------ 143 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTC-------HHHHHHHHHTTCCTT------------
T ss_pred HHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCC-------HHHHHHHHHcCCCcc------------
Confidence 9999999999999999999972 388899999999999999998 799999988775533
Q ss_pred cccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccC-CCCchHHHHHH
Q 043901 209 SISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQS-GRNETAILIAA 287 (331)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~g~tpLh~A~ 287 (331)
..+ ..|.||||+|+
T Consensus 144 -----------------------------------------------------------------~~~~~~g~t~L~~A~ 158 (241)
T 1k1a_A 144 -----------------------------------------------------------------AVDIKSGRSPLIHAV 158 (241)
T ss_dssp -----------------------------------------------------------------CCCTTTCCCHHHHHH
T ss_pred -----------------------------------------------------------------cccccCCCcHHHHHH
Confidence 123 46999999999
Q ss_pred hcChHHHHHHHHhhCCccccccccCCCcHHHHHHHcCcccccc
Q 043901 288 KMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYK 330 (331)
Q Consensus 288 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~ 330 (331)
..|+.+++++|++ .|++++.+|..|+||||+|+.+|+.++++
T Consensus 159 ~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 200 (241)
T 1k1a_A 159 ENNSLSMVQLLLQ-HGANVNAQMYSGSSALHSASGRGLLPLVR 200 (241)
T ss_dssp HTTCHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHHTCHHHHH
T ss_pred HcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence 9999999999999 69999999999999999999999999886
|
| >2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=247.35 Aligned_cols=188 Identities=14% Similarity=0.068 Sum_probs=168.1
Q ss_pred CCCchhhhhhccCCHHHHHHHHhc-CcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCc--cccccccCCCCcHHH
Q 043901 57 GGNHGRKYIKPLGNEAMCHCTASK-DRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAK--DNRQCRKNNGETILH 133 (331)
Q Consensus 57 ~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~--~~~~~~~~~g~t~Lh 133 (331)
.|.||||+|+..|+.+++++|++. +.+ ++.+|..|.||||+|+..|+.+++++|++.|+++ ...+.+|..|.||||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~ 80 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCE-VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH 80 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCC-cccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence 489999999999999999999998 666 9999999999999999999999999999999875 122456779999999
Q ss_pred HHHhcCCHHHHHHHHHhCCcccccccC-------------CCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCC
Q 043901 134 SAISGEYFSIAFQIMRAYPDLVNSVNE-------------NGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEAND 200 (331)
Q Consensus 134 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~-------------~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 200 (331)
+|+..|+.+++++|++.|++ ++.++. .|.||||+|+..++ .++++.|+..+.++
T Consensus 81 ~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~ga~~----- 147 (232)
T 2rfa_A 81 IAVINQNVNLVRALLARGAS-VSARATGSVFHYRPHNLIYYGEHPLSFAACVGS-------EEIVRLLIEHGADI----- 147 (232)
T ss_dssp HHHHTTCHHHHHHHHHTTCC-TTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTC-------HHHHHHHHHTTCCT-----
T ss_pred HHHHcCCHHHHHHHHhCCCC-CCcccCCcceeecccccccCCCCHHHHHHHcCC-------HHHHHHHHHCCCCC-----
Confidence 99999999999999999988 777765 79999999999998 79999998876543
Q ss_pred CCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCc
Q 043901 201 EESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNE 280 (331)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 280 (331)
+.+|..|+
T Consensus 148 ------------------------------------------------------------------------~~~d~~g~ 155 (232)
T 2rfa_A 148 ------------------------------------------------------------------------RAQDSLGN 155 (232)
T ss_dssp ------------------------------------------------------------------------TCCCTTSC
T ss_pred ------------------------------------------------------------------------CCCCCCCC
Confidence 34566899
Q ss_pred hHHHHHHhcChHHHH----HHHHhhCCccc------cccccCCCcHHHHHHHcCccccccC
Q 043901 281 TAILIAAKMGVAEMV----KKILDTFPVAM------QDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 281 tpLh~A~~~g~~~~v----~~Ll~~~~~~~------~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
||||+|+..|+.+++ ++|++ .|+++ +.+|..|+||||+|+++|+.+++++
T Consensus 156 t~L~~A~~~~~~~~~~~i~~~Ll~-~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~ 215 (232)
T 2rfa_A 156 TVLHILILQPNKTFACQMYNLLLS-YDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQH 215 (232)
T ss_dssp CHHHHHHTCSCHHHHHHHHHHHHH-TTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHcCChHHHHHHHHHHHh-cCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHH
Confidence 999999999999988 99999 68887 6899999999999999999999863
|
| >1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=256.44 Aligned_cols=247 Identities=16% Similarity=0.087 Sum_probs=191.5
Q ss_pred HHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceeccCCCchhhhhhccCCHHHHHHHHhcCcccccc
Q 043901 8 KFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIRLGGNHGRKYIKPLGNEAMCHCTASKDRELISV 87 (331)
Q Consensus 8 ~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~ 87 (331)
.++..|..+.++.++............ .........|.||||.|+..|+.+++++|++.|++ ++.
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-~~~ 68 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVK--------------RKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGAD-INY 68 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCC--------------CSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCC-TTC
T ss_pred hHHHHHHHHHHHHHHcccccccccccc--------------CcccccccCCccHHHHHHHcCCHHHHHHHHHcCCC-Ccc
Confidence 467888889999999876653311100 01122225678999999999999999999999998 999
Q ss_pred cCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhH
Q 043901 88 RNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLH 167 (331)
Q Consensus 88 ~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~ 167 (331)
.|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|+++|++ ++..+..|.||||
T Consensus 69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~---~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~l~ 144 (299)
T 1s70_B 69 ANVDGLTALHQACIDDNVDMVKFLVENGANI---NQPDNEGWIPLHAAASCGYLDIAEYLISQGAH-VGAVNSEGDTPLD 144 (299)
T ss_dssp BCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC-CCCcCCCCCCHHH
Confidence 9999999999999999999999999999998 99999999999999999999999999999998 9999999999999
Q ss_pred HHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhcc
Q 043901 168 ILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGL 247 (331)
Q Consensus 168 ~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~ 247 (331)
+|+..++ .++++.++........ .... ............++. .+.
T Consensus 145 ~A~~~~~-------~~~~~~ll~~~~~~~~--------------------------~~~~-~~~~~~~~~~~~~l~-~~~ 189 (299)
T 1s70_B 145 IAEEEAM-------EELLQNEVNRQGVDIE--------------------------AARK-EEERIMLRDARQWLN-SGH 189 (299)
T ss_dssp HCCSHHH-------HHHHHHHHHHHTCCHH--------------------------HHHH-HHHHHHHHHHHHHHH-HTC
T ss_pred HHHhcch-------HHHHHHHHhhcCCCch--------------------------hhhh-hhhhHHHHHHHHHHh-ccC
Confidence 9999887 6777776654321110 0000 000000000000000 010
Q ss_pred CCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHHHcCccc
Q 043901 248 GLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTS 327 (331)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~ 327 (331)
... ...+..|.||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+.+|+.+
T Consensus 190 ~~~----------------------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~d~~~~d~~g~tpL~~A~~~~~~~ 246 (299)
T 1s70_B 190 IND----------------------VRHAKSGGTALHVAAAKGYTEVLKLLIQ-ARYDVNIKDYDGWTPLHAAAHWGKEE 246 (299)
T ss_dssp CCC----------------------CCCTTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred cch----------------------hhhcCCCCCHHHHHHHCCcHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHhcCCHH
Confidence 000 2346689999999999999999999999 79999999999999999999999999
Q ss_pred cccC
Q 043901 328 IYKL 331 (331)
Q Consensus 328 iv~l 331 (331)
++++
T Consensus 247 ~v~~ 250 (299)
T 1s70_B 247 ACRI 250 (299)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8863
|
| >2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-35 Score=245.17 Aligned_cols=187 Identities=16% Similarity=0.100 Sum_probs=168.3
Q ss_pred CCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCcccccc-ccCCCCcHHHHHH
Q 043901 58 GNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQC-RKNNGETILHSAI 136 (331)
Q Consensus 58 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~-~~~~g~t~Lh~A~ 136 (331)
|.||||+|+..|+.+++++|++.++...+..|..|.||||+|+..|+.+++++|++.|+++ +++. .+..|.||||+|+
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~~~~g~t~L~~A~ 80 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV-NLDDYPDDSGWTPFHIAC 80 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTC-CGGGCCCTTSCCHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccc-cccccCCCCCCCHHHHHH
Confidence 7899999999999999999999999866779999999999999999999999999999544 2256 8899999999999
Q ss_pred hcCCHHHHHHHHHhC--CcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccC
Q 043901 137 SGEYFSIAFQIMRAY--PDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSK 214 (331)
Q Consensus 137 ~~~~~~~~~~Ll~~~--~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (331)
..|+.+++++|++.| .+ ++..+..|.||||+|+..++ .++++.|+..+.+.
T Consensus 81 ~~~~~~~~~~Ll~~g~~~~-~~~~~~~g~t~L~~A~~~~~-------~~~~~~Ll~~g~~~------------------- 133 (228)
T 2dzn_A 81 SVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKW-------FEVSQFLIENGASV------------------- 133 (228)
T ss_dssp HHCCHHHHHHHHSSSSCCC-TTCCCTTCCCHHHHHHHTTC-------HHHHHHHHHTTCCS-------------------
T ss_pred HcCCHHHHHHHHhCCCCcc-cccCCcCCCCHHHHHHHcCC-------HhHHHHHHHcCCCc-------------------
Confidence 999999999999998 55 89999999999999999998 79999998876543
Q ss_pred CCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHH
Q 043901 215 NDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEM 294 (331)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~ 294 (331)
+.++..|.||||+|+..|+.++
T Consensus 134 ----------------------------------------------------------~~~~~~g~t~L~~A~~~~~~~~ 155 (228)
T 2dzn_A 134 ----------------------------------------------------------RIKDKFNQIPLHRAASVGSLKL 155 (228)
T ss_dssp ----------------------------------------------------------CCCCTTSCCHHHHHHHTTCHHH
T ss_pred ----------------------------------------------------------cccCCCCCCHHHHHHHcCCHHH
Confidence 2346679999999999999999
Q ss_pred HHHHHhhCCccccccccCCCcHHHHHHHcCcccccc
Q 043901 295 VKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYK 330 (331)
Q Consensus 295 v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~ 330 (331)
+++|++..+++++.+|..|+||||+|+..|+.++++
T Consensus 156 v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~ 191 (228)
T 2dzn_A 156 IELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAV 191 (228)
T ss_dssp HHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHH
Confidence 999999433999999999999999999999999886
|
| >3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-35 Score=261.30 Aligned_cols=248 Identities=15% Similarity=0.067 Sum_probs=195.7
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHH
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSA 135 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A 135 (331)
..|.|+||.|+..|+.+.++.|+......++..|..|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|
T Consensus 22 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A 98 (351)
T 3utm_A 22 EYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV---HAKDKGGLVPLHNA 98 (351)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHH
T ss_pred cccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CccCCCCCcHHHHH
Confidence 678899999999999999999998755559999999999999999999999999999999998 99999999999999
Q ss_pred HhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCc-CCCCCCCcccccccccC
Q 043901 136 ISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGE-ANDEESPECNRSISFSK 214 (331)
Q Consensus 136 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~~~~~~~~~~~~~~~ 214 (331)
+..|+.+++++|++.|++ ++..|..|.||||+|+..++ .++++.|+..+.+... +..+.+|.+. +...
T Consensus 99 ~~~g~~~iv~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~g~~~~~~~~~g~~~l~~---a~~~ 167 (351)
T 3utm_A 99 CSYGHYEVTELLLKHGAC-VNAMDLWQFTPLHEAASKNR-------VEVCSLLLSHGADPTLVNCHGKSAVDM---APTP 167 (351)
T ss_dssp HHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTC-------HHHHHHHHHTTCCTTCCCTTSCCHHHH---CSSH
T ss_pred HHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCC-------HHHHHHHHHcCCCCccccCCCCcchHH---Hhhh
Confidence 999999999999999998 99999999999999999999 8999999998877653 3344444433 1100
Q ss_pred CCCccCCCCCcchhhHHHH-------HHH-------HHHhchhhh-------ccCCccchhhhhhhh---chhhHHHHHh
Q 043901 215 NDDKCGQFFPPNYAACFLF-------FWL-------LMKALPIVL-------GLGLKNFKISIIPYI---KKVQGLKFME 270 (331)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~-------~~~-------l~~~~l~~~-------g~~~~~~~~~~~~~~---~~~~~~~~l~ 270 (331)
.......+ ... .+...+... ..+.+ +++.++.. +..+.+++|.
T Consensus 168 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t--~L~~A~~~~~~~~~~~~~~Ll 234 (351)
T 3utm_A 168 -----------ELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHET--ALHCAVASLHPKRKQVAELLL 234 (351)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCC--HHHHHHHCCSTTHHHHHHHHH
T ss_pred -----------hhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCC--HHHHHHHHhCccHHHHHHHHH
Confidence 00000000 000 000000000 11222 34444444 4456677777
Q ss_pred hh----hccCCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHHHcCccccccC
Q 043901 271 KK----DQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 271 ~~----~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
+. +.++..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+.+|+.++|++
T Consensus 235 ~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~ 298 (351)
T 3utm_A 235 RKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHK-HGAKMNALDSLGQTALHRAALAGHLQTCRL 298 (351)
T ss_dssp HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred HcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCcHHHHHH
Confidence 65 6678899999999999999999999999 799999999999999999999999999863
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-35 Score=250.26 Aligned_cols=213 Identities=15% Similarity=0.091 Sum_probs=175.8
Q ss_pred CCCchhhhhhccCCHHHHHHHHhcCccccccc-CCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHH
Q 043901 57 GGNHGRKYIKPLGNEAMCHCTASKDRELISVR-NNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSA 135 (331)
Q Consensus 57 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~-d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A 135 (331)
.|.||||.|+..|+.+++++|++.+++ ++.. +..|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A 79 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGGAN-VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP---VLRKKNGATPFLLA 79 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCC-cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC---cccCCCCCCHHHHH
Confidence 578999999999999999999999988 8877 788999999999999999999999999998 99999999999999
Q ss_pred HhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCc----------CCCCCCCc
Q 043901 136 ISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGE----------ANDEESPE 205 (331)
Q Consensus 136 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~~~~~~ 205 (331)
+..|+.+++++|++.|++ ++.+|..|.||||+|+..++. ..++.+ +-........ ...+.+|+
T Consensus 80 ~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~----~~~~~L--l~~g~~~~~~~~~~~~~~~~~~~g~t~L 152 (285)
T 1wdy_A 80 AIAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKV----KALKFL--YKRGANVNLRRKTKEDQERLRKGGATAL 152 (285)
T ss_dssp HHHTCHHHHHHHHHTTCC-TTCBCTTCCBHHHHHHHTTCH----HHHHHH--HHTTCCTTCCCCCCHHHHHTTCCCCCHH
T ss_pred HHcCCHHHHHHHHHcCCC-CCccCcccCCHHHHHHHhCCH----HHHHHH--HHhCCCcccccccHHHHHhhccCCCcHH
Confidence 999999999999999998 999999999999999999874 112221 2111111111 22333443
Q ss_pred ccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhh-----hccCCCCc
Q 043901 206 CNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKK-----DQQSGRNE 280 (331)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~g~ 280 (331)
+ .++..+..+.+++|.+. +.++..|.
T Consensus 153 ~-------------------------------------------------~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~ 183 (285)
T 1wdy_A 153 M-------------------------------------------------DAAEKGHVEVLKILLDEMGADVNACDNMGR 183 (285)
T ss_dssp H-------------------------------------------------HHHHHTCHHHHHHHHHTSCCCTTCCCTTSC
T ss_pred H-------------------------------------------------HHHHcCCHHHHHHHHHhcCCCCCccCCCCC
Confidence 3 23344445555555442 56678899
Q ss_pred hHHHHHHhcCh----HHHHHHHHhhCCccccccccCCCcHHHHHHHcCcccccc
Q 043901 281 TAILIAAKMGV----AEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYK 330 (331)
Q Consensus 281 tpLh~A~~~g~----~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~ 330 (331)
||||+|+..|+ .+++++|++ .|++++.+|..|+||||+|+++|+.++++
T Consensus 184 t~l~~a~~~~~~~~~~~i~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 236 (285)
T 1wdy_A 184 NALIHALLSSDDSDVEAITHLLLD-HGADVNVRGERGKTPLILAVEKKHLGLVQ 236 (285)
T ss_dssp CHHHHHHHCSCTTTHHHHHHHHHH-TTCCSSCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHccccchHHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHHcCCHHHHH
Confidence 99999999999 999999999 79999999999999999999999999886
|
| >4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-34 Score=254.76 Aligned_cols=241 Identities=16% Similarity=0.101 Sum_probs=188.5
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccH-----------HHH-HHhhhCCCcceec-cCCCchhhhhhccC
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQ-----------LYT-LQQQLGKPILYIR-LGGNHGRKYIKPLG 69 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~-----------~v~-Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g 69 (331)
..+||.|+..|+.+.++.|++.+.... .....+.++ .+. +++.+ .+ ++.. ..|.||||+|+..|
T Consensus 60 ~TpLh~A~~~g~~~iv~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~d~~g~t~l~~A~~~~ 136 (337)
T 4g8k_A 60 WTPLHNAVQMSREDIVELLLRHGADPV-LRKKNGATPFILAAIAGSVKLLKLFLSKG-AD-VNECDFYGFTAFMEAAVYG 136 (337)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHTTT-CC-TTCBCTTCCBHHHHHHHTT
T ss_pred cCHHHHHHHcCCHHHHHHHHHcCCchh-hhccCCCchhHHHHhcccchhhHHhhhcc-ch-hhhhccCCCCHHHHHHHcC
Confidence 579999999999999999998766533 222233444 555 66666 33 5556 89999999999999
Q ss_pred CHHHHHHHHhcCcccccc----------cCCCCCcHHHHHHhcCCHHHHHHHHh-cCCCccccccccCCCCcHHHHHHhc
Q 043901 70 NEAMCHCTASKDRELISV----------RNNDSETPLFLAALHGNMDAFLCLRS-FNQAKDNRQCRKNNGETILHSAISG 138 (331)
Q Consensus 70 ~~~~v~~Ll~~~~~~~~~----------~d~~g~tpLh~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~~~g~t~Lh~A~~~ 138 (331)
+.+++++|++.|++ ++. .+..|.||||+|+..|+.+++++|++ .|+++ +.++..|.||+|.++..
T Consensus 137 ~~~~~~~ll~~ga~-~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~---n~~d~~g~t~l~~~~~~ 212 (337)
T 4g8k_A 137 KVKALKFLYKRGAN-VNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV---NACDNMGRNALIHALLS 212 (337)
T ss_dssp CHHHHHHHHHTTCC-TTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCT---TCCCTTSCCHHHHHHHH
T ss_pred cHHHHHHHHHcCCC-cchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCc---CccCCCCCcHHHHHHHH
Confidence 99999999999886 554 35568999999999999999999996 58988 99999999999987765
Q ss_pred CC----HHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhh-hcccCc-CCCCCCCcccccccc
Q 043901 139 EY----FSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHY-YKTKGE-ANDEESPECNRSISF 212 (331)
Q Consensus 139 ~~----~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~-~~~~~~-~~~~~~~~~~~~~~~ 212 (331)
+. .+++++|+++|++ ++.+|..|+||||+|+..++ .++++.|+.. +.++.. +..+.+|+|.
T Consensus 213 ~~~~~~~~i~~lLl~~gad-~n~~d~~g~t~L~~a~~~~~-------~~~v~~Ll~~~~~~vn~~d~~G~TpL~~----- 279 (337)
T 4g8k_A 213 SDDSDVEAITHLLLDHGAD-VNVRGERGKTPLILAVEKKH-------LGLVQRLLEQEHIEINDTDSDGKTALLL----- 279 (337)
T ss_dssp SCTTTHHHHHHHHHHTTCC-TTCCCGGGCCHHHHHHHTTC-------HHHHHHHHTSTTCCTTCBCTTSCBHHHH-----
T ss_pred cCcccHHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhhh-------hHHHHHHHHhcCCcccCcCCCCCCHHHH-----
Confidence 43 4688999999998 99999999999999999998 7899988864 444432 4455555443
Q ss_pred cCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChH
Q 043901 213 SKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVA 292 (331)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~ 292 (331)
++..+..+.+++|.+. --|.++.||||+|+.+|+.
T Consensus 280 --------------------------------------------A~~~g~~~iv~~Ll~~-GAd~n~~~~L~~A~~~~~~ 314 (337)
T 4g8k_A 280 --------------------------------------------AVELKLKKIAELLCKR-GASTDCGDLVMTARRNYDH 314 (337)
T ss_dssp --------------------------------------------HHHTTCHHHHHHHHTT-SCSSTTCCHHHHHHHTTCH
T ss_pred --------------------------------------------HHHcCCHHHHHHHHHC-CCCCCCCCHHHHHHHcCCH
Confidence 3455555666666653 2244577899999999999
Q ss_pred HHHHHHHhhCCcccccc
Q 043901 293 EMVKKILDTFPVAMQDM 309 (331)
Q Consensus 293 ~~v~~Ll~~~~~~~~~~ 309 (331)
++|++||+ +|+++|..
T Consensus 315 ~iv~~Ll~-~GA~~d~~ 330 (337)
T 4g8k_A 315 SLVKVLLS-HGAKEDFH 330 (337)
T ss_dssp HHHHHHHH-TTCCC---
T ss_pred HHHHHHHH-CcCCCCCC
Confidence 99999999 79998863
|
| >3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-35 Score=251.40 Aligned_cols=214 Identities=15% Similarity=0.094 Sum_probs=162.5
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcC----------cccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCcccccccc
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKD----------RELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRK 125 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~----------~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~ 125 (331)
..|.|+||+|+..|+.+.+..++..+ ...++..|..|.||||+|+..|+.+++++|++.|+++ +.+|
T Consensus 13 ~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~---~~~~ 89 (285)
T 3d9h_A 13 GLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV---NIIT 89 (285)
T ss_dssp -----------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCS---CEEC
T ss_pred hHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCC---CCcC
Confidence 67999999999999977666655432 1226678999999999999999999999999999998 9999
Q ss_pred CCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCc
Q 043901 126 NNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPE 205 (331)
Q Consensus 126 ~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~ 205 (331)
..|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..++ .++++.|+..+.+......+.+|+
T Consensus 90 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~g~~~~~~~~g~t~L 161 (285)
T 3d9h_A 90 ADHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLFNACVSGS-------WDCVNLLLQHGASVQPESDLASPI 161 (285)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTC-------HHHHHHHHHTTCCSSCSCTTSCHH
T ss_pred CCCCCHHHHHHHCCcHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCH-------HHHHHHHHHCCCCCCCCCCCCCHH
Confidence 9999999999999999999999999988 99999999999999999998 799999999988776555555554
Q ss_pred ccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhh----hccCCCCch
Q 043901 206 CNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKK----DQQSGRNET 281 (331)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~g~t 281 (331)
+. ++..+..+.+++|.+. +.++..|.|
T Consensus 162 ~~-------------------------------------------------A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t 192 (285)
T 3d9h_A 162 HE-------------------------------------------------AARRGHVECVNSLIAYGGNIDHKISHLGT 192 (285)
T ss_dssp HH-------------------------------------------------HHHHTCHHHHHHHHHTTCCTTCCBTTTBC
T ss_pred HH-------------------------------------------------HHHcCCHHHHHHHHHCCCCCCCcCCCCCC
Confidence 43 2344444445555443 567889999
Q ss_pred HHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHHHcCccccccC
Q 043901 282 AILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 282 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
|||+|+..|+.+++++|++ .|++++. |..|+||||+|+.+++.+++++
T Consensus 193 ~L~~A~~~~~~~~v~~Ll~-~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~ 240 (285)
T 3d9h_A 193 PLYLACENQQRACVKKLLE-SGADVNQ-GKGQDSPLHAVVRTASEELACL 240 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHH-TTCCTTC-CBTTBCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHH-CCCCCCC-CCCCCCHHHHHHHcCCHHHHHH
Confidence 9999999999999999999 6999994 8999999999999999998863
|
| >3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=242.08 Aligned_cols=186 Identities=23% Similarity=0.189 Sum_probs=172.9
Q ss_pred CCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHH
Q 043901 57 GGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAI 136 (331)
Q Consensus 57 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~ 136 (331)
.+.||||.|+..|+.+++++|++.++..++..|..|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|+
T Consensus 5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~ 81 (231)
T 3aji_A 5 VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV---NDKDDAGWSPLHIAA 81 (231)
T ss_dssp CSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS---CCCCTTSCCHHHHHH
T ss_pred cccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC---CCcCCCCCCHHHHHH
Confidence 57899999999999999999999988778999999999999999999999999999999998 999999999999999
Q ss_pred hcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCC
Q 043901 137 SGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKND 216 (331)
Q Consensus 137 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (331)
..|+.+++++|++.|++ ++.++..|.||||+|+..++ .++++.|+..+.+.
T Consensus 82 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~-------~~~~~~Ll~~g~~~--------------------- 132 (231)
T 3aji_A 82 SAGXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNR-------HEIAVMLLEGGANP--------------------- 132 (231)
T ss_dssp HHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTC-------HHHHHHHHHTTCCT---------------------
T ss_pred HcCHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCC-------HHHHHHHHHcCCCC---------------------
Confidence 99999999999999998 99999999999999999998 78999988766442
Q ss_pred CccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHH
Q 043901 217 DKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVK 296 (331)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~ 296 (331)
+.++..|.||||+|+..|+.++++
T Consensus 133 --------------------------------------------------------~~~~~~g~t~L~~A~~~~~~~~v~ 156 (231)
T 3aji_A 133 --------------------------------------------------------DAKDHYDATAMHRAAAKGNLKMVH 156 (231)
T ss_dssp --------------------------------------------------------TCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred --------------------------------------------------------CCcCCCCCcHHHHHHHcCCHHHHH
Confidence 234567999999999999999999
Q ss_pred HHHhhCCccccccccCCCcHHHHHHHcCccccccC
Q 043901 297 KILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 297 ~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
+|++ .|++++.+|..|+||||+|+.+++.+++++
T Consensus 157 ~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 190 (231)
T 3aji_A 157 ILLF-YKASTNIQDTEGNTPLHLACDEERVEEAKF 190 (231)
T ss_dssp HHHH-TTCCSCCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHh-cCCCccccCCCCCCHHHHHHHCCCHHHHHH
Confidence 9999 799999999999999999999999998863
|
| >1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-36 Score=251.67 Aligned_cols=187 Identities=18% Similarity=0.188 Sum_probs=158.3
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCcc---cccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHH
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDRE---LISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETIL 132 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~---~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~L 132 (331)
.+|.||||+|+..|+.+++++|++.+.. .++..|..|.||||+|+..|+.+++++|++.|+++ +.++..|.|||
T Consensus 6 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L 82 (236)
T 1ikn_D 6 EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP---ELRDFRGNTPL 82 (236)
T ss_dssp -CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS---CCCCTTCCCHH
T ss_pred CCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CCcCCCCCCHH
Confidence 6789999999999999999999987763 38888999999999999999999999999999988 88899999999
Q ss_pred HHHHhcCCHHHHHHHHHhCCc-----ccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCccc
Q 043901 133 HSAISGEYFSIAFQIMRAYPD-----LVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECN 207 (331)
Q Consensus 133 h~A~~~~~~~~~~~Ll~~~~~-----~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~ 207 (331)
|+|+..|+.+++++|++.+.. .++..+..|.||||+|+..++ .++++.|+..+.+..
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~g~~~~----------- 144 (236)
T 1ikn_D 83 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGY-------LGIVELLVSLGADVN----------- 144 (236)
T ss_dssp HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTC-------HHHHHHHHHHTCCTT-----------
T ss_pred HHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCC-------HHHHHHHHHcCCCCC-----------
Confidence 999999999999999998753 256778889999999999998 788888888775533
Q ss_pred ccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCC-CCchHHHHH
Q 043901 208 RSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSG-RNETAILIA 286 (331)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~g~tpLh~A 286 (331)
.++. .|.||||+|
T Consensus 145 ------------------------------------------------------------------~~~~~~g~tpL~~A 158 (236)
T 1ikn_D 145 ------------------------------------------------------------------AQEPCNGRTALHLA 158 (236)
T ss_dssp ------------------------------------------------------------------CCCTTTCCCHHHHH
T ss_pred ------------------------------------------------------------------CCCCCCCCCHHHHH
Confidence 2343 689999999
Q ss_pred HhcChHHHHHHHHhhCCccccccccCCCcHHHHHHHcCcccccc
Q 043901 287 AKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYK 330 (331)
Q Consensus 287 ~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~ 330 (331)
+..|+.+++++|++ .|++++.+|..|+||+|+|+.+++.++++
T Consensus 159 ~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~~~ 201 (236)
T 1ikn_D 159 VDLQNPDLVSLLLK-CGADVNRVTYQGYSPYQLTWGRPSTRIQQ 201 (236)
T ss_dssp HHTTCHHHHHHHHT-TTCCSCCCCTTCCCGGGGCTTSSCHHHHH
T ss_pred HHcCCHHHHHHHHH-cCCCCCcccCCCCCHHHHHHccCchHHHH
Confidence 99999999999998 69999999999999999999999888876
|
| >2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-36 Score=267.99 Aligned_cols=239 Identities=14% Similarity=0.183 Sum_probs=180.4
Q ss_pred HHHHHhcCCHHHHHHHHHcCCccccccccCCccH----------HHH-HHhhhCCCcceec-cCCCchhhhhhccCCHHH
Q 043901 6 LSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQ----------LYT-LQQQLGKPILYIR-LGGNHGRKYIKPLGNEAM 73 (331)
Q Consensus 6 L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~----------~v~-Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~ 73 (331)
+..+...|+++.+..++...+ ...+.|+ +++ |+.. ++.... ..|+||||+|+..|+.++
T Consensus 70 ~~~~~~~g~~~~~~~~~~~~~------~~~g~t~L~~Aa~~~~~~~~~L~~~---~~n~~d~~~g~t~Lh~Aa~~g~~~~ 140 (373)
T 2fo1_E 70 GNGNDFLGDFNHTNLQIPTEP------EPESPIKLHTEAAGSYAITEPITRE---SVNIIDPRHNRTVLHWIASNSSAEK 140 (373)
T ss_dssp ------------------------------CCCHHHHHHHSSSCCCSCCSTT---TTTTCCCSSCCCHHHHHHCTTCCSC
T ss_pred CCCCCccccccccccccccCC------CCCCccHHHHHhcCCchHHHHhccc---cccccCCcCCCCHHHHHHHCCCHHH
Confidence 345666788877766655432 2233444 455 4432 222333 689999999999999998
Q ss_pred HHHHH--------hcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHH
Q 043901 74 CHCTA--------SKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAF 145 (331)
Q Consensus 74 v~~Ll--------~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~ 145 (331)
+++|+ +.|++ +|.+|..|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|+..|+.++++
T Consensus 141 v~~Ll~~~~~~ll~~ga~-vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~---~~~~~~g~t~L~~A~~~g~~~~v~ 216 (373)
T 2fo1_E 141 SEDLIVHEAKECIAAGAD-VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP---TIYNKSERSALHQAAANRDFGMMV 216 (373)
T ss_dssp CTTHHHHHHHHHHHTCCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS---CCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcCCC-CcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCC---cccCCCCCCHHHHHHHCCCHHHHH
Confidence 88887 77887 9999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHhC---CcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCC
Q 043901 146 QIMRAY---PDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQF 222 (331)
Q Consensus 146 ~Ll~~~---~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (331)
+|++.+ .+ ++..|..|.||||+|+..+. ....++++.|+..+.+.......
T Consensus 217 ~Ll~~~~~~~~-~~~~d~~g~t~L~~A~~~~~----~~~~~~v~~Ll~~g~~~~~~~~~--------------------- 270 (373)
T 2fo1_E 217 YMLNSTKLKGD-IEELDRNGMTALMIVAHNEG----RDQVASAKLLVEKGAKVDYDGAA--------------------- 270 (373)
T ss_dssp HHTTSHHHHHT-TSCCCTTSCCHHHHHHHSCS----TTHHHHHHHHHHHTCCSSCCSGG---------------------
T ss_pred HHHhcCccccC-hhhcCCCCCCHHHHHHHhCC----cchHHHHHHHHHCCCCccccccc---------------------
Confidence 999987 45 89999999999999999872 01178899998888665420000
Q ss_pred CCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHHhhC
Q 043901 223 FPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDTF 302 (331)
Q Consensus 223 ~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~ 302 (331)
.. +.++..|.||||+|+..|+.++|++|++..
T Consensus 271 ------------------------------------~~------------~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 302 (373)
T 2fo1_E 271 ------------------------------------RK------------DSEKYKGRTALHYAAQVSNMPIVKYLVGEK 302 (373)
T ss_dssp ------------------------------------GT------------SSSSCCCCCTHHHHHSSCCHHHHHHHHHHS
T ss_pred ------------------------------------cc------------CcccccCCCHHHHHHHhCCHHHHHHHHHhc
Confidence 00 345678999999999999999999999976
Q ss_pred CccccccccCCCcHHHHHHHcCccccccC
Q 043901 303 PVAMQDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 303 ~~~~~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
+++++.+|..|+||||+|+.+|+.++|++
T Consensus 303 ~~~~n~~d~~g~TpL~~A~~~g~~~iv~~ 331 (373)
T 2fo1_E 303 GSNKDKQDEDGKTPIMLAAQEGRIEVVMY 331 (373)
T ss_dssp CCCTTCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred CCCccCcCCCCCCHHHHHHHcCCHHHHHH
Confidence 79999999999999999999999999863
|
| >2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-35 Score=249.36 Aligned_cols=188 Identities=13% Similarity=0.122 Sum_probs=165.5
Q ss_pred CCCchhhhhhccCCHH----HHHHHHhcCcccccc----cCCCCCcHHHHHHhc---CCHHHHHHHHhcCCCccccc---
Q 043901 57 GGNHGRKYIKPLGNEA----MCHCTASKDRELISV----RNNDSETPLFLAALH---GNMDAFLCLRSFNQAKDNRQ--- 122 (331)
Q Consensus 57 ~g~t~Lh~A~~~g~~~----~v~~Ll~~~~~~~~~----~d~~g~tpLh~A~~~---~~~~~~~~Ll~~g~~~~~~~--- 122 (331)
.|+||||+|+..|+.+ ++++|++.+.+ ++. .|..|.||||+|+.. |+.+++++|++.|+++....
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~-i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~ 79 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKY-LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLV 79 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCC-TTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGG
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCC-cccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhc
Confidence 4889999999999997 55777778887 888 899999999999999 99999999999998761111
Q ss_pred -----cccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCC-------------CccHhHHHhcCCCcccccccchh
Q 043901 123 -----CRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNEN-------------GLTRLHILASKPTAFKRGSRLGL 184 (331)
Q Consensus 123 -----~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-------------g~t~l~~A~~~~~~~~~~~~~~~ 184 (331)
.+|..|.||||+|+..|+.+++++|++.|++ ++.++.. |.||||+|+..++ .++
T Consensus 80 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~-------~~~ 151 (256)
T 2etb_A 80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD-VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ-------WDV 151 (256)
T ss_dssp GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTC-------HHH
T ss_pred ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccccccccccccccccCCCCHHHHHHHcCC-------HHH
Confidence 2347899999999999999999999999998 9988876 9999999999998 799
Q ss_pred HHHHHh---hhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhc
Q 043901 185 FDRIIH---YYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIK 261 (331)
Q Consensus 185 ~~~li~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~ 261 (331)
++.|+. .+.++
T Consensus 152 v~~Ll~~~~~ga~~------------------------------------------------------------------ 165 (256)
T 2etb_A 152 VTYLLENPHQPASL------------------------------------------------------------------ 165 (256)
T ss_dssp HHHHHHCSSCCCCT------------------------------------------------------------------
T ss_pred HHHHHhccccCCCc------------------------------------------------------------------
Confidence 999988 55432
Q ss_pred hhhHHHHHhhhhccCCCCchHHHHHHh--cChHH-------HHHHHHhhCCccc-------cccccCCCcHHHHHHHcCc
Q 043901 262 KVQGLKFMEKKDQQSGRNETAILIAAK--MGVAE-------MVKKILDTFPVAM-------QDMDSEKKNLVLLAVENRQ 325 (331)
Q Consensus 262 ~~~~~~~l~~~~~~~~~g~tpLh~A~~--~g~~~-------~v~~Ll~~~~~~~-------~~~d~~g~t~l~~A~~~~~ 325 (331)
+.+|..|+||||+|+. .++.+ ++++|++ .|+++ +.+|..|+||||+|++.|+
T Consensus 166 -----------n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~-~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~ 233 (256)
T 2etb_A 166 -----------EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQ-MGARLCPTVQLEEISNHQGLTPLKLAAKEGK 233 (256)
T ss_dssp -----------TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHHHHSTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred -----------CccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHH-cCCCcccccccccccCCCCCCHHHHHHHhCC
Confidence 3456789999999999 88888 9999999 69999 9999999999999999999
Q ss_pred cccccC
Q 043901 326 TSIYKL 331 (331)
Q Consensus 326 ~~iv~l 331 (331)
.+++++
T Consensus 234 ~~~v~~ 239 (256)
T 2etb_A 234 IEIFRH 239 (256)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999863
|
| >4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-34 Score=226.23 Aligned_cols=159 Identities=19% Similarity=0.194 Sum_probs=144.3
Q ss_pred chhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcC
Q 043901 60 HGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGE 139 (331)
Q Consensus 60 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~ 139 (331)
++|+.||+.|+.++|++|++.|++ +|.+|..|.||||+|+..++.+++++|++.|+++ +.+|..|.||||+|+..|
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gad-vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~---~~~d~~g~TpLh~A~~~g 81 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGAD-VNASDSDGRTPLHHAAENGHKEVVKLLISKGADV---NAKDSDGRTPLHHAAENG 81 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch---hhhccCCCCHHHHHHHcC
Confidence 479999999999999999999998 9999999999999999999999999999999999 999999999999999999
Q ss_pred CHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCcc
Q 043901 140 YFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKC 219 (331)
Q Consensus 140 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (331)
+.+++++|+++|++ ++.+|..|+||||+|+..++ .++++.|+..+.+.
T Consensus 82 ~~~~v~~Ll~~gad-vn~~d~~G~TpLh~A~~~g~-------~~~v~~Ll~~gad~------------------------ 129 (169)
T 4gpm_A 82 HKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGH-------KEVVKLLISKGADV------------------------ 129 (169)
T ss_dssp CHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTC-------HHHHHHHHHTTCCT------------------------
T ss_pred CHHHHHHHHHCcCC-CCCCCCCCCCHHHHHHHcCC-------HHHHHHHHHcCCCc------------------------
Confidence 99999999999998 99999999999999999999 79999998877553
Q ss_pred CCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHH
Q 043901 220 GQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKIL 299 (331)
Q Consensus 220 ~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll 299 (331)
+.+|..|+||||+|+..|+.+++++|+
T Consensus 130 -----------------------------------------------------~~~d~~G~TpL~~A~~~g~~~iv~~Ll 156 (169)
T 4gpm_A 130 -----------------------------------------------------NTSDSDGRTPLDLAREHGNEEVVKLLE 156 (169)
T ss_dssp -----------------------------------------------------TCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred -----------------------------------------------------cccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 345668999999999999999999999
Q ss_pred hhCCccccc
Q 043901 300 DTFPVAMQD 308 (331)
Q Consensus 300 ~~~~~~~~~ 308 (331)
+ .|++++.
T Consensus 157 ~-~GA~ie~ 164 (169)
T 4gpm_A 157 K-QGGWLEH 164 (169)
T ss_dssp T-C------
T ss_pred H-CCCCcCC
Confidence 9 7999864
|
| >3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-34 Score=247.09 Aligned_cols=219 Identities=13% Similarity=0.076 Sum_probs=183.0
Q ss_pred HHhcCCHHHHHHHHHcCCccccccccCCccH-----------HHH-HHhhhCCCcceeccCCCchhhhhhccCCHHHHHH
Q 043901 9 FAVRGQWDNIVQAYENNPMSREAKLTNLETQ-----------LYT-LQQQLGKPILYIRLGGNHGRKYIKPLGNEAMCHC 76 (331)
Q Consensus 9 a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~-----------~v~-Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~ 76 (331)
++..++.+.+++++.... .......+.|| +++ |++.+ .+ ++. .+|.||||+|+..|+.+++++
T Consensus 6 ~i~~~~~~~v~~lL~~~~--~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~-~~~-~~g~t~L~~A~~~g~~~~v~~ 80 (285)
T 3kea_A 6 RINTWKSKQLKSFLSSKD--TFKADVHGHSASYYAIADNNVRLVCTLLNAG-AL-KNL-LENEFPLHQAATLEDTKIVKI 80 (285)
T ss_dssp TGGGCCHHHHHHHHHSTT--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-GG-GSC-CTTCCHHHHHTTSSSCHHHHH
T ss_pred HHHhcCHHHHHHHHHhCC--CCccCCCCCCHHHHHHHcCCHHHHHHHHhCC-CC-CCC-CCCCCHHHHHHHcCCHHHHHH
Confidence 456677777788776542 23333444666 777 77777 22 222 369999999999999999999
Q ss_pred HHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCC-CcHHHHHHhcCCHHHHHHHHHhCCccc
Q 043901 77 TASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNG-ETILHSAISGEYFSIAFQIMRAYPDLV 155 (331)
Q Consensus 77 Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g-~t~Lh~A~~~~~~~~~~~Ll~~~~~~~ 155 (331)
|++.|++ ++.+|..|.||||+|+..|+.+++++|+++|+++ +.++..| .||||+|+..|+.+++++|++.|+. .
T Consensus 81 Ll~~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~---~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~-~ 155 (285)
T 3kea_A 81 LLFSGLD-DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL---MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS-T 155 (285)
T ss_dssp HHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGG---GGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCT-T
T ss_pred HHHCCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC---CccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCc-c
Confidence 9999998 9999999999999999999999999999999998 9999999 7999999999999999999999987 3
Q ss_pred ccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHH
Q 043901 156 NSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFW 235 (331)
Q Consensus 156 ~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (331)
... ..|.||||+|+..++ .++++.|+..+.+..
T Consensus 156 ~~~-~~g~t~L~~A~~~g~-------~~~v~~Ll~~gad~n--------------------------------------- 188 (285)
T 3kea_A 156 FDL-AILLSCIHITIKNGH-------VDMMILLLDYMTSTN--------------------------------------- 188 (285)
T ss_dssp CCC-STHHHHHHHHHHTTC-------HHHHHHHHHHHHHTC---------------------------------------
T ss_pred ccc-cCCccHHHHHHHcCh-------HHHHHHHHHcCCCCC---------------------------------------
Confidence 221 289999999999999 799999988876533
Q ss_pred HHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchH-HHHHHhcChHHHHHHHHhhCCccccccccCCC
Q 043901 236 LLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETA-ILIAAKMGVAEMVKKILDTFPVAMQDMDSEKK 314 (331)
Q Consensus 236 ~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tp-Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~ 314 (331)
.++..|+|| ||+|+..|+.+++++|++ .|++++.+|.
T Consensus 189 --------------------------------------~~~~~g~t~~L~~A~~~~~~~~v~~Ll~-~gad~~~~~~--- 226 (285)
T 3kea_A 189 --------------------------------------TNNSLLFIPDIKLAIDNKDIEMLQALFK-YDINIYSANL--- 226 (285)
T ss_dssp --------------------------------------TTCCCBCCTTHHHHHHHTCHHHHHHHTT-SCBCSTTTTG---
T ss_pred --------------------------------------cccCCCCChHHHHHHHcCCHHHHHHHHH-cCCCCCCCCh---
Confidence 346679998 999999999999999999 6999998883
Q ss_pred cHHHHHHHcCcccccc
Q 043901 315 NLVLLAVENRQTSIYK 330 (331)
Q Consensus 315 t~l~~A~~~~~~~iv~ 330 (331)
.|+..|+.++++
T Consensus 227 ----~a~~~~~~~iv~ 238 (285)
T 3kea_A 227 ----ENVLLDDAEIAK 238 (285)
T ss_dssp ----GGGTTTCHHHHH
T ss_pred ----hhhhcCCHHHHH
Confidence 556677877775
|
| >1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-35 Score=244.45 Aligned_cols=215 Identities=14% Similarity=0.082 Sum_probs=181.7
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcC
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKD 81 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 81 (331)
.++||.|+..|+.+.++.+++..+.. ...++.. ..|.||||+|+..|+.+++++|++.|
T Consensus 9 ~t~L~~A~~~g~~~~v~~Ll~~~~~~--------------------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 68 (236)
T 1ikn_D 9 DSFLHLAIIHEEKALTMEVIRQVKGD--------------------LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 68 (236)
T ss_dssp CCTTHHHHHTTCSSSSSCCCC-------------------------CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCC
T ss_pred CchhHHHHHcCChhHHHHHHHHhhcc--------------------HHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 46789999999887777776654321 1235666 88999999999999999999999999
Q ss_pred cccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCc---cccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccc
Q 043901 82 RELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAK---DNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSV 158 (331)
Q Consensus 82 ~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~---~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~ 158 (331)
++ ++.+|..|.||||+|+..|+.+++++|++.|++. ..++..+..|.||||+|+..|+.+++++|++.|++ ++.+
T Consensus 69 ~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~ 146 (236)
T 1ikn_D 69 CD-PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD-VNAQ 146 (236)
T ss_dssp CC-SCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC-TTCC
T ss_pred CC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCC
Confidence 98 9999999999999999999999999999999752 22477888999999999999999999999999998 9999
Q ss_pred cC-CCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHH
Q 043901 159 NE-NGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLL 237 (331)
Q Consensus 159 ~~-~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 237 (331)
+. .|.||||+|+..++ .++++.|+..+.+.
T Consensus 147 ~~~~g~tpL~~A~~~~~-------~~~v~~Ll~~ga~~------------------------------------------ 177 (236)
T 1ikn_D 147 EPCNGRTALHLAVDLQN-------PDLVSLLLKCGADV------------------------------------------ 177 (236)
T ss_dssp CTTTCCCHHHHHHHTTC-------HHHHHHHHTTTCCS------------------------------------------
T ss_pred CCCCCCCHHHHHHHcCC-------HHHHHHHHHcCCCC------------------------------------------
Confidence 87 99999999999998 79999998876543
Q ss_pred HHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHHhhCCcccc--ccccCCCc
Q 043901 238 MKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQ--DMDSEKKN 315 (331)
Q Consensus 238 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~--~~d~~g~t 315 (331)
+.++..|+||||+|+..|+.+++++|++ .|++.. .++..|.|
T Consensus 178 -----------------------------------~~~~~~g~tpl~~A~~~~~~~~~~~Ll~-~ga~~~~~~~~~~~~~ 221 (236)
T 1ikn_D 178 -----------------------------------NRVTYQGYSPYQLTWGRPSTRIQQQLGQ-LTLENLQMLPESEDEE 221 (236)
T ss_dssp -----------------------------------CCCCTTCCCGGGGCTTSSCHHHHHHHHT-TSCGGGSSCCCCCTTT
T ss_pred -----------------------------------CcccCCCCCHHHHHHccCchHHHHHHHH-cchhhhhcCCccchHH
Confidence 2346689999999999999999999999 688776 78999999
Q ss_pred HHHHHHHcC
Q 043901 316 LVLLAVENR 324 (331)
Q Consensus 316 ~l~~A~~~~ 324 (331)
|.+.+....
T Consensus 222 ~~~~~~~~~ 230 (236)
T 1ikn_D 222 SYDTESEFT 230 (236)
T ss_dssp CCCCC----
T ss_pred HHhhhcccc
Confidence 988765543
|
| >4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-34 Score=245.10 Aligned_cols=187 Identities=12% Similarity=0.117 Sum_probs=143.5
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCccc-------ccccCCCCCcHHHHHHhcCCH-HHHHHHHhcCCCccccccccCC
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDREL-------ISVRNNDSETPLFLAALHGNM-DAFLCLRSFNQAKDNRQCRKNN 127 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-------~~~~d~~g~tpLh~A~~~~~~-~~~~~Ll~~g~~~~~~~~~~~~ 127 (331)
..+.+||+.|+..|+.++|++|++.++.. ++..+..|.||||+|+..+.. .++++|++.|+++ +.+|.+
T Consensus 9 ~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv---n~~d~~ 85 (269)
T 4b93_B 9 YREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV---NVTSQD 85 (269)
T ss_dssp CHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCT---TCCCTT
T ss_pred ccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC---CCcCCC
Confidence 45679999999999999999999988652 456778899999999988775 4889999999999 999999
Q ss_pred CCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCccc
Q 043901 128 GETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECN 207 (331)
Q Consensus 128 g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~ 207 (331)
|.||||+|+..|+.+++++|++.+++ ++.++..|.||++.|+..++ .++++.|+..+.++
T Consensus 86 G~TpLh~A~~~g~~~~v~~Ll~~~a~-~~~~~~~g~t~l~~a~~~~~-------~~~~~~Ll~~g~~~------------ 145 (269)
T 4b93_B 86 GSSPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGH-------FQVVKCLLDSNAKP------------ 145 (269)
T ss_dssp SCCHHHHHHHTTCTTHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTC-------HHHHHHHHHTTCCS------------
T ss_pred CCCHHHHHHHcCcHHHHHHHHhcCCC-cCccCCCCCCccccccccCh-------HHHHHHHHHCCCCC------------
Confidence 99999999999999999999999998 99999999999999999998 78898888776543
Q ss_pred ccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHH
Q 043901 208 RSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAA 287 (331)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~ 287 (331)
+.+|..|+||||+|+
T Consensus 146 -----------------------------------------------------------------n~~d~~g~TpL~~A~ 160 (269)
T 4b93_B 146 -----------------------------------------------------------------NKKDLSGNTPLIYAC 160 (269)
T ss_dssp -----------------------------------------------------------------CCCCTTCCCHHHHHH
T ss_pred -----------------------------------------------------------------CCCCCCCCCHHHHHH
Confidence 344668999999999
Q ss_pred hcChHHHHHHHHhhCCccccccccCCCcHHHHHHHcCccccccC
Q 043901 288 KMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 288 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
..|+.++|++|++ .|++++.+|..|+||||+|+.+|+.++|++
T Consensus 161 ~~g~~~~v~~Ll~-~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~ 203 (269)
T 4b93_B 161 SGGHHELVALLLQ-HGASINASNNKGNTALHEAVIEKHVFVVEL 203 (269)
T ss_dssp HTTCGGGHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHH
T ss_pred HCCCHHHHHHHHH-CCCCCCccccCCCcHHHHHHHcCCHHHHHH
Confidence 9999999999999 799999999999999999999999999873
|
| >3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-32 Score=223.27 Aligned_cols=193 Identities=13% Similarity=0.121 Sum_probs=167.5
Q ss_pred chhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhc
Q 043901 2 EVNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASK 80 (331)
Q Consensus 2 ~~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~ 80 (331)
+.++|+.|+..|+.+.++.++...+. .++.. ..|.||||+|+..|+.+++++|++.
T Consensus 5 ~~~~L~~A~~~g~~~~v~~ll~~~~~-----------------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 61 (201)
T 3hra_A 5 EVGALLEAANQRDTKKVKEILQDTTY-----------------------QVDEVDTEGNTPLNIAVHNNDIEIAKALIDR 61 (201)
T ss_dssp CTTHHHHHHHTTCHHHHHHHHTCTTC-----------------------CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred cccHHHHHHHhccHHHHHHHHHcCCC-----------------------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 56899999999999999999987542 24445 7899999999999999999999999
Q ss_pred CcccccccCCCCCcHHHHHHhcCCHHHHHHHHh-cCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCccccccc
Q 043901 81 DRELISVRNNDSETPLFLAALHGNMDAFLCLRS-FNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVN 159 (331)
Q Consensus 81 ~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~-~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~ 159 (331)
|++ ++..|..|.||||+|+..|+.+++++|++ .++++ +.++..|.||||+|+..|+.+++++|++.|..+++.+|
T Consensus 62 g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~ 137 (201)
T 3hra_A 62 GAD-INLQNSISDSPYLYAGAQGRTEILAYMLKHATPDL---NKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQN 137 (201)
T ss_dssp TCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCT---TCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCC
T ss_pred CCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCccc---ccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCC
Confidence 998 99999999999999999999999999995 55666 99999999999999999999999999999955599999
Q ss_pred CCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHH
Q 043901 160 ENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMK 239 (331)
Q Consensus 160 ~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (331)
..|.||||+|+..+.. .....++++.|+..+.+.
T Consensus 138 ~~g~t~L~~A~~~~~~--~~~~~~~v~~Ll~~ga~~-------------------------------------------- 171 (201)
T 3hra_A 138 DFGYTALIEAVGLREG--NQLYQDIVKLLMENGADQ-------------------------------------------- 171 (201)
T ss_dssp TTSCCHHHHHHHSSCC--SHHHHHHHHHHHHTTCCT--------------------------------------------
T ss_pred CCCCCHHHHHHHhccc--hhhHHHHHHHHHHCCCCC--------------------------------------------
Confidence 9999999999988751 111246777777665442
Q ss_pred hchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHHh
Q 043901 240 ALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILD 300 (331)
Q Consensus 240 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~ 300 (331)
+.+|..|.||||+|+..|+.+++++|++
T Consensus 172 ---------------------------------~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 199 (201)
T 3hra_A 172 ---------------------------------SIKDNSGRTAMDYANQKGYTEISKILAQ 199 (201)
T ss_dssp ---------------------------------TCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred ---------------------------------CccCCCCCCHHHHHHHcCCHhHHHHHHh
Confidence 3456689999999999999999999998
|
| >3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=252.09 Aligned_cols=184 Identities=14% Similarity=0.106 Sum_probs=167.9
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHH
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSA 135 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A 135 (331)
..|.||||+|+..|+.++|++|++.|++ ++..|..|.||||+|+..|+.+++++|++.|+++ .+..|.||||+|
T Consensus 18 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-----~~~~g~t~L~~A 91 (364)
T 3ljn_A 18 DENMEKIHVAARKGQTDEVRRLIETGVS-PTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH-----SLWHGQKPIHLA 91 (364)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC-----CCBTTBCHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc-----cccCCCCHHHHH
Confidence 7899999999999999999999999988 9999999999999999999999999999999966 345799999999
Q ss_pred HhcCCHHHHHHHHHh----CCccccc-----------------ccCCCccHhHHHhcCC--CcccccccchhHHHHHhhh
Q 043901 136 ISGEYFSIAFQIMRA----YPDLVNS-----------------VNENGLTRLHILASKP--TAFKRGSRLGLFDRIIHYY 192 (331)
Q Consensus 136 ~~~~~~~~~~~Ll~~----~~~~~~~-----------------~~~~g~t~l~~A~~~~--~~~~~~~~~~~~~~li~~~ 192 (331)
+..|+.+++++|++. +.. ++. .|..|.||||+|+..+ + .++++.|+..+
T Consensus 92 ~~~g~~~~v~~Ll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~-------~~~v~~Ll~~g 163 (364)
T 3ljn_A 92 VMANKTDLVVALVEGAKERGQM-PESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEY-------LEMIKILVQLG 163 (364)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCC-HHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGG-------HHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHhccccCCC-HHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCch-------HHHHHHHHHcC
Confidence 999999999999999 666 665 8889999999999999 7 79999998887
Q ss_pred cccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhh
Q 043901 193 KTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKK 272 (331)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 272 (331)
.++
T Consensus 164 a~~----------------------------------------------------------------------------- 166 (364)
T 3ljn_A 164 ASP----------------------------------------------------------------------------- 166 (364)
T ss_dssp CCT-----------------------------------------------------------------------------
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 553
Q ss_pred hccCCCCchHHHHHHhcChHHHHHHHHhhCCcc-----ccccccCCCcHHHHHHHcCccccccC
Q 043901 273 DQQSGRNETAILIAAKMGVAEMVKKILDTFPVA-----MQDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 273 ~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~-----~~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
+.+|..|.||||+|+..|+.+++++|++ .|++ ++.+|..|+||||+|+.+|+.++|++
T Consensus 167 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ 229 (364)
T 3ljn_A 167 TAKDKADETPLMRAMEFRNREALDLMMD-TVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMR 229 (364)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHH-HCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHH
T ss_pred cccCCCCCCHHHHHHHcCCHHHHHHHHh-cccccccccccccCCCCCcHHHHHHHcCCHHHHHH
Confidence 2346689999999999999999999999 5887 99999999999999999999999863
|
| >2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-32 Score=226.09 Aligned_cols=191 Identities=15% Similarity=0.108 Sum_probs=171.0
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcC
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKD 81 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 81 (331)
.++|+.|+..|+.+.++.+++... + .+.. ..|.||||+|+..|+.+++++|++.+
T Consensus 26 ~t~L~~A~~~g~~~~v~~Ll~~g~-----------------------~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~ 81 (223)
T 2f8y_A 26 ETALHLAARYSRSDAAKRLLEASA-----------------------D-ANIQDNMGRTPLHAAVSADAQGVFQILIRNR 81 (223)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTC-----------------------C-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHBT
T ss_pred CchHHHHHHcCCHHHHHHHHHcCC-----------------------C-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 467888888888888888887642 2 3445 78999999999999999999999999
Q ss_pred cccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCC
Q 043901 82 RELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNEN 161 (331)
Q Consensus 82 ~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~ 161 (331)
+..++..+..|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|+..|+.+++++|++.|++ ++.+|..
T Consensus 82 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~ 157 (223)
T 2f8y_A 82 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV---NAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNR 157 (223)
T ss_dssp TSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT---TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTT
T ss_pred CCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC---cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCC
Confidence 8669999999999999999999999999999999998 99999999999999999999999999999998 9999999
Q ss_pred CccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhc
Q 043901 162 GLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKAL 241 (331)
Q Consensus 162 g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (331)
|.||||+|+..++ .++++.|+..+.+.
T Consensus 158 g~t~L~~A~~~~~-------~~~v~~Ll~~ga~~---------------------------------------------- 184 (223)
T 2f8y_A 158 EETPLFLAAREGS-------YETAKVLLDHFANR---------------------------------------------- 184 (223)
T ss_dssp CCCHHHHHHHHTC-------HHHHHHHHHTTCCT----------------------------------------------
T ss_pred CcCHHHHHHHcCC-------HHHHHHHHHcCCCC----------------------------------------------
Confidence 9999999999998 79999998887543
Q ss_pred hhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHHhhCCccc
Q 043901 242 PIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDTFPVAM 306 (331)
Q Consensus 242 l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~ 306 (331)
+.++..|.||||+|++.|+.+++++|++ +|+..
T Consensus 185 -------------------------------~~~~~~g~t~l~~A~~~~~~~i~~~L~~-~g~~~ 217 (223)
T 2f8y_A 185 -------------------------------DITDHMDRLPRDIAQERMHHDIVRLLDE-YNLVR 217 (223)
T ss_dssp -------------------------------TCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCSS
T ss_pred -------------------------------ccccccCCCHHHHHHHhcchHHHHHHHH-cCCCc
Confidence 2346679999999999999999999999 67754
|
| >2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=239.36 Aligned_cols=204 Identities=16% Similarity=0.138 Sum_probs=166.6
Q ss_pred CchhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCccee----c-cCCCchhhhhhcc---CCHH
Q 043901 1 MEVNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYI----R-LGGNHGRKYIKPL---GNEA 72 (331)
Q Consensus 1 ~~~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~----~-~~g~t~Lh~A~~~---g~~~ 72 (331)
++.++||.||..|+.+.++.+++. +++.+ .+ ++. + ..|.||||+|+.. |+.+
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~------------------l~~~g-~~-i~~~~~~~d~~g~t~L~~A~~~~~~g~~~ 60 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEY------------------LRWNS-KY-LTDSAYTEGSTGKTCLMKAVLNLQDGVNA 60 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHH------------------HHHHT-CC-TTSGGGSBTTTTBCHHHHHHHTCBTTBCT
T ss_pred CCccHHHHHHHcCCHHHHHHHHHH------------------HHHcC-CC-cccccccCCCCCCCHHHHHHHccccchHH
Confidence 467899999999999876655542 12222 22 333 4 8899999999999 9999
Q ss_pred HHHHHHhcCcccccc-----------cCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCC-------------C
Q 043901 73 MCHCTASKDRELISV-----------RNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNN-------------G 128 (331)
Q Consensus 73 ~v~~Ll~~~~~~~~~-----------~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~-------------g 128 (331)
++++|++.|++ ++. .|..|.||||+|+..|+.+++++|++.|+++ +.++.. |
T Consensus 61 ~v~~Ll~~g~~-~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~---~~~~~~~~~~~~~~~~~~~g 136 (256)
T 2etb_A 61 CIMPLLQIDKD-SGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV---HLRACGRFFQKHQGTCFYFG 136 (256)
T ss_dssp THHHHHHHHHH-TTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCCSGGGSCCSSSCCCSC
T ss_pred HHHHHHhcCCc-ccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC---CcccccccccccccccccCC
Confidence 99999999876 543 3477999999999999999999999999998 888776 9
Q ss_pred CcHHHHHHhcCCHHHHHHHHH---hCCcccccccCCCccHhHHHhc--CCCcccccccch-------hHHHHHhhhcccC
Q 043901 129 ETILHSAISGEYFSIAFQIMR---AYPDLVNSVNENGLTRLHILAS--KPTAFKRGSRLG-------LFDRIIHYYKTKG 196 (331)
Q Consensus 129 ~t~Lh~A~~~~~~~~~~~Ll~---~~~~~~~~~~~~g~t~l~~A~~--~~~~~~~~~~~~-------~~~~li~~~~~~~ 196 (331)
.||||+|+..|+.+++++|++ .|++ ++.+|..|+||||+|+. .++ .+ +++.|+..+.+..
T Consensus 137 ~tpL~~A~~~~~~~~v~~Ll~~~~~ga~-~n~~d~~g~TpLh~A~~~~~~~-------~~~~~~~~~iv~~Ll~~ga~~~ 208 (256)
T 2etb_A 137 ELPLSLAACTKQWDVVTYLLENPHQPAS-LEATDSLGNTVLHALVMIADNS-------PENSALVIHMYDGLLQMGARLC 208 (256)
T ss_dssp SSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSC-------HHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHcCCHHHHHHHHhccccCCC-cCccCCCCCCHHHHHHHcccCC-------chhhHHHHHHHHHHHHcCCCcc
Confidence 999999999999999999999 8888 99999999999999998 555 45 7788877776643
Q ss_pred cCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccC
Q 043901 197 EANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQS 276 (331)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 276 (331)
.... .. +.+|
T Consensus 209 ~~~~----------------------------------------------------------~~------------~~~d 218 (256)
T 2etb_A 209 PTVQ----------------------------------------------------------LE------------EISN 218 (256)
T ss_dssp TTCC----------------------------------------------------------GG------------GCCC
T ss_pred cccc----------------------------------------------------------cc------------cccC
Confidence 1000 00 3457
Q ss_pred CCCchHHHHHHhcChHHHHHHHHhhCCcccc
Q 043901 277 GRNETAILIAAKMGVAEMVKKILDTFPVAMQ 307 (331)
Q Consensus 277 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~ 307 (331)
..|+||||+|+..|+.+++++|+++ |.+..
T Consensus 219 ~~g~tpL~~A~~~g~~~~v~~Ll~~-g~~~~ 248 (256)
T 2etb_A 219 HQGLTPLKLAAKEGKIEIFRHILQR-EFSGA 248 (256)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHH-HHHHH
T ss_pred CCCCCHHHHHHHhCCHHHHHHHHhC-CCCCC
Confidence 7899999999999999999999994 66543
|
| >1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-34 Score=249.89 Aligned_cols=219 Identities=12% Similarity=0.051 Sum_probs=159.6
Q ss_pred chhhhhhccCCHHHHHHHHhcCcccccc-cCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhc
Q 043901 60 HGRKYIKPLGNEAMCHCTASKDRELISV-RNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISG 138 (331)
Q Consensus 60 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~-~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~ 138 (331)
+.+|.|+..+..+++++|++.|.+ +|. +|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..
T Consensus 99 ~~~~~a~~~~~~~~~~~l~~~g~d-vn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~---n~~d~~g~TpLh~A~~~ 174 (327)
T 1sw6_A 99 QQQHVSFDSLLQEVNDAFPNTQLN-LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR---LYGDNMGESCLVKAVKS 174 (327)
T ss_dssp -----CHHHHHHHHHHHCTTSCCC-SCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TBCCTTCCCHHHHHHHS
T ss_pred chhHHHHHhhHHHHHHHHHhcCCC-cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHh
Confidence 345888888889999999999998 999 8999999999999999999999999999999 99999999999999999
Q ss_pred CC---HHHHHHHHHhCCcccccccCCCccHhHHHhc----CCCcccccccchhHHHHHhhhcccCcCCCCCCCccccccc
Q 043901 139 EY---FSIAFQIMRAYPDLVNSVNENGLTRLHILAS----KPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSIS 211 (331)
Q Consensus 139 ~~---~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~----~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~ 211 (331)
|+ .++++.|++.+..+++.+|..|+||||+|+. .++ .++++.++..+...........-.+. ..
T Consensus 175 g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~-------~~~v~~Ll~~~~~~~~~~~~~~i~~~--~~ 245 (327)
T 1sw6_A 175 VNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGC-------SAAAKYYLDILMGWIVKKQNRPIQSG--TN 245 (327)
T ss_dssp SHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTC-------HHHHHHHHHHHHHHHHHGGGCCEEEC----
T ss_pred cccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHcccccc-------HHHHHHHHHHHHHHHhcccchHHHhh--hh
Confidence 98 7888888888755599999999999999998 777 78999988765432110000000000 00
Q ss_pred ccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhh--hccCCCCchHHHHHHhc
Q 043901 212 FSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKK--DQQSGRNETAILIAAKM 289 (331)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~g~tpLh~A~~~ 289 (331)
..+.+.. .....+.++++. +.. +++|.+. +.+|..|+||||+|+..
T Consensus 246 ~~g~~~~---~~~~~g~t~L~~-----------------------a~~------~~~Ll~~~~n~~d~~G~TpLh~A~~~ 293 (327)
T 1sw6_A 246 EKESKPN---DKNGERKDSILE-----------------------NLD------LKWIIANMLNAQDSNGDTCLNIAARL 293 (327)
T ss_dssp -----------------CHHHH-----------------------HCS------HHHHHHHTTTCCCTTSCCHHHHHHHH
T ss_pred cccCCcc---cccccCCChhHH-----------------------HHH------HHHHHHhCCCCCCCCCCCHHHHHHHc
Confidence 0000000 000001111111 000 2222221 67788999999999999
Q ss_pred ChHHHHHHHHhhCCccccccccCCCcHHHHHHHcC
Q 043901 290 GVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENR 324 (331)
Q Consensus 290 g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~ 324 (331)
|+.++|++|++ .|+|++.+|..|+||||+|+++|
T Consensus 294 g~~~~v~~Ll~-~Gad~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 294 GNISIVDALLD-YGADPFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp CCHHHHHHHHH-TTCCTTCCCTTSCCGGGGTCC--
T ss_pred CCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHhcC
Confidence 99999999999 69999999999999999999875
|
| >4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-32 Score=217.86 Aligned_cols=157 Identities=19% Similarity=0.199 Sum_probs=144.3
Q ss_pred hHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcCc
Q 043901 4 NSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKDR 82 (331)
Q Consensus 4 ~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~ 82 (331)
++|+.|++.|+.+.|+.|++.+.+ ++.+ ..|.||||+|+..++.+++++|++.|+
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gad------------------------vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~ga 61 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGAD------------------------VNASDSDGRTPLHHAAENGHKEVVKLLISKGA 61 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCC------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCC------------------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence 579999999999999999987432 4556 889999999999999999999999999
Q ss_pred ccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCC
Q 043901 83 ELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENG 162 (331)
Q Consensus 83 ~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g 162 (331)
+ ++.+|..|.||||+|+..|+.+++++|++.|+++ +.+|..|+||||+|+..|+.+++++|++.|++ ++.+|..|
T Consensus 62 d-~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadv---n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G 136 (169)
T 4gpm_A 62 D-VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV---NAKDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNTSDSDG 136 (169)
T ss_dssp C-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTS
T ss_pred c-hhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCC
Confidence 8 9999999999999999999999999999999999 99999999999999999999999999999998 99999999
Q ss_pred ccHhHHHhcCCCcccccccchhHHHHHhhhcccC
Q 043901 163 LTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKG 196 (331)
Q Consensus 163 ~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~ 196 (331)
+||||+|+..++ .++++.|++.+++++
T Consensus 137 ~TpL~~A~~~g~-------~~iv~~Ll~~GA~ie 163 (169)
T 4gpm_A 137 RTPLDLAREHGN-------EEVVKLLEKQGGWLE 163 (169)
T ss_dssp CCHHHHHHHTTC-------HHHHHHHHTC-----
T ss_pred CCHHHHHHHcCC-------HHHHHHHHHCCCCcC
Confidence 999999999999 799999999998876
|
| >2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-34 Score=243.43 Aligned_cols=189 Identities=15% Similarity=0.141 Sum_probs=163.5
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhc----Cccccc----ccCCCCCcHHHHHHhc---CCHHHHHHHHhcCCCcc-----
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASK----DRELIS----VRNNDSETPLFLAALH---GNMDAFLCLRSFNQAKD----- 119 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~----~~~~~~----~~d~~g~tpLh~A~~~---~~~~~~~~Ll~~g~~~~----- 119 (331)
..|.||||+|+..|+.++|+.|++. +.+ ++ ..|..|.||||+|+.. |+.+++++|++.|+++.
T Consensus 11 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~ 89 (273)
T 2pnn_A 11 LYDRRSIFDAVAQSNCQELESLLPFLQRSKKR-LTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQF 89 (273)
T ss_dssp CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCC-TTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHHHhhcccc-cCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHH
Confidence 7899999999999999999999874 443 43 4588999999999987 99999999999987531
Q ss_pred ---ccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccC--------------CCccHhHHHhcCCCcccccccc
Q 043901 120 ---NRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNE--------------NGLTRLHILASKPTAFKRGSRL 182 (331)
Q Consensus 120 ---~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~--------------~g~t~l~~A~~~~~~~~~~~~~ 182 (331)
.+..+|..|.||||+|+..|+.+++++|+++|++ ++.++. .|.||||+|+..++ .
T Consensus 90 i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~-------~ 161 (273)
T 2pnn_A 90 VNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD-VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ-------L 161 (273)
T ss_dssp HTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTC-------H
T ss_pred hhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cCccccccccccccccccccCCCCHHHHHHHcCC-------H
Confidence 1122567999999999999999999999999998 888887 79999999999998 7
Q ss_pred hhHHHHHh---hhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhh
Q 043901 183 GLFDRIIH---YYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPY 259 (331)
Q Consensus 183 ~~~~~li~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~ 259 (331)
++++.|+. .+.++
T Consensus 162 ~~v~~Ll~~~~~gad~---------------------------------------------------------------- 177 (273)
T 2pnn_A 162 AIVKFLLQNSWQPADI---------------------------------------------------------------- 177 (273)
T ss_dssp HHHHHHHHCSSCCCCT----------------------------------------------------------------
T ss_pred HHHHHHHhcccCCCCc----------------------------------------------------------------
Confidence 99999988 55432
Q ss_pred hchhhHHHHHhhhhccCCCCchHHHHHHhcCh---------HHHHHHHHhhCCcccc-------ccccCCCcHHHHHHHc
Q 043901 260 IKKVQGLKFMEKKDQQSGRNETAILIAAKMGV---------AEMVKKILDTFPVAMQ-------DMDSEKKNLVLLAVEN 323 (331)
Q Consensus 260 ~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~---------~~~v~~Ll~~~~~~~~-------~~d~~g~t~l~~A~~~ 323 (331)
+.+|..|+||||+|+..|+ .+++++|++ .|++++ .+|..|+||||+|+++
T Consensus 178 -------------~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~-~ga~~n~~~~~~~~~d~~g~TpL~~A~~~ 243 (273)
T 2pnn_A 178 -------------SARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILI-LGAKLHPTLKLEEITNRKGLTPLALAASS 243 (273)
T ss_dssp -------------TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHHHHCTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred -------------eeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHH-hhhhcccccccccccCCCCCCHHHHHHHh
Confidence 3456789999999999988 899999999 599996 4899999999999999
Q ss_pred CccccccC
Q 043901 324 RQTSIYKL 331 (331)
Q Consensus 324 ~~~~iv~l 331 (331)
|+.+++++
T Consensus 244 g~~~iv~~ 251 (273)
T 2pnn_A 244 GKIGVLAY 251 (273)
T ss_dssp TCHHHHHH
T ss_pred ChHHHHHH
Confidence 99999863
|
| >2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-33 Score=239.31 Aligned_cols=226 Identities=14% Similarity=0.090 Sum_probs=163.8
Q ss_pred chhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhcc---CCHHHHHHH
Q 043901 2 EVNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPL---GNEAMCHCT 77 (331)
Q Consensus 2 ~~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~---g~~~~v~~L 77 (331)
+..+||.||..|+.+.++.+++....... +. .+....+ ..|.||||+|+.. |+.+++++|
T Consensus 13 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~------~~----------~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~L 76 (273)
T 2pnn_A 13 DRRSIFDAVAQSNCQELESLLPFLQRSKK------RL----------TDSEFKDPETGKTCLLKAMLNLHNGQNDTIALL 76 (273)
T ss_dssp CHHHHHHHHHTTCSSTTTTHHHHHHHSCC------CT----------TSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHH
T ss_pred cchHHHHHHHcCCHHHHHHHHHHHhhccc------cc----------CCcccccCcCCCCHHHHHHHHHhcCChHHHHHH
Confidence 45789999999999999988874211000 00 0112234 7899999999976 999999999
Q ss_pred HhcCccc------ccc----cCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccC--------------CCCcHHH
Q 043901 78 ASKDREL------ISV----RNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKN--------------NGETILH 133 (331)
Q Consensus 78 l~~~~~~------~~~----~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~--------------~g~t~Lh 133 (331)
++.|++. ++. .|..|.||||+|+..|+.+++++|++.|+++ +.++. .|.||||
T Consensus 77 l~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~---~~~~~~~~~~~~~~~~~~~~g~tpL~ 153 (273)
T 2pnn_A 77 LDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV---QAAANGDFFKKTKGRPGFYFGELPLS 153 (273)
T ss_dssp HHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCBCSGGGSSCSSSCCCCSCBSHHH
T ss_pred HHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc---CccccccccccccccccccCCCCHHH
Confidence 9987641 222 5678999999999999999999999999998 88876 7999999
Q ss_pred HHHhcCCHHHHHHHHH---hCCcccccccCCCccHhHHHhcCCCccccc--ccchhHHHHHhhhcccCcCCCCCCCcccc
Q 043901 134 SAISGEYFSIAFQIMR---AYPDLVNSVNENGLTRLHILASKPTAFKRG--SRLGLFDRIIHYYKTKGEANDEESPECNR 208 (331)
Q Consensus 134 ~A~~~~~~~~~~~Ll~---~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~~~~~~~~~ 208 (331)
+|+..|+.+++++|++ .|++ ++.+|..|+||||+|+..++..... ...++++.|+..+.++.....
T Consensus 154 ~A~~~g~~~~v~~Ll~~~~~gad-~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~-------- 224 (273)
T 2pnn_A 154 LAACTNQLAIVKFLLQNSWQPAD-ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLK-------- 224 (273)
T ss_dssp HHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCC--------
T ss_pred HHHHcCCHHHHHHHHhcccCCCC-ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccc--------
Confidence 9999999999999999 8887 9999999999999999977521000 002556666666554331000
Q ss_pred cccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHh
Q 043901 209 SISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAK 288 (331)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~ 288 (331)
. .+.+|..|+||||+|+.
T Consensus 225 --------------------------------------------------~------------~~~~d~~g~TpL~~A~~ 242 (273)
T 2pnn_A 225 --------------------------------------------------L------------EEITNRKGLTPLALAAS 242 (273)
T ss_dssp --------------------------------------------------G------------GGCCCTTSCCHHHHHHH
T ss_pred --------------------------------------------------c------------ccccCCCCCCHHHHHHH
Confidence 0 03467789999999999
Q ss_pred cChHHHHHHHHhhCCc-cccccccCCCcHHH
Q 043901 289 MGVAEMVKKILDTFPV-AMQDMDSEKKNLVL 318 (331)
Q Consensus 289 ~g~~~~v~~Ll~~~~~-~~~~~d~~g~t~l~ 318 (331)
.|+.+++++|+++ |+ |+......+++|-+
T Consensus 243 ~g~~~iv~~Ll~~-ga~dp~~~~~~~~~~~~ 272 (273)
T 2pnn_A 243 SGKIGVLAYILQR-EIHEPECRHAAAHHHHH 272 (273)
T ss_dssp TTCHHHHHHHHHH-HTC--------------
T ss_pred hChHHHHHHHHHC-CCCCchhhhhhhhhccC
Confidence 9999999999994 77 88888887777754
|
| >3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-33 Score=238.44 Aligned_cols=189 Identities=14% Similarity=0.083 Sum_probs=162.6
Q ss_pred cCCCchhhhhhccCCHHHHHHHHh----cCcccccccC----CCCCcHHHHHH---hcCCHHHHHHHHhcCCCc------
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTAS----KDRELISVRN----NDSETPLFLAA---LHGNMDAFLCLRSFNQAK------ 118 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~----~~~~~~~~~d----~~g~tpLh~A~---~~~~~~~~~~Ll~~g~~~------ 118 (331)
..|+|+||.|+..|+.++++.|++ .+.+ ++..+ ..|.||||+|+ ..|+.+++++|++.|++.
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~-~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~ 81 (260)
T 3jxi_A 3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKR-LTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF 81 (260)
T ss_dssp CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCC-TTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence 457899999999999996555555 8877 77665 67999999999 679999999999998653
Q ss_pred --cccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCccccccc--------------CCCccHhHHHhcCCCcccccccc
Q 043901 119 --DNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVN--------------ENGLTRLHILASKPTAFKRGSRL 182 (331)
Q Consensus 119 --~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~--------------~~g~t~l~~A~~~~~~~~~~~~~ 182 (331)
..++..|..|.||||+|+..|+.+++++|++.|++ ++.++ ..|.||||+|+..++ .
T Consensus 82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~-------~ 153 (260)
T 3jxi_A 82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD-VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQ-------P 153 (260)
T ss_dssp HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTC-------H
T ss_pred hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC-cCccccccccCcccccccccCCCCHHHHHHHcCC-------H
Confidence 12355566999999999999999999999999998 99888 689999999999999 7
Q ss_pred hhHHHHHh---hhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhh
Q 043901 183 GLFDRIIH---YYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPY 259 (331)
Q Consensus 183 ~~~~~li~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~ 259 (331)
++++.|+. .+.++
T Consensus 154 ~~v~~Ll~~~~~ga~~---------------------------------------------------------------- 169 (260)
T 3jxi_A 154 HIVHYLTENGHKQADL---------------------------------------------------------------- 169 (260)
T ss_dssp HHHHHHHHCSSCCCCT----------------------------------------------------------------
T ss_pred HHHHHHHhccccCCCC----------------------------------------------------------------
Confidence 99999988 44432
Q ss_pred hchhhHHHHHhhhhccCCCCchHHHHHHhcCh---------HHHHHHHHhhCCccc-------cccccCCCcHHHHHHHc
Q 043901 260 IKKVQGLKFMEKKDQQSGRNETAILIAAKMGV---------AEMVKKILDTFPVAM-------QDMDSEKKNLVLLAVEN 323 (331)
Q Consensus 260 ~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~---------~~~v~~Ll~~~~~~~-------~~~d~~g~t~l~~A~~~ 323 (331)
+.+|..|+||||+|+..|+ .+++++|++ .|+++ +.+|..|+||||+|+++
T Consensus 170 -------------~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~-~ga~~~~~~~~~~~~d~~g~tpL~~A~~~ 235 (260)
T 3jxi_A 170 -------------RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLI-KCAKLFPDTNLEALLNNDGLSPLMMAAKT 235 (260)
T ss_dssp -------------TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHH-HHHHHCTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred -------------cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHH-hCcccccccchhhcccCCCCCHHHHHHHc
Confidence 3456789999999998887 799999999 69998 78999999999999999
Q ss_pred CccccccC
Q 043901 324 RQTSIYKL 331 (331)
Q Consensus 324 ~~~~iv~l 331 (331)
|+.+++++
T Consensus 236 g~~~~v~~ 243 (260)
T 3jxi_A 236 GKIGIFQH 243 (260)
T ss_dssp TCHHHHHH
T ss_pred CCHHHHHH
Confidence 99999873
|
| >3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-32 Score=217.28 Aligned_cols=170 Identities=15% Similarity=0.151 Sum_probs=151.3
Q ss_pred CCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHh
Q 043901 58 GNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAIS 137 (331)
Q Consensus 58 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~ 137 (331)
+.||||+|+..|+.+++++|++.++..++..|..|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|+.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~ 78 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP---HILAKERESALSLAST 78 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT---TCCCTTCCCHHHHHHH
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc---hhhcccCCCHHHHHHH
Confidence 5799999999999999999999999879999999999999999999999999999999998 9999999999999999
Q ss_pred cCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCC
Q 043901 138 GEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDD 217 (331)
Q Consensus 138 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (331)
.|+.+++++|++.|++ ++.+|..|.||||+|+..++ .++++.|+..+.+.
T Consensus 79 ~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~ga~~---------------------- 128 (172)
T 3v30_A 79 GGYTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNH-------VKCVEALLARGADL---------------------- 128 (172)
T ss_dssp TTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTC-------HHHHHHHHHTTCCT----------------------
T ss_pred CCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCC-------HHHHHHHHHcCCCc----------------------
Confidence 9999999999999998 99999999999999999998 79999998876542
Q ss_pred ccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHH
Q 043901 218 KCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKK 297 (331)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~ 297 (331)
+.++..|.||||+|+..|+.+++++
T Consensus 129 -------------------------------------------------------~~~~~~g~t~l~~A~~~~~~~~~~~ 153 (172)
T 3v30_A 129 -------------------------------------------------------TTEADSGYTPMDLAVALGYRKVQQV 153 (172)
T ss_dssp -------------------------------------------------------TCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred -------------------------------------------------------cccCCCCCCHHHHHHHhCcHHHHHH
Confidence 2346689999999999999999999
Q ss_pred HHhhCCccccccccCCCcH
Q 043901 298 ILDTFPVAMQDMDSEKKNL 316 (331)
Q Consensus 298 Ll~~~~~~~~~~d~~g~t~ 316 (331)
|++ +++++...+..|.||
T Consensus 154 L~~-~~~~~~~~~~~~~~p 171 (172)
T 3v30_A 154 IEN-HILKLFQSNLVPADP 171 (172)
T ss_dssp HHH-HHHHHSCC-------
T ss_pred HHH-HHHHHhcccCCCCCC
Confidence 999 699999999999887
|
| >3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.4e-32 Score=232.62 Aligned_cols=211 Identities=13% Similarity=0.066 Sum_probs=164.8
Q ss_pred CchhHHHHHHhcCCHHHHHHHHH----cCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhh---ccCCHH
Q 043901 1 MEVNSLSKFAVRGQWDNIVQAYE----NNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIK---PLGNEA 72 (331)
Q Consensus 1 ~~~~~L~~a~~~g~~~~~~~ll~----~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~---~~g~~~ 72 (331)
+++++||.||+.|+.+.++.+++ ...... ...... ..|.||||+|+ ..|+.+
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~--------------------~~~~~~~~~g~t~L~~A~~~~~~g~~~ 63 (260)
T 3jxi_A 4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLT--------------------DEEFREPSTGKTCLPKALLNLSAGRND 63 (260)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTT--------------------SGGGSCTTTCCCHHHHHHTSCBTTBCT
T ss_pred chHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcc--------------------hhhhhccCCCCcHHHHHHHHhhcCCHH
Confidence 36789999999999998877776 322211 101122 67999999999 789999
Q ss_pred HHHHHHhcCcc----------cccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCcccccccc--------------CCC
Q 043901 73 MCHCTASKDRE----------LISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRK--------------NNG 128 (331)
Q Consensus 73 ~v~~Ll~~~~~----------~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~--------------~~g 128 (331)
++++|++.+++ .++..|..|.||||+|+..|+.+++++|++.|+++ +.++ ..|
T Consensus 64 ~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~---~~~~~~~~~~~~~~~~~~~~g 140 (260)
T 3jxi_A 64 TIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV---HAQARGRFFQPKDEGGYFYFG 140 (260)
T ss_dssp HHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCEECCCSSSCCCCSCCSC
T ss_pred HHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc---CccccccccCcccccccccCC
Confidence 99999998753 14445668999999999999999999999999998 8887 689
Q ss_pred CcHHHHHHhcCCHHHHHHHHH---hCCcccccccCCCccHhHHHhcCCCcccc--cccchhHHHHHhhhcccCcCCCCCC
Q 043901 129 ETILHSAISGEYFSIAFQIMR---AYPDLVNSVNENGLTRLHILASKPTAFKR--GSRLGLFDRIIHYYKTKGEANDEES 203 (331)
Q Consensus 129 ~t~Lh~A~~~~~~~~~~~Ll~---~~~~~~~~~~~~g~t~l~~A~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~~~~ 203 (331)
.||||+|+..|+.+++++|++ .|++ ++.+|..|+||||+|+..++.... ....++++.|+..+.+......
T Consensus 141 ~tpL~~A~~~g~~~~v~~Ll~~~~~ga~-~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~--- 216 (260)
T 3jxi_A 141 ELPLSLAACTNQPHIVHYLTENGHKQAD-LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTN--- 216 (260)
T ss_dssp SSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCC---
T ss_pred CCHHHHHHHcCCHHHHHHHHhccccCCC-CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccc---
Confidence 999999999999999999999 8887 999999999999999986652100 0012566666666655431000
Q ss_pred CcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHH
Q 043901 204 PECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAI 283 (331)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpL 283 (331)
.. +.+|..|+|||
T Consensus 217 -------------------------------------------------------~~------------~~~d~~g~tpL 229 (260)
T 3jxi_A 217 -------------------------------------------------------LE------------ALLNNDGLSPL 229 (260)
T ss_dssp -------------------------------------------------------GG------------GCCCTTSCCHH
T ss_pred -------------------------------------------------------hh------------hcccCCCCCHH
Confidence 00 34677899999
Q ss_pred HHHHhcChHHHHHHHHhhCCccc
Q 043901 284 LIAAKMGVAEMVKKILDTFPVAM 306 (331)
Q Consensus 284 h~A~~~g~~~~v~~Ll~~~~~~~ 306 (331)
|+|+..|+.+++++|+++ |.+.
T Consensus 230 ~~A~~~g~~~~v~~Ll~~-g~~~ 251 (260)
T 3jxi_A 230 MMAAKTGKIGIFQHIIRR-EIAD 251 (260)
T ss_dssp HHHHHTTCHHHHHHHHHH-HHHH
T ss_pred HHHHHcCCHHHHHHHHHh-CCCc
Confidence 999999999999999995 6554
|
| >4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.4e-32 Score=236.17 Aligned_cols=187 Identities=12% Similarity=0.151 Sum_probs=170.0
Q ss_pred CCCchhhhhhccCCHHHHHHHHhcCcc-cccccCCCCCcHHHHHHhcCCHHHHHHHHhcCC-CccccccccCCCCcHHHH
Q 043901 57 GGNHGRKYIKPLGNEAMCHCTASKDRE-LISVRNNDSETPLFLAALHGNMDAFLCLRSFNQ-AKDNRQCRKNNGETILHS 134 (331)
Q Consensus 57 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~-~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~-~~~~~~~~~~~g~t~Lh~ 134 (331)
.+++++|.|+..|+.+.++.+++.+.+ .+|..|..|.||||+|+..|+.+++++|++.|+ ++ +..+..|.||||+
T Consensus 75 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~---~~~~~~g~tpL~~ 151 (276)
T 4hbd_A 75 ACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKV---DKQNRAGYSPIML 151 (276)
T ss_dssp HHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCT---TCCCTTSCCHHHH
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcC---CCCCCCCCCHHHH
Confidence 357899999999999999999987643 388899999999999999999999999999998 76 9999999999999
Q ss_pred HH-----hcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCccccc
Q 043901 135 AI-----SGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRS 209 (331)
Q Consensus 135 A~-----~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~ 209 (331)
|+ ..++.+++++|++.|.. .+..+..|.||||+|+..++ .++++.|+..+.++
T Consensus 152 a~~~~~~~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpLh~A~~~g~-------~~~v~~Ll~~gad~-------------- 209 (276)
T 4hbd_A 152 TALATLKTQDDIETVLQLFRLGNI-NAKASQAGQTALMLAVSHGR-------VDVVKALLACEADV-------------- 209 (276)
T ss_dssp GGGCCCCSHHHHHHHHHHHHHSCT-TCCCTTTCCCHHHHHHHTTC-------HHHHHHHHHTTCCT--------------
T ss_pred HHHHHhhhhhhHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCC-------HHHHHHHHhCCCCC--------------
Confidence 99 67899999999999987 88889999999999999998 79999998887553
Q ss_pred ccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhc
Q 043901 210 ISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKM 289 (331)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~ 289 (331)
+.+|..|+||||+|+..
T Consensus 210 ---------------------------------------------------------------n~~d~~G~TpLh~A~~~ 226 (276)
T 4hbd_A 210 ---------------------------------------------------------------NVQDDDGSTALMCACEH 226 (276)
T ss_dssp ---------------------------------------------------------------TCCCTTSCCHHHHHHHH
T ss_pred ---------------------------------------------------------------CCCCCCCCCHHHHHHHC
Confidence 34566899999999999
Q ss_pred ChHHHHHHHHhhCCccccccccCCCcHHHHHHHcCccccccC
Q 043901 290 GVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 290 g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
|+.+++++|++..|++++.+|..|+||||+|+++|+.+++++
T Consensus 227 g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~ 268 (276)
T 4hbd_A 227 GHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASM 268 (276)
T ss_dssp TCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHH
Confidence 999999999996799999999999999999999999999863
|
| >2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.6e-34 Score=238.10 Aligned_cols=195 Identities=12% Similarity=-0.019 Sum_probs=161.6
Q ss_pred HHhhhC-CCcceec-cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccc
Q 043901 43 LQQQLG-KPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDN 120 (331)
Q Consensus 43 Ll~~~~-~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~ 120 (331)
|++.+. ....+.. ..|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..|+.+++++|++.|+++
T Consensus 4 ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-- 80 (229)
T 2vge_A 4 VLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMND-PSQPNEEGITALHNAICGANYSIVDFLITAGANV-- 80 (229)
T ss_dssp ------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT--
T ss_pred hhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC--
Confidence 566662 1222333 6788999999999999999999999997 9999999999999999999999999999999998
Q ss_pred cccccCCCCcHHHHHHhcCCHHHHHHHHHhCCccccccc-CCCccHhHHH--hcCCCcccccccchhHHHHHhhhcccCc
Q 043901 121 RQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVN-ENGLTRLHIL--ASKPTAFKRGSRLGLFDRIIHYYKTKGE 197 (331)
Q Consensus 121 ~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~-~~g~t~l~~A--~~~~~~~~~~~~~~~~~~li~~~~~~~~ 197 (331)
+.+|..|.||||+|+..|+.+++++|++.|++ ++.++ ..|.||||+| +..++ .++++.|+..+.+..
T Consensus 81 -n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~g~tpL~~A~a~~~~~-------~~~v~~Ll~~ga~~~- 150 (229)
T 2vge_A 81 -NSPDSHGWTPLHCAASCNDTVICMALVQHGAA-IFATTLSDGATAFEKCDPYREGY-------ADCATYLADVEQSMG- 150 (229)
T ss_dssp -TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCSSTTCCTGGGCCTTSTTH-------HHHHHHHHHHHHHTT-
T ss_pred -CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cccccCCCCCCHHHHHHHHhcCh-------HHHHHHHHHcCCCcc-
Confidence 99999999999999999999999999999998 88886 6999999999 88888 799999998887644
Q ss_pred CCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCC
Q 043901 198 ANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSG 277 (331)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 277 (331)
.++.
T Consensus 151 ----------------------------------------------------------------------------~~~~ 154 (229)
T 2vge_A 151 ----------------------------------------------------------------------------LMNS 154 (229)
T ss_dssp ----------------------------------------------------------------------------TSGG
T ss_pred ----------------------------------------------------------------------------cccC
Confidence 2234
Q ss_pred CCchHHHHHHhcChHHHHHHHHhhCCcc--ccccccCCCcHHHHHHHcCcccccc
Q 043901 278 RNETAILIAAKMGVAEMVKKILDTFPVA--MQDMDSEKKNLVLLAVENRQTSIYK 330 (331)
Q Consensus 278 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~--~~~~d~~g~t~l~~A~~~~~~~iv~ 330 (331)
.|.||+|.++..+.. ++|++ .|++ ++.+|..|+||||+|+++|+.++|+
T Consensus 155 ~~~~~l~~~~~~~~~---~~ll~-~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~ 205 (229)
T 2vge_A 155 GAVYALWDYSAEFGD---ELSFR-EGESVTVLRRDGPEETDWWWAALHGQEGYVP 205 (229)
T ss_dssp GEEEESSCBCCSSTT---BCCBC-TTCEEEEEESSCTTCSSEEEEEETTEEEEEE
T ss_pred CchHHHHHHhhcccc---ccCcc-ccccccccccCCCcccHHHHHHHcCCcceee
Confidence 577777755544432 45676 5877 6778999999999999999999886
|
| >3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-31 Score=223.90 Aligned_cols=185 Identities=17% Similarity=0.139 Sum_probs=168.0
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccc-cCCCCcHHHH
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCR-KNNGETILHS 134 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~-~~~g~t~Lh~ 134 (331)
..|.||||.|+..|+.+++++|++.|.+ ++..+..|.||||+|+..|+.+++++|++.|+++ +.. +..|.||||+
T Consensus 7 ~~~~~~l~~A~~~g~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~---~~~~~~~~~t~L~~ 82 (240)
T 3eu9_A 7 DYSTWDIVKATQYGIYERCRELVEAGYD-VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIV---DQLGGDLNSTPLHW 82 (240)
T ss_dssp CGGGCCHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCBTTTTBCHHHH
T ss_pred cccchHHHHHHHcCChHHHHHHHHcCCC-cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcc---hhhcCCcCCChhHH
Confidence 6789999999999999999999999988 9999999999999999999999999999999987 544 4559999999
Q ss_pred HHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccC
Q 043901 135 AISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSK 214 (331)
Q Consensus 135 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (331)
|+..|+.+++++|++.|++ ++.++..|.||||+|+..++ .++++.|+..+.+.
T Consensus 83 A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~-------~~~~~~Ll~~~~~~------------------- 135 (240)
T 3eu9_A 83 ATRQGHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQFGH-------TSIVAYLIAKGQDV------------------- 135 (240)
T ss_dssp HHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTC-------HHHHHHHHHTTCCT-------------------
T ss_pred HHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCH-------HHHHHHHHhcCCCc-------------------
Confidence 9999999999999999998 99999999999999999998 78999988876442
Q ss_pred CCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcCh-HH
Q 043901 215 NDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGV-AE 293 (331)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~-~~ 293 (331)
+.++..|.||||+|+..++ .+
T Consensus 136 ----------------------------------------------------------~~~~~~g~t~l~~a~~~~~~~~ 157 (240)
T 3eu9_A 136 ----------------------------------------------------------DMMDQNGMTPLMWAAYRTHSVD 157 (240)
T ss_dssp ----------------------------------------------------------TCCCTTSCCHHHHHHHHCCSST
T ss_pred ----------------------------------------------------------cccCCCCCcHHHHHHHhCChHH
Confidence 2345679999999997765 89
Q ss_pred HHHHHHhhCCcccccccc-CCCcHHHHHHHcCcccccc
Q 043901 294 MVKKILDTFPVAMQDMDS-EKKNLVLLAVENRQTSIYK 330 (331)
Q Consensus 294 ~v~~Ll~~~~~~~~~~d~-~g~t~l~~A~~~~~~~iv~ 330 (331)
++++|++ .+++++..+. .|.||||+|+.+|+.++++
T Consensus 158 ~~~~L~~-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~ 194 (240)
T 3eu9_A 158 PTRLLLT-FNVSVNLGDKYHKNTALHWAVLAGNTTVIS 194 (240)
T ss_dssp THHHHHH-TTCCTTCCCTTTCCCHHHHHHHHTCHHHHH
T ss_pred HHHHHHh-cCCCcchhhccCCCcHHHHHHHcCCHHHHH
Confidence 9999999 7999999997 9999999999999999886
|
| >1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-31 Score=209.91 Aligned_cols=159 Identities=16% Similarity=0.170 Sum_probs=145.0
Q ss_pred CCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHH
Q 043901 57 GGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAI 136 (331)
Q Consensus 57 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~ 136 (331)
...||||.|+..|+.+++++|++.+++ ++..|..|.||||+|+. |+.+++++|++.|+++ +.++..|.||||+|+
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~ 78 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMKL-GNPEIARRLLLRGANP---DLKDRTGFAVIHDAA 78 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCC-TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHH
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCC-ccccCccCccHHHHHHc-CcHHHHHHHHHcCCCC---CCCCCCCCCHHHHHH
Confidence 356899999999999999999999988 99999999999999999 9999999999999998 999999999999999
Q ss_pred hcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCC
Q 043901 137 SGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKND 216 (331)
Q Consensus 137 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (331)
..|+.+++++|++.|++ ++.+|..|.||||+|+..++ .++++.|+..+.+..
T Consensus 79 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~g~~~~-------------------- 130 (162)
T 1ihb_A 79 RAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGH-------LRVVEFLVKHTASNV-------------------- 130 (162)
T ss_dssp HHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTC-------HHHHHHHHHHSCCCT--------------------
T ss_pred HcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCC-------HHHHHHHHHccCCCC--------------------
Confidence 99999999999999988 99999999999999999998 799999988876522
Q ss_pred CccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHH
Q 043901 217 DKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVK 296 (331)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~ 296 (331)
+.++..|.||||+|+..|+.++++
T Consensus 131 --------------------------------------------------------~~~~~~g~t~l~~A~~~~~~~~~~ 154 (162)
T 1ihb_A 131 --------------------------------------------------------GHRNHKGDTACDLARLYGRNEVVS 154 (162)
T ss_dssp --------------------------------------------------------TCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred --------------------------------------------------------CCcCCCCCcHHHHHHHcCCHHHHH
Confidence 345668999999999999999999
Q ss_pred HHHhhCCcc
Q 043901 297 KILDTFPVA 305 (331)
Q Consensus 297 ~Ll~~~~~~ 305 (331)
+|++ .|+|
T Consensus 155 ~Ll~-~GAd 162 (162)
T 1ihb_A 155 LMQA-NGAG 162 (162)
T ss_dssp HHHH-TC--
T ss_pred HHHH-hCCC
Confidence 9999 6775
|
| >3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=207.02 Aligned_cols=160 Identities=17% Similarity=0.155 Sum_probs=145.5
Q ss_pred CCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHH
Q 043901 57 GGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAI 136 (331)
Q Consensus 57 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~ 136 (331)
.|.||||+|+..|+.+++++|++.+++ ++..|..|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~ 77 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP---QLLGKGRESALSLAC 77 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCC-cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC---CCcCCCCCcHHHHHH
Confidence 589999999999999999999999987 9999999999999999999999999999999998 999999999999999
Q ss_pred hcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCC
Q 043901 137 SGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKND 216 (331)
Q Consensus 137 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (331)
..|+.+++++|++.|++ ++.+|..|.||||+|+..++ .++++.|+..+.+.
T Consensus 78 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~g~~~--------------------- 128 (167)
T 3v31_A 78 SKGYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNH-------VKCVKMLLESGADP--------------------- 128 (167)
T ss_dssp HHTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTC-------HHHHHHHHHTTCCT---------------------
T ss_pred HcCCHHHHHHHHHCCCC-CCcCCCCCCCHHHHHHHcCC-------HHHHHHHHHcCCCC---------------------
Confidence 99999999999999998 99999999999999999998 78888888776542
Q ss_pred CccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHH
Q 043901 217 DKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVK 296 (331)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~ 296 (331)
+.++..|.||||+|+..|+.++++
T Consensus 129 --------------------------------------------------------~~~~~~g~t~l~~A~~~~~~~~~~ 152 (167)
T 3v31_A 129 --------------------------------------------------------TIETDSGYNSMDLAVALGYRSVQQ 152 (167)
T ss_dssp --------------------------------------------------------TCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred --------------------------------------------------------CCcCCCCCCHHHHHHHcCcHHHHH
Confidence 234567999999999999999999
Q ss_pred HHHhhCCccc
Q 043901 297 KILDTFPVAM 306 (331)
Q Consensus 297 ~Ll~~~~~~~ 306 (331)
+|+++ +.++
T Consensus 153 ~L~~~-~~~~ 161 (167)
T 3v31_A 153 VIESH-LLKL 161 (167)
T ss_dssp HHHHH-HHHH
T ss_pred HHHHH-HHHH
Confidence 99984 5443
|
| >2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-31 Score=214.45 Aligned_cols=129 Identities=16% Similarity=0.091 Sum_probs=87.4
Q ss_pred ceec-cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCc
Q 043901 52 LYIR-LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGET 130 (331)
Q Consensus 52 ~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t 130 (331)
.+.+ ..|.||||+|+..|+.+++++|++.+++ ++..|..|.||||+|+..|+.+++++|++.|+++ +.++..|.|
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t 103 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDK-LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV---NTKDFSGKT 103 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT---TCCCTTSCC
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccc-cccccccCccHHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCCCc
Confidence 3444 6677777777777777777777776665 6666777777777777777777777777777766 666677777
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhh
Q 043901 131 ILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYY 192 (331)
Q Consensus 131 ~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~ 192 (331)
|||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..++ .++++.|+..+
T Consensus 104 ~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~g 157 (192)
T 2rfm_A 104 PLMWSIIFGYSEMSYFLLEHGAN-VNDRNLEGETPLIVASKYGR-------SEIVKKLLELG 157 (192)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTC-------HHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCC-------HHHHHHHHHCC
Confidence 77777777777777777776666 66666666666666666665 45666555544
|
| >2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.1e-31 Score=213.02 Aligned_cols=99 Identities=19% Similarity=0.121 Sum_probs=63.2
Q ss_pred ccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCcc
Q 043901 85 ISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLT 164 (331)
Q Consensus 85 ~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t 164 (331)
+|.+|..|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|+..|+.+++++|++.|++ ++.+|..|.|
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t 103 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL---EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN-VNTKDFSGKT 103 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTSCC
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc---ccccccCccHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCc
Confidence 4455666666666666666666666666666665 66666666666666666666666666666665 6666666666
Q ss_pred HhHHHhcCCCcccccccchhHHHHHhhhcc
Q 043901 165 RLHILASKPTAFKRGSRLGLFDRIIHYYKT 194 (331)
Q Consensus 165 ~l~~A~~~~~~~~~~~~~~~~~~li~~~~~ 194 (331)
|||+|+..++ .++++.|+..+.+
T Consensus 104 ~L~~A~~~~~-------~~~v~~Ll~~g~~ 126 (192)
T 2rfm_A 104 PLMWSIIFGY-------SEMSYFLLEHGAN 126 (192)
T ss_dssp HHHHHHHHTC-------HHHHHHHHHTTCC
T ss_pred HHHHHHHcCC-------HHHHHHHHHCCCC
Confidence 6666666665 5666666655443
|
| >4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-31 Score=228.13 Aligned_cols=164 Identities=16% Similarity=0.207 Sum_probs=149.4
Q ss_pred ceec-cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHH-----hcCCHHHHHHHHhcCCCcccccccc
Q 043901 52 LYIR-LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAA-----LHGNMDAFLCLRSFNQAKDNRQCRK 125 (331)
Q Consensus 52 ~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~-----~~~~~~~~~~Ll~~g~~~~~~~~~~ 125 (331)
++.. ..|.||||+|+..|+.+++++|++.|+..++..|..|.||||+|+ ..++.+++++|++.|.+. +..+
T Consensus 104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~---~~~~ 180 (276)
T 4hbd_A 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNIN---AKAS 180 (276)
T ss_dssp HTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTT---CCCT
T ss_pred CcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCc---cccC
Confidence 5666 899999999999999999999999998559999999999999999 668899999999999988 8889
Q ss_pred CCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHh-hhcccCcCCCCCCC
Q 043901 126 NNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIH-YYKTKGEANDEESP 204 (331)
Q Consensus 126 ~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~-~~~~~~~~~~~~~~ 204 (331)
..|.||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+..++ .++++.|+. .+.+.
T Consensus 181 ~~g~tpLh~A~~~g~~~~v~~Ll~~gad-~n~~d~~G~TpLh~A~~~g~-------~~iv~~Ll~~~gad~--------- 243 (276)
T 4hbd_A 181 QAGQTALMLAVSHGRVDVVKALLACEAD-VNVQDDDGSTALMCACEHGH-------KEIAGLLLAVPSCDI--------- 243 (276)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTC-------HHHHHHHHTSTTCCT---------
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHCCC-------HHHHHHHHhcCCCCC---------
Confidence 9999999999999999999999999998 99999999999999999998 799999887 44432
Q ss_pred cccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHH
Q 043901 205 ECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAIL 284 (331)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh 284 (331)
+.+|..|+||||
T Consensus 244 --------------------------------------------------------------------~~~d~~g~TpL~ 255 (276)
T 4hbd_A 244 --------------------------------------------------------------------SLTDRDGSTALM 255 (276)
T ss_dssp --------------------------------------------------------------------TCCCTTSCCHHH
T ss_pred --------------------------------------------------------------------cCcCCCCCCHHH
Confidence 345678999999
Q ss_pred HHHhcChHHHHHHHHhhCC
Q 043901 285 IAAKMGVAEMVKKILDTFP 303 (331)
Q Consensus 285 ~A~~~g~~~~v~~Ll~~~~ 303 (331)
+|+..|+.+++++|+++.+
T Consensus 256 ~A~~~g~~~iv~~Ll~~~~ 274 (276)
T 4hbd_A 256 VALDAGQSEIASMLYSRMN 274 (276)
T ss_dssp HHHHHTCHHHHHHHHHHCC
T ss_pred HHHHcCCHHHHHHHHhccC
Confidence 9999999999999999654
|
| >2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.7e-30 Score=204.18 Aligned_cols=156 Identities=18% Similarity=0.175 Sum_probs=145.3
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHH
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSA 135 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A 135 (331)
..+.|+|+.|+..|+.+++++|++.|++ ++.+|..|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|
T Consensus 12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A 87 (169)
T 2y1l_E 12 SDLGKKLLEAARAGRDDEVRILMANGAD-VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV---NAVDHAGMTPLRLA 87 (169)
T ss_dssp -CHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHH
T ss_pred CcccchHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CccCCCCCCHHHHH
Confidence 5678999999999999999999999988 9999999999999999999999999999999998 99999999999999
Q ss_pred HhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCC
Q 043901 136 ISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKN 215 (331)
Q Consensus 136 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (331)
+..|+.+++++|++.|++ ++.+|..|.||||+|+..++ .++++.|+..+.+.
T Consensus 88 ~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~g~~~-------------------- 139 (169)
T 2y1l_E 88 ALFGHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGH-------LEIVEVLLKNGADV-------------------- 139 (169)
T ss_dssp HHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTC-------HHHHHHHHHTTCCT--------------------
T ss_pred HHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCC-------HHHHHHHHHcCCCC--------------------
Confidence 999999999999999998 99999999999999999998 79999998876542
Q ss_pred CCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHH
Q 043901 216 DDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMV 295 (331)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v 295 (331)
+.+|..|.||||+|+..|+.+++
T Consensus 140 ---------------------------------------------------------~~~~~~g~t~l~~A~~~~~~~~~ 162 (169)
T 2y1l_E 140 ---------------------------------------------------------NAQDKFGKTAFDISIDNGNEDLA 162 (169)
T ss_dssp ---------------------------------------------------------TCCCTTSCCHHHHHHHTTCHHHH
T ss_pred ---------------------------------------------------------CCcCCCCCCHHHHHHHhCCHHHH
Confidence 23466899999999999999999
Q ss_pred HHHHh
Q 043901 296 KKILD 300 (331)
Q Consensus 296 ~~Ll~ 300 (331)
++|++
T Consensus 163 ~~L~~ 167 (169)
T 2y1l_E 163 EILQK 167 (169)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 99998
|
| >3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-30 Score=206.20 Aligned_cols=168 Identities=14% Similarity=0.034 Sum_probs=153.0
Q ss_pred CCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHH
Q 043901 57 GGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAI 136 (331)
Q Consensus 57 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~ 136 (331)
.+.++||.|+..|+.+++++|++.++.+++..|..|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|+
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~ 80 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI---NVMNRGDDTPLHLAA 80 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC---CCcCCCCCCHHHHHH
Confidence 46799999999999999999999977679999999999999999999999999999999998 999999999999999
Q ss_pred hcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCC
Q 043901 137 SGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKND 216 (331)
Q Consensus 137 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (331)
..|+.+++++|++.|++ ++.+|..|.||||+|+..++ .++++.|+..+.+.
T Consensus 81 ~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~-------~~~v~~Ll~~ga~~--------------------- 131 (179)
T 3f6q_A 81 SHGHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQ-------DQVAEDLVANGALV--------------------- 131 (179)
T ss_dssp HTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTC-------HHHHHHHHHTTCCS---------------------
T ss_pred HcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCC-------HHHHHHHHHCCCCc---------------------
Confidence 99999999999999998 99999999999999999998 79999998877553
Q ss_pred CccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHH
Q 043901 217 DKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVK 296 (331)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~ 296 (331)
+.+|..|.||||+|+..++.++++
T Consensus 132 --------------------------------------------------------~~~~~~g~tpl~~A~~~~~~~~~~ 155 (179)
T 3f6q_A 132 --------------------------------------------------------SICNKYGEMPVDKAKAPLRELLRE 155 (179)
T ss_dssp --------------------------------------------------------SBCCTTSCCGGGGSCHHHHHHHHH
T ss_pred --------------------------------------------------------chhccCCCCcHHHHHHHHHHHHHH
Confidence 344668999999999999999999
Q ss_pred HHHhhCCccccccccCC
Q 043901 297 KILDTFPVAMQDMDSEK 313 (331)
Q Consensus 297 ~Ll~~~~~~~~~~d~~g 313 (331)
+|++ .|++++..+..+
T Consensus 156 ~L~~-~g~~~~~~~~~~ 171 (179)
T 3f6q_A 156 RAEK-MGQNLNRIPYKD 171 (179)
T ss_dssp HHHH-TTCCCSCBCCCC
T ss_pred HHHH-hhcCcccCCccc
Confidence 9999 799998876554
|
| >3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.5e-30 Score=202.23 Aligned_cols=151 Identities=15% Similarity=0.060 Sum_probs=140.7
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHh
Q 043901 91 DSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILA 170 (331)
Q Consensus 91 ~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~ 170 (331)
.|.||||.|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|++.|++ ++..+..|.||||+|+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~ 77 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVI---NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-PQLLGKGRESALSLAC 77 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCc---CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCcCCCCCcHHHHHH
Confidence 5889999999999999999999999988 99999999999999999999999999999988 9999999999999999
Q ss_pred cCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCc
Q 043901 171 SKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLK 250 (331)
Q Consensus 171 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~ 250 (331)
..++ .++++.|+..+.+.
T Consensus 78 ~~~~-------~~~v~~Ll~~g~~~------------------------------------------------------- 95 (167)
T 3v31_A 78 SKGY-------TDIVKMLLDCGVDV------------------------------------------------------- 95 (167)
T ss_dssp HHTC-------HHHHHHHHHHTCCT-------------------------------------------------------
T ss_pred HcCC-------HHHHHHHHHCCCCC-------------------------------------------------------
Confidence 9998 79999998876542
Q ss_pred cchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHHHcCcccccc
Q 043901 251 NFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYK 330 (331)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~ 330 (331)
+.++..|+||||+|+..|+.+++++|++ .|++++.+|..|+||+|+|+.+|+.++++
T Consensus 96 ----------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~ 152 (167)
T 3v31_A 96 ----------------------NEYDWNGGTPLLYAVHGNHVKCVKMLLE-SGADPTIETDSGYNSMDLAVALGYRSVQQ 152 (167)
T ss_dssp ----------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred ----------------------CcCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCcHHHHH
Confidence 3346679999999999999999999999 79999999999999999999999999886
|
| >1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-29 Score=197.11 Aligned_cols=124 Identities=19% Similarity=0.161 Sum_probs=116.2
Q ss_pred CCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHh
Q 043901 58 GNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAIS 137 (331)
Q Consensus 58 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~ 137 (331)
..||||.|+..|+.+++++|++.|++ ++ .+..|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|+.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~-~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~ 76 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAP-FT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR---DARTKVDRTPLHMAAS 76 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCC-CC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT---TCCCTTCCCHHHHHHH
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCC-CC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHH
Confidence 46899999999999999999999986 65 5888999999999999999999999999998 9999999999999999
Q ss_pred cCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcc
Q 043901 138 GEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKT 194 (331)
Q Consensus 138 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~ 194 (331)
.|+.+++++|++.|++ ++.+|..|.||||+|+..++ .++++.|+..+.+
T Consensus 77 ~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~ga~ 125 (153)
T 1awc_B 77 EGHANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNH-------QEVVELLIKYGAD 125 (153)
T ss_dssp HTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTC-------HHHHHHHHHTTCC
T ss_pred cChHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCC-------HHHHHHHHHcCCC
Confidence 9999999999999998 99999999999999999998 7999999887654
|
| >1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-29 Score=197.41 Aligned_cols=154 Identities=13% Similarity=0.145 Sum_probs=140.9
Q ss_pred CCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHh
Q 043901 58 GNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAIS 137 (331)
Q Consensus 58 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~ 137 (331)
|.||||+|+..|+.+++++|++..+..++..|..|.||||+ +..|+.+++++|++.|+++ +.+|..|.||||+|+.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~ 77 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP---NVQDTSGTSPVHDAAR 77 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHH
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC---CCcCCCCCCHHHHHHH
Confidence 56899999999999999999998444599999999999999 9999999999999999998 9999999999999999
Q ss_pred cCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCC
Q 043901 138 GEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDD 217 (331)
Q Consensus 138 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (331)
.|+.+++++|++.|++ ++.+|..|.||||+|+..++ .++++.|+.. .+.
T Consensus 78 ~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~-~~~---------------------- 126 (156)
T 1bd8_A 78 TGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGH-------TAVVSFLAAE-SDL---------------------- 126 (156)
T ss_dssp TTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTC-------HHHHHHHHTT-SCT----------------------
T ss_pred cCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHhCh-------HHHHHHHHhc-cCC----------------------
Confidence 9999999999999988 99999999999999999998 7899888766 321
Q ss_pred ccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHH
Q 043901 218 KCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKK 297 (331)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~ 297 (331)
+.+|..|.||||+|+..|+.+++++
T Consensus 127 -------------------------------------------------------~~~~~~g~t~l~~A~~~~~~~~v~~ 151 (156)
T 1bd8_A 127 -------------------------------------------------------HRRDARGLTPLELALQRGAQDLVDI 151 (156)
T ss_dssp -------------------------------------------------------TCCCTTSCCHHHHHHHSCCHHHHHH
T ss_pred -------------------------------------------------------CCcCCCCCCHHHHHHHcCcHHHHHH
Confidence 3456689999999999999999999
Q ss_pred HHhh
Q 043901 298 ILDT 301 (331)
Q Consensus 298 Ll~~ 301 (331)
|+++
T Consensus 152 Ll~~ 155 (156)
T 1bd8_A 152 LQGH 155 (156)
T ss_dssp HHTT
T ss_pred HHhh
Confidence 9973
|
| >3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-29 Score=199.01 Aligned_cols=161 Identities=14% Similarity=0.112 Sum_probs=148.1
Q ss_pred chhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhc
Q 043901 2 EVNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASK 80 (331)
Q Consensus 2 ~~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~ 80 (331)
+..+|+.|+..|+.+.++.+++..+. .++.. ..|.||||+|+..|+.+++++|++.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~-----------------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 58 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDN-----------------------LVNKPDERGFTPLIWASAFGEIETVRFLLEW 58 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSG-----------------------GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcc-----------------------cccCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 34689999999999999999988543 24455 7899999999999999999999999
Q ss_pred CcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccC
Q 043901 81 DRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNE 160 (331)
Q Consensus 81 ~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~ 160 (331)
|++ ++..|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|++.|++ ++.+|.
T Consensus 59 g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~ 133 (172)
T 3v30_A 59 GAD-PHILAKERESALSLASTGGYTDIVGLLLERDVDI---NIYDWNGGTPLLYAVRGNHVKCVEALLARGAD-LTTEAD 133 (172)
T ss_dssp TCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCT
T ss_pred CCC-chhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCC
Confidence 998 9999999999999999999999999999999998 99999999999999999999999999999998 999999
Q ss_pred CCccHhHHHhcCCCcccccccchhHHHHHhhhcccCc
Q 043901 161 NGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGE 197 (331)
Q Consensus 161 ~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~ 197 (331)
.|.||||+|+..++ .++++.|+..+.+...
T Consensus 134 ~g~t~l~~A~~~~~-------~~~~~~L~~~~~~~~~ 163 (172)
T 3v30_A 134 SGYTPMDLAVALGY-------RKVQQVIENHILKLFQ 163 (172)
T ss_dssp TSCCHHHHHHHHTC-------HHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHhCc-------HHHHHHHHHHHHHHhc
Confidence 99999999999998 7999999998887653
|
| >1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7.9e-29 Score=195.50 Aligned_cols=155 Identities=17% Similarity=0.149 Sum_probs=143.2
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcC
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKD 81 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 81 (331)
.++|+.|+..|+.+.++.+++.... ++.. ..|.||||+|+. |+.+++++|++.|
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~~~~------------------------~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g 60 (162)
T 1ihb_A 6 GNELASAAARGDLEQLTSLLQNNVN------------------------VNAQNGFGRTALQVMKL-GNPEIARRLLLRG 60 (162)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTSCCC------------------------TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTT
T ss_pred hhHHHHHHHcCCHHHHHHHHhCCCC------------------------ccccCccCccHHHHHHc-CcHHHHHHHHHcC
Confidence 3689999999999999999976432 3445 789999999999 9999999999999
Q ss_pred cccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCC
Q 043901 82 RELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNEN 161 (331)
Q Consensus 82 ~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~ 161 (331)
++ ++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.|++.++.++..
T Consensus 61 ~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~ 136 (162)
T 1ihb_A 61 AN-PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV---NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHK 136 (162)
T ss_dssp CC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTT
T ss_pred CC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCC
Confidence 88 9999999999999999999999999999999998 9999999999999999999999999999999867999999
Q ss_pred CccHhHHHhcCCCcccccccchhHHHHHhhhc
Q 043901 162 GLTRLHILASKPTAFKRGSRLGLFDRIIHYYK 193 (331)
Q Consensus 162 g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~ 193 (331)
|.||||+|+..++ .++++.|+..++
T Consensus 137 g~t~l~~A~~~~~-------~~~~~~Ll~~GA 161 (162)
T 1ihb_A 137 GDTACDLARLYGR-------NEVVSLMQANGA 161 (162)
T ss_dssp SCCHHHHHHHTTC-------HHHHHHHHHTC-
T ss_pred CCcHHHHHHHcCC-------HHHHHHHHHhCC
Confidence 9999999999999 799999998875
|
| >3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-29 Score=199.22 Aligned_cols=159 Identities=14% Similarity=0.093 Sum_probs=144.0
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHH
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSA 135 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A 135 (331)
..|.||||.|+..|+.+++++|++.++..++..+..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|
T Consensus 6 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A 82 (165)
T 3twr_A 6 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV---HAKDKGGLVPLHNA 82 (165)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHH
T ss_pred chhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC---CccCCCCCCHHHHH
Confidence 567899999999999999999999777668888999999999999999999999999999998 99999999999999
Q ss_pred HhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCC
Q 043901 136 ISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKN 215 (331)
Q Consensus 136 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (331)
+..|+.+++++|++.|++ ++.+|..|.||||+|+..++ .++++.|+..+.+.
T Consensus 83 ~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~-------~~~v~~Ll~~ga~~-------------------- 134 (165)
T 3twr_A 83 CSYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGK-------YEICKLLLQHGADP-------------------- 134 (165)
T ss_dssp HHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTC-------HHHHHHHHHTTCCT--------------------
T ss_pred HHcCcHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCC-------HHHHHHHHHcCCCC--------------------
Confidence 999999999999999998 99999999999999999998 79999998876542
Q ss_pred CCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHH
Q 043901 216 DDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMV 295 (331)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v 295 (331)
+.+|..|.||||+|+. |+.+++
T Consensus 135 ---------------------------------------------------------~~~~~~g~t~l~~a~~-~~~~i~ 156 (165)
T 3twr_A 135 ---------------------------------------------------------TKKNRDGNTPLDLVKD-GDTDIQ 156 (165)
T ss_dssp ---------------------------------------------------------TCCCTTSCCTGGGSCT-TCHHHH
T ss_pred ---------------------------------------------------------cccCCCCCChhHhHhc-CChHHH
Confidence 3446689999999877 899999
Q ss_pred HHHHhhCCc
Q 043901 296 KKILDTFPV 304 (331)
Q Consensus 296 ~~Ll~~~~~ 304 (331)
++|++ .|+
T Consensus 157 ~~L~~-~gA 164 (165)
T 3twr_A 157 DLLRG-DAA 164 (165)
T ss_dssp HHHHT-C--
T ss_pred HHHhh-ccc
Confidence 99998 454
|
| >2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-28 Score=193.77 Aligned_cols=153 Identities=19% Similarity=0.165 Sum_probs=142.3
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcC
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKD 81 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 81 (331)
..+|+.|++.|+.+.++.+++...+ ++.. ..|.||||+|+..|+.+++++|++.|
T Consensus 15 ~~~l~~A~~~g~~~~v~~Ll~~g~~------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 70 (169)
T 2y1l_E 15 GKKLLEAARAGRDDEVRILMANGAD------------------------VNAEDASGWTPLHLAAFNGHLEIVEVLLKNG 70 (169)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCC------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred cchHHHHHHcCCHHHHHHHHHCCCC------------------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 4689999999999999999987432 3445 78999999999999999999999999
Q ss_pred cccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCC
Q 043901 82 RELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNEN 161 (331)
Q Consensus 82 ~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~ 161 (331)
++ ++..|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..
T Consensus 71 ~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~ 145 (169)
T 2y1l_E 71 AD-VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADV---NANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD-VNAQDKF 145 (169)
T ss_dssp CC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTT
T ss_pred CC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCC
Confidence 88 9999999999999999999999999999999998 99999999999999999999999999999998 9999999
Q ss_pred CccHhHHHhcCCCcccccccchhHHHHHhh
Q 043901 162 GLTRLHILASKPTAFKRGSRLGLFDRIIHY 191 (331)
Q Consensus 162 g~t~l~~A~~~~~~~~~~~~~~~~~~li~~ 191 (331)
|.||+|+|+..++ .++++.|++.
T Consensus 146 g~t~l~~A~~~~~-------~~~~~~L~~~ 168 (169)
T 2y1l_E 146 GKTAFDISIDNGN-------EDLAEILQKL 168 (169)
T ss_dssp SCCHHHHHHHTTC-------HHHHHHHHTC
T ss_pred CCCHHHHHHHhCC-------HHHHHHHHHc
Confidence 9999999999998 7999888764
|
| >1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-28 Score=190.34 Aligned_cols=149 Identities=17% Similarity=0.110 Sum_probs=137.8
Q ss_pred hHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceeccCCCchhhhhhccCCHHHHHHHHhcCcc
Q 043901 4 NSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIRLGGNHGRKYIKPLGNEAMCHCTASKDRE 83 (331)
Q Consensus 4 ~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~ 83 (331)
++|+.|++.|+.+.++.+++..+. .+....|.||||+|+..|+.+++++|++.|++
T Consensus 4 ~~L~~A~~~g~~~~v~~Ll~~g~~------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 59 (153)
T 1awc_B 4 KKLLEAARAGQDDEVRILMANGAP------------------------FTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59 (153)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTCC------------------------CCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCC
T ss_pred HHHHHHHHcCCHHHHHHHHHcCCC------------------------CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 679999999999999999987542 22236789999999999999999999999998
Q ss_pred cccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCc
Q 043901 84 LISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGL 163 (331)
Q Consensus 84 ~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~ 163 (331)
++.+|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|.
T Consensus 60 -~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~ 134 (153)
T 1awc_B 60 -RDARTKVDRTPLHMAASEGHANIVEVLLKHGADV---NAKDMLKMTALHWATEHNHQEVVELLIKYGAD-VHTQSKFCK 134 (153)
T ss_dssp -TTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSC
T ss_pred -CCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCC
Confidence 9999999999999999999999999999999998 99999999999999999999999999999998 999999999
Q ss_pred cHhHHHhcCCCcccccccchhHHHH
Q 043901 164 TRLHILASKPTAFKRGSRLGLFDRI 188 (331)
Q Consensus 164 t~l~~A~~~~~~~~~~~~~~~~~~l 188 (331)
||+|+|+..++ .++++.|
T Consensus 135 t~l~~A~~~~~-------~~i~~~L 152 (153)
T 1awc_B 135 TAFDISIDNGN-------EDLAEIL 152 (153)
T ss_dssp CHHHHHHHTTC-------HHHHHHH
T ss_pred CHHHHHHHcCC-------HHHHHHh
Confidence 99999999998 6777654
|
| >1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B | Back alignment and structure |
|---|
Probab=99.96 E-value=5.9e-30 Score=215.26 Aligned_cols=179 Identities=16% Similarity=0.092 Sum_probs=129.8
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHH
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSA 135 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A 135 (331)
..|.||||.|+..|+.++++.|+++|.+ ++.. ..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~-~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~d~~g~t~L~~A 77 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMR-VKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDP---SLPNDEGITALHNA 77 (239)
T ss_dssp ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC---CCCCTTSCCHHHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCC-cccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHH
Confidence 3589999999999999999999999987 7754 67899999999999999999999999998 99999999999999
Q ss_pred HhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCC
Q 043901 136 ISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKN 215 (331)
Q Consensus 136 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (331)
+..|+.+++++|++.|++ ++.+|..|+||||+|+..++ .++++.|+..+.+..
T Consensus 78 ~~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpL~~A~~~~~-------~~~v~~Ll~~ga~~~------------------- 130 (239)
T 1ycs_B 78 VCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNN-------VQVCKFLVESGAAVF------------------- 130 (239)
T ss_dssp HHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTC-------HHHHHHHHHTTCCTT-------------------
T ss_pred HHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCC-------HHHHHHHHHcCCCcc-------------------
Confidence 999999999999999998 99999999999999999999 799999998876543
Q ss_pred CCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCC-chHHHHH--HhcChH
Q 043901 216 DDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRN-ETAILIA--AKMGVA 292 (331)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g-~tpLh~A--~~~g~~ 292 (331)
.++..| +||||+| +..|+.
T Consensus 131 ----------------------------------------------------------~~~~~~~~t~l~~a~~~~~g~~ 152 (239)
T 1ycs_B 131 ----------------------------------------------------------AMTYSDMQTAADKCEEMEEGYT 152 (239)
T ss_dssp ----------------------------------------------------------CCCSSSCCCHHHHCCSSSTTCC
T ss_pred ----------------------------------------------------------eecCCCCcchHHHHHHhhhccH
Confidence 223344 4999999 888999
Q ss_pred HHHHHHHhhCCcccccc---------ccCCCcHHHHHHHcCc
Q 043901 293 EMVKKILDTFPVAMQDM---------DSEKKNLVLLAVENRQ 325 (331)
Q Consensus 293 ~~v~~Ll~~~~~~~~~~---------d~~g~t~l~~A~~~~~ 325 (331)
+++++|++ .+++++.. +..+++|.++|.+.|.
T Consensus 153 ~~~~~Ll~-~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 153 QCSQFLYG-VQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp CHHHHHHH-HHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred HHHHHHHH-hhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence 99999999 59988776 5568888888887775
|
| >2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-30 Score=228.95 Aligned_cols=226 Identities=10% Similarity=0.019 Sum_probs=148.1
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCcc----cccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCcccccc--ccCCCC
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDRE----LISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQC--RKNNGE 129 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~----~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~--~~~~g~ 129 (331)
..|.||||+|+..|+.++|++|+++|++ .++..+ .||||+|+..|+.+++++|+++|+++ +. +|..|.
T Consensus 126 ~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~---~TpLh~Aa~~G~~eiv~~Ll~~ga~~---~~~~~d~~g~ 199 (376)
T 2aja_A 126 AENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN---YHAFRLAAENGHLHVLNRLCELAPTE---ATAMIQAENY 199 (376)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH---HHHHHHHHHTTCHHHHHHHHHSCGGG---HHHHHHHHHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC---CCHHHHHHHCCCHHHHHHHHHcCCcc---chhccCCCCC
Confidence 5678999999999999999999999963 244333 89999999999999999999999987 66 888899
Q ss_pred cHHHHHH-hcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccc
Q 043901 130 TILHSAI-SGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNR 208 (331)
Q Consensus 130 t~Lh~A~-~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~ 208 (331)
||||+|+ ..|+.+++++|++.|+ .|.||||+|+..|+ .++++.|+..+.+..... .+.+
T Consensus 200 TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~-------~evv~lL~~~ga~~~~~~---~~l~-- 259 (376)
T 2aja_A 200 YAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFEYGE-------KYVNPFIARHVNRLKEMH---DAFK-- 259 (376)
T ss_dssp HHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTTTTT-------TTHHHHHHHHHHHHHHHH---TTTT--
T ss_pred CHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHHCCC-------HHHHHHHHhcCccccccc---HHHH--
Confidence 9999999 9999999999998653 38999999999999 799999998887664311 1111
Q ss_pred cccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhh---------hhccCCCC
Q 043901 209 SISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEK---------KDQQSGRN 279 (331)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~---------~~~~~~~g 279 (331)
.+...+...... ......+...+..++.. .+ ....+.+++|.+ .......+
T Consensus 260 -~A~~~g~~~vv~--~~~~~~~~~~~~~li~~----~~-------------~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~ 319 (376)
T 2aja_A 260 -LSNPDGVFDLVT--KSECLQGFYMLRNLIRR----ND-------------EVLLDDIRFLLSIPGIKALAPTATIPGDA 319 (376)
T ss_dssp -TTSSSSCCCCSS--HHHHHHHHHHHHHHHHH----CC-------------GGGHHHHHHHHTSTTTGGGSSCCSSTTCC
T ss_pred -HHHHCCChhhhc--HHhhhhhHHHHHHHHHc----ch-------------hhHHHHHHHHHhChhhhhhhccCCCCCCc
Confidence 233333332221 01111222222222221 11 111222232222 12334468
Q ss_pred chHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHHHcCccccccC
Q 043901 280 ETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 280 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
.||||+|+..|+.++|++|++ .| ..++..|+|++++|...|+.+++++
T Consensus 320 ~~~L~~A~~~g~~e~v~lLl~-~~---~v~~~~~~~~~~~~~~~~~~~~~~~ 367 (376)
T 2aja_A 320 NELLRLALRLGNQGACALLLS-IP---SVLALTKANNYYINETGGRLDLRAV 367 (376)
T ss_dssp CHHHHHHHHHTCTTHHHHHTT-SH---HHHHSCC------------------
T ss_pred cHHHHHHHHcCcHHHHHHHHc-Ch---HHHHHHHHhccccccccccccHHHH
Confidence 899999999999999999998 45 5678889999999999999998864
|
| >3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.6e-28 Score=194.49 Aligned_cols=160 Identities=18% Similarity=0.108 Sum_probs=147.8
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcC
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKD 81 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 81 (331)
.++|+.|+..|+.+.++.+++..+. .++.. ..|.||||+|+..|+.+++++|++.|
T Consensus 6 ~~~l~~A~~~g~~~~v~~ll~~~~~-----------------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 62 (179)
T 3f6q_A 6 MDDIFTQCREGNAVAVRLWLDNTEN-----------------------DLNQGDDHGFSPLHWACREGRSAVVEMLIMRG 62 (179)
T ss_dssp -CCHHHHHHHTCHHHHHHHHHCTTS-----------------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHhcCcc-----------------------cccccCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence 4689999999999999999987542 24455 78999999999999999999999999
Q ss_pred cccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCC
Q 043901 82 RELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNEN 161 (331)
Q Consensus 82 ~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~ 161 (331)
++ ++..|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..
T Consensus 63 ~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~ 137 (179)
T 3f6q_A 63 AR-INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI---NAVNEHGNVPLHYACFWGQDQVAEDLVANGAL-VSICNKY 137 (179)
T ss_dssp CC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SSBCCTT
T ss_pred CC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cchhccC
Confidence 98 9999999999999999999999999999999998 99999999999999999999999999999998 9999999
Q ss_pred CccHhHHHhcCCCcccccccchhHHHHHhhhcccCc
Q 043901 162 GLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGE 197 (331)
Q Consensus 162 g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~ 197 (331)
|.||+++|+..++ ..+++.++..+.+...
T Consensus 138 g~tpl~~A~~~~~-------~~~~~~L~~~g~~~~~ 166 (179)
T 3f6q_A 138 GEMPVDKAKAPLR-------ELLRERAEKMGQNLNR 166 (179)
T ss_dssp SCCGGGGSCHHHH-------HHHHHHHHHTTCCCSC
T ss_pred CCCcHHHHHHHHH-------HHHHHHHHHhhcCccc
Confidence 9999999999887 7999999999888764
|
| >1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-29 Score=221.57 Aligned_cols=230 Identities=11% Similarity=0.064 Sum_probs=151.1
Q ss_pred HHH-HHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcCccccccc-----------------CCCCCcHHHHHH
Q 043901 40 LYT-LQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKDRELISVR-----------------NNDSETPLFLAA 100 (331)
Q Consensus 40 ~v~-Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~-----------------d~~g~tpLh~A~ 100 (331)
+++ |++.| .+ ++.. ..|.|+++ |+.+++++|+++|.+ ++.. .....+.+|+|+
T Consensus 34 lv~~ll~~g-a~-i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~ 105 (327)
T 1sw6_A 34 LTSDFLSSP-LK-IMKALPSPVVNDN-----EQKMKLEAFLQRLLF-PEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSF 105 (327)
T ss_dssp CCCSTTTSS-CC-CEECBCCCCCCCH-----HHHHHHHHHHHHHHC--------------------------------CH
T ss_pred hHHHHhhCC-cc-cccCCCCCCcccC-----chhHHHHHHHHhccC-CccccchHhhhcccccccccccCCccchhHHHH
Confidence 788 99998 44 5555 89999988 999999999999866 4431 111223357888
Q ss_pred hcCCHHHHHHHHhcCCCcccccc-ccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCccccc
Q 043901 101 LHGNMDAFLCLRSFNQAKDNRQC-RKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRG 179 (331)
Q Consensus 101 ~~~~~~~~~~Ll~~g~~~~~~~~-~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~ 179 (331)
..+..+++++|++.|+++ +. +|..|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..++.
T Consensus 106 ~~~~~~~~~~l~~~g~dv---n~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad-~n~~d~~g~TpLh~A~~~g~~---- 177 (327)
T 1sw6_A 106 DSLLQEVNDAFPNTQLNL---NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNN---- 177 (327)
T ss_dssp HHHHHHHHHHCTTSCCCS---CSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTBCCTTCCCHHHHHHHSSHH----
T ss_pred HhhHHHHHHHHHhcCCCc---ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhccc----
Confidence 888889999999999999 99 899999999999999999999999999998 999999999999999998751
Q ss_pred ccchhHHHHHhhh-cccC-cCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhh
Q 043901 180 SRLGLFDRIIHYY-KTKG-EANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISII 257 (331)
Q Consensus 180 ~~~~~~~~li~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~ 257 (331)
...+.+..++..+ .++. .+..+.+|+|. ++.... ...+...+.++++..
T Consensus 178 ~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~---A~~~~~----------~~g~~~~v~~Ll~~~---------------- 228 (327)
T 1sw6_A 178 YDSGTFEALLDYLYPCLILEDSMNRTILHH---IIITSG----------MTGCSAAAKYYLDIL---------------- 228 (327)
T ss_dssp HHTTCHHHHHHHHGGGGGEECTTCCCHHHH---HHHHHT----------STTCHHHHHHHHHHH----------------
T ss_pred ccHHHHHHHHHhhhccccCCCCCCCCHHHH---HHHHcc----------ccccHHHHHHHHHHH----------------
Confidence 0025566666655 2222 24445555443 110000 000111112111100
Q ss_pred hhhchhhHHHHHh----------------hhhccCCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHH
Q 043901 258 PYIKKVQGLKFME----------------KKDQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAV 321 (331)
Q Consensus 258 ~~~~~~~~~~~l~----------------~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~ 321 (331)
..++. ..+.++..|.||||.|+. +++|++. +++.+|..|+||||+|+
T Consensus 229 --------~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~---~~n~~d~~G~TpLh~A~ 291 (327)
T 1sw6_A 229 --------MGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN---MLNAQDSNGDTCLNIAA 291 (327)
T ss_dssp --------HHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHH---TTTCCCTTSCCHHHHHH
T ss_pred --------HHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh---CCCCCCCCCCCHHHHHH
Confidence 00000 004456677777777775 6777774 68899999999999999
Q ss_pred HcCccccccC
Q 043901 322 ENRQTSIYKL 331 (331)
Q Consensus 322 ~~~~~~iv~l 331 (331)
++|+.++|++
T Consensus 292 ~~g~~~~v~~ 301 (327)
T 1sw6_A 292 RLGNISIVDA 301 (327)
T ss_dssp HHCCHHHHHH
T ss_pred HcCCHHHHHH
Confidence 9999999873
|
| >3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.9e-28 Score=191.17 Aligned_cols=154 Identities=12% Similarity=0.069 Sum_probs=139.4
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcC
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKD 81 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 81 (331)
.++|+.|++.|+.+.++.+++..+. ..... ..|.||||+|+..|+.+++++|++.|
T Consensus 9 ~~~l~~A~~~g~~~~v~~ll~~~~~-----------------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 65 (165)
T 3twr_A 9 DRQLLEAAKAGDVETVKKLCTVQSV-----------------------NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG 65 (165)
T ss_dssp HHHHHHHHHHTCHHHHHHHCCTTTT-----------------------TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred hHHHHHHHHhCCHHHHHHHHHcCCC-----------------------CccccccCCCCHHHHHHHcChHHHHHHHHhcC
Confidence 4689999999999999999876432 13334 67899999999999999999999999
Q ss_pred cccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCC
Q 043901 82 RELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNEN 161 (331)
Q Consensus 82 ~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~ 161 (331)
++ ++.+|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..
T Consensus 66 ~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~ 140 (165)
T 3twr_A 66 AD-VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVV---NVADLWKFTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRD 140 (165)
T ss_dssp CC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTT
T ss_pred CC-CCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CcccCCC
Confidence 98 9999999999999999999999999999999999 99999999999999999999999999999998 9999999
Q ss_pred CccHhHHHhcCCCcccccccchhHHHHHhhh
Q 043901 162 GLTRLHILASKPTAFKRGSRLGLFDRIIHYY 192 (331)
Q Consensus 162 g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~ 192 (331)
|.||+|+|.. ++ .++++.|+..+
T Consensus 141 g~t~l~~a~~-~~-------~~i~~~L~~~g 163 (165)
T 3twr_A 141 GNTPLDLVKD-GD-------TDIQDLLRGDA 163 (165)
T ss_dssp SCCTGGGSCT-TC-------HHHHHHHHTC-
T ss_pred CCChhHhHhc-CC-------hHHHHHHhhcc
Confidence 9999999877 65 68888887654
|
| >1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-27 Score=186.98 Aligned_cols=152 Identities=16% Similarity=0.175 Sum_probs=139.4
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcC
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKD 81 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 81 (331)
.++|+.|+..|+.+.++.+++. .. ...+.. ..|.||||+ +..|+.+++++|++.|
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~-~~----------------------~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g 58 (156)
T 1bd8_A 3 GDRLSGAAARGDVQEVRRLLHR-EL----------------------VHPDALNRFGKTALQV-MMFGSTAIALELLKQG 58 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHT-TC----------------------CCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTT
T ss_pred chHHHHHHHhCCHHHHHHHHHh-hC----------------------cCccccCCCCCcHHHH-HHcCCHHHHHHHHHCC
Confidence 4789999999999999999987 21 123445 789999999 9999999999999999
Q ss_pred cccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCC
Q 043901 82 RELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNEN 161 (331)
Q Consensus 82 ~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~ 161 (331)
++ ++.+|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|++. ++ ++.+|..
T Consensus 59 ~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~-~~~~~~~ 132 (156)
T 1bd8_A 59 AS-PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV---NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SD-LHRRDAR 132 (156)
T ss_dssp CC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS---CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SC-TTCCCTT
T ss_pred CC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC---CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cC-CCCcCCC
Confidence 98 9999999999999999999999999999999998 99999999999999999999999999999 65 9999999
Q ss_pred CccHhHHHhcCCCcccccccchhHHHHHhh
Q 043901 162 GLTRLHILASKPTAFKRGSRLGLFDRIIHY 191 (331)
Q Consensus 162 g~t~l~~A~~~~~~~~~~~~~~~~~~li~~ 191 (331)
|.||||+|+..++ .++++.|+++
T Consensus 133 g~t~l~~A~~~~~-------~~~v~~Ll~~ 155 (156)
T 1bd8_A 133 GLTPLELALQRGA-------QDLVDILQGH 155 (156)
T ss_dssp SCCHHHHHHHSCC-------HHHHHHHHTT
T ss_pred CCCHHHHHHHcCc-------HHHHHHHHhh
Confidence 9999999999999 7999888753
|
| >2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-30 Score=216.49 Aligned_cols=142 Identities=14% Similarity=0.077 Sum_probs=128.2
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcC
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKD 81 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 81 (331)
..+|+.|+..|+.+.++.+++.+.+ ++.. ..|.||||+|+..|+.+++++|++.|
T Consensus 22 ~t~L~~A~~~g~~~~v~~Ll~~g~~------------------------~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g 77 (229)
T 2vge_A 22 LVLLLDAALTGELEVVQQAVKEMND------------------------PSQPNEEGITALHNAICGANYSIVDFLITAG 77 (229)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHSSC------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred hHHHHHHHHcCCHHHHHHHHhcCCC------------------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 4578999999999999988876432 4455 88999999999999999999999999
Q ss_pred cccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCcccccccc-CCCCcHHHHH--HhcCCHHHHHHHHHhCCcccccc
Q 043901 82 RELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRK-NNGETILHSA--ISGEYFSIAFQIMRAYPDLVNSV 158 (331)
Q Consensus 82 ~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~-~~g~t~Lh~A--~~~~~~~~~~~Ll~~~~~~~~~~ 158 (331)
++ ++.+|..|.||||+|+..|+.+++++|++.|+++ +.++ ..|.||||+| +..|+.+++++|++.|++ ++.+
T Consensus 78 a~-~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~---~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~-~~~~ 152 (229)
T 2vge_A 78 AN-VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAI---FATTLSDGATAFEKCDPYREGYADCATYLADVEQS-MGLM 152 (229)
T ss_dssp CC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT---TCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH-TTTS
T ss_pred CC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc---ccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC-cccc
Confidence 98 9999999999999999999999999999999998 8876 6999999999 999999999999999998 9999
Q ss_pred cCCCccHhHHHhcCC
Q 043901 159 NENGLTRLHILASKP 173 (331)
Q Consensus 159 ~~~g~t~l~~A~~~~ 173 (331)
|..|.||++.++...
T Consensus 153 ~~~~~~~l~~~~~~~ 167 (229)
T 2vge_A 153 NSGAVYALWDYSAEF 167 (229)
T ss_dssp GGGEEEESSCBCCSS
T ss_pred cCCchHHHHHHhhcc
Confidence 999999999665543
|
| >3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-27 Score=192.80 Aligned_cols=155 Identities=12% Similarity=0.075 Sum_probs=137.0
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCH----HHHHHH
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNE----AMCHCT 77 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~----~~v~~L 77 (331)
.+.||.|++.|+.+.++.++.... .... ..|+||||+|+..|+. +++++|
T Consensus 7 ~~~l~~Aa~~g~~~~~~~l~~~~~-------------------------~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~L 61 (186)
T 3t8k_A 7 YRTVSAAAMLGTYEDFLELFEKGY-------------------------EDKESVLKSNILYDVLRNNNDEARYKISMFL 61 (186)
T ss_dssp CSSHHHHHHHSCHHHHHHHHHHSS-------------------------SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHH
T ss_pred ccHHHHHHHcCCHHHHHHHHhcCc-------------------------ccccccCCCCHHHHHHHcCCcchHHHHHHHH
Confidence 367999999999999999988642 2233 6799999999999985 599999
Q ss_pred HhcCcccccccCCCCCcHHHHHHhcCC------HHHHHHHHhcCCCccccccccCCCC-cHHHHHHhcC-----CHHHHH
Q 043901 78 ASKDRELISVRNNDSETPLFLAALHGN------MDAFLCLRSFNQAKDNRQCRKNNGE-TILHSAISGE-----YFSIAF 145 (331)
Q Consensus 78 l~~~~~~~~~~d~~g~tpLh~A~~~~~------~~~~~~Ll~~g~~~~~~~~~~~~g~-t~Lh~A~~~~-----~~~~~~ 145 (331)
++.|++ +|.+|..|.||||+|+..++ .+++++|+++|+++ +.+|..|. ||||+|+..+ ..++++
T Consensus 62 l~~Gad-vn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadi---n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~ 137 (186)
T 3t8k_A 62 INKGAD-IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADI---TALYKPYKIVVFKNIFNYFVDENEMIPLYK 137 (186)
T ss_dssp HHTTCC-SSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCS---SSCBGGGTBCTTGGGGGCCSCHHHHHHHHH
T ss_pred HHCCCC-CCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCC---CccCCCcCchHHHHHHHcCCChhhHHHHHH
Confidence 999998 99999999999999999987 57899999999999 99999999 9999999944 467999
Q ss_pred HHHH-hCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcc
Q 043901 146 QIMR-AYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKT 194 (331)
Q Consensus 146 ~Ll~-~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~ 194 (331)
+|++ .|++ ++.+|..|.||||+|+..++ .++++.|..+...
T Consensus 138 ~Ll~~~gad-~~~~d~~G~TpL~~A~~~~~-------~~~v~~L~~~~~~ 179 (186)
T 3t8k_A 138 LIFSQSGLQ-LLIKDKWGLTALEFVKRCQK-------PIALKMMEDYIKK 179 (186)
T ss_dssp HHHTSTTCC-TTCCCTTSCCHHHHHHTTTC-------HHHHHHHHHHHHH
T ss_pred HHHHhcCCC-CcccCCCCCCHHHHHHHcCC-------HHHHHHHHHHHHH
Confidence 9999 8988 99999999999999999998 6888888776544
|
| >1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B | Back alignment and structure |
|---|
Probab=99.94 E-value=8.3e-29 Score=208.24 Aligned_cols=159 Identities=13% Similarity=-0.012 Sum_probs=120.1
Q ss_pred chhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceeccCCCchhhhhhccCCHHHHHHHHhcC
Q 043901 2 EVNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIRLGGNHGRKYIKPLGNEAMCHCTASKD 81 (331)
Q Consensus 2 ~~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 81 (331)
+..+|+.|++.|+.+.++.+++.+.+ ++....|.||||+|+..|+.+++++|++.|
T Consensus 5 g~t~L~~a~~~~~~~~~~~ll~~g~~------------------------~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g 60 (239)
T 1ycs_B 5 GQVSLPPGKRTNLRKTGSERIAHGMR------------------------VKFNPLPLALLLDSSLEGEFDLVQRIIYEV 60 (239)
T ss_dssp --------------------------------------------------------CHHHHHHHHHHTCHHHHHHHTSTT
T ss_pred ccccCchhhhhhhHHHHHHHhccCCC------------------------cccCchhhHHHHHHHHcCCHHHHHHHHHcC
Confidence 34678888888888888887776432 344467899999999999999999999999
Q ss_pred cccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCC
Q 043901 82 RELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNEN 161 (331)
Q Consensus 82 ~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~ 161 (331)
++ ++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|++ ++.++..
T Consensus 61 ~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~---~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~ 135 (239)
T 1ycs_B 61 DD-PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV---NAADSDGWTPLHCAASCNNVQVCKFLVESGAA-VFAMTYS 135 (239)
T ss_dssp SS-CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT---TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCSS
T ss_pred CC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cceecCC
Confidence 97 9999999999999999999999999999999998 99999999999999999999999999999998 9999887
Q ss_pred Cc-cHhHHH--hcCCCcccccccchhHHHHHhhhcccC
Q 043901 162 GL-TRLHIL--ASKPTAFKRGSRLGLFDRIIHYYKTKG 196 (331)
Q Consensus 162 g~-t~l~~A--~~~~~~~~~~~~~~~~~~li~~~~~~~ 196 (331)
|. ||+|+| +..++ .++++.|+..+.+..
T Consensus 136 ~~~t~l~~a~~~~~g~-------~~~~~~Ll~~~a~~~ 166 (239)
T 1ycs_B 136 DMQTAADKCEEMEEGY-------TQCSQFLYGVQEKMG 166 (239)
T ss_dssp SCCCHHHHCCSSSTTC-------CCHHHHHHHHHHHTT
T ss_pred CCcchHHHHHHhhhcc-------HHHHHHHHHhhhccc
Confidence 77 999999 77777 799999998887755
|
| >1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.4e-27 Score=180.07 Aligned_cols=130 Identities=9% Similarity=0.072 Sum_probs=123.2
Q ss_pred ceec-cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCC-CC
Q 043901 52 LYIR-LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNN-GE 129 (331)
Q Consensus 52 ~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~-g~ 129 (331)
++.. ..|.||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+. |+.+++++|++.|+++ +.++.. |.
T Consensus 5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~---~~~~~~~g~ 79 (136)
T 1d9s_A 5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGAD-PNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP---NCADPATLT 79 (136)
T ss_dssp CSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS---SCCBTTTTB
T ss_pred ccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC---CCcCCCCCC
Confidence 4556 8899999999999999999999999988 99999999999999999 9999999999999998 999999 99
Q ss_pred cHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcc
Q 043901 130 TILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKT 194 (331)
Q Consensus 130 t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~ 194 (331)
||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..++ .++++.|+..+.+
T Consensus 80 t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~-------~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 80 RPVHDAAREGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQGH-------RDIARYLHAATGD 136 (136)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTCCC-CCCCSSSSSCHHHHHHHHTC-------HHHHHHHHHHHCC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCC-------HHHHHHHHHcCCC
Confidence 999999999999999999999998 99999999999999999998 7999999987753
|
| >3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-27 Score=190.07 Aligned_cols=166 Identities=10% Similarity=0.001 Sum_probs=135.4
Q ss_pred CCchhhhhhccCCHHHHHHHHhcCcccccccC-CCCCcHHHHHHhcCCH----HHHHHHHhcCCCccccccccCCCCcHH
Q 043901 58 GNHGRKYIKPLGNEAMCHCTASKDRELISVRN-NDSETPLFLAALHGNM----DAFLCLRSFNQAKDNRQCRKNNGETIL 132 (331)
Q Consensus 58 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A~~~~~~----~~~~~Ll~~g~~~~~~~~~~~~g~t~L 132 (331)
+.++||.|+..|+.+.++.++..+. +..+ ..|.||||+|+.+|+. +++++|++.|+++ +.+|..|+|||
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~---~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv---n~~d~~g~TpL 79 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGY---EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI---KSRTKEGTTLF 79 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSS---SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS---SCCCTTCCCTH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCc---ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC---CCCCCCCCcHH
Confidence 4689999999999999999998664 3444 6799999999999975 5999999999999 99999999999
Q ss_pred HHHHhcCC------HHHHHHHHHhCCcccccccCCCc-cHhHHHhcCCCcccccccchhHHHHHh-hhcccCcCCCCCCC
Q 043901 133 HSAISGEY------FSIAFQIMRAYPDLVNSVNENGL-TRLHILASKPTAFKRGSRLGLFDRIIH-YYKTKGEANDEESP 204 (331)
Q Consensus 133 h~A~~~~~------~~~~~~Ll~~~~~~~~~~~~~g~-t~l~~A~~~~~~~~~~~~~~~~~~li~-~~~~~~~~~~~~~~ 204 (331)
|+|+..++ .+++++|+++|++ ++.+|..|. ||||+|+..+.. .....++++.|+. .+.++
T Consensus 80 h~a~~~~~~~~~~~~~iv~~Ll~~Gad-in~~d~~g~ttpLh~A~~~~~~--~~~~~~iv~~Ll~~~gad~--------- 147 (186)
T 3t8k_A 80 FPLFQGGGNDITGTTELCKIFLEKGAD-ITALYKPYKIVVFKNIFNYFVD--ENEMIPLYKLIFSQSGLQL--------- 147 (186)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCC-SSSCBGGGTBCTTGGGGGCCSC--HHHHHHHHHHHHTSTTCCT---------
T ss_pred HHHHHcCCcchhhHHHHHHHHHHCCCC-CCccCCCcCchHHHHHHHcCCC--hhhHHHHHHHHHHhcCCCC---------
Confidence 99999987 6899999999998 999999999 999999996541 0111345555555 44332
Q ss_pred cccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHH
Q 043901 205 ECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAIL 284 (331)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh 284 (331)
+.+|..|.||||
T Consensus 148 --------------------------------------------------------------------~~~d~~G~TpL~ 159 (186)
T 3t8k_A 148 --------------------------------------------------------------------LIKDKWGLTALE 159 (186)
T ss_dssp --------------------------------------------------------------------TCCCTTSCCHHH
T ss_pred --------------------------------------------------------------------cccCCCCCCHHH
Confidence 456778999999
Q ss_pred HHHhcChHHHHHHHHhhCCccccccc
Q 043901 285 IAAKMGVAEMVKKILDTFPVAMQDMD 310 (331)
Q Consensus 285 ~A~~~g~~~~v~~Ll~~~~~~~~~~d 310 (331)
+|++.|+.++|++|.+ +....+.++
T Consensus 160 ~A~~~~~~~~v~~L~~-~~~~~~~~~ 184 (186)
T 3t8k_A 160 FVKRCQKPIALKMMED-YIKKYNLKE 184 (186)
T ss_dssp HHHTTTCHHHHHHHHH-HHHHHTCCC
T ss_pred HHHHcCCHHHHHHHHH-HHHHHhccc
Confidence 9999999999999987 455555444
|
| >1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A | Back alignment and structure |
|---|
Probab=99.94 E-value=9.4e-27 Score=182.56 Aligned_cols=141 Identities=9% Similarity=0.072 Sum_probs=81.0
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCc-HHHH
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGET-ILHS 134 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t-~Lh~ 134 (331)
..|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+ .|+.+++++|++.|+++ +.++..|.| |||+
T Consensus 10 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~---~~~d~~g~ttpL~~ 84 (156)
T 1bi7_B 10 EPSADWLATAAARGRVEEVRALLEAGAN-PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP---NCADPATLTRPVHD 84 (156)
T ss_dssp CCSTTHHHHHHHHTCHHHHHHHHTTTCC-TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC---CCCCTTTCCCHHHH
T ss_pred ccchHHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC---CCcCCCCCcHHHHH
Confidence 4556666666666666666666666555 6666666666666653 56666666666666655 566666665 6666
Q ss_pred HHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccC
Q 043901 135 AISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSK 214 (331)
Q Consensus 135 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (331)
|+..|+.+++++|+++|++ ++.
T Consensus 85 A~~~~~~~~v~~Ll~~ga~-~~~--------------------------------------------------------- 106 (156)
T 1bi7_B 85 AAREGFLDTLVVLHRAGAR-LDV--------------------------------------------------------- 106 (156)
T ss_dssp HHHHTCHHHHHHHHHHTCC-SSC---------------------------------------------------------
T ss_pred HHHCCCHHHHHHHHHcCCC-Ccc---------------------------------------------------------
Confidence 6666666666666665544 222
Q ss_pred CCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHH
Q 043901 215 NDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEM 294 (331)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~ 294 (331)
+|..|+||||+|+..|+.++
T Consensus 107 ------------------------------------------------------------~d~~g~tpl~~A~~~~~~~~ 126 (156)
T 1bi7_B 107 ------------------------------------------------------------RDAWGRLPVDLAEELGHRDV 126 (156)
T ss_dssp ------------------------------------------------------------CCTTCCCHHHHHHHHTCHHH
T ss_pred ------------------------------------------------------------cCCCCCCHHHHHHHhCHHHH
Confidence 24468889999999999999
Q ss_pred HHHHHhhCCccccccccCCCcHHHHH
Q 043901 295 VKKILDTFPVAMQDMDSEKKNLVLLA 320 (331)
Q Consensus 295 v~~Ll~~~~~~~~~~d~~g~t~l~~A 320 (331)
+++|++ .|++++.+|..|.||.+-+
T Consensus 127 v~~Ll~-~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 127 ARYLRA-AAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HHHHSS-CC-----------------
T ss_pred HHHHHH-cCCCCCccCcCcCcccccC
Confidence 999998 6999999999999988744
|
| >2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-28 Score=219.89 Aligned_cols=176 Identities=9% Similarity=0.013 Sum_probs=144.7
Q ss_pred CCCchhhhhhccCCHHHHHHHHhcCccc--ccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHH
Q 043901 57 GGNHGRKYIKPLGNEAMCHCTASKDREL--ISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHS 134 (331)
Q Consensus 57 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~--~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~ 134 (331)
+++||||+|+..|+.+++++|++.|+.. .+..+..|.||||+|+.+|+.+++++|+++|+++...+..+.+ .||||+
T Consensus 91 ~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~ 169 (376)
T 2aja_A 91 KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRL 169 (376)
T ss_dssp CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHH
T ss_pred CcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHH
Confidence 3569999999999999999999998731 2234556889999999999999999999999863101222233 899999
Q ss_pred HHhcCCHHHHHHHHHhCCccccc--ccCCCccHhHHHh-cCCCcccccccchhHHHHHhhhcccCcCCCCCCCccccccc
Q 043901 135 AISGEYFSIAFQIMRAYPDLVNS--VNENGLTRLHILA-SKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSIS 211 (331)
Q Consensus 135 A~~~~~~~~~~~Ll~~~~~~~~~--~~~~g~t~l~~A~-~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~ 211 (331)
|+..|+.+++++|+++|++ ++. .|..|.||||+|+ ..|+ .++++.|+..+.
T Consensus 170 Aa~~G~~eiv~~Ll~~ga~-~~~~~~d~~g~TpL~~Aa~~~G~-------~eiv~~Ll~~ga------------------ 223 (376)
T 2aja_A 170 AAENGHLHVLNRLCELAPT-EATAMIQAENYYAFRWAAVGRGH-------HNVINFLLDCPV------------------ 223 (376)
T ss_dssp HHHTTCHHHHHHHHHSCGG-GHHHHHHHHHHHHHHHHHSTTCC-------HHHHHHHTTSHH------------------
T ss_pred HHHCCCHHHHHHHHHcCCc-cchhccCCCCCCHHHHHHHHCCC-------HHHHHHHHhCCC------------------
Confidence 9999999999999999988 777 8889999999999 9999 799988866431
Q ss_pred ccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcCh
Q 043901 212 FSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGV 291 (331)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~ 291 (331)
.|.||||+|+.+|+
T Consensus 224 ------------------------------------------------------------------~~~taL~~Aa~~g~ 237 (376)
T 2aja_A 224 ------------------------------------------------------------------MLAYAEIHEFEYGE 237 (376)
T ss_dssp ------------------------------------------------------------------HHHHHHHCTTTTTT
T ss_pred ------------------------------------------------------------------ccchHHHHHHHCCC
Confidence 27999999999999
Q ss_pred HHHHHHHHhhCCccccccccCCCcHHHHHHHcCcccccc
Q 043901 292 AEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYK 330 (331)
Q Consensus 292 ~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~ 330 (331)
.+++++|++ .|++++..| ++++.|+.+|+.++++
T Consensus 238 ~evv~lL~~-~ga~~~~~~----~~l~~A~~~g~~~vv~ 271 (376)
T 2aja_A 238 KYVNPFIAR-HVNRLKEMH----DAFKLSNPDGVFDLVT 271 (376)
T ss_dssp TTHHHHHHH-HHHHHHHHH----TTTTTTSSSSCCCCSS
T ss_pred HHHHHHHHh-cCccccccc----HHHHHHHHCCChhhhc
Confidence 999999999 588887654 4788999999998763
|
| >3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-26 Score=192.75 Aligned_cols=112 Identities=18% Similarity=0.129 Sum_probs=106.6
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCcccccccc-CCCCcHHHH
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRK-NNGETILHS 134 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~-~~g~t~Lh~ 134 (331)
..|.||||+|+..|+.+++++|++ +.+ +|.+|..|.||||+|+..|+.+++++|+++|+++ +.++ ..|.||||+
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~---~~~~~~~g~t~L~~ 117 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE-DRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL---DHRDMRGGLTALHM 117 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT-TCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT---TCCCSSSCCCHHHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc-CCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC---CcCCCCCCCCHHHH
Confidence 578999999999999999999999 776 9999999999999999999999999999999999 8888 789999999
Q ss_pred HHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCC
Q 043901 135 AISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKP 173 (331)
Q Consensus 135 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~ 173 (331)
|+..|+.+++++|+++|++ ++.+|..|.||||+|+..+
T Consensus 118 A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~A~~~~ 155 (244)
T 3ui2_A 118 AAGYVRPEVVEALVELGAD-IEVEDERGLTALELAREIL 155 (244)
T ss_dssp HHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHHH
Confidence 9999999999999999998 9999999999999998754
|
| >1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-26 Score=174.95 Aligned_cols=132 Identities=12% Similarity=0.046 Sum_probs=121.3
Q ss_pred cccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCC-C
Q 043901 84 LISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNEN-G 162 (331)
Q Consensus 84 ~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-g 162 (331)
+++..|..|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|+. ++.+++++|++.|++ ++.+|.. |
T Consensus 4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~~g 78 (136)
T 1d9s_A 4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADP---NALNRFGRRPIQVMMM-GSAQVAELLLLHGAE-PNCADPATL 78 (136)
T ss_dssp CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC-SSCCBTTTT
T ss_pred CccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc---CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC-CCCcCCCCC
Confidence 38999999999999999999999999999999998 9999999999999999 999999999999998 9999999 9
Q ss_pred ccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhch
Q 043901 163 LTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALP 242 (331)
Q Consensus 163 ~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 242 (331)
.||||+|+..++ .++++.|+..+.+.
T Consensus 79 ~t~L~~A~~~~~-------~~~v~~Ll~~ga~~----------------------------------------------- 104 (136)
T 1d9s_A 79 TRPVHDAAREGF-------LDTLVVLHRAGARL----------------------------------------------- 104 (136)
T ss_dssp BCHHHHHHHHTC-------HHHHHHHHHTCCCC-----------------------------------------------
T ss_pred CCHHHHHHHcCC-------HHHHHHHHHcCCCC-----------------------------------------------
Confidence 999999999998 79999998876543
Q ss_pred hhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHHhhCCcc
Q 043901 243 IVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDTFPVA 305 (331)
Q Consensus 243 ~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~ 305 (331)
+.+|..|.||||+|+..|+.+++++|++ .|+|
T Consensus 105 ------------------------------~~~d~~g~tpl~~A~~~~~~~~~~~Ll~-~Gad 136 (136)
T 1d9s_A 105 ------------------------------DVCDAWGRLPVDLAEEQGHRDIARYLHA-ATGD 136 (136)
T ss_dssp ------------------------------CCCSSSSSCHHHHHHHHTCHHHHHHHHH-HHCC
T ss_pred ------------------------------CccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCC
Confidence 2346689999999999999999999999 4764
|
| >3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.7e-26 Score=184.06 Aligned_cols=113 Identities=18% Similarity=0.128 Sum_probs=107.4
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCcccccccc-CCCCcHHHH
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRK-NNGETILHS 134 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~-~~g~t~Lh~ 134 (331)
..|.||||+|+..|+.+++++|++ +.+ ++.+|..|.||||+|+..|+.+++++|++.|+++ +.++ ..|.||||+
T Consensus 42 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~---~~~~~~~g~tpL~~ 116 (183)
T 3deo_A 42 SEYETPWWTAARKADEQALSQLLE-DRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL---DHRDMRGGLTALHM 116 (183)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHTT-TSC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCSSSSCCHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHh-cCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CcCCCCCCCCHHHH
Confidence 578999999999999999999999 776 9999999999999999999999999999999998 8888 889999999
Q ss_pred HHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCC
Q 043901 135 AISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPT 174 (331)
Q Consensus 135 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~ 174 (331)
|+..|+.+++++|+++|++ ++.+|..|+||||+|+..++
T Consensus 117 A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~ 155 (183)
T 3deo_A 117 AAGYVRPEVVEALVELGAD-IEVEDERGLTALELAREILK 155 (183)
T ss_dssp HHHTTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHcCCC-CcCCCCCCCCHHHHHHHhcc
Confidence 9999999999999999998 99999999999999988654
|
| >2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C | Back alignment and structure |
|---|
Probab=99.93 E-value=5.6e-26 Score=173.91 Aligned_cols=125 Identities=18% Similarity=0.166 Sum_probs=118.9
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHH
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSA 135 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A 135 (331)
..|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|
T Consensus 12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~d~~g~t~L~~A 87 (136)
T 2jab_A 12 SDLGKKLLEAARAGQDDEVRILMANGAD-VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV---NAVDAIGFTPLHLA 87 (136)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHH
T ss_pred ccccHHHHHHHHhCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CcCCCCCCCHHHHH
Confidence 6788999999999999999999999988 9999999999999999999999999999999998 99999999999999
Q ss_pred HhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhh
Q 043901 136 ISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYY 192 (331)
Q Consensus 136 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~ 192 (331)
+..|+.+++++|++.|++ ++.+|..|.||||+|+..++ .++++.|++.+
T Consensus 88 ~~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpl~~A~~~~~-------~~~~~~Ll~~G 136 (136)
T 2jab_A 88 AFIGHLEIAEVLLKHGAD-VNAQDKFGKTAFDISIGNGN-------EDLAEILQKLN 136 (136)
T ss_dssp HHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTC-------HHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHcCCC-CcCcCCCCCCHHHHHHHCCC-------HHHHHHHHHcC
Confidence 999999999999999998 99999999999999999998 79999887653
|
| >1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-25 Score=169.14 Aligned_cols=125 Identities=22% Similarity=0.306 Sum_probs=120.2
Q ss_pred CCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHH
Q 043901 57 GGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAI 136 (331)
Q Consensus 57 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~ 136 (331)
+|.||||+|+..|+.+++++|++.+++ ++..|..|.||||+|+..++.+++++|++.|+++ +.++..|.||||+|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~---~~~~~~g~t~l~~A~ 76 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV---NAKDKNGRTPLHLAA 76 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC---cccCCCCCcHHHHHH
Confidence 589999999999999999999999988 9999999999999999999999999999999998 999999999999999
Q ss_pred hcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhc
Q 043901 137 SGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYK 193 (331)
Q Consensus 137 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~ 193 (331)
..++.+++++|++.|++ ++.+|..|.|||++|+..++ .++++.|+..+.
T Consensus 77 ~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~-------~~~~~~Ll~~Ga 125 (126)
T 1n0r_A 77 RNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGH-------LEVVKLLLEAGA 125 (126)
T ss_dssp HTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTC-------HHHHHHHHHHTC
T ss_pred HcChHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCc-------HHHHHHHHHcCC
Confidence 99999999999999998 99999999999999999998 799999998775
|
| >1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4e-25 Score=173.21 Aligned_cols=138 Identities=15% Similarity=0.098 Sum_probs=111.3
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcC
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKD 81 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 81 (331)
.++||.|+..|+.+.++.+++.... ++.. ..|.||||+|+ .|+.+++++|++.|
T Consensus 13 ~t~L~~A~~~g~~~~v~~Ll~~g~~------------------------~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g 67 (156)
T 1bi7_B 13 ADWLATAAARGRVEEVRALLEAGAN------------------------PNAPNSYGRRPIQVMM-MGSARVAELLLLHG 67 (156)
T ss_dssp TTHHHHHHHHTCHHHHHHHHTTTCC------------------------TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTT
T ss_pred hHHHHHHHHcCCHHHHHHHHHcCCC------------------------CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcC
Confidence 5789999999999999999986422 4445 78999999986 99999999999999
Q ss_pred cccccccCCCCCc-HHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccC
Q 043901 82 RELISVRNNDSET-PLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNE 160 (331)
Q Consensus 82 ~~~~~~~d~~g~t-pLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~ 160 (331)
++ ++.+|..|.| |||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|++ ++.++.
T Consensus 68 ~~-~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~---~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~-~~~~~~ 142 (156)
T 1bi7_B 68 AE-PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARL---DVRDAWGRLPVDLAEELGHRDVARYLRAAAGG-TRGSNH 142 (156)
T ss_dssp CC-CCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCS---SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------
T ss_pred CC-CCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCC---cccCCCCCCHHHHHHHhCHHHHHHHHHHcCCC-CCccCc
Confidence 88 9999999999 999999999999999999999999 99999999999999999999999999999998 999999
Q ss_pred CCccHhHHHh
Q 043901 161 NGLTRLHILA 170 (331)
Q Consensus 161 ~g~t~l~~A~ 170 (331)
.|.||.+.+.
T Consensus 143 ~g~t~~~~~~ 152 (156)
T 1bi7_B 143 ARIDAAEGPS 152 (156)
T ss_dssp ----------
T ss_pred CcCcccccCC
Confidence 9999988543
|
| >3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-25 Score=171.15 Aligned_cols=114 Identities=17% Similarity=0.149 Sum_probs=110.0
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHH
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSA 135 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A 135 (331)
..|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|
T Consensus 8 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~---~~~~~~g~t~L~~A 83 (137)
T 3c5r_A 8 HRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV---NTTGYQNDSPLHDA 83 (137)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCGGGCCHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc---cCcCCCCCCHHHHH
Confidence 7899999999999999999999999988 9999999999999999999999999999999998 99999999999999
Q ss_pred HhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCC
Q 043901 136 ISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPT 174 (331)
Q Consensus 136 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~ 174 (331)
+..|+.+++++|++.|++ ++.+|..|.||+|+|+..+.
T Consensus 84 ~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~ 121 (137)
T 3c5r_A 84 AKNGHVDIVKLLLSYGAS-RNAVNIFGLRPVDYTDDESM 121 (137)
T ss_dssp HHTTCHHHHHHHHHTTCC-TTCCCTTSCCGGGGCCCHHH
T ss_pred HHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHhhccH
Confidence 999999999999999998 99999999999999987665
|
| >3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A | Back alignment and structure |
|---|
Probab=99.92 E-value=5e-25 Score=165.56 Aligned_cols=112 Identities=15% Similarity=0.088 Sum_probs=105.9
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHH
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSA 135 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A 135 (331)
..|.||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|
T Consensus 5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~d~~g~tpL~~A 80 (123)
T 3aaa_C 5 SMCDKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI---NAPDKHHITPLLSA 80 (123)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHHTTCC-TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT---TCCCTTSCCHHHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCC-cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC---CcCCCCCCCHHHHH
Confidence 4678999999999999999999999987 9999999999999999999999999999999998 99999999999999
Q ss_pred HhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcC
Q 043901 136 ISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASK 172 (331)
Q Consensus 136 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~ 172 (331)
+..|+.+++++|++.|++ ++.+|..|.||+|+|...
T Consensus 81 ~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~ 116 (123)
T 3aaa_C 81 VYEGHVSCVKLLLSKGAD-KTVKGPDGLTAFEATDNQ 116 (123)
T ss_dssp HHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCCH
T ss_pred HHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHhCCH
Confidence 999999999999999998 999999999999999543
|
| >3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-24 Score=166.37 Aligned_cols=84 Identities=20% Similarity=0.221 Sum_probs=65.1
Q ss_pred ccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHh
Q 043901 87 VRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRL 166 (331)
Q Consensus 87 ~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l 166 (331)
.+|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|++.|++ ++.+|..|.|||
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L 80 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP---NVKDHAGWTPLHEACNHGHLKVVELLLQHKAL-VNTTGYQNDSPL 80 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS---CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCGGGCCHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc-ccCcCCCCCCHH
Confidence 56788889999999999999999999888888 88888888999999988999999988888776 555554444444
Q ss_pred HHHhcCCC
Q 043901 167 HILASKPT 174 (331)
Q Consensus 167 ~~A~~~~~ 174 (331)
|+|+..++
T Consensus 81 ~~A~~~~~ 88 (137)
T 3c5r_A 81 HDAAKNGH 88 (137)
T ss_dssp HHHHHTTC
T ss_pred HHHHHcCC
Confidence 44444444
|
| >2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.4e-24 Score=184.66 Aligned_cols=126 Identities=14% Similarity=0.007 Sum_probs=115.8
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCcccccc------cCCCCCcHHHHHHhc---CCHHHHHHHHhcCCCccccccccC
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDRELISV------RNNDSETPLFLAALH---GNMDAFLCLRSFNQAKDNRQCRKN 126 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~------~d~~g~tpLh~A~~~---~~~~~~~~Ll~~g~~~~~~~~~~~ 126 (331)
..+.++|+.|+..|+.+.++.|++.+++ ++. .+..|.||||+|+.. |+.+++++|++.|+++ +.+|.
T Consensus 149 ~~~~~~L~~A~~~g~~~~v~~ll~~g~d-~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv---n~~d~ 224 (301)
T 2b0o_E 149 TPEPQRLWTAICNRDLLSVLEAFANGQD-FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL---DAKAA 224 (301)
T ss_dssp C-CHHHHHHHHHTTCHHHHHHHHHTTCC-TTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT---TCCCT
T ss_pred CchHHHHhhhhhccCHHHHHHHHhcCCc-ccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC---CCCCC
Confidence 3455789999999999999999999988 887 688999999999997 8999999999999998 99999
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhc
Q 043901 127 NGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYK 193 (331)
Q Consensus 127 ~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~ 193 (331)
.|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..++ .++++.|+..+.
T Consensus 225 ~G~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~-------~~iv~~Ll~~ga 283 (301)
T 2b0o_E 225 DGNTALHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHH-------KECEELLEQAQA 283 (301)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCC-CSCCCTTSCCHHHHHHHHTC-------HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCC-------HHHHHHHHHhcC
Confidence 999999999999999999999999998 99999999999999999998 688888776654
|
| >1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=8.9e-24 Score=158.93 Aligned_cols=126 Identities=26% Similarity=0.348 Sum_probs=115.2
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHh
Q 043901 91 DSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILA 170 (331)
Q Consensus 91 ~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~ 170 (331)
+|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..++.+++++|++.|.+ ++.+|..|.||||+|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~ 76 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADV---NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAA 76 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCC---CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCcHHHHHH
Confidence 4899999999999999999999999998 89999999999999999999999999999998 9999999999999999
Q ss_pred cCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCc
Q 043901 171 SKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLK 250 (331)
Q Consensus 171 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~ 250 (331)
..++ .++++.|+..+.+.
T Consensus 77 ~~~~-------~~~~~~Ll~~g~~~------------------------------------------------------- 94 (126)
T 1n0r_A 77 RNGH-------LEVVKLLLEAGADV------------------------------------------------------- 94 (126)
T ss_dssp HTTC-------HHHHHHHHHTTCCT-------------------------------------------------------
T ss_pred HcCh-------HHHHHHHHHcCCCC-------------------------------------------------------
Confidence 9998 79999988776442
Q ss_pred cchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHHhhCCcc
Q 043901 251 NFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDTFPVA 305 (331)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~ 305 (331)
+.+|..|.||||+|+..|+.+++++|++ .|+|
T Consensus 95 ----------------------~~~~~~g~t~l~~A~~~~~~~~~~~Ll~-~Gad 126 (126)
T 1n0r_A 95 ----------------------NAKDKNGRTPLHLAARNGHLEVVKLLLE-AGAY 126 (126)
T ss_dssp ----------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHH-HTCC
T ss_pred ----------------------cccCCCCCCHHHHHHHcCcHHHHHHHHH-cCCC
Confidence 2346679999999999999999999999 5764
|
| >2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-23 Score=160.49 Aligned_cols=121 Identities=17% Similarity=0.128 Sum_probs=111.6
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcC
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKD 81 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 81 (331)
..+||.|+..|+.+.++.+++...+ ++.. ..|.||||+|+..|+.+++++|++.|
T Consensus 15 ~t~l~~A~~~g~~~~v~~Ll~~g~~------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 70 (136)
T 2jab_A 15 GKKLLEAARAGQDDEVRILMANGAD------------------------VNAKDEYGLTPLYLATAHGHLEIVEVLLKNG 70 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCC------------------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred cHHHHHHHHhCCHHHHHHHHHcCCC------------------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 4689999999999999999987432 3445 78999999999999999999999999
Q ss_pred cccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhC
Q 043901 82 RELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAY 151 (331)
Q Consensus 82 ~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~ 151 (331)
++ ++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.|
T Consensus 71 ~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 71 AD-VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADV---NAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp CC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred CC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---cCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 98 9999999999999999999999999999999998 999999999999999999999999999865
|
| >3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-25 Score=179.66 Aligned_cols=120 Identities=17% Similarity=0.101 Sum_probs=100.0
Q ss_pred hhhccCCHHHHHHHHhcCccc----------ccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHH
Q 043901 64 YIKPLGNEAMCHCTASKDREL----------ISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILH 133 (331)
Q Consensus 64 ~A~~~g~~~~v~~Ll~~~~~~----------~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh 133 (331)
.|++.|..+++++|++.+... ....+..|.||||+|+..|+.+++++|++ |+++ +.+|..|.||||
T Consensus 6 ~aa~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~---~~~d~~g~t~L~ 81 (183)
T 3deo_A 6 IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE-DRDV---DAVDENGRTALL 81 (183)
T ss_dssp EEEEEETTTEEEEEEEETTCCCCEEEEGGGSCHHHHHHHHHHHHHHHHTTCHHHHHHHTT-TSCT---TCCCTTSCCHHH
T ss_pred HHHHhcCCchhHHHHHHhCCCCccccchhcccccCCCCCCCHHHHHHHcCCHHHHHHHHh-cCCC---CCcCCCCCCHHH
Confidence 455566666666666543221 11135578999999999999999999999 8888 999999999999
Q ss_pred HHHhcCCHHHHHHHHHhCCccccccc-CCCccHhHHHhcCCCcccccccchhHHHHHhhhccc
Q 043901 134 SAISGEYFSIAFQIMRAYPDLVNSVN-ENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTK 195 (331)
Q Consensus 134 ~A~~~~~~~~~~~Ll~~~~~~~~~~~-~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~ 195 (331)
+|+..|+.+++++|++.|++ ++.++ ..|+||||+|+..++ .++++.|+..+.+.
T Consensus 82 ~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~g~tpL~~A~~~~~-------~~~v~~Ll~~ga~~ 136 (183)
T 3deo_A 82 FVAGLGSDKCVRLLAEAGAD-LDHRDMRGGLTALHMAAGYVR-------PEVVEALVELGADI 136 (183)
T ss_dssp HHHHHTCHHHHHHHHHTTCC-TTCCCSSSSCCHHHHHHHTTC-------HHHHHHHHHHTCCT
T ss_pred HHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCCHHHHHHhcCc-------HHHHHHHHHcCCCC
Confidence 99999999999999999998 88888 899999999999998 79999998887553
|
| >2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=5e-24 Score=184.87 Aligned_cols=142 Identities=15% Similarity=0.037 Sum_probs=119.0
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCccee-c-cCCCchhhhhhcc---CCHHHHHHH
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYI-R-LGGNHGRKYIKPL---GNEAMCHCT 77 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~-~-~~g~t~Lh~A~~~---g~~~~v~~L 77 (331)
.++|+.|+..|+.+.++.++....+... ..... . ..|.||||+|+.. |+.+++++|
T Consensus 152 ~~~L~~A~~~g~~~~v~~ll~~g~d~~~-------------------~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~L 212 (301)
T 2b0o_E 152 PQRLWTAICNRDLLSVLEAFANGQDFGQ-------------------PLPGPDAQAPEELVLHLAVKVANQASLPLVDFI 212 (301)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTS-------------------CEECSSSCSCEECHHHHHHHTCCTTTHHHHHHH
T ss_pred HHHHhhhhhccCHHHHHHHHhcCCcccc-------------------cCCCcccCCCCccHHHHHHHhcccCcHHHHHHH
Confidence 3569999999999999999877654220 00111 3 7899999999987 899999999
Q ss_pred HhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCccccc
Q 043901 78 ASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNS 157 (331)
Q Consensus 78 l~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~ 157 (331)
+++|++ +|.+|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|++.|++
T Consensus 213 l~~gad-vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~---~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~---- 284 (301)
T 2b0o_E 213 IQNGGH-LDAKAADGNTALHYAALYNQPDCLKLLLKGRALV---GTVNEAGETALDIARKKHHKECEELLEQAQAG---- 284 (301)
T ss_dssp HHHSSC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCC---SCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH----
T ss_pred HhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC----
Confidence 999998 9999999999999999999999999999999999 99999999999999999999999999998875
Q ss_pred ccCCCccHhHHHhcCCC
Q 043901 158 VNENGLTRLHILASKPT 174 (331)
Q Consensus 158 ~~~~g~t~l~~A~~~~~ 174 (331)
.|.||||+|+..|+
T Consensus 285 ---~g~tpLh~A~~~g~ 298 (301)
T 2b0o_E 285 ---TFAFPLHVDYSWVI 298 (301)
T ss_dssp ---TTSSCCC-------
T ss_pred ---CCCChhHHHHhcCC
Confidence 68999999999886
|
| >3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-25 Score=187.55 Aligned_cols=135 Identities=16% Similarity=0.076 Sum_probs=116.4
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHH
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSA 135 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A 135 (331)
..+.+++..++..|+.+.+..+...+.+ + +..|.||||+|+..|+.+++++|++ |+++ +.+|..|.||||+|
T Consensus 13 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~-~---~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~---~~~d~~g~t~L~~A 84 (244)
T 3ui2_A 13 GEGAMEYLIEWKDGHSPSWVPSSYIAAD-V---VSEYETPWWTAARKADEQALSQLLE-DRDV---DAVDENGRTALLFV 84 (244)
T ss_dssp TTTEEEEEEEESSCCCCEEEEGGGSCHH-H---HHHHHHHHHHHHTTTCHHHHHHTTT-TCCT---TCBCTTSCBHHHHH
T ss_pred CCCccHHHHHHHcCCCcccccccccccc-c---ccCCCCHHHHHHHcCCHHHHHHHHc-CCCC---CCcCCCCCCHHHHH
Confidence 5677889999999998887776665544 3 3569999999999999999999999 9988 99999999999999
Q ss_pred HhcCCHHHHHHHHHhCCccccccc-CCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCc-CCCCCCCcc
Q 043901 136 ISGEYFSIAFQIMRAYPDLVNSVN-ENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGE-ANDEESPEC 206 (331)
Q Consensus 136 ~~~~~~~~~~~Ll~~~~~~~~~~~-~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~~~~~~~ 206 (331)
+..|+.+++++|+++|++ ++.++ ..|.||||+|+..++ .++++.|+..+.+... +..+.+|+|
T Consensus 85 ~~~g~~~~v~~Ll~~ga~-~~~~~~~~g~t~L~~A~~~g~-------~~~v~~Ll~~ga~~~~~d~~g~t~l~ 149 (244)
T 3ui2_A 85 AGLGSDKCVRLLAEAGAD-LDHRDMRGGLTALHMAAGYVR-------PEVVEALVELGADIEVEDERGLTALE 149 (244)
T ss_dssp HHHTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHHHHTTC-------HHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred HHCCCHHHHHHHHHcCCC-CCcCCCCCCCCHHHHHHHcCC-------HHHHHHHHHCCCCCCCCCCCCCcHHH
Confidence 999999999999999998 88888 889999999999999 7999999999877653 344445544
|
| >3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A | Back alignment and structure |
|---|
Probab=99.90 E-value=6.8e-24 Score=176.06 Aligned_cols=129 Identities=14% Similarity=0.075 Sum_probs=114.1
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhc-CCCccccccccCCCCcHHHH
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSF-NQAKDNRQCRKNNGETILHS 134 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~~~g~t~Lh~ 134 (331)
..|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..|+.+++++|++. |+++ +.+|..|.||||+
T Consensus 71 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~---~~~d~~g~tpL~~ 146 (222)
T 3ehr_A 71 ESIDNPLHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL---NQQNKLGDTALHA 146 (222)
T ss_dssp EEESCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC---CCCCTTSCCHHHH
T ss_pred cccccccccccccCcHHHHHHHHhCCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc---cccCCCCCCHHHH
Confidence 4678999999999999999999999988 999999999999999999999999999999 9988 9999999999999
Q ss_pred HHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccC
Q 043901 135 AISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKG 196 (331)
Q Consensus 135 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~ 196 (331)
|+..|+.+++++|+++|++ ++.+|..|.||||+|+..++ .++++.++..+....
T Consensus 147 A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~-------~~~l~~l~~~~~~~~ 200 (222)
T 3ehr_A 147 AAWKGYADIVQLLLAKGAR-TDLRNIEKKLAFDMATNAAC-------ASLLKKKQGTDAVRT 200 (222)
T ss_dssp HHHHTCHHHHHHHHHHTCC-SCCCCTTSCCHHHHCCSHHH-------HHHHC----------
T ss_pred HHHcCCHHHHHHHHHcCCC-CccccCCCCCHHHHhcchhH-------HHHHHHHhccchhhh
Confidence 9999999999999999998 99999999999999999887 688888877665543
|
| >3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-23 Score=157.02 Aligned_cols=120 Identities=14% Similarity=0.099 Sum_probs=92.0
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHH
Q 043901 89 NNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHI 168 (331)
Q Consensus 89 d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~ 168 (331)
+..|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|+..|+.+++++|++.|++ ++.+
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~---------- 69 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDV---NRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAP---------- 69 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCT---TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC-TTCC----------
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCc---CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCcC----------
Confidence 345677888888888888888888888777 77777888888888888888888888776654 3322
Q ss_pred HhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccC
Q 043901 169 LASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLG 248 (331)
Q Consensus 169 A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~ 248 (331)
T Consensus 70 -------------------------------------------------------------------------------- 69 (123)
T 3aaa_C 70 -------------------------------------------------------------------------------- 69 (123)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHHHcCcccc
Q 043901 249 LKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSI 328 (331)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~i 328 (331)
|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||+|+|...+..++
T Consensus 70 ---------------------------d~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~l 121 (123)
T 3aaa_C 70 ---------------------------DKHHITPLLSAVYEGHVSCVKLLLS-KGADKTVKGPDGLTAFEATDNQAIKAL 121 (123)
T ss_dssp ---------------------------CTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHCCCHHHHHH
T ss_pred ---------------------------CCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHhCCHHHHHH
Confidence 3358888888888888999999998 589999999999999999877766665
Q ss_pred cc
Q 043901 329 YK 330 (331)
Q Consensus 329 v~ 330 (331)
+|
T Consensus 122 l~ 123 (123)
T 3aaa_C 122 LQ 123 (123)
T ss_dssp HC
T ss_pred hC
Confidence 53
|
| >1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=4.8e-23 Score=146.67 Aligned_cols=93 Identities=18% Similarity=0.257 Sum_probs=88.4
Q ss_pred CCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHH
Q 043901 57 GGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAI 136 (331)
Q Consensus 57 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~ 136 (331)
+|+||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~---~~~d~~g~t~l~~A~ 76 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV---NAKDKNGRTPLHLAA 76 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CccCCCCCCHHHHHH
Confidence 589999999999999999999999998 9999999999999999999999999999999999 999999999999999
Q ss_pred hcCCHHHHHHHHHhCCc
Q 043901 137 SGEYFSIAFQIMRAYPD 153 (331)
Q Consensus 137 ~~~~~~~~~~Ll~~~~~ 153 (331)
..|+.+++++|++.|++
T Consensus 77 ~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 77 RNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp HTTCHHHHHHHHHTTCC
T ss_pred HcCCHHHHHHHHHcCCC
Confidence 99999999999998863
|
| >1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-22 Score=172.48 Aligned_cols=140 Identities=14% Similarity=0.057 Sum_probs=121.3
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhcc---CCHHHHHHHH
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPL---GNEAMCHCTA 78 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~---g~~~~v~~Ll 78 (331)
..+|+.|+..|+.+.++.++..+.+... ...++.. ..|.||||+|+.. |+.+++++|+
T Consensus 131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~------------------~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll 192 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAYADGVDLTE------------------KIPLANGHEPDETALHLAVRSVDRTSLHIVDFLV 192 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTS------------------BCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHH
T ss_pred hhhhhhHhhhcccHHHHHHHHhhcchhh------------------hccccccccCCCCcchHHHHhcccchHHHHHHHH
Confidence 4679999999999999999988665321 1113444 7899999999998 8999999999
Q ss_pred hcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccc
Q 043901 79 SKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSV 158 (331)
Q Consensus 79 ~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~ 158 (331)
++|++ +|.+|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|+++|+.
T Consensus 193 ~~ga~-in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~---~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~----- 263 (278)
T 1dcq_A 193 QNSGN-LDKQTGKGSTALHYCCLTDNAECLKLLLRGKASI---EIANESGETPLDIAKRLKHEHCEELLTQALSG----- 263 (278)
T ss_dssp HHCSC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT-----
T ss_pred HCCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----
Confidence 99998 9999999999999999999999999999999999 99999999999999999999999999999875
Q ss_pred cCCCccHhHHHhcCC
Q 043901 159 NENGLTRLHILASKP 173 (331)
Q Consensus 159 ~~~g~t~l~~A~~~~ 173 (331)
.+++|.++...
T Consensus 264 ----~~~~~~~v~~~ 274 (278)
T 1dcq_A 264 ----RFNSHVHVEYE 274 (278)
T ss_dssp ----CCCSSCCCCCC
T ss_pred ----CCCcceeeecc
Confidence 45666555543
|
| >3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.3e-23 Score=171.92 Aligned_cols=139 Identities=19% Similarity=0.119 Sum_probs=111.9
Q ss_pred cccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHh-CCcccccccCCCcc
Q 043901 86 SVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRA-YPDLVNSVNENGLT 164 (331)
Q Consensus 86 ~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~g~t 164 (331)
+..+..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|++. |++ ++.+|..|.|
T Consensus 67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~d~~g~t 142 (222)
T 3ehr_A 67 AEQAESIDNPLHEAAKRGNLSWLRECLDNRVGV---NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE-LNQQNKLGDT 142 (222)
T ss_dssp HHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC-CCCCCTTSCC
T ss_pred cccccccccccccccccCcHHHHHHHHhCCCCc---cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC-ccccCCCCCC
Confidence 345667899999999999999999999999998 99999999999999999999999999999 666 9999999999
Q ss_pred HhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhh
Q 043901 165 RLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIV 244 (331)
Q Consensus 165 ~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 244 (331)
|||+|+..++ .++++.|+..+.+..
T Consensus 143 pL~~A~~~~~-------~~~v~~Ll~~ga~~~------------------------------------------------ 167 (222)
T 3ehr_A 143 ALHAAAWKGY-------ADIVQLLLAKGARTD------------------------------------------------ 167 (222)
T ss_dssp HHHHHHHHTC-------HHHHHHHHHHTCCSC------------------------------------------------
T ss_pred HHHHHHHcCC-------HHHHHHHHHcCCCCc------------------------------------------------
Confidence 9999999998 799999988876533
Q ss_pred hccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCC
Q 043901 245 LGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEK 313 (331)
Q Consensus 245 ~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g 313 (331)
.+|..|.||||+|+..|+.++++.|++ .+++.+..+.+|
T Consensus 168 -----------------------------~~~~~g~t~l~~A~~~~~~~~l~~l~~-~~~~~~~~~~~~ 206 (222)
T 3ehr_A 168 -----------------------------LRNIEKKLAFDMATNAACASLLKKKQG-TDAVRTLSNAED 206 (222)
T ss_dssp -----------------------------CCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred -----------------------------cccCCCCCHHHHhcchhHHHHHHHHhc-cchhhhccchhh
Confidence 346689999999999999999999999 688887777654
|
| >2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-22 Score=149.41 Aligned_cols=106 Identities=23% Similarity=0.202 Sum_probs=100.3
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHH
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSA 135 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A 135 (331)
..|.||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|
T Consensus 7 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~---~~~d~~g~tpl~~A 82 (115)
T 2l6b_A 7 KDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV---NARSKDGNTPEHLA 82 (115)
T ss_dssp CSSCCHHHHHHHHTCHHHHHHHTTTTCC-SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT---TCCCTTCCCTTHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC---cccCCCCCCHHHHH
Confidence 7899999999999999999999999998 9999999999999999999999999999999998 99999999999999
Q ss_pred HhcCCHHHHHHHHHhCCcccccccCCCccHh
Q 043901 136 ISGEYFSIAFQIMRAYPDLVNSVNENGLTRL 166 (331)
Q Consensus 136 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l 166 (331)
+..++.+++++|+++|++ ++.++..|.+|-
T Consensus 83 ~~~~~~~~~~~Ll~~ga~-~n~~~~~~~~~~ 112 (115)
T 2l6b_A 83 KKNGHHEIVKLLDAKGAD-VNARSWGSSHHH 112 (115)
T ss_dssp HTTTCHHHHHHHHTTSSS-HHHHSCCCC---
T ss_pred HHCCCHHHHHHHHHcCCC-CCcCCccccccc
Confidence 999999999999999998 999999998874
|
| >3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-21 Score=171.39 Aligned_cols=125 Identities=14% Similarity=0.041 Sum_probs=118.4
Q ss_pred CCCchhhhhhcc-CCHHHHHHHHhcCcccccccC--CCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHH
Q 043901 57 GGNHGRKYIKPL-GNEAMCHCTASKDRELISVRN--NDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILH 133 (331)
Q Consensus 57 ~g~t~Lh~A~~~-g~~~~v~~Ll~~~~~~~~~~d--~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh 133 (331)
.+.|+||.|+.. |+.+++++|++.|++ ++..+ ..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||
T Consensus 198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gad-vn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv---n~~d~~G~TpLh 273 (368)
T 3jue_A 198 HPGALLFRASGHPPSLPTMADALAHGAD-VNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV---NQADSAGRGPLH 273 (368)
T ss_dssp CHHHHHHHHTSSSCCHHHHHHHHHTTCC-TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHH
T ss_pred CCCcHHHHHHHccCCHHHHHHHHHcCCC-CCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC---CCCCCCCCCHHH
Confidence 456899999999 999999999999998 99988 88999999999999999999999999999 999999999999
Q ss_pred HHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhc
Q 043901 134 SAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYK 193 (331)
Q Consensus 134 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~ 193 (331)
+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..++ .++++.|+....
T Consensus 274 ~A~~~g~~~~v~~LL~~Gad-~~~~d~~G~TpL~~A~~~g~-------~~iv~lLl~~~~ 325 (368)
T 3jue_A 274 HATILGHTGLACLFLKRGAD-LGARDSEGRDPLTIAMETAN-------ADIVTLLRLAKM 325 (368)
T ss_dssp HHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTC-------HHHHHHHHHHHC
T ss_pred HHHHcCcHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHCCC-------HHHHHHHHHcCC
Confidence 99999999999999999998 99999999999999999999 799999887664
|
| >1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=8.9e-21 Score=162.54 Aligned_cols=127 Identities=15% Similarity=0.053 Sum_probs=117.3
Q ss_pred CCCchhhhhhccCCHHHHHHHHhcCccc-----ccccCCCCCcHHHHHHhc---CCHHHHHHHHhcCCCccccccccCCC
Q 043901 57 GGNHGRKYIKPLGNEAMCHCTASKDREL-----ISVRNNDSETPLFLAALH---GNMDAFLCLRSFNQAKDNRQCRKNNG 128 (331)
Q Consensus 57 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-----~~~~d~~g~tpLh~A~~~---~~~~~~~~Ll~~g~~~~~~~~~~~~g 128 (331)
...++|+.|+..|+.+.++.+++.|.+. ++..|..|.||||+|+.. |+.+++++|+++|+++ +.+|..|
T Consensus 129 ~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i---n~~d~~g 205 (278)
T 1dcq_A 129 AKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL---DKQTGKG 205 (278)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT---TCCCTTC
T ss_pred hhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc---cccCCCC
Confidence 3457899999999999999999999873 334488899999999999 8999999999999999 9999999
Q ss_pred CcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcc
Q 043901 129 ETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKT 194 (331)
Q Consensus 129 ~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~ 194 (331)
.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..++ .++++.|+..+..
T Consensus 206 ~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~-------~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 206 STALHYCCLTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKH-------EHCEELLTQALSG 263 (278)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTC-------HHHHHHHHHHHTT
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCC-CCCccCCCCCHHHHHHHcCC-------HHHHHHHHHcCCC
Confidence 9999999999999999999999998 99999999999999999999 7999999998865
|
| >1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-20 Score=134.07 Aligned_cols=92 Identities=27% Similarity=0.365 Sum_probs=86.7
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHh
Q 043901 91 DSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILA 170 (331)
Q Consensus 91 ~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~ 170 (331)
+|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~A~ 76 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADV---NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAA 76 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCC---cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHH
Confidence 4899999999999999999999999998 99999999999999999999999999999998 9999999999999999
Q ss_pred cCCCcccccccchhHHHHHhhhc
Q 043901 171 SKPTAFKRGSRLGLFDRIIHYYK 193 (331)
Q Consensus 171 ~~~~~~~~~~~~~~~~~li~~~~ 193 (331)
..++ .++++.|+..+.
T Consensus 77 ~~~~-------~~~~~~Ll~~ga 92 (93)
T 1n0q_A 77 RNGH-------LEVVKLLLEAGA 92 (93)
T ss_dssp HTTC-------HHHHHHHHHTTC
T ss_pred HcCC-------HHHHHHHHHcCC
Confidence 9998 799999988764
|
| >3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.7e-20 Score=165.09 Aligned_cols=143 Identities=11% Similarity=0.057 Sum_probs=109.9
Q ss_pred hHHHHHHhc-CCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec--cCCCchhhhhhccCCHHHHHHHHhc
Q 043901 4 NSLSKFAVR-GQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR--LGGNHGRKYIKPLGNEAMCHCTASK 80 (331)
Q Consensus 4 ~~L~~a~~~-g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~--~~g~t~Lh~A~~~g~~~~v~~Ll~~ 80 (331)
.+||.|+.. |+.+.++.+++.+.+. .... ..|.||||+|+..|+.+++++|+++
T Consensus 201 t~L~~Aa~~~g~~~~v~~LL~~Gadv-----------------------n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~ 257 (368)
T 3jue_A 201 ALLFRASGHPPSLPTMADALAHGADV-----------------------NWVNGGQDNATPLIQATAANSLLACEFLLQN 257 (368)
T ss_dssp HHHHHHTSSSCCHHHHHHHHHTTCCT-----------------------TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred cHHHHHHHccCCHHHHHHHHHcCCCC-----------------------CccccccCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 378888888 8888888888765431 2222 6799999999999999999999999
Q ss_pred CcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcc--cccc
Q 043901 81 DRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDL--VNSV 158 (331)
Q Consensus 81 ~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~--~~~~ 158 (331)
|++ +|..|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..++.+++++|+..+... ....
T Consensus 258 Gad-vn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~---~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~ 333 (368)
T 3jue_A 258 GAN-VNQADSAGRGPLHHATILGHTGLACLFLKRGADL---GARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQG 333 (368)
T ss_dssp TCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC--------
T ss_pred CCC-CCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCC---CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccc
Confidence 998 9999999999999999999999999999999999 999999999999999999999999999887541 2344
Q ss_pred cCCCccHhHHHhcCC
Q 043901 159 NENGLTRLHILASKP 173 (331)
Q Consensus 159 ~~~g~t~l~~A~~~~ 173 (331)
+..+.|+++.+....
T Consensus 334 ~~~~~t~l~i~~~~~ 348 (368)
T 3jue_A 334 QAGDETYLDIFRDFS 348 (368)
T ss_dssp ---------------
T ss_pred CCCCCCHHHHHHHHH
Confidence 566788888766554
|
| >2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A | Back alignment and structure |
|---|
Probab=99.79 E-value=2.5e-19 Score=131.52 Aligned_cols=89 Identities=15% Similarity=0.177 Sum_probs=85.2
Q ss_pred ccCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHH
Q 043901 55 RLGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHS 134 (331)
Q Consensus 55 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~ 134 (331)
..+|.||||+|+..|+.+++++|++.+++ ++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+
T Consensus 21 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~---~~~d~~g~tpl~~ 96 (110)
T 2zgd_A 21 GSDLGKKLLEAARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV---XAQDKFGKTAFDI 96 (110)
T ss_dssp -CCHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHH
T ss_pred CCccchHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc---cccccCCCcHHHH
Confidence 37899999999999999999999999987 9999999999999999999999999999999998 9999999999999
Q ss_pred HHhcCCHHHHHHH
Q 043901 135 AISGEYFSIAFQI 147 (331)
Q Consensus 135 A~~~~~~~~~~~L 147 (331)
|+..|+.+++++|
T Consensus 97 A~~~~~~~~~~~L 109 (110)
T 2zgd_A 97 SIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHTCHHHHHHH
T ss_pred HHHcCCHHHHHHh
Confidence 9999999999987
|
| >2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.9e-19 Score=130.48 Aligned_cols=100 Identities=22% Similarity=0.192 Sum_probs=94.9
Q ss_pred ccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHh
Q 043901 87 VRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRL 166 (331)
Q Consensus 87 ~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l 166 (331)
.+|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..++.+++++|++.|++ ++.+|..|.|||
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~---~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~tpl 79 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV---NARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-VNARSKDGNTPE 79 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS---SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC-TTCCCTTCCCTT
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCCHH
Confidence 46889999999999999999999999999998 99999999999999999999999999999998 999999999999
Q ss_pred HHHhcCCCcccccccchhHHHHHhhhcccCc
Q 043901 167 HILASKPTAFKRGSRLGLFDRIIHYYKTKGE 197 (331)
Q Consensus 167 ~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~ 197 (331)
|+|+..++ .++++.|+..+.++..
T Consensus 80 ~~A~~~~~-------~~~~~~Ll~~ga~~n~ 103 (115)
T 2l6b_A 80 HLAKKNGH-------HEIVKLLDAKGADVNA 103 (115)
T ss_dssp HHHHTTTC-------HHHHHHHHTTSSSHHH
T ss_pred HHHHHCCC-------HHHHHHHHHcCCCCCc
Confidence 99999998 7999999999888764
|
| >2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A | Back alignment and structure |
|---|
Probab=99.74 E-value=4.9e-18 Score=124.52 Aligned_cols=93 Identities=23% Similarity=0.190 Sum_probs=83.4
Q ss_pred ccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCcc
Q 043901 85 ISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLT 164 (331)
Q Consensus 85 ~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t 164 (331)
....|.+|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|++.|++ ++.+|..|.|
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i---~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~t 92 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADV---AAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKFGKT 92 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCC
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCC---CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccccCCCc
Confidence 5567888999999999999999999999999998 99999999999999999999999999999998 9999999999
Q ss_pred HhHHHhcCCCcccccccchhHHHH
Q 043901 165 RLHILASKPTAFKRGSRLGLFDRI 188 (331)
Q Consensus 165 ~l~~A~~~~~~~~~~~~~~~~~~l 188 (331)
|||+|+..++ .++++.|
T Consensus 93 pl~~A~~~~~-------~~~~~~L 109 (110)
T 2zgd_A 93 AFDISIDNGN-------EDLAEIL 109 (110)
T ss_dssp HHHHHHHHTC-------HHHHHHH
T ss_pred HHHHHHHcCC-------HHHHHHh
Confidence 9999999998 6777654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 331 | ||||
| d1n11a_ | 408 | d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta | 6e-06 | |
| d1n11a_ | 408 | d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta | 6e-04 | |
| d1n11a_ | 408 | d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta | 7e-04 | |
| d1n11a_ | 408 | d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta | 8e-04 | |
| d2ajaa1 | 346 | a.118.24.1 (A:3-348) Hypothetical protein LPG2416 | 2e-05 | |
| d2ajaa1 | 346 | a.118.24.1 (A:3-348) Hypothetical protein LPG2416 | 3e-05 | |
| d1sw6a_ | 301 | d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker | 2e-05 | |
| d1oy3d_ | 255 | d.211.1.1 (D:) Transcription factor inhibitor I-ka | 6e-04 | |
| d1oy3d_ | 255 | d.211.1.1 (D:) Transcription factor inhibitor I-ka | 0.001 | |
| d1wdya_ | 285 | d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas | 7e-04 | |
| d1wdya_ | 285 | d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas | 0.002 | |
| d1s70b_ | 291 | d.211.1.1 (B:) Myosin phosphatase targeting subuni | 0.002 | |
| d1iknd_ | 221 | d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien | 0.002 | |
| d1k1aa_ | 228 | d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: | 0.002 |
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Ankyrin-R species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.4 bits (106), Expect = 6e-06
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 94 TPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPD 153
TPL +A+ G++ +++ Q + ET LH A + +A +++
Sbjct: 2 TPLHVASFMGHLP---IVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK 58
Query: 154 LVNSVNENGLTRLHILASK 172
VN+ ++ T LH A
Sbjct: 59 -VNAKAKDDQTPLHCAARI 76
|
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Ankyrin-R species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.8 bits (89), Expect = 6e-04
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 85 ISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIA 144
+V N ETPL +AA G+ + L N+AK N + + +T LH A + ++
Sbjct: 26 PNVSNVKVETPLHMAARAGHTEVAKYLLQ-NKAKVN--AKAKDDQTPLHCAARIGHTNMV 82
Query: 145 FQIMRAYPD 153
++ +
Sbjct: 83 KLLLENNAN 91
|
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Ankyrin-R species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.8 bits (89), Expect = 7e-04
Identities = 29/169 (17%), Positives = 59/169 (34%), Gaps = 17/169 (10%)
Query: 9 FAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPI--LYIRLGGN---HGRK 63
A + +V + + + T L+ + Q+ P+ + I+ G R
Sbjct: 237 LAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRM 296
Query: 64 YIKPLGNEAMCHCTAS-----KDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAK 118
PL + + + ++ + +PL AA G+ D L N A
Sbjct: 297 GYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK-NGAS 355
Query: 119 DNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPD---LVNSVNENGLT 164
N ++G T L A Y S+ +++ D V +++ ++
Sbjct: 356 PNEVS--SDGTTPLAIAKRLGYISVT-DVLKVVTDETSFVLVSDKHRMS 401
|
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Ankyrin-R species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.4 bits (88), Expect = 8e-04
Identities = 34/247 (13%), Positives = 76/247 (30%), Gaps = 23/247 (9%)
Query: 85 ISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIA 144
+ + TPL +A H N+D ++ + NG T LH A +A
Sbjct: 158 PNAAGKNGLTPLHVAVHHNNLD---IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVA 214
Query: 145 FQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESP 204
+++ N+ + G+T LH+ A + G + + +P
Sbjct: 215 RSLLQYGGS-ANAESVQGVTPLHL------AAQEGHAEMVALLLSKQANGNLGNKSGLTP 267
Query: 205 ECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQ 264
+ + + + L + I +K +
Sbjct: 268 LH---LVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHV-------ASHYGNIKLVKFLL 317
Query: 265 GLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENR 324
+ + G + + AA+ G ++V +L + ++ S+ + +A
Sbjct: 318 QHQADVNAKTKLGY--SPLHQAAQQGHTDIVTLLLK-NGASPNEVSSDGTTPLAIAKRLG 374
Query: 325 QTSIYKL 331
S+ +
Sbjct: 375 YISVTDV 381
|
| >d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Pseudo ankyrin repeat-like family: Pseudo ankyrin repeat domain: Hypothetical protein LPG2416 species: Legionella pneumophila [TaxId: 446]
Score = 43.7 bits (102), Expect = 2e-05
Identities = 11/84 (13%), Positives = 26/84 (30%), Gaps = 1/84 (1%)
Query: 88 RNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQI 147
+ SE F+AA+ G A L + + + + A + + ++
Sbjct: 86 KGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRL 145
Query: 148 MRAYPDLVNS-VNENGLTRLHILA 170
P + + + + A
Sbjct: 146 CELAPTEIMAMIQAENYHAFRLAA 169
|
| >d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Pseudo ankyrin repeat-like family: Pseudo ankyrin repeat domain: Hypothetical protein LPG2416 species: Legionella pneumophila [TaxId: 446]
Score = 43.0 bits (100), Expect = 3e-05
Identities = 26/227 (11%), Positives = 61/227 (26%), Gaps = 16/227 (7%)
Query: 85 ISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIA 144
+ V ++ LAA +G++ L + + A + +
Sbjct: 119 VKVIQAENYQAFRLAAENGHLHVLNRLCE-LAPTEIMAMIQAENYHAFRLAAENGHLHVL 177
Query: 145 FQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGL-----FDRIIHYYKTKGEAN 199
++ P ++ + A+ L + GE
Sbjct: 178 NRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKY 237
Query: 200 DEESPECNRSISFSKND-----DKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKI 254
+ + +D + G F + C F++L L +
Sbjct: 238 VNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRN-----LIRRNDEVLL 292
Query: 255 SIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDT 301
I ++ + G+K + G + +A ++G +L
Sbjct: 293 DDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI 339
|
| >d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Swi6 ankyrin-repeat fragment species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.1 bits (100), Expect = 2e-05
Identities = 19/114 (16%), Positives = 33/114 (28%), Gaps = 1/114 (0%)
Query: 54 IRLGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRS 113
I G G + + K I N+ E+ L
Sbjct: 185 IITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDL 244
Query: 114 FNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLH 167
+ + +NG+T L+ A SI ++ D N++GL +
Sbjct: 245 KWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD-PFIANKSGLRPVD 297
|
| >d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Transcription factor inhibitor I-kappa-B-beta, IKBB species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.5 bits (88), Expect = 6e-04
Identities = 14/65 (21%), Positives = 25/65 (38%)
Query: 84 LISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSI 143
+ D +T L LA +H + L F+ + + + G+T LH A S
Sbjct: 1 VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60
Query: 144 AFQIM 148
++
Sbjct: 61 VEKLY 65
|
| >d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Transcription factor inhibitor I-kappa-B-beta, IKBB species: Mouse (Mus musculus) [TaxId: 10090]
Score = 37.4 bits (85), Expect = 0.001
Identities = 26/222 (11%), Positives = 57/222 (25%), Gaps = 11/222 (4%)
Query: 81 DRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEY 140
E + ++N+ +T L LAA+ G L + + + H A
Sbjct: 34 GHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL---HLACRVRA 90
Query: 141 FSIAFQIMRAYPDLVNSVNENGLTRLHILASKP--TAFKRGSRLGLFDRIIHYYKTKGEA 198
+ A +++ P ++ LT+ S+ + +
Sbjct: 91 HTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWR-L 149
Query: 199 NDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIP 258
E + K + A L L ++ S++
Sbjct: 150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLE 209
Query: 259 YIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILD 300
+ LK + T + A + + +
Sbjct: 210 LL-----LKAGADPTARMYGGRTPLGSALLRPNPILARLLRA 246
|
| >d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: RNase L, 2-5a-dependent ribonuclease species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.4 bits (88), Expect = 7e-04
Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 8/92 (8%)
Query: 59 NHGRKYIKPLGNEAMCHCTASKDRELIS------VRNNDSETPLFLAALHGNMDAFLCLR 112
N GR + + + L+ VR +TPL LA ++ L
Sbjct: 180 NMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 239
Query: 113 SFNQAKDNRQCRKNNGETILHSAISGEYFSIA 144
+ N ++G+T L A+ + IA
Sbjct: 240 EQEHIEIN--DTDSDGKTALLLAVELKLKKIA 269
|
| >d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: RNase L, 2-5a-dependent ribonuclease species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (85), Expect = 0.002
Identities = 22/149 (14%), Positives = 39/149 (26%), Gaps = 35/149 (23%)
Query: 59 NHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAK 118
K +K L K +E T L AA G+++ L A
Sbjct: 115 YGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD 174
Query: 119 DNRQ-----------------------------------CRKNNGETILHSAISGEYFSI 143
N R G+T L A+ ++ +
Sbjct: 175 VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGL 234
Query: 144 AFQIMRAYPDLVNSVNENGLTRLHILASK 172
+++ +N + +G T L +
Sbjct: 235 VQRLLEQEHIEINDTDSDGKTALLLAVEL 263
|
| >d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Myosin phosphatase targeting subunit 1, MYPT1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 37.4 bits (85), Expect = 0.002
Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 4/100 (4%)
Query: 73 MCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETIL 132
+ T L +AA G + L + N + +G T L
Sbjct: 180 DARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI-QARYDVNIKD--YDGWTPL 236
Query: 133 HSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASK 172
H+A ++ D + +VN+ G T +
Sbjct: 237 HAAAHWGKEEACRILVENLCD-MEAVNKVGQTAFDVADED 275
|
| >d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: I-kappa-B-alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.8 bits (83), Expect = 0.002
Identities = 23/211 (10%), Positives = 49/211 (23%), Gaps = 13/211 (6%)
Query: 91 DSETPLFLAALHGNMDAFL-CLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMR 149
D ++ L LA +H + +R + N +T LH A+ IA ++
Sbjct: 1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60
Query: 150 AYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRS 209
A D A +H N C
Sbjct: 61 AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGH---TCLHL 117
Query: 210 ISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFM 269
S AL + + L + ++
Sbjct: 118 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC---------G 168
Query: 270 EKKDQQSGRNETAILIAAKMGVAEMVKKILD 300
++ + + + + + +++
Sbjct: 169 ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQ 199
|
| >d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: bcl-3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.4 bits (82), Expect = 0.002
Identities = 27/226 (11%), Positives = 59/226 (26%), Gaps = 20/226 (8%)
Query: 91 DSETPLFLAALHGNMDAF-LCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMR 149
D +TPL +A + GN+ A + F Q N +T LH A+ S+ ++
Sbjct: 2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 61
Query: 150 AYPDLVNSV----------NENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEAN 199
A + E+ A +
Sbjct: 62 AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE 121
Query: 200 DEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPY 259
+E+ + + P A +++ L
Sbjct: 122 CQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSAL 181
Query: 260 IKKVQG---------LKFMEKKDQQSGRNETAILIAAKMGVAEMVK 296
++ ++ N+T +++A V ++++
Sbjct: 182 HSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 227
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 331 | |||
| d1uoha_ | 223 | 26S proteasome non-ATPase regulatory subunit 10, g | 100.0 | |
| d1oy3d_ | 255 | Transcription factor inhibitor I-kappa-B-beta, IKB | 100.0 | |
| d1n11a_ | 408 | Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2fo1e1 | 277 | Lin-12 {Caenorhabditis elegans [TaxId: 6239]} | 100.0 | |
| d1ixva_ | 229 | 26S proteasome non-ATPase regulatory subunit 10, g | 100.0 | |
| d1iknd_ | 221 | I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606 | 100.0 | |
| d1oy3d_ | 255 | Transcription factor inhibitor I-kappa-B-beta, IKB | 100.0 | |
| d1s70b_ | 291 | Myosin phosphatase targeting subunit 1, MYPT1 {Chi | 100.0 | |
| d1k1aa_ | 228 | bcl-3 {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1ot8a_ | 209 | Neurogenic locus notch receptor domain {Fruit fly | 99.97 | |
| d1n11a_ | 408 | Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1ixva_ | 229 | 26S proteasome non-ATPase regulatory subunit 10, g | 99.97 | |
| d1uoha_ | 223 | 26S proteasome non-ATPase regulatory subunit 10, g | 99.97 | |
| d1wdya_ | 285 | RNase L, 2-5a-dependent ribonuclease {Human (Homo | 99.97 | |
| d1s70b_ | 291 | Myosin phosphatase targeting subunit 1, MYPT1 {Chi | 99.97 | |
| d1ihba_ | 156 | p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606] | 99.96 | |
| d2fo1e1 | 277 | Lin-12 {Caenorhabditis elegans [TaxId: 6239]} | 99.96 | |
| d2ajaa1 | 346 | Hypothetical protein LPG2416 {Legionella pneumophi | 99.96 | |
| d1iknd_ | 221 | I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606 | 99.95 | |
| d1bd8a_ | 156 | Cell cycle inhibitor p19ink4D {Human (Homo sapiens | 99.95 | |
| d1bd8a_ | 156 | Cell cycle inhibitor p19ink4D {Human (Homo sapiens | 99.94 | |
| d1awcb_ | 153 | GA bindinig protein (GABP) beta 1 {Mouse (Mus musc | 99.94 | |
| d1wdya_ | 285 | RNase L, 2-5a-dependent ribonuclease {Human (Homo | 99.94 | |
| d1sw6a_ | 301 | Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch | 99.94 | |
| d1awcb_ | 153 | GA bindinig protein (GABP) beta 1 {Mouse (Mus musc | 99.94 | |
| d1ihba_ | 156 | p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606] | 99.93 | |
| d1myoa_ | 118 | Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116] | 99.93 | |
| d2ajaa1 | 346 | Hypothetical protein LPG2416 {Legionella pneumophi | 99.92 | |
| d1bi7b_ | 125 | Cell cycle inhibitor p16ink4A {Human (Homo sapiens | 99.92 | |
| d1ycsb1 | 130 | 53BP2 {Human (Homo sapiens) [TaxId: 9606]} | 99.91 | |
| d1k1aa_ | 228 | bcl-3 {Human (Homo sapiens) [TaxId: 9606]} | 99.91 | |
| d1dcqa1 | 154 | Pyk2-associated protein beta {Mouse (Mus musculus) | 99.91 | |
| d1ot8a_ | 209 | Neurogenic locus notch receptor domain {Fruit fly | 99.9 | |
| d1myoa_ | 118 | Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116] | 99.9 | |
| d1bi7b_ | 125 | Cell cycle inhibitor p16ink4A {Human (Homo sapiens | 99.89 | |
| d1ycsb1 | 130 | 53BP2 {Human (Homo sapiens) [TaxId: 9606]} | 99.88 | |
| d1dcqa1 | 154 | Pyk2-associated protein beta {Mouse (Mus musculus) | 99.87 | |
| d1sw6a_ | 301 | Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch | 99.86 |
| >d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.7e-38 Score=259.09 Aligned_cols=212 Identities=16% Similarity=0.186 Sum_probs=190.6
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcCcc
Q 043901 5 SLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKDRE 83 (331)
Q Consensus 5 ~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~ 83 (331)
.|+.++..|+.+.++++++..+. .++.+ ..|+||||+|+..|+.+++++|++.+..
T Consensus 6 ~~~~~a~~G~~~~v~~~l~~~~~-----------------------~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~ 62 (223)
T d1uoha_ 6 MVCNLAYSGKLEELKESILADKS-----------------------LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 62 (223)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCGG-----------------------GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC
T ss_pred HHHHHHHhCCHHHHHHHHHhCCC-----------------------cCcCcCCCCCCHHHHHHHhhhhcccccccccccc
Confidence 47889999999999999988643 24455 8899999999999999999999999887
Q ss_pred cccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCc
Q 043901 84 LISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGL 163 (331)
Q Consensus 84 ~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~ 163 (331)
....+..+.++++.++..++.+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|+++|.+ ++.++..|.
T Consensus 63 -~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~---~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d-~~~~~~~~~ 137 (223)
T d1uoha_ 63 -VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQV---NAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYEA 137 (223)
T ss_dssp -SCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSC
T ss_pred -cccccccccccccccccccccchhHHHhccCcee---EeeCCCCCchhhHHHHcCCHHHHHHHHHCCCC-CCCcCCCCC
Confidence 7778888999999999999999999999999988 99999999999999999999999999999988 999999999
Q ss_pred cHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchh
Q 043901 164 TRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPI 243 (331)
Q Consensus 164 t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 243 (331)
||||+|+..++ ..+++.+...+.++
T Consensus 138 t~L~~a~~~~~-------~~~~~~L~~~~~~i------------------------------------------------ 162 (223)
T d1uoha_ 138 TAMHRAAAKGN-------LKMIHILLYYKAST------------------------------------------------ 162 (223)
T ss_dssp CHHHHHHHTTC-------HHHHHHHHHTTCCS------------------------------------------------
T ss_pred ccchhhhhcCC-------cchhhhhcccccee------------------------------------------------
Confidence 99999999998 57777766555432
Q ss_pred hhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHHHc
Q 043901 244 VLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVEN 323 (331)
Q Consensus 244 ~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~ 323 (331)
+.+|..|+||||+|+..|+.++|++|++ .|+|++.+|.+|+||||+| ++
T Consensus 163 -----------------------------~~~d~~g~TpL~~Aa~~g~~~~v~~LL~-~Gad~~~~d~~g~tpl~~A-~~ 211 (223)
T d1uoha_ 163 -----------------------------NIQDTEGNTPLHLACDEERVEEAKLLVS-QGASIYIENKEEKTPLQVA-KG 211 (223)
T ss_dssp -----------------------------CCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHC-CT
T ss_pred -----------------------------eeccCCCCceeccccccCcHHHHHHHHH-CCCCCCCCCCCCCCHHHHH-HC
Confidence 3456689999999999999999999999 6999999999999999998 57
Q ss_pred Ccccccc
Q 043901 324 RQTSIYK 330 (331)
Q Consensus 324 ~~~~iv~ 330 (331)
|+.+|++
T Consensus 212 ~~~~i~~ 218 (223)
T d1uoha_ 212 GLGLILK 218 (223)
T ss_dssp THHHHHH
T ss_pred CCHHHHh
Confidence 8888876
|
| >d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Transcription factor inhibitor I-kappa-B-beta, IKBB species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.2e-37 Score=262.65 Aligned_cols=189 Identities=15% Similarity=0.127 Sum_probs=161.8
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCcc--cccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHH
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDRE--LISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILH 133 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~--~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh 133 (331)
++|+||||+||+.|+.+++++|++.+++ .++.+|..|.||||+|+..|+.+++++|++.|+++ +.+|.+|.||||
T Consensus 7 ~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i---~~~d~~g~tpL~ 83 (255)
T d1oy3d_ 7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV---LVAERGGHTALH 83 (255)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS---SCCCTTSCCHHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccc---cccccccchhhh
Confidence 8899999999999999999999998753 37788899999999999999999999999999999 999999999999
Q ss_pred HHHhcCCHHHHHHHHHhCCc----------------------------------------------ccccccCCCccHhH
Q 043901 134 SAISGEYFSIAFQIMRAYPD----------------------------------------------LVNSVNENGLTRLH 167 (331)
Q Consensus 134 ~A~~~~~~~~~~~Ll~~~~~----------------------------------------------~~~~~~~~g~t~l~ 167 (331)
+|+..++.+++++|++.+.. .++.+|..|.||||
T Consensus 84 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh 163 (255)
T d1oy3d_ 84 LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH 163 (255)
T ss_dssp HHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHH
T ss_pred hhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccccc
Confidence 99999999999999765421 12345566777777
Q ss_pred HHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhcc
Q 043901 168 ILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGL 247 (331)
Q Consensus 168 ~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~ 247 (331)
+|+..++ .++++.|+..+....
T Consensus 164 ~A~~~~~-------~~~v~~Ll~~~~~~~--------------------------------------------------- 185 (255)
T d1oy3d_ 164 VAVIHKD-------AEMVRLLRDAGADLN--------------------------------------------------- 185 (255)
T ss_dssp HHHHTTC-------HHHHHHHHHHTCCTT---------------------------------------------------
T ss_pred ccccccc-------cccccchhccccccc---------------------------------------------------
Confidence 7777776 566666666554322
Q ss_pred CCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHHHcCccc
Q 043901 248 GLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTS 327 (331)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~ 327 (331)
..++..|.||||+|++.|+.+++++|++ +|++++.+|..|+||||+|+.+++.+
T Consensus 186 -------------------------~~~~~~g~TpL~~A~~~~~~~~v~~Ll~-~gadin~~d~~g~t~L~~A~~~~~~~ 239 (255)
T d1oy3d_ 186 -------------------------KPEPTCGRTPLHLAVEAQAASVLELLLK-AGADPTARMYGGRTPLGSALLRPNPI 239 (255)
T ss_dssp -------------------------CCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHTSSCHH
T ss_pred -------------------------ccccccccccccccccccHHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHCCCHH
Confidence 2345679999999999999999999999 69999999999999999999999999
Q ss_pred cccC
Q 043901 328 IYKL 331 (331)
Q Consensus 328 iv~l 331 (331)
++++
T Consensus 240 i~~~ 243 (255)
T d1oy3d_ 240 LARL 243 (255)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9874
|
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Ankyrin-R species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-35 Score=266.72 Aligned_cols=311 Identities=14% Similarity=0.135 Sum_probs=189.9
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccH-----------HHH-HHhhhCCCcceec-cCCCchhhhhhccC
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQ-----------LYT-LQQQLGKPILYIR-LGGNHGRKYIKPLG 69 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~-----------~v~-Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g 69 (331)
+.+||.||..|+.+.|+.|++.+.+.. .....|.|| +++ |+++| .+ ++.. ..|.||||+|+..|
T Consensus 1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~in-~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g-ad-i~~~~~~g~t~L~~A~~~g 77 (408)
T d1n11a_ 1 LTPLHVASFMGHLPIVKNLLQRGASPN-VSNVKVETPLHMAARAGHTEVAKYLLQNK-AK-VNAKAKDDQTPLHCAARIG 77 (408)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSC-CSSSCCCCHHHHHHHHTCHHHHHHHHHHT-CC-SSCCCTTSCCHHHHHHHHT
T ss_pred CChHHHHHHCcCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHCc-CC-CCCCCCCCCCHHHHHHHcC
Confidence 468999999999999999998765422 222333555 666 66665 32 3444 56666666666666
Q ss_pred CHHHHHHHHhcCcc--------------------------------cccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCC
Q 043901 70 NEAMCHCTASKDRE--------------------------------LISVRNNDSETPLFLAALHGNMDAFLCLRSFNQA 117 (331)
Q Consensus 70 ~~~~v~~Ll~~~~~--------------------------------~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~ 117 (331)
+.+++++|+..+++ ..+..+..+.++++.|+..++.+++++|++.|++
T Consensus 78 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~ 157 (408)
T d1n11a_ 78 HTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH 157 (408)
T ss_dssp CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCC
Confidence 66666666543221 1223345566666666666666666666666666
Q ss_pred ccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCc
Q 043901 118 KDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGE 197 (331)
Q Consensus 118 ~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~ 197 (331)
+ +..+.+|.+|||+|+..|+.+++++|+..|++ ++..+..|.||+|.+..... .+....++........
T Consensus 158 ~---~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~~~t~l~~~~~~~~-------~~~~~~l~~~~~~~~~ 226 (408)
T d1n11a_ 158 P---NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQ-------VEVARSLLQYGGSANA 226 (408)
T ss_dssp T---TCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCC-SCCCCTTCCCHHHHHHHTTC-------HHHHHHHHHTTCCTTC
T ss_pred C---CcCCCcCchHHHHHHHcCCHHHHHHHHhcCCc-ccccCCCCCCcchhhhccch-------hhhhhhhhhccccccc
Confidence 6 66666666666666666666666666666665 66666666666666666655 4555555444333322
Q ss_pred -CCCCCCCcccccccccCCCCcc---------CC-CCCcchhhH---------HHHHHHHHHhchhhhccCCccc-hhhh
Q 043901 198 -ANDEESPECNRSISFSKNDDKC---------GQ-FFPPNYAAC---------FLFFWLLMKALPIVLGLGLKNF-KISI 256 (331)
Q Consensus 198 -~~~~~~~~~~~~~~~~~~~~~~---------~~-~~~~~~~~~---------~~~~~~l~~~~l~~~g~~~~~~-~~~~ 256 (331)
...+.+|++. ++..++.+. .. .....+.++ ...+.++++............. +++.
T Consensus 227 ~~~~~~t~l~~---a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~ 303 (408)
T d1n11a_ 227 ESVQGVTPLHL---AAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHV 303 (408)
T ss_dssp CCTTCCCHHHH---HHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHH
T ss_pred cCCCCCCHHHH---HHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchh
Confidence 2223333332 222221110 00 000111111 1233333332211111111111 3555
Q ss_pred hhhhchhhHHHHHhhh----hccCCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHHHcCccccccC
Q 043901 257 IPYIKKVQGLKFMEKK----DQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 257 ~~~~~~~~~~~~l~~~----~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
....+....++.+.+. +.+|..|+||||+|++.|+.++|++|++ .|+|++.+|++|+||||+|+++|+.++|++
T Consensus 304 ~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~-~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~ 381 (408)
T d1n11a_ 304 ASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK-NGASPNEVSSDGTTPLAIAKRLGYISVTDV 381 (408)
T ss_dssp HHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCSSSCCHHHHHHHTTCHHHHHH
T ss_pred hcccCcceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 5566666666666654 6788999999999999999999999999 799999999999999999999999999873
|
| >d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Lin-12 species: Caenorhabditis elegans [TaxId: 6239]
Probab=100.00 E-value=2.1e-36 Score=257.73 Aligned_cols=218 Identities=16% Similarity=0.206 Sum_probs=166.5
Q ss_pred cCCCchhhhhhccCCHHHHHHHH--------hcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCC
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTA--------SKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNN 127 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll--------~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~ 127 (331)
.+|+||||+||..|+.+++++|+ +.|++ +|.+|..|.||||+|+..|+.+++++|+++|+++ +.++.+
T Consensus 31 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gad-vn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~---n~~~~~ 106 (277)
T d2fo1e1 31 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD-VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP---TIYNKS 106 (277)
T ss_dssp SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS---CCCCTT
T ss_pred CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCC-ccccCCCCCeeecccccccccccccccccccccc---cccccc
Confidence 57999999999999999998874 56777 9999999999999999999999999999999998 999999
Q ss_pred CCcHHHHHHhcCCHHHHHHHHHhCCc--ccccccCCCccHhHHHhcCCCcccccccchhHHHHH-h-hhcccC-------
Q 043901 128 GETILHSAISGEYFSIAFQIMRAYPD--LVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRII-H-YYKTKG------- 196 (331)
Q Consensus 128 g~t~Lh~A~~~~~~~~~~~Ll~~~~~--~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li-~-~~~~~~------- 196 (331)
|.|||++|+..++.+++.++...+.. .++..+..+.++.+.+...+... ....+..+. . ......
T Consensus 107 g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (277)
T d2fo1e1 107 ERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRD----QVASAKLLVEKGAKVDYDGAARKDS 182 (277)
T ss_dssp CCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTT----HHHHHHHHHHHTCCSSCCSGGGTSS
T ss_pred ccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccc----ccccccccccccccccccccccccc
Confidence 99999999999999999998775432 35667888999999998887621 111221111 1 111111
Q ss_pred cCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhh----
Q 043901 197 EANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKK---- 272 (331)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~---- 272 (331)
....+.++++. ....+..+...++...
T Consensus 183 ~~~~g~t~L~~-------------------------------------------------~~~~~~~~~~~~~l~~~~~~ 213 (277)
T d2fo1e1 183 EKYKGRTALHY-------------------------------------------------AAQVSNMPIVKYLVGEKGSN 213 (277)
T ss_dssp SSCCCCCTHHH-------------------------------------------------HHSSCCHHHHHHHHHHSCCC
T ss_pred cccCCCCcccc-------------------------------------------------cccccccccccccccccccc
Confidence 12222333222 1112222222221111
Q ss_pred -hccCCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHHHcCccccccC
Q 043901 273 -DQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 273 -~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
+.+|..|+||||+|++.|+.++|++|++ .|+|++.+|..|+||||+|+++|+.+||++
T Consensus 214 ~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~-~gadin~~d~~G~T~L~~A~~~~~~~iv~l 272 (277)
T d2fo1e1 214 KDKQDEDGKTPIMLAAQEGRIEVVMYLIQ-QGASVEAVDATDHTARQLAQANNHHNIVDI 272 (277)
T ss_dssp TTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSSCCCSSSCCHHHHHHHTTCHHHHHH
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHH-CcCCCCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence 4578899999999999999999999999 699999999999999999999999999874
|
| >d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1e-34 Score=240.47 Aligned_cols=211 Identities=16% Similarity=0.197 Sum_probs=185.1
Q ss_pred hHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcCc
Q 043901 4 NSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKDR 82 (331)
Q Consensus 4 ~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~ 82 (331)
.+||+||+.|+.+.++.++...+. .++.+ .+|.||||+|+..|+.+++++|+++|+
T Consensus 2 ~pLh~A~~~g~~~~v~~Ll~~~~~-----------------------~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga 58 (229)
T d1ixva_ 2 YPLHQACMENEFFKVQELLHSKPS-----------------------LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 58 (229)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHCGG-----------------------GTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCT
T ss_pred HhHHHHHHcCCHHHHHHHHHcCCC-----------------------cccccCCCCCCHHHHHHHcCCccccchhhhhhc
Confidence 379999999999999999987543 34556 889999999999999999999999987
Q ss_pred cccc---ccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCccccccc
Q 043901 83 ELIS---VRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVN 159 (331)
Q Consensus 83 ~~~~---~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~ 159 (331)
+ ++ ..+..|.+|+|+++..+..++++.++..+... .....+..+.+|++.++..++.+++++|+..+.. .+.+|
T Consensus 59 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~-~~~~~ 135 (229)
T d1ixva_ 59 N-VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKP-DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKD 135 (229)
T ss_dssp T-CCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCC
T ss_pred c-ccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccchhhhhhhhhhhccc-ccccC
Confidence 6 54 56778999999999999999999999998765 3456778899999999999999999999999988 88899
Q ss_pred CCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHH
Q 043901 160 ENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMK 239 (331)
Q Consensus 160 ~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (331)
..|+||||+|+..++ .++++.|+..+....
T Consensus 136 ~~g~t~l~~a~~~~~-------~~~~~~Ll~~~~~~i------------------------------------------- 165 (229)
T d1ixva_ 136 KFNQIPLHRAASVGS-------LKLIELLCGLGKSAV------------------------------------------- 165 (229)
T ss_dssp TTSCCHHHHHHHHTC-------HHHHHHHHTTTCCCS-------------------------------------------
T ss_pred CCCCCccchhhhccc-------ccccccccccccccc-------------------------------------------
Confidence 999999999999998 688888876553211
Q ss_pred hchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHH
Q 043901 240 ALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLL 319 (331)
Q Consensus 240 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~ 319 (331)
+.+|..|+||||+|+++|+.++|++|+++.|+|++.+|..|+||||+
T Consensus 166 ---------------------------------n~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~ 212 (229)
T d1ixva_ 166 ---------------------------------NWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV 212 (229)
T ss_dssp ---------------------------------CCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGG
T ss_pred ---------------------------------cccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHH
Confidence 45577899999999999999999999986799999999999999999
Q ss_pred HHHc
Q 043901 320 AVEN 323 (331)
Q Consensus 320 A~~~ 323 (331)
|+.+
T Consensus 213 A~~~ 216 (229)
T d1ixva_ 213 ALNE 216 (229)
T ss_dssp CSCH
T ss_pred HhhH
Confidence 9864
|
| >d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: I-kappa-B-alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.2e-35 Score=240.05 Aligned_cols=186 Identities=18% Similarity=0.181 Sum_probs=159.1
Q ss_pred CCCchhhhhhccCCHH----HHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHH
Q 043901 57 GGNHGRKYIKPLGNEA----MCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETIL 132 (331)
Q Consensus 57 ~g~t~Lh~A~~~g~~~----~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~L 132 (331)
+|.||||+|+..|+.+ +++++...+++ +|.+|.+|+||||+|+..|+.+++++|++.|+++ +.+|..|.|||
T Consensus 1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~-in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~---~~~d~~g~t~l 76 (221)
T d1iknd_ 1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAF-LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP---ELRDFRGNTPL 76 (221)
T ss_dssp CCCCTTHHHHHTTCSSSSSCCCC-----CCC-CCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS---CCCCTTCCCHH
T ss_pred CCChHHHHHHHcCCHHHHHHHHHHHHhCCCC-cccCCCCCCccccccccccccccccccccccccc---ccccccccccc
Confidence 5999999999999965 55566667776 9999999999999999999999999999999998 99999999999
Q ss_pred HHHHhcCCHHHHHHHHHhCCc-----ccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCccc
Q 043901 133 HSAISGEYFSIAFQIMRAYPD-----LVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECN 207 (331)
Q Consensus 133 h~A~~~~~~~~~~~Ll~~~~~-----~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~ 207 (331)
|+++..++.++++.|+..+.. ........|.||+|.|+..++ .+.+..++..+....
T Consensus 77 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~-------~~~~~~l~~~~~~~~----------- 138 (221)
T d1iknd_ 77 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGY-------LGIVELLVSLGADVN----------- 138 (221)
T ss_dssp HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTC-------HHHHHHHHHHTCCTT-----------
T ss_pred ccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCC-------hhheeeecccCcccc-----------
Confidence 999999999999999997644 233445678999999999998 688887776664433
Q ss_pred ccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHH
Q 043901 208 RSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAA 287 (331)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~ 287 (331)
...+..|+||||+|+
T Consensus 139 -----------------------------------------------------------------~~~~~~G~T~L~~A~ 153 (221)
T d1iknd_ 139 -----------------------------------------------------------------AQEPCNGRTALHLAV 153 (221)
T ss_dssp -----------------------------------------------------------------CCCTTTCCCHHHHHH
T ss_pred -----------------------------------------------------------------cccccCCCCcccccc
Confidence 223457999999999
Q ss_pred hcChHHHHHHHHhhCCccccccccCCCcHHHHHHHcCcccccc
Q 043901 288 KMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYK 330 (331)
Q Consensus 288 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~ 330 (331)
..|+.+++++|++ +|+|++.+|.+|+||||+|++.++.++++
T Consensus 154 ~~g~~~~v~~Ll~-~gad~~~~~~~G~tpl~~A~~~~~~~~~~ 195 (221)
T d1iknd_ 154 DLQNPDLVSLLLK-CGADVNRVTYQGYSPYQLTWGRPSTRIQQ 195 (221)
T ss_dssp HTTCHHHHHHHHT-TTCCSCCCCTTCCCGGGGCTTSSCHHHHH
T ss_pred ccccHHHHHHHHh-cCCcccccCCCCCCHHHHHHHCCCHHHHH
Confidence 9999999999999 79999999999999999999999998875
|
| >d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Transcription factor inhibitor I-kappa-B-beta, IKBB species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=5e-33 Score=234.06 Aligned_cols=196 Identities=13% Similarity=0.037 Sum_probs=170.1
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcC
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKD 81 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 81 (331)
.++||.||+.|+.+.++.|++.+.. ...++.+ ..|.||||+|+..|+.+++++|++.|
T Consensus 10 ~t~Lh~A~~~~~~~~v~~Ll~~~a~---------------------~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~g 68 (255)
T d1oy3d_ 10 DTALHLAVIHQHEPFLDFLLGFSAG---------------------HEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG 68 (255)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHHTT---------------------SGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCC---------------------cccccCcCCCCCCccchHHhhccccccccccccc
Confidence 5789999999999999888876433 2335566 88999999999999999999999999
Q ss_pred cccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCc-------------------------------------------
Q 043901 82 RELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAK------------------------------------------- 118 (331)
Q Consensus 82 ~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~------------------------------------------- 118 (331)
++ ++.+|..|.||||+|+..++.+++++|++.+...
T Consensus 69 a~-i~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (255)
T d1oy3d_ 69 AG-VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDW 147 (255)
T ss_dssp CC-SSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCG
T ss_pred cc-ccccccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhc
Confidence 98 9999999999999999999999999998765432
Q ss_pred -cccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCc
Q 043901 119 -DNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGE 197 (331)
Q Consensus 119 -~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~ 197 (331)
..++.++..|.||||+|+..++.+++++|++.+.......+..|.||||+|+..++ .++++.|+..+.++
T Consensus 148 ~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~-------~~~v~~Ll~~gadi-- 218 (255)
T d1oy3d_ 148 RLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQA-------ASVLELLLKAGADP-- 218 (255)
T ss_dssp GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTC-------HHHHHHHHHTTCCT--
T ss_pred CcccccccccCcccccccccccccccccchhcccccccccccccccccccccccccH-------HHHHHHHHHCCCCC--
Confidence 14566788999999999999999999999999998555567889999999999998 79999988876543
Q ss_pred CCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCC
Q 043901 198 ANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSG 277 (331)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 277 (331)
+.+|.
T Consensus 219 ---------------------------------------------------------------------------n~~d~ 223 (255)
T d1oy3d_ 219 ---------------------------------------------------------------------------TARMY 223 (255)
T ss_dssp ---------------------------------------------------------------------------TCCCT
T ss_pred ---------------------------------------------------------------------------CCCCC
Confidence 34566
Q ss_pred CCchHHHHHHhcChHHHHHHHHhhCCcc
Q 043901 278 RNETAILIAAKMGVAEMVKKILDTFPVA 305 (331)
Q Consensus 278 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~ 305 (331)
.|+||||+|+..|+.+++++|++ +|++
T Consensus 224 ~g~t~L~~A~~~~~~~i~~~Ll~-~Ga~ 250 (255)
T d1oy3d_ 224 GGRTPLGSALLRPNPILARLLRA-HGAP 250 (255)
T ss_dssp TSCCHHHHHHTSSCHHHHHHHHH-TTCC
T ss_pred CCCCHHHHHHHCCCHHHHHHHHH-cCCC
Confidence 89999999999999999999999 6986
|
| >d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Myosin phosphatase targeting subunit 1, MYPT1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=100.00 E-value=9.5e-33 Score=236.87 Aligned_cols=211 Identities=18% Similarity=0.107 Sum_probs=124.6
Q ss_pred CCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHH
Q 043901 57 GGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAI 136 (331)
Q Consensus 57 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~ 136 (331)
.|.|||+.||..|+.++|++||++|++ +|.+|..|.||||+|+..|+.+++++|+++|++. ...+..+.+||+.++
T Consensus 39 ~~~t~l~~A~~~G~~~~v~~Ll~~Gad-vn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~---~~~~~~~~~~L~~a~ 114 (291)
T d1s70b_ 39 DDGAVFLAACSSGDTEEVLRLLERGAD-INYANVDGLTALHQACIDDNVDMVKFLVENGANI---NQPDNEGWIPLHAAA 114 (291)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHCCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHH
T ss_pred CCchHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCcHHHHHHhcCCceeeeeeccccccc---ccccccccccccccc
Confidence 344666666666666666666666665 6666666666666666666666666666666655 555556666666666
Q ss_pred hcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccc-------cc-------------hhHHHHHhhhc-cc
Q 043901 137 SGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGS-------RL-------------GLFDRIIHYYK-TK 195 (331)
Q Consensus 137 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~-------~~-------------~~~~~li~~~~-~~ 195 (331)
..++.++++.|++.|.. .+..|..|.+|+++|+..+....-.. .. .....+..... ..
T Consensus 115 ~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (291)
T d1s70b_ 115 SCGYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDV 193 (291)
T ss_dssp HHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred cccccchhhcccccCcc-cccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccc
Confidence 66666666666666655 55566666666666554443200000 00 00000000000 00
Q ss_pred CcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhh---
Q 043901 196 GEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKK--- 272 (331)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~--- 272 (331)
.....+.+|+ +.++..+..+.++.|.+.
T Consensus 194 ~~~~~g~t~L-------------------------------------------------~~a~~~~~~~~~~~Ll~~g~d 224 (291)
T d1s70b_ 194 RHAKSGGTAL-------------------------------------------------HVAAAKGYTEVLKLLIQARYD 224 (291)
T ss_dssp CCTTTCCCHH-------------------------------------------------HHHHHHTCHHHHHHHHTTTCC
T ss_pred cccCCCCChh-------------------------------------------------hHHHHcCChhhhcccccceec
Confidence 0111111111 112222333333333322
Q ss_pred -hccCCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHHH
Q 043901 273 -DQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVE 322 (331)
Q Consensus 273 -~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~ 322 (331)
+.++..|+||||+|+..|+.++|++|++ +|+|++.+|..|+||||+|++
T Consensus 225 in~~~~~g~TpL~~A~~~g~~~iv~lLl~-~Gadv~~~d~~G~TaL~~A~e 274 (291)
T d1s70b_ 225 VNIKDYDGWTPLHAAAHWGKEEACRILVE-NLCDMEAVNKVGQTAFDVADE 274 (291)
T ss_dssp TTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCTTTSCCS
T ss_pred ccccccCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHH
Confidence 4567789999999999999999999999 799999999999999999976
|
| >d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: bcl-3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=9.2e-32 Score=220.61 Aligned_cols=214 Identities=16% Similarity=0.160 Sum_probs=167.5
Q ss_pred cCCCchhhhhhccCCHHHHHHHHh----cCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcH
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTAS----KDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETI 131 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~----~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~ 131 (331)
.+|+||||+||..|+.+++++|++ .|.+ +|.+|..|.||||+|+..|+.+++++|+++|+++ +.....|.++
T Consensus 1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~-in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~---~~~~~~~~~~ 76 (228)
T d1k1aa_ 1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE-LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP---MALDRHGQTA 76 (228)
T ss_dssp CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCH
T ss_pred CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCccCCCCCccceehhcccccccccccccccccc---cccccccccc
Confidence 479999999999999999999885 6666 9999999999999999999999999999999998 8999999999
Q ss_pred HHHHHhcCCHHHHHHHHHhCCc---ccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCc--CCCCCCCcc
Q 043901 132 LHSAISGEYFSIAFQIMRAYPD---LVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGE--ANDEESPEC 206 (331)
Q Consensus 132 Lh~A~~~~~~~~~~~Ll~~~~~---~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~~~~~~~ 206 (331)
++.|...++.++++.+...... ..+.....+.++++.+..... ......+......... ...+.++++
T Consensus 77 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~l~ 149 (228)
T d1k1aa_ 77 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC-------QETVQLLLERGADIDAVDIKSGRSPLI 149 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTC-------HHHHHHHHHTTCCTTCCCTTTCCCHHH
T ss_pred cccccccccccchhhhhhcccccccccccccccccccccccccccc-------chhhhhhhccccccccccccchhhHHH
Confidence 9999999999999988886543 234455678899999888776 4555555444433221 111112111
Q ss_pred cccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhh----hccCCCCchH
Q 043901 207 NRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKK----DQQSGRNETA 282 (331)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~g~tp 282 (331)
. ++........+.+.+. +.++..|.||
T Consensus 150 ~-------------------------------------------------a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~ 180 (228)
T d1k1aa_ 150 H-------------------------------------------------AVENNSLSMVQLLLQHGANVNAQMYSGSSA 180 (228)
T ss_dssp H-------------------------------------------------HHHTTCHHHHHHHHHTTCCTTCBCTTSCBH
T ss_pred H-------------------------------------------------HHHhhhhhhhhhhhhhccccccccccCcch
Confidence 1 1111111222222221 5678899999
Q ss_pred HHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHHHcCcccccc
Q 043901 283 ILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYK 330 (331)
Q Consensus 283 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~ 330 (331)
||+|+..|+.+++++|++ .|+|++.+|.+|+||||+|+++|+.+|||
T Consensus 181 L~~A~~~g~~~~v~~Ll~-~Gad~n~~d~~G~TpL~~A~~~~~~divk 227 (228)
T d1k1aa_ 181 LHSASGRGLLPLVRTLVR-SGADSSLKNCHNDTPLMVARSRRVIDILR 227 (228)
T ss_dssp HHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence 999999999999999999 69999999999999999999999999986
|
| >d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Neurogenic locus notch receptor domain species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.97 E-value=4.3e-31 Score=215.39 Aligned_cols=201 Identities=20% Similarity=0.207 Sum_probs=176.2
Q ss_pred HHH-HHhhhCCCccee-c-cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCC
Q 043901 40 LYT-LQQQLGKPILYI-R-LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQ 116 (331)
Q Consensus 40 ~v~-Ll~~~~~~~~~~-~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~ 116 (331)
+|+ |+++| .+ ++. . .+|.||||+||..|+.+++++|++.|+. ++.++..+.++++.++..++............
T Consensus 4 ~v~~Ll~~g-~d-in~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~-~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (209)
T d1ot8a_ 4 VISDLLAQG-AE-LNATMDKTGETSLHLAARFARADAAKRLLDAGAD-ANSQDNTGRTPLHAAVAADAMGVFQILLRNRA 80 (209)
T ss_dssp HHHHHHHHH-HH-HHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTT
T ss_pred HHHHHHHCC-CC-cCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccc-cccccccccccccccccccccccccccccccc
Confidence 789 99999 55 444 4 7899999999999999999999999998 99999999999999999999887777776654
Q ss_pred CccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccC
Q 043901 117 AKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKG 196 (331)
Q Consensus 117 ~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~ 196 (331)
.. .......|.++.+.+.........+.|...+.+ ++.++..|.||++.++..+. ..++..++..+.+.
T Consensus 81 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~-~~~~~~~~~t~l~~~~~~~~-------~~~~~~l~~~~~~~- 149 (209)
T d1ot8a_ 81 TN--LNARMHDGTTPLILAARLAIEGMVEDLITADAD-INAADNSGKTALHWAAAVNN-------TEAVNILLMHHANR- 149 (209)
T ss_dssp CC--TTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTC-------HHHHHHHHHTTCCT-
T ss_pred cc--cccccccccccccccccccchhhhhhhhhhccc-ccccCCCCCCcchhhcccCc-------ceeeeeeccccccc-
Confidence 33 244566788999999999999999999999988 99999999999999999988 67777777666442
Q ss_pred cCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccC
Q 043901 197 EANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQS 276 (331)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 276 (331)
+..|
T Consensus 150 ----------------------------------------------------------------------------~~~d 153 (209)
T d1ot8a_ 150 ----------------------------------------------------------------------------DAQD 153 (209)
T ss_dssp ----------------------------------------------------------------------------TCCC
T ss_pred ----------------------------------------------------------------------------cccc
Confidence 3346
Q ss_pred CCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHHHcCccccccC
Q 043901 277 GRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 277 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
..|.||||+|+..|+.++|++|++ .|+|++.+|..|+||||+|+++|+.+||++
T Consensus 154 ~~g~TpL~~A~~~g~~~~v~~Ll~-~gad~n~~d~~g~Tpl~~A~~~~~~~iv~l 207 (209)
T d1ot8a_ 154 DKDETPLFLAAREGSYEASKALLD-NFANREITDHMDRLPRDVASERLHHDIVRL 207 (209)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred cccccccchhccccHHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCCHHHHhh
Confidence 689999999999999999999999 799999999999999999999999999974
|
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Ankyrin-R species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.7e-30 Score=232.83 Aligned_cols=281 Identities=16% Similarity=0.128 Sum_probs=210.8
Q ss_pred CccHHHH-HHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHh
Q 043901 36 LETQLYT-LQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRS 113 (331)
Q Consensus 36 ~~t~~v~-Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~ 113 (331)
|+..+|+ |++.| .+ ++.. ..|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+.
T Consensus 11 g~~~~v~~Ll~~g-~~-in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad-i~~~~~~g~t~L~~A~~~g~~~~~~~Ll~ 87 (408)
T d1n11a_ 11 GHLPIVKNLLQRG-AS-PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAARIGHTNMVKLLLE 87 (408)
T ss_dssp TCHHHHHHHHHTT-CC-SCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCC-SSCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred cCHHHHHHHHHCC-CC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 3455899 99998 44 5556 8899999999999999999999999997 99999999999999999999999999998
Q ss_pred cCCCc------------------------------cccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCc
Q 043901 114 FNQAK------------------------------DNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGL 163 (331)
Q Consensus 114 ~g~~~------------------------------~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~ 163 (331)
.+++. ......+..+.++++.|+..++.+++++|++.+.. ++..+.+|.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~-~~~~~~~~~ 166 (408)
T d1n11a_ 88 NNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH-PNAAGKNGL 166 (408)
T ss_dssp HTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCSSCC
T ss_pred hhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCcCc
Confidence 76654 12344567889999999999999999999999998 999999999
Q ss_pred cHhHHHhcCCCcccccccchhHHHHHhhhcccCc-CCCCCCCcccccccccCCCCc----------cCCCCCcchhhH--
Q 043901 164 TRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGE-ANDEESPECNRSISFSKNDDK----------CGQFFPPNYAAC-- 230 (331)
Q Consensus 164 t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~-- 230 (331)
+|||+|+..++ .++++.++..+.+... ...+.+|.+. +....... ..........+.
T Consensus 167 ~~L~~A~~~~~-------~~~~~~Ll~~g~~~~~~~~~~~t~l~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~ 236 (408)
T d1n11a_ 167 TPLHVAVHHNN-------LDIVKLLLPRGGSPHSPAWNGYTPLHI---AAKQNQVEVARSLLQYGGSANAESVQGVTPLH 236 (408)
T ss_dssp CHHHHHHHTTC-------HHHHHHHGGGTCCSCCCCTTCCCHHHH---HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred hHHHHHHHcCC-------HHHHHHHHhcCCcccccCCCCCCcchh---hhccchhhhhhhhhhccccccccCCCCCCHHH
Confidence 99999999998 7999999998877653 3444555554 11111100 000000111111
Q ss_pred -------HHHHHHHHHhchhhhccCCcc-chhhhhhhhchhhHHHHHhhh----hccCCCCchHHHHHHhcChHHHHHHH
Q 043901 231 -------FLFFWLLMKALPIVLGLGLKN-FKISIIPYIKKVQGLKFMEKK----DQQSGRNETAILIAAKMGVAEMVKKI 298 (331)
Q Consensus 231 -------~~~~~~l~~~~l~~~g~~~~~-~~~~~~~~~~~~~~~~~l~~~----~~~~~~g~tpLh~A~~~g~~~~v~~L 298 (331)
...+..+........-..... .++..+...+..+.+++|.+. +..+..+.||||.|+..++.++++++
T Consensus 237 ~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~l 316 (408)
T d1n11a_ 237 LAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFL 316 (408)
T ss_dssp HHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHH
T ss_pred HHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeee
Confidence 122222222111111111111 135566667777778887765 55677899999999999999999999
Q ss_pred HhhCCccccccccCCCcHHHHHHHcCccccccC
Q 043901 299 LDTFPVAMQDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 299 l~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
++ .|++++.+|.+|+||||+|+++|+.++|++
T Consensus 317 l~-~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~ 348 (408)
T d1n11a_ 317 LQ-HQADVNAKTKLGYSPLHQAAQQGHTDIVTL 348 (408)
T ss_dssp HH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred cc-ccccccccCCCCCCHHHHHHHcCCHHHHHH
Confidence 99 699999999999999999999999999873
|
| >d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=5.7e-31 Score=217.73 Aligned_cols=188 Identities=14% Similarity=0.067 Sum_probs=166.6
Q ss_pred CchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhc
Q 043901 59 NHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISG 138 (331)
Q Consensus 59 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~ 138 (331)
.||||+||..|+.++++.|++.++..++.+|.+|.||||+|+..|+.+++++|+++|+++...+..+..|.+|+|+++..
T Consensus 1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~ 80 (229)
T d1ixva_ 1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV 80 (229)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence 48999999999999999999987777999999999999999999999999999999998844456788999999999999
Q ss_pred CCHHHHHHHHHhCCc-ccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCC
Q 043901 139 EYFSIAFQIMRAYPD-LVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDD 217 (331)
Q Consensus 139 ~~~~~~~~Ll~~~~~-~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (331)
+..++++.++..+.. .....+..+.||++.++..++ .++++.++..+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~l~~~~~~~---------------------- 131 (229)
T d1ixva_ 81 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKW-------FEVSQFLIENGASV---------------------- 131 (229)
T ss_dssp TCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTC-------HHHHHHHHHTTCCS----------------------
T ss_pred cccccccccccccccccccccccccccccccccccch-------hhhhhhhhhhcccc----------------------
Confidence 999999999988765 355567889999999999988 68888877665432
Q ss_pred ccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHH
Q 043901 218 KCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKK 297 (331)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~ 297 (331)
+.++..|+||||+|+..|+.+++++
T Consensus 132 -------------------------------------------------------~~~~~~g~t~l~~a~~~~~~~~~~~ 156 (229)
T d1ixva_ 132 -------------------------------------------------------RIKDKFNQIPLHRAASVGSLKLIEL 156 (229)
T ss_dssp -------------------------------------------------------CCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred -------------------------------------------------------cccCCCCCCccchhhhccccccccc
Confidence 2345679999999999999999999
Q ss_pred HHhhCCccccccccCCCcHHHHHHHcCcccccc
Q 043901 298 ILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYK 330 (331)
Q Consensus 298 Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~ 330 (331)
|++..+.+++.+|.+|+||||+|+.+|+.++|+
T Consensus 157 Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~ 189 (229)
T d1ixva_ 157 LCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAV 189 (229)
T ss_dssp HHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred ccccccccccccccccCCchhhhcccccHHHHH
Confidence 999666899999999999999999999999986
|
| >d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=6.5e-31 Score=216.79 Aligned_cols=185 Identities=23% Similarity=0.204 Sum_probs=169.7
Q ss_pred CCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHh
Q 043901 58 GNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAIS 137 (331)
Q Consensus 58 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~ 137 (331)
+.+.|+.+|..|+.+.++.+++.++..++.+|..|+||||+|+..|+.+++++|++.+.+. ...+..+.++++.++.
T Consensus 3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~---~~~~~~~~~~~~~~~~ 79 (223)
T d1uoha_ 3 SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV---NDKDDAGWSPLHIAAS 79 (223)
T ss_dssp SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCS---CCCCTTCCCHHHHHHH
T ss_pred CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhccccccccccccc---cccccccccccccccc
Confidence 4578999999999999988888877779999999999999999999999999999999988 7788899999999999
Q ss_pred cCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCC
Q 043901 138 GEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDD 217 (331)
Q Consensus 138 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (331)
.++.+++++|++++.+ ++.+|..|.||||+|+..++ .++++.|+..+.+.
T Consensus 80 ~~~~~i~~~Ll~~~~d-~~~~d~~g~tpL~~A~~~~~-------~e~~~~Ll~~g~d~---------------------- 129 (223)
T d1uoha_ 80 AGRDEIVKALLGKGAQ-VNAVNQNGCTPLHYAASKNR-------HEIAVMLLEGGANP---------------------- 129 (223)
T ss_dssp HTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTC-------HHHHHHHHHTTCCT----------------------
T ss_pred ccccchhHHHhccCce-eEeeCCCCCchhhHHHHcCC-------HHHHHHHHHCCCCC----------------------
Confidence 9999999999999987 99999999999999999998 79999998776542
Q ss_pred ccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHH
Q 043901 218 KCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKK 297 (331)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~ 297 (331)
+.++..|.||||+|+..|+.+++++
T Consensus 130 -------------------------------------------------------~~~~~~~~t~L~~a~~~~~~~~~~~ 154 (223)
T d1uoha_ 130 -------------------------------------------------------DAKDHYEATAMHRAAAKGNLKMIHI 154 (223)
T ss_dssp -------------------------------------------------------TCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred -------------------------------------------------------CCcCCCCCccchhhhhcCCcchhhh
Confidence 2345679999999999999999999
Q ss_pred HHhhCCccccccccCCCcHHHHHHHcCccccccC
Q 043901 298 ILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 298 Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
|++ .+.+++.+|..|+||||+|+.+|+.++|++
T Consensus 155 L~~-~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~ 187 (223)
T d1uoha_ 155 LLY-YKASTNIQDTEGNTPLHLACDEERVEEAKL 187 (223)
T ss_dssp HHH-TTCCSCCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred hcc-ccceeeeccCCCCceeccccccCcHHHHHH
Confidence 998 799999999999999999999999999873
|
| >d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: RNase L, 2-5a-dependent ribonuclease species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=6.5e-30 Score=218.10 Aligned_cols=249 Identities=18% Similarity=0.163 Sum_probs=194.6
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcC
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKD 81 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 81 (331)
-+.|++||+.|+.+.++.|++.+.+ +.... ..|.||||+|+..|+.+++++|++.+
T Consensus 6 ~~~L~~Ai~~~~~e~vk~Ll~~G~d-----------------------in~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~ 62 (285)
T d1wdya_ 6 NHLLIKAVQNEDVDLVQQLLEGGAN-----------------------VNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCC-----------------------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred cHHHHHHHHcCCHHHHHHHHHCCCC-----------------------cCccCCCCCCCHHHHHHHcCCHHHhhhhcccc
Confidence 4679999999999999999987533 22233 67999999999999999999999999
Q ss_pred cccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCccccc----
Q 043901 82 RELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNS---- 157 (331)
Q Consensus 82 ~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~---- 157 (331)
.. .+..+..+.+|.++|+..+..+...++++...+. ...+..+.++++.|+..+....+..++..... ++.
T Consensus 63 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~-~~~~~~~ 137 (285)
T d1wdya_ 63 AD-PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV---NECDFYGFTAFMEAAVYGKVKALKFLYKRGAN-VNLRRKT 137 (285)
T ss_dssp CC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT---TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCCC
T ss_pred cc-ccccccccchhhHHHhhcCCccccchhhhhcccc---cccccCCCchhHHHHHhcchhhhhhhhhhccc-ccccccc
Confidence 87 8888889999999999999999999999988776 67888999999999999999999999987655 332
Q ss_pred ------ccCCCccHhHHHhcCCCcccccccchhHHHHHhh-hcccCc-CCCCCCCcccccccccCCCCccCCCCCcchhh
Q 043901 158 ------VNENGLTRLHILASKPTAFKRGSRLGLFDRIIHY-YKTKGE-ANDEESPECNRSISFSKNDDKCGQFFPPNYAA 229 (331)
Q Consensus 158 ------~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (331)
.+..|.||||+|+..++ .++++.|+.. +.++.. +..+..+.......
T Consensus 138 ~~~~~~~~~~g~t~L~~A~~~~~-------~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~------------------ 192 (285)
T d1wdya_ 138 KEDQERLRKGGATALMDAAEKGH-------VEVLKILLDEMGADVNACDNMGRNALIHALLS------------------ 192 (285)
T ss_dssp CHHHHHTTCCCCCHHHHHHHHTC-------HHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHC------------------
T ss_pred hhhhhhhcccCchHHHHHHHcCC-------HHHHHHHHhccCCCcccccCCCCccccccccc------------------
Confidence 34569999999999998 7999999865 333321 11111111100000
Q ss_pred HHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhh----hccCCCCchHHHHHHhcChHHHHHHHHhhCCcc
Q 043901 230 CFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKK----DQQSGRNETAILIAAKMGVAEMVKKILDTFPVA 305 (331)
Q Consensus 230 ~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~ 305 (331)
+........+++|.+. +.++..|.||||.|++.|+.+++++|++..|++
T Consensus 193 ---------------------------~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~d 245 (285)
T d1wdya_ 193 ---------------------------SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE 245 (285)
T ss_dssp ---------------------------SCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCC
T ss_pred ---------------------------ccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCC
Confidence 0001111112223222 556788999999999999999999999977999
Q ss_pred ccccccCCCcHHHHHHHcCccccccC
Q 043901 306 MQDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 306 ~~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
++.+|.+|+||||+|+++|+.++|++
T Consensus 246 in~~d~~G~TpL~~A~~~~~~eiv~~ 271 (285)
T d1wdya_ 246 INDTDSDGKTALLLAVELKLKKIAEL 271 (285)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred CcCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999873
|
| >d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Myosin phosphatase targeting subunit 1, MYPT1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.97 E-value=7.3e-31 Score=224.98 Aligned_cols=208 Identities=15% Similarity=0.127 Sum_probs=150.8
Q ss_pred CCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHH
Q 043901 90 NDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHIL 169 (331)
Q Consensus 90 ~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A 169 (331)
..+.|||+.|+..|+.+++++|++.|+++ +.+|.+|.||||+|+..|+.+++++|++++.+ ....+..+.|||+.+
T Consensus 38 ~~~~t~l~~A~~~G~~~~v~~Ll~~Gadv---n~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~-~~~~~~~~~~~L~~a 113 (291)
T d1s70b_ 38 FDDGAVFLAACSSGDTEEVLRLLERGADI---NYANVDGLTALHQACIDDNVDMVKFLVENGAN-INQPDNEGWIPLHAA 113 (291)
T ss_dssp ECHHHHHHHHHHHTCHHHHHHHHHHCCCT---TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHH
T ss_pred CCCchHHHHHHHcCCHHHHHHHHHCCCCC---CccCCCCCcHHHHHHhcCCceeeeeecccccc-ccccccccccccccc
Confidence 35779999999999999999999999999 99999999999999999999999999999988 888899999999999
Q ss_pred hcCCCcccccccchhHHHHHhhhcccCc-CCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccC
Q 043901 170 ASKPTAFKRGSRLGLFDRIIHYYKTKGE-ANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLG 248 (331)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~ 248 (331)
+..++ .++++.++..+..... +....++.+. +. .......+..++ ...+..
T Consensus 114 ~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~---a~--------------~~~~~~~~~~ll----~~~~~~ 165 (291)
T d1s70b_ 114 ASCGY-------LDIAEYLISQGAHVGAVNSEGDTPLDI---AE--------------EEAMEELLQNEV----NRQGVD 165 (291)
T ss_dssp HHHTC-------HHHHHHHHHTTCCTTCCCTTSCCHHHH---CC--------------SHHHHHHHHHHH----HHHTCC
T ss_pred ccccc-------cchhhcccccCcccccccccCcccccc---cc--------------ccccchhccccc----cccccc
Confidence 99998 7999999988765442 2222233221 10 111111222221 111111
Q ss_pred CccchhhhhhhhchhhHHHHHhhh----hccCCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHHHcC
Q 043901 249 LKNFKISIIPYIKKVQGLKFMEKK----DQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENR 324 (331)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~ 324 (331)
.. .................+... ...+..|.||||.|+..|+.+++++|++ .|++++.+|..|+||||+|++.|
T Consensus 166 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~-~g~din~~~~~g~TpL~~A~~~g 243 (291)
T d1s70b_ 166 IE-AARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ-ARYDVNIKDYDGWTPLHAAAHWG 243 (291)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHTT
T ss_pred cc-cccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhccccc-ceecccccccCCCCHHHHHHHcC
Confidence 00 000000000000001111111 3456789999999999999999999999 79999999999999999999999
Q ss_pred ccccccC
Q 043901 325 QTSIYKL 331 (331)
Q Consensus 325 ~~~iv~l 331 (331)
+.++|++
T Consensus 244 ~~~iv~l 250 (291)
T d1s70b_ 244 KEEACRI 250 (291)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 9999874
|
| >d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: p18ink4C(ink6) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=2.8e-29 Score=195.05 Aligned_cols=153 Identities=16% Similarity=0.185 Sum_probs=141.1
Q ss_pred chhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcC
Q 043901 60 HGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGE 139 (331)
Q Consensus 60 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~ 139 (331)
+|||+||..|+.++|++|+++|++ ++.+|..|.||||+|+ .|+.+++++|++.|+++ +..+..|.+|++.++..+
T Consensus 3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d-~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~---~~~~~~~~~~l~~~~~~~ 77 (156)
T d1ihba_ 3 NELASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMK-LGNPEIARRLLLRGANP---DLKDRTGFAVIHDAARAG 77 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHTTSCCC-TTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCC-cCccCCcccccccccc-ccccccccccccccccc---ccccccCccccccccccc
Confidence 899999999999999999999998 9999999999999886 78999999999999998 999999999999999999
Q ss_pred CHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCcc
Q 043901 140 YFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKC 219 (331)
Q Consensus 140 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (331)
..++++.|++.+.. ++..+..|.+|+|+|+..++ .++++.++..+....
T Consensus 78 ~~~~~~~l~~~~~~-~~~~~~~~~~~l~~a~~~~~-------~~~~~~Ll~~~~~~~----------------------- 126 (156)
T d1ihba_ 78 FLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGH-------LRVVEFLVKHTASNV----------------------- 126 (156)
T ss_dssp CHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTC-------HHHHHHHHHHSCCCT-----------------------
T ss_pred cccccccccccccc-cccccccccccccccccccc-------ccccccccccccccc-----------------------
Confidence 99999999999988 99999999999999999998 788888887764321
Q ss_pred CCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHH
Q 043901 220 GQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKIL 299 (331)
Q Consensus 220 ~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll 299 (331)
+.+|..|+||||+|++.|+.+++++|+
T Consensus 127 -----------------------------------------------------~~~d~~g~TpL~~A~~~~~~~iv~~Ll 153 (156)
T d1ihba_ 127 -----------------------------------------------------GHRNHKGDTACDLARLYGRNEVVSLMQ 153 (156)
T ss_dssp -----------------------------------------------------TCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred -----------------------------------------------------cccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 345678999999999999999999999
Q ss_pred hh
Q 043901 300 DT 301 (331)
Q Consensus 300 ~~ 301 (331)
++
T Consensus 154 ~~ 155 (156)
T d1ihba_ 154 AN 155 (156)
T ss_dssp HT
T ss_pred hc
Confidence 83
|
| >d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Lin-12 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.96 E-value=1e-29 Score=215.96 Aligned_cols=225 Identities=16% Similarity=0.117 Sum_probs=160.2
Q ss_pred Cchhhhhh-ccCCHHHHHHHHhcCcccccccC-CCCCcHHHHHHhcCCHHHHHHH--------HhcCCCccccccccCCC
Q 043901 59 NHGRKYIK-PLGNEAMCHCTASKDRELISVRN-NDSETPLFLAALHGNMDAFLCL--------RSFNQAKDNRQCRKNNG 128 (331)
Q Consensus 59 ~t~Lh~A~-~~g~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A~~~~~~~~~~~L--------l~~g~~~~~~~~~~~~g 128 (331)
.||||+|+ ..|+.++++.|.+.+.+ ..| ..|+||||+|+..|+.+++++| ++.|+++ |.+|.+|
T Consensus 1 ~~p~~~~~~~~~~~~~~~~l~~~~~n---~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadv---n~~d~~G 74 (277)
T d2fo1e1 1 ESPIKLHTEAAGSYAITEPITRESVN---IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV---NAMDCDE 74 (277)
T ss_dssp CCCCHHHHHHHSSSCCCSCCSTTTTT---TCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT---TCCCTTS
T ss_pred CChHHHHHHhCCCHHHHHHHHhcCCC---cCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCc---cccCCCC
Confidence 48999777 45777788777776644 344 4599999999999999988766 5678988 9999999
Q ss_pred CcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCc----CCCCCCC
Q 043901 129 ETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGE----ANDEESP 204 (331)
Q Consensus 129 ~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~----~~~~~~~ 204 (331)
.||||+|+..|+.+++++|+++|++ ++.+|..|+||+++|+..++ ..++..+......... .....++
T Consensus 75 ~TpLh~A~~~g~~~iv~~Ll~~Gad-~n~~~~~g~t~l~~a~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~ 146 (277)
T d2fo1e1 75 NTPLMLAVLARRRRLVAYLMKAGAD-PTIYNKSERSALHQAAANRD-------FGMMVYMLNSTKLKGDIEELDRNGMTA 146 (277)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHTTC-------HHHHHHHTTSHHHHHTTSCCCTTSCCH
T ss_pred Ceeeccccccccccccccccccccc-cccccccccccccchhhhcc-------hhhhhhhhhcccccccccccccccchh
Confidence 9999999999999999999999998 99999999999999999998 5666666543322111 0111111
Q ss_pred cccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHH
Q 043901 205 ECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAIL 284 (331)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh 284 (331)
... +.... ..........+........ .......+..+..|+||||
T Consensus 147 ~~~---~~~~~-----------~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~g~t~L~ 192 (277)
T d2fo1e1 147 LMI---VAHNE-----------GRDQVASAKLLVEKGAKVD--------------------YDGAARKDSEKYKGRTALH 192 (277)
T ss_dssp HHH---HHHSC-----------STTHHHHHHHHHHHTCCSS--------------------CCSGGGTSSSSCCCCCTHH
T ss_pred HHH---HHhcc-----------ccccccccccccccccccc--------------------ccccccccccccCCCCccc
Confidence 000 00000 0001111111111000000 0000001456778999999
Q ss_pred HHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHHHcCccccccC
Q 043901 285 IAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 285 ~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
+|+..++.+++++++...+.+++.+|..|+||||+|++.|+.++|++
T Consensus 193 ~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~ 239 (277)
T d2fo1e1 193 YAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMY 239 (277)
T ss_dssp HHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred cccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHH
Confidence 99999999999998877899999999999999999999999999873
|
| >d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Pseudo ankyrin repeat-like family: Pseudo ankyrin repeat domain: Hypothetical protein LPG2416 species: Legionella pneumophila [TaxId: 446]
Probab=99.96 E-value=5.4e-31 Score=231.26 Aligned_cols=235 Identities=10% Similarity=-0.011 Sum_probs=160.3
Q ss_pred eec-cCCCchhhhhhccCCHHHHHH---HHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCcccccccc--C
Q 043901 53 YIR-LGGNHGRKYIKPLGNEAMCHC---TASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRK--N 126 (331)
Q Consensus 53 ~~~-~~g~t~Lh~A~~~g~~~~v~~---Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~--~ 126 (331)
..+ ..|.||||+||..|+.+++++ |++.|++ +|.+|..|.||||+|+.+|+.+++++|++.|+++ +..+ .
T Consensus 84 ~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~-in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~---~~~~~~~ 159 (346)
T d2ajaa1 84 HKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEI-VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTE---IMAMIQA 159 (346)
T ss_dssp HHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSS-CC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTT---HHHHHSH
T ss_pred HhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCc-ccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc---ccccccc
Confidence 344 689999999999999887766 7888887 9999999999999999999999999999999988 6655 4
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHHhCCc--ccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCc-CCCCCC
Q 043901 127 NGETILHSAISGEYFSIAFQIMRAYPD--LVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGE-ANDEES 203 (331)
Q Consensus 127 ~g~t~Lh~A~~~~~~~~~~~Ll~~~~~--~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~~~~ 203 (331)
+|.||||+|+..|+.+++++|++.|+. +.+..+.+|.||++.|+.+|+ .++++.|+..+.+... .....+
T Consensus 160 ~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~-------~~iv~~Ll~~ga~~~~~~~~~~~ 232 (346)
T d2ajaa1 160 ENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGH-------HNVINFLLDCPVMLAYAEIHEFE 232 (346)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCC-------HHHHHHHTTSHHHHHHHHHCTTT
T ss_pred CCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCH-------HHHHHHHHhCCCCcchHHHHHHH
Confidence 689999999999999999999999875 234455678889999999999 7999999988765542 111111
Q ss_pred CcccccccccCCCCccCCCCCcchhhHHHHHHHH--HHhchhhhc-cCCccchhhhhhhhchhhHHHHHhhhhccCCCCc
Q 043901 204 PECNRSISFSKNDDKCGQFFPPNYAACFLFFWLL--MKALPIVLG-LGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNE 280 (331)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~l~~~g-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 280 (331)
+.+. . ............ ....+...+ .+.. ...+... ......+.
T Consensus 233 ~~~~----------~-------~~~~~~~~~~~~~~~~~~l~~a~~~~~~----------~~~~~~~-----~~~~~~~~ 280 (346)
T d2ajaa1 233 YGEK----------Y-------VNPFIARHVNRLKEMHDAFKLSNPDGVF----------DLVTKSE-----CLQGFYML 280 (346)
T ss_dssp TTTT----------T-------HHHHHHHHHHHHHHHHTTTTTTSSSSCC----------CCSSHHH-----HHHHHHHH
T ss_pred cCcH----------h-------hhHHHHHhhccchHHHHHHHHhcccccH----------hHHhccc-----ccccchhh
Confidence 1110 0 000000000000 000110000 0000 0000000 00111357
Q ss_pred hHHHHHHhcChHHHHHHHHhhCCcc-----ccccccCCCcHHHHHHHcCccccccC
Q 043901 281 TAILIAAKMGVAEMVKKILDTFPVA-----MQDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 281 tpLh~A~~~g~~~~v~~Ll~~~~~~-----~~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
+|++.|+..|..+++++|++ .+.. .+..+.+|+||||+|++.||.++|++
T Consensus 281 ~~l~~a~~~~~ld~v~~Ll~-~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~l 335 (346)
T d2ajaa1 281 RNLIRRNDEVLLDDIRFLLS-IPGIKALAPTATIPGDANELLRLALRLGNQGACAL 335 (346)
T ss_dssp HHHHHHCCGGGHHHHHHHHT-STTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHH
T ss_pred hHHHHHhcCChHHHHHHHHh-CcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHH
Confidence 89999999999999999998 4543 33445679999999999999999974
|
| >d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: I-kappa-B-alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=7.1e-29 Score=204.12 Aligned_cols=194 Identities=13% Similarity=0.092 Sum_probs=160.9
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcC
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKD 81 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 81 (331)
.++||.||..|+.+.+.++++.. ...+ ..++.+ .+|+||||+|+..|+.+++++|++.|
T Consensus 3 ~t~Lh~A~~~g~~~~~~~li~~~------------------~~~~--~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g 62 (221)
T d1iknd_ 3 DSFLHLAIIHEEKALTMEVIRQV------------------KGDL--AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 62 (221)
T ss_dssp CCTTHHHHHTTCSSSSSCCCC-----------------------C--CCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCC
T ss_pred ChHHHHHHHcCCHHHHHHHHHHH------------------HhCC--CCcccCCCCCCcccccccccccccccccccccc
Confidence 46899999999876655544332 2222 335666 89999999999999999999999999
Q ss_pred cccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCc---cccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccc
Q 043901 82 RELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAK---DNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSV 158 (331)
Q Consensus 82 ~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~---~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~ 158 (331)
++ ++.+|..|.||||+|+..++.++++.|++.+... .........|.||||.|+..++.+++++|+..+.......
T Consensus 63 ~d-~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~ 141 (221)
T d1iknd_ 63 CD-PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE 141 (221)
T ss_dssp CC-SCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCC
T ss_pred cc-ccccccccccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCccccccc
Confidence 98 9999999999999999999999999999987654 2223345678999999999999999999999999833444
Q ss_pred cCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHH
Q 043901 159 NENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLM 238 (331)
Q Consensus 159 ~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 238 (331)
+.+|.||||+|+..|+ .++++.|+..+.++
T Consensus 142 ~~~G~T~L~~A~~~g~-------~~~v~~Ll~~gad~------------------------------------------- 171 (221)
T d1iknd_ 142 PCNGRTALHLAVDLQN-------PDLVSLLLKCGADV------------------------------------------- 171 (221)
T ss_dssp TTTCCCHHHHHHHTTC-------HHHHHHHHTTTCCS-------------------------------------------
T ss_pred ccCCCCcccccccccc-------HHHHHHHHhcCCcc-------------------------------------------
Confidence 5789999999999999 79999998777553
Q ss_pred HhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHHhh
Q 043901 239 KALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKILDT 301 (331)
Q Consensus 239 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ 301 (331)
+.+|..|+||||+|++.++.+++++|++.
T Consensus 172 ----------------------------------~~~~~~G~tpl~~A~~~~~~~~~~~l~~~ 200 (221)
T d1iknd_ 172 ----------------------------------NRVTYQGYSPYQLTWGRPSTRIQQQLGQL 200 (221)
T ss_dssp ----------------------------------CCCCTTCCCGGGGCTTSSCHHHHHHHHTT
T ss_pred ----------------------------------cccCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 34567899999999999999999999984
|
| >d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Cell cycle inhibitor p19ink4D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=5.6e-28 Score=187.71 Aligned_cols=152 Identities=13% Similarity=0.138 Sum_probs=136.0
Q ss_pred chhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcC
Q 043901 60 HGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGE 139 (331)
Q Consensus 60 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~ 139 (331)
+.|+.||..|+.++|+.|++.++.+++.+|..|.||||+|+ .|+.+++++|++.++++ +..+..|.+|+++++..+
T Consensus 4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~---~~~~~~~~~~l~~~~~~~ 79 (156)
T d1bd8a_ 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASP---NVQDTSGTSPVHDAARTG 79 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-ccccccccccccccccc---cccccccccccccccccc
Confidence 35999999999999999999766569999999999999986 58899999999999998 899999999999999999
Q ss_pred CHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCcc
Q 043901 140 YFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKC 219 (331)
Q Consensus 140 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (331)
+.++++++++.+++ ++.+|..|.||||+|+..++ .++++.|+. +.+.
T Consensus 80 ~~~~~~~~l~~~~~-~n~~~~~~~t~L~~A~~~~~-------~~i~~~L~~-~~~~------------------------ 126 (156)
T d1bd8a_ 80 FLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGH-------TAVVSFLAA-ESDL------------------------ 126 (156)
T ss_dssp CHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTC-------HHHHHHHHT-TSCT------------------------
T ss_pred cccccccccccccc-cccccCCCCeeecccccccc-------ccccccccc-cccc------------------------
Confidence 99999999999988 99999999999999999998 688877653 2221
Q ss_pred CCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHHHHHHHH
Q 043901 220 GQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAEMVKKIL 299 (331)
Q Consensus 220 ~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll 299 (331)
+.+|..|+||||+|++.|+.+++++|+
T Consensus 127 -----------------------------------------------------~~~d~~G~TpL~~A~~~g~~~iv~~Ll 153 (156)
T d1bd8a_ 127 -----------------------------------------------------HRRDARGLTPLELALQRGAQDLVDILQ 153 (156)
T ss_dssp -----------------------------------------------------TCCCTTSCCHHHHHHHSCCHHHHHHHH
T ss_pred -----------------------------------------------------cccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 345778999999999999999999999
Q ss_pred hh
Q 043901 300 DT 301 (331)
Q Consensus 300 ~~ 301 (331)
++
T Consensus 154 ~h 155 (156)
T d1bd8a_ 154 GH 155 (156)
T ss_dssp TT
T ss_pred hh
Confidence 73
|
| >d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Cell cycle inhibitor p19ink4D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.3e-26 Score=179.85 Aligned_cols=152 Identities=17% Similarity=0.175 Sum_probs=137.6
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcC
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKD 81 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 81 (331)
-+.|+.||..|+++.|+.+++..+. + ++.. ..|+||||+|+. |+.+++++|++.+
T Consensus 3 g~~L~~Aa~~g~~~~vk~lL~~~~~----------------------~-~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~ 58 (156)
T d1bd8a_ 3 GDRLSGAAARGDVQEVRRLLHRELV----------------------H-PDALNRFGKTALQVMMF-GSTAIALELLKQG 58 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCC----------------------C-TTCCCTTSCCHHHHSCT-TCHHHHHHHHHTT
T ss_pred cHHHHHHHHcCCHHHHHHHHHhCCC----------------------C-CCccCCCCCcccccccc-ccccccccccccc
Confidence 3679999999999999999987532 2 4455 889999999875 8899999999999
Q ss_pred cccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCC
Q 043901 82 RELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNEN 161 (331)
Q Consensus 82 ~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~ 161 (331)
.+ ++..+..|.+|+++++..++.+++++++++|+++ +.+|..|.||||+|+..|+.+++++|+ .|++ ++.+|.+
T Consensus 59 ~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~---n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~-~~~~d~~ 132 (156)
T d1bd8a_ 59 AS-PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV---NVPDGTGALPIHLAVQEGHTAVVSFLA-AESD-LHRRDAR 132 (156)
T ss_dssp CC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS---CCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSC-TTCCCTT
T ss_pred cc-cccccccccccccccccccccccccccccccccc---ccccCCCCeeecccccccccccccccc-cccc-ccccCCC
Confidence 98 9999999999999999999999999999999998 999999999999999999999999887 5666 9999999
Q ss_pred CccHhHHHhcCCCcccccccchhHHHHHhh
Q 043901 162 GLTRLHILASKPTAFKRGSRLGLFDRIIHY 191 (331)
Q Consensus 162 g~t~l~~A~~~~~~~~~~~~~~~~~~li~~ 191 (331)
|+||||+|+..++ .++++.|+++
T Consensus 133 G~TpL~~A~~~g~-------~~iv~~Ll~h 155 (156)
T d1bd8a_ 133 GLTPLELALQRGA-------QDLVDILQGH 155 (156)
T ss_dssp SCCHHHHHHHSCC-------HHHHHHHHTT
T ss_pred CCCHHHHHHHcCC-------HHHHHHHHhh
Confidence 9999999999999 7999888753
|
| >d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: GA bindinig protein (GABP) beta 1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.94 E-value=4e-27 Score=182.12 Aligned_cols=56 Identities=13% Similarity=0.179 Sum_probs=47.2
Q ss_pred cCCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHHHcCccccccC
Q 043901 275 QSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENRQTSIYKL 331 (331)
Q Consensus 275 ~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~~~~iv~l 331 (331)
++..|+||||+|+..|+.+++++|++ .|+|++.+|+.|+||||+|+.+|+.+|+++
T Consensus 96 ~~~~g~T~L~~A~~~g~~~iv~~ll~-~gad~~~~d~~g~Tpl~~A~~~g~~eiv~l 151 (153)
T d1awcb_ 96 KDMLKMTALHWATEHNHQEVVELLIK-YGADVHTQSKFCKTAFDISIDNGNEDLAEI 151 (153)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred ccccCchHHHhhhhcchhheeeeccc-cccCCcccCCCCCCHHHHHHHcCCHHHHHh
Confidence 35568888888888888888888888 688888888889999999999888888864
|
| >d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: RNase L, 2-5a-dependent ribonuclease species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.3e-25 Score=191.21 Aligned_cols=218 Identities=16% Similarity=0.131 Sum_probs=172.5
Q ss_pred chhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccH-----------HHH-HHhhhCCCcceeccCCCchhhhhhccC
Q 043901 2 EVNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQ-----------LYT-LQQQLGKPILYIRLGGNHGRKYIKPLG 69 (331)
Q Consensus 2 ~~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~-----------~v~-Ll~~~~~~~~~~~~~g~t~Lh~A~~~g 69 (331)
+.++||.|+..|+.+.++.+++..+.... ......++ ... +++.. .........|.|+++.|+..|
T Consensus 39 g~tpL~~A~~~~~~eiv~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~a~~~~ 116 (285)
T d1wdya_ 39 GWTPLHNAVQMSREDIVELLLRHGADPVL-RKKNGATPFLLAAIAGSVKLLKLFLSKG-ADVNECDFYGFTAFMEAAVYG 116 (285)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCBCTTCCBHHHHHHHTT
T ss_pred CCCHHHHHHHcCCHHHhhhhccccccccc-cccccchhhHHHhhcCCccccchhhhhc-ccccccccCCCchhHHHHHhc
Confidence 35689999999999999988876655332 12222333 344 55554 332333378999999999999
Q ss_pred CHHHHHHHHhcCcccccc----------cCCCCCcHHHHHHhcCCHHHHHHHHhc-CCCccccccccCCCCcHHHHHHhc
Q 043901 70 NEAMCHCTASKDRELISV----------RNNDSETPLFLAALHGNMDAFLCLRSF-NQAKDNRQCRKNNGETILHSAISG 138 (331)
Q Consensus 70 ~~~~v~~Ll~~~~~~~~~----------~d~~g~tpLh~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~~~g~t~Lh~A~~~ 138 (331)
+...+..++..... ++. .+..|.||||+|++.|+.+++++|+++ |+++ +..+..|.++++.+...
T Consensus 117 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i---~~~~~~~~~~~~~~~~~ 192 (285)
T d1wdya_ 117 KVKALKFLYKRGAN-VNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV---NACDNMGRNALIHALLS 192 (285)
T ss_dssp CHHHHHHHHHTTCC-TTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCT---TCCCTTSCCHHHHHHHC
T ss_pred chhhhhhhhhhccc-ccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCc---ccccCCCCccccccccc
Confidence 99999999987654 333 355699999999999999999999975 7777 99999999988766543
Q ss_pred ----CCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhh-cccCcCCCCCCCccccccccc
Q 043901 139 ----EYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYY-KTKGEANDEESPECNRSISFS 213 (331)
Q Consensus 139 ----~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~-~~~~~~~~~~~~~~~~~~~~~ 213 (331)
+..+++++|+++|++ ++.++..|.||||.|+..++ .++++.++... .++
T Consensus 193 ~~~~~~~~i~~~Li~~ga~-~n~~~~~g~t~L~~a~~~~~-------~~~v~~lL~~~g~di------------------ 246 (285)
T d1wdya_ 193 SDDSDVEAITHLLLDHGAD-VNVRGERGKTPLILAVEKKH-------LGLVQRLLEQEHIEI------------------ 246 (285)
T ss_dssp SCTTTHHHHHHHHHHTTCC-SSCCCTTSCCHHHHHHHTTC-------HHHHHHHHHSSSCCT------------------
T ss_pred ccchHHHHHHHHHHHCCCC-CCccCCCCCCccchhhhcCc-------HHHHHHHHHcCCCCC------------------
Confidence 445799999999998 99999999999999999998 78888887643 221
Q ss_pred CCCCccCCCCCcchhhHHHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhhhhccCCCCchHHHHHHhcChHH
Q 043901 214 KNDDKCGQFFPPNYAACFLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEKKDQQSGRNETAILIAAKMGVAE 293 (331)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~tpLh~A~~~g~~~ 293 (331)
+.+|.+|.||||+|+++|+.+
T Consensus 247 -----------------------------------------------------------n~~d~~G~TpL~~A~~~~~~e 267 (285)
T d1wdya_ 247 -----------------------------------------------------------NDTDSDGKTALLLAVELKLKK 267 (285)
T ss_dssp -----------------------------------------------------------TCCCTTSCCHHHHHHHTTCHH
T ss_pred -----------------------------------------------------------cCCCCCCCCHHHHHHHcCCHH
Confidence 445778999999999999999
Q ss_pred HHHHHHhhCCcccccccc
Q 043901 294 MVKKILDTFPVAMQDMDS 311 (331)
Q Consensus 294 ~v~~Ll~~~~~~~~~~d~ 311 (331)
+|++||+ .|+|+|++|.
T Consensus 268 iv~~Ll~-~GAd~n~~d~ 284 (285)
T d1wdya_ 268 IAELLCK-RGASTDCGDL 284 (285)
T ss_dssp HHHHHHH-HSSCSCCSSC
T ss_pred HHHHHHH-CCCCCCcccC
Confidence 9999999 6999999884
|
| >d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Swi6 ankyrin-repeat fragment species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=2.3e-27 Score=204.15 Aligned_cols=187 Identities=14% Similarity=0.110 Sum_probs=121.3
Q ss_pred cccc-CCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCH---HHHHHHHHhCCcccccccC
Q 043901 85 ISVR-NNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYF---SIAFQIMRAYPDLVNSVNE 160 (331)
Q Consensus 85 ~~~~-d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~---~~~~~Ll~~~~~~~~~~~~ 160 (331)
+|.. |..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||.|+..++. +.+..+++.....+..+|.
T Consensus 99 vn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~---~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~ 175 (301)
T d1sw6a_ 99 LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR---LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDS 175 (301)
T ss_dssp SCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECT
T ss_pred cCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC---CcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhccc
Confidence 6755 899999999999999999999999999999 99999999999999987752 2223333332334778899
Q ss_pred CCccHhHHHhcCCCcccccccchhH--------HHHHhhhcccCc--CCCCCCCcccccccccCCCCccCCCCCcchhhH
Q 043901 161 NGLTRLHILASKPTAFKRGSRLGLF--------DRIIHYYKTKGE--ANDEESPECNRSISFSKNDDKCGQFFPPNYAAC 230 (331)
Q Consensus 161 ~g~t~l~~A~~~~~~~~~~~~~~~~--------~~li~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (331)
.|+||||+++..+..... .... ..+......... ......+.+. .... ..
T Consensus 176 ~g~t~lh~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----------------~~~~-~~ 235 (301)
T d1sw6a_ 176 MNRTILHHIIITSGMTGC---SAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPND----------------KNGE-RK 235 (301)
T ss_dssp TCCCHHHHHHHHHTSTTC---HHHHHHHHHHHHHHHHHGGGCCEEEC---------------------------------
T ss_pred ccCCHHHHHHHHhCcccc---HHHHHHHHHHHHHHHHhcCCcchhcccccccchhHH----------------HHhc-ch
Confidence 999999998876652111 1111 112222111110 0000000000 0000 00
Q ss_pred HHHHHHHHHhchhhhccCCccchhhhhhhhchhhHHHHHhh-hhccCCCCchHHHHHHhcChHHHHHHHHhhCCcccccc
Q 043901 231 FLFFWLLMKALPIVLGLGLKNFKISIIPYIKKVQGLKFMEK-KDQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDM 309 (331)
Q Consensus 231 ~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~ 309 (331)
.. ..........+.. .|.+|..|+||||+|++.|+.++|++|++ .|+|++.+
T Consensus 236 ~~--------------------------~~~~~~~~~~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~-~GAd~~~~ 288 (301)
T d1sw6a_ 236 DS--------------------------ILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLD-YGADPFIA 288 (301)
T ss_dssp CH--------------------------HHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHH-TTCCTTCC
T ss_pred HH--------------------------HHHHHhhHHHHhcCccCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCC
Confidence 00 0000000001111 16789999999999999999999999999 79999999
Q ss_pred ccCCCcHHHHHH
Q 043901 310 DSEKKNLVLLAV 321 (331)
Q Consensus 310 d~~g~t~l~~A~ 321 (331)
|+.|+|||+||+
T Consensus 289 n~~G~Tpl~~A~ 300 (301)
T d1sw6a_ 289 NKSGLRPVDFGA 300 (301)
T ss_dssp CTTSCCGGGGTC
T ss_pred CCCCCCHHHHcC
Confidence 999999999985
|
| >d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: GA bindinig protein (GABP) beta 1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.94 E-value=4.1e-26 Score=176.34 Aligned_cols=123 Identities=19% Similarity=0.174 Sum_probs=113.8
Q ss_pred CchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhc
Q 043901 59 NHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISG 138 (331)
Q Consensus 59 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~ 138 (331)
.||||.||+.|+.++|++||++|++ ++ .|..|.||||+|+..++.++++.++...... ...+..+.++++.++..
T Consensus 3 ~t~L~~Aa~~g~~~~v~~LL~~ga~-~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 77 (153)
T d1awcb_ 3 GKKLLEAARAGQDDEVRILMANGAP-FT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR---DARTKVDRTPLHMAASE 77 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCC-CC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT---TCCCTTCCCHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHcCCC-cc-cccCCCccccccccccccccccccccccccc---ccccccccccccccccc
Confidence 4999999999999999999999987 66 6899999999999999999999999988877 77788889999999999
Q ss_pred CCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcc
Q 043901 139 EYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKT 194 (331)
Q Consensus 139 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~ 194 (331)
.+.++++++...+.+ .+.+|..|.||||+|+..++ .++++.++..+.+
T Consensus 78 ~~~~~~~~l~~~~~~-~~~~~~~g~T~L~~A~~~g~-------~~iv~~ll~~gad 125 (153)
T d1awcb_ 78 GHANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNH-------QEVVELLIKYGAD 125 (153)
T ss_dssp TCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTC-------HHHHHHHHHTTCC
T ss_pred ccceeeecccccCCc-cccccccCchHHHhhhhcch-------hheeeeccccccC
Confidence 999999999999997 99999999999999999999 7999988877754
|
| >d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: p18ink4C(ink6) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.1e-25 Score=174.55 Aligned_cols=153 Identities=18% Similarity=0.173 Sum_probs=141.5
Q ss_pred hHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcCc
Q 043901 4 NSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKDR 82 (331)
Q Consensus 4 ~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~ 82 (331)
++||.|+..|+.+.++.|++.+.+ ++.+ ..|.||||+|+ .|+.+++++|++.++
T Consensus 3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d------------------------~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a 57 (156)
T d1ihba_ 3 NELASAAARGDLEQLTSLLQNNVN------------------------VNAQNGFGRTALQVMK-LGNPEIARRLLLRGA 57 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHTTSCCC------------------------TTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCC------------------------cCccCCcccccccccc-ccccccccccccccc
Confidence 789999999999999999987532 4555 88999999886 789999999999999
Q ss_pred ccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCC
Q 043901 83 ELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENG 162 (331)
Q Consensus 83 ~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g 162 (331)
+ ++..+..|.+|++.++..+..+++++|++.+.++ +..+..|.+|+|+|+..++.+++++|+++++.+.+.+|..|
T Consensus 58 ~-~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g 133 (156)
T d1ihba_ 58 N-PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV---NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKG 133 (156)
T ss_dssp C-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTS
T ss_pred c-cccccccCcccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccccccCCCC
Confidence 8 9999999999999999999999999999999988 99999999999999999999999999999987799999999
Q ss_pred ccHhHHHhcCCCcccccccchhHHHHHhhh
Q 043901 163 LTRLHILASKPTAFKRGSRLGLFDRIIHYY 192 (331)
Q Consensus 163 ~t~l~~A~~~~~~~~~~~~~~~~~~li~~~ 192 (331)
+||||+|+..++ .++++.|+..+
T Consensus 134 ~TpL~~A~~~~~-------~~iv~~Ll~~G 156 (156)
T d1ihba_ 134 DTACDLARLYGR-------NEVVSLMQANG 156 (156)
T ss_dssp CCHHHHHHHTTC-------HHHHHHHHHTC
T ss_pred CCHHHHHHHcCC-------HHHHHHHHhcC
Confidence 999999999999 79999988754
|
| >d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Myotrophin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.93 E-value=1.9e-26 Score=170.03 Aligned_cols=108 Identities=17% Similarity=0.116 Sum_probs=104.2
Q ss_pred CchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhc
Q 043901 59 NHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISG 138 (331)
Q Consensus 59 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~ 138 (331)
.|||++|+..|+.++|++|++.|++ ++.+|..|.||||+|+..|+.+++++|++.|+++ +.+|..|+||||+|+..
T Consensus 3 ~tpL~~A~~~g~~~~v~~Ll~~g~d-~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~di---n~~d~~g~tpLh~A~~~ 78 (118)
T d1myoa_ 3 DKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI---NAPDKHHITPLLSAVYE 78 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTTCC-CCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTT---TCCSSSCSCHHHHHHTT
T ss_pred ChHHHHHHHCCCHHHHHHHHHhhhc-ccccccccccccccccccccccccccccccccee---eecccccccchhhhhhc
Confidence 5899999999999999999999988 9999999999999999999999999999999998 99999999999999999
Q ss_pred CCHHHHHHHHHhCCcccccccCCCccHhHHHhc
Q 043901 139 EYFSIAFQIMRAYPDLVNSVNENGLTRLHILAS 171 (331)
Q Consensus 139 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~ 171 (331)
|+.+++++|+++|++ ++.+|.+|+||||+|..
T Consensus 79 ~~~~~v~~Ll~~Gad-~~~~d~~G~t~l~~a~~ 110 (118)
T d1myoa_ 79 GHVSCVKLLLSKGAD-KTVKGPDGLTALEATDN 110 (118)
T ss_dssp TCCHHHHHHHTTCCC-SSSSSSSTCCCCCTCSS
T ss_pred Cchhhhhhhhccccc-ceeeCCCCCCHHHHHhH
Confidence 999999999999998 99999999999999844
|
| >d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Pseudo ankyrin repeat-like family: Pseudo ankyrin repeat domain: Hypothetical protein LPG2416 species: Legionella pneumophila [TaxId: 446]
Probab=99.92 E-value=4.8e-27 Score=205.91 Aligned_cols=142 Identities=8% Similarity=-0.059 Sum_probs=107.8
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcC
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKD 81 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 81 (331)
..+|+.|+..|+.+.++.+-. |++.+ ..++.. ..|.||||+||..|+.++|++|++.|
T Consensus 91 ~t~L~~Aa~~g~~~~~~~~~~-------------------L~~~~--~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g 149 (346)
T d2ajaa1 91 EVICFVAAITGCSSALDTLCL-------------------LLTSD--EIVKVIQAENYQAFRLAAENGHLHVLNRLCELA 149 (346)
T ss_dssp HHHHHHHHHHCCHHHHHHHTT-------------------C--CC--SSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSC
T ss_pred CcHHHHHHHhCCHHHHHHHHH-------------------HHhCC--CcccccCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 356788888888766544200 22222 335556 88999999999999999999999999
Q ss_pred cccccccC--CCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCccccccc
Q 043901 82 RELISVRN--NDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVN 159 (331)
Q Consensus 82 ~~~~~~~d--~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~ 159 (331)
++ ++..+ ..|.||||+|+.+|+.+++++|++.|++....+..+.++.||+|.|+..|+.+++++|++.|++ ++
T Consensus 150 ~~-~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~-~~--- 224 (346)
T d2ajaa1 150 PT-EIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM-LA--- 224 (346)
T ss_dssp TT-THHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH-HH---
T ss_pred CC-ccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCC-cc---
Confidence 97 77765 4599999999999999999999999986533345566778899999999999999999998876 43
Q ss_pred CCCccHhHHHhcCCC
Q 043901 160 ENGLTRLHILASKPT 174 (331)
Q Consensus 160 ~~g~t~l~~A~~~~~ 174 (331)
++.+.+...++
T Consensus 225 ----~~~~~~~~~~~ 235 (346)
T d2ajaa1 225 ----YAEIHEFEYGE 235 (346)
T ss_dssp ----HHHHCTTTTTT
T ss_pred ----hHHHHHHHcCc
Confidence 34444444444
|
| >d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Cell cycle inhibitor p16ink4A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=7.3e-26 Score=168.67 Aligned_cols=120 Identities=9% Similarity=0.044 Sum_probs=111.7
Q ss_pred CCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCC-cHHHHHH
Q 043901 58 GNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGE-TILHSAI 136 (331)
Q Consensus 58 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~-t~Lh~A~ 136 (331)
+.++||+|+..|+.+++++|+++|++ +|.+|..|.||+|+|+ .|+.+++++|+++|+++ +.++..+. ||||+|+
T Consensus 3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad-~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~---~~~~~~~~~~~L~~A~ 77 (125)
T d1bi7b_ 3 SADWLATAAARGRVEEVRALLEAGAN-PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP---NCADPATLTRPVHDAA 77 (125)
T ss_dssp STTHHHHHHHHTCHHHHHHHHTTTCC-TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC---CCCCTTTCCCHHHHHH
T ss_pred ChhHHHHHHHCCCHHHHHHHHHcCCc-cccccccccccccccc-ccccccccccccccccc---cccccccccccccccc
Confidence 56899999999999999999999987 9999999999999775 79999999999999998 88888776 6999999
Q ss_pred hcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHh
Q 043901 137 SGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIH 190 (331)
Q Consensus 137 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~ 190 (331)
+.|+.+++++|++.|++ ++.+|..|+||||+|+.+|+ .++++.|+.
T Consensus 78 ~~g~~~~v~~Ll~~ga~-~~~~d~~G~T~l~~A~~~g~-------~~~v~~Lls 123 (125)
T d1bi7b_ 78 REGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGH-------RDVARYLRA 123 (125)
T ss_dssp HHTCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTC-------HHHHHHHSS
T ss_pred ccccccccccccccccc-cccccCCCCCHHHHHHHcCC-------HHHHHHHHh
Confidence 99999999999999988 99999999999999999999 789888753
|
| >d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 53BP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.9e-24 Score=162.01 Aligned_cols=122 Identities=14% Similarity=0.022 Sum_probs=110.5
Q ss_pred chhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcC
Q 043901 60 HGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGE 139 (331)
Q Consensus 60 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~ 139 (331)
++|+.|+..|+.++|++|+++|++ +|.+|..|.||||+|+..|+.+++++|++.|+++ +.+|.+|+||||+|+..|
T Consensus 3 ~lL~~A~~~G~~~~v~~Ll~~g~d-~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~---~~~d~~g~tpLh~A~~~g 78 (130)
T d1ycsb1 3 ALLLDSSLEGEFDLVQRIIYEVDD-PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV---NAADSDGWTPLHCAASCN 78 (130)
T ss_dssp HHHHHHHHHTCHHHHHHHTSTTSS-CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT---TCCCTTCCCHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHcCCC-cccccccccccccccccccccccccccccccccc---ccccccCcccccccchhh
Confidence 679999999999999999999998 9999999999999999999999999999999998 999999999999999999
Q ss_pred CHHHHHHHHHhCCcccccccC-CCccHhHHH--hcCCCcccccccchhHHHHHhhhc
Q 043901 140 YFSIAFQIMRAYPDLVNSVNE-NGLTRLHIL--ASKPTAFKRGSRLGLFDRIIHYYK 193 (331)
Q Consensus 140 ~~~~~~~Ll~~~~~~~~~~~~-~g~t~l~~A--~~~~~~~~~~~~~~~~~~li~~~~ 193 (331)
+.+++++|+++|++ ++..+. .|+||++++ ...|+ .++++.|+....
T Consensus 79 ~~~~v~~Ll~~ga~-v~~~~~~~~~~~~~~~~a~~~g~-------~eiv~~L~~~~~ 127 (130)
T d1ycsb1 79 NVQVCKFLVESGAA-VFAMTYSDMQTAADKCEEMEEGY-------TQCSQFLYGVQE 127 (130)
T ss_dssp CHHHHHHHHHTTCC-TTCCCSSSCCCHHHHCCSSSTTC-------CCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC-cccccCCCCCCHHHHHHHHHcCh-------HHHHHHHHhHHH
Confidence 99999999999998 887664 588887665 56666 689998876543
|
| >d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: bcl-3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=2.8e-23 Score=169.36 Aligned_cols=185 Identities=13% Similarity=0.119 Sum_probs=138.5
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHh----cCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCCCccHh
Q 043901 91 DSETPLFLAALHGNMDAFLCLRS----FNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRL 166 (331)
Q Consensus 91 ~g~tpLh~A~~~~~~~~~~~Ll~----~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l 166 (331)
+|.||||+|+.+|+.++++.|++ .|+++ +.+|.+|.||||+|+..|+.+++++|++.|+. .+..+..|.+++
T Consensus 2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~i---n~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~-~~~~~~~~~~~~ 77 (228)
T d1k1aa_ 2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL---DIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS-PMALDRHGQTAA 77 (228)
T ss_dssp TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS---CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CccCCCCCccceehhccccccccccccccccc-cccccccccccc
Confidence 69999999999999999998875 78888 99999999999999999999999999999998 899999999999
Q ss_pred HHHhcCCCcccccccchhHHHHHhhhcccCcCCCCCCCcccccccccCCCCccCCCCCcchhhHHHHHHHHHHhchhhhc
Q 043901 167 HILASKPTAFKRGSRLGLFDRIIHYYKTKGEANDEESPECNRSISFSKNDDKCGQFFPPNYAACFLFFWLLMKALPIVLG 246 (331)
Q Consensus 167 ~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~g 246 (331)
+.|....+ ..++................... .....+...
T Consensus 78 ~~a~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~------------ 117 (228)
T d1k1aa_ 78 HLACEHRS-------PTCLRALLDSAAPGTLDLEARNY---------------------DGLTALHVA------------ 117 (228)
T ss_dssp HHHHHTTC-------HHHHHHHHHHSCTTSCCTTCCCT---------------------TSCCHHHHH------------
T ss_pred cccccccc-------ccchhhhhhcccccccccccccc---------------------ccccccccc------------
Confidence 99999987 56666554443322211110000 000001000
Q ss_pred cCCccchhhhhhhhchhhHHHHHhhh-----hccCCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHH
Q 043901 247 LGLKNFKISIIPYIKKVQGLKFMEKK-----DQQSGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAV 321 (331)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~ 321 (331)
...........+... ......|.+||+.|+..+..++++.+++ .|.+++.+|..|.||||+|+
T Consensus 118 -----------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~-~~~~~~~~d~~g~t~L~~A~ 185 (228)
T d1k1aa_ 118 -----------VNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ-HGANVNAQMYSGSSALHSAS 185 (228)
T ss_dssp -----------HHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCBCTTSCBHHHHHH
T ss_pred -----------cccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhh-hccccccccccCcchHHHHH
Confidence 000000111111111 3345679999999999999999999999 69999999999999999999
Q ss_pred HcCccccccC
Q 043901 322 ENRQTSIYKL 331 (331)
Q Consensus 322 ~~~~~~iv~l 331 (331)
.+|+.+++++
T Consensus 186 ~~g~~~~v~~ 195 (228)
T d1k1aa_ 186 GRGLLPLVRT 195 (228)
T ss_dssp HHTCHHHHHH
T ss_pred HcCCHHHHHH
Confidence 9999998863
|
| >d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Pyk2-associated protein beta species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.91 E-value=1.1e-23 Score=162.10 Aligned_cols=133 Identities=16% Similarity=0.073 Sum_probs=114.5
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhc---cCCHHHHHHHH
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKP---LGNEAMCHCTA 78 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~---~g~~~~v~~Ll 78 (331)
+..|+.|++.+++..+..++.++.+... ....... ..|+||||+|+. .|+.+++++|+
T Consensus 7 l~~L~~Av~~~dl~~l~~~~~~g~d~~~------------------~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll 68 (154)
T d1dcqa1 7 LHSLCEAVKTRDIFGLLQAYADGVDLTE------------------KIPLANGHEPDETALHLAVRSVDRTSLHIVDFLV 68 (154)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTS------------------BCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHcCCCcCC------------------CCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHH
Confidence 3568999999999999999987654321 1122233 679999999996 47889999999
Q ss_pred hcCcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCccccc
Q 043901 79 SKDRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNS 157 (331)
Q Consensus 79 ~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~ 157 (331)
+.|++ +|.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|++.|+.+++++|++.+....+.
T Consensus 69 ~~gad-in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~---~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~~~~ 143 (154)
T d1dcqa1 69 QNSGN-LDKQTGKGSTALHYCCLTDNAECLKLLLRGKASI---EIANESGETPLDIAKRLKHEHCEELLTQALSGRFNS 143 (154)
T ss_dssp HHCSC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCCCS
T ss_pred HcCCC-hhhhhhhhccccccccccccccccccccccCccc---cccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCCc
Confidence 99998 9999999999999999999999999999999999 999999999999999999999999999987663333
|
| >d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Neurogenic locus notch receptor domain species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.90 E-value=9.5e-23 Score=165.34 Aligned_cols=157 Identities=15% Similarity=0.085 Sum_probs=120.9
Q ss_pred hhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhcC
Q 043901 3 VNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASKD 81 (331)
Q Consensus 3 ~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~ 81 (331)
.++||.||..|+.+.++.|+..+.. ++.+ ..+.++++.++..++...........
T Consensus 24 ~t~L~~A~~~g~~e~v~~Ll~~g~~------------------------~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (209)
T d1ot8a_ 24 ETSLHLAARFARADAAKRLLDAGAD------------------------ANSQDNTGRTPLHAAVAADAMGVFQILLRNR 79 (209)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCC------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHTCT
T ss_pred CCHHHHHHHcCCHHHHHHHHhhccc------------------------ccccccccccccccccccccccccccccccc
Confidence 4678888888888888888776433 3444 66778888888888877777666655
Q ss_pred cccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHHhCCcccccccCC
Q 043901 82 RELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMRAYPDLVNSVNEN 161 (331)
Q Consensus 82 ~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~ 161 (331)
..........|.++.+.+.........+.|...++++ +.++..|.|||++++..+..++++.+++.+.+ ++..|..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~---~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~-~~~~d~~ 155 (209)
T d1ot8a_ 80 ATNLNARMHDGTTPLILAARLAIEGMVEDLITADADI---NAADNSGKTALHWAAAVNNTEAVNILLMHHAN-RDAQDDK 155 (209)
T ss_dssp TCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCT---TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTT
T ss_pred ccccccccccccccccccccccchhhhhhhhhhcccc---cccCCCCCCcchhhcccCcceeeeeecccccc-ccccccc
Confidence 5545555666778888888888888888888888877 77888888888888888888888888888777 7888888
Q ss_pred CccHhHHHhcCCCcccccccchhHHHHHhhhcc
Q 043901 162 GLTRLHILASKPTAFKRGSRLGLFDRIIHYYKT 194 (331)
Q Consensus 162 g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~ 194 (331)
|.||||+|+..|+ .++++.|+..+.+
T Consensus 156 g~TpL~~A~~~g~-------~~~v~~Ll~~gad 181 (209)
T d1ot8a_ 156 DETPLFLAAREGS-------YEASKALLDNFAN 181 (209)
T ss_dssp CCCHHHHHHHTTC-------HHHHHHHHHTTCC
T ss_pred cccccchhccccH-------HHHHHHHHHCCCC
Confidence 8888888888887 6888888776654
|
| >d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Myotrophin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.90 E-value=9.9e-25 Score=160.69 Aligned_cols=48 Identities=15% Similarity=0.041 Sum_probs=40.6
Q ss_pred CCCCchHHHHHHhcChHHHHHHHHhhCCccccccccCCCcHHHHHHHcC
Q 043901 276 SGRNETAILIAAKMGVAEMVKKILDTFPVAMQDMDSEKKNLVLLAVENR 324 (331)
Q Consensus 276 ~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~l~~A~~~~ 324 (331)
|..|+||||+|+.+|+.+++++|++ .|+|++.+|.+|+||||+|....
T Consensus 65 d~~g~tpLh~A~~~~~~~~v~~Ll~-~Gad~~~~d~~G~t~l~~a~~~~ 112 (118)
T d1myoa_ 65 DKHHITPLLSAVYEGHVSCVKLLLS-KGADKTVKGPDGLTALEATDNQA 112 (118)
T ss_dssp SSSCSCHHHHHHTTTCCHHHHHHHT-TCCCSSSSSSSTCCCCCTCSSTT
T ss_pred ccccccchhhhhhcCchhhhhhhhc-ccccceeeCCCCCCHHHHHhHHH
Confidence 4468888888888888999999999 69999999999999999885433
|
| >d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Cell cycle inhibitor p16ink4A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=2.8e-23 Score=154.49 Aligned_cols=119 Identities=15% Similarity=0.114 Sum_probs=107.1
Q ss_pred chhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhc
Q 043901 2 EVNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASK 80 (331)
Q Consensus 2 ~~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~ 80 (331)
..+.||.|+..|+.+.++.+++.+.+ ++.+ ..|.||||+|+ .|+.+++++|++.
T Consensus 3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad------------------------~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ 57 (125)
T d1bi7b_ 3 SADWLATAAARGRVEEVRALLEAGAN------------------------PNAPNSYGRRPIQVMM-MGSARVAELLLLH 57 (125)
T ss_dssp STTHHHHHHHHTCHHHHHHHHTTTCC------------------------TTCCCSSSCCTTTSSC-TTCHHHHHHHHTT
T ss_pred ChhHHHHHHHCCCHHHHHHHHHcCCc------------------------cccccccccccccccc-ccccccccccccc
Confidence 35789999999999999999986432 4455 78999999775 7999999999999
Q ss_pred CcccccccCCCCC-cHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCHHHHHHHHH
Q 043901 81 DRELISVRNNDSE-TPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKNNGETILHSAISGEYFSIAFQIMR 149 (331)
Q Consensus 81 ~~~~~~~~d~~g~-tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~~Ll~ 149 (331)
|++ ++.++..|. ||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++
T Consensus 58 ga~-~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~---~~~d~~G~T~l~~A~~~g~~~~v~~Lls 123 (125)
T d1bi7b_ 58 GAE-PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARL---DVRDAWGRLPVDLAEELGHRDVARYLRA 123 (125)
T ss_dssp TCC-CCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCS---SCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred ccc-ccccccccccccccccccccccccccccccccccc---ccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 998 999988876 6999999999999999999999998 9999999999999999999999999964
|
| >d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 53BP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=8.5e-23 Score=152.87 Aligned_cols=122 Identities=13% Similarity=0.075 Sum_probs=107.1
Q ss_pred chhHHHHHHhcCCHHHHHHHHHcCCccccccccCCccHHHHHHhhhCCCcceec-cCCCchhhhhhccCCHHHHHHHHhc
Q 043901 2 EVNSLSKFAVRGQWDNIVQAYENNPMSREAKLTNLETQLYTLQQQLGKPILYIR-LGGNHGRKYIKPLGNEAMCHCTASK 80 (331)
Q Consensus 2 ~~~~L~~a~~~g~~~~~~~ll~~~~~~~~~~~~~~~t~~v~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~ 80 (331)
++..|+.|++.|+.+.++.+++.+. + ++.+ .+|.||||+|+..|+.+++++|++.
T Consensus 1 pl~lL~~A~~~G~~~~v~~Ll~~g~-----------------------d-~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~ 56 (130)
T d1ycsb1 1 PLALLLDSSLEGEFDLVQRIIYEVD-----------------------D-PSLPNDEGITALHNAVCAGHTEIVKFLVQF 56 (130)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTSTTS-----------------------S-CCCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred ChHHHHHHHHcCCHHHHHHHHHcCC-----------------------C-cccccccccccccccccccccccccccccc
Confidence 3567999999999999999888743 2 4566 8899999999999999999999999
Q ss_pred CcccccccCCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccC-CCCcHHHHH--HhcCCHHHHHHHHHhC
Q 043901 81 DRELISVRNNDSETPLFLAALHGNMDAFLCLRSFNQAKDNRQCRKN-NGETILHSA--ISGEYFSIAFQIMRAY 151 (331)
Q Consensus 81 ~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~-~g~t~Lh~A--~~~~~~~~~~~Ll~~~ 151 (331)
|++ ++.+|.+|+||||+|+.+|+.+++++|+++|+++ +..+. .+.||++++ ...|+.+++++|++..
T Consensus 57 g~~-~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v---~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~ 126 (130)
T d1ycsb1 57 GVN-VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV---FAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ 126 (130)
T ss_dssp TCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred ccc-cccccccCcccccccchhhHHHHHHHHHHcCCCc---ccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence 998 9999999999999999999999999999999998 76654 588887665 5778999999998753
|
| >d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Pyk2-associated protein beta species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.87 E-value=7.8e-22 Score=151.52 Aligned_cols=122 Identities=14% Similarity=0.050 Sum_probs=109.2
Q ss_pred hhhhhhccCCHHHHHHHHhcCccccccc------CCCCCcHHHHHHhc---CCHHHHHHHHhcCCCccccccccCCCCcH
Q 043901 61 GRKYIKPLGNEAMCHCTASKDRELISVR------NNDSETPLFLAALH---GNMDAFLCLRSFNQAKDNRQCRKNNGETI 131 (331)
Q Consensus 61 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~------d~~g~tpLh~A~~~---~~~~~~~~Ll~~g~~~~~~~~~~~~g~t~ 131 (331)
.|+.|++.++...+..++..|.+ ++.. +..|.||||+|+.. ++.+++++|+++|+++ +.+|..|.||
T Consensus 9 ~L~~Av~~~dl~~l~~~~~~g~d-~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi---n~~d~~g~Tp 84 (154)
T d1dcqa1 9 SLCEAVKTRDIFGLLQAYADGVD-LTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL---DKQTGKGSTA 84 (154)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCC-TTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT---TCCCTTCCCH
T ss_pred HHHHHHHhCCHHHHHHHHHcCCC-cCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCCh---hhhhhhhccc
Confidence 46678899999999999988876 4443 67799999999975 6789999999999998 9999999999
Q ss_pred HHHHHhcCCHHHHHHHHHhCCcccccccCCCccHhHHHhcCCCcccccccchhHHHHHhhhcc
Q 043901 132 LHSAISGEYFSIAFQIMRAYPDLVNSVNENGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKT 194 (331)
Q Consensus 132 Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~ 194 (331)
||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..++ .++++.|+.....
T Consensus 85 Lh~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~-------~~i~~~L~~~~~~ 139 (154)
T d1dcqa1 85 LHYCCLTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKH-------EHCEELLTQALSG 139 (154)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTC-------HHHHHHHHHHHTT
T ss_pred cccccccccccccccccccCcc-ccccCCCCCCHHHHHHHcCC-------HHHHHHHHHhCCC
Confidence 9999999999999999999998 99999999999999999999 7999998876543
|
| >d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Swi6 ankyrin-repeat fragment species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.86 E-value=1e-22 Score=174.76 Aligned_cols=126 Identities=19% Similarity=0.170 Sum_probs=99.3
Q ss_pred cCCCchhhhhhccCCHHHHHHHHhcCcccccccCCCCCcHHHHHHhcCCH-------HHHHHHHhcCCCccccccccCCC
Q 043901 56 LGGNHGRKYIKPLGNEAMCHCTASKDRELISVRNNDSETPLFLAALHGNM-------DAFLCLRSFNQAKDNRQCRKNNG 128 (331)
Q Consensus 56 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~~~~-------~~~~~Ll~~g~~~~~~~~~~~~g 128 (331)
..|+||||+||..|+.++|++|+++|++ ++.+|..|.||||.|+..++. ++++++.+ .+ ..+|..|
T Consensus 105 ~~G~T~LH~Aa~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~---~~---~~~d~~g 177 (301)
T d1sw6a_ 105 EHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP---CL---ILEDSMN 177 (301)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG---GG---GEECTTC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh---hh---hhccccc
Confidence 7899999999999999999999999998 999999999999999987652 34444432 33 6788999
Q ss_pred CcHHHHHHhcCC----HH--------HHHHHHHhCCc------------------------------------ccccccC
Q 043901 129 ETILHSAISGEY----FS--------IAFQIMRAYPD------------------------------------LVNSVNE 160 (331)
Q Consensus 129 ~t~Lh~A~~~~~----~~--------~~~~Ll~~~~~------------------------------------~~~~~~~ 160 (331)
+||||+++..+. .. ++.+++..+.. .++.+|.
T Consensus 178 ~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~ 257 (301)
T d1sw6a_ 178 RTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDS 257 (301)
T ss_dssp CCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCT
T ss_pred CCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCC
Confidence 999998886543 22 23344443322 1577899
Q ss_pred CCccHhHHHhcCCCcccccccchhHHHHHhhhccc
Q 043901 161 NGLTRLHILASKPTAFKRGSRLGLFDRIIHYYKTK 195 (331)
Q Consensus 161 ~g~t~l~~A~~~~~~~~~~~~~~~~~~li~~~~~~ 195 (331)
+|+||||+|++.++ .++++.|+..+++.
T Consensus 258 ~G~TpLh~A~~~g~-------~~iv~~Ll~~GAd~ 285 (301)
T d1sw6a_ 258 NGDTCLNIAARLGN-------ISIVDALLDYGADP 285 (301)
T ss_dssp TSCCHHHHHHHHCC-------HHHHHHHHHTTCCT
T ss_pred CCCCHHHHHHHcCC-------HHHHHHHHHCCCCC
Confidence 99999999999999 79999999888663
|