Citrus Sinensis ID: 043907

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330
Protein Sequence
SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIMTSF
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccHHHHcccccHHHHHHHHHHHHHHHHcccEEEEEcHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccHHHHHHcccccHHHHHHHHHHHHHHHHcHHHEEEHcHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccccEEccHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
SLIASSVTRAIGRKVSILIGGVAFladsayggsafNIYMLIFGRLLLGVGigfgnqikggwGWRISLAMAAAPASILTIGAiflpetpnskiqrsdDHQKAQKMLQRIRGISDVKAELNDLIrasstsksitqPFKNIiqrkyrpqpvmaILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAaqlgdhggcseGYAYLILVLVCLCssgycyswgplawlvpseifpleirsagqSITVAVNFVFTFLtaqtflpmlchfkagIFFFFGGLVLIMTSF
Flexible Loop (DISEMBL)
sliassvtraigrkVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLirasstsksitqpfkNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIMTSF
Low Complexity Region (SEG)
SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAgiffffggLVLIMTSF
Disordered region (IsUnstruct)
******VTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQIKGGWGWRISLAMAAAPASILTIGAIFLP**********************************************TQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIM***
Disordered Region (DISOPRED)
SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLI***************IIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIMTSF
Disordered Region (DISEMBL)
SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQIKGGWGWRISLAMAAAPASILTIGAIFLPETPNS***************QRIRGISDVKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIMTSF
Disordered Region (DISPRO)
SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIMTSF
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIMTSF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	330	2.2.26 [Sep-21-2011]
Q07423	510	Hexose carrier protein HE	N/A	no	0.996	0.645	0.602	1e-124
Q8L7R8	514	Sugar transport protein 3	yes	no	0.987	0.634	0.547	1e-100
Q41144	523	Sugar carrier protein C O	N/A	no	0.993	0.627	0.464	1e-88
Q9SX48	517	Sugar transport protein 9	no	no	0.993	0.634	0.457	2e-88
P23586	522	Sugar transport protein 1	no	no	0.948	0.599	0.461	3e-88
O04249	513	Sugar transport protein 7	no	no	0.993	0.639	0.444	6e-87
Q9LT15	514	Sugar transport protein 1	no	no	0.993	0.638	0.439	3e-85
Q9FMX3	514	Sugar transport protein 1	no	no	0.993	0.638	0.454	1e-84
Q39228	514	Sugar transport protein 4	no	no	0.993	0.638	0.470	2e-84
O65413	508	Sugar transport protein 1	no	no	0.942	0.612	0.469	4e-84

>sp|Q07423|HEX6_RICCO Hexose carrier protein HEX6 OS=Ricinus communis GN=HEX6 PE=2 SV=1

 Score =  446 bits (1146), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 224/372 (60%), Positives = 282/372 (75%), Gaps = 43/372 (11%)

Query: 1   SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ---- 56
           S  ASSVTRA GRK SIL+GG  FLA +A GG+A N+YMLIFGR+LLGVG+GF NQ    
Sbjct: 96  SFFASSVTRAFGRKPSILLGGXVFLAXAALGGAAVNVYMLIFGRVLLGVGVGFANQAVPL 155

Query: 57  --------------------------------------IKGGWGWRISLAMAAAPASILT 78
                                                 I+GGWGWRISLAMAA PA+ILT
Sbjct: 156 YLSEMAPPRYRGAINNGFQFSVGIGALSANLINYGTEKIEGGWGWRISLAMAAVPAAILT 215

Query: 79  IGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLIRASSTSKSITQPFKNI 138
            GA+FLPETPNS IQRS+DH++A+ MLQR+RG +DV+AEL+DLI+AS  S++I  PFKNI
Sbjct: 216 FGALFLPETPNSLIQRSNDHERAKLMLQRVRGTTDVQAELDDLIKASIISRTIQHPFKNI 275

Query: 139 IQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVL 198
           ++RKYRPQ VMA+ IPFFQQVTGIN++  Y+P+LFRT+ L ES SLL S++V G +G+  
Sbjct: 276 MRRKYRPQLVMAVAIPFFQQVTGINVIAFYAPILFRTIGLEESASLL-SSIVTGLVGSAS 334

Query: 199 AIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLC 258
             ISM++ DK GR+ LF+ GG+QM V+Q+++GSIMAA+LGDHGG  +GYAY++L+L+C+ 
Sbjct: 335 TFISMLIVDKLGRRALFIFGGVQMFVAQIMVGSIMAAELGDHGGIGKGYAYIVLILICIY 394

Query: 259 SSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAGIFF 318
            +G+ +SWGPL WLVPSEIFPLEIRSAGQSI VAV+F+FTF+ AQTFL MLCHFK+GIFF
Sbjct: 395 VAGFGWSWGPLGWLVPSEIFPLEIRSAGQSIVVAVSFLFTFVVAQTFLSMLCHFKSGIFF 454

Query: 319 FFGGLVLIMTSF 330
           FFGG V++MT+F
Sbjct: 455 FFGGWVVVMTAF 466

Active uptake of hexoses. Probable glucose/hydrogen symport.
Ricinus communis (taxid: 3988)

>sp|Q8L7R8|STP3_ARATH Sugar transport protein 3 OS=Arabidopsis thaliana GN=STP3 PE=2 SV=2

 Score =  363 bits (933), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/369 (54%), Positives = 257/369 (69%), Gaps = 43/369 (11%)

Query: 1   SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ---- 56
           +L+ASSVTR+ GRK SI +GGV+FLA +A GGSA N+ MLI  RLLLGVG+GF NQ    
Sbjct: 103 TLLASSVTRSWGRKPSIFLGGVSFLAGAALGGSAQNVAMLIIARLLLGVGVGFANQSVPL 162

Query: 57  -------------IKGGW-----------------------GWRISLAMAAAPASILTIG 80
                        I  G+                       GWRISLA AA PASILT+G
Sbjct: 163 YLSEMAPAKYRGAISNGFQLCIGIGFLSANVINYETQNIKHGWRISLATAAIPASILTLG 222

Query: 81  AIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLIRASSTSKSITQPFKNIIQ 140
           ++FLPETPNS IQ + D  K + ML+R+RG +DV+ EL DL+ ASS S + +  F  ++Q
Sbjct: 223 SLFLPETPNSIIQTTGDVHKTELMLRRVRGTNDVQDELTDLVEASSGSDTDSNAFLKLLQ 282

Query: 141 RKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAI 200
           RKYRP+ VMA++IPFFQQVTGIN+V  Y+PVL+RT+  GES SL+ S +V G +GT   +
Sbjct: 283 RKYRPELVMALVIPFFQQVTGINVVAFYAPVLYRTVGFGESGSLM-STLVTGIVGTSSTL 341

Query: 201 ISMILADKFGRKVLFLVGGMQMLVSQVIIGSI-MAAQLGDHGGCSEGYAYLILVLVCLCS 259
           +SM++ D+ GRK LFL+GG+QMLVSQV IG I M A + D G   EGY Y ++VLVC+  
Sbjct: 342 LSMLVVDRIGRKTLFLIGGLQMLVSQVTIGVIVMVADVHD-GVIKEGYGYAVVVLVCVYV 400

Query: 260 SGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAGIFFF 319
           +G+ +SWGPL WLVPSEIFPLEIRS  QS+TVAV+FVFTF  AQ+  PMLC F+AGIFFF
Sbjct: 401 AGFGWSWGPLGWLVPSEIFPLEIRSVAQSVTVAVSFVFTFAVAQSAPPMLCKFRAGIFFF 460

Query: 320 FGGLVLIMT 328
           +GG +++MT
Sbjct: 461 YGGWLVVMT 469

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q41144|STC_RICCO Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1

 Score =  326 bits (836), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 174/375 (46%), Positives = 237/375 (63%), Gaps = 47/375 (12%)

Query: 1   SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ---- 56
           SL+AS++TR  GRK+S+L GGV F A +   G+A  ++MLI GR+LLG GIGF NQ    
Sbjct: 99  SLVASTITRKFGRKLSMLFGGVLFCAGAIINGAAKAVWMLILGRILLGFGIGFANQSVPL 158

Query: 57  --------------------------------------IKGGWGWRISLAMAAAPASILT 78
                                                 IKGGWGWR+SL  A  PA I+T
Sbjct: 159 YLSEMAPYKYRGALNIGFQLSITIGILVANVLNYFFAKIKGGWGWRLSLGGAMVPALIIT 218

Query: 79  IGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLIRASSTSKSITQPFKNI 138
           +G++ LP+TPNS I+R   H++A+  L+R+RG+ DV  E  DL+ AS  SK +  P++N+
Sbjct: 219 VGSLVLPDTPNSMIERGQ-HEEARAHLKRVRGVEDVDEEFTDLVHASEDSKKVEHPWRNL 277

Query: 139 IQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVL 198
           +QRKYRP   MAI IPFFQQ+TGIN++  Y+PVLF T+  G S + L+SAV+ G +    
Sbjct: 278 LQRKYRPHLSMAIAIPFFQQLTGINVIMFYAPVLFDTIGFG-SDAALMSAVITGLVNVFA 336

Query: 199 AIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGG---CSEGYAYLILVLV 255
            ++S+   DK+GR+ LFL GG+QML+ Q I+ + + A+ G  G      + YA ++++ +
Sbjct: 337 TMVSIYGVDKWGRRFLFLEGGVQMLICQAIVAACIGAKFGVDGAPGDLPQWYAVVVVLFI 396

Query: 256 CLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAG 315
           C+  SG+ +SWGPL WLVPSEIFPLEIRSA QS+ V+VN  FTF+ AQ FL MLCH K G
Sbjct: 397 CIYVSGFAWSWGPLGWLVPSEIFPLEIRSAAQSVNVSVNMFFTFVVAQVFLIMLCHLKFG 456

Query: 316 IFFFFGGLVLIMTSF 330
           +F FF   VLIM+ F
Sbjct: 457 LFIFFSFFVLIMSIF 471

Ricinus communis (taxid: 3988)

>sp|Q9SX48|STP9_ARATH Sugar transport protein 9 OS=Arabidopsis thaliana GN=STP9 PE=1 SV=1

 Score =  326 bits (835), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 171/374 (45%), Positives = 234/374 (62%), Gaps = 46/374 (12%)

Query: 1   SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ---- 56
           S +AS+VTR  GRK+S+ +GGVAFL  S +   A N+ MLI GRLLLGVG+GF NQ    
Sbjct: 99  SFVASAVTRKYGRKISMFVGGVAFLIGSLFNAFATNVAMLIVGRLLLGVGVGFANQSTPV 158

Query: 57  ---------IKGGW----------------------------GWRISLAMAAAPASILTI 79
                    I+G                              GWR+SL +AA PA I+ I
Sbjct: 159 YLSEMAPAKIRGALNIGFQMAITIGILIANLINYGTSQMAKNGWRVSLGLAAVPAVIMVI 218

Query: 80  GAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLIRASSTSKSITQPFKNII 139
           G+  LP+TPNS ++R   +++A++MLQ+IRG  +V  E  DL  A   +K +  P+KNI 
Sbjct: 219 GSFVLPDTPNSMLERGK-YEQAREMLQKIRGADNVDEEFQDLCDACEAAKKVDNPWKNIF 277

Query: 140 QR-KYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVL 198
           Q+ KYRP  V    IPFFQQ+TGIN++  Y+PVLF+TL   +  SL+ SAV+ G +  V 
Sbjct: 278 QQAKYRPALVFCSAIPFFQQITGINVIMFYAPVLFKTLGFADDASLI-SAVITGAVNVVS 336

Query: 199 AIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGG--CSEGYAYLILVLVC 256
            ++S+   D++GR++LFL GG+QM+VSQ+++G+++  + G  G    +   A  IL  +C
Sbjct: 337 TLVSIYAVDRYGRRILFLEGGIQMIVSQIVVGTLIGMKFGTTGSGTLTPATADWILAFIC 396

Query: 257 LCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAGI 316
           L  +G+ +SWGPL WLVPSEI PLEIR AGQ+I V+VN  FTFL  Q FL MLCH K G+
Sbjct: 397 LYVAGFAWSWGPLGWLVPSEICPLEIRPAGQAINVSVNMFFTFLIGQFFLTMLCHMKFGL 456

Query: 317 FFFFGGLVLIMTSF 330
           F+FFGG+V +MT F
Sbjct: 457 FYFFGGMVAVMTVF 470

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Mostly transports glucose, and barely galactose, xylose and mannose.

Arabidopsis thaliana (taxid: 3702)

>sp|P23586|STP1_ARATH Sugar transport protein 1 OS=Arabidopsis thaliana GN=STP1 PE=1 SV=2

 Score =  325 bits (832), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 166/360 (46%), Positives = 228/360 (63%), Gaps = 47/360 (13%)

Query: 1   SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ---- 56
           SL+AS+VTR  GR++S+L GG+ F A +   G A +++MLI GR+LLG GIGF NQ    
Sbjct: 97  SLVASTVTRKFGRRLSMLFGGILFCAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPL 156

Query: 57  --------------------------------------IKGGWGWRISLAMAAAPASILT 78
                                                 IKGGWGWR+SL  A  PA I+T
Sbjct: 157 YLSEMAPYKYRGALNIGFQLSITIGILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIIT 216

Query: 79  IGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLIRASSTSKSITQPFKNI 138
           IG++ LP+TPNS I+R   H++A+  L+RIRG+ DV  E +DL+ AS  S+SI  P++N+
Sbjct: 217 IGSLVLPDTPNSMIERGQ-HEEAKTKLRRIRGVDDVSQEFDDLVAASKESQSIEHPWRNL 275

Query: 139 IQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVL 198
           ++RKYRP   MA++IPFFQQ+TGIN++  Y+PVLF T+      SL+ SAVV G +    
Sbjct: 276 LRRKYRPHLTMAVMIPFFQQLTGINVIMFYAPVLFNTIGFTTDASLM-SAVVTGSVNVAA 334

Query: 199 AIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSE---GYAYLILVLV 255
            ++S+   D++GR+ LFL GG QML+ Q ++ + + A+ G  G   E    YA +++  +
Sbjct: 335 TLVSIYGVDRWGRRFLFLEGGTQMLICQAVVAACIGAKFGVDGTPGELPKWYAIVVVTFI 394

Query: 256 CLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAG 315
           C+  +G+ +SWGPL WLVPSEIFPLEIRSA QSITV+VN +FTF+ AQ FL MLCH K G
Sbjct: 395 CIYVAGFAWSWGPLGWLVPSEIFPLEIRSAAQSITVSVNMIFTFIIAQIFLTMLCHLKFG 454

Major hexose transporter. Mediates an active uptake of hexoses, by sugar/hydrogen symport. Can transport glucose, 3-O-methylglucose, fructose, xylose, mannose, galactose, fucose, 2-deoxyglucose and arabinose. Confers sensitivity to galactose in seedlings.

Arabidopsis thaliana (taxid: 3702)

>sp|O04249|STP7_ARATH Sugar transport protein 7 OS=Arabidopsis thaliana GN=STP7 PE=2 SV=1

 Score =  321 bits (822), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 165/371 (44%), Positives = 236/371 (63%), Gaps = 43/371 (11%)

Query: 1   SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ---- 56
           +L+AS +TR  GR+ SI+ GG++FL  S     A N+ ML+ GR++LGVGIGFGNQ    
Sbjct: 100 TLVASPITRNYGRRASIVCGGISFLIGSGLNAGAVNLAMLLAGRIMLGVGIGFGNQAVPL 159

Query: 57  ---------IKGG----------------------------WGWRISLAMAAAPASILTI 79
                    ++GG                            WGWR+SL +AA PA ++T+
Sbjct: 160 YLSEVAPTHLRGGLNMMFQLATTIGIFTANMVNYGTQQLKPWGWRLSLGLAAFPALLMTL 219

Query: 80  GAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLIRASSTSKSITQPFKNII 139
           G  FLPETPNS ++R    ++ +++L ++RG  +V AEL D++ AS  + SI  PF+NI+
Sbjct: 220 GGYFLPETPNSLVERGLT-ERGRRVLVKLRGTENVNAELQDMVDASELANSIKHPFRNIL 278

Query: 140 QRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLA 199
           Q+++RPQ VMAI +P FQ +TGIN +  Y+PVLF+T+  G + SL  SA+  G +  +  
Sbjct: 279 QKRHRPQLVMAICMPMFQILTGINSILFYAPVLFQTMGFGGNASLYSSAL-TGAVLVLST 337

Query: 200 IISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCS 259
            IS+ L D+ GR+ L + GG+QM++ QVI+  I+  + GD+   S+GY+ ++++ +CL  
Sbjct: 338 FISIGLVDRLGRRALLITGGIQMIICQVIVAVILGVKFGDNQELSKGYSVIVVIFICLFV 397

Query: 260 SGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAGIFFF 319
             + +SWGPL W +PSEIFPLE RSAGQSITVAVN +FTF+ AQ FL +LC FK GIF F
Sbjct: 398 VAFGWSWGPLGWTIPSEIFPLETRSAGQSITVAVNLLFTFIIAQAFLGLLCAFKFGIFLF 457

Query: 320 FGGLVLIMTSF 330
           F G V +MT F
Sbjct: 458 FAGWVTVMTIF 468

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LT15|STP10_ARATH Sugar transport protein 10 OS=Arabidopsis thaliana GN=STP10 PE=2 SV=1

 Score =  315 bits (807), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 164/373 (43%), Positives = 230/373 (61%), Gaps = 45/373 (12%)

Query: 1   SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ---- 56
           S +AS +TR  GRKVS+ IGG+AFL  + +   A N+ MLI GRLLLGVG+GF NQ    
Sbjct: 99  SFMASVITRKHGRKVSMFIGGLAFLIGALFNAFAVNVSMLIIGRLLLGVGVGFANQSTPV 158

Query: 57  ---------IKGG----------------------------WGWRISLAMAAAPASILTI 79
                    I+G                              GWR+SL +AA PA ++ I
Sbjct: 159 YLSEMAPAKIRGALNIGFQMAITIGILVANLINYGTSKMAQHGWRVSLGLAAVPAVVMVI 218

Query: 80  GAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLIRASSTSKSITQPFKNII 139
           G+  LP+TPNS ++R  + ++A++ML++IRG  +V  E  DLI A   +K +  P+KNI+
Sbjct: 219 GSFILPDTPNSMLERGKN-EEAKQMLKKIRGADNVDHEFQDLIDAVEAAKKVENPWKNIM 277

Query: 140 QRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLA 199
           + KYRP  +    IPFFQQ+TGIN++  Y+PVLF+TL  G+  +L+ SAV+ G +  +  
Sbjct: 278 ESKYRPALIFCSAIPFFQQITGINVIMFYAPVLFKTLGFGDDAALM-SAVITGVVNMLST 336

Query: 200 IISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGG--CSEGYAYLILVLVCL 257
            +S+   D++GR++LFL GG+QM + Q+++GS + A+ G  G    +   A  IL  +C+
Sbjct: 337 FVSIYAVDRYGRRLLFLEGGIQMFICQLLVGSFIGARFGTSGTGTLTPATADWILAFICV 396

Query: 258 CSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAGIF 317
             +G+ +SWGPL WLVPSEI PLEIR AGQ+I V+VN  FTFL  Q FL MLCH K G+F
Sbjct: 397 YVAGFAWSWGPLGWLVPSEICPLEIRPAGQAINVSVNMFFTFLIGQFFLTMLCHMKFGLF 456

Query: 318 FFFGGLVLIMTSF 330
           +FF  +V IMT F
Sbjct: 457 YFFASMVAIMTVF 469

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMX3|STP11_ARATH Sugar transport protein 11 OS=Arabidopsis thaliana GN=STP11 PE=1 SV=1

 Score =  313 bits (802), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 170/374 (45%), Positives = 233/374 (62%), Gaps = 46/374 (12%)

Query: 1   SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ---- 56
           S +AS++TR  GRKVS++IG +AFL+ +   G A N+ MLI GRL LGVG+GF NQ    
Sbjct: 99  SFLASTITRLFGRKVSMVIGSLAFLSGALLNGLAINLEMLIIGRLFLGVGVGFANQSVPL 158

Query: 57  --------------------------------------IKGGWGWRISLAMAAAPASILT 78
                                                 ++ G GWR+SL +A  PA ++ 
Sbjct: 159 YLSEMAPAKIRGALNIGFQLAITIGILAANIVNYVTPKLQNGIGWRLSLGLAGVPAVMML 218

Query: 79  IGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLIRASSTSKSITQPFKNI 138
           +G  FLP+TPNS ++R +  +KA++MLQ+IRG  +V+ E N+L  A   +K +  P+ NI
Sbjct: 219 VGCFFLPDTPNSILERGNK-EKAKEMLQKIRGTMEVEHEFNELCNACEAAKKVKHPWTNI 277

Query: 139 IQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVL 198
           +Q +YRPQ      IPFFQQ+TGIN++  Y+PVLF+T+  G   SL+ SAV+ G +  + 
Sbjct: 278 MQARYRPQLTFCTFIPFFQQLTGINVIMFYAPVLFKTIGFGNDASLI-SAVITGLVNVLS 336

Query: 199 AIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLG--DHGGCSEGYAYLILVLVC 256
            I+S+   DKFGR+ LFL GG QM+V+Q+ +GS++  + G    G  S   A +IL L+C
Sbjct: 337 TIVSIYSVDKFGRRALFLQGGFQMIVTQIAVGSMIGWKFGFNGEGNLSGVDADIILALIC 396

Query: 257 LCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAGI 316
           L  +G+ +SWGPL WLVPSEI PLEIRSAGQS+ V+VN  FTF   Q FL MLCH K G+
Sbjct: 397 LYVAGFAWSWGPLGWLVPSEICPLEIRSAGQSLNVSVNMFFTFFIGQFFLTMLCHMKFGL 456

Query: 317 FFFFGGLVLIMTSF 330
           F+FF G+VLIMT F
Sbjct: 457 FYFFAGMVLIMTIF 470

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, galactose, mannose, xylose and 3-O-methylglucose, but not fructose and ribose.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39228|STP4_ARATH Sugar transport protein 4 OS=Arabidopsis thaliana GN=STP4 PE=1 SV=1

 Score =  312 bits (800), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 176/374 (47%), Positives = 232/374 (62%), Gaps = 46/374 (12%)

Query: 1   SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ---- 56
           SL AS++TR  GRK S+ +GG  F   SA+ G A NI ML+ GR+LLG G+GF NQ    
Sbjct: 96  SLFASTITRVFGRKWSMFLGGFTFFIGSAFNGFAQNIAMLLIGRILLGFGVGFANQSVPV 155

Query: 57  --------------------------------------IKGGWGWRISLAMAAAPASILT 78
                                                 +KG  GWRISL +A  PA ++ 
Sbjct: 156 YLSEMAPPNLRGAFNNGFQVAIIFGIVVATIINYFTAQMKGNIGWRISLGLACVPAVMIM 215

Query: 79  IGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLIRASSTSKSITQPFKNI 138
           IGA+ LP+TPNS I+R    ++A++MLQ IRG ++V  E  DLI AS  SK +  P+KNI
Sbjct: 216 IGALILPDTPNSLIERGYT-EEAKEMLQSIRGTNEVDEEFQDLIDASEESKQVKHPWKNI 274

Query: 139 IQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVL 198
           +  +YRPQ +M   IPFFQQ+TGIN++  Y+PVLF+TL  G   SLL SA+V G +  + 
Sbjct: 275 MLPRYRPQLIMTCFIPFFQQLTGINVITFYAPVLFQTLGFGSKASLL-SAMVTGIIELLC 333

Query: 199 AIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLG--DHGGCSEGYAYLILVLVC 256
             +S+   D+FGR++LFL GG+QMLVSQ+ IG+++  + G    G   +  A LI+ L+C
Sbjct: 334 TFVSVFTVDRFGRRILFLQGGIQMLVSQIAIGAMIGVKFGVAGTGNIGKSDANLIVALIC 393

Query: 257 LCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAGI 316
           +  +G+ +SWGPL WLVPSEI PLEIRSA Q+I V+VN  FTFL AQ FL MLCH K G+
Sbjct: 394 IYVAGFAWSWGPLGWLVPSEISPLEIRSAAQAINVSVNMFFTFLVAQLFLTMLCHMKFGL 453

Query: 317 FFFFGGLVLIMTSF 330
           FFFF   V+IMT F
Sbjct: 454 FFFFAFFVVIMTIF 467

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, methylglucose, galactose, xylose and mannose, but not fructose.

Arabidopsis thaliana (taxid: 3702)

>sp|O65413|STP12_ARATH Sugar transport protein 12 OS=Arabidopsis thaliana GN=STP12 PE=2 SV=1

 Score =  311 bits (797), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 167/356 (46%), Positives = 224/356 (62%), Gaps = 45/356 (12%)

Query: 1   SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQI--- 57
           SL+AS VTR  GRK+S+L+GGV F A +   G A  ++MLI GRLLLG GIGF NQ    
Sbjct: 97  SLVASYVTRQFGRKISMLLGGVLFCAGALLNGFATAVWMLIVGRLLLGFGIGFTNQSVPL 156

Query: 58  -------------------------------------KGGWGWRISLAMAAAPASILTIG 80
                                                K  WGWR+SL  A  PA I+T+G
Sbjct: 157 YLSEMAPYKYRGALNIGFQLSITIGILVANVLNFFFSKISWGWRLSLGGAVVPALIITVG 216

Query: 81  AIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLIRASSTSKSITQPFKNIIQ 140
           ++ LP+TPNS I+R    + A+  L++IRG+ D+  E+NDLI AS  SK +  P++N++Q
Sbjct: 217 SLILPDTPNSMIERGQ-FRLAEAKLRKIRGVDDIDDEINDLIIASEASKLVEHPWRNLLQ 275

Query: 141 RKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAI 200
           RKYRP   MAILIP FQQ+TGIN++  Y+PVLF+T+  G S + L+SAVV G +     +
Sbjct: 276 RKYRPHLTMAILIPAFQQLTGINVIMFYAPVLFQTIGFG-SDAALISAVVTGLVNVGATV 334

Query: 201 ISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGG---CSEGYAYLILVLVCL 257
           +S+   DK+GR+ LFL GG QML+SQV + + + A+ G  G      + YA ++++ +C+
Sbjct: 335 VSIYGVDKWGRRFLFLEGGFQMLISQVAVAAAIGAKFGVDGTPGVLPKWYAIVVVLFICI 394

Query: 258 CSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK 313
             + + +SWGPL WLVPSEIFPLEIRSA QSITV+VN +FTFL AQ FL MLCH K
Sbjct: 395 YVAAFAWSWGPLGWLVPSEIFPLEIRSAAQSITVSVNMIFTFLIAQVFLMMLCHLK 450

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	330
225466031	508	PREDICTED: hexose carrier protein HEX6 [	0.996	0.647	0.607	1e-125
47078687	508	putative hexose transporter [Vitis vinif	0.996	0.647	0.607	1e-125
147816021	508	hypothetical protein VITISV_025873 [Viti	0.996	0.647	0.607	1e-125
224129904	516	predicted protein [Populus trichocarpa]	1.0	0.639	0.591	1e-124
357455795	509	Hexose carrier [Medicago truncatula] gi|	0.996	0.646	0.623	1e-123
1708191	510	RecName: Full=Hexose carrier protein HEX	0.996	0.645	0.602	1e-122
255539853	510	sugar transporter, putative [Ricinus com	0.996	0.645	0.602	1e-122
356515367	510	PREDICTED: hexose carrier protein HEX6-l	0.996	0.645	0.592	1e-120
357455797	510	Hexose carrier protein HEX6 [Medicago tr	0.996	0.645	0.608	1e-119
356517750	501	PREDICTED: hexose carrier protein HEX6-l	1.0	0.658	0.615	1e-116

>gi|225466031|ref|XP_002267655.1| PREDICTED: hexose carrier protein HEX6 [Vitis vinifera] gi|310877794|gb|ADP37128.1| hexose transporter [Vitis vinifera]

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 226/372 (60%), Positives = 280/372 (75%), Gaps = 43/372 (11%)

Query: 1   SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ---- 56
           S +AS +T+  GRK +IL GG AFL  SA GG+AFN+YM+I GR+LLGVG+GF NQ    
Sbjct: 96  SFVASWITKKFGRKPTILAGGAAFLIGSALGGAAFNVYMVILGRILLGVGVGFANQAVPL 155

Query: 57  --------------------------------------IKGGWGWRISLAMAAAPASILT 78
                                                 IKGGWGWR+SLA+AA PASILT
Sbjct: 156 YLSEMAPPRYRGAINNGFQFSIGVGALSANLINFGTEKIKGGWGWRVSLALAAVPASILT 215

Query: 79  IGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLIRASSTSKSITQPFKNI 138
           +GA+FLPETPNS IQRS D+ KA+ MLQR+RG +DV+AEL+DL++ASS +K+I  PFK I
Sbjct: 216 LGALFLPETPNSLIQRSKDYGKAELMLQRVRGTNDVQAELDDLVKASSLAKTINDPFKKI 275

Query: 139 IQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVL 198
           +QRKYRPQ VMAI IPFFQQVTGIN++  Y+PVLFR + LG S SLL SAVV G +G   
Sbjct: 276 LQRKYRPQLVMAIAIPFFQQVTGINVIAFYAPVLFRAIGLGVSASLL-SAVVTGVVGMAS 334

Query: 199 AIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLC 258
             ISM++ DK GR+VLFLVGG+QMLVSQ+++G I+AA+LGDHGG S+ YA+L+L+L+C+ 
Sbjct: 335 TFISMLIVDKLGRRVLFLVGGIQMLVSQIMVGGILAAELGDHGGVSKVYAFLVLLLICVY 394

Query: 259 SSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAGIFF 318
            +G+ +SWGPL WLVPSEIFPLEIRSAGQSITVAV+F+FTF+ AQTFL MLCHFK+GIFF
Sbjct: 395 VAGFGWSWGPLGWLVPSEIFPLEIRSAGQSITVAVSFIFTFIVAQTFLSMLCHFKSGIFF 454

Query: 319 FFGGLVLIMTSF 330
           FFGG V++MT+F
Sbjct: 455 FFGGWVVLMTAF 466

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|47078687|gb|AAT09978.1| putative hexose transporter [Vitis vinifera]

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 226/372 (60%), Positives = 280/372 (75%), Gaps = 43/372 (11%)

Query: 1   SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ---- 56
           S +AS +T+  GRK +IL GG AFL  SA GG+AFN+YM+I GR+LLGVG+GF NQ    
Sbjct: 96  SFVASWITKKFGRKPTILAGGAAFLIGSALGGAAFNVYMVILGRILLGVGVGFANQAVPL 155

Query: 57  --------------------------------------IKGGWGWRISLAMAAAPASILT 78
                                                 IKGGWGWR+SLA+AA PASILT
Sbjct: 156 YLSEMAPPRYRGAINNGFQFSIGVGALSANLINFGTEKIKGGWGWRVSLALAAVPASILT 215

Query: 79  IGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLIRASSTSKSITQPFKNI 138
           +GA+FLPETPNS IQRS D+ KA+ MLQR+RG +DV+AEL+DL++ASS +K+I  PFK I
Sbjct: 216 LGALFLPETPNSLIQRSKDYGKAELMLQRVRGTNDVQAELDDLVKASSLAKTINDPFKKI 275

Query: 139 IQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVL 198
           +QRKYRPQ VMAI IPFFQQVTGIN++  Y+PVLFR + LG S SLL SAVV G +G   
Sbjct: 276 LQRKYRPQLVMAIAIPFFQQVTGINVIAFYAPVLFRAIGLGVSASLL-SAVVTGVVGMAS 334

Query: 199 AIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLC 258
             ISM++ DK GR+VLFLVGG+QMLVSQ+++G I+AA+LGDHGG S+ YA+L+L+L+C+ 
Sbjct: 335 TFISMLIVDKLGRRVLFLVGGIQMLVSQIMVGGILAAELGDHGGVSKVYAFLVLLLICVY 394

Query: 259 SSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAGIFF 318
            +G+ +SWGPL WLVPSEIFPLEIRSAGQSITVAV+F+FTF+ AQTFL MLCHFK+GIFF
Sbjct: 395 VAGFGWSWGPLGWLVPSEIFPLEIRSAGQSITVAVSFIFTFIVAQTFLSMLCHFKSGIFF 454

Query: 319 FFGGLVLIMTSF 330
           FFGG V++MT+F
Sbjct: 455 FFGGWVVLMTAF 466

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147816021|emb|CAN72462.1| hypothetical protein VITISV_025873 [Vitis vinifera]

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 226/372 (60%), Positives = 280/372 (75%), Gaps = 43/372 (11%)

Query: 1   SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ---- 56
           S +AS +T+  GRK +IL GG AFL  SA GG+AFN+YM+I GR+LLGVG+GF NQ    
Sbjct: 96  SFVASWITKKFGRKPTILAGGAAFLIGSALGGAAFNVYMVILGRILLGVGVGFANQAVPL 155

Query: 57  --------------------------------------IKGGWGWRISLAMAAAPASILT 78
                                                 IKGGWGWR+SLA+AA PASILT
Sbjct: 156 YLSEMAPPRYRGAINNGFQFSIGVGALSANLINFGTEKIKGGWGWRVSLALAAVPASILT 215

Query: 79  IGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLIRASSTSKSITQPFKNI 138
           +GA+FLPETPNS IQRS D+ KA+ MLQR+RG +DV+AEL+DL++ASS +K+I  PFK I
Sbjct: 216 LGALFLPETPNSLIQRSKDYGKAELMLQRVRGTNDVQAELDDLVKASSLAKTINDPFKKI 275

Query: 139 IQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVL 198
           +QRKYRPQ VMAI IPFFQQVTGIN++  Y+PVLFR + LG S SLL SAVV G +G   
Sbjct: 276 LQRKYRPQLVMAIAIPFFQQVTGINVIAFYAPVLFRAIGLGVSASLL-SAVVTGVVGMAS 334

Query: 199 AIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLC 258
             ISM++ DK GR+VLFLVGG+QMLVSQ+++G I+AA+LGDHGG S+ YA+L+L+L+C+ 
Sbjct: 335 TFISMLIVDKLGRRVLFLVGGIQMLVSQIMVGGILAAELGDHGGVSKVYAFLVLLLICVY 394

Query: 259 SSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAGIFF 318
            +G+ +SWGPL WLVPSEIFPLEIRSAGQSITVAV+F+FTF+ AQTFL MLCHFK+GIFF
Sbjct: 395 VAGFGWSWGPLGWLVPSEIFPLEIRSAGQSITVAVSFIFTFIVAQTFLSMLCHFKSGIFF 454

Query: 319 FFGGLVLIMTSF 330
           FFGG V++MT+F
Sbjct: 455 FFGGWVVLMTAF 466

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129904|ref|XP_002328832.1| predicted protein [Populus trichocarpa] gi|222839130|gb|EEE77481.1| predicted protein [Populus trichocarpa]

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 224/379 (59%), Positives = 271/379 (71%), Gaps = 49/379 (12%)

Query: 1   SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ---- 56
           S  ASS+TR  GRK SIL GG AFL+ SA  G+A N+YMLIFGR+LLGVG+GF NQ    
Sbjct: 96  SFFASSITRYFGRKPSILAGGAAFLSGSALNGAATNLYMLIFGRVLLGVGVGFANQAGAE 155

Query: 57  ---------------------------------------------IKGGWGWRISLAMAA 71
                                                        I+GGWGWRISLAM A
Sbjct: 156 PRRAVPLYLSEMAPPRYRGAINNGFQLCIAIGVLSANFINFGTEKIEGGWGWRISLAMGA 215

Query: 72  APASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLIRASSTSKSI 131
            PA+ LTIG++FLPETPNS IQR +D QKA+ MLQRIRG +DV+AE NDLI+AS  SKSI
Sbjct: 216 IPATFLTIGSLFLPETPNSLIQRFNDEQKAKTMLQRIRGTTDVEAEFNDLIKASLVSKSI 275

Query: 132 TQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVA 191
             P K IIQ+KYRPQ VMAI IPFFQQVTGIN++  Y+P+LFRT+ L ES SL++SA++A
Sbjct: 276 EHPIKKIIQKKYRPQLVMAIAIPFFQQVTGINVISFYAPILFRTIGLSESVSLIMSALIA 335

Query: 192 GGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLI 251
           G +GT    +SM++ DK GR+V+ + GG+QM VSQ++IGSIMAAQLGDHG  ++GYAY +
Sbjct: 336 GVVGTASTFLSMLVVDKLGRRVMLICGGVQMFVSQIMIGSIMAAQLGDHGSINKGYAYFV 395

Query: 252 LVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCH 311
           L ++ +  SG+ +SWGPL WLVPSEIFPLEIRS GQSI VAVNFVFTF+ AQTFL MLCH
Sbjct: 396 LTMISIYVSGFAWSWGPLGWLVPSEIFPLEIRSVGQSIVVAVNFVFTFIVAQTFLAMLCH 455

Query: 312 FKAGIFFFFGGLVLIMTSF 330
           FK+GIFFFFGG V +MT+F
Sbjct: 456 FKSGIFFFFGGWVAVMTAF 474

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455795|ref|XP_003598178.1| Hexose carrier [Medicago truncatula] gi|355487226|gb|AES68429.1| Hexose carrier [Medicago truncatula]

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 232/372 (62%), Positives = 266/372 (71%), Gaps = 43/372 (11%)

Query: 1   SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ---- 56
           S  ASS+TRA GRK SIL+GG AFL  +A GG+A NIYMLI GR+LLGVGIGF NQ    
Sbjct: 97  SFFASSITRAFGRKPSILVGGAAFLIGAALGGAALNIYMLILGRVLLGVGIGFANQAVPL 156

Query: 57  --------------------------------------IKGGWGWRISLAMAAAPASILT 78
                                                 IK GWGWRISLAMAA PA+ILT
Sbjct: 157 YLSEMALPRYRGAINIGFQLCVGIGVLSANLINFGTEKIKDGWGWRISLAMAAVPATILT 216

Query: 79  IGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLIRASSTSKSITQPFKNI 138
           +GA FLPETPNS IQ S +HQKA+ MLQ IRG  DV+ E  DLI AS  S SI  PFKNI
Sbjct: 217 LGAFFLPETPNSIIQNSKNHQKAKLMLQSIRGTHDVQQEFEDLIEASIMSNSIKHPFKNI 276

Query: 139 IQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVL 198
           +QRKYRPQ VMAI IPFFQQ TGIN++  Y+P+LF T+ LGES SLL SAV+ G +GT  
Sbjct: 277 LQRKYRPQLVMAIAIPFFQQFTGINVISFYAPILFLTIGLGESASLL-SAVMVGIVGTTS 335

Query: 199 AIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLC 258
             ISM++ DK GR+VLF+ GG+QM  SQ++IGSIMAAQLGDHG  S+ YAYLILVL+C+ 
Sbjct: 336 TFISMLIVDKLGRRVLFISGGIQMFFSQILIGSIMAAQLGDHGEISKKYAYLILVLICIY 395

Query: 259 SSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAGIFF 318
            +G+ +SWGPL WLVPSEIFPLEIRSA QSITVAVNF+FTF+ AQTFL MLCHFK G FF
Sbjct: 396 VAGFAWSWGPLGWLVPSEIFPLEIRSAAQSITVAVNFLFTFIVAQTFLSMLCHFKYGTFF 455

Query: 319 FFGGLVLIMTSF 330
           FFGG V+IMT F
Sbjct: 456 FFGGWVVIMTVF 467

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1708191|sp|Q07423.1|HEX6_RICCO RecName: Full=Hexose carrier protein HEX6 gi|467319|gb|AAA79857.1| hexose carrier protein [Ricinus communis]

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 224/372 (60%), Positives = 282/372 (75%), Gaps = 43/372 (11%)

Query: 1   SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ---- 56
           S  ASSVTRA GRK SIL+GG  FLA +A GG+A N+YMLIFGR+LLGVG+GF NQ    
Sbjct: 96  SFFASSVTRAFGRKPSILLGGXVFLAXAALGGAAVNVYMLIFGRVLLGVGVGFANQAVPL 155

Query: 57  --------------------------------------IKGGWGWRISLAMAAAPASILT 78
                                                 I+GGWGWRISLAMAA PA+ILT
Sbjct: 156 YLSEMAPPRYRGAINNGFQFSVGIGALSANLINYGTEKIEGGWGWRISLAMAAVPAAILT 215

Query: 79  IGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLIRASSTSKSITQPFKNI 138
            GA+FLPETPNS IQRS+DH++A+ MLQR+RG +DV+AEL+DLI+AS  S++I  PFKNI
Sbjct: 216 FGALFLPETPNSLIQRSNDHERAKLMLQRVRGTTDVQAELDDLIKASIISRTIQHPFKNI 275

Query: 139 IQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVL 198
           ++RKYRPQ VMA+ IPFFQQVTGIN++  Y+P+LFRT+ L ES SLL S++V G +G+  
Sbjct: 276 MRRKYRPQLVMAVAIPFFQQVTGINVIAFYAPILFRTIGLEESASLL-SSIVTGLVGSAS 334

Query: 199 AIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLC 258
             ISM++ DK GR+ LF+ GG+QM V+Q+++GSIMAA+LGDHGG  +GYAY++L+L+C+ 
Sbjct: 335 TFISMLIVDKLGRRALFIFGGVQMFVAQIMVGSIMAAELGDHGGIGKGYAYIVLILICIY 394

Query: 259 SSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAGIFF 318
            +G+ +SWGPL WLVPSEIFPLEIRSAGQSI VAV+F+FTF+ AQTFL MLCHFK+GIFF
Sbjct: 395 VAGFGWSWGPLGWLVPSEIFPLEIRSAGQSIVVAVSFLFTFVVAQTFLSMLCHFKSGIFF 454

Query: 319 FFGGLVLIMTSF 330
           FFGG V++MT+F
Sbjct: 455 FFGGWVVVMTAF 466

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539853|ref|XP_002510991.1| sugar transporter, putative [Ricinus communis] gi|223550106|gb|EEF51593.1| sugar transporter, putative [Ricinus communis]

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 224/372 (60%), Positives = 282/372 (75%), Gaps = 43/372 (11%)

Query: 1   SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ---- 56
           S  ASSVTRA GRK SIL+GG  FLA +A GG+A N+YMLIFGR+LLGVG+GF NQ    
Sbjct: 96  SFFASSVTRAFGRKPSILLGGAVFLAGAALGGAAVNVYMLIFGRVLLGVGVGFANQAVPL 155

Query: 57  --------------------------------------IKGGWGWRISLAMAAAPASILT 78
                                                 I+GGWGWRISLAMAA PA+ILT
Sbjct: 156 YLSEMAPPRYRGAINNGFQFSVGIGALSANLINYGTEKIEGGWGWRISLAMAAVPAAILT 215

Query: 79  IGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLIRASSTSKSITQPFKNI 138
            GA+FLPETPNS IQRS+DH++A+ MLQR+RG +DV+AEL+DLI+AS  S++I  PFKNI
Sbjct: 216 FGALFLPETPNSLIQRSNDHERAKLMLQRVRGTTDVQAELDDLIKASIISRTIQHPFKNI 275

Query: 139 IQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVL 198
           ++RKYRPQ VMA+ IPFFQQVTGIN++  Y+P+LFRT+ L ES SLL S++V G +G+  
Sbjct: 276 MRRKYRPQLVMAVAIPFFQQVTGINVIAFYAPILFRTIGLEESASLL-SSIVTGLVGSAS 334

Query: 199 AIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLC 258
             ISM++ DK GR+ LF+ GG+QM V+Q+++GSIMAA+LGDHGG  +GYAY++L+L+C+ 
Sbjct: 335 TFISMLIVDKLGRRALFIFGGVQMFVAQIMVGSIMAAELGDHGGIGKGYAYIVLILICIY 394

Query: 259 SSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAGIFF 318
            +G+ +SWGPL WLVPSEIFPLEIRSAGQSI VAV+F+FTF+ AQTFL MLCHFK+GIFF
Sbjct: 395 VAGFGWSWGPLGWLVPSEIFPLEIRSAGQSIVVAVSFLFTFVVAQTFLSMLCHFKSGIFF 454

Query: 319 FFGGLVLIMTSF 330
           FFGG V++MT+F
Sbjct: 455 FFGGWVVVMTAF 466

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515367|ref|XP_003526372.1| PREDICTED: hexose carrier protein HEX6-like [Glycine max]

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 221/373 (59%), Positives = 275/373 (73%), Gaps = 44/373 (11%)

Query: 1   SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ---- 56
           S  AS +T+A GRK SI++GG AFLA +  GG+AFN+YMLI GRLLLGVG+GF NQ    
Sbjct: 97  SFFASYITKAFGRKPSIVVGGAAFLAGTGLGGAAFNVYMLIVGRLLLGVGVGFANQAVPL 156

Query: 57  --------------------------------------IKGGWGWRISLAMAAAPASILT 78
                                                 I+GGWGWR+SLAMAA PAS+LT
Sbjct: 157 YLSEMALPRLRGAINNGFQLSIGIGALSANLINYGTEKIEGGWGWRMSLAMAAVPASVLT 216

Query: 79  IGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLIRASSTSKSIT-QPFKN 137
           +GA+FLPETPNS IQRS D QKA+ MLQRIRG+ DV+AEL+DLI+ASS SK+   Q  K 
Sbjct: 217 LGALFLPETPNSVIQRSHDKQKAKLMLQRIRGMEDVQAELDDLIKASSPSKTNNKQSLKL 276

Query: 138 IIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTV 197
           I++ +YRPQ VMA+ IPFFQQVTGIN++  Y+P+LFRT+ LGES S LLSAV+ G +GT 
Sbjct: 277 ILKGRYRPQLVMALAIPFFQQVTGINVIAFYAPLLFRTIGLGESAS-LLSAVMTGVVGTG 335

Query: 198 LAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCL 257
              ISM + DK GR+ LF++GG+QM VSQ I+G IMA  L DHGG S+GYA+++LV++C+
Sbjct: 336 STFISMFVVDKLGRRTLFMIGGIQMFVSQCIVGGIMALHLKDHGGLSKGYAFVVLVMICI 395

Query: 258 CSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAGIF 317
             +G+ +SWGPL WLVPSEIFPLEIRSAGQSITVAV+F+FTF+ AQTFL MLCHF++GIF
Sbjct: 396 YVAGFGWSWGPLGWLVPSEIFPLEIRSAGQSITVAVSFIFTFIVAQTFLSMLCHFRSGIF 455

Query: 318 FFFGGLVLIMTSF 330
           FFFGG V++MT+F
Sbjct: 456 FFFGGWVVVMTTF 468

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455797|ref|XP_003598179.1| Hexose carrier protein HEX6 [Medicago truncatula] gi|355487227|gb|AES68430.1| Hexose carrier protein HEX6 [Medicago truncatula]

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 227/373 (60%), Positives = 277/373 (74%), Gaps = 44/373 (11%)

Query: 1   SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ---- 56
           S  AS VTR  GRK SI+ GG AFLA +A GG+AFN+YMLI GRLLLGVG+GF NQ    
Sbjct: 97  SFFASYVTRVFGRKPSIVAGGAAFLAGTALGGAAFNVYMLIVGRLLLGVGVGFANQAVPL 156

Query: 57  --------------------------------------IKGGWGWRISLAMAAAPASILT 78
                                                 I+GGWGWR+SLAMAA PAS LT
Sbjct: 157 YLSEMALPRFRGAINNGFQLSIGIGALSANLINYGTEKIEGGWGWRVSLAMAAVPASFLT 216

Query: 79  IGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLIRASSTSKSIT-QPFKN 137
           +GA+FLPETPNS IQ + DHQKA+++LQRIRGI DV+AEL+DL +ASSTSK+ + QPFK 
Sbjct: 217 LGALFLPETPNSLIQTTQDHQKAKRILQRIRGIEDVEAELDDLTKASSTSKTSSQQPFKI 276

Query: 138 IIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTV 197
           I++R+YRPQ VMAI IPFFQQVTGIN++  Y+P+LFRT+ LGES S LLS+V+ G +GT 
Sbjct: 277 IMKRRYRPQLVMAIAIPFFQQVTGINVIAFYAPLLFRTIGLGESAS-LLSSVMTGIVGTG 335

Query: 198 LAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCL 257
              ISM + DK GR+ LF+VGG+QM VSQ I+G IMA  L DHGG S+GYAY++L+++C+
Sbjct: 336 STFISMFIVDKLGRRTLFIVGGIQMFVSQCIVGGIMAVHLKDHGGLSKGYAYMVLIMICI 395

Query: 258 CSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAGIF 317
             +G+ +SWGPL WLVPSEIFPLEIRSAGQSITVAV+F+FTF+ AQTFL MLCHFK+GIF
Sbjct: 396 YVAGFGWSWGPLGWLVPSEIFPLEIRSAGQSITVAVSFLFTFIVAQTFLSMLCHFKSGIF 455

Query: 318 FFFGGLVLIMTSF 330
           FFFGG V++MT F
Sbjct: 456 FFFGGWVVVMTVF 468

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517750|ref|XP_003527549.1| PREDICTED: hexose carrier protein HEX6-like [Glycine max]

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 229/372 (61%), Positives = 263/372 (70%), Gaps = 42/372 (11%)

Query: 1   SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ---- 56
           S  ASSVTRA GRK SILIGG AFL  +A GG+A NIYMLI GR++LGVGIGF NQ    
Sbjct: 96  SFFASSVTRAFGRKPSILIGGAAFLIGAALGGAALNIYMLILGRVMLGVGIGFANQSAPL 155

Query: 57  --------------------------------------IKGGWGWRISLAMAAAPASILT 78
                                                 IK GWGWRISL MAA PAS+LT
Sbjct: 156 YLSEMAPPRYRGAINTGFQLCVGIGVLSANLVNFGTEKIKAGWGWRISLVMAAVPASMLT 215

Query: 79  IGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLIRASSTSKSITQPFKNI 138
            G++FLPETPNS IQ   +HQKA+ MLQRIRG  DV+ EL DLI AS  S SI  PFKNI
Sbjct: 216 FGSLFLPETPNSIIQHDKNHQKAKLMLQRIRGTDDVQQELEDLIEASEMSNSIKHPFKNI 275

Query: 139 IQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVL 198
           + RKYRPQ VMAI IPFFQQ TGIN++  Y+P+LF T+ LGES SLLLSAVV G +GT  
Sbjct: 276 LHRKYRPQLVMAIAIPFFQQFTGINVISFYAPILFLTIGLGESASLLLSAVVTGFVGTAS 335

Query: 199 AIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLC 258
             ISM++ D+ GR+VLF+ GG+QM  SQV+IGSIMA QLGDHG   + YAYLILVL+C+ 
Sbjct: 336 TFISMLMVDRLGRRVLFISGGIQMFFSQVLIGSIMATQLGDHGEIDKKYAYLILVLICIY 395

Query: 259 SSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAGIFF 318
            +G+ +SWGPL WLVPSEIF LEIRSA QSITVAVNF FTF+ AQTFL MLCHFK G FF
Sbjct: 396 VAGFAWSWGPLGWLVPSEIFQLEIRSAAQSITVAVNFFFTFIVAQTFLIMLCHFKFGTFF 455

Query: 319 FFGGLVLIMTSF 330
           FFGG V++MT+F
Sbjct: 456 FFGGWVVVMTAF 467

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	330
TAIR|locus:2151596	514	AT5G61520 [Arabidopsis thalian	0.909	0.583	0.540	6.9e-96
TAIR|locus:2202044	522	STP1 "AT1G11260" [Arabidopsis	0.918	0.580	0.471	3.1e-87
TAIR|locus:2092286	514	STP4 "sugar transporter 4" [Ar	0.875	0.562	0.494	6.4e-85
TAIR|locus:2166781	514	STP11 "sugar transporter 11" [	0.827	0.531	0.483	4e-83
TAIR|locus:2011957	517	STP9 "sugar transporter 9" [Ar	0.893	0.570	0.453	2.2e-82
TAIR|locus:2132213	513	STP7 "sugar transporter protei	0.842	0.541	0.460	1.2e-81
TAIR|locus:2092221	514	AT3G19940 [Arabidopsis thalian	0.893	0.573	0.445	2.8e-80
TAIR|locus:2151074	526	MSS1 "AT5G26340" [Arabidopsis	0.839	0.526	0.480	1.2e-79
TAIR|locus:2009323	506	AT1G34580 [Arabidopsis thalian	0.878	0.573	0.416	1.6e-71
TAIR|locus:2195995	504	STP14 "sugar transport protein	0.812	0.531	0.431	1.6e-71

TAIR|locus:2151596 AT5G61520 [Arabidopsis thaliana (taxid:3702)]

 Score = 788 (282.4 bits), Expect = 6.9e-96, Sum P(2) = 6.9e-96
 Identities = 166/307 (54%), Positives = 216/307 (70%)

Query:    25 LADSAYGGSAFNIYMLIFGRLLLGVG-IGFGNQ-IKGGWGWRISLAMAAAPASILTIGAI 82
             +A + Y G+  N + L  G   L    I +  Q IK GW  RISLA AA PASILT+G++
Sbjct:   167 MAPAKYRGAISNGFQLCIGIGFLSANVINYETQNIKHGW--RISLATAAIPASILTLGSL 224

Query:    83 FLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLIRASSTSKSITQPFKNIIQRK 142
             FLPETPNS IQ + D  K + ML+R+RG +DV+ EL DL+ ASS S + +  F  ++QRK
Sbjct:   225 FLPETPNSIIQTTGDVHKTELMLRRVRGTNDVQDELTDLVEASSGSDTDSNAFLKLLQRK 284

Query:   143 YRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIIS 202
             YRP+ VMA++IPFFQQVTGIN+V  Y+PVL+RT+  GES SL+ S +V G +GT   ++S
Sbjct:   285 YRPELVMALVIPFFQQVTGINVVAFYAPVLYRTVGFGESGSLM-STLVTGIVGTSSTLLS 343

Query:   203 MILADKFGRKVLFLVGGMQMLVSQVIIGSI-MAAQLGDHGGCSEGYAYLILVLVCLCSSG 261
             M++ D+ GRK LFL+GG+QMLVSQV IG I M A + D G   EGY Y ++VLVC+  +G
Sbjct:   344 MLVVDRIGRKTLFLIGGLQMLVSQVTIGVIVMVADVHD-GVIKEGYGYAVVVLVCVYVAG 402

Query:   262 YCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAXXXXXXX 321
             + +SWGPL WLVPSEIFPLEIRS  QS+TVAV+FVFTF  AQ+  PMLC F+A       
Sbjct:   403 FGWSWGPLGWLVPSEIFPLEIRSVAQSVTVAVSFVFTFAVAQSAPPMLCKFRAGIFFFYG 462

Query:   322 XLVLIMT 328
               +++MT
Sbjct:   463 GWLVVMT 469

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2202044 STP1 "AT1G11260" [Arabidopsis thaliana (taxid:3702)]

 Score = 732 (262.7 bits), Expect = 3.1e-87, Sum P(2) = 3.1e-87
 Identities = 147/312 (47%), Positives = 205/312 (65%)

Query:    25 LADSAYGGSAFNI---YMLIFGRLLLGVGIGFGNQIKGGWGWRISLAMAAAPASILTIGA 81
             +A   Y G A NI     +  G L+  V   F  +IKGGWGWR+SL  A  PA I+TIG+
Sbjct:   161 MAPYKYRG-ALNIGFQLSITIGILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGS 219

Query:    82 IFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLIRASSTSKSITQPFKNIIQR 141
             + LP+TPNS I+R   H++A+  L+RIRG+ DV  E +DL+ AS  S+SI  P++N+++R
Sbjct:   220 LVLPDTPNSMIERGQ-HEEAKTKLRRIRGVDDVSQEFDDLVAASKESQSIEHPWRNLLRR 278

Query:   142 KYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAII 201
             KYRP   MA++IPFFQQ+TGIN++  Y+PVLF T+      SL+ SAVV G +     ++
Sbjct:   279 KYRPHLTMAVMIPFFQQLTGINVIMFYAPVLFNTIGFTTDASLM-SAVVTGSVNVAATLV 337

Query:   202 SMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSE---GYAYLILVLVCLC 258
             S+   D++GR+ LFL GG QML+ Q ++ + + A+ G  G   E    YA +++  +C+ 
Sbjct:   338 SIYGVDRWGRRFLFLEGGTQMLICQAVVAACIGAKFGVDGTPGELPKWYAIVVVTFICIY 397

Query:   259 SSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAXXXX 318
              +G+ +SWGPL WLVPSEIFPLEIRSA QSITV+VN +FTF+ AQ FL MLCH K     
Sbjct:   398 VAGFAWSWGPLGWLVPSEIFPLEIRSAAQSITVSVNMIFTFIIAQIFLTMLCHLKFGLFL 457

Query:   319 XXXXLVLIMTSF 330
                  V++M+ F
Sbjct:   458 VFAFFVVVMSIF 469

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0015145 "monosaccharide transmembrane transporter activity" evidence=IMP

GO:0015749 "monosaccharide transport" evidence=IMP

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2092286 STP4 "sugar transporter 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 711 (255.3 bits), Expect = 6.4e-85, Sum P(2) = 6.4e-85
 Identities = 145/293 (49%), Positives = 196/293 (66%)

Query:    40 LIFGRLLLGVGIGFGNQIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQ 99
             +IFG ++  +   F  Q+KG  GWRISL +A  PA ++ IGA+ LP+TPNS I+R    +
Sbjct:   177 IIFGIVVATIINYFTAQMKGNIGWRISLGLACVPAVMIMIGALILPDTPNSLIERGYT-E 235

Query:   100 KAQKMLQRIRGISDVKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQV 159
             +A++MLQ IRG ++V  E  DLI AS  SK +  P+KNI+  +YRPQ +M   IPFFQQ+
Sbjct:   236 EAKEMLQSIRGTNEVDEEFQDLIDASEESKQVKHPWKNIMLPRYRPQLIMTCFIPFFQQL 295

Query:   160 TGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGG 219
             TGIN++  Y+PVLF+TL  G   SLL SA+V G +  +   +S+   D+FGR++LFL GG
Sbjct:   296 TGINVITFYAPVLFQTLGFGSKASLL-SAMVTGIIELLCTFVSVFTVDRFGRRILFLQGG 354

Query:   220 MQMLVSQVIIGSIMAAQLG--DHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEI 277
             +QMLVSQ+ IG+++  + G    G   +  A LI+ L+C+  +G+ +SWGPL WLVPSEI
Sbjct:   355 IQMLVSQIAIGAMIGVKFGVAGTGNIGKSDANLIVALICIYVAGFAWSWGPLGWLVPSEI 414

Query:   278 FPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAXXXXXXXXLVLIMTSF 330
              PLEIRSA Q+I V+VN  FTFL AQ FL MLCH K          V+IMT F
Sbjct:   415 SPLEIRSAAQAINVSVNMFFTFLVAQLFLTMLCHMKFGLFFFFAFFVVIMTIF 467

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0008506 "sucrose:hydrogen symporter activity" evidence=IDA

GO:0015145 "monosaccharide transmembrane transporter activity" evidence=IDA

GO:0015770 "sucrose transport" evidence=TAS

TAIR|locus:2166781 STP11 "sugar transporter 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 687 (246.9 bits), Expect = 4.0e-83, Sum P(2) = 4.0e-83
 Identities = 134/277 (48%), Positives = 187/277 (67%)

Query:    56 QIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVK 115
             +++ G GWR+SL +A  PA ++ +G  FLP+TPNS ++R +  +KA++MLQ+IRG  +V+
Sbjct:   196 KLQNGIGWRLSLGLAGVPAVMMLVGCFFLPDTPNSILERGNK-EKAKEMLQKIRGTMEVE 254

Query:   116 AELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRT 175
              E N+L  A   +K +  P+ NI+Q +YRPQ      IPFFQQ+TGIN++  Y+PVLF+T
Sbjct:   255 HEFNELCNACEAAKKVKHPWTNIMQARYRPQLTFCTFIPFFQQLTGINVIMFYAPVLFKT 314

Query:   176 LKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAA 235
             +  G   SL+ SAV+ G +  +  I+S+   DKFGR+ LFL GG QM+V+Q+ +GS++  
Sbjct:   315 IGFGNDASLI-SAVITGLVNVLSTIVSIYSVDKFGRRALFLQGGFQMIVTQIAVGSMIGW 373

Query:   236 QLGDHG-GCSEGY-AYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAV 293
             + G +G G   G  A +IL L+CL  +G+ +SWGPL WLVPSEI PLEIRSAGQS+ V+V
Sbjct:   374 KFGFNGEGNLSGVDADIILALICLYVAGFAWSWGPLGWLVPSEICPLEIRSAGQSLNVSV 433

Query:   294 NFVFTFLTAQTFLPMLCHFKAXXXXXXXXLVLIMTSF 330
             N  FTF   Q FL MLCH K         +VLIMT F
Sbjct:   434 NMFFTFFIGQFFLTMLCHMKFGLFYFFAGMVLIMTIF 470

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2011957 STP9 "sugar transporter 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 672 (241.6 bits), Expect = 2.2e-82, Sum P(2) = 2.2e-82
 Identities = 137/302 (45%), Positives = 192/302 (63%)

Query:    34 AFNI--YMLIFGRLLLGVGIGFGNQIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSK 91
             A NI   M I   +L+   I +G       GWR+SL +AA PA I+ IG+  LP+TPNS 
Sbjct:   171 ALNIGFQMAITIGILIANLINYGTSQMAKNGWRVSLGLAAVPAVIMVIGSFVLPDTPNSM 230

Query:    92 IQRSDDHQKAQKMLQRIRGISDVKAELNDLIRASSTSKSITQPFKNIIQR-KYRPQPVMA 150
             ++R   +++A++MLQ+IRG  +V  E  DL  A   +K +  P+KNI Q+ KYRP  V  
Sbjct:   231 LERGK-YEQAREMLQKIRGADNVDEEFQDLCDACEAAKKVDNPWKNIFQQAKYRPALVFC 289

Query:   151 ILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFG 210
               IPFFQQ+TGIN++  Y+PVLF+TL   +  SL+ SAV+ G +  V  ++S+   D++G
Sbjct:   290 SAIPFFQQITGINVIMFYAPVLFKTLGFADDASLI-SAVITGAVNVVSTLVSIYAVDRYG 348

Query:   211 RKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGG--CSEGYAYLILVLVCLCSSGYCYSWGP 268
             R++LFL GG+QM+VSQ+++G+++  + G  G    +   A  IL  +CL  +G+ +SWGP
Sbjct:   349 RRILFLEGGIQMIVSQIVVGTLIGMKFGTTGSGTLTPATADWILAFICLYVAGFAWSWGP 408

Query:   269 LAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAXXXXXXXXLVLIMT 328
             L WLVPSEI PLEIR AGQ+I V+VN  FTFL  Q FL MLCH K         +V +MT
Sbjct:   409 LGWLVPSEICPLEIRPAGQAINVSVNMFFTFLIGQFFLTMLCHMKFGLFYFFGGMVAVMT 468

Query:   329 SF 330
              F
Sbjct:   469 VF 470

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2132213 STP7 "sugar transporter protein 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 679 (244.1 bits), Expect = 1.2e-81, Sum P(2) = 1.2e-81
 Identities = 129/280 (46%), Positives = 189/280 (67%)

Query:    51 IGFGNQIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRG 110
             + +G Q    WGWR+SL +AA PA ++T+G  FLPETPNS ++R    ++ +++L ++RG
Sbjct:   191 VNYGTQQLKPWGWRLSLGLAAFPALLMTLGGYFLPETPNSLVERGLT-ERGRRVLVKLRG 249

Query:   111 ISDVKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSP 170
               +V AEL D++ AS  + SI  PF+NI+Q+++RPQ VMAI +P FQ +TGIN +  Y+P
Sbjct:   250 TENVNAELQDMVDASELANSIKHPFRNILQKRHRPQLVMAICMPMFQILTGINSILFYAP 309

Query:   171 VLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIG 230
             VLF+T+  G + SL  SA+  G +  +   IS+ L D+ GR+ L + GG+QM++ QVI+ 
Sbjct:   310 VLFQTMGFGGNASLYSSALT-GAVLVLSTFISIGLVDRLGRRALLITGGIQMIICQVIVA 368

Query:   231 SIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSIT 290
              I+  + GD+   S+GY+ ++++ +CL    + +SWGPL W +PSEIFPLE RSAGQSIT
Sbjct:   369 VILGVKFGDNQELSKGYSVIVVIFICLFVVAFGWSWGPLGWTIPSEIFPLETRSAGQSIT 428

Query:   291 VAVNFVFTFLTAQTFLPMLCHFKAXXXXXXXXLVLIMTSF 330
             VAVN +FTF+ AQ FL +LC FK          V +MT F
Sbjct:   429 VAVNLLFTFIIAQAFLGLLCAFKFGIFLFFAGWVTVMTIF 468

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2092221 AT3G19940 [Arabidopsis thaliana (taxid:3702)]

 Score = 662 (238.1 bits), Expect = 2.8e-80, Sum P(2) = 2.8e-80
 Identities = 134/301 (44%), Positives = 192/301 (63%)

Query:    34 AFNI--YMLIFGRLLLGVGIGFGNQIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSK 91
             A NI   M I   +L+   I +G       GWR+SL +AA PA ++ IG+  LP+TPNS 
Sbjct:   171 ALNIGFQMAITIGILVANLINYGTSKMAQHGWRVSLGLAAVPAVVMVIGSFILPDTPNSM 230

Query:    92 IQRSDDHQKAQKMLQRIRGISDVKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAI 151
             ++R  + ++A++ML++IRG  +V  E  DLI A   +K +  P+KNI++ KYRP  +   
Sbjct:   231 LERGKN-EEAKQMLKKIRGADNVDHEFQDLIDAVEAAKKVENPWKNIMESKYRPALIFCS 289

Query:   152 LIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGR 211
              IPFFQQ+TGIN++  Y+PVLF+TL  G+  +L+ SAV+ G +  +   +S+   D++GR
Sbjct:   290 AIPFFQQITGINVIMFYAPVLFKTLGFGDDAALM-SAVITGVVNMLSTFVSIYAVDRYGR 348

Query:   212 KVLFLVGGMQMLVSQVIIGSIMAAQLGDHG-GC-SEGYAYLILVLVCLCSSGYCYSWGPL 269
             ++LFL GG+QM + Q+++GS + A+ G  G G  +   A  IL  +C+  +G+ +SWGPL
Sbjct:   349 RLLFLEGGIQMFICQLLVGSFIGARFGTSGTGTLTPATADWILAFICVYVAGFAWSWGPL 408

Query:   270 AWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAXXXXXXXXLVLIMTS 329
              WLVPSEI PLEIR AGQ+I V+VN  FTFL  Q FL MLCH K         +V IMT 
Sbjct:   409 GWLVPSEICPLEIRPAGQAINVSVNMFFTFLIGQFFLTMLCHMKFGLFYFFASMVAIMTV 468

Query:   330 F 330
             F
Sbjct:   469 F 469

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2151074 MSS1 "AT5G26340" [Arabidopsis thaliana (taxid:3702)]

 Score = 690 (248.0 bits), Expect = 1.2e-79, Sum P(2) = 1.2e-79
 Identities = 136/283 (48%), Positives = 188/283 (66%)

Query:    51 IGFGN-QIKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSD-DHQKAQKMLQRI 108
             + +G  +IKGGWGWR+SL +A  PA +LT+GA+ + ETPNS ++R   D  KA  +L+RI
Sbjct:   189 VNYGTAKIKGGWGWRLSLGLAGIPALLLTVGALLVTETPNSLVERGRLDEGKA--VLRRI 246

Query:   109 RGISDVKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLY 168
             RG  +V+ E  DL+ AS  +K +  PF+N++QR+ RPQ V+A+ +  FQQ TGIN +  Y
Sbjct:   247 RGTDNVEPEFADLLEASRLAKEVKHPFRNLLQRRNRPQLVIAVALQIFQQCTGINAIMFY 306

Query:   169 SPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVI 228
             +PVLF TL  G   SL  SAVV G +  +  ++S+   DK GR+VL L  G+QM  SQV+
Sbjct:   307 APVLFSTLGFGSDASLY-SAVVTGAVNVLSTLVSIYSVDKVGRRVLLLEAGVQMFFSQVV 365

Query:   229 IGSIMAAQLGDHG-GCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQ 287
             I  I+  ++ D     S+G+A L++V++C   + + +SWGPL WL+PSE FPLE RSAGQ
Sbjct:   366 IAIILGVKVTDTSTNLSKGFAILVVVMICTYVAAFAWSWGPLGWLIPSETFPLETRSAGQ 425

Query:   288 SITVAVNFVFTFLTAQTFLPMLCHFKAXXXXXXXXLVLIMTSF 330
             S+TV VN +FTF+ AQ FL MLCHFK          VLIM+ F
Sbjct:   426 SVTVCVNLLFTFIIAQAFLSMLCHFKFGIFIFFSAWVLIMSVF 468

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005358 "high-affinity hydrogen:glucose symporter activity" evidence=IDA

GO:0009679 "hexose:hydrogen symporter activity" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0015145 "monosaccharide transmembrane transporter activity" evidence=IMP

GO:0015749 "monosaccharide transport" evidence=IMP

GO:0043090 "amino acid import" evidence=RCA

TAIR|locus:2009323 AT1G34580 [Arabidopsis thaliana (taxid:3702)]

 Score = 599 (215.9 bits), Expect = 1.6e-71, Sum P(2) = 1.6e-71
 Identities = 129/310 (41%), Positives = 199/310 (64%)

Query:    34 AFNIYMLIFGRLLLGVGIGFGNQIKGGW-----GWRISLAMAAAPASILTIGAIFLPETP 88
             AFNI    F    + +G+   N I  G      GWRISL +AA PA+I+T+G +F+ +TP
Sbjct:   169 AFNIGFSCF----ISMGVVAANLINYGTDSHRNGWRISLGLAAVPAAIMTVGCLFISDTP 224

Query:    89 NSKIQRSDDHQKAQKMLQRIRG---ISDVKAELNDLIRASSTS-KSITQPF-KNIIQRKY 143
             +S + R   H +A   L ++RG   I+DV+ EL +L+R+S  + ++  + F K I+QR+Y
Sbjct:   225 SSLLARGK-HDEAHTSLLKLRGVENIADVETELAELVRSSQLAIEARAELFMKTILQRRY 283

Query:   144 RPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAG-GMGTVLAIIS 202
             RP  V+A++IP FQQ+TGI +   Y+PVLFR++  G   +L+ + ++    +G++L  +S
Sbjct:   284 RPHLVVAVVIPCFQQLTGITVNAFYAPVLFRSVGFGSGPALIATFILGFVNLGSLL--LS 341

Query:   203 MILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLG--DHGGCSEGYAYLILVLVCLCSS 260
              ++ D+FGR+ LF+ GG+ ML+ Q+ +  ++A  +G    G   +GYA  ++VL+C+ ++
Sbjct:   342 TMVIDRFGRRFLFIAGGILMLLCQIAVAVLLAVTVGATGDGEMKKGYAVTVVVLLCIYAA 401

Query:   261 GYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAXXXXXX 320
             G+ +SWGPL+WLVPSEIFPL+IR AGQS++VAVNF  TF  +QTFL  LC FK       
Sbjct:   402 GFGWSWGPLSWLVPSEIFPLKIRPAGQSLSVAVNFAATFALSQTFLATLCDFKYGAFLFY 461

Query:   321 XXLVLIMTSF 330
                +  MT F
Sbjct:   462 GGWIFTMTIF 471

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2195995 STP14 "sugar transport protein 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 596 (214.9 bits), Expect = 1.6e-71, Sum P(2) = 1.6e-71
 Identities = 117/271 (43%), Positives = 174/271 (64%)

Query:    61 WGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELND 120
             WGWR+SL +A  PA ++ +G + LPETPNS +++    +KA+ +L ++RG ++++AE  D
Sbjct:   201 WGWRLSLGLATVPAILMFLGGLVLPETPNSLVEQGK-LEKAKAVLIKVRGTNNIEAEFQD 259

Query:   121 LIRASSTSKSITQPFKNIIQRKYRPQPVM-AILIPFFQQVTGINIVGLYSPVLFRTLKLG 179
             L+ AS  ++++  PF+N++ R+ RPQ V+ AI +P FQQ+TG+N +  Y+PV+F++L  G
Sbjct:   260 LVEASDAARAVKNPFRNLLARRNRPQLVIGAIGLPAFQQLTGMNSILFYAPVMFQSLGFG 319

Query:   180 ESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGD 239
              S SL+ S +    +  V AI+SM  ADKFGR+ L L   ++M    V++G  +A + G+
Sbjct:   320 GSASLISSTITNAAL-VVAAIMSMYSADKFGRRFLLLEASVEMFCYMVVVGVTLALKFGE 378

Query:   240 HGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTF 299
                  +    +++VL+CL    Y  SWGP+ WLVPSE+FPLE RSAGQS+ V VN  FT 
Sbjct:   379 GKELPKSLGLILVVLICLFVLAYGRSWGPMGWLVPSELFPLETRSAGQSVVVCVNLFFTA 438

Query:   300 LTAQTFLPMLCHFKAXXXXXXXXLVLIMTSF 330
             L AQ FL  LCH K         L+L M SF
Sbjct:   439 LIAQCFLVSLCHLKYGIFLLFAGLILGMGSF 469

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005354 "galactose transmembrane transporter activity" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L7R8	STP3_ARATH	No assigned EC number	0.5474	0.9878	0.6342	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	HT4	SubName- Full=Chromosome undetermined scaffold_52, whole genome shotgun sequence; (508 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00002307001	SubName- Full=Chromosome undetermined scaffold_129, whole genome shotgun sequence; (506 aa)							•		0.481
	VvSUC11	SubName- Full=Putative uncharacterized protein (Chromosome chr18 scaffold_1, whole genome shotg [...] (501 aa)							•		0.480

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	330
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	5e-52
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	1e-47
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	1e-29
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	4e-04

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score =  177 bits (451), Expect = 5e-52
 Identities = 107/376 (28%), Positives = 179/376 (47%), Gaps = 55/376 (14%)

Query: 1   SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSA--FNIYMLIFGRLLLGVGIGFG---- 54
           SL A  +    GRK S+LIG V F+  +   G A   + YMLI GR+++G+G+G      
Sbjct: 63  SLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVLV 122

Query: 55  --------------------------------------NQIKGGWGWRISLAMAAAPASI 76
                                                 N+     GWRI L +   PA +
Sbjct: 123 PMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAIL 182

Query: 77  LTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLIRAS-STSKSITQPF 135
           L IG +FLPE+P   + +    ++A+ +L ++RG+SDV  E+ +   +   + ++    +
Sbjct: 183 LLIGLLFLPESPRWLVLK-GKLEEARAVLAKLRGVSDVDQEIQEEKDSLERSVEAEKASW 241

Query: 136 KNIIQRKYRPQPV-MAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGM 194
             + + K   Q + M +++  FQQ+TGIN +  YSP +F TL L +S    L  ++ G +
Sbjct: 242 LELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSL---LVTIIVGVV 298

Query: 195 GTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVL 254
             V   I++ L D+FGR+ L L+G   M +  +++G    A LG     S+G   + +V 
Sbjct: 299 NFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLG---VALLGVAK--SKGAGIVAIVF 353

Query: 255 VCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA 314
           + L  + +   WGP+ W++ SE+FPL +R    +I  A N++  FL    F  +      
Sbjct: 354 ILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIGG 413

Query: 315 GIFFFFGGLVLIMTSF 330
            +F  F GL+++   F
Sbjct: 414 YVFLVFAGLLVLFILF 429

Length = 449

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score =  166 bits (423), Expect = 1e-47
 Identities = 106/383 (27%), Positives = 173/383 (45%), Gaps = 58/383 (15%)

Query: 1   SLIASSVTRAIGRKVSILIGGVAFLADS---AYGGSAFNIYMLIFGRLLLGVGIGFGN-- 55
           +L A  ++   GRK S+LI  + F+  +        A ++ MLI GR+LLG+G+G  +  
Sbjct: 88  ALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASAL 147

Query: 56  ----------------------------QIKGGW------------GWRISLAMAAAPAS 75
                                        +                GWRI L +   PA 
Sbjct: 148 VPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAG 207

Query: 76  ILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLIRASSTSKSITQPF 135
           +L +G  FLPE+P   +      ++A+K L R+RG S    EL D +      +SI +  
Sbjct: 208 LLFLGLFFLPESPRW-LVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRS 266

Query: 136 KNI-------IQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSA 188
                       R+ R +  + +++ +FQQ TGIN +  YSP +F    +    + L+S 
Sbjct: 267 VQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSI 326

Query: 189 VVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYA 248
           +V G +      +++ L D+FGR+ L L+G   M +   ++G + A+ +      S    
Sbjct: 327 IV-GAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSS---G 382

Query: 249 YLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPM 308
            + +V + L  + +   WGP+ W++ SEIFPL +R  G SI VA N++  F+    F  M
Sbjct: 383 NVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTM 442

Query: 309 LCHFKAG-IFFFFGGLVLIMTSF 330
           L     G +F FFGGL ++   F
Sbjct: 443 LESIGVGGVFIFFGGLNVLGLIF 465

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score =  117 bits (296), Expect = 1e-29
 Identities = 80/310 (25%), Positives = 144/310 (46%), Gaps = 36/310 (11%)

Query: 34  AFNIYMLIFGRLLL-GVGIGFGNQIKGGW----GWRISLAMAAAPASILTIGAIFLPETP 88
           +FN + +IFG+L++  V           W    GWR   A  A PA +  +   F+PETP
Sbjct: 159 SFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETP 218

Query: 89  NSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLIRASSTSKSITQPF----KNIIQRKYR 144
              + R    ++A+ +L++I G +     L ++  +    +            +I     
Sbjct: 219 RYLMSRGKQ-EQAEGILRKIMGNTLATQALQEIKHSLDHGRKTGGKLLMFGVGVI----- 272

Query: 145 PQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMI 204
              V+ +++  FQQ  GIN+V  Y+P +F+TL      +LL + ++ G +     +++++
Sbjct: 273 ---VIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQT-IIVGVINLTFTVLAIM 328

Query: 205 LADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCY 264
             DKFGRK L ++G + M +    +G+    Q         G   L+ +L     + +  
Sbjct: 329 TVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA-------PGIVALLSMLFY--VAAFAM 379

Query: 265 SWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPML-------CHFKAGIF 317
           SWGP+ W++ SEIFP  IR    +I VA  ++  +  + TF PM+        HF  G  
Sbjct: 380 SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTF-PMMDKNSWLVAHFHNGFS 438

Query: 318 FFFGGLVLIM 327
           ++  G + ++
Sbjct: 439 YWIYGCMGVL 448

Length = 479

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 30/186 (16%), Positives = 64/186 (34%), Gaps = 13/186 (6%)

Query: 145 PQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMI 204
            + ++ + + FF    G   +  Y P+  + +    +    L   + G  G + A++  +
Sbjct: 174 LRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGL 233

Query: 205 LADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCY 264
           L+D+ GR+ L L+ G+           + A  L            L+ +L+     G+ +
Sbjct: 234 LSDRLGRRRLLLLIGL----------LLAALGLLLLALAPSLALLLVALLLLGFGLGFAF 283

Query: 265 SWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAGIFFFFGGLV 324
                     SE+ P E R     +      +   L       +L     G  F     +
Sbjct: 284 PALLTLA---SELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAAL 340

Query: 325 LIMTSF 330
            ++ + 
Sbjct: 341 ALLAAL 346

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	330
KOG0569	485	consensus Permease of the major facilitator superf	100.0
KOG0254	513	consensus Predicted transporter (major facilitator	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	100.0
PRK10077	479	xylE D-xylose transporter XylE; Provisional	100.0
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	100.0
TIGR00898	505	2A0119 cation transport protein.	100.0
PRK10642	490	proline/glycine betaine transporter; Provisional	100.0
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	100.0
PRK09952	438	shikimate transporter; Provisional	99.97
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.97
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.97
PRK12307	426	putative sialic acid transporter; Provisional	99.96
TIGR00891	405	2A0112 putative sialic acid transporter.	99.96
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.96
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.96
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.96
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.96
PRK11663	434	regulatory protein UhpC; Provisional	99.96
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.96
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.96
PRK15075	434	citrate-proton symporter; Provisional	99.95
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.95
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.95
TIGR00893	399	2A0114 d-galactonate transporter.	99.95
TIGR00895	398	2A0115 benzoate transport.	99.95
PRK09705	393	cynX putative cyanate transporter; Provisional	99.95
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.95
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.95
PRK03545	390	putative arabinose transporter; Provisional	99.94
PRK03893	496	putative sialic acid transporter; Provisional	99.94
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.94
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.94
TIGR00900	365	2A0121 H+ Antiporter protein.	99.94
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.93
PRK10091	382	MFS transport protein AraJ; Provisional	99.93
PRK05122	399	major facilitator superfamily transporter; Provisi	99.93
PRK03699	394	putative transporter; Provisional	99.93
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.93
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.93
PRK12382	392	putative transporter; Provisional	99.93
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.92
KOG2532	466	consensus Permease of the major facilitator superf	99.92
PRK09874	408	drug efflux system protein MdtG; Provisional	99.92
PRK10489	417	enterobactin exporter EntS; Provisional	99.92
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.92
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.92
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.92
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.92
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.92
PRK03633	381	putative MFS family transporter protein; Provision	99.91
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.91
PLN00028	476	nitrate transmembrane transporter; Provisional	99.91
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.91
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.9
PRK10504	471	putative transporter; Provisional	99.9
PRK11043	401	putative transporter; Provisional	99.9
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.9
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.9
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.89
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.89
PRK11010	491	ampG muropeptide transporter; Validated	99.89
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.89
PRK15011	393	sugar efflux transporter B; Provisional	99.89
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.89
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.89
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.89
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.89
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.89
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.88
PRK09528	420	lacY galactoside permease; Reviewed	99.88
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.88
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.88
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.88
PRK10054	395	putative transporter; Provisional	99.87
PRK10133	438	L-fucose transporter; Provisional	99.87
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.87
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.86
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.85
PRK11902	402	ampG muropeptide transporter; Reviewed	99.84
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.84
TIGR00901	356	2A0125 AmpG-related permease.	99.84
KOG2533	495	consensus Permease of the major facilitator superf	99.83
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.83
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.81
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.8
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.8
KOG2615	451	consensus Permease of the major facilitator superf	99.78
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.78
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.78
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.75
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.75
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.74
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.71
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.7
PTZ00207	591	hypothetical protein; Provisional	99.7
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.69
PF13347	428	MFS_2: MFS/sugar transport protein	99.69
TIGR00805	633	oat sodium-independent organic anion transporter.	99.64
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.64
PRK10429	473	melibiose:sodium symporter; Provisional	99.63
PRK09669	444	putative symporter YagG; Provisional	99.63
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.62
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.62
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.62
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.61
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.6
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.6
PRK11663	434	regulatory protein UhpC; Provisional	99.59
COG2211	467	MelB Na+/melibiose symporter and related transport	99.57
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.56
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.55
PRK09848	448	glucuronide transporter; Provisional	99.55
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.55
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.54
TIGR00895	398	2A0115 benzoate transport.	99.54
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.53
PRK03545	390	putative arabinose transporter; Provisional	99.53
PRK10054	395	putative transporter; Provisional	99.53
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.53
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.53
PRK10504	471	putative transporter; Provisional	99.52
PRK03699	394	putative transporter; Provisional	99.52
TIGR00891	405	2A0112 putative sialic acid transporter.	99.52
PRK11462	460	putative transporter; Provisional	99.51
PRK12307	426	putative sialic acid transporter; Provisional	99.51
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.5
PRK03893	496	putative sialic acid transporter; Provisional	99.49
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.49
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.49
PLN00028	476	nitrate transmembrane transporter; Provisional	99.48
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.47
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.47
PRK10091	382	MFS transport protein AraJ; Provisional	99.45
TIGR00900	365	2A0121 H+ Antiporter protein.	99.44
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.44
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.44
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.44
PRK09874	408	drug efflux system protein MdtG; Provisional	99.43
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.43
TIGR00893	399	2A0114 d-galactonate transporter.	99.43
PRK10489	417	enterobactin exporter EntS; Provisional	99.42
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.42
PRK03633	381	putative MFS family transporter protein; Provision	99.42
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.42
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.42
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.42
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.41
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.41
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.41
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.39
PRK05122	399	major facilitator superfamily transporter; Provisi	99.39
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.39
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.39
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.39
PRK12382	392	putative transporter; Provisional	99.37
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.37
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.36
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.36
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.36
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.36
PRK11043	401	putative transporter; Provisional	99.36
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.35
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.35
PRK09705	393	cynX putative cyanate transporter; Provisional	99.34
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.34
PRK15075	434	citrate-proton symporter; Provisional	99.34
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.33
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.32
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.31
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.3
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.3
PRK10642	490	proline/glycine betaine transporter; Provisional	99.29
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.27
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.25
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.24
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.21
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.21
KOG2615	451	consensus Permease of the major facilitator superf	99.19
PRK11902	402	ampG muropeptide transporter; Reviewed	99.19
TIGR00805	633	oat sodium-independent organic anion transporter.	99.19
PRK10133	438	L-fucose transporter; Provisional	99.19
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.18
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.18
PTZ00207	591	hypothetical protein; Provisional	99.18
PRK09528	420	lacY galactoside permease; Reviewed	99.16
KOG2563	480	consensus Permease of the major facilitator superf	99.16
PRK11010	491	ampG muropeptide transporter; Validated	99.15
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.14
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.13
PRK09952	438	shikimate transporter; Provisional	99.13
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.12
TIGR00898	505	2A0119 cation transport protein.	99.12
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.11
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.1
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.1
TIGR00901	356	2A0125 AmpG-related permease.	99.1
KOG2532	466	consensus Permease of the major facilitator superf	99.05
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.04
PRK15011	393	sugar efflux transporter B; Provisional	99.03
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.03
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.03
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.01
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.99
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.96
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.96
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.95
KOG0254	513	consensus Predicted transporter (major facilitator	98.92
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.9
KOG3762	618	consensus Predicted transporter [General function	98.88
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.87
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.85
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.85
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.82
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.81
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.81
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.79
KOG3626	735	consensus Organic anion transporter [Secondary met	98.78
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.75
KOG2533	495	consensus Permease of the major facilitator superf	98.71
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.69
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.66
KOG0569	485	consensus Permease of the major facilitator superf	98.65
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	98.64
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.62
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.56
PRK09669	444	putative symporter YagG; Provisional	98.55
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.46
PRK10429	473	melibiose:sodium symporter; Provisional	98.45
PF12832	77	MFS_1_like: MFS_1 like family	98.43
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.41
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.41
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.4
PRK11462	460	putative transporter; Provisional	98.39
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.36
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.35
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.33
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.3
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.3
PF13347	428	MFS_2: MFS/sugar transport protein	98.16
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.15
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.15
PRK09848	448	glucuronide transporter; Provisional	98.07
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.06
KOG3810	433	consensus Micronutrient transporters (folate trans	97.98
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.96
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.93
COG2211	467	MelB Na+/melibiose symporter and related transport	97.91
KOG2563	480	consensus Permease of the major facilitator superf	97.74
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	97.64
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	97.57
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.52
KOG0637	498	consensus Sucrose transporter and related proteins	97.17
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.16
COG0477	338	ProP Permeases of the major facilitator superfamil	97.16
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.12
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	97.09
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	96.98
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.88
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	96.58
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	96.43
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.42
KOG0637	498	consensus Sucrose transporter and related proteins	96.37
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	96.37
KOG3762	618	consensus Predicted transporter [General function	96.25
COG2270	438	Permeases of the major facilitator superfamily [Ge	96.15
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	96.13
COG0477	338	ProP Permeases of the major facilitator superfamil	95.95
KOG3098	461	consensus Uncharacterized conserved protein [Funct	95.75
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	95.74
KOG2881	294	consensus Predicted membrane protein [Function unk	95.64
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	95.56
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	95.24
KOG3626	735	consensus Organic anion transporter [Secondary met	94.93
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	94.92
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	94.78
PRK03612	521	spermidine synthase; Provisional	94.45
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	94.03
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	93.76
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	93.48
PF12832	77	MFS_1_like: MFS_1 like family	93.45
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	93.43
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	93.36
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	93.09
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	92.99
KOG3880	409	consensus Predicted small molecule transporter inv	90.61
COG3202	509	ATP/ADP translocase [Energy production and convers	90.05
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	88.83
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	85.3
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	82.6
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	80.52

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=6.7e-42  Score=279.05  Aligned_cols=322  Identities=25%  Similarity=0.423  Sum_probs=275.6

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHhhcccccccc----------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSA---FNIYMLIFGRLLLGVGIGFGNQ----------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~g~~~~----------------------   56 (330)
                      ++.|.++||+|||..+.++.++..++.++..++   +++++++++|++.|+..|....                      
T Consensus        78 ~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~  157 (485)
T KOG0569|consen   78 FSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLL  157 (485)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHH
Confidence            568999999999999999999998888887765   7889999999999999998766                      


Q ss_pred             -------------------ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhc-cCCcHHHHHHHHHHHhcccchhH
Q 043907           57 -------------------IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQ-RSDDHQKAQKMLQRIRGISDVKA  116 (330)
Q Consensus        57 -------------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~-~~~~~~~a~~~~~~~~~~~~~~~  116 (330)
                                         +.+...|++.+.+..+++++..+...++||||||+.. +++ ++||+++++.++++++.++
T Consensus       158 ~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~-~~~A~~sl~~y~G~~~~~~  236 (485)
T KOG0569|consen  158 QIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGD-EEEARKALKFYRGKEDVEA  236 (485)
T ss_pred             HHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCC-HHHHHHHHHHHhCCCcchh
Confidence                               5566789999999999999999999999999999988 677 9999999999999886555


Q ss_pred             HHHHHHHhcc---ccccCccchHHhcc-cccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHH
Q 043907          117 ELNDLIRASS---TSKSITQPFKNIIQ-RKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAG  192 (330)
Q Consensus       117 ~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  192 (330)
                      +.++..++.+   .+++++.+++++++ +..+++..+.+.+....++.+.+....|...++++.|++.+++. +.+...+
T Consensus       237 ~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~-~an~~~g  315 (485)
T KOG0569|consen  237 EIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQ-YANLGIG  315 (485)
T ss_pred             HHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHH-HHHHHHH
Confidence            5544333222   22335677889887 46777888888999999999999999999999999999999999 9999999


Q ss_pred             HHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccccccccccc
Q 043907          193 GMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWL  272 (330)
Q Consensus       193 ~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (330)
                      ....+.++++.++.||.|||++++.+..++.+..+.+..........    .++..+..+.+.+.+...++.|.+|+++.
T Consensus       316 ~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~----~~~~~y~~i~~~~~~~~~f~~G~gpi~~f  391 (485)
T KOG0569|consen  316 IVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSF----GSWLSYLCIAAIFLFIISFAIGPGPIPWF  391 (485)
T ss_pred             HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHhhhcCCCchhHH
Confidence            99999999999999999999999999999998888877664432111    01333456778888899999999999999


Q ss_pred             ccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccchhHHHHHHHHHHhhc
Q 043907          273 VPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIMTS  329 (330)
Q Consensus       273 ~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  329 (330)
                      +.+|++|++.|+++.++....+++..++....++.+.+..|...|++|.+.+.+..+
T Consensus       392 i~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i  448 (485)
T KOG0569|consen  392 IGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLI  448 (485)
T ss_pred             HHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998888888887776653

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=2e-35  Score=252.36  Aligned_cols=323  Identities=34%  Similarity=0.601  Sum_probs=266.8

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ-------------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~-------------------------   56 (330)
                      +++|+++|++|||+.++++.+.+.++++++++++|+.++.++|+++|+|.|....                         
T Consensus       107 l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~  186 (513)
T KOG0254|consen  107 LLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLF  186 (513)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999998776                         


Q ss_pred             -------------ccCc--cchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhc--ccchhHHHH
Q 043907           57 -------------IKGG--WGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRG--ISDVKAELN  119 (330)
Q Consensus        57 -------------~~~~--~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~  119 (330)
                                   ..++  ++||..+.+..+++++..+..+++||||+|+.++++ .+++++.++++++  +++.+.+.+
T Consensus       187 ~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~-~~~a~~~l~~l~g~~~~~~~~~~~  265 (513)
T KOG0254|consen  187 ITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGR-LEEAKRSLKRLRGLSPEDVEVELE  265 (513)
T ss_pred             HHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCC-hHHHHHHHHHHhCCCCcchHHHHH
Confidence                         1221  489999999999999888888889999999999999 9999999999998  345555555


Q ss_pred             HHHHhccc--c-ccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHH
Q 043907          120 DLIRASST--S-KSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGT  196 (330)
Q Consensus       120 ~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  196 (330)
                      +.+.....  + .+.+..+++++++..+++..+.+.+..++++++.+...+|.+.+++..|.+.+. . ......++...
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~-~~~~~~~~v~~  343 (513)
T KOG0254|consen  266 LLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-F-LASIILGVVNF  343 (513)
T ss_pred             HHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-H-HHHHHHHHHHH
Confidence            44422111  1 111224677777677888888999999999999999999999999999888665 4 67788888999


Q ss_pred             HHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccccccccccccccc
Q 043907          197 VLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSE  276 (330)
Q Consensus       197 ~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  276 (330)
                      ++..+...+.||+|||+.++.+...+.++.++++........... ......+..+...+++...++.+++|++|.+.+|
T Consensus       344 ~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sE  422 (513)
T KOG0254|consen  344 LGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPN-SSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSE  422 (513)
T ss_pred             HHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCC-cccchhHHHHHHHHHHHHHHhcccccchhhhhhc
Confidence            999999999999999999999999999999988876544322110 1234566777788888888999999999999999


Q ss_pred             ccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc-chhHHHHHHHHHHhh
Q 043907          277 IFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK-AGIFFFFGGLVLIMT  328 (330)
Q Consensus       277 ~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~  328 (330)
                      .+|.+.|+++.++....++..+++.......+.+..+ ...|..+++++.+..
T Consensus       423 ifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~  475 (513)
T KOG0254|consen  423 IFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSL  475 (513)
T ss_pred             cCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence            9999999999999999999999999888888887776 666666666665543

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=9.7e-36  Score=254.42  Aligned_cols=316  Identities=18%  Similarity=0.247  Sum_probs=213.1

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhh------HHHHHHHHHHhhcccccccc-------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFN------IYMLIFGRLLLGVGIGFGNQ-------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~r~l~G~~~g~~~~-------------------   56 (330)
                      +++|+++||+|||+++.++.++..+++++++++++      ++.++++|+++|++.|...+                   
T Consensus        74 ~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~  153 (502)
T TIGR00887        74 LFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMM  153 (502)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHH
Confidence            57899999999999999999999999999888765      78999999999999998766                   


Q ss_pred             --------------------c----c-------------------CccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhc
Q 043907           57 --------------------I----K-------------------GGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQ   93 (330)
Q Consensus        57 --------------------~----~-------------------~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~   93 (330)
                                          +    .                   ..++||+++.+.++++++..+..+++||||+|+..
T Consensus       154 ~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~  233 (502)
T TIGR00887       154 AAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTAD  233 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence                                1    0                   02479999999999888888888889999999998


Q ss_pred             cCCcHHHHHHHHHHHhcccchhHHHHHHHHhccccccCccchHHhcccccch---hHHHHHHHHHHHHhhhhHhHHHhHH
Q 043907           94 RSDDHQKAQKMLQRIRGISDVKAELNDLIRASSTSKSITQPFKNIIQRKYRP---QPVMAILIPFFQQVTGINIVGLYSP  170 (330)
Q Consensus        94 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  170 (330)
                      ++|+++++++.+++..+.+..++ .++.++.++++++.+.+++++++++..+   +..+......+.....++....+.|
T Consensus       234 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p  312 (502)
T TIGR00887       234 VAKDVEQAASDMSAVLQVKIEAE-PDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQK  312 (502)
T ss_pred             hCcchHHHHHHHHHHhccccccC-cccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccH
Confidence            88734556666666543321111 1111111111111223577776532211   2223223333333334456667789


Q ss_pred             HHHHhcCCCCchhh-----------HHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCC
Q 043907          171 VLFRTLKLGESTSL-----------LLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGD  239 (330)
Q Consensus       171 ~~~~~~g~~~~~~~-----------~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (330)
                      .++++.|++.....           ........++.+++.++.++++||+|||+.++.+..+.+++...+......    
T Consensus       313 ~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~----  388 (502)
T TIGR00887       313 VILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNH----  388 (502)
T ss_pred             HHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHh----
Confidence            98888888654321           012334455667788999999999999999888887777776665543210    


Q ss_pred             CCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhc-------
Q 043907          240 HGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHF-------  312 (330)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-------  312 (330)
                          ......  ..........++.+..+..+.+.+|.+|++.|+++.|+.+..++++++++|.+.+.+.+..       
T Consensus       389 ----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  462 (502)
T TIGR00887       389 ----LSTHGF--LAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYP  462 (502)
T ss_pred             ----cchhHH--HHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccccccccc
Confidence                001111  1111222222344555677778899999999999999999999999999999999998742       


Q ss_pred             ---c-chhHHHHHHHHHHhh
Q 043907          313 ---K-AGIFFFFGGLVLIMT  328 (330)
Q Consensus       313 ---g-~~~~~~~~~~~~~~~  328 (330)
                         + ...+++++++++++.
T Consensus       463 ~~~~~~~~~~i~~~~~~~~~  482 (502)
T TIGR00887       463 TGIWMGHVLEIFALFMFLGI  482 (502)
T ss_pred             ccccchHHHHHHHHHHHHHH
Confidence               3 346777777766543

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=1.5e-34  Score=250.88  Aligned_cols=309  Identities=17%  Similarity=0.186  Sum_probs=223.6

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ-------------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~-------------------------   56 (330)
                      +++|+++||+|||++++++.++.++++++++++++++.++++|+++|++.|+..+                         
T Consensus       220 li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~  299 (742)
T TIGR01299       220 FFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMF  299 (742)
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999998766                         


Q ss_pred             --------------cc-------------CccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHh
Q 043907           57 --------------IK-------------GGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIR  109 (330)
Q Consensus        57 --------------~~-------------~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~  109 (330)
                                    +.             ...+||+.+++.++++++.++..+++||||+|+..+++ .+++.+.+++++
T Consensus       300 ~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr-~~eA~~iL~~i~  378 (742)
T TIGR01299       300 WMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGK-HDEAWMILKLIH  378 (742)
T ss_pred             HHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCC-HHHHHHHHHHHh
Confidence                          10             12369999999888888887778889999999999999 999999999987


Q ss_pred             cccch-----hHH--HHHHHHhccc------cccC------------------ccchHHhcccccchhHHHHHHHHHHHH
Q 043907          110 GISDV-----KAE--LNDLIRASST------SKSI------------------TQPFKNIIQRKYRPQPVMAILIPFFQQ  158 (330)
Q Consensus       110 ~~~~~-----~~~--~~~~~~~~~~------~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (330)
                      +.+..     ...  .++.+...+.      +++.                  ..+++++++++.+++.++...+ ++..
T Consensus       379 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~-wf~~  457 (742)
T TIGR01299       379 DTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGV-WFTL  457 (742)
T ss_pred             cCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHH-HHHH
Confidence            65521     110  0011100000      0000                  0135667766666666655555 4555


Q ss_pred             hhhhHhHHHhHHHHHHhc------------------------------------------CC-----C------------
Q 043907          159 VTGINIVGLYSPVLFRTL------------------------------------------KL-----G------------  179 (330)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~------------------------------------------g~-----~------------  179 (330)
                      ..+++.+..|+|.++++.                                          |+     +            
T Consensus       458 ~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  537 (742)
T TIGR01299       458 SFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFD  537 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhccccccccccccccccccee
Confidence            678899999999875331                                          00     0            


Q ss_pred             ----C-----------------------------------------------c-----hhhHHHHHHHHHHHHHHHHHHH
Q 043907          180 ----E-----------------------------------------------S-----TSLLLSAVVAGGMGTVLAIISM  203 (330)
Q Consensus       180 ----~-----------------------------------------------~-----~~~~~~~~~~~~~~~~~~~~~g  203 (330)
                          .                                               +     ... ....+..++.+++.++.+
T Consensus       538 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~-~~~~l~~l~~i~G~il~g  616 (742)
T TIGR01299       538 DVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIY-FVNFLGTLAVLPGNIVSA  616 (742)
T ss_pred             eccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHH-HHHHHHHHHHHHHHHHHH
Confidence                0                                               0     012 345667789999999999


Q ss_pred             HHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhh
Q 043907          204 ILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIR  283 (330)
Q Consensus       204 ~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r  283 (330)
                      +++||+|||+++..+.++.+++.+++.+.             .+....++..++.+.+.+. ..+....+++|.+|++.|
T Consensus       617 ~L~Dr~GRr~~l~~~~~lsai~~ll~~~~-------------~s~~~ll~~~~l~g~~~~~-~~~~~~a~~aEl~Pt~~R  682 (742)
T TIGR01299       617 LLMDKIGRLRMLAGSMVLSCISCFFLSFG-------------NSESAMIALLCLFGGLSIA-AWNALDVLTVELYPSDKR  682 (742)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHHHH-------------ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCHHHH
Confidence            99999999999998888888887776654             2222233333333333332 334566788999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHHHhhhhHHhhccchhHHHHHHHHHHh
Q 043907          284 SAGQSITVAVNFVFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIM  327 (330)
Q Consensus       284 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  327 (330)
                      ++++|+.++..++|++++|.+.+.+.+.....++++++++.+++
T Consensus       683 gta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~  726 (742)
T TIGR01299       683 ATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACG  726 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999887754455666666555544

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=100.00  E-value=7e-40  Score=277.49  Aligned_cols=321  Identities=29%  Similarity=0.588  Sum_probs=250.0

Q ss_pred             CcchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHhhcccccccc---------------------
Q 043907            1 SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAF---NIYMLIFGRLLLGVGIGFGNQ---------------------   56 (330)
Q Consensus         1 ~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~r~l~G~~~g~~~~---------------------   56 (330)
                      +++.|.++||+|||+.+.++.++..+++++.++++   |++.+.++|+++|++.|...+                     
T Consensus        63 ~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~  142 (451)
T PF00083_consen   63 ALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSL  142 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            46789999999999999999999999999999999   999999999999999998776                     


Q ss_pred             ------------------c---cCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchh
Q 043907           57 ------------------I---KGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVK  115 (330)
Q Consensus        57 ------------------~---~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~  115 (330)
                                        .   .+..+||+.+.+..+++++..+...++||||+|+..++| .|||++.++++++++..+
T Consensus       143 ~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~-~~~A~~~l~~~~~~~~~~  221 (451)
T PF00083_consen  143 FQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGR-DEEAEKVLRKLRGKEIED  221 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccceeccccc-cccccccccccccccccc
Confidence                              1   112459999999999988877778889999999999999 889999999977766555


Q ss_pred             HHHHHHHHhccccccCccchHHhccccc-chhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHH
Q 043907          116 AELNDLIRASSTSKSITQPFKNIIQRKY-RPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGM  194 (330)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  194 (330)
                      ++.++..++.++.++.+.+++++++++. +++....+.+..+....+......|.+.++++.+.+..  . .......+.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~-~~~~~~~~~  298 (451)
T PF00083_consen  222 EEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--F-LATLILGLV  298 (451)
T ss_pred             ccccccccccccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccc--c-ccccccccc
Confidence            5554444444444333466777776543 56667767777777777777788888888888887776  2 445566677


Q ss_pred             HHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccccccccccccc
Q 043907          195 GTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVP  274 (330)
Q Consensus       195 ~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (330)
                      ..++.++...+.||+|||+.++.+...+.++.+.+......  ..+  .++......+.+.......++.++++..+.++
T Consensus       299 ~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~  374 (451)
T PF00083_consen  299 NFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFL--GVS--SSSWWSILSIVFLALFFAFFSLGWGPLPWIYT  374 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccc--ccc--cccccccccceeeeeccccccccccccccccc
Confidence            88888888899999999999999988888777766511000  000  00112333444455555667778888888999


Q ss_pred             ccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc-chhHHHHHHHHHHhhc
Q 043907          275 SEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK-AGIFFFFGGLVLIMTS  329 (330)
Q Consensus       275 ~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~  329 (330)
                      +|.+|++.|+++.++....+++++++.+.+.+.+.+..+ +..+.++++++++..+
T Consensus       375 ~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i  430 (451)
T PF00083_consen  375 AELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAII  430 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHh
Confidence            999999999999999999999999999999999988887 7778887777666543

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=100.00  E-value=1.9e-32  Score=234.01  Aligned_cols=311  Identities=25%  Similarity=0.487  Sum_probs=215.2

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhh------------hhHHHHHHHHHHhhcccccccc-------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSA------------FNIYMLIFGRLLLGVGIGFGNQ-------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~r~l~G~~~g~~~~-------------   56 (330)
                      +++|+++||+|||+++..+..+..++.+.++++            +++..++++|+++|++.|...+             
T Consensus        73 ~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~  152 (479)
T PRK10077         73 ALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAH  152 (479)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChh
Confidence            678999999999999999999999998887763            2356788999999999998777             


Q ss_pred             --------------------------c--------cCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHH
Q 043907           57 --------------------------I--------KGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQ  102 (330)
Q Consensus        57 --------------------------~--------~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~  102 (330)
                                                +        .+.++||+.|++.+++.++..+..+++||+|+|+..+++ .++++
T Consensus       153 ~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~-~~~~~  231 (479)
T PRK10077        153 IRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGK-QEQAE  231 (479)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCC-HHHHH
Confidence                                      0        134689999999888777776667789999999887777 77777


Q ss_pred             HHHHHHhcccchhHHHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCch
Q 043907          103 KMLQRIRGISDVKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGEST  182 (330)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  182 (330)
                      +..++..+.++.+.+.++..+..+++++   ..+..+. ..............+.+..+.+...++.|.+.++.|.+...
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~  307 (479)
T PRK10077        232 GILRKIMGNTLATQALQEIKHSLDHGRK---TGGKLLM-FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDI  307 (479)
T ss_pred             HHHHHHcCChhHHHHHHHHHHHHHHhhh---hhhhhcc-hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCch
Confidence            7666655443322222222211111010   0011111 11111222223334444455566677889998888988777


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccc
Q 043907          183 SLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGY  262 (330)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (330)
                      .. ......++...++.++.++++||+|||+.++.+..++.++.+.+.....         ............+.+..++
T Consensus       308 ~~-~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~---------~~~~~~~~~~~~~~~~~~~  377 (479)
T PRK10077        308 AL-LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY---------TQAPGIVALLSMLFYVAAF  377 (479)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHh---------cCcccHHHHHHHHHHHHHH
Confidence            76 6777788899999999999999999999999998888887777654321         0111222333344444445


Q ss_pred             ccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHH------hhcc-chhHHHHHHHHHHh
Q 043907          263 CYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPML------CHFK-AGIFFFFGGLVLIM  327 (330)
Q Consensus       263 ~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~g-~~~~~~~~~~~~~~  327 (330)
                      +..+.|..+.+++|.+|+++|+++.|+.+...++++++++.+.+.+.      +..+ ...|++++++++++
T Consensus       378 ~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (479)
T PRK10077        378 AMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLA  449 (479)
T ss_pred             hccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHH
Confidence            54556677788899999999999999999999999999988876554      3455 45666666555443

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=1e-32  Score=211.40  Aligned_cols=308  Identities=16%  Similarity=0.198  Sum_probs=220.3

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ-------------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~-------------------------   56 (330)
                      -.+|.++|++|||+.+.+......+...+.+.++|+..+++.|.+.|+|.|+ .|                         
T Consensus       131 ~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~~~w  209 (528)
T KOG0253|consen  131 MVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMSFFW  209 (528)
T ss_pred             hhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHHHHH
Confidence            4689999999999999999999999999999999999999999999999999 55                         


Q ss_pred             -------------ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccch---------
Q 043907           57 -------------IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDV---------  114 (330)
Q Consensus        57 -------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~---------  114 (330)
                                   .....||||.......+..+.+...+++|||||++..+++ .++|.+.++++...|..         
T Consensus       210 aig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~-~~kAletL~kiArmNg~qlplgvl~~  288 (528)
T KOG0253|consen  210 AIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGD-DYKALETLHKIARMNGKQLPLGVLES  288 (528)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCC-hHHHHHHHHHHHHhcCCCCCcceeee
Confidence                         4455799998888888888888888889999999999999 99999988887665511         


Q ss_pred             --hHHHHHHH----H-hccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcC----------
Q 043907          115 --KAELNDLI----R-ASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLK----------  177 (330)
Q Consensus       115 --~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----------  177 (330)
                        .++.++..    + +.+..++.+.+..+++.++.++..+......+... ..++........+++.-.          
T Consensus       289 s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgna-fsyyg~VLlttelfqsgd~c~~~~r~~p  367 (528)
T KOG0253|consen  289 SAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNA-FSYYGSVLLTTELFQSGDACPLYNRFLP  367 (528)
T ss_pred             ehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHhccCccccchhcch
Confidence              11111111    1 11122334556778887777777666555544433 334444444444433211          


Q ss_pred             ----------CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcch
Q 043907          178 ----------LGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGY  247 (330)
Q Consensus       178 ----------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (330)
                                .+..... .-.....+....|.++.++++||+|||+.+....++++++.+.+....           ..+
T Consensus       368 ~e~e~~~~c~~s~~~dY-rdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~-----------~rn  435 (528)
T KOG0253|consen  368 TELETRANCPLSVAKDY-RDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCK-----------TRN  435 (528)
T ss_pred             hHHHhhhcCCccchhHH-HHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhc-----------Ccc
Confidence                      1112222 456777889999999999999999999999999999998888877652           122


Q ss_pred             hHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccchhHHHHHHHHHHh
Q 043907          248 AYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIM  327 (330)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  327 (330)
                      .  .....+....+.+.++. ..++|..|++|+..|+++.|.+..++++|+++.|.+. ...+..-..+..+++++++++
T Consensus       436 ~--~tvllf~arafisg~fq-vaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA-~~~e~s~sl~i~vy~~~~ila  511 (528)
T KOG0253|consen  436 A--YTVLLFTARAFISGAFQ-VAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA-MRAELSTSLPIFVYGALFILA  511 (528)
T ss_pred             h--hHHHHHHHHHHHhchhe-EEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH-HHhccceeehHHHHHHHHHHH
Confidence            2  22222333333344444 6689999999999999999999999999999999988 333332245555555555544


Q ss_pred             h
Q 043907          328 T  328 (330)
Q Consensus       328 ~  328 (330)
                      .
T Consensus       512 g  512 (528)
T KOG0253|consen  512 G  512 (528)
T ss_pred             H
Confidence            3

>TIGR00898 2A0119 cation transport protein

Probab=100.00  E-value=9.2e-32  Score=231.04  Aligned_cols=305  Identities=19%  Similarity=0.275  Sum_probs=207.1

Q ss_pred             CcchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc------------------------
Q 043907            1 SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------   56 (330)
Q Consensus         1 ~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------   56 (330)
                      +++.|+++||+|||+++.++.++.+++.+++++++|++.+++.|++.|++.+...+                        
T Consensus       144 ~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~  223 (505)
T TIGR00898       144 SFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQV  223 (505)
T ss_pred             HHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHH
Confidence            36789999999999999999999999999999999999999999999999998665                        


Q ss_pred             -----------cc-CccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchh--HHHHHHH
Q 043907           57 -----------IK-GGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVK--AELNDLI  122 (330)
Q Consensus        57 -----------~~-~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~  122 (330)
                                 +. -..+||+.+++.+++.++..+..+++||+|+|+..+++ .+++.+.+++..+.+..+  .+..+..
T Consensus       224 ~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~-~~~a~~~l~~~~~~~~~~~~~~~~~~~  302 (505)
T TIGR00898       224 FFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGR-IEEALKILQRIAKINGKKLPAEVLSLS  302 (505)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCCC-HHHHHHHHHHHHHHcCCCCCHHHHhhh
Confidence                       00 01249999999988888777777889999999999999 888888877765544211  1111111


Q ss_pred             -HhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHH
Q 043907          123 -RASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAII  201 (330)
Q Consensus       123 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  201 (330)
                       ++.+++++++.+++++++++..+...+......+.....++.    .+...+..+.+.   . ......++..+++.++
T Consensus       303 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~---~-~~~~~~~~~~i~~~~~  374 (505)
T TIGR00898       303 LEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYG----LVLDLGNLGGNI---Y-LDLFISGLVELPAKLI  374 (505)
T ss_pred             hhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHH----HhccccccCCCh---H-HHHHHHHHHHHHHHHH
Confidence             111111112346778877655554444443333322222222    222223333332   2 3455667888899999


Q ss_pred             HHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchh
Q 043907          202 SMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLE  281 (330)
Q Consensus       202 ~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  281 (330)
                      .+++.||+|||+.+..+..+.+++.+.+...           +....+.......+...+....+ +..+.+.+|.+|++
T Consensus       375 ~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~p~~  442 (505)
T TIGR00898       375 TLLLIDRLGRRYTMAASLLLAGVALLLLLFV-----------PVDLYFLRTALAVLGKFGITSAF-QMVYLYTAELYPTV  442 (505)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHc-----------CCCchHHHHHHHHHHHHHHHHHH-HHHHHHhcccccHH
Confidence            9999999999999998888877776665543           11212222222233222322222 35567778999999


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccchhHHHHHHHHHHh
Q 043907          282 IRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIM  327 (330)
Q Consensus       282 ~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  327 (330)
                      .|+++.|+.++...+++.++|.+.+ +.+......+++++++.+++
T Consensus       443 ~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~~~~~~~~~~~~~~~~  487 (505)
T TIGR00898       443 VRNLGVGVCSTMARVGSIISPFLVY-LGEKWLFLPLVLFGGLALLA  487 (505)
T ss_pred             HHhhhHhHHHHHHHHHHHHHhHHHH-HHHHHHhhHHHHHHHHHHHH
Confidence            9999999999999999999999998 44433355666666555444

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=100.00  E-value=1.8e-31  Score=227.40  Aligned_cols=276  Identities=17%  Similarity=0.175  Sum_probs=185.6

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHH--------HHHHHHHhhcccccccc-----------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYM--------LIFGRLLLGVGIGFGNQ-----------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~r~l~G~~~g~~~~-----------------   56 (330)
                      ++.|+++||+|||+++.++.++++++++++++++|+.+        +++.|+++|++.|+..+                 
T Consensus        75 ~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~  154 (490)
T PRK10642         75 LFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGF  154 (490)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcH
Confidence            57899999999999999999999999999999999875        89999999999998776                 


Q ss_pred             ----------------------c--------cCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHH
Q 043907           57 ----------------------I--------KGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQ  106 (330)
Q Consensus        57 ----------------------~--------~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~  106 (330)
                                            +        .+.+|||++|++.++++++..+....+||+|+|...+++ .++..    
T Consensus       155 ~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~-~~~~~----  229 (490)
T PRK10642        155 MGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDK-LEQGD----  229 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHh-hhhhc----
Confidence                                  1        125799999999887666655556679999986532222 11100    


Q ss_pred             HHhcccchhHHHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCchhhH
Q 043907          107 RIRGISDVKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLL  185 (330)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~  185 (330)
                                     ++  ..+++++.++++++++ .++....... ..+.....++....|.|.+++ ..|++..+.. 
T Consensus       230 ---------------~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~-  289 (490)
T PRK10642        230 ---------------RE--GLQDGPKVSFKEIATK-HWRSLLTCIG-LVIATNVTYYMLLTYMPSYLSHNLHYSEDHGV-  289 (490)
T ss_pred             ---------------cc--cccccccCCHHHHHHH-hHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-
Confidence                           00  0001123356666643 2233332222 223333556677788998885 5688877766 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccc
Q 043907          186 LSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYS  265 (330)
Q Consensus       186 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (330)
                      .......++..++.++.|+++||+|||+.+..+.....+.........          ...+.........+.+.+.+..
T Consensus       290 ~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~~~~  359 (490)
T PRK10642        290 LIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILI----------NSNVIGLIFAGLLMLAVILNCF  359 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH----------hCCCHHHHHHHHHHHHHHHHHH
Confidence            677777888999999999999999999988777654443332221111          0111222222222222222223


Q ss_pred             cccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907          266 WGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK  313 (330)
Q Consensus       266 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g  313 (330)
                      .+ ....+..|.+|++.|+++.|+.+.....++.++|.+.+.+.+..+
T Consensus       360 ~g-~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~  406 (490)
T PRK10642        360 TG-VMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQ  406 (490)
T ss_pred             HH-HHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            33 234455799999999999998777788888999999999887655

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=100.00  E-value=2.4e-30  Score=221.56  Aligned_cols=321  Identities=32%  Similarity=0.633  Sum_probs=221.0

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHhhcccccccc----------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSA---FNIYMLIFGRLLLGVGIGFGNQ----------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~g~~~~----------------------   56 (330)
                      +++|+++||+|||+++..+.++..++.+++.+.   .+++.+++.|+++|++.+...+                      
T Consensus        89 ~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~  168 (481)
T TIGR00879        89 LFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLY  168 (481)
T ss_pred             HHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHH
Confidence            578999999999999999999999999998654   3456899999999999988766                      


Q ss_pred             -------------cc-------CccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhH
Q 043907           57 -------------IK-------GGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKA  116 (330)
Q Consensus        57 -------------~~-------~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~  116 (330)
                                   +.       +..+||+.|++.++..++..+..+++||+|+++..+++ .+++++..++..+.++.+.
T Consensus       169 ~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  247 (481)
T TIGR00879       169 QLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGR-VEEARKSLARLRGTSGEDK  247 (481)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCC-hHHHHHHHHHHhCCCCCcH
Confidence                         23       45689999999777777666667789999988766666 5555555444433221111


Q ss_pred             HHHH----HHHhcc-ccccCccchHHhcccc--cchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHH
Q 043907          117 ELND----LIRASS-TSKSITQPFKNIIQRK--YRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAV  189 (330)
Q Consensus       117 ~~~~----~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  189 (330)
                      +..+    .+...+ +.+..+..+++.++..  ..++.++...+..+...........+.|.+.++.|++..+.. ....
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~  326 (481)
T TIGR00879       248 ELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAF-LVSI  326 (481)
T ss_pred             HHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHH-HHHH
Confidence            1110    000000 0111112233443211  234555555555555555556677888988888999987777 8888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccc
Q 043907          190 VAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPL  269 (330)
Q Consensus       190 ~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (330)
                      ...+..+++.++.+++.||++||+.+..+..+..++.+.+.......  .. ..++............+..+++.+..+.
T Consensus       327 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (481)
T TIGR00879       327 IVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASF--VT-GSSKSSGNVAIVFILLFIAFFAMGWGPV  403 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcc--cC-CcccchhHHHHHHHHHHHHHHHccccCe
Confidence            88999999999999999999999998888777777666655321110  00 0000112333333444444555566677


Q ss_pred             cccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHHHHHHHh
Q 043907          270 AWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFGGLVLIM  327 (330)
Q Consensus       270 ~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~  327 (330)
                      ...++.|.+|++.|+++.|+.+...++++++++.+.+.+.++.++ ..|++.+++++++
T Consensus       404 ~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~  462 (481)
T TIGR00879       404 PWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLG  462 (481)
T ss_pred             ehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHH
Confidence            777778999999999999999999999999999999999998774 5566666665543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK09952 shikimate transporter; Provisional

Probab=99.97  E-value=3.4e-29  Score=210.45  Aligned_cols=268  Identities=16%  Similarity=0.203  Sum_probs=174.3

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHH--------HHHHHHHHhhcccccccc-----------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIY--------MLIFGRLLLGVGIGFGNQ-----------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~g~~~~-----------------   56 (330)
                      ++.|+++||+|||+++..+.++++++++++++++|+.        .+++.|+++|++.|...+                 
T Consensus        82 ~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~  161 (438)
T PRK09952         82 VVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAF  161 (438)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcH
Confidence            4579999999999999999999999999999999987        588999999999998765                 


Q ss_pred             ----------------------cc--------CccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHH
Q 043907           57 ----------------------IK--------GGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQ  106 (330)
Q Consensus        57 ----------------------~~--------~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~  106 (330)
                                            +.        ..+|||++|++.+++.++........||+|+|..++++ .+       
T Consensus       162 ~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~-~~-------  233 (438)
T PRK09952        162 YSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHE-QA-------  233 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhh-cc-------
Confidence                                  11        24799999999887766655555568888865322111 00       


Q ss_pred             HHhcccchhHHHHHHHHhccccccCccchHH-hcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCchhh
Q 043907          107 RIRGISDVKAELNDLIRASSTSKSITQPFKN-IIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSL  184 (330)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~  184 (330)
                                           +++++.+..+ +++++   +.+.......+......+....+.|.+.+ +.|+++....
T Consensus       234 ---------------------~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~  289 (438)
T PRK09952        234 ---------------------AAKKRIPVIEALLRHP---GAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFL  289 (438)
T ss_pred             ---------------------cccccCCHHHHHHHch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence                                 0000111222 22221   11222222222233445566677777774 5677776544


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccc
Q 043907          185 LLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCY  264 (330)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (330)
                       ......++...++.++.|+++||+|||+.+..+..+..++...+.....         .....+.......+...+.+.
T Consensus       290 -~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~~~  359 (438)
T PRK09952        290 -NIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALE---------AQSIFWIVFFSIMLANIAHDM  359 (438)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH---------cCChHHHHHHHHHHHHHHHHH
Confidence             4555667778888999999999999999888776555444333222110         011222222222222223222


Q ss_pred             ccccccccccccccchhhhhhhhhHHHHHHH-HHHHHHHHhhhhHHhhc
Q 043907          265 SWGPLAWLVPSEIFPLEIRSAGQSITVAVNF-VFTFLTAQTFLPMLCHF  312 (330)
Q Consensus       265 ~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~  312 (330)
                      . .+..+.+++|.+|++.|+++.|+.+.... +++.++|.+.+.+.+..
T Consensus       360 ~-~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~  407 (438)
T PRK09952        360 V-VCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYF  407 (438)
T ss_pred             H-HHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            2 23446677899999999999999776654 78899999999998855

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.97  E-value=1.3e-28  Score=207.08  Aligned_cols=263  Identities=19%  Similarity=0.198  Sum_probs=170.5

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHH--------HHHHHHHHhhcccccccc-----------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIY--------MLIFGRLLLGVGIGFGNQ-----------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~g~~~~-----------------   56 (330)
                      +++|+++||+|||+++..+.++++++++++++++++.        .+++.|+++|++.|...+                 
T Consensus        81 ~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~  160 (432)
T PRK10406         81 WLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGF  160 (432)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccH
Confidence            5789999999999999999999999999999998864        689999999999998776                 


Q ss_pred             ----------------------cc--------CccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHH
Q 043907           57 ----------------------IK--------GGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQ  106 (330)
Q Consensus        57 ----------------------~~--------~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~  106 (330)
                                            +.        +.+|||++|++.+++.++.......+||+|++        ++.     
T Consensus       161 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~--------~~~-----  227 (432)
T PRK10406        161 YASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQ--------ETR-----  227 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchH--------HHh-----
Confidence                                  11        25799999999888877765555567887642        100     


Q ss_pred             HHhcccchhHHHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCchhhH
Q 043907          107 RIRGISDVKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLL  185 (330)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~  185 (330)
                                      +  +   +++.+++++++++   +.+.......+.....++....|.|.+++ ..|.+..+.+ 
T Consensus       228 ----------------~--~---~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~-  282 (432)
T PRK10406        228 ----------------A--L---KEAGSLKGLWRNR---RAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVAS-  282 (432)
T ss_pred             ----------------h--h---cccccHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-
Confidence                            0  0   0012455555422   22222222222223445667788888875 5788887777 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccc
Q 043907          186 LSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYS  265 (330)
Q Consensus       186 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (330)
                      ...+...+...++.++.|+++||++||+.+.....+..+....+.....         ...+...............+. 
T Consensus       283 ~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~-  352 (432)
T PRK10406        283 GIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQ---------NVSSPYAAFGLVMCALLIVSF-  352 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH---------cCCcHHHHHHHHHHHHHHHHH-
Confidence            6677777778888999999999999999876655544333322211110         001112111111111111111 


Q ss_pred             cccccccccccccchhhhhhhhhHHHHHHHHH-HHHHHHhhhhHHhhcc
Q 043907          266 WGPLAWLVPSEIFPLEIRSAGQSITVAVNFVF-TFLTAQTFLPMLCHFK  313 (330)
Q Consensus       266 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~g  313 (330)
                      ..+..+.+.+|.+|++.|+++.|+.+..++.. +...|.+.+ +.+..|
T Consensus       353 ~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~-~l~~~g  400 (432)
T PRK10406        353 YTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVAL-SLKSIG  400 (432)
T ss_pred             HHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHH-HHHHhC
Confidence            12234566789999999999999999877653 445666666 445556

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.97  E-value=3.8e-28  Score=201.52  Aligned_cols=282  Identities=13%  Similarity=0.051  Sum_probs=190.8

Q ss_pred             CcchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc------------------------
Q 043907            1 SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------   56 (330)
Q Consensus         1 ~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------   56 (330)
                      +++.|+++||+|||+++..+.++.+++.+.+++++|++.+++.|++.|++.+...+                        
T Consensus        55 ~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (377)
T TIGR00890        55 MPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFPDKRGLASGIIIGG  134 (377)
T ss_pred             hhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCcccHHHHHHHHHh
Confidence            36789999999999999999999999999999999999999999999999886543                        


Q ss_pred             --------------ccCccchHHHHHhhhHHHHHHHHHHh-hcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHH
Q 043907           57 --------------IKGGWGWRISLAMAAAPASILTIGAI-FLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDL  121 (330)
Q Consensus        57 --------------~~~~~~wr~~~~~~~~~~~~~~~~~~-~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  121 (330)
                                    +.+..+||+.|++.++..++..+..+ +++|+|+.. ++++  +                      
T Consensus       135 ~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~----------------------  189 (377)
T TIGR00890       135 YGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQL-IKTN--I----------------------  189 (377)
T ss_pred             cchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchhc-cccC--c----------------------
Confidence                          33446899999998887766655543 455443210 0000  0                      


Q ss_pred             HHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHH
Q 043907          122 IRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAII  201 (330)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  201 (330)
                           +.++++.+.++.++++..+....    ..+...........+.+.+.++.|.++.+.+ .......+...+++++
T Consensus       190 -----~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  259 (377)
T TIGR00890       190 -----EVSVKDYTVWEMLRTPQFWVLYL----SFFLNAVSGLLLIGLYKPYGQSLGLSDGFLV-LAVSISSIFNGGGRPF  259 (377)
T ss_pred             -----ccchhhhhHHHHHcCccHHHHHH----HHHHHhHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHH
Confidence                 00000112333443332222222    1222222223334455666677888877777 7888899999999999


Q ss_pred             HHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchh
Q 043907          202 SMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLE  281 (330)
Q Consensus       202 ~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  281 (330)
                      .+++.||+|||+.+..+.....++.+.+...           +..............+.+.+... +....++.|.+|++
T Consensus       260 ~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~g~~~g~~~-~~~~~~~~~~~~~~  327 (377)
T TIGR00890       260 LGALSDKIGRQKTMSIVFGISAVGMAAMLFI-----------PMLNDVLFLATVALVFFTWGGTI-SLFPSLVSDIFGPA  327 (377)
T ss_pred             HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHc-----------ccchhHHHHHHHHHHHHHhccch-hccHHHHHHHhhhh
Confidence            9999999999999888877777766555432           11112222222222333333222 23345668999999


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHHHHHHHhhc
Q 043907          282 IRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFGGLVLIMTS  329 (330)
Q Consensus       282 ~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~  329 (330)
                      +|+++.|+.+....+++.++|.+.+.+.++.|+ ..+.+.+++++++.+
T Consensus       328 ~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~~  376 (377)
T TIGR00890       328 NSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSLA  376 (377)
T ss_pred             hhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999885 566677766666543

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.96  E-value=5.5e-28  Score=203.56  Aligned_cols=276  Identities=16%  Similarity=0.174  Sum_probs=182.9

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ-------------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~-------------------------   56 (330)
                      ++.|+++||+|||+++..+.++.+++.++++++++++.++++|+++|++.|...+                         
T Consensus        71 ~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  150 (426)
T PRK12307         71 ALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSG  150 (426)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHH
Confidence            5789999999999999999999999999999999999999999999999887665                         


Q ss_pred             --------------ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHHH
Q 043907           57 --------------IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLI  122 (330)
Q Consensus        57 --------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  122 (330)
                                    +.+..+||+.|++..+..++........||++++..++.+   +          +++         
T Consensus       151 ~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~---~----------~~~---------  208 (426)
T PRK12307        151 FGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLS---G----------KGK---------  208 (426)
T ss_pred             HhHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhh---c----------ccc---------
Confidence                          3456799999988655444333333335666543111000   0          000         


Q ss_pred             HhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHH
Q 043907          123 RASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIIS  202 (330)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  202 (330)
                      +..+..+..+.++++.++++..+......... +...........+.|.+.++.|.++.+.+ ...+...++.+++.++.
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~g~~~~  286 (426)
T PRK12307        209 HSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVL-FSIFGANWPIFGLLPTYLAGEGFDTGVVS-NLMTAAAFGTVLGNIVW  286 (426)
T ss_pred             ccccchhhhhHHHHHHHhhchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHH
Confidence            00000000112355566544433333222222 22223333456678888888888888877 77788889999999999


Q ss_pred             HHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcc-cccccccccccccccccchh
Q 043907          203 MILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSG-YCYSWGPLAWLVPSEIFPLE  281 (330)
Q Consensus       203 g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~e~~p~~  281 (330)
                      +++.||++||+....+..+..+..+.+...           +.......  ....++.+ ...+..+....++.|.+|++
T Consensus       287 g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  353 (426)
T PRK12307        287 GLCADRIGLKKTFSIGLLMSFLFIFPLFRI-----------PQDNYLLL--GACLFGLMATNVGVGGLVPKFLYDYFPLE  353 (426)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHH-----------ccccHHHH--HHHHHHHHHhcccHhHHHHHHHHHhCcHH
Confidence            999999999998887776665554433322           11111111  11111111 11222333445568999999


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc
Q 043907          282 IRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA  314 (330)
Q Consensus       282 ~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~  314 (330)
                      .|+++.|+.+....+++.++|.+.+.+.+..|.
T Consensus       354 ~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~  386 (426)
T PRK12307        354 VRGLGTGLIYNLAATSGTFNSMAATWLGITMGL  386 (426)
T ss_pred             HHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccH
Confidence            999999999999999999999999999998883

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.96  E-value=7.3e-28  Score=201.73  Aligned_cols=286  Identities=15%  Similarity=0.130  Sum_probs=181.1

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ-------------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~-------------------------   56 (330)
                      ++.|.++||+|||+++..+.++.+++.++++++++++.+++.|+++|++.+...+                         
T Consensus        65 ~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  144 (405)
T TIGR00891        65 LMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISG  144 (405)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHH
Confidence            6789999999999999999999999999999999999999999999999888765                         


Q ss_pred             --------------ccCcc--chHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHH
Q 043907           57 --------------IKGGW--GWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELND  120 (330)
Q Consensus        57 --------------~~~~~--~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  120 (330)
                                    +.+..  +||+.|.+.+++.++..+....+||+|++..++++ .++.++..++..+.++   ..  
T Consensus       145 ~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~--  218 (405)
T TIGR00891       145 YAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAG-KALVRTMVDILYGGEH---RI--  218 (405)
T ss_pred             HHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhh-hhhhhhHHHHHhccch---hh--
Confidence                          22233  49999988777666666666678998764322211 1111111111110000   00  


Q ss_pred             HHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHHHH
Q 043907          121 LIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTVLA  199 (330)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~  199 (330)
                       +.   ..++.....++.  ....+..+...................+.|.++ ++.|++..+.+ .......++.+++.
T Consensus       219 -~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~-~~~~~~~~~~~~g~  291 (405)
T TIGR00891       219 -AN---IVMTLAAAMVQS--AGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVA-NIVVFSNIGAIVGG  291 (405)
T ss_pred             -hh---hhhhhhHHhhhh--hhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHH
Confidence             00   000000011111  111111121122222211222234445667666 46789988888 88888999999999


Q ss_pred             HHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccc
Q 043907          200 IISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFP  279 (330)
Q Consensus       200 ~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p  279 (330)
                      ++.+++.||+|||+.+..+.....+........            ..+.+.............. +..+....++.|.+|
T Consensus       292 ~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  358 (405)
T TIGR00891       292 CVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAI------------GANVAVLGLGLFFQQMLVQ-GIWGILPKHLGEYFP  358 (405)
T ss_pred             HHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHh------------CCchHHHHHHHHHHHHHHc-cchhhHHHHHhhhCC
Confidence            999999999999998877765543322222111            1222222222222222222 222344556689999


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907          280 LEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK  313 (330)
Q Consensus       280 ~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g  313 (330)
                      +++|+++.|+.+....+++.++|.+.+.+.|..|
T Consensus       359 ~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g  392 (405)
T TIGR00891       359 TDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLD  392 (405)
T ss_pred             cchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999988

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.96  E-value=4e-28  Score=202.42  Aligned_cols=297  Identities=14%  Similarity=0.132  Sum_probs=186.4

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ-------------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~-------------------------   56 (330)
                      ++.|+++||+|||+++..+.++++++++++++++|++++++.|+++|++.+...+                         
T Consensus        61 ~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~  140 (412)
T TIGR02332        61 IPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIA  140 (412)
T ss_pred             hhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999998766                         


Q ss_pred             --------------cc------CccchHHHHHhhhHHHHHHHH-HHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchh
Q 043907           57 --------------IK------GGWGWRISLAMAAAPASILTI-GAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVK  115 (330)
Q Consensus        57 --------------~~------~~~~wr~~~~~~~~~~~~~~~-~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~  115 (330)
                                    +.      +..|||+.|.+.+++.++..+ ..+++||+|+... .-+ .++.+...+..+++.. +
T Consensus       141 ~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~-~l~-~~~~~~~~~~~~~~~~-~  217 (412)
T TIGR02332       141 MPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAK-WLD-EEDKKALKEMIDNDQL-T  217 (412)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCC-CCC-HHHHHHHHHHHHhccc-c
Confidence                          11      246999999998877766544 4566899985210 001 1111111111111000 0


Q ss_pred             HHHHHHHHhcccc-ccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhc--CCCCchhhHHHHHHHH
Q 043907          116 AELNDLIRASSTS-KSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTL--KLGESTSLLLSAVVAG  192 (330)
Q Consensus       116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~  192 (330)
                        .++.++..+++ .+.+..++++++     +.++...+..+........+..|.|.++++.  +.+..+.+ .......
T Consensus       218 --~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~-~~~~~~~  289 (412)
T TIGR02332       218 --LEQPEGAFAHAAMPQRSMLREIFT-----PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIG-LLAAIPQ  289 (412)
T ss_pred             --ccccccccccccccHHHHHHHhcC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhH-HHhhHHH
Confidence              00000000000 000112333321     2234444445555566777888999999874  55666677 7788899


Q ss_pred             HHHHHHHHHHHHHHHHhCcchhh-hHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccc
Q 043907          193 GMGTVLAIISMILADKFGRKVLF-LVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAW  271 (330)
Q Consensus       193 ~~~~~~~~~~g~l~d~~grr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (330)
                      ++..++.++.|+++||++||+.. ........+.. .+...           . ...............+.... .+..+
T Consensus       290 l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~-~~~~~-----------~-~~~~~~~~~~~~~~~g~~~~-~~~~~  355 (412)
T TIGR02332       290 FCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGW-LLASA-----------T-DHNLIQLLGIIMASMGSFSA-MAIFW  355 (412)
T ss_pred             HHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHH-HHHHh-----------c-CCHHHHHHHHHHHHHHhhhh-hhHHH
Confidence            99999999999999999977753 33332333222 11111           0 11111111122222122111 22334


Q ss_pred             cccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc-c-hhHHHHHHH
Q 043907          272 LVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK-A-GIFFFFGGL  323 (330)
Q Consensus       272 ~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~-~~~~~~~~~  323 (330)
                      ....|.+|+++|+++.|+.+...+++++++|.+.+.+.|..| + ..+++.+++
T Consensus       356 ~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       356 TTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL  409 (412)
T ss_pred             hhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence            555688999999999999999999999999999999999886 4 455554443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.96  E-value=1.9e-29  Score=199.16  Aligned_cols=315  Identities=21%  Similarity=0.243  Sum_probs=218.9

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhh-------HHHHHHHHHHhhcccccccc------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFN-------IYMLIFGRLLLGVGIGFGNQ------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~r~l~G~~~g~~~~------------------   56 (330)
                      ++.|+++||+|||+++...++++.+++++++++..       ..++...|++.|+|.|+.+|                  
T Consensus       102 l~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~  181 (538)
T KOG0252|consen  102 LFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAF  181 (538)
T ss_pred             HHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccce
Confidence            46899999999999999999999999998877621       37889999999999999999                  


Q ss_pred             -----------------------------ccC-------ccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHH
Q 043907           57 -----------------------------IKG-------GWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQK  100 (330)
Q Consensus        57 -----------------------------~~~-------~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~  100 (330)
                                                   +..       ..-||..+.+++++.+..+...+.+|||++|.....++.+.
T Consensus       182 iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~  261 (538)
T KOG0252|consen  182 IAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQ  261 (538)
T ss_pred             eEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhh
Confidence                                         111       12499999999999999988899999999986433332333


Q ss_pred             HHHHHHHHhcccchhHHHHHHHHhccc-cccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCC
Q 043907          101 AQKMLQRIRGISDVKAELNDLIRASST-SKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLG  179 (330)
Q Consensus       101 a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  179 (330)
                      +.   ++.++..+.+.+.++..+...+ +++....+...+.+.+- +.+......++..-..++....+...+++..|+.
T Consensus       262 a~---~d~~k~~~~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg-~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~  337 (538)
T KOG0252|consen  262 AA---GDMKKVLSVDIEAESTAESDVPPPSNSFGLFSRLFLRWHG-KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVI  337 (538)
T ss_pred             hh---hccccccccccchhhccccCCCCcccccchHHHHHHHHHH-HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccC
Confidence            33   2222221111111111111111 11111112223322222 3455566667766777888888899999988876


Q ss_pred             CchhhH--------HHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHH
Q 043907          180 ESTSLL--------LSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLI  251 (330)
Q Consensus       180 ~~~~~~--------~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (330)
                      +.+...        ....+.....++|..+...++|++|||+..+.+..++.+..+.++....         ........
T Consensus       338 ~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~---------~~~~~~Gf  408 (538)
T KOG0252|consen  338 PSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYN---------QLENTIGF  408 (538)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcc---------cccccCce
Confidence            654431        1122333444456677778899999999999999999988887776420         01233334


Q ss_pred             HHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHh-----hcc-chhHHHHHHHHH
Q 043907          252 LVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLC-----HFK-AGIFFFFGGLVL  325 (330)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~-----~~g-~~~~~~~~~~~~  325 (330)
                      .++..+...+...+.+.....+.+|.+|++.|+++.|+....+-.|+.++...+.++.+     ..+ .+++++++++++
T Consensus       409 ~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~  488 (538)
T KOG0252|consen  409 VVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCML  488 (538)
T ss_pred             eehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHH
Confidence            44444455555667777777888999999999999999999999999999999999998     555 588999999988


Q ss_pred             Hhhc
Q 043907          326 IMTS  329 (330)
Q Consensus       326 ~~~~  329 (330)
                      ++.+
T Consensus       489 ~gi~  492 (538)
T KOG0252|consen  489 LGIL  492 (538)
T ss_pred             HhHh
Confidence            7754

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.96  E-value=2.9e-27  Score=197.91  Aligned_cols=265  Identities=17%  Similarity=0.187  Sum_probs=182.8

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ-------------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~-------------------------   56 (330)
                      ++.|+++||+|||+++..+.++..++.++++++++++.+++.|+++|++.+...+                         
T Consensus        68 ~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  147 (406)
T PRK11551         68 LLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCG  147 (406)
T ss_pred             HHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999887665                         


Q ss_pred             --------------ccCccchHHHHHhhhHHHHHHHH-HHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHH
Q 043907           57 --------------IKGGWGWRISLAMAAAPASILTI-GAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDL  121 (330)
Q Consensus        57 --------------~~~~~~wr~~~~~~~~~~~~~~~-~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  121 (330)
                                    +.+..+||+.|++.++..++..+ ...++||+|++..++++ .++.                    
T Consensus       148 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~--------------------  206 (406)
T PRK11551        148 VPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGA-GKQR--------------------  206 (406)
T ss_pred             HHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCc-chhh--------------------
Confidence                          34557899999887765554443 34568998764322111 0000                    


Q ss_pred             HHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHH
Q 043907          122 IRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAII  201 (330)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  201 (330)
                                +...++.++++..++. .......+......+....+.|.+.++.|+++.+.+ .......++.+++.++
T Consensus       207 ----------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~-~~~~~~~~~~~~~~~~  274 (406)
T PRK11551        207 ----------APVLRALFGEGRATAT-LLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAG-LVQIAFNIGGALGSLL  274 (406)
T ss_pred             ----------hhhHHHHhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhh-HHHHHHHHHHHHHHHH
Confidence                      0001111111111111 111122222223345566788999988899988888 8888889999999999


Q ss_pred             HHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchh
Q 043907          202 SMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLE  281 (330)
Q Consensus       202 ~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  281 (330)
                      .|++.||+|||+.+..+.....++...+...             .+.+.........+.+.. +..+....+..|.+|++
T Consensus       275 ~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~  340 (406)
T PRK11551        275 IGALMDRLRPRRVVLLIYAGILASLAALAAA-------------PSFAGMLLAGFAAGLFVV-GGQSVLYALAPLFYPTQ  340 (406)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc-------------CcHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHcchh
Confidence            9999999999998877655555544433321             222222222232322222 23345556778999999


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907          282 IRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK  313 (330)
Q Consensus       282 ~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g  313 (330)
                      +|+++.|+.+....++..++|.+.+.+.++.+
T Consensus       341 ~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~  372 (406)
T PRK11551        341 VRGTGVGAAVAVGRLGSMAGPLLAGQLLALGR  372 (406)
T ss_pred             hhhhhhhHHHHhhhHHHHHHhhhHhhhhccCC
Confidence            99999999999999999999999999998765

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.96  E-value=3.8e-27  Score=187.29  Aligned_cols=271  Identities=17%  Similarity=0.131  Sum_probs=191.4

Q ss_pred             CcchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc------------------------
Q 043907            1 SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------   56 (330)
Q Consensus         1 ~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------   56 (330)
                      +|+...+.||+.||++++..+.++.++++++++++||+.++++|++.|+..|...+                        
T Consensus        65 ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~  144 (394)
T COG2814          65 APLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFT  144 (394)
T ss_pred             HHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999887                        


Q ss_pred             ---------------ccCccchHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHH
Q 043907           57 ---------------IKGGWGWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELND  120 (330)
Q Consensus        57 ---------------~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  120 (330)
                                     +.+.+|||..|+..+..+++..+. +..+|  |+..  +++                        
T Consensus       145 G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~--~~~------------------------  196 (394)
T COG2814         145 GLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSEI--SGS------------------------  196 (394)
T ss_pred             HHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccC--CCC------------------------
Confidence                           788899999999999888887666 44577  2200  000                        


Q ss_pred             HHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhH-HHHHHhcCCCCchhhHHHHHHHHHHHHHHH
Q 043907          121 LIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYS-PVLFRTLKLGESTSLLLSAVVAGGMGTVLA  199 (330)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  199 (330)
                             .+.+..+..+.++++..+..+.    ..+..+.+.+...+|. |.+.+..|++.+... +....++++..+|+
T Consensus       197 -------~~~~~~~~~~~l~~p~v~~~l~----~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs-~~Ll~~Gv~~~~Gn  264 (394)
T COG2814         197 -------LPGPLRTLLRLLRRPGVLLGLL----ATFLFMTGHFALYTYIRPFLESVAGFSVSAVS-LVLLAFGIAGFIGN  264 (394)
T ss_pred             -------CCcchhHHHHHhcCchHHHHHH----HHHHHHcchhhhHHhHHHHHHHccCCCHhHHH-HHHHHHHHHHHHHH
Confidence                   0000111233344433333332    2333334455555555 445566899999999 99999999999999


Q ss_pred             HHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccc
Q 043907          200 IISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFP  279 (330)
Q Consensus       200 ~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p  279 (330)
                      .++|++.|| +.|+.+.....+..+..+.+.+..            .+.+.......+.+........ ......++ .-
T Consensus       265 ~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~------------~~~~~~~~~~~~wg~a~~~~~~-~~~~~~a~-~~  329 (394)
T COG2814         265 LLGGRLADR-GPRRALIAALLLLALALLALTFTG------------ASPALALALLFLWGFAFSPALQ-GLQTRLAR-LA  329 (394)
T ss_pred             HHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhc------------chHHHHHHHHHHHHHHhhhhhh-HHHHHhcc-cC
Confidence            999999999 888888888788877777766641            3334444444432222221111 11222344 33


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHHHHHHH
Q 043907          280 LEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFGGLVLI  326 (330)
Q Consensus       280 ~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~  326 (330)
                      ++.++.+.+++....+++..++..++|.+.|+.|+ ...++-+...++
T Consensus       330 p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~  377 (394)
T COG2814         330 PDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLL  377 (394)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999884 445554444443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.96  E-value=3.5e-27  Score=198.39  Aligned_cols=295  Identities=14%  Similarity=0.086  Sum_probs=183.4

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ-------------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~-------------------------   56 (330)
                      ++.|+++||+|||+++.++.++.+++.+++++++|++.+.+.|++.|++.|...+                         
T Consensus        76 ~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~  155 (434)
T PRK11663         76 FVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTA  155 (434)
T ss_pred             hhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999998886655                         


Q ss_pred             --------------ccCccchHHHHHhhhHHHHHHH-HHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHH
Q 043907           57 --------------IKGGWGWRISLAMAAAPASILT-IGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDL  121 (330)
Q Consensus        57 --------------~~~~~~wr~~~~~~~~~~~~~~-~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  121 (330)
                                    +.+.+|||+.|.+.++..++.. +..+++||+|++...... .++.++             + ++.
T Consensus       156 ~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~-------------~-~~~  220 (434)
T PRK11663        156 HNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSV-GEWRHD-------------A-LEL  220 (434)
T ss_pred             HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCc-cccccc-------------c-ccc
Confidence                          4456799999998887655543 345567888764211111 000000             0 000


Q ss_pred             HHhccccccCccchHHhccc-ccchhHHHHHHHHHHHHhhhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHHHH
Q 043907          122 IRASSTSKSITQPFKNIIQR-KYRPQPVMAILIPFFQQVTGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTVLA  199 (330)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~  199 (330)
                      .   ++.++++.+.++.+++ ..+++.++......+........+..+.|.++ ++.|++..+.+ ...+...++..++.
T Consensus       221 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~-~~~~~~~~~~~~g~  296 (434)
T PRK11663        221 A---QQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTAN-SAVSMFELGGFIGA  296 (434)
T ss_pred             c---hhccccCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHH-HHHHHHHHHHHHHH
Confidence            0   0000011122222211 11222333333333333344556677888888 56799988888 88888899999999


Q ss_pred             HHHHHHHHHh--Ccchhh-hHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccccccccccccccc
Q 043907          200 IISMILADKF--GRKVLF-LVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSE  276 (330)
Q Consensus       200 ~~~g~l~d~~--grr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  276 (330)
                      ++.|++.||+  ++|+.. ........+....+...           +..+...........+. ...+..........|
T Consensus       297 ~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~  364 (434)
T PRK11663        297 LVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLM-----------PFASYVMQAACFFTIGF-FVFGPQMLIGMAAAE  364 (434)
T ss_pred             HHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHc-----------ccccHHHHHHHHHHHHH-HHhhHHHHHHHHHHh
Confidence            9999999998  333332 22211222121111111           11111111111111111 111111122344579


Q ss_pred             ccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHHHHHHHh
Q 043907          277 IFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFGGLVLIM  327 (330)
Q Consensus       277 ~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~  327 (330)
                      .+|++.|+++.|+.++..+++++++|.+.+.+.|..|+ ..|...+++++++
T Consensus       365 ~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~  416 (434)
T PRK11663        365 CSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGIS  416 (434)
T ss_pred             cccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999885 5666666655543

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.96  E-value=7.8e-27  Score=194.82  Aligned_cols=279  Identities=19%  Similarity=0.204  Sum_probs=183.9

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHH--------HHHHHHHHhhcccccccc-----------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIY--------MLIFGRLLLGVGIGFGNQ-----------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~g~~~~-----------------   56 (330)
                      ++.|+++||+|||+++..+.++..++.+++++++++.        .+++.|+++|++.+...+                 
T Consensus        53 ~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~  132 (394)
T TIGR00883        53 IVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGF  132 (394)
T ss_pred             HHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchH
Confidence            5789999999999999999999999999999998875        488999999999887654                 


Q ss_pred             ----------------------c--------cCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHH
Q 043907           57 ----------------------I--------KGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQ  106 (330)
Q Consensus        57 ----------------------~--------~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~  106 (330)
                                            +        .+.++||+.|.+.++..++........||+|++..++            
T Consensus       133 ~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  200 (394)
T TIGR00883       133 YGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQ------------  200 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHH------------
Confidence                                  0        1357899999887776666555555567765421100            


Q ss_pred             HHhcccchhHHHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHH-HhcCCCCchhhH
Q 043907          107 RIRGISDVKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLF-RTLKLGESTSLL  185 (330)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~  185 (330)
                                         +++++.+.+.++.++++. ++... .....+...........+.|.+. ++.|.++.+.+ 
T Consensus       201 -------------------~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-  258 (394)
T TIGR00883       201 -------------------EKHKKKRGPIRETLTKHR-KPFLL-GLGLVIATTTTFYLITTYLPTYLTQTLGLSANSAL-  258 (394)
T ss_pred             -------------------hccccccCCHHHHHHhch-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHH-
Confidence                               001111233444443322 12222 22233333344556667888888 56788888888 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccc
Q 043907          186 LSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYS  265 (330)
Q Consensus       186 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (330)
                      .......+...++.++.+++.||+|||+.+.....+..+..........         .+.+.+.........+.+.+..
T Consensus       259 ~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~g~~~~~~  329 (394)
T TIGR00883       259 LVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL---------DSGSFTLFFFLVLGLALIGGMY  329 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh---------cCCchHHHHHHHHHHHHHHHHH
Confidence            7888888999999999999999999999877554444333221111110         1122333333333333333333


Q ss_pred             cccccccccccccchhhhhhhhhHHH-HHHHHHHHHHHHhhhhHHhhcc-chhHHHHHHHH
Q 043907          266 WGPLAWLVPSEIFPLEIRSAGQSITV-AVNFVFTFLTAQTFLPMLCHFK-AGIFFFFGGLV  324 (330)
Q Consensus       266 ~~~~~~~~~~e~~p~~~r~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~  324 (330)
                      .. ....++.|.+|++.|+++.++.+ ....+++.++|.+.+.+.++.| +...+...+++
T Consensus       330 ~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~  389 (394)
T TIGR00883       330 TG-PMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAAL  389 (394)
T ss_pred             hh-hHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHH
Confidence            33 44567789999999999999854 4456788899999999999988 54444444433

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.96  E-value=1.1e-26  Score=189.96  Aligned_cols=270  Identities=13%  Similarity=0.076  Sum_probs=166.5

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ-------------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~-------------------------   56 (330)
                      ++.|+++||+|||+++..+......+.+.....+|++++++.|+++|++.+...+                         
T Consensus        44 ~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~  123 (368)
T TIGR00903        44 IPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAM  123 (368)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence            5689999999999987766555555443333337999999999999999986433                         


Q ss_pred             -------------ccCccchHHHHHhhhHHHHHHHH-HHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHHH
Q 043907           57 -------------IKGGWGWRISLAMAAAPASILTI-GAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLI  122 (330)
Q Consensus        57 -------------~~~~~~wr~~~~~~~~~~~~~~~-~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  122 (330)
                                   +.+.+|||+.|++.++++++..+ ..+++||+|++..  ++ .+.                  ++. 
T Consensus       124 ~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~--~~-~~~------------------~~~-  181 (368)
T TIGR00903       124 YLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPFQAA--EG-FGF------------------KDA-  181 (368)
T ss_pred             HHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC--CC-cch------------------HHH-
Confidence                         55568999999997776655444 4566899986421  00 000                  000 


Q ss_pred             HhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHH
Q 043907          123 RASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIIS  202 (330)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  202 (330)
                               .++++++++++.    ++...+..+......+.+..|.|.++++.|++.. .+ .......+...++   .
T Consensus       182 ---------~~~~~~ll~~~~----~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~-~~~~l~~~~g~~g---~  243 (368)
T TIGR00903       182 ---------VKEFGALAGRKD----LWIIGAILGFGVALFDNLAIWLEAALRPAGLEDI-AG-DAVALAILAGLIG---V  243 (368)
T ss_pred             ---------HHHHHHHHcChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-HH-HHHHHHHHHHHHH---H
Confidence                     012455555432    3344444555556677888999999988887754 44 4444444444444   4


Q ss_pred             HHHHHHhCcc---hhhhH-hhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccccccccccccccccc
Q 043907          203 MILADKFGRK---VLFLV-GGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIF  278 (330)
Q Consensus       203 g~l~d~~grr---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  278 (330)
                      ++++||..||   +.... .....++....+...             .+......+..+...+.. ...+..+.+.+|.+
T Consensus       244 ~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~-------------~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~  309 (368)
T TIGR00903       244 AVIPDRVARAGLRSIYIRAAALLIAAFFLALAFE-------------LNRLALFAFIGIAGLLML-PAYAIIMDWIGKFC  309 (368)
T ss_pred             HHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHc-------------cccHHHHHHHHHHHHhhh-hhHHHHHHHHHHhc
Confidence            7778877543   33222 222222222222211             112222222222222222 22234567778999


Q ss_pred             chhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc-chhHHHHHHHHHHh
Q 043907          279 PLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK-AGIFFFFGGLVLIM  327 (330)
Q Consensus       279 p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~  327 (330)
                      |++.|+++.|+.+..+++++..+|.+.+.+..  + ...|.++++..+++
T Consensus       310 p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~  357 (368)
T TIGR00903       310 DKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIA  357 (368)
T ss_pred             chhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988774  4 45566666555544

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK15075 citrate-proton symporter; Provisional

Probab=99.95  E-value=6.7e-27  Score=196.77  Aligned_cols=267  Identities=18%  Similarity=0.266  Sum_probs=166.8

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHH--------HHHHHHHHhhcccccccc-----------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIY--------MLIFGRLLLGVGIGFGNQ-----------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~g~~~~-----------------   56 (330)
                      ++.|+++||+|||++++.+.+++++++++++++++++        .++++|+++|++.|...+                 
T Consensus        74 ~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~  153 (434)
T PRK15075         74 IVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGF  153 (434)
T ss_pred             HHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchH
Confidence            4679999999999999999999999999999999987        468999999999987654                 


Q ss_pred             ----------------------c--------cCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHH
Q 043907           57 ----------------------I--------KGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQ  106 (330)
Q Consensus        57 ----------------------~--------~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~  106 (330)
                                            +        .+.+|||++|++..+...+........||++++..++            
T Consensus       154 ~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~------------  221 (434)
T PRK15075        154 YTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARK------------  221 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhh------------
Confidence                                  1        2457999999876544322222222233332110000            


Q ss_pred             HHhcccchhHHHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHh-cCCCCchhhH
Q 043907          107 RIRGISDVKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRT-LKLGESTSLL  185 (330)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~  185 (330)
                                          ++.+.+..+++..++  + +.........+.....++....|.|.++++ .|++..+.. 
T Consensus       222 --------------------~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~-  277 (434)
T PRK15075        222 --------------------HRPSMREIFRSLAAN--W-RIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSL-  277 (434)
T ss_pred             --------------------hccccccHHHHHHHh--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-
Confidence                                000001112221111  1 222222222223344566778889998875 799888877 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccc
Q 043907          186 LSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYS  265 (330)
Q Consensus       186 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (330)
                      .......++.+++.++.|+++||+|||+.+..+.....+......... .        +................+.+ .
T Consensus       278 ~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~g-~  347 (434)
T PRK15075        278 LVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWL-V--------AAPSFARMLAVELWLSFLYG-S  347 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH-H--------cCCchHHHHHHHHHHHHHHH-H
Confidence            777888889999999999999999999987765444332211111110 0        01111111111111122222 2


Q ss_pred             cccccccccccccchhhhhhhhhHHHHHHHH-HHHHHHHhhhhHHhhccc
Q 043907          266 WGPLAWLVPSEIFPLEIRSAGQSITVAVNFV-FTFLTAQTFLPMLCHFKA  314 (330)
Q Consensus       266 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~g~  314 (330)
                      ..+..+.+..|.+|++.|+++.++.+..... ++.++|.+.+.+.|..|+
T Consensus       348 ~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~  397 (434)
T PRK15075        348 YNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGD  397 (434)
T ss_pred             HHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence            2233345668999999999999997666555 588899999999998873

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.95  E-value=3.6e-26  Score=196.77  Aligned_cols=288  Identities=18%  Similarity=0.183  Sum_probs=201.0

Q ss_pred             CcchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc------------------------
Q 043907            1 SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------   56 (330)
Q Consensus         1 ~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------   56 (330)
                      ++++|+++||+|||++++.++++..++.+..++++|++.+++.|+++|++.++...                        
T Consensus       135 ~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~~~~  214 (521)
T KOG0255|consen  135 SLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTLGGF  214 (521)
T ss_pred             HhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHHHHH
Confidence            36789999999999999999999999999999999999999999999999998876                        


Q ss_pred             --------------ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhccc----chhHHH
Q 043907           57 --------------IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGIS----DVKAEL  118 (330)
Q Consensus        57 --------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~  118 (330)
                                    +..  +||+.+++..++.++.++..++.||||||+..+++ .+++.+.+++..+.|    +.++..
T Consensus       215 ~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~-~~~a~~~l~~~a~~n~~~~~~~~~~  291 (521)
T KOG0255|consen  215 FFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGR-IDEAIKILKKIAKLNGRKLSVKELL  291 (521)
T ss_pred             HHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCc-hHHHHHHHHHHHhhcCCCCCcHHHH
Confidence                          222  79999999999988877776667799999999999 999999888875432    111111


Q ss_pred             HHH---HHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHH
Q 043907          119 NDL---IRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMG  195 (330)
Q Consensus       119 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  195 (330)
                      ++.   +.......+.+..+.++++.+..++......+..+.....++....    ...  +++.+..  ......+...
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~----~~~--~lg~~~~--~~~~~~~~~~  363 (521)
T KOG0255|consen  292 RLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSL----NVS--GLGGNIY--LNFTLSGLVE  363 (521)
T ss_pred             HHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhh----hhh--hcCchHH--HHHHHHHHHH
Confidence            111   1111111112345777776553333333233333221111121111    112  2333322  3455556688


Q ss_pred             HHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccc
Q 043907          196 TVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPS  275 (330)
Q Consensus       196 ~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (330)
                      ..+....+...|+.|||.....+.....++++..++...          ....+...+...+...+.+.++... +.+.+
T Consensus       364 ~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  432 (521)
T KOG0255|consen  364 LPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPD----------DLGGWLHWILPLLGKFFIGSAFNLI-FLYSA  432 (521)
T ss_pred             hhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhc----------cchhHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence            888888899999999999999999999999988887631          1111233333333344444455544 77789


Q ss_pred             cccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHh
Q 043907          276 EIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLC  310 (330)
Q Consensus       276 e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~  310 (330)
                      |.+|+..|..+.+..+....+++.++|.+......
T Consensus       433 el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~  467 (521)
T KOG0255|consen  433 ELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ  467 (521)
T ss_pred             hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999988865544

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.95  E-value=1.1e-26  Score=182.49  Aligned_cols=297  Identities=12%  Similarity=0.112  Sum_probs=206.3

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ-------------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~-------------------------   56 (330)
                      ++.|.++||.++|+.+.+++++.++.+++++++++...+.+..+++|...|.-.|                         
T Consensus        82 f~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~s  161 (448)
T COG2271          82 FVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTS  161 (448)
T ss_pred             HHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhh
Confidence            3679999999999999999999999999999999999999999999999988877                         


Q ss_pred             ----------------ccCccchHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHH
Q 043907           57 ----------------IKGGWGWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELN  119 (330)
Q Consensus        57 ----------------~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  119 (330)
                                      +..+.+||..|++.++.+++..+. .+..+|+|+-.   +-      ...++.+++      ..
T Consensus       162 hNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~---GL------P~ie~~~~d------~~  226 (448)
T COG2271         162 HNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSE---GL------PPIEEYRGD------PL  226 (448)
T ss_pred             hhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcccc---CC------CCHHHhhcC------ch
Confidence                            234559999999999887776554 55688888521   11      000111100      00


Q ss_pred             HHHHhccccccCccchHHhc-ccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHH
Q 043907          120 DLIRASSTSKSITQPFKNII-QRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTV  197 (330)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~  197 (330)
                      |..  .++++.+..+.++++ +.-.+++.++...+........-+.+..|.|.++ |..|++..++. ...+.+-.++++
T Consensus       227 e~~--~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~-~a~~lfE~agl~  303 (448)
T COG2271         227 EIY--EEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKAN-WAISLFEVAGLP  303 (448)
T ss_pred             hhh--hhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHH-HHHHHHHHHhhH
Confidence            000  111111113444444 3446667788888888877788899999999998 45799999999 999999999999


Q ss_pred             HHHHHHHHHHHh--CcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccc
Q 043907          198 LAIISMILADKF--GRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPS  275 (330)
Q Consensus       198 ~~~~~g~l~d~~--grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (330)
                      |+++.|+++||+  |||.+..+...+.....+...+..          ++.+.+...++....+.. -.+..-+.-....
T Consensus       304 G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~----------~~~~~~l~~~~l~~iGf~-IyGPqmLiGl~a~  372 (448)
T COG2271         304 GTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLA----------PNGSYLLDAILLFIIGFL-IYGPQMLIGLAAA  372 (448)
T ss_pred             HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcC----------CCccHHHHHHHHHHHHHH-HhhHHHHHHHHHh
Confidence            999999999996  677655443333333333322221          223233333333333222 2222223345557


Q ss_pred             cccchhhhhhhhhHHHHHHHH-HHHHHHHhhhhHHhhccc-hhHHHHHHHHHHh
Q 043907          276 EIFPLEIRSAGQSITVAVNFV-FTFLTAQTFLPMLCHFKA-GIFFFFGGLVLIM  327 (330)
Q Consensus       276 e~~p~~~r~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~  327 (330)
                      |..|++..|++.|+...++++ |...+....+.+.|.+|| +.|.++.+.++++
T Consensus       373 e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~  426 (448)
T COG2271         373 EFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLA  426 (448)
T ss_pred             ccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHH
Confidence            999999999999999999999 888889999999999886 5665555555444

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.95  E-value=1.7e-26  Score=193.04  Aligned_cols=301  Identities=16%  Similarity=0.174  Sum_probs=189.4

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ-------------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~-------------------------   56 (330)
                      ++.|+++||+|||+++..+.++.+++.+++++++|++.+++.|+++|++.+...+                         
T Consensus        47 ~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  126 (399)
T TIGR00893        47 FPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSA  126 (399)
T ss_pred             HhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            5789999999999999999999999999999999999999999999999887765                         


Q ss_pred             --------------ccCccchHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHH
Q 043907           57 --------------IKGGWGWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDL  121 (330)
Q Consensus        57 --------------~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  121 (330)
                                    +.+..+||+.|.+.++..++..+. .+..||+|+... +.+ +++..+..++.         .++ 
T Consensus       127 ~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~---------~~~-  194 (399)
T TIGR00893       127 QGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAK-WLT-EEEKYIVVGGL---------LAE-  194 (399)
T ss_pred             chHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCCccc-cCC-HHHHhhcchhh---------ccc-
Confidence                          345578999999888776665544 344677654110 001 11100000000         000 


Q ss_pred             HHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCchhhHHHHHHHHHHHHHHHH
Q 043907          122 IRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSAVVAGGMGTVLAI  200 (330)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~  200 (330)
                      .++.+++++.+.+.++.+++    +.+....+..+...........+.|.+.+ ..|.++.+.+ .......+...++.+
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  269 (399)
T TIGR00893       195 QQGKGPSTPKKYQIKELLKD----RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAG-FMASLPGIVGFIGMI  269 (399)
T ss_pred             cccccccCCCccchHHHhcC----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhh-HHHHHHHHHHHHHHH
Confidence            00011111122334444433    22333333344444555667777888775 5688888888 888888999999999


Q ss_pred             HHHHHHHHhCcchhhhH-hhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccc
Q 043907          201 ISMILADKFGRKVLFLV-GGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFP  279 (330)
Q Consensus       201 ~~g~l~d~~grr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p  279 (330)
                      +.+++.||++||+.... ......++.+........ . .    .....+........ . +...+..+....+..|..|
T Consensus       270 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~----~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~  341 (399)
T TIGR00893       270 LGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFA-T-N----YVNIPYAALALVAL-G-FFGLGAGAIGWALISDNAP  341 (399)
T ss_pred             HHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHH-h-c----cchhHHHHHHHHHH-H-HhchhhhhHHHHHHHhhcC
Confidence            99999999999962111 111111111111111000 0 0    01122222222222 2 2222345666778899999


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc-c-hhHHHHHHHHHHh
Q 043907          280 LEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK-A-GIFFFFGGLVLIM  327 (330)
Q Consensus       280 ~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~-~~~~~~~~~~~~~  327 (330)
                      +++|+++.|+.+....+++.++|.+.+.+.|..| + ..+++.+++++++
T Consensus       342 ~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~  391 (399)
T TIGR00893       342 GNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIG  391 (399)
T ss_pred             hhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999887 5 4555555554443

>TIGR00895 2A0115 benzoate transport

Probab=99.95  E-value=3.9e-26  Score=190.87  Aligned_cols=288  Identities=20%  Similarity=0.240  Sum_probs=186.0

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ-------------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~-------------------------   56 (330)
                      ++.|+++||+|||+.+..+.++..++.++..++++++.+++.|++.|++.+...+                         
T Consensus        70 ~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  149 (398)
T TIGR00895        70 LFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCG  149 (398)
T ss_pred             HHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhH
Confidence            5789999999999999999999999999999999999999999999999987765                         


Q ss_pred             --------------ccCccchHHHHHhhhHHHHH-HHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHH
Q 043907           57 --------------IKGGWGWRISLAMAAAPASI-LTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDL  121 (330)
Q Consensus        57 --------------~~~~~~wr~~~~~~~~~~~~-~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  121 (330)
                                    +.+..+||+.+++.++..++ ..+...++||+|++..++ + .++..+..++.......+.+ ++.
T Consensus       150 ~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~-~~~  226 (398)
T TIGR00895       150 YPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-R-PETVRRIVNAIAPQMQAEAQ-SAL  226 (398)
T ss_pred             HHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-C-HHHHHHHHHHHHHhcccccc-ccc
Confidence                          44567899999887644444 444456689988765443 2 33333322222211100000 000


Q ss_pred             HHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHH
Q 043907          122 IRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAII  201 (330)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  201 (330)
                      .++.+++++.+...+..++++..++.. ...+..+...........+.|.+.++.|.++.+.+ .......++.+++.++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~  304 (398)
T TIGR00895       227 PEQKATQGTKRSVFKALFQGKTARITV-LLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAA-TGGALFNFGGVIGSII  304 (398)
T ss_pred             cccccccchhhHHHHHHhcchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHH
Confidence            000000011111222233332222222 22333333444556667788877788899988888 8888899999999999


Q ss_pred             HHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchh
Q 043907          202 SMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLE  281 (330)
Q Consensus       202 ~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  281 (330)
                      .+++.||++||+... ......+....+....            .+.+......++.+.+.+.. .+....++.|.+|++
T Consensus       305 ~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~  370 (398)
T TIGR00895       305 FGWLADRLGPRVTAL-LLLLGAVFAVLVGSTL------------FSPTLLLLLGAIAGFFVNGG-QSGLYALMALFYPTA  370 (398)
T ss_pred             HHHHHhhcchHHHHH-HHHHHHHHHHHHHHHh------------hCHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCHH
Confidence            999999999994443 3333333333322211            22233333444444444433 334566778999999


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHhhhhH
Q 043907          282 IRSAGQSITVAVNFVFTFLTAQTFLPM  308 (330)
Q Consensus       282 ~r~~~~g~~~~~~~~~~~~~~~~~~~~  308 (330)
                      +|+++.|+.+....++..++|.+.|.+
T Consensus       371 ~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       371 IRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            999999999999999999999998865

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.95  E-value=1.4e-25  Score=186.30  Aligned_cols=267  Identities=15%  Similarity=0.088  Sum_probs=177.7

Q ss_pred             CcchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc------------------------
Q 043907            1 SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------   56 (330)
Q Consensus         1 ~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------   56 (330)
                      +++.|+++||+|||+++..+..+++++.+.+++++|++.++++|+++|++.+...+                        
T Consensus        61 ~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  140 (393)
T PRK09705         61 ALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQRTPLVMGLWSAA  140 (393)
T ss_pred             hhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHccccchhHHHHHHHH
Confidence            36789999999999999999999999999999999999999999999999998766                        


Q ss_pred             --------------ccCc-cchHHHHHhhhHHHHHHHHHHhhc-CCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHH
Q 043907           57 --------------IKGG-WGWRISLAMAAAPASILTIGAIFL-PETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELND  120 (330)
Q Consensus        57 --------------~~~~-~~wr~~~~~~~~~~~~~~~~~~~~-pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  120 (330)
                                    +.+. .+||+.+.+.++..++.....+.. ++.|+      +  +                     
T Consensus       141 ~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--~---------------------  191 (393)
T PRK09705        141 LMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAREVA------S--S---------------------  191 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCCc------c--c---------------------
Confidence                          2333 379987766555444333322222 11110      0  0                     


Q ss_pred             HHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHH
Q 043907          121 LIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAI  200 (330)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  200 (330)
                           +++   +.+.++.++++   +. +...+.......++.....+.|.++++.|.+..+.+ ...++..++.+++++
T Consensus       192 -----~~~---~~~~~~~l~~~---~~-~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag-~~~~~~~i~~i~g~~  258 (393)
T PRK09705        192 -----HKT---TTTPVRVVFTP---RA-WTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSG-SLLALMTLGQAAGAL  258 (393)
T ss_pred             -----cCC---CcCCcccccCH---hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhh-HHHHHHHHHHHHHHH
Confidence                 000   00111122221   11 222222333334556777888988888899988888 888999999999999


Q ss_pred             HHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccccccccccccccccc-c
Q 043907          201 ISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIF-P  279 (330)
Q Consensus       201 ~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p  279 (330)
                      +.+++.||.+||+....+..+..++...+...           +... .....  .+.+.+.+... +.......+.. |
T Consensus       259 ~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~-----------~~~~-~~~~~--~l~g~g~g~~~-~~~~~~~~~~~~~  323 (393)
T PRK09705        259 LMPAMARHQDRRKLLMLALVLQLVGFCGFIWL-----------PLQL-PVLWA--MVCGLGLGGAF-PLCLLLALDHSVQ  323 (393)
T ss_pred             HHHHHHhhccchHHHHHHHHHHHHHHHHHHHc-----------cchH-HHHHH--HHHHHhccchH-HHHHHHHHhhcCC
Confidence            99999999999998888776666655544322           1111 11111  22223333222 23333334555 5


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc-ch-hHHHHHHHH
Q 043907          280 LEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK-AG-IFFFFGGLV  324 (330)
Q Consensus       280 ~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~-~~~~~~~~~  324 (330)
                      +++|++..|+.+...++++.++|.+.+++.|..| +. .+.+.++++
T Consensus       324 ~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~  370 (393)
T PRK09705        324 PAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCV  370 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence            7889999999999999999999999999999987 43 344433333

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.95  E-value=8.5e-26  Score=191.77  Aligned_cols=296  Identities=9%  Similarity=-0.054  Sum_probs=179.7

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHhhcccccccc--------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGS-----AFNIYMLIFGRLLLGVGIGFGNQ--------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~r~l~G~~~g~~~~--------------------   56 (330)
                      ++.|+++||+|||+++..+.+++++..+..+.     ++|++.+++.|+++|++.+...+                    
T Consensus        82 ~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~g  161 (467)
T PRK09556         82 TLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLG  161 (467)
T ss_pred             hhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEE
Confidence            57899999999999999988888877776654     58999999999999999887765                    


Q ss_pred             -------------------ccCc---cchHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHHHHHhcccc
Q 043907           57 -------------------IKGG---WGWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKMLQRIRGISD  113 (330)
Q Consensus        57 -------------------~~~~---~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~  113 (330)
                                         ....   .+||..|.+.+++.++..+. .++.+|+|+..... + .++   .   .. +. 
T Consensus       162 i~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~-~-~~~---~---~~-~~-  231 (467)
T PRK09556        162 FWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWG-K-AEE---I---FG-EP-  231 (467)
T ss_pred             eeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCC-C-hhh---c---cc-Cc-
Confidence                               1111   25888888877666655444 44467776421100 1 111   0   00 00 


Q ss_pred             hhHHHHHHHHhccccccCccchHHhccc-ccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCchhhHHHHHHH
Q 043907          114 VKAELNDLIRASSTSKSITQPFKNIIQR-KYRPQPVMAILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSAVVA  191 (330)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~  191 (330)
                      .+++  +  +  +.++ ++.+.++.+++ ..+++.++...+..+...........|.|.+++ +.|++..+.+ ......
T Consensus       232 ~~~~--~--~--~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~-~~~~~~  303 (467)
T PRK09556        232 ISEE--D--K--ETES-TDMTKWQIFVEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAI-NTFTLF  303 (467)
T ss_pred             cchh--h--h--cccc-ccCcHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHH-HHHHHH
Confidence            0000  0  0  0000 01111121111 122233444444444444555667788998885 5799998888 788888


Q ss_pred             HHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccc
Q 043907          192 GGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAW  271 (330)
Q Consensus       192 ~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (330)
                      .++..++.++.|+++||++||+..........+....+...           ...+.....+..+..+... .+......
T Consensus       304 ~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~G~~~-~~~~~~~~  371 (467)
T PRK09556        304 EIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQ-----------HATSEYMYLASLFALGFLV-FGPQLLIG  371 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHH-----------hcCcHHHHHHHHHHHHHHH-hhHHHHHH
Confidence            89999999999999999999987665443333322221111           0112222222222222211 11111212


Q ss_pred             cccccccchhhhhhhhhHHHHHHHH-HHHHHHHhhhhHHh------------hccc-hhHHHHHHHHHHh
Q 043907          272 LVPSEIFPLEIRSAGQSITVAVNFV-FTFLTAQTFLPMLC------------HFKA-GIFFFFGGLVLIM  327 (330)
Q Consensus       272 ~~~~e~~p~~~r~~~~g~~~~~~~~-~~~~~~~~~~~~~~------------~~g~-~~~~~~~~~~~~~  327 (330)
                      ....|.+|++.||++.|+.+..+++ +++++|.+.|.+.|            ..+| ..|++.+++.+++
T Consensus       372 ~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~  441 (467)
T PRK09556        372 VAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGC  441 (467)
T ss_pred             HHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHH
Confidence            3446999999999999999999997 66999999999999            4454 4555555555443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.95  E-value=1.2e-25  Score=190.07  Aligned_cols=296  Identities=15%  Similarity=0.052  Sum_probs=178.4

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHhhcccccccc---------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAF----NIYMLIFGRLLLGVGIGFGNQ---------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~r~l~G~~~g~~~~---------------------   56 (330)
                      ++.|+++||+|||+++..+.++.+++.+.+++++    +++.+++.|++.|++.|...+                     
T Consensus        81 ~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~  160 (452)
T PRK11273         81 FIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSV  160 (452)
T ss_pred             hhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHH
Confidence            6789999999999999999999999999888763    688899999999998887655                     


Q ss_pred             -------------------ccCccchHHHHHhhhHHHHHH-HHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhH
Q 043907           57 -------------------IKGGWGWRISLAMAAAPASIL-TIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKA  116 (330)
Q Consensus        57 -------------------~~~~~~wr~~~~~~~~~~~~~-~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~  116 (330)
                                         .....+||+.|++.+++.++. .+..+++||+|+....+ + .++.++       +.  ++
T Consensus       161 ~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~-~-~~~~~~-------~~--~~  229 (452)
T PRK11273        161 WNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLP-P-IEEYKN-------DY--PD  229 (452)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCC-C-hhhhhh-------cc--cc
Confidence                               112348999999887766654 34456688887532111 1 111000       00  00


Q ss_pred             HHHHHHHhccccccCccchHHhccc-ccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHh-cCCCCchhhHHHHHHHHHH
Q 043907          117 ELNDLIRASSTSKSITQPFKNIIQR-KYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRT-LKLGESTSLLLSAVVAGGM  194 (330)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~  194 (330)
                         +.    +++++++.+.++.+++ ..+++.++...+..+......+....+.|.++++ .|++..+.+ .......++
T Consensus       230 ---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~-~~~~~~~~~  301 (452)
T PRK11273        230 ---DY----NEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSS-WAYFLYEYA  301 (452)
T ss_pred             ---cc----ccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHH
Confidence               00    0000011122222111 1112333333333333333445667789999865 688888877 777788889


Q ss_pred             HHHHHHHHHHHHHHh--CcchhhhH-hhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccc
Q 043907          195 GTVLAIISMILADKF--GRKVLFLV-GGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAW  271 (330)
Q Consensus       195 ~~~~~~~~g~l~d~~--grr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (330)
                      .+++.++.|+++||+  +||..... ...+..++...+...           +..+.+.........+.... +......
T Consensus       302 ~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~-----------~~~~~~~~~~~~~~~g~~~~-~~~~~~~  369 (452)
T PRK11273        302 GIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLN-----------PAGNPTVDMACMIVIGFLIY-GPVMLIG  369 (452)
T ss_pred             HHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHh-----------cccChHHHHHHHHHHHHHHH-hHHHHHH
Confidence            999999999999999  44543222 222222222222111           11122222222222222111 1111223


Q ss_pred             cccccccchhhhhhhhhHHHHHHHHHHHH-HHHhhhhHHhhccc-hhHHHHHHHHHHhh
Q 043907          272 LVPSEIFPLEIRSAGQSITVAVNFVFTFL-TAQTFLPMLCHFKA-GIFFFFGGLVLIMT  328 (330)
Q Consensus       272 ~~~~e~~p~~~r~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~g~-~~~~~~~~~~~~~~  328 (330)
                      .+..|.+|++.||++.|+.+...++++.+ +|.+.+.+.|+.|+ ..|++.+++++++.
T Consensus       370 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~  428 (452)
T PRK11273        370 LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAV  428 (452)
T ss_pred             HHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            34569999999999999999988888765 79999999999884 66666666555543

>PRK03545 putative arabinose transporter; Provisional

Probab=99.94  E-value=2.2e-25  Score=185.31  Aligned_cols=269  Identities=16%  Similarity=0.146  Sum_probs=177.8

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ-------------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~-------------------------   56 (330)
                      ++.|+++||+|||+++..+.++..++++.+++++|++++++.|+++|++.+...+                         
T Consensus        62 ~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~  141 (390)
T PRK03545         62 LPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATG  141 (390)
T ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHH
Confidence            5689999999999999999999999999999999999999999999999876554                         


Q ss_pred             --------------ccCccchHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHH
Q 043907           57 --------------IKGGWGWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDL  121 (330)
Q Consensus        57 --------------~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  121 (330)
                                    +.+..|||+.|++.++.+++..+. ...+||.|+    +++  ++                     
T Consensus       142 ~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~----~~~--~~---------------------  194 (390)
T PRK03545        142 TALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPS----EHS--GS---------------------  194 (390)
T ss_pred             HHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCC----CCc--ch---------------------
Confidence                          445679999999988776665444 344666542    000  00                     


Q ss_pred             HHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCchhhHHHHHHHHHHHHHHHH
Q 043907          122 IRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSAVVAGGMGTVLAI  200 (330)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~  200 (330)
                                .++.++.++++..+........    ..........+.+.+.+ ..|.+..+.+ .......++.+++.+
T Consensus       195 ----------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~g~s~~~~~-~~~~~~~~~~~~g~~  259 (390)
T PRK03545        195 ----------LKSLPLLFRRPALVSLYLLTVV----VVTAHFTAYSYIEPFVQQVAGLSENFAT-LLLLLFGGAGIIGSV  259 (390)
T ss_pred             ----------HHHHHHHHhCcHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcCCCccHHH-HHHHHHHHHHHHHHH
Confidence                      0112334433322222221111    11222333445555554 4688888888 788888899999999


Q ss_pred             HHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccch
Q 043907          201 ISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPL  280 (330)
Q Consensus       201 ~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~  280 (330)
                      +.+++.||++||... .+..+..++...+...           . ++.+....+..+.+.+.. ...+.....+.|..| 
T Consensus       260 ~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~-----------~-~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~-  324 (390)
T PRK03545        260 LFSRLGNRHPSGFLL-IAIALLLVCLLLLLPA-----------A-NSEWHLSVLSIFWGIAIM-CIGLAMQVKVLKLAP-  324 (390)
T ss_pred             HHHHHhhccchhHHH-HHHHHHHHHHHHHHHH-----------h-chHHHHHHHHHHHHHHHh-cchHHHHHHHHHhCC-
Confidence            999999999988654 3444443333332221           1 222333333333333322 222333344557766 


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHHHHHHHh
Q 043907          281 EIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFGGLVLIM  327 (330)
Q Consensus       281 ~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~  327 (330)
                      +.|+++.|+.+...+++..++|.+.|.+.|+.|. ..++..+.+.+++
T Consensus       325 ~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~  372 (390)
T PRK03545        325 DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAA  372 (390)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999984 5666665555544

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.94  E-value=3e-25  Score=190.53  Aligned_cols=306  Identities=14%  Similarity=0.122  Sum_probs=185.2

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ-------------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~-------------------------   56 (330)
                      ++.|+++||+|||+.+..+.++.+++.++.++++|++.+++.|++.|++.+...+                         
T Consensus        73 ~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  152 (496)
T PRK03893         73 LLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISG  152 (496)
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence            5689999999999999999999999999999999999999999999999886554                         


Q ss_pred             --------------ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHH-
Q 043907           57 --------------IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDL-  121 (330)
Q Consensus        57 --------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-  121 (330)
                                    +.+..+||+.|++..+..++.++.....||++++..++++ .++.++..+.....+......... 
T Consensus       153 ~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  231 (496)
T PRK03893        153 FSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAG-KAPVRTMVDILYRGEHRIINILLTL  231 (496)
T ss_pred             HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccc-cccchhHHHHHhcchhHHHHHHHHH
Confidence                          4556899999988666555554455567887764322211 111111111100000000000000 


Q ss_pred             -H--H-hccccccCccch-------------HH--hcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCc
Q 043907          122 -I--R-ASSTSKSITQPF-------------KN--IIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFR-TLKLGES  181 (330)
Q Consensus       122 -~--~-~~~~~~~~~~~~-------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~  181 (330)
                       .  . ...........+             ..  ...+..+++.........+...........+.|.+++ +.|++..
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~  311 (496)
T PRK03893        232 AAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPH  311 (496)
T ss_pred             HHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHH
Confidence             0  0 000000000000             00  0001111122222222222222222235567888884 7899998


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcc
Q 043907          182 TSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSG  261 (330)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (330)
                      +.+ ...+...++.+++.++.|++.||+|||+.+..+..+..+..+.+...           .....+........ ..+
T Consensus       312 ~~g-~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~-~~~  378 (496)
T PRK03893        312 TVA-NVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAI-----------GGANVWVLGLLLFF-QQM  378 (496)
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc-----------cccHHHHHHHHHHH-HHH
Confidence            888 88899999999999999999999999998877665555444332221           11222222121111 111


Q ss_pred             cccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHH
Q 043907          262 YCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFG  321 (330)
Q Consensus       262 ~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~  321 (330)
                      .+.+..+....++.|.+|++.|++++|+.+....+++.++|.+.+.+.|..|+ ..+...+
T Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~  439 (496)
T PRK03893        379 LGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLS  439 (496)
T ss_pred             HhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHH
Confidence            22222334445668999999999999999999999999999999999999884 3443333

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.94  E-value=1.5e-25  Score=191.32  Aligned_cols=291  Identities=13%  Similarity=0.036  Sum_probs=188.6

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ-------------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~-------------------------   56 (330)
                      +++|+++||+|||+++..+..+..++++.+++++|++.++++|+++|++.+...+                         
T Consensus        59 ~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~  138 (495)
T PRK14995         59 LPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAA  138 (495)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            5689999999999999999999999999999999999999999999999887654                         


Q ss_pred             ---------------ccCccchHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHHH---------HHhc-
Q 043907           57 ---------------IKGGWGWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKMLQ---------RIRG-  110 (330)
Q Consensus        57 ---------------~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~~---------~~~~-  110 (330)
                                     +.+..+|||.|++....+++..+. .+++||+|+..  +++ .|.......         .+.. 
T Consensus       139 ~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~--~~~-~d~~g~~~~~~~~~~l~~~~~~~  215 (495)
T PRK14995        139 VGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRR--DQP-LNLGHALMLIVAILLLVYSAKTA  215 (495)
T ss_pred             HHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--CCC-CChHhHHHHHHHHHHHHHHHHhc
Confidence                           556689999999987766665444 45578765421  111 111111000         0000 


Q ss_pred             -ccc-hhHH-HHH-------HHHhccccccCccch--HHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHh-cC
Q 043907          111 -ISD-VKAE-LND-------LIRASSTSKSITQPF--KNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRT-LK  177 (330)
Q Consensus       111 -~~~-~~~~-~~~-------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g  177 (330)
                       .+. .... ...       .......|.+.+.+.  .++++++..    ....+..+...........+.|.+++. .|
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g  291 (495)
T PRK14995        216 LKGFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHRII----LSGVVMAMTAMITLVGFELLMAQELQFVHG  291 (495)
T ss_pred             cccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCccc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence             000 0000 000       000000011111121  234443322    222233333333445556678888765 69


Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHH
Q 043907          178 LGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCL  257 (330)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (330)
                      +++.+++ ....+..+...++.++.|++.||+|+|+.+..+..+..++...+....          ...+.+.......+
T Consensus       292 ~s~~~ag-~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~----------~~~~~~~~~~~~~l  360 (495)
T PRK14995        292 LSPLEAG-MFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTD----------FSTQQWQAWGLMAL  360 (495)
T ss_pred             CCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhc----------CCCchHHHHHHHHH
Confidence            9999999 888999999999999999999999999988877777766655544321          11222333334445


Q ss_pred             hhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhh
Q 043907          258 CSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCH  311 (330)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~  311 (330)
                      .+.+.+....+. .....+..|+++++.+.++.++...+|+.+++.+.+.+.++
T Consensus       361 ~G~g~g~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~  413 (495)
T PRK14995        361 LGFSAASALLAS-TSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR  413 (495)
T ss_pred             HHHhHHHHHHHH-HHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555444433 33446788999999999999999999999999999888653

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.94  E-value=2.2e-25  Score=185.07  Aligned_cols=288  Identities=13%  Similarity=0.088  Sum_probs=176.8

Q ss_pred             CcchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc------------------------
Q 043907            1 SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------   56 (330)
Q Consensus         1 ~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------   56 (330)
                      +++.|+++||+|||+++..+.++..++.++.+++++++.+++.|++.|++.+...+                        
T Consensus        47 ~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  126 (379)
T TIGR00881        47 KFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNC  126 (379)
T ss_pred             hhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhc
Confidence            36789999999999999999999999999999999999999999999999988766                        


Q ss_pred             ----------------ccCccchHHHHHhhhHHHHHHH-HHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHH
Q 043907           57 ----------------IKGGWGWRISLAMAAAPASILT-IGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELN  119 (330)
Q Consensus        57 ----------------~~~~~~wr~~~~~~~~~~~~~~-~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  119 (330)
                                      +.+..+||+.|++.++..++.. +..++.||+|+....+++ +++.          ++ +.+. 
T Consensus       127 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----------~~-~~~~-  193 (379)
T TIGR00881       127 SHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPA-EEMP----------NE-EPDG-  193 (379)
T ss_pred             cchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCccccccCcc-ccCc----------cc-cccc-
Confidence                            2345689999988776655544 345557777642111111 0000          00 0000 


Q ss_pred             HHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCchhhHHHHHHHHHHHHHH
Q 043907          120 DLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSAVVAGGMGTVL  198 (330)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~  198 (330)
                      +.+++.++.++.+...++.++++.    ++...+..+...........+.|.+.+ ..|+++.+.+ .......+..+++
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~  268 (379)
T TIGR00881       194 DAEKKEEELTKKQIFLQYVLLNKV----LWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKAS-WAFTLYELGGLVG  268 (379)
T ss_pred             ccccccccccchHHHHHHHHhcch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHcchh
Confidence            000000000111112333333322    222333333333444556677787774 5789888888 8888889999999


Q ss_pred             HHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccccccccccccccccc
Q 043907          199 AIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIF  278 (330)
Q Consensus       199 ~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  278 (330)
                      .++.+++.||..+|+...............+.....        .+..+...........+.. ..+..+....+..|..
T Consensus       269 ~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~  339 (379)
T TIGR00881       269 TLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWL--------NPAANPLMDLICLFALGFL-VYGPQMLIGVIASELA  339 (379)
T ss_pred             HHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhc--------CcchhHHHHHHHHHHHHHH-HhhhhHHHHHHHHHhc
Confidence            999999999864333222222221111111111100        0112222222222222222 2222233345668999


Q ss_pred             chhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccch
Q 043907          279 PLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAG  315 (330)
Q Consensus       279 p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~  315 (330)
                      |++.|+++.|+.+....+++.++|.+.+.+.|+.|+.
T Consensus       340 ~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~  376 (379)
T TIGR00881       340 PKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWA  376 (379)
T ss_pred             CcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccc
Confidence            9999999999999999999999999999999988853

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.94  E-value=5.1e-25  Score=181.99  Aligned_cols=266  Identities=15%  Similarity=0.059  Sum_probs=181.2

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhh-----hHHHHHHHHHHhhcccccccc--------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAF-----NIYMLIFGRLLLGVGIGFGNQ--------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~r~l~G~~~g~~~~--------------------   56 (330)
                      ++.|+++||+|||+++..+..+..++.++.++++     +++.+++.|+++|++.+...+                    
T Consensus        52 ~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (365)
T TIGR00900        52 PIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANS  131 (365)
T ss_pred             HhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence            5789999999999999999999999998888887     999999999999999987665                    


Q ss_pred             -------------------ccCccchHHHHHhhhHHHHHHHHHHhhc--CCCchhhhccCCcHHHHHHHHHHHhcccchh
Q 043907           57 -------------------IKGGWGWRISLAMAAAPASILTIGAIFL--PETPNSKIQRSDDHQKAQKMLQRIRGISDVK  115 (330)
Q Consensus        57 -------------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~--pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~  115 (330)
                                         +.+..+||+.|++.++..++..+..+.+  ||+++    +++ .+. +            +
T Consensus       132 ~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~-~------------~  193 (365)
T TIGR00900       132 LSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAA----SEI-QAL-S------------N  193 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCC----ccc-ccc-c------------h
Confidence                               4455789999988777665554444333  33221    000 000 0            0


Q ss_pred             HHHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHH-HhHHHHHHh-cCCCCchhhHHHHHHHHH
Q 043907          116 AELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVG-LYSPVLFRT-LKLGESTSLLLSAVVAGG  193 (330)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~g~~~~~~~~~~~~~~~~  193 (330)
                      +..+          +.++.+++.++++..+.......+    ......... .+.|.+.++ .|.++.+.+ .......+
T Consensus       194 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  258 (365)
T TIGR00900       194 AVLR----------DTREGIKFVLKNPLLRTLLLLALL----FNLVFAPAIVALFPYVQSKYLGRGSTHYG-WVLAAFGL  258 (365)
T ss_pred             hHHH----------HHHhHHHHHHcCcHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHhCCchHHHH-HHHHHHHH
Confidence            0000          001123444443332222222211    112222333 667777765 788888888 88888899


Q ss_pred             HHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccc
Q 043907          194 MGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLV  273 (330)
Q Consensus       194 ~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (330)
                      +.+++.++.+++.||.+||+....+....+++.......           + .+.+...+...+.+.+.+.. .+....+
T Consensus       259 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~~~~~~~~~~g~~~~~~-~~~~~~~  325 (365)
T TIGR00900       259 GALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT-----------P-PNFPLFLVLWFAIGVGYGPI-NVPQGTL  325 (365)
T ss_pred             HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh-----------c-hhHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            999999999999999999998887766666655554442           1 12333444444444444433 3445566


Q ss_pred             cccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907          274 PSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK  313 (330)
Q Consensus       274 ~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g  313 (330)
                      ..|..|+++|+++.|+.+....++..+++.+.+.+.|..|
T Consensus       326 ~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       326 LQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            7899999999999999999999999999999999988764

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.93  E-value=2.3e-24  Score=178.76  Aligned_cols=271  Identities=13%  Similarity=0.150  Sum_probs=173.3

Q ss_pred             cchhhhhhhhchhHHHHH-HHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc------------------------
Q 043907            2 LIASSVTRAIGRKVSILI-GGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------   56 (330)
                      ++.|+++||+||||.++. +.....++.+++++++|++.+++.|+++|.+.+...+                        
T Consensus        51 ~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  130 (375)
T TIGR00899        51 QLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVM  130 (375)
T ss_pred             HHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHH
Confidence            578999999999887654 5666677778888999999999999998876665444                        


Q ss_pred             -----------------ccCccchHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHH
Q 043907           57 -----------------IKGGWGWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAEL  118 (330)
Q Consensus        57 -----------------~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  118 (330)
                                       +.+..+||+.|++.++..++..+. .+++||+|+...   +  ++                  
T Consensus       131 ~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~------------------  187 (375)
T TIGR00899       131 RAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAP---G--AL------------------  187 (375)
T ss_pred             HHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCcc---c--cc------------------
Confidence                             445578999999988776665554 445888764210   0  00                  


Q ss_pred             HHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHH
Q 043907          119 NDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTV  197 (330)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~  197 (330)
                                  ++.+.++.++++..+.......+..    ........+.|.+. ++.|.++.+.+ ...........+
T Consensus       188 ------------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~~~~~~~~~  250 (375)
T TIGR00899       188 ------------TRLEVRGLLASRDTRLLFVACTLMW----GCNILYIINMPLLIIHELGLPDKLAG-LMMGTAAGLEIP  250 (375)
T ss_pred             ------------CcchhhhhhcCcchHHHHHHHHHHH----HHHHHHHhhhHHHHHHHcCCCHHHHH-HHHHHHHHHHHH
Confidence                        0001122232322222222222211    22233344556665 56788888877 666666677788


Q ss_pred             HHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccc
Q 043907          198 LAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEI  277 (330)
Q Consensus       198 ~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  277 (330)
                      +.++.+++.||+|||+.+..+.....+........             ++.+.......+.+.+.+.. .+....+..|.
T Consensus       251 ~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~g~~-~~~~~~~~~~~  316 (375)
T TIGR00899       251 FMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD-------------NSLWALLMLQLLNAIFIGIL-AGIGMLYFQDL  316 (375)
T ss_pred             HHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh
Confidence            88999999999999998877665544433332221             22232333333333333322 23444566788


Q ss_pred             cchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHHHHHHHh
Q 043907          278 FPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFGGLVLIM  327 (330)
Q Consensus       278 ~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~  327 (330)
                      .|+ +++++.++.+...+++..++|.+.+.+.+..|+ ..+++.+++++++
T Consensus       317 ~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~  366 (375)
T TIGR00899       317 MPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVA  366 (375)
T ss_pred             Ccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence            876 467999999999999999999999999998884 5566555555443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.93  E-value=4.3e-24  Score=176.94  Aligned_cols=267  Identities=14%  Similarity=0.098  Sum_probs=170.7

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ-------------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~-------------------------   56 (330)
                      +++|+++||+|||+++..+..+.+++.+++++++|++.+++.|+++|++.+...+                         
T Consensus        56 ~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (382)
T PRK10091         56 PIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSG  135 (382)
T ss_pred             HHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHH
Confidence            6789999999999999999999999999999999999999999999999886544                         


Q ss_pred             --------------ccCccchHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHH
Q 043907           57 --------------IKGGWGWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDL  121 (330)
Q Consensus        57 --------------~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  121 (330)
                                    +.+..+||+.|.+.++..++..+. ..++||.++    +.+ .+.                     
T Consensus       136 ~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~----~~~-~~~---------------------  189 (382)
T PRK10091        136 MTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRD----EAK-GGL---------------------  189 (382)
T ss_pred             HHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCc----ccc-cCH---------------------
Confidence                          344579999999988766555443 445777542    100 000                     


Q ss_pred             HHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHHHHH
Q 043907          122 IRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTVLAI  200 (330)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~  200 (330)
                                ++.++ .++++.   .+. ..........+......+.+.++ +..|+++.+.+ ...+...++.+++.+
T Consensus       190 ----------~~~~~-~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~-~~~~~~~~~~~ig~~  253 (382)
T PRK10091        190 ----------REQFH-FLRSPA---PWL-IFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMT-FIMMLVGLGMVLGNL  253 (382)
T ss_pred             ----------HHHHH-HhcChH---HHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHhH
Confidence                      00011 111211   111 11111111122233334444445 45799988888 888899999999999


Q ss_pred             HHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccch
Q 043907          201 ISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPL  280 (330)
Q Consensus       201 ~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~  280 (330)
                      +.+++.||+++|+....+..+..++.+.+....            +..+...........+......+.......+..|+
T Consensus       254 ~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  321 (382)
T PRK10091        254 LSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFG------------GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGG  321 (382)
T ss_pred             HHheeccccCchhHHHHHHHHHHHHHHHHHHHH------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcc
Confidence            999999999999998887777666655443321            12222222222332322222222322333455555


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhc-cc-hhHHHHHHHH
Q 043907          281 EIRSAGQSITVAVNFVFTFLTAQTFLPMLCHF-KA-GIFFFFGGLV  324 (330)
Q Consensus       281 ~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-g~-~~~~~~~~~~  324 (330)
                      +.++.+.  .+....++..++|.+.|.+.|.. ++ ..+.+.++++
T Consensus       322 ~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~  365 (382)
T PRK10091        322 ELLGAAG--GQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLS  365 (382)
T ss_pred             hHHHHHH--HHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHH
Confidence            5555543  46678899999999999999964 44 4444443333

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.93  E-value=1.3e-23  Score=175.45  Aligned_cols=266  Identities=15%  Similarity=0.141  Sum_probs=171.0

Q ss_pred             CcchhhhhhhhchhHHHHHHHHHHHHHHHHHhhh--------hhHHHHHHHHHHhhcccccccc----------------
Q 043907            1 SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSA--------FNIYMLIFGRLLLGVGIGFGNQ----------------   56 (330)
Q Consensus         1 ~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~~r~l~G~~~g~~~~----------------   56 (330)
                      +++.|+++||+|||+++..+.++.+++.+.+.++        .++..+++.|+++|++.+...+                
T Consensus        68 ~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~  147 (399)
T PRK05122         68 RPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTG  147 (399)
T ss_pred             chhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhc
Confidence            3688999999999999999999988877766543        2567899999999999987765                


Q ss_pred             -----------------------ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccc
Q 043907           57 -----------------------IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISD  113 (330)
Q Consensus        57 -----------------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~  113 (330)
                                             +.+..|||+.+.+..+..++........||+++    +++                 
T Consensus       148 ~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-----------------  206 (399)
T PRK05122        148 RVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLARPRPAVPP----VKG-----------------  206 (399)
T ss_pred             cchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCCCC----CCc-----------------
Confidence                                   445578998887766554443333222333211    000                 


Q ss_pred             hhHHHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHH
Q 043907          114 VKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGG  193 (330)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  193 (330)
                                       ++.++++.+++. + .......+    ..........+.+.+.++.|.+  +.+ .......+
T Consensus       207 -----------------~~~~~~~~~~~~-~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~  260 (399)
T PRK05122        207 -----------------ERLPFRRVLGRV-W-PYGMGLAL----ASIGFGTIATFITLYYAARGWD--GAA-LALTLFGV  260 (399)
T ss_pred             -----------------cchhHHHHHHHH-H-HHHHHHHH----HHHHHHHHHHHHHHHHHHcccc--cch-HHHHHHHH
Confidence                             000111211110 0 01111111    1122334455667777666663  334 55667788


Q ss_pred             HHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccc
Q 043907          194 MGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLV  273 (330)
Q Consensus       194 ~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (330)
                      +.+++.++.+++.||++||+.+..+..+..++...+...             ++.+.......+.+.+.+... +.....
T Consensus       261 ~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~G~~~~~~~-~~~~~~  326 (399)
T PRK05122        261 AFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA-------------PSPWMALIGAALTGFGFSLVF-PALGVE  326 (399)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh-------------ccHHHHHHHHHHHHHhHHHHH-HHHHHH
Confidence            889999999999999999998887777766666555432             223333333444444444333 232344


Q ss_pred             cccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHHHHHHHh
Q 043907          274 PSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFGGLVLIM  327 (330)
Q Consensus       274 ~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~  327 (330)
                      ..|..|++.|+++.|+.+....++..+++.+.+.+.+..|+ ..+++.+++++++
T Consensus       327 ~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~  381 (399)
T PRK05122        327 AVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLG  381 (399)
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence            46889999999999999999999999999999999998884 5666655555444

>PRK03699 putative transporter; Provisional

Probab=99.93  E-value=7.5e-24  Score=176.27  Aligned_cols=271  Identities=13%  Similarity=0.046  Sum_probs=177.1

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ-------------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~-------------------------   56 (330)
                      ++.|++.||+|||+++..+.++..++.++++++++++.+++.|+++|++.|...+                         
T Consensus        60 ~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~  139 (394)
T PRK03699         60 FLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSF  139 (394)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999998886654                         


Q ss_pred             ---------------ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHH
Q 043907           57 ---------------IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDL  121 (330)
Q Consensus        57 ---------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  121 (330)
                                     +.+..+||+.|.+.+++.++..+..++ ++.|+.  ++++ .                       
T Consensus       140 ~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~--~~~~-~-----------------------  192 (394)
T PRK03699        140 FSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTLF-SEFPAL--GKHA-P-----------------------  192 (394)
T ss_pred             HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHh-cCCccc--cccC-c-----------------------
Confidence                           234578999998877766555444332 222220  0000 0                       


Q ss_pred             HHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCchhhHHHHHHHHHHHHHHHH
Q 043907          122 IRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSAVVAGGMGTVLAI  200 (330)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~  200 (330)
                          +++++   ..    ++.. ++.++...+..+...........|.|.+.+ +.|+++.+.+ ...+...++..++.+
T Consensus       193 ----~~~~~---~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~-~~~~~~~~~~~ig~~  259 (394)
T PRK03699        193 ----KADKP---VA----KEKW-GIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAG-NLVSNFWMAYMVGMW  259 (394)
T ss_pred             ----cccCc---cc----cccC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhh-HHHHHHHHHHHHHHH
Confidence                00000   00    0111 122222333333333445567788999884 5799998888 788888899999999


Q ss_pred             HHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccch
Q 043907          201 ISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPL  280 (330)
Q Consensus       201 ~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~  280 (330)
                      +.++++||++||+.+.....+..+....+...             ++...........+.+.+ +..+....+..|..| 
T Consensus       260 ~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~G~~~~-~~~~~~~~~~~~~~~-  324 (394)
T PRK03699        260 IFSFIVRFFDLQRILTVLAGLALVLMYLFVNT-------------DDPSHLLYAILGLGFFSS-AIYTTIITLGSQQTK-  324 (394)
T ss_pred             HHHHHHHHhchhhHHHHHHHHHHHHHHHHHHc-------------CCchHHHHHHHHHHHHHH-HHHHHHHHHHHHHcc-
Confidence            99999999999998877665555443333221             122222222233332222 222333334456555 


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc-chhHHHHHHHHHHh
Q 043907          281 EIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK-AGIFFFFGGLVLIM  327 (330)
Q Consensus       281 ~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~  327 (330)
                      +.+++..+.......+++.++|.+.+.+.|..| ...++..++++.++
T Consensus       325 ~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~  372 (394)
T PRK03699        325 VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVV  372 (394)
T ss_pred             CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHH
Confidence            346677888888999999999999999999888 45555555544443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.93  E-value=1.3e-23  Score=174.33  Aligned_cols=265  Identities=18%  Similarity=0.114  Sum_probs=170.9

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ-------------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~-------------------------   56 (330)
                      ++.|+++||+|||+++..+.++.+++.+++++++|++.+++.|+++|++.|...+                         
T Consensus        73 ~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~  152 (394)
T PRK10213         73 LFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGA  152 (394)
T ss_pred             HHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999998665                         


Q ss_pred             --------------ccCccchHHHHHhhhHHHHHHHHHH-hhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHH
Q 043907           57 --------------IKGGWGWRISLAMAAAPASILTIGA-IFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDL  121 (330)
Q Consensus        57 --------------~~~~~~wr~~~~~~~~~~~~~~~~~-~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  121 (330)
                                    +.+.++||+.|++.++.+++..+.. ...||+|+.   +++                         
T Consensus       153 ~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~---~~~-------------------------  204 (394)
T PRK10213        153 VSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGE---PSH-------------------------  204 (394)
T ss_pred             HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCcc---ccc-------------------------
Confidence                          5556799999998877665544433 346765420   000                         


Q ss_pred             HHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhH-HHHHHhcCCCCchhhHHHHHHHHHHHHHHHH
Q 043907          122 IRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYS-PVLFRTLKLGESTSLLLSAVVAGGMGTVLAI  200 (330)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  200 (330)
                               ...+.++.++++..    +...+..+....+......+. |.+.++.|+++.+.+ ......+++.+++.+
T Consensus       205 ---------~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g-~~~~~~~~~~iig~~  270 (394)
T PRK10213        205 ---------QKQNTFRLLQRPGV----MAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLT-LVLLSFGIASFVGTS  270 (394)
T ss_pred             ---------chhHHHHHhcCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHH-HHHHHHHHHHHHHHH
Confidence                     00112233333222    222122222222333334444 777777899988888 778888899999999


Q ss_pred             HHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccch
Q 043907          201 ISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPL  280 (330)
Q Consensus       201 ~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~  280 (330)
                      +.+++.||.+ |+.+..+.....+....+....            .+.+.......+.+.+++.... .....+.+..| 
T Consensus       271 ~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~------------~~~~~~~~~~~l~G~~~~~~~~-~~~~~~~~~~~-  335 (394)
T PRK10213        271 LSSFILKRSV-KLALAGAPLVLAVSALVLTLWG------------SDKIVATGVAIIWGLTFALVPV-GWSTWITRSLA-  335 (394)
T ss_pred             HHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHh------------hhHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHCc-
Confidence            9999999954 4443434333333322322221            2233333344444444433332 33334456666 


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHHHH
Q 043907          281 EIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFGGL  323 (330)
Q Consensus       281 ~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~  323 (330)
                      +++++..+......+++..+++.+.|.+.|..|. ..+...+++
T Consensus       336 ~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~  379 (394)
T PRK10213        336 DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTL  379 (394)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHH
Confidence            4466777777788889999999999999998885 344443333

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.93  E-value=1.5e-24  Score=185.81  Aligned_cols=290  Identities=15%  Similarity=0.115  Sum_probs=187.2

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ-------------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~-------------------------   56 (330)
                      ++.|+++||+|||+++..+.++..++++++++++|++.+++.|+++|++.+...+                         
T Consensus        55 ~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~  134 (485)
T TIGR00711        55 PLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLT  134 (485)
T ss_pred             HhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999987765                         


Q ss_pred             --------------ccCccchHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHH--------H-H-Hhcc
Q 043907           57 --------------IKGGWGWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKML--------Q-R-IRGI  111 (330)
Q Consensus        57 --------------~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~--------~-~-~~~~  111 (330)
                                    +.+..+||+.|++.+..+++..+. .+..||+++.  ++++ .|......        . . .+++
T Consensus       135 ~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~d~~g~~l~~~~~~~~~~~~~~~~  211 (485)
T TIGR00711       135 VLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPA--ASEN-FDFLGLLLLSVGLGSLLYGLSEGP  211 (485)
T ss_pred             HHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCcccc--ccCC-CcHHHHHHHHHHHHHHHHHHhhCC
Confidence                          455689999999988776665544 4456765431  1111 22111100        0 0 0000


Q ss_pred             -cc--hhHHHHH------------HHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHh-
Q 043907          112 -SD--VKAELND------------LIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRT-  175 (330)
Q Consensus       112 -~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  175 (330)
                       ++  .+.+...            ...+. ++++...+ .+.++++.....    .+..+...........+.|.++++ 
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~p~~~~~~  285 (485)
T TIGR00711       212 ERGWFDSNEILILSITGLVAIIAFVVWEL-TDDNPLVD-LRLFKYRNFTIG----CVYMSLLGLGLYGSFYLLPLYLQQV  285 (485)
T ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHHH-cCCCCccC-HHHHcCCChHHH----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             00  0000000            00000 01111111 233433332222    222222333445556778888865 


Q ss_pred             cCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHH
Q 043907          176 LKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLV  255 (330)
Q Consensus       176 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (330)
                      .|+++.+.+ .......++..++.++.|++.||+|||+.+..+..+..++...+....         .++...+......
T Consensus       286 ~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~  355 (485)
T TIGR00711       286 LGYTALQAG-LHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTF---------TPDTPFLAIALPQ  355 (485)
T ss_pred             cCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccC---------CCCCCHHHHHHHH
Confidence            689998888 888889999999999999999999999998888777776665554211         0112222233333


Q ss_pred             HHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhh
Q 043907          256 CLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCH  311 (330)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~  311 (330)
                      .+.+.+.+....+... ...|..|+++|+++.|+.+....+++.+++.+.+.+.++
T Consensus       356 ~l~g~g~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       356 FIRGFGMGCFFMPLTT-IALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHHHHHH-HHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444433 335778999999999999999999999999999988764

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK12382 putative transporter; Provisional

Probab=99.93  E-value=2e-23  Score=173.82  Aligned_cols=266  Identities=14%  Similarity=0.141  Sum_probs=167.4

Q ss_pred             CcchhhhhhhhchhHHHHHHHHHHHHHHHHHh--------hhhhHHHHHHHHHHhhcccccccc----------------
Q 043907            1 SLIASSVTRAIGRKVSILIGGVAFLADSAYGG--------SAFNIYMLIFGRLLLGVGIGFGNQ----------------   56 (330)
Q Consensus         1 ~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~--------~~~~~~~~~~~r~l~G~~~g~~~~----------------   56 (330)
                      ++++|+++||+||||++..+.+...++.+...        ..+|++.+++.|+++|++.+...+                
T Consensus        68 ~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~  147 (392)
T PRK12382         68 RGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSG  147 (392)
T ss_pred             hhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccc
Confidence            36789999999999999999888777654322        136889999999999999886544                


Q ss_pred             -----------------------ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccc
Q 043907           57 -----------------------IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISD  113 (330)
Q Consensus        57 -----------------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~  113 (330)
                                             +.+..|||+.+.+..+..++........||.++   ++++                 
T Consensus       148 ~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-----------------  207 (392)
T PRK12382        148 KVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWAFNGTVRKVPA---HAGE-----------------  207 (392)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhccCCCC---Cccc-----------------
Confidence                                   344568888766554443332222222233211   0000                 


Q ss_pred             hhHHHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHH
Q 043907          114 VKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGG  193 (330)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  193 (330)
                                        +.+.++..+.. +++... ..+    ...+......+.|.++++.++++  .+ .......+
T Consensus       208 ------------------~~~~~~~~~~~-~~~~~~-~~l----~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~  260 (392)
T PRK12382        208 ------------------RPSLWSVVGLI-WKPGLG-LAL----QGVGFAVIGTFVSLYFASKGWAM--AG-FTLTAFGG  260 (392)
T ss_pred             ------------------CchHHHHHHHH-HHhHHH-HHH----HHHHHhHHHHHHHHHHHhcCCch--hH-HHHHHHHH
Confidence                              00111111110 011111 111    11223345566677777666653  34 45566777


Q ss_pred             HHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccc
Q 043907          194 MGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLV  273 (330)
Q Consensus       194 ~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (330)
                      +.+++.++.+++.||+|+|+.+..+..+..++.+.+...             ++.+.......+.+.+.+... +.....
T Consensus       261 ~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~g~~~~~~~-~~~~~~  326 (392)
T PRK12382        261 AFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA-------------PTAWVALAGAALTGAGCSLIF-PALGVE  326 (392)
T ss_pred             HHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc-------------ccHHHHHHHHHHHHHHHHhHH-HHHHHH
Confidence            888999999999999999999888877777666554432             223333333344444433322 333444


Q ss_pred             cccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHHHHHHHh
Q 043907          274 PSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFGGLVLIM  327 (330)
Q Consensus       274 ~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~  327 (330)
                      ..|.+|+++|+++.|+.+....++..++|.+.+.+.|+.|+ ..+.+.+++.+++
T Consensus       327 ~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~  381 (392)
T PRK12382        327 VVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLG  381 (392)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999885 5566655555443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.92  E-value=2.3e-23  Score=177.25  Aligned_cols=296  Identities=16%  Similarity=0.130  Sum_probs=183.8

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHhhcccccccc-----------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSA--FNIYMLIFGRLLLGVGIGFGNQ-----------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~r~l~G~~~g~~~~-----------------------   56 (330)
                      ++.|+++||+|||+++..+.++++++.+++.++  .++..+++.|+++|++.+...+                       
T Consensus        94 ~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  173 (465)
T TIGR00894        94 IPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMST  173 (465)
T ss_pred             cchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHH
Confidence            578999999999999999999999998887554  5688899999999999998877                       


Q ss_pred             ----------------ccCc-cchHHHHHhhhHHHHHHHHHHh-hcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHH
Q 043907           57 ----------------IKGG-WGWRISLAMAAAPASILTIGAI-FLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAEL  118 (330)
Q Consensus        57 ----------------~~~~-~~wr~~~~~~~~~~~~~~~~~~-~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  118 (330)
                                      +.+. .+||+.|++.++.+++..+..+ +.||+|+..   .++.++.++..             
T Consensus       174 ~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~---~~~~~~~~~~i-------------  237 (465)
T TIGR00894       174 SGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIH---PCISKFEKKYI-------------  237 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccC---CCCCHHHHHHH-------------
Confidence                            4455 4999999998887776655544 466777521   11011100000             


Q ss_pred             HHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCchhhHHHHHHHHHHHHH
Q 043907          119 NDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSAVVAGGMGTV  197 (330)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~  197 (330)
                      ++..++.+++++.+.++++.+++    +.++...+..+......+.+..|.|.+++ ..|.+..+.+ .......++..+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g-~~~~~~~~~~~i  312 (465)
T TIGR00894       238 NSSLQGQKGSTRQSLPIKAIPKS----LPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENG-LLSSLPYLFAWL  312 (465)
T ss_pred             HhhcccccCCCCCCCCHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhH-HHHHHHHHHHHH
Confidence            00000001111123346666544    33444555555566667778889998885 5789988888 888888999999


Q ss_pred             HHHHHHHHHHHhCcchhhhH---hhHHHHHHH---HHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccc
Q 043907          198 LAIISMILADKFGRKVLFLV---GGMQMLVSQ---VIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAW  271 (330)
Q Consensus       198 ~~~~~g~l~d~~grr~~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (330)
                      +.++.|+++||+++|+....   ......++.   .........        ........+.+..+...+.+.. .+...
T Consensus       313 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~-~~~~~  383 (465)
T TIGR00894       313 CSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPY--------LSAAFYLTIIILTLANAVSSGP-LAGVL  383 (465)
T ss_pred             HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH--------cCCchHHHHHHHHHHHHHhhhh-hhhhh
Confidence            99999999999865532110   001111111   111111100        0112222222233322222222 22233


Q ss_pred             cccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhc--c-c-hhHHHHHHHHHHhh
Q 043907          272 LVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHF--K-A-GIFFFFGGLVLIMT  328 (330)
Q Consensus       272 ~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--g-~-~~~~~~~~~~~~~~  328 (330)
                      ....|..| +.+|++.|+.+..+.++++++|.+.+.+.+..  + | ..|.+.+++++++.
T Consensus       384 ~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~  443 (465)
T TIGR00894       384 INSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCV  443 (465)
T ss_pred             hchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHH
Confidence            34446666 48999999999999999999999999887754  3 3 45566665555543

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.92  E-value=2.8e-23  Score=172.27  Aligned_cols=290  Identities=16%  Similarity=0.206  Sum_probs=202.0

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHhhcccccccc-----------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAF--NIYMLIFGRLLLGVGIGFGNQ-----------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~g~~~~-----------------------   56 (330)
                      ++.|+++||+|-|+++..+.++.++++++...+.  +++.+++.|++||++.|...+                       
T Consensus        91 iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~  170 (466)
T KOG2532|consen   91 IPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILT  170 (466)
T ss_pred             cCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHH
Confidence            4679999999999999999999999999998884  446889999999999999887                       


Q ss_pred             ----------------ccCc-cchHHHHHhhhHHHHHHHHHHh-hcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHH
Q 043907           57 ----------------IKGG-WGWRISLAMAAAPASILTIGAI-FLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAEL  118 (330)
Q Consensus        57 ----------------~~~~-~~wr~~~~~~~~~~~~~~~~~~-~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  118 (330)
                                      +.+. .||+..|++.++.+++..++++ +..|+|..   +.. ..               ++|.
T Consensus       171 ~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~---h~~-is---------------~~El  231 (466)
T KOG2532|consen  171 AGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK---HPN-IS---------------EKEL  231 (466)
T ss_pred             HHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc---CCC-CC---------------HHHH
Confidence                            3444 8999999999998888777654 46777752   111 11               1222


Q ss_pred             HHHHHhccccc---cCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCchhhHHHHHHHHHH
Q 043907          119 NDLIRASSTSK---SITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSAVVAGGM  194 (330)
Q Consensus       119 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~  194 (330)
                      +.+++.+.+++   +.+.|+++++++    +.+++..+..+....+.+.+..|.|.|++ .+|++..+.+ +..++..+.
T Consensus       232 ~~I~~~k~~~~~~~~~~vP~~~i~ts----~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G-~~salP~l~  306 (466)
T KOG2532|consen  232 KYIEKGKSEAHVKKKPPVPYKAILTS----PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETG-FLSALPFLA  306 (466)
T ss_pred             HHHHhcccccccCCCCCCCHHHHHcC----HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhh-HHHHHHHHH
Confidence            22222222221   146789988876    56677788888888889999999999996 4799999999 999999999


Q ss_pred             HHHHHHHHHHHHHHhCcc---------hhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccc
Q 043907          195 GTVLAIISMILADKFGRK---------VLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYS  265 (330)
Q Consensus       195 ~~~~~~~~g~l~d~~grr---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (330)
                      ..+..+++|.++||..+|         ..-.++....+++++.+++.           ++.+.+..+++..+.....+..
T Consensus       307 ~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~-----------~~~~~~~a~~~l~~~~~~~g~~  375 (466)
T KOG2532|consen  307 MAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFT-----------SDEHRLLAVILLTIAIGLSGFN  375 (466)
T ss_pred             HHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeec-----------CCCcchHHHHHHHHHHHHcccc
Confidence            999999999999998663         22233333444444444433           2222222333222222222211


Q ss_pred             cccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhc---cc-hhHHHHHHHHHHhh
Q 043907          266 WGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHF---KA-GIFFFFGGLVLIMT  328 (330)
Q Consensus       266 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---g~-~~~~~~~~~~~~~~  328 (330)
                      .... ..-..+. .+++-+..+|+.+....+.++++|.+.+.+.++.   .| ..|++.+++.+++.
T Consensus       376 ~~Gf-~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~  440 (466)
T KOG2532|consen  376 ISGF-YKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGN  440 (466)
T ss_pred             hhhh-Hhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhc
Confidence            1111 1111232 4578999999999999999999999999998421   24 56777777766654

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.92  E-value=2.2e-23  Score=174.72  Aligned_cols=276  Identities=14%  Similarity=0.093  Sum_probs=173.3

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ-------------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~-------------------------   56 (330)
                      ++.|+++||+|||+++..+.+...++.++..++++++.+++.|++.|++.+....                         
T Consensus        72 ~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (408)
T PRK09874         72 PFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGG  151 (408)
T ss_pred             HHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999997654322                         


Q ss_pred             -------------ccCccchHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHHH
Q 043907           57 -------------IKGGWGWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLI  122 (330)
Q Consensus        57 -------------~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  122 (330)
                                   +.+..+||+.|.+.++..++..+. .+++||+++.   .++ .++                  .+. 
T Consensus       152 ~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~------------------~~~-  208 (408)
T PRK09874        152 VSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQP---VSK-KEM------------------LHM-  208 (408)
T ss_pred             HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCccc---ccc-hhh------------------hHH-
Confidence                         445578999998887766655444 4446665321   000 000                  000 


Q ss_pred             HhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCch----hhHHHHHHHHHHHHHH
Q 043907          123 RASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGEST----SLLLSAVVAGGMGTVL  198 (330)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~  198 (330)
                                .+..+.++++......   ................+.+.+.++.+.+..+    .+ ......+++.+++
T Consensus       209 ----------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~l~~~~~  274 (408)
T PRK09874        209 ----------REVVTSLKNPKLVLSL---FVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISG-MIASVPGVAALLS  274 (408)
T ss_pred             ----------HHHHHhCcCCchHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH-HHHHHHHHHHHHH
Confidence                      0011112222111111   1111111122233344555555543332222    22 4445567788888


Q ss_pred             HHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccccccccccccccccc
Q 043907          199 AIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIF  278 (330)
Q Consensus       199 ~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  278 (330)
                      .+..|++.||++||+.+..+.....+..+.....             ++.+.......+.+.+.+.. .+.......+..
T Consensus       275 ~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~  340 (408)
T PRK09874        275 APRLGKLGDRIGPEKILITALIFSVLLLIPMSFV-------------QTPLQLGILRFLLGAADGAL-LPAVQTLLVYNS  340 (408)
T ss_pred             HHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh-------------ccHHHHHHHHHHHHhhhHhh-HHHHHHHHHHhC
Confidence            9999999999999999888777665555443332             22233333333333333322 233344446778


Q ss_pred             chhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHHHHHHHhh
Q 043907          279 PLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFGGLVLIMT  328 (330)
Q Consensus       279 p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~  328 (330)
                      |++.||+.+++.+....++..++|.+.+.+.+..|+ ..|++.+++.+++.
T Consensus       341 ~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~  391 (408)
T PRK09874        341 SNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNA  391 (408)
T ss_pred             CcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence            889999999999999999999999999999998884 56666666555543

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.92  E-value=4e-24  Score=179.36  Aligned_cols=273  Identities=14%  Similarity=0.052  Sum_probs=180.1

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHhhcccccccc--------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGS-----AFNIYMLIFGRLLLGVGIGFGNQ--------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~r~l~G~~~g~~~~--------------------   56 (330)
                      ++.|+++||+|||+++..+..+.+++.+..+.     .++++.+++.|+++|++.+...+                    
T Consensus        70 ~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (417)
T PRK10489         70 MVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGA  149 (417)
T ss_pred             HhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHH
Confidence            57899999999999999988887777665442     46788999999999988775443                    


Q ss_pred             -------------------ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHH
Q 043907           57 -------------------IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAE  117 (330)
Q Consensus        57 -------------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  117 (330)
                                         +.+..+||+.|.+.++..++..+..+.+||+++..  +++  ++                .
T Consensus       150 ~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~--~~----------------~  209 (417)
T PRK10489        150 ITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPALPPPP--QPR--EH----------------P  209 (417)
T ss_pred             HHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCCC--ccc--cc----------------c
Confidence                               33446899999888777666666666777765311  000  00                0


Q ss_pred             HHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHh-cCCCCchhhHHHHHHHHHHHH
Q 043907          118 LNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRT-LKLGESTSLLLSAVVAGGMGT  196 (330)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~  196 (330)
                      .+          +.++.++..++++..+........    ... ......+.|.+.++ .|.++...+ .......++.+
T Consensus       210 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~p~~~~~~~g~~~~~~g-~~~~~~~~g~~  273 (417)
T PRK10489        210 LR----------SLLAGFRFLLASPVVGGIALLGGL----LTM-ASAVRVLYPALADEVWQMGAAQIG-LLYAAVPLGAA  273 (417)
T ss_pred             hH----------HHHHHHHHHHcChHHHHHHHHHHH----HHH-HHhHHHhhHHHHHhccCCChhHhH-HHHHHHHHHHH
Confidence            00          001122333333222222221111    111 23445677888876 789888888 88888899999


Q ss_pred             HHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccccccccccccccc
Q 043907          197 VLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSE  276 (330)
Q Consensus       197 ~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  276 (330)
                      ++.++.+++.||.++++.+..+.....++.+.+...             ++.+.......+.+.+.+. ..+....++.|
T Consensus       274 ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~  339 (417)
T PRK10489        274 LGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM-------------PMWILAVLCLALFGYLSAI-SSLLQYTLLQT  339 (417)
T ss_pred             HHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc-------------chHHHHHHHHHHHHHHHHH-HHHHHHHHHHh
Confidence            999999999999877777777766666555444321             2223333333333333222 22344566689


Q ss_pred             ccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc-chhHHHHHHHH
Q 043907          277 IFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK-AGIFFFFGGLV  324 (330)
Q Consensus       277 ~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~  324 (330)
                      ..|++.||++.|+.+....++..+++.+.|.+.+..| ...++..+++.
T Consensus       340 ~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~  388 (417)
T PRK10489        340 QTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGL  388 (417)
T ss_pred             hCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHH
Confidence            9999999999999999999999999999999999988 45555555443

>TIGR00897 2A0118 polyol permease family

Probab=99.92  E-value=5.3e-23  Score=171.57  Aligned_cols=281  Identities=15%  Similarity=0.087  Sum_probs=169.8

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHh---h-hhhHHHHHHHHHHhhcccccccc---------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGG---S-AFNIYMLIFGRLLLGVGIGFGNQ---------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~---~-~~~~~~~~~~r~l~G~~~g~~~~---------------------   56 (330)
                      ++.|+++||+|||+++..+..+.+++++++.   . .++++.+++.|+++|++.+...+                     
T Consensus        66 ~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~  145 (402)
T TIGR00897        66 WISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGW  145 (402)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHH
Confidence            6789999999999999999999998877553   3 35788899999999998876543                     


Q ss_pred             -------------------ccCccchHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhH
Q 043907           57 -------------------IKGGWGWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKA  116 (330)
Q Consensus        57 -------------------~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~  116 (330)
                                         +.+..||+..++.......+..+. .++.+|.++   ++++ ++                 
T Consensus       146 ~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~-----------------  204 (402)
T TIGR00897       146 FWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDIFT---PQHM-QT-----------------  204 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCCCCC---cccc-cC-----------------
Confidence                               233456544433322222222222 222333211   0000 00                 


Q ss_pred             HHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHH
Q 043907          117 ELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGT  196 (330)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  196 (330)
                              +++.++..+.++++++++.    ++...+..+...........+.|.+.++.|+++.+.+ .......++..
T Consensus       205 --------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~-~~~~~~~~~~~  271 (402)
T TIGR00897       205 --------REKFSELGKAATILFTNPN----VLLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWL-QIWGTFFFTNI  271 (402)
T ss_pred             --------CcchhhHHHHHHHHHcChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHH-HHHHHHHHHHH
Confidence                    0000000112334444332    2222233333444556677889999988999988877 77778889999


Q ss_pred             HHHHHHHHHHHHhCcchhhh-HhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccc
Q 043907          197 VLAIISMILADKFGRKVLFL-VGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPS  275 (330)
Q Consensus       197 ~~~~~~g~l~d~~grr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (330)
                      ++.++.|+++||++||+... .+.....+..+.+......        ..++.+.........+.+.+. ..+.. ....
T Consensus       272 ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~--------~~~~~~~~~~~~~~~G~~~~~-~~~~~-~~~~  341 (402)
T TIGR00897       272 VFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQH--------FGHSFAVALIIAIALGIFLAG-YVPLA-AVFP  341 (402)
T ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHc--------cCCcHHHHHHHHHHHHHHHHH-HHHHH-HHHH
Confidence            99999999999999988764 2333333333222221100        011222233333333333332 23332 3345


Q ss_pred             cccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc-chhHHHHHHHHHHh
Q 043907          276 EIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK-AGIFFFFGGLVLIM  327 (330)
Q Consensus       276 e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~  327 (330)
                      |..| ++|+++.|+.+....+++.++|.+.+.+.|..| ...+++.+++.+++
T Consensus       342 ~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~  393 (402)
T TIGR00897       342 TLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVS  393 (402)
T ss_pred             hhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence            6655 689999999999999999999999999999988 46677776665544

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.92  E-value=1.1e-23  Score=177.58  Aligned_cols=298  Identities=15%  Similarity=0.070  Sum_probs=174.4

Q ss_pred             CcchhhhhhhhchhHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHhhcccccccc--------------------
Q 043907            1 SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSA----FNIYMLIFGRLLLGVGIGFGNQ--------------------   56 (330)
Q Consensus         1 ~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~r~l~G~~~g~~~~--------------------   56 (330)
                      +++.|+++||+|||+++..+.++.+++.+..+..    ++++.+.+.|++.|++.|...+                    
T Consensus        78 ~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~  157 (438)
T TIGR00712        78 KFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVS  157 (438)
T ss_pred             hhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHH
Confidence            3678999999999999999999999998887664    4677888999999998876544                    


Q ss_pred             --------------------ccCccchHHHHHhhhHHHHHHH-HHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchh
Q 043907           57 --------------------IKGGWGWRISLAMAAAPASILT-IGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVK  115 (330)
Q Consensus        57 --------------------~~~~~~wr~~~~~~~~~~~~~~-~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~  115 (330)
                                          .....+||..|++.++..++.. +..+++||+|+....++  .++.       +++.  +
T Consensus       158 ~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~-------~~~~--~  226 (438)
T TIGR00712       158 IWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPP--IEEY-------RNDY--P  226 (438)
T ss_pred             HHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCC--chhc-------cccc--c
Confidence                                2223689999999887766644 44556788775321100  0000       0000  0


Q ss_pred             HHHHHHHHhccccccCccch-HHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHh-cCCCCchhhHHHHHHHHH
Q 043907          116 AELNDLIRASSTSKSITQPF-KNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRT-LKLGESTSLLLSAVVAGG  193 (330)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~  193 (330)
                      .+.   .++.+++.+.++.. +..++++    .++...+..+......+....+.|.++++ .|+++.+.+ ....+..+
T Consensus       227 ~~~---~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~-~~~~~~~~  298 (438)
T TIGR00712       227 DDY---NEKAEQELTAKEIFMQYVLPNK----LLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSS-WAYFLYEY  298 (438)
T ss_pred             ccc---ccccccccchHHHHHHHHccCc----hHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHH-HHHHHHHH
Confidence            000   00000000001111 1223332    22223233333334445667788998875 588888888 77888889


Q ss_pred             HHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccc
Q 043907          194 MGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLV  273 (330)
Q Consensus       194 ~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (330)
                      ..+++.++.|++.||+++++....+........+...... .  .     +..+.+.........+.+. .+........
T Consensus       299 ~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~--~-----~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~  369 (438)
T TIGR00712       299 AGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYW-M--N-----PAGNPLVDMICMIVIGFLI-YGPVMLIGLH  369 (438)
T ss_pred             HHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHH-h--c-----CCCchHHHHHHHHHHHHHH-ccHHHHHHHH
Confidence            9999999999999999654322223222222111111110 0  0     1112222222222221111 1111111234


Q ss_pred             cccccchhhhhhhhhHHHHHHHHHH-HHHHHhhhhHHhhccc-hhHHHHHHHHHH
Q 043907          274 PSEIFPLEIRSAGQSITVAVNFVFT-FLTAQTFLPMLCHFKA-GIFFFFGGLVLI  326 (330)
Q Consensus       274 ~~e~~p~~~r~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~g~-~~~~~~~~~~~~  326 (330)
                      ..|.+|++.|+++.|+.+...++++ .++|.+.|.+.|+.|+ ..+.+.++++++
T Consensus       370 ~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~  424 (438)
T TIGR00712       370 ALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSIL  424 (438)
T ss_pred             HHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHH
Confidence            5699999999999999998888875 6799999999998884 555555554443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.92  E-value=6.3e-23  Score=168.64  Aligned_cols=252  Identities=23%  Similarity=0.339  Sum_probs=185.2

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ-------------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~-------------------------   56 (330)
                      ++.|+++||+|||+.+..+..+..++.+...++++++.+.+.|++.|++.+...+                         
T Consensus        52 ~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (352)
T cd06174          52 LLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAG  131 (352)
T ss_pred             HhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHH
Confidence            6789999999999999999999999999999999999999999999999998776                         


Q ss_pred             --------------ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHHH
Q 043907           57 --------------IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLI  122 (330)
Q Consensus        57 --------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  122 (330)
                                    +.+..+||+.+.+.++..++..+...+++                                     
T Consensus       132 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------  174 (352)
T cd06174         132 FGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL-------------------------------------  174 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------
Confidence                          11222344443333333222222211110                                     


Q ss_pred             HhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhc-CCCCchhhHHHHHHHHHHHHHHHHH
Q 043907          123 RASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTL-KLGESTSLLLSAVVAGGMGTVLAII  201 (330)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~  201 (330)
                                             +.+....+..+...........+.|.+.++. |.++.+.+ .......++..++.++
T Consensus       175 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~  230 (352)
T cd06174         175 -----------------------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAG-LLLSLFGLGGILGALL  230 (352)
T ss_pred             -----------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHH
Confidence                                   1222333334444455667777888888765 88888888 8899999999999999


Q ss_pred             HHHHHHHhCcch-hhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccch
Q 043907          202 SMILADKFGRKV-LFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPL  280 (330)
Q Consensus       202 ~g~l~d~~grr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~  280 (330)
                      .+++.||++||+ .+..+..+..++.+.....             ++.+.......+.+.+.+.. .+....+..|..|+
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~  296 (352)
T cd06174         231 GGLLSDRLGRRRLLLLIGLLLAALGLLLLALA-------------PSLALLLVALLLLGFGLGFA-FPALLTLASELAPP  296 (352)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-------------ccHHHHHHHHHHHHHHHhcc-chhHHHHHHhhcCH
Confidence            999999999999 8888888888777766653             22334444444444444433 44556777899999


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHHHHHHHhh
Q 043907          281 EIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFGGLVLIMT  328 (330)
Q Consensus       281 ~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~  328 (330)
                      ++|++..|+.+....++..+++.+.+.+.+..++ ..+.+.+++.+++.
T Consensus       297 ~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~  345 (352)
T cd06174         297 EARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAA  345 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988874 56666666665543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.92  E-value=4.5e-23  Score=171.66  Aligned_cols=265  Identities=17%  Similarity=0.141  Sum_probs=172.6

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ-------------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~-------------------------   56 (330)
                      ++.|+++||+|||+++..+..+..++.+..+++++++.+.+.|+++|++.+...+                         
T Consensus        58 ~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (385)
T TIGR00710        58 LLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPV  137 (385)
T ss_pred             HhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999987765                         


Q ss_pred             --------------ccCccchHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHH
Q 043907           57 --------------IKGGWGWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDL  121 (330)
Q Consensus        57 --------------~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  121 (330)
                                    +.+..+||+.+++.++..++..+. .+..||+++.   +++ .++                     
T Consensus       138 ~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~---------------------  192 (385)
T TIGR00710       138 LALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPY---EAR-IQI---------------------  192 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCC---ccc-CCH---------------------
Confidence                          445578999998877766555444 4446776431   000 000                     


Q ss_pred             HHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCchhhHHHHHHHHHHHHHHHH
Q 043907          122 IRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSAVVAGGMGTVLAI  200 (330)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~  200 (330)
                             ++...++++.++++..+....    ..............+.|.+++ +.|.++.+.+ .......++.+++.+
T Consensus       193 -------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~  260 (385)
T TIGR00710       193 -------STYFETFLLLLKSKMFWGYAL----IYGASFGGFFAFFSGAPFVYIDIMGVSPSVFG-LLFALNIIAMIFGGF  260 (385)
T ss_pred             -------HHHHHHHHHHHcCchhHHHHH----HHHHHHHHHHHHHHcChHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHH
Confidence                   000112333333332222221    111222333445566677664 6788888888 888888999999999


Q ss_pred             HHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccch
Q 043907          201 ISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPL  280 (330)
Q Consensus       201 ~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~  280 (330)
                      +.+++.||++||+.+..+.....++...+......        ...............+.+.+... +.......|..| 
T Consensus       261 ~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~-  330 (385)
T TIGR00710       261 LNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAIL--------GLGSWAMIIGPMMFVGIGNSMIS-SIAMAYALEDFP-  330 (385)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHh--------ccchHHHHHHHHHHHHHHHHHHH-HHHHHHHhccCc-
Confidence            99999999999998888777666665555443110        00111222222233333333222 333445567777 


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907          281 EIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK  313 (330)
Q Consensus       281 ~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g  313 (330)
                      +.|+++.++.+...+.++.+.+.+.+...+..+
T Consensus       331 ~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~~~~  363 (385)
T TIGR00710       331 HVAGTASALFGTLRLVLGAIVGYLVSLIHGNTA  363 (385)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHhccccCh
Confidence            579999999998888877777777774444333

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.92  E-value=5.9e-23  Score=171.82  Aligned_cols=269  Identities=15%  Similarity=0.099  Sum_probs=175.3

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ-------------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~-------------------------   56 (330)
                      ++.|+++||+|||+++..+.....++.+...++++++.+++.|+++|++.+...+                         
T Consensus        66 ~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  145 (406)
T PRK15402         66 WLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANV  145 (406)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999998876544                         


Q ss_pred             --------------ccCccchHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHH
Q 043907           57 --------------IKGGWGWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDL  121 (330)
Q Consensus        57 --------------~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  121 (330)
                                    +.+..+||+.|++.++..++..+. ....||+++.   +++ ..+                 .+  
T Consensus       146 ~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~-----------------~~--  202 (406)
T PRK15402        146 ALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGR---VGE-KLS-----------------LK--  202 (406)
T ss_pred             HHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCcc---ccc-ccc-----------------HH--
Confidence                          334578999998877776665544 3446776431   000 000                 00  


Q ss_pred             HHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHHHHH
Q 043907          122 IRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTVLAI  200 (330)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~  200 (330)
                              +...++++.++++..+    ...+..............+.|.++ ++.|+++.+.+ .......++..++.+
T Consensus       203 --------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g-~~~~~~~~~~~~g~~  269 (406)
T PRK15402        203 --------ELGRDYKLVLKNRRFV----AGALALGLVSLPLLAWIALSPVILISGEQLSSYEYG-LLQVPVFGALIAGNL  269 (406)
T ss_pred             --------HHHHHHHHHHcCcHHH----HHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHH
Confidence                    0011233444333222    122222212222233445567665 45788888777 666667778889999


Q ss_pred             HHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccch
Q 043907          201 ISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPL  280 (330)
Q Consensus       201 ~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~  280 (330)
                      +.+++.||+++|+....+.....++...+......        .....+.......+.+.+.+....+. .... ...++
T Consensus       270 ~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~~~~~g~g~~~~~~~~-~~~~-~~~~~  339 (406)
T PRK15402        270 TLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVI--------SSHAYLWLTAGLSLYAFGIGLANAGL-YRLT-LFSSD  339 (406)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHc--------ccccHHHHHHHHHHHHHHHHHHhhhH-HHHH-hhhcc
Confidence            99999999999999888877766666655543100        11222333333344444433332222 2222 23344


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccchh
Q 043907          281 EIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAGI  316 (330)
Q Consensus       281 ~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~  316 (330)
                      ++||+..+..+....++..+++.+.+.+.+..++..
T Consensus       340 ~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~  375 (406)
T PRK15402        340 VSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGL  375 (406)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHH
Confidence            889999999999999999999999999988877443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.91  E-value=2.7e-22  Score=166.25  Aligned_cols=266  Identities=13%  Similarity=0.093  Sum_probs=166.7

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ-------------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~-------------------------   56 (330)
                      ++.|+++||+|||+++..+.++.+++.+.+++++|++.+++.|+++|++.+...+                         
T Consensus        59 ~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (381)
T PRK03633         59 LLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMV  138 (381)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999987654                         


Q ss_pred             --------------ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHHH
Q 043907           57 --------------IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLI  122 (330)
Q Consensus        57 --------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  122 (330)
                                    +.+...|+..+.. ......... ..+.++.|+                                 
T Consensus       139 ~~~g~~~g~~~~~~l~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~---------------------------------  183 (381)
T PRK03633        139 YYLGTVLGQLLVSKVSTELMSVLPWVT-GLVLAAILP-LLFTRILNQ---------------------------------  183 (381)
T ss_pred             HHHHHHHHHHHHhcccccccchHHHHH-HHHHHHHHH-HHHhcccCC---------------------------------
Confidence                          1111111111111 100000000 001000000                                 


Q ss_pred             HhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHH
Q 043907          123 RASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIIS  202 (330)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  202 (330)
                         +++++++.+.++.++++..+........    ..........+.|.+.++.|.++++.+ .......+..+++++..
T Consensus       184 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~lp~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~  255 (381)
T PRK03633        184 ---QAENHDSTSIWPMLKLRQARLGVNGCII----SGIVLGSLYGLMPLYLNHQGMSDASIG-FWMALLVSAGILGQWPI  255 (381)
T ss_pred             ---CCCCCCCCCHHHHHHhcchHHHHHHHHH----HHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHhhh
Confidence               0000011233444444332221111111    112233444677888888888888887 77788889999999999


Q ss_pred             HHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhh
Q 043907          203 MILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEI  282 (330)
Q Consensus       203 g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~  282 (330)
                      +++.||+++|+.+..+.....++...+...             ....   ....+.+.+.. ...|.....+.|..|+++
T Consensus       256 g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~-------------~~~~---~~~~l~g~~~~-~~~p~~~~~~~~~~~~~~  318 (381)
T PRK03633        256 GRLADRFGRLLVLRVQVFVVILGSIAMLSQ-------------AAMA---PALFILGAAGF-TLYPVAMAWACEKVEHHE  318 (381)
T ss_pred             HHHHHHcCcHHHHHHHHHHHHHHHHHHhhh-------------HHHH---HHHHHHHHHHH-hHHHHHHHHHHccCCHHH
Confidence            999999999998887776666554433210             1111   11122222211 233455565678888888


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc-chhHHHHHHHHHHh
Q 043907          283 RSAGQSITVAVNFVFTFLTAQTFLPMLCHFK-AGIFFFFGGLVLIM  327 (330)
Q Consensus       283 r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~  327 (330)
                      ++...+..+....+|+.++|.+.|.+.|+.+ .+.|.+.+.+.++.
T Consensus       319 ~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~  364 (381)
T PRK03633        319 LVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIY  364 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            8888888888888999999999999999988 46666666555543

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.91  E-value=2.6e-23  Score=175.61  Aligned_cols=296  Identities=13%  Similarity=0.150  Sum_probs=179.9

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHhhcccccccc------------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIF-GRLLLGVGIGFGNQ------------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~r~l~G~~~g~~~~------------------------   56 (330)
                      ++.|+++||+|||++++.+.++..+++++++++++++.+++ .|+++|++.+...+                        
T Consensus        72 ~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~r~~a~g~~~~~  151 (455)
T TIGR00892        72 PISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFYRRRPLANGLAMAG  151 (455)
T ss_pred             HHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHhhHHHHHHHHHhc
Confidence            57899999999999999999999999999999999988865 57999999886533                        


Q ss_pred             --------------ccCccchHHHHHhhhHHHHHHHHHHhhc-CCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHH
Q 043907           57 --------------IKGGWGWRISLAMAAAPASILTIGAIFL-PETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDL  121 (330)
Q Consensus        57 --------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~-pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  121 (330)
                                    +.+.+|||+.|++.++..++..+..+++ |+.+..  ++.+ .++.    +...+.++.+++  + 
T Consensus       152 ~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~--~~~~-~~~~----~~~~~~~~~~~~--~-  221 (455)
T TIGR00892       152 SPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQ--RVSK-SKSK----EGLPPDGSTKKL--S-  221 (455)
T ss_pred             ccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCccc--cccc-cccc----ccCCCCCccccc--c-
Confidence                          4455799999999887766555444443 322210  0000 0000    000000000000  0 


Q ss_pred             HHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHH
Q 043907          122 IRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAII  201 (330)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  201 (330)
                      .+...++..+..++ +.++++    .+.......+....+......+.|.+.++.|+++.+.+ ...+..+++.++++++
T Consensus       222 ~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~  295 (455)
T TIGR00892       222 KKSTAEKINRFLDF-SLFTHR----GFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAA-FLLSIIGFVDIFARPS  295 (455)
T ss_pred             ccchhhhhhhhcch-HHhcCc----hHHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHH
Confidence            00000000000011 233332    22223333333334445556677888888899988888 8888899999999999


Q ss_pred             HHHHHHHh--CcchhhhHhh--HHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccc
Q 043907          202 SMILADKF--GRKVLFLVGG--MQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEI  277 (330)
Q Consensus       202 ~g~l~d~~--grr~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  277 (330)
                      .+++.||.  ++|+....+.  ...+++.+.....             ++.+...+...+.+.+.+.. .+....++.|.
T Consensus       296 ~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~-------------~~~~~~~i~~~~~G~~~g~~-~~~~~~~~~~~  361 (455)
T TIGR00892       296 CGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALA-------------GDYTGLVIYCIFFGLSFGSV-GALLFEVLMDL  361 (455)
T ss_pred             HHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHh-------------chHHHHHHHHHHHHHHhchH-HHHHHHHHHHH
Confidence            99999973  3333333222  2222222222111             23333344444444444433 33445566799


Q ss_pred             cchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc-c-hhHHHHHHHHHHh
Q 043907          278 FPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK-A-GIFFFFGGLVLIM  327 (330)
Q Consensus       278 ~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~-~~~~~~~~~~~~~  327 (330)
                      +|+++++++.|+.+....+++.++|.+.+.+.+..+ + ..|++.+++.+++
T Consensus       362 ~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~  413 (455)
T TIGR00892       362 VGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSA  413 (455)
T ss_pred             hhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHH
Confidence            999999999999999999999999999999999875 4 5566655554443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.91  E-value=6.5e-23  Score=174.05  Aligned_cols=280  Identities=14%  Similarity=0.055  Sum_probs=163.6

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ-------------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~-------------------------   56 (330)
                      ++.|+++||+|||+++..+.++++++.+++++++++..+++.|+++|++.+...+                         
T Consensus        89 ~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~  168 (476)
T PLN00028         89 LAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWG  168 (476)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999998875332                         


Q ss_pred             -------------c----cC-----ccchHHHHHhhhHHHHHHHHHHhhcC-CCchhhhccCCcHHHHHHHHHHHhcccc
Q 043907           57 -------------I----KG-----GWGWRISLAMAAAPASILTIGAIFLP-ETPNSKIQRSDDHQKAQKMLQRIRGISD  113 (330)
Q Consensus        57 -------------~----~~-----~~~wr~~~~~~~~~~~~~~~~~~~~p-esp~~~~~~~~~~~~a~~~~~~~~~~~~  113 (330)
                                   +    .+     ..|||+.|++.+++.++..+..++++ +.|+     ++ .++.++          
T Consensus       169 ~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~-----~~-~~~~~~----------  232 (476)
T PLN00028        169 NLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPD-----GN-YRELKK----------  232 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCC-----Cc-hhhHHh----------
Confidence                         0    01     24899999998887776655545544 3332     00 000000          


Q ss_pred             hhHHHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHH
Q 043907          114 VKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAG  192 (330)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~  192 (330)
                               +...++++....+++.++++..   + ...+..+...........+.|.++ ++.|++..+++ ...+...
T Consensus       233 ---------~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~-~~~~~~~  298 (476)
T PLN00028        233 ---------SGTMPKDSFSKVLRYGVTNYRT---W-ILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAG-AIAASFG  298 (476)
T ss_pred             ---------cCccccccHHHHHHHHHcCchh---H-HHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHH-HHHHHHH
Confidence                     0000000001122333322221   1 122222222233344556677776 45699988888 8888999


Q ss_pred             HHHHHHHHHHHHHHHHhCcch-------hhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccc
Q 043907          193 GMGTVLAIISMILADKFGRKV-------LFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYS  265 (330)
Q Consensus       193 ~~~~~~~~~~g~l~d~~grr~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (330)
                      ++..++.++.|+++||++||+       .......+.++..+.+..            . .+.........++..+....
T Consensus       299 ~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~------------~-~~~~~~~~~~~l~~~~~~~~  365 (476)
T PLN00028        299 LMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGR------------A-NSLGAAIVVMILFSIFVQAA  365 (476)
T ss_pred             HHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcc------------c-chHHHHHHHHHHHHHHHHHh
Confidence            999999999999999998762       111111111111111111            1 12222222222222222222


Q ss_pred             cccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHHHHHHHh
Q 043907          266 WGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFGGLVLIM  327 (330)
Q Consensus       266 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~  327 (330)
                      .+ ..+.+..|..| +.||++.|+.+..+.+++.+++.+.+ ..+..++ ..|++.+++.+++
T Consensus       366 ~~-~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~  425 (476)
T PLN00028        366 CG-ATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIAC  425 (476)
T ss_pred             hh-hhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHH
Confidence            22 23444456544 78999999998888888888887654 1122233 4565555554444

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.91  E-value=1.5e-23  Score=172.31  Aligned_cols=260  Identities=22%  Similarity=0.348  Sum_probs=172.5

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ-------------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~-------------------------   56 (330)
                      ++.|+++||+|||+++..+.++.+++.++..+++|++.+++.|+++|++.+...+                         
T Consensus        50 ~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  129 (352)
T PF07690_consen   50 PFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAG  129 (352)
T ss_dssp             HHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccch
Confidence            5789999999999999999999999977777778888999999999999988776                         


Q ss_pred             --------------ccCccchHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHH
Q 043907           57 --------------IKGGWGWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDL  121 (330)
Q Consensus        57 --------------~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  121 (330)
                                    +.+..+||+.|++.++..++..+. ..+++|+|+...++++ .++                +    
T Consensus       130 ~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~-~~~----------------~----  188 (352)
T PF07690_consen  130 FSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESP-KES----------------E----  188 (352)
T ss_dssp             HHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SS-TTT----------------T----
T ss_pred             hhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhcccccccccc-ccc----------------c----
Confidence                          556789999999988887776654 3455555432111111 000                0    


Q ss_pred             HHhccccccCcc-chHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHH-HHhcCCC-CchhhHHHHHHHHHHHHHH
Q 043907          122 IRASSTSKSITQ-PFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVL-FRTLKLG-ESTSLLLSAVVAGGMGTVL  198 (330)
Q Consensus       122 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~-~~~~~~~~~~~~~~~~~~~  198 (330)
                          ++++++.. .+++.++++..+    ......+...........+.|.+ .+..|.+ ..+.+ .......+...++
T Consensus       189 ----~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~  259 (352)
T PF07690_consen  189 ----SKKPKPLKPGFKSLFKNPVLW----ILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAG-LLFSIFGIVGIIG  259 (352)
T ss_dssp             ------HHHCCCH-CTHHHHHHCCH----HHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHH-HHHHHHHHHHHHH
T ss_pred             ----cccccccccccccccccchhh----hhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHH-HHHHHHHHHHHHH
Confidence                00011111 244444443332    12222222223345577788887 4677888 56777 7788889999999


Q ss_pred             HHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccccccccccccccccc
Q 043907          199 AIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIF  278 (330)
Q Consensus       199 ~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  278 (330)
                      .++.+++.||+++|+..........+..+.+.....          ..+.........+.+.+.+.. .+....+..|..
T Consensus       260 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~  328 (352)
T PF07690_consen  260 SLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPF----------SSSPVWLIIALFLIGFGFGIV-FPILFSLIQELV  328 (352)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHH----------HCHHHHHHHHHHHHHHHHHHH-CHHHHHHHHCCC
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhC
Confidence            999999999999988777766666665555443321          112233333334444443333 345566778999


Q ss_pred             chhhhhhhhhHHHHHHHHHHHHHH
Q 043907          279 PLEIRSAGQSITVAVNFVFTFLTA  302 (330)
Q Consensus       279 p~~~r~~~~g~~~~~~~~~~~~~~  302 (330)
                      |+++||++.|+.+....+++.++|
T Consensus       329 ~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  329 PPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCC
Confidence            999999999999999999999887

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.90  E-value=6.3e-22  Score=163.98  Aligned_cols=274  Identities=14%  Similarity=0.102  Sum_probs=182.5

Q ss_pred             cchhhhhhhhchhHHH----HHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc---------------------
Q 043907            2 LIASSVTRAIGRKVSI----LIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ---------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~---------------------   56 (330)
                      +++|+++||+|||+..    ..+..+..+  ..+..+++++.+++.|.++|.+.+...+                     
T Consensus        57 ~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~~~~~~~~~g~~~  134 (382)
T TIGR00902        57 LFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTWQKQFGLDYGKVR  134 (382)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHcCCCccHHH
Confidence            5789999999985433    222222222  2444678999999999999988776555                     


Q ss_pred             ----------------ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHH
Q 043907           57 ----------------IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELND  120 (330)
Q Consensus        57 ----------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  120 (330)
                                      +.+.+|||..|.+.....++.. ..+.++|+++   ++++ .+                     
T Consensus       135 ~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~-~~~~~~~~~~---~~~~-~~---------------------  188 (382)
T TIGR00902       135 LIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFML-IGFLIKPTIP---PKDA-IP---------------------  188 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH-HHHHcCCCCC---CCcc-cc---------------------
Confidence                            5556799999887655433322 2333444321   0000 00                     


Q ss_pred             HHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHH
Q 043907          121 LIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAI  200 (330)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  200 (330)
                           ++++++..+.++.+|++..+    ...+..+...........+.|.+.++.|.++.+.+ .......+..+++..
T Consensus       189 -----~~~~~~~~~~~~~l~~~~~~----~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g-~l~~~~~~~~i~~~~  258 (382)
T TIGR00902       189 -----EDESQGDSAFIALLKNPMNL----RFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATG-LLWGIGVLAEIIIFA  258 (382)
T ss_pred             -----ccccccchhHHHHHcChHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHH-HHHHHHHHHHHHHHH
Confidence                 00001122345555443222    22222233334455666788888888999999998 788889999999999


Q ss_pred             HHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccch
Q 043907          201 ISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPL  280 (330)
Q Consensus       201 ~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~  280 (330)
                      +.+++.||+|+|+.+..+.+...+....+...             ++.+.......+-+..++....+ ...++.+. |+
T Consensus       259 ~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~-------------~~~~~~~~~q~l~g~~~~~~~~~-~~~~i~~~-~~  323 (382)
T TIGR00902       259 FSNKLFQNCSARDLLLISAIACVGRWAIIGAI-------------EAFPLIFLLQILHCGTFAVCHLA-AMRYIAAQ-PG  323 (382)
T ss_pred             HhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH-------------hhHHHHHHHHHHHHHHHHHHHHH-HHHHHHhC-CH
Confidence            99999999999999998888888887766543             44454555555555555554443 45566777 99


Q ss_pred             hhhhhhhhHHHH-HHHHHHHHHHHhhhhHHhhccchhHHHHHHHHHHhh
Q 043907          281 EIRSAGQSITVA-VNFVFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIMT  328 (330)
Q Consensus       281 ~~r~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  328 (330)
                      ++|++++++.+. ...++..+++.+.|.+.|+.|...|+..+++.+++.
T Consensus       324 ~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~~~~~~~~~~~~~~~  372 (382)
T TIGR00902       324 SEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGAGTFVFMAIIAAAAF  372 (382)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            999999999864 566889999999999999998777777777666543

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK10504 putative transporter; Provisional

Probab=99.90  E-value=7e-22  Score=168.55  Aligned_cols=290  Identities=13%  Similarity=0.166  Sum_probs=184.3

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ-------------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~-------------------------   56 (330)
                      +++|+++||+|||+++..+..+.+++.+.++++++++.+++.|+++|++.+...+                         
T Consensus        63 ~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (471)
T PRK10504         63 PASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLP  142 (471)
T ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999988765                         


Q ss_pred             --------------ccCccchHHHHHhhhHHHHHHHHHH-hhcCCCchhhhccCCcHHHHHHHHHH---------Hhccc
Q 043907           57 --------------IKGGWGWRISLAMAAAPASILTIGA-IFLPETPNSKIQRSDDHQKAQKMLQR---------IRGIS  112 (330)
Q Consensus        57 --------------~~~~~~wr~~~~~~~~~~~~~~~~~-~~~pesp~~~~~~~~~~~~a~~~~~~---------~~~~~  112 (330)
                                    +.+..+||+.|.+......+..+.. ...|+.+.   ++.+ .|........         ..+.+
T Consensus       143 ~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~---~~~r-~~~~~~~~~~~~~~~~~~~~~~~~  218 (471)
T PRK10504        143 GQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTM---QTRR-FDLSGFLLLAVGMATLTLALDGSK  218 (471)
T ss_pred             HHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccc---cCCC-CChHHHHHHHHHHHHHHHHHhcCC
Confidence                          4456799999998876665554443 33555432   1122 2221111000         00000


Q ss_pred             c---hhHHHH------------HHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH-hc
Q 043907          113 D---VKAELN------------DLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFR-TL  176 (330)
Q Consensus       113 ~---~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  176 (330)
                      .   ......            ...++ ++.+++..+. ++++++.....    ....+....+......+.|++++ ..
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~l~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~  292 (471)
T PRK10504        219 GLGLSPLAIAGLVAVGVVALLLYLLHA-RNNNRALFSL-KLFRTRTFSLG----LAGSFAGRIGSGMLPFMTPVFLQIGL  292 (471)
T ss_pred             cCCcchHHHHHHHHHHHHHHHHHHHHH-hcCCCCccCH-HHhcccchHHH----HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            0   000000            00000 0111111222 34444333322    22222222334555667788887 47


Q ss_pred             CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHH
Q 043907          177 KLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVC  256 (330)
Q Consensus       177 g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (330)
                      |.++.+.+ +......+...++.++.+++.||+|||+.+..+..+..+....+....          .....+.......
T Consensus       293 g~~~~~~g-~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~  361 (471)
T PRK10504        293 GFSPFHAG-LMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVA----------LLGWYYLLPFVLF  361 (471)
T ss_pred             CCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhcc----------ccccHHHHHHHHH
Confidence            88888888 788888888888889999999999999999888877776655554321          1121222222222


Q ss_pred             HhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907          257 LCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK  313 (330)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g  313 (330)
                      ..+.+.+....+ ...+..+..|++.++++.++.++...++..+++.+.+.+.+..+
T Consensus       362 ~~g~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g  417 (471)
T PRK10504        362 LQGMVNSTRFSS-MNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFG  417 (471)
T ss_pred             HHHHHHHHHHHH-HHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            222333333333 34555688999999999999999999999999999999887765

>PRK11043 putative transporter; Provisional

Probab=99.90  E-value=6e-22  Score=165.52  Aligned_cols=262  Identities=16%  Similarity=0.133  Sum_probs=172.0

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ-------------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~-------------------------   56 (330)
                      +++|+++||+|||+.+..+..+..++.+.+.++++++.+++.|+++|++.+...+                         
T Consensus        59 ~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (401)
T PRK11043         59 LLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPL  138 (401)
T ss_pred             HhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999998765443                         


Q ss_pred             --------------ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHHH
Q 043907           57 --------------IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLI  122 (330)
Q Consensus        57 --------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  122 (330)
                                    +.+..+||+.|++.++..++..+..++++|+++   ++++  ++                      
T Consensus       139 ~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~----------------------  191 (401)
T PRK11043        139 VALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPSKK---ARKQ--SQ----------------------  191 (401)
T ss_pred             HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCCCC---cccc--ch----------------------
Confidence                          334579999998888777666655555665532   0000  00                      


Q ss_pred             HhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHH
Q 043907          123 RASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIIS  202 (330)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  202 (330)
                              ++.++++.++++..+.......    ...........+.|.+.++.|+++.+.+ .......++..++..+.
T Consensus       192 --------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~p~~~~~~g~s~~~~g-~~~~~~~~~~~~g~~~~  258 (401)
T PRK11043        192 --------DALTFKQLLKSKTYLGNVLIFA----ACSAAFFAWLTGSPFILEQMGYSPADIG-LSYVPQTIAFLVGGYGC  258 (401)
T ss_pred             --------HHHHHHHHHcChhHHHHHHHHH----HHHHHHHHHHHHhHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHH
Confidence                    0112334443322221111111    1112234455677888888899888888 77777788889999999


Q ss_pred             HHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhh
Q 043907          203 MILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEI  282 (330)
Q Consensus       203 g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~  282 (330)
                      +++.||+++|+..........++.+.+......        .....+.........+.+.+... +.......|..| ++
T Consensus       259 ~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~  328 (401)
T PRK11043        259 RAALQKWGGEQLLPWLLVLFAVSVIAIWLASLL--------SHPSLVPLLIPFCVMAAANGAIY-PIVVAQALRPFP-QA  328 (401)
T ss_pred             HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHh--------ccCcHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhCc-cc
Confidence            999999999987666555555444433222110        11222222333333333333332 333334346666 57


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907          283 RSAGQSITVAVNFVFTFLTAQTFLPMLCHFK  313 (330)
Q Consensus       283 r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g  313 (330)
                      |+++.|+.+..+..++..++.+.+.+.+...
T Consensus       329 ~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~  359 (401)
T PRK11043        329 TGKAAALQNTLQLGLCFLASLLVSALISTPL  359 (401)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHccCCCh
Confidence            9999999999999999999999998877543

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.90  E-value=1.1e-21  Score=161.90  Aligned_cols=273  Identities=15%  Similarity=0.099  Sum_probs=173.2

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHhhcccccccc--------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSA-----FNIYMLIFGRLLLGVGIGFGNQ--------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~r~l~G~~~g~~~~--------------------   56 (330)
                      ++.|++.||+|+|+++.++.+++++.++..+++     ++++.+++.|++.|++ |...+                    
T Consensus        88 ip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~G  166 (462)
T PRK15034         88 VPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALG  166 (462)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHH
Confidence            356999999999999999999999999999987     8999999999999998 44444                    


Q ss_pred             --------------------c-----c------------CccchHHHHHhhhHHHHHHHHHHhh-cCCCchhhhccCCcH
Q 043907           57 --------------------I-----K------------GGWGWRISLAMAAAPASILTIGAIF-LPETPNSKIQRSDDH   98 (330)
Q Consensus        57 --------------------~-----~------------~~~~wr~~~~~~~~~~~~~~~~~~~-~pesp~~~~~~~~~~   98 (330)
                                          +     .            +..+||...++..++.++..+..++ .+|.|.         
T Consensus       167 i~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~---------  237 (462)
T PRK15034        167 INGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS---------  237 (462)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---------
Confidence                                0     0            1223555554444444443333333 222110         


Q ss_pred             HHHHHHHHHHhcccchhHHHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCC
Q 043907           99 QKAQKMLQRIRGISDVKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKL  178 (330)
Q Consensus        99 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  178 (330)
                                                   ++...++..+.+|++..    +.+.+..+..+.++..+..+.|.+.++ .+
T Consensus       238 -----------------------------~~~~~~~~~~vlk~~~~----Wllslly~~tFG~fvg~s~~lp~~~~~-~~  283 (462)
T PRK15034        238 -----------------------------SRASIADQLPVLQRLHL----WLLSLLYLATFGSFIGFSAGFAMLAKT-QF  283 (462)
T ss_pred             -----------------------------cccCHHHHHHHhCCCch----hHHHHHHHHHHHHHHHHHHHHHHHHHH-Hc
Confidence                                         00001123334444332    334444455566677778888888865 34


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHh
Q 043907          179 GESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLC  258 (330)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (330)
                      +..... .......+...+.++++|+++||+|+|+++..+...+.++.........    .   .+..+.+.........
T Consensus       284 ~~~~~l-~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp----~---~~~~~~~~~~~~~~~l  355 (462)
T PRK15034        284 PDVNIL-RLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLP----G---TGSGNFIAFYAVFMGL  355 (462)
T ss_pred             ChHHHH-HHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhc----c---ccccHHHHHHHHHHHH
Confidence            433333 3345567888899999999999999999999888777766654433320    0   0112333333333333


Q ss_pred             hcccccccccccccccccccch---------------------hhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc--ch
Q 043907          259 SSGYCYSWGPLAWLVPSEIFPL---------------------EIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK--AG  315 (330)
Q Consensus       259 ~~~~~~~~~~~~~~~~~e~~p~---------------------~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g--~~  315 (330)
                      ....+.+.+++ +-++.+.+|+                     ++-|.+.|+....+.+|+++.|.+.+...+..|  ..
T Consensus       356 ~~~~G~gngsv-fk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~  434 (462)
T PRK15034        356 FLTAGLGSGST-FQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVG  434 (462)
T ss_pred             HHHhcccchHH-HHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHH
Confidence            34445555433 4444666664                     256788999999999999999999999988877  24


Q ss_pred             hHHHHHHHHHHh
Q 043907          316 IFFFFGGLVLIM  327 (330)
Q Consensus       316 ~~~~~~~~~~~~  327 (330)
                      .++.+.+..+++
T Consensus       435 ~~~~~~~~~~~~  446 (462)
T PRK15034        435 AMKVFLIFYIVC  446 (462)
T ss_pred             HHHHHHHHHHHH
Confidence            555555555544

>TIGR00896 CynX cyanate transporter

Probab=99.90  E-value=7.2e-22  Score=162.34  Aligned_cols=256  Identities=16%  Similarity=0.103  Sum_probs=164.5

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ-------------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~-------------------------   56 (330)
                      ++.|+++||+|||+++.++.++..++.+.+ .+++.+.+++.|++.|++.+...+                         
T Consensus        53 ~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (355)
T TIGR00896        53 PLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAIINVLLPSLIKRDFPQRVGLMTGLYSMAL  131 (355)
T ss_pred             HhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHhccchHHHHHhCcchhhHHHHHHHHHH
Confidence            578999999999999999999988888877 778999999999999999887544                         


Q ss_pred             -------------ccCcc--chHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHH
Q 043907           57 -------------IKGGW--GWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDL  121 (330)
Q Consensus        57 -------------~~~~~--~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  121 (330)
                                   +.+..  +||+.|...++..++..  ..++||.++    +++                         
T Consensus       132 ~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~--~~~~~~~~~----~~~-------------------------  180 (355)
T TIGR00896       132 MGGAALAAAATVPLAQHSGGHWQQALAWWALPALLAL--LAWIPQVRR----RVA-------------------------  180 (355)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH--HHHhhhhcc----ccC-------------------------
Confidence                         22222  38877766554333222  223344321    000                         


Q ss_pred             HHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHH
Q 043907          122 IRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAII  201 (330)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  201 (330)
                          ++++..+.+.++.++++.    .+...+........+.....+.|.++++.|.+..+.+ ...+...++.++++++
T Consensus       181 ----~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g-~~~~~~~~~~i~~~~~  251 (355)
T TIGR00896       181 ----ANQTTTRLTPVRIWRSPL----AWQVTVFFGLQSGLYYSLIGWLPAILISHGASAATAG-SLLALMQLAQAASALL  251 (355)
T ss_pred             ----CCCCCCCCCCchhhcCHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHh
Confidence                000000112233333322    2222222222334445666788999988899988888 8888999999999999


Q ss_pred             HHHHHHHh-CcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccc-cccc
Q 043907          202 SMILADKF-GRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPS-EIFP  279 (330)
Q Consensus       202 ~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~p  279 (330)
                      .|++.||+ +||+....+..+..++.+.+.+.           + ..... . ...+.+.+.+... +....... +..+
T Consensus       252 ~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~~-~-~~~l~g~~~g~~~-~~~~~~~~~~~~~  316 (355)
T TIGR00896       252 IPALARRVKDQRGIVAVLAVLQLVGLCGLLFA-----------P-MHGLW-A-WALVLGLGQGGAF-PLALTLIGLRSRQ  316 (355)
T ss_pred             HHHHHhhhccchHHHHHHHHHHHHHHHHHHHh-----------h-hhHHH-H-HHHHHHHhhhhHh-HHHHHHHHHhccC
Confidence            99999999 45666666666666665555442           1 11111 1 2233333433222 23223333 4445


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907          280 LEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK  313 (330)
Q Consensus       280 ~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g  313 (330)
                      ++.+++..++.+...+++..++|.+.|.+.|+.|
T Consensus       317 ~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       317 AAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            6778999999999999999999999999999887

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.89  E-value=1.2e-21  Score=162.53  Aligned_cols=257  Identities=16%  Similarity=0.152  Sum_probs=159.9

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ-------------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~-------------------------   56 (330)
                      +++|+++||+|||+++..+.++.+++.+.+.++++++.+.+.|+++|++.+...+                         
T Consensus        44 ~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (377)
T PRK11102         44 LFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLV  123 (377)
T ss_pred             HhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999887654                         


Q ss_pred             --------------ccCccchHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHH
Q 043907           57 --------------IKGGWGWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDL  121 (330)
Q Consensus        57 --------------~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  121 (330)
                                    +.+..+||+.|++.++..++..+. .++.||+++.   +++ .+.                     
T Consensus       124 ~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~---------------------  178 (377)
T PRK11102        124 MTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETLPK---ERR-QPF---------------------  178 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccCcc---ccc-CCC---------------------
Confidence                          344568999998877766665444 4557776421   000 000                     


Q ss_pred             HHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHHHHH
Q 043907          122 IRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTVLAI  200 (330)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~  200 (330)
                           +.++...++++.++++..   . ...+.......+......+.|.++ +..|+++.+.+ .......+..+++.+
T Consensus       179 -----~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~  248 (377)
T PRK11102        179 -----HLRTTIRNFASLFRHKRV---L-GYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFG-YYFALNIVFLFVMTI  248 (377)
T ss_pred             -----ChHHHHHHHHHHHcChHH---H-HHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHH
Confidence                 000001123333433221   1 122222222233344445556555 55789988888 888889999999999


Q ss_pred             HHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccch
Q 043907          201 ISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPL  280 (330)
Q Consensus       201 ~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~  280 (330)
                      +.+++.||+|||+.+..+.....+..+.+......         +...+...........+.+.. .+.......|..| 
T Consensus       249 ~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-  317 (377)
T PRK11102        249 INSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALL---------DLGFWALVVGVAAFVGCVSMI-SSNAMAVILDEFP-  317 (377)
T ss_pred             HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHh-hHHHHHHHhcccc-
Confidence            99999999999999888776654443333222100         112222222222222222222 2222334467666 


Q ss_pred             hhhhhhhhHHHHHHH-HHHHHHHHh
Q 043907          281 EIRSAGQSITVAVNF-VFTFLTAQT  304 (330)
Q Consensus       281 ~~r~~~~g~~~~~~~-~~~~~~~~~  304 (330)
                      +.++++.++.+.... ++..+++.+
T Consensus       318 ~~~g~~~~~~~~~~~~~g~~~g~~~  342 (377)
T PRK11102        318 HMAGTASSLAGTLRFGIGAIVGALL  342 (377)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHH
Confidence            789999998877654 334444443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.89  E-value=1.9e-21  Score=162.13  Aligned_cols=281  Identities=14%  Similarity=0.092  Sum_probs=164.9

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHh---hh-----hhHHHHHHHHHHhhcccccccc-----------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGG---SA-----FNIYMLIFGRLLLGVGIGFGNQ-----------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~---~~-----~~~~~~~~~r~l~G~~~g~~~~-----------------   56 (330)
                      ++.|+++||+|||+.++.+....+++.....   +.     +....+++.|++.|++.+...+                 
T Consensus        56 ~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  135 (396)
T TIGR00882        56 PLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRNSNFEY  135 (396)
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhhccccc
Confidence            5789999999999999887776655443221   11     1234456678888877665544                 


Q ss_pred             -------------------ccCccchHHHHHhhhHHHHHHHHHHhh-cCCCchhhhccCCcHHHHHHHHHHHhcccchhH
Q 043907           57 -------------------IKGGWGWRISLAMAAAPASILTIGAIF-LPETPNSKIQRSDDHQKAQKMLQRIRGISDVKA  116 (330)
Q Consensus        57 -------------------~~~~~~wr~~~~~~~~~~~~~~~~~~~-~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~  116 (330)
                                         .....+||.+|++.++..++..+..+. .||+|+        +++.++             
T Consensus       136 g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~-------------  194 (396)
T TIGR00882       136 GKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALILMLLLMFAKPKAPS--------SATVAN-------------  194 (396)
T ss_pred             chhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHhCCCCch--------hhhhhc-------------
Confidence                               222368999999888777665555444 444332        100000             


Q ss_pred             HHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhc----CCCCchhhHHHHHHHH
Q 043907          117 ELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTL----KLGESTSLLLSAVVAG  192 (330)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~  192 (330)
                          . .+.++++++.++.++.++++..+....    ..+.....+.....+.+.+.++.    +.+....+ ...+...
T Consensus       195 ----~-~~~~~~~~~~~~~~~~l~~~~~~~~~l----~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g-~~~~~~~  264 (396)
T TIGR00882       195 ----A-LGANASAFSLKLALELFRQRKFWMFVL----YVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFG-YVTTMGE  264 (396)
T ss_pred             ----c-cccccCCCCHHHHHHHHcCCcHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhccccccchHHHH-HHHHHHH
Confidence                0 000011111223455555433222221    11111222233333455555432    34444555 6777788


Q ss_pred             HHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccccccccccc
Q 043907          193 GMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWL  272 (330)
Q Consensus       193 ~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (330)
                      +...++....+++.||+|||+.+..+..+.++........             .+.+.......+.+.+..... .....
T Consensus       265 i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~-------------~~~~~~~~~~~l~g~~~~~~~-~~~~~  330 (396)
T TIGR00882       265 LLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA-------------TTALEVVILKMLHAFEVPFLL-VGCFK  330 (396)
T ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc-------------CChHHHHHHHHHHHHHHHHHH-HHHHH
Confidence            8889999999999999999999888877777655544332             223333333333332222111 12233


Q ss_pred             ccccccchhhhhhhhhH-HHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHHHHHHHh
Q 043907          273 VPSEIFPLEIRSAGQSI-TVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFGGLVLIM  327 (330)
Q Consensus       273 ~~~e~~p~~~r~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~  327 (330)
                      +..|..|++.+++..+. .+....+++.+++.+.|.+.|..|+ ..|.+.+++.++.
T Consensus       331 ~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~  387 (396)
T TIGR00882       331 YITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLF  387 (396)
T ss_pred             HHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHH
Confidence            44566778888887766 5678899999999999999999884 6666666655443

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.89  E-value=1.3e-21  Score=166.44  Aligned_cols=281  Identities=12%  Similarity=0.048  Sum_probs=175.9

Q ss_pred             cchhhhhhhh-----chhHH-HHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHhhcccccccc----------------
Q 043907            2 LIASSVTRAI-----GRKVS-ILIGGVAFLADSAYGGSA---FNIYMLIFGRLLLGVGIGFGNQ----------------   56 (330)
Q Consensus         2 ~~~g~l~d~~-----Grk~~-l~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~g~~~~----------------   56 (330)
                      +++|+++||+     ||||. +..+.+..+++....++.   ++++.+.+.|++.|++.+...+                
T Consensus        63 ~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg  142 (491)
T PRK11010         63 FLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERG  142 (491)
T ss_pred             HHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhH
Confidence            5789999999     99986 667777777777777665   4688899999999988876654                


Q ss_pred             -----------------------ccC-ccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhccc
Q 043907           57 -----------------------IKG-GWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGIS  112 (330)
Q Consensus        57 -----------------------~~~-~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~  112 (330)
                                             +.+ ..|||..|++.++..++..+..++.||+++..  +++ .+.            
T Consensus       143 ~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~--~~~-~~~------------  207 (491)
T PRK11010        143 AGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLAPEPTDTI--PVP-KTL------------  207 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc--ccc-cch------------
Confidence                                   334 46999999998877776666666678865310  000 000            


Q ss_pred             chhHHHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHH-HhcCCCCchhhHHHH-HH
Q 043907          113 DVKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLF-RTLKLGESTSLLLSA-VV  190 (330)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~-~~  190 (330)
                                     +++...++++.++++..+.......+.    ..+......+.+.++ ++.|++..+.+ ... ..
T Consensus       208 ---------------~~~~~~~l~~~~~~~~~~~~ll~~~l~----~~~~~~~~~~~~~~l~~~~G~s~~~~g-~~~~~~  267 (491)
T PRK11010        208 ---------------EQAVVAPLRDFFGRNNAWLILLLIVLY----KLGDAFAMSLTTTFLIRGVGFDAGEVG-LVNKTL  267 (491)
T ss_pred             ---------------hhhHHHHHHHHHcCcCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHH
Confidence                           000012345555443333222222111    122233334445554 56899999888 665 45


Q ss_pred             HHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccccccccc
Q 043907          191 AGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLA  270 (330)
Q Consensus       191 ~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (330)
                      ..++.+++.++.|+++||+|+|+.+..+.....+..+.+.....         ..++.+.......+.....+.+.. ..
T Consensus       268 g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~---------~~~~~~~l~~~~~l~~~~~g~~~~-~~  337 (491)
T PRK11010        268 GLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSI---------TDKNLYSMGAAVFFENLCGGMGTA-AF  337 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh---------ccccHHHHHHHHHHHHHHHHHHHH-HH
Confidence            56799999999999999999998777665555544433322110         011222222222221112222222 22


Q ss_pred             ccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccch-hHHHHHHHHHHh
Q 043907          271 WLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAG-IFFFFGGLVLIM  327 (330)
Q Consensus       271 ~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~  327 (330)
                      ..+..+..|++.+++..|+.+....++..+++.+.|.+.|..|+. .|.+.+++++.+
T Consensus       338 ~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~  395 (491)
T PRK11010        338 VALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPG  395 (491)
T ss_pred             HHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence            455568888889999999999999999999999999999998864 444445444443

>TIGR00889 2A0110 nucleoside transporter

Probab=99.89  E-value=2.8e-21  Score=161.42  Aligned_cols=279  Identities=11%  Similarity=0.053  Sum_probs=172.6

Q ss_pred             cchhhhhhhhch-hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc------------------------
Q 043907            2 LIASSVTRAIGR-KVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Gr-k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------   56 (330)
                      +++|.++||+|| |+++.++.++.++......+.++++.+.+.|++.|++.+...+                        
T Consensus        56 ~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~  135 (418)
T TIGR00889        56 ILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPI  135 (418)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCe
Confidence            578999999965 8888989999988888888889999999999998886543311                        


Q ss_pred             -----------------ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHH
Q 043907           57 -----------------IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELN  119 (330)
Q Consensus        57 -----------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  119 (330)
                                       +.....|+ +|++.++..++..+..+++||+|+-   +++ .++                   
T Consensus       136 r~~G~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~~~~~e~~~~---~~~-~~~-------------------  191 (418)
T TIGR00889       136 RVMGTIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVFALTLPDIPVA---KST-AKM-------------------  191 (418)
T ss_pred             eeehhHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHHhcCCCCCCC---ccc-ccc-------------------
Confidence                             21111233 3555555555544455668887631   111 000                   


Q ss_pred             HHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCC--------chhhHHHHHHH
Q 043907          120 DLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGE--------STSLLLSAVVA  191 (330)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------~~~~~~~~~~~  191 (330)
                            +.++..+.+.++.+|++.....+...++.    .........+.+.+.++.|.++        ...+ ...+..
T Consensus       192 ------~~~~~~~~~~~~~~k~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g-~~~~~~  260 (418)
T TIGR00889       192 ------SIKVMLGLDAFILFKNKRMAIFFFFSMLL----GAPLQITNIFGNGFLHEFGRNPEFADSFVVKNAS-IWMSLS  260 (418)
T ss_pred             ------CHHHHhhhhHHHHhcCCCeeeHHHHHHHH----HhHHHHHHHhHHHHHHHhcccccccchhhhhhHH-HHHHHH
Confidence                  00000011233444443332222222221    1222334455566676666543        3446 777888


Q ss_pred             HHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcc-hhHHHHHHHHHhhccccccccccc
Q 043907          192 GGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEG-YAYLILVLVCLCSSGYCYSWGPLA  270 (330)
Q Consensus       192 ~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  270 (330)
                      .+..+++.++.+++.||+|||+.+..+.+...+....+....          +.. ..+.......+.+.+.+.. .+..
T Consensus       261 ~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~----------~~~~~~~~l~l~~~l~g~~~~~~-~~~~  329 (418)
T TIGR00889       261 QFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGD----------PEYFGYALLFLSMIVYGCAFDFF-NISG  329 (418)
T ss_pred             HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcC----------cchhhHHHHHHHHHHHHHHHHHH-HHHH
Confidence            889999999999999999999999988887777655544320          001 1222233333343333322 3344


Q ss_pred             ccccccccchhhhhhhhhHHH-HHHHHHHHHHHHhhhhHHhhcc------c-hhHHHHHHHHHH
Q 043907          271 WLVPSEIFPLEIRSAGQSITV-AVNFVFTFLTAQTFLPMLCHFK------A-GIFFFFGGLVLI  326 (330)
Q Consensus       271 ~~~~~e~~p~~~r~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g------~-~~~~~~~~~~~~  326 (330)
                      ..++.|.+|++.|++++|+.+ ....++..++|.+.|.+.|+.|      | ..|.+.+++.++
T Consensus       330 ~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i  393 (418)
T TIGR00889       330 SVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAI  393 (418)
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence            556689999999999999997 5677899999999999999854      3 345555554444

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.89  E-value=2e-21  Score=161.56  Aligned_cols=268  Identities=14%  Similarity=0.123  Sum_probs=158.5

Q ss_pred             chhhhhhhhchhHHH-HHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907            3 IASSVTRAIGRKVSI-LIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ-------------------------   56 (330)
Q Consensus         3 ~~g~l~d~~Grk~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~-------------------------   56 (330)
                      +.|..+||+||||.+ ..+.+..+++..+.+++++++.+++.+.+.|...+...+                         
T Consensus        70 ~~~~~~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (393)
T PRK15011         70 FLAGRSDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLR  149 (393)
T ss_pred             HHHHHHhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHH
Confidence            344459999999875 456666677788888899998876655444333333332                         


Q ss_pred             ----------------ccCccchHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHH
Q 043907           57 ----------------IKGGWGWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELN  119 (330)
Q Consensus        57 ----------------~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  119 (330)
                                      +.+..|||..|++.++..++..+. .+++||+|+-   +++ .+                    
T Consensus       150 ~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~--------------------  205 (393)
T PRK15011        150 AQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKE---LPL-AT--------------------  205 (393)
T ss_pred             HHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCCC---Ccc-cc--------------------
Confidence                            445679999999888766665544 4457876530   000 00                    


Q ss_pred             HHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHHH
Q 043907          120 DLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTVL  198 (330)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~  198 (330)
                            ++.+    ..+    ++ ++..+...... ............+.|.+. ++.|+++.+.+ .......+..+++
T Consensus       206 ------~~~~----~~~----~~-~~~~~~~~~~~-~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g-~~~~~~~~~~i~~  268 (393)
T PRK15011        206 ------GTLE----APR----RN-RRDTLLLFVIC-TLMWGTNSLYIINMPLFIINELHLPEKLAG-VMMGTAAGLEIPT  268 (393)
T ss_pred             ------cccc----ccc----cc-cccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHH
Confidence                  0000    000    00 01111111111 111222344455677776 45788888877 6666767778889


Q ss_pred             HHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccccccccccccccccc
Q 043907          199 AIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIF  278 (330)
Q Consensus       199 ~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  278 (330)
                      .++.|+++||++||+.+..+.....+........             ++.+..+....+.....+...+ ....+..|..
T Consensus       269 ~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~l~~~~~g~~~~-~~~~~~~~~~  334 (393)
T PRK15011        269 MLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMA-------------HSPAILLGLQLLNAIYIGILGG-IGMLYFQDLM  334 (393)
T ss_pred             HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-------------hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhC
Confidence            9999999999999998776654444332222111             2222222222222222222212 2234457888


Q ss_pred             chhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHHHHHHH
Q 043907          279 PLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFGGLVLI  326 (330)
Q Consensus       279 p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~  326 (330)
                      |+ +|+++.++.+...+++..+++.+.+.+.|..|+ ..+++.++++++
T Consensus       335 p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~  382 (393)
T PRK15011        335 PG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIA  382 (393)
T ss_pred             CC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            85 599999999998999999999999999998885 444444444443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.89  E-value=1.3e-21  Score=154.39  Aligned_cols=280  Identities=16%  Similarity=0.173  Sum_probs=202.4

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhH---HHHHHHHHHhhcccccccc----------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNI---YMLIFGRLLLGVGIGFGNQ----------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~r~l~G~~~g~~~~----------------------   56 (330)
                      ++.|.+.||+|.|++..++.++..+.++..+++.++   +++++.+++.|++.+....                      
T Consensus        67 l~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g  146 (417)
T COG2223          67 LPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG  146 (417)
T ss_pred             HHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc
Confidence            357899999999999999999999999999998554   5999999999999987765                      


Q ss_pred             ---------------ccCccc---hHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHH
Q 043907           57 ---------------IKGGWG---WRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAE  117 (330)
Q Consensus        57 ---------------~~~~~~---wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  117 (330)
                                     +....+   ||....+..+..++..+. ++...|.|......++                     
T Consensus       147 ~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~---------------------  205 (417)
T COG2223         147 AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKP---------------------  205 (417)
T ss_pred             cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccc---------------------
Confidence                           333345   888777777666665544 4446555532110000                     


Q ss_pred             HHHHHHhccccccCc-cchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCchhhHHHHHHHHHHH
Q 043907          118 LNDLIRASSTSKSIT-QPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSAVVAGGMG  195 (330)
Q Consensus       118 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~  195 (330)
                                   .. .+++...+++    ..+.+.+.++..+.++..+..++|.+++ ++|.++.+++ .........+
T Consensus       206 -------------~~~~~~~~v~~~~----~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag-~~a~~f~~~g  267 (417)
T COG2223         206 -------------QLPAQLKAVFSNK----DTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAG-LIAFLFPLIG  267 (417)
T ss_pred             -------------cchhHHHHHhcCc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHH-HHHHHHHHHH
Confidence                         01 2344444333    3344555666667778889999999885 6899999988 8888889999


Q ss_pred             HHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccc
Q 043907          196 TVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPS  275 (330)
Q Consensus       196 ~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (330)
                      .+.++++|+++||+|.++........+.++...+.....      ......+...............+.+.+.+ +-++.
T Consensus       268 ~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~------~~~~~~~~~~~~~~~l~l~~~~G~GnGsv-fk~Ip  340 (417)
T COG2223         268 ALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLT------GFGHGGSFVVFVAVFLALFVFAGLGNGSV-FKMIP  340 (417)
T ss_pred             HHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHcccc------ccccCcchHHHHHHHHHHHHHhccCcchh-eeech
Confidence            999999999999999999999888888888777765420      00011333444444444444555565544 55667


Q ss_pred             cccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc--chhHHHHHHHHHHhh
Q 043907          276 EIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK--AGIFFFFGGLVLIMT  328 (330)
Q Consensus       276 e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~  328 (330)
                      .++|. +-|.+.|+..+.+.+|++..|...+...+..|  ...|+++..+.+++.
T Consensus       341 ~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~  394 (417)
T COG2223         341 VIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVAL  394 (417)
T ss_pred             HHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            77775 67889999999999999999999999999998  356777766666554

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.89  E-value=2.5e-21  Score=161.35  Aligned_cols=256  Identities=16%  Similarity=0.228  Sum_probs=161.0

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ-------------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~-------------------------   56 (330)
                      ++.|+++||+|||+.+..+.++..++.+.+..+++++.+++.|+++|++.+...+                         
T Consensus        56 ~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~  135 (392)
T PRK10473         56 LFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGI  135 (392)
T ss_pred             HhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999887554                         


Q ss_pred             --------------ccCccchHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHH
Q 043907           57 --------------IKGGWGWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDL  121 (330)
Q Consensus        57 --------------~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  121 (330)
                                    +.+..+||+.|++.++..++..+. .+++||+++.   +++ .++                     
T Consensus       136 ~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~-~~~---------------------  190 (392)
T PRK10473        136 TCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRPA---RAP-AAS---------------------  190 (392)
T ss_pred             HHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCc---ccC-Ccc---------------------
Confidence                          345578999998887766555444 4557776421   000 000                     


Q ss_pred             HHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHHHHH
Q 043907          122 IRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTVLAI  200 (330)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~  200 (330)
                              +..+..++.++++..........+..    ........+.|.+. ++.|+++.+.+ .......++.+++.+
T Consensus       191 --------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~  257 (392)
T PRK10473        191 --------SKPRENSESLLNRFFLSRLVITTLSV----TVILTFVNTSPVLLMEQMGFSRGEYA-IIMALTAGVSMTVSF  257 (392)
T ss_pred             --------chHHHHHHHHhCHHHHHHHHHHHHHH----HHHHHHHHhCHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHH
Confidence                    00001112222221111111111111    11223334456555 56788888877 788888999999999


Q ss_pred             HHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccch
Q 043907          201 ISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPL  280 (330)
Q Consensus       201 ~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~  280 (330)
                      +.+++.||+|||+.+..+.....++.+.+...             ...+...........+.+.+....   ...+..|.
T Consensus       258 ~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~~~g~~~~~~~~---~~~~~~~~  321 (392)
T PRK10473        258 STPFALGIFKPRTLMLTSQVLFLAAGITLALS-------------PSHAVSLFGITLICAGFSVGFGVA---MSQALGPF  321 (392)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHhHHH---HHHHhccC
Confidence            99999999999999888887777666655543             111222222222223333332221   22344454


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc
Q 043907          281 EIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA  314 (330)
Q Consensus       281 ~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~  314 (330)
                      +.|+   |.......++..+++.+.+.+.+..|+
T Consensus       322 ~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~  352 (392)
T PRK10473        322 SLRA---GVASSTLGIAQVCGSSLWIWLAAVLGI  352 (392)
T ss_pred             cccc---cHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4443   444455566777778888888877774

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.89  E-value=1.7e-21  Score=162.05  Aligned_cols=256  Identities=14%  Similarity=0.092  Sum_probs=164.6

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ-------------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~-------------------------   56 (330)
                      ++.|+++||+|||+++..+..+..++.+.+.++++++.+++.|+++|++.+...+                         
T Consensus        64 ~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  143 (400)
T PRK11646         64 IFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQ  143 (400)
T ss_pred             hhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999998876554                         


Q ss_pred             --------------ccCccchHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHH
Q 043907           57 --------------IKGGWGWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDL  121 (330)
Q Consensus        57 --------------~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  121 (330)
                                    +. .++||+.|++.++..++..+. .++.||.+.    +++ .+                      
T Consensus       144 ~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~----~~~-~~----------------------  195 (400)
T PRK11646        144 DSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKL----STV-RT----------------------  195 (400)
T ss_pred             HHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcccc----ccc-ch----------------------
Confidence                          33 579999999887765554433 344554211    000 00                      


Q ss_pred             HHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHH
Q 043907          122 IRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAII  201 (330)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  201 (330)
                              +.+.++++.++++.......    ..+...........+.|.+.++.+.++.+.+ .......+....+...
T Consensus       196 --------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g-~l~~~~~~~~~~~~~~  262 (400)
T PRK11646        196 --------PVREGMTRVLRDKRFVTYVL----TLTGYYMLAVQVMLMLPIMVNDIAGSPSAVK-WMYAIEACLSLTLLYP  262 (400)
T ss_pred             --------hhHHHHHHHHcCchHHHHHH----HHHHHHHHHHHHHHhhhhhHHhhcCCchHHH-HHHHHHHHHHHHHHHH
Confidence                    00112334443322221111    1111111122234567888877666666666 6666666666655555


Q ss_pred             HHHHHH-HhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccch
Q 043907          202 SMILAD-KFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPL  280 (330)
Q Consensus       202 ~g~l~d-~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~  280 (330)
                      .++..| |.+.++.+..+..+..++...+...             ++.+........+..+.+. ..|....++.|..|+
T Consensus       263 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~-------------~~~~~~~~~~~l~~~g~~~-~~p~~~~~~~~~~p~  328 (400)
T PRK11646        263 IARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV-------------SNLQQLFTLICLFYIGSII-AEPARETLSASLADA  328 (400)
T ss_pred             HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh-------------hhHHHHHHHHHHHHHHHHH-HHccHHHHHHhcCCc
Confidence            566655 4565666666666666655544432             2222232333333333332 223445666799999


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhc
Q 043907          281 EIRSAGQSITVAVNFVFTFLTAQTFLPMLCHF  312 (330)
Q Consensus       281 ~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  312 (330)
                      ++||++.|+.+....++..++|.+.|.+.|+.
T Consensus       329 ~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~  360 (400)
T PRK11646        329 RARGSYMGFSRLGLALGGAIGYIGGGWLFDLG  360 (400)
T ss_pred             ccchhhhhHHHHHHHHHHHhcccchHHHHHHH
Confidence            99999999999999999999999999999875

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.89  E-value=4.8e-23  Score=163.76  Aligned_cols=276  Identities=13%  Similarity=0.171  Sum_probs=165.9

Q ss_pred             CcchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc------------------------
Q 043907            1 SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------   56 (330)
Q Consensus         1 ~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------   56 (330)
                      +|++|+++|||+||+++.+|..+|.++.+.++++..+|++.++|.+.|+|.+...+                        
T Consensus        85 sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~  164 (493)
T KOG1330|consen   85 SPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYF  164 (493)
T ss_pred             HHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhh
Confidence            47899999999999999999999999999999999999999999999999999888                        


Q ss_pred             ---------------ccCcc-chHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHH
Q 043907           57 ---------------IKGGW-GWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELN  119 (330)
Q Consensus        57 ---------------~~~~~-~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  119 (330)
                                     +.+.. .|||.|...++++++..++ .++.+|++|-    .+  ||.+                 
T Consensus       165 ~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rg----a~--~~~~-----------------  221 (493)
T KOG1330|consen  165 AIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERG----AR--DEVD-----------------  221 (493)
T ss_pred             hcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcccc----cc--cccc-----------------
Confidence                           33333 3999999999988887766 4556666431    11  1100                 


Q ss_pred             HHHHhccccccCccchHHhc---ccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHH----HhcCCCCchhhHHHHHHHH
Q 043907          120 DLIRASSTSKSITQPFKNII---QRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLF----RTLKLGESTSLLLSAVVAG  192 (330)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~  192 (330)
                         .+.+..++....++|+.   +.+......+......    .....+..+.|.+.    +-.|.+.++.. +...+..
T Consensus       222 ---~~~~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~----fv~Gs~sww~p~~~~~~~~~~~~~~~~~~-ifg~vt~  293 (493)
T KOG1330|consen  222 ---GENKMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQ----FVIGSLSWWAPAFIYYSYELIGFDHNATL-IFGGVTC  293 (493)
T ss_pred             ---cCCcCCCCccchHHHHHHHHccCceeeehHHHHHHH----HhccccchhhhhHHHHHHHHhCCccccch-hhhhHHH
Confidence               00011112222333332   2222221122222222    22233444444443    33466666666 7888899


Q ss_pred             HHHHHHHHHHHHHHHHhCcc----hhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccccccc
Q 043907          193 GMGTVLAIISMILADKFGRK----VLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGP  268 (330)
Q Consensus       193 ~~~~~~~~~~g~l~d~~grr----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (330)
                      .++.+|.+++|.++||+.|+    ..........+.+.............    ....+.+..++...+.......++++
T Consensus       294 ~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~----~~~~s~~~~~il~~~g~~~~~~~~a~  369 (493)
T KOG1330|consen  294 AGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPA----FTSSSMIFGLILFLVGETISWFNWAT  369 (493)
T ss_pred             hhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHHHhccccc
Confidence            99999999999999995432    11122222221111111100000000    01233333333333332233334444


Q ss_pred             ccccccccccchhhhhhhhhHHHHHHHHHHH-HHHHhhhhHHhhc
Q 043907          269 LAWLVPSEIFPLEIRSAGQSITVAVNFVFTF-LTAQTFLPMLCHF  312 (330)
Q Consensus       269 ~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~  312 (330)
                      ....+ .|+.|++.|.++.++...+..+.+- -+|++.|.+.|+.
T Consensus       370 n~~i~-l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l  413 (493)
T KOG1330|consen  370 NNPIF-LEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKL  413 (493)
T ss_pred             cccee-eEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHh
Confidence            43344 7999999999999998777655554 4555999988875

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.89  E-value=6.3e-21  Score=158.09  Aligned_cols=273  Identities=12%  Similarity=0.058  Sum_probs=170.7

Q ss_pred             cchhhhhhhhchh----HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc---------------------
Q 043907            2 LIASSVTRAIGRK----VSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ---------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~---------------------   56 (330)
                      +++|++.||+|||    +.+.+...+.  .......+++++.+++.|++.|++.+...+                     
T Consensus        57 ~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~~~~~~a~~~~~  134 (382)
T PRK11128         57 LLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTWQKQIGLDYGKVR  134 (382)
T ss_pred             HHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHhhccCCcchHH
Confidence            5789999999984    3333222222  223334458899999999999988776655                     


Q ss_pred             ----------------ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHH
Q 043907           57 ----------------IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELND  120 (330)
Q Consensus        57 ----------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  120 (330)
                                      +.+.+|||..|++.++..++..+...+.||.++    +++ ++                     
T Consensus       135 ~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~----~~~-~~---------------------  188 (382)
T PRK11128        135 LWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQLLRPTIMP----QGE-SR---------------------  188 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHccCCCCC----ccc-cc---------------------
Confidence                            455679999998777544444333334454321    001 00                     


Q ss_pred             HHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHH
Q 043907          121 LIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAI  200 (330)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  200 (330)
                           +++++...++++.++++..+.......+.    .........+.|.+.++.|.++.+.+ .......+..++...
T Consensus       189 -----~~~~~~~~~~~~i~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~  258 (382)
T PRK11128        189 -----QQESAGWPAWKALLKEPTVWRFLLCVSLL----QGSHAAYYGFSAIYWQAAGYSASTIG-YLWSLGVVAEVLIFA  258 (382)
T ss_pred             -----cccccccchHHHHHcChhHHHHHHHHHHH----HHHhHhHHHHHHHHHHHCCCCHhHHH-HHHHHHHHHHHHHHH
Confidence                 00001123456666554333222222222    22234455666777778899988888 777788889999999


Q ss_pred             HHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccch
Q 043907          201 ISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPL  280 (330)
Q Consensus       201 ~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~  280 (330)
                      +.+++.||+++|+.+..+.....+..+.+...             ++.+.......+.+.+++.... ....+..+. ++
T Consensus       259 ~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~-~~  323 (382)
T PRK11128        259 FSNRLFRRWSARDLLLLSAICGVVRWGLMGST-------------TALPWLIVIQILHCGTFTVCHL-AAMRYIAAR-PG  323 (382)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh-------------hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHC-CH
Confidence            99999999999999888887777765554432             3344444444544444443333 334454565 55


Q ss_pred             hhhhhhhhHHH-HHHHHHHHHHHHhhhhHHhhccchhHHHHHHHHHHh
Q 043907          281 EIRSAGQSITV-AVNFVFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIM  327 (330)
Q Consensus       281 ~~r~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  327 (330)
                      +++++..+..+ .....+..++|.+.|.+.|..|...++..+++.+++
T Consensus       324 ~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~~~~~~~~~~~~~  371 (382)
T PRK11128        324 SEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAGVFWVMALVALPA  371 (382)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            66788888876 334566689999999999998876666666655543

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.88  E-value=7.5e-21  Score=157.85  Aligned_cols=261  Identities=10%  Similarity=-0.018  Sum_probs=161.6

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ-------------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~-------------------------   56 (330)
                      +++|+++||+|||++++.+.++..++++.+.++++.   ++.|+++|++.+...|                         
T Consensus        56 ~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~  132 (393)
T PRK11195         56 PFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGS  132 (393)
T ss_pred             hhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence            688999999999999999999999999888777664   7899999999998887                         


Q ss_pred             --------------ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHHH
Q 043907           57 --------------IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLI  122 (330)
Q Consensus        57 --------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  122 (330)
                                    +.+ +.|+..+.+.+...++..+..+.+||+|+...+++.  ++ .+.             .++. 
T Consensus       133 ~~~~~~~Gp~lgG~l~~-~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~-~~~-------------~~~~-  194 (393)
T PRK11195        133 TIAAILLGTVLGGALAD-PHAEAALAVCALIYLLAALFNLFIPRLGARRPGQSW--NP-IAL-------------LRDF-  194 (393)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccCC--CH-HHH-------------HHHH-
Confidence                          222 336666665554444444445668887642111100  00 000             0000 


Q ss_pred             HhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCchhhHHHHHHHHHHHHHHHHH
Q 043907          123 RASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSAVVAGGMGTVLAII  201 (330)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~  201 (330)
                               +...+.+++++..+.......+...    .........|.+.+ .+|.++.+.+ .......++.++++++
T Consensus       195 ---------~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~lg~s~~~~G-~~~~~~~~g~i~g~~~  260 (393)
T PRK11195        195 ---------FHACRVLWRDKLGRFSLAGTTLFWG----AGATLRFLVLAWAPVALGITLNQPA-YLQAVVAIGIAVGAGA  260 (393)
T ss_pred             ---------HHHHHHHHhCchhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCChhHHH-HHHHHHHHHHHHHHHH
Confidence                     0112344444433333222222111    12233334444443 4688888888 8889999999999999


Q ss_pred             HHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchh
Q 043907          202 SMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLE  281 (330)
Q Consensus       202 ~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  281 (330)
                      .+++.||.++|+.+..+. ..++....+...             ++.+.......+.+.+.+....+. .+...|..|++
T Consensus       261 ~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~-------------~~~~~~~~~~~~~G~~~g~~~~~~-~~~~q~~~~~~  325 (393)
T PRK11195        261 AARLVTLETVLRVLPAGI-LMGLVVLLMALQ-------------HSLLPAYPLLILIGALGGFFVVPM-NALLQHRGHVL  325 (393)
T ss_pred             HHHHhcCCcccchHHHHH-HHHHHHHHHHHH-------------hHHHHHHHHHHHHHHhhhhhhhhH-HHHHHhhCccc
Confidence            999999999888776664 333332222221             223333333334444444433333 34445766655


Q ss_pred             h-hhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907          282 I-RSAGQSITVAVNFVFTFLTAQTFLPMLCHFK  313 (330)
Q Consensus       282 ~-r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g  313 (330)
                      . +|++.++.+...+++..++..+.+.+ +..|
T Consensus       326 ~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~  357 (393)
T PRK11195        326 VGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLG  357 (393)
T ss_pred             ccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcC
Confidence            4 79999999999999999999888854 6667

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.88  E-value=5.1e-21  Score=160.74  Aligned_cols=135  Identities=12%  Similarity=0.086  Sum_probs=94.2

Q ss_pred             CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHH
Q 043907          177 KLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVC  256 (330)
Q Consensus       177 g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (330)
                      +.+..+.+ ...+...+...++.++.|++.||+|||+.+..+..+..+....+.+.             ++.+.......
T Consensus       258 ~~~~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~-------------~~~~~~~~~~~  323 (420)
T PRK09528        258 EQGTRVFG-YLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA-------------TGPLEVSILKL  323 (420)
T ss_pred             CcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc-------------ccHHHHHHHHH
Confidence            45555566 77777888889999999999999999999888877777766655542             22333333333


Q ss_pred             HhhcccccccccccccccccccchhhhhhhhhH-HHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHHHHHHH
Q 043907          257 LCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSI-TVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFGGLVLI  326 (330)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~  326 (330)
                      +.+.+.+.. .+....++.|.+|++.|++..+. .++...++..+++.+.|.+.|..|+ ..|...+++.++
T Consensus       324 l~g~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i  394 (420)
T PRK09528        324 LHAFEVPFL-LVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLL  394 (420)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHH
Confidence            333232222 12334566788899999988766 5677889999999999999999885 566665655544

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.88  E-value=1e-20  Score=158.05  Aligned_cols=277  Identities=13%  Similarity=0.082  Sum_probs=167.9

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ-------------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~-------------------------   56 (330)
                      +++|+++||+|||+++..+..+++++++++++++|++.++++|+++|++.+...+                         
T Consensus        69 ~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (413)
T PRK15403         69 WLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSI  148 (413)
T ss_pred             HhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            5689999999999999999999999999999999999999999999998875433                         


Q ss_pred             --------------ccCccchHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHH
Q 043907           57 --------------IKGGWGWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDL  121 (330)
Q Consensus        57 --------------~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  121 (330)
                                    +.+..|||+.|++.++..++..+. .+.+||+++   ++++ ..+                     
T Consensus       149 ~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~---~~~~-~~~---------------------  203 (413)
T PRK15403        149 VLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK---RGAV-PFS---------------------  203 (413)
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc---ccCC-CCC---------------------
Confidence                          444579999999988877666554 445788753   1111 000                     


Q ss_pred             HHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHh-cCCCCchhhHHHHHHHHHHHHHHHH
Q 043907          122 IRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRT-LKLGESTSLLLSAVVAGGMGTVLAI  200 (330)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~  200 (330)
                            .++..+++++.++++    .++...+..............+.|.++++ .|.++.+.+ +.......+..++..
T Consensus       204 ------~~~~~~~~~~ll~~~----~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~g-l~~~~~~~~~~i~~~  272 (413)
T PRK15403        204 ------AKSVLRDFRNVFRNR----LFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFA-WTQVPVFGAVIVANA  272 (413)
T ss_pred             ------hHHHHHHHHHHHcCH----HHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHH
Confidence                  000011234444332    22223233333334445556677887765 588988888 777777778888888


Q ss_pred             HHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccch
Q 043907          201 ISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPL  280 (330)
Q Consensus       201 ~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~  280 (330)
                      +.+++.++..+++..........++...+......        ..+..+.......++..+.+...+.. ... +..-+.
T Consensus       273 l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~--------~~~~~~~~~~~~~l~~~G~~~~~p~~-~~~-al~~~~  342 (413)
T PRK15403        273 IVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLL--------WPHVWLWSVLGTSLYAFGIGLIFPTL-FRF-TLFSNN  342 (413)
T ss_pred             HHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHH--------ccccHHHHHHHHHHHHHHHHHHhHHH-HHH-HhccCC
Confidence            88877655444443322222223332222221100        01222222334444444444333322 211 111122


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccchhHHHHHHHH
Q 043907          281 EIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAGIFFFFGGLV  324 (330)
Q Consensus       281 ~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  324 (330)
                      ..+|++.++.+.....+...++...+++.++.....+...++++
T Consensus       343 ~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  386 (413)
T PRK15403        343 LPKGTVSASLNMVILMVMAVSVEIGRWLWFNGGRLPFHLLAVVA  386 (413)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence            24799999999999999999999999887764455554444443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.88  E-value=1.5e-21  Score=161.35  Aligned_cols=259  Identities=13%  Similarity=0.119  Sum_probs=157.4

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHhhcccccccc------------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAF-NIYMLIFGRLLLGVGIGFGNQ------------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~~g~~~~------------------------   56 (330)
                      ++.|+++||+|||+.+..+.++..++.+++++++ +++.+++.|+++|++.+...+                        
T Consensus        55 ~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  134 (366)
T TIGR00886        55 IILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGW  134 (366)
T ss_pred             HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHH
Confidence            5789999999999999999999999999999999 999999999999998665433                        


Q ss_pred             --------------cc----------CccchHHHH-HhhhHHHHH-HHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhc
Q 043907           57 --------------IK----------GGWGWRISL-AMAAAPASI-LTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRG  110 (330)
Q Consensus        57 --------------~~----------~~~~wr~~~-~~~~~~~~~-~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~  110 (330)
                                    +.          +..+||+.| ...++...+ ..+...+.+|+|+.   +++ +++.+.       
T Consensus       135 ~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~-------  203 (366)
T TIGR00886       135 GNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPG---KPA-TGKLSF-------  203 (366)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCcc---ccc-chhccc-------
Confidence                          11          134899988 443443333 33334556776631   111 000000       


Q ss_pred             ccchhHHHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCchhhHHHHH
Q 043907          111 ISDVKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSAV  189 (330)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~  189 (330)
                      ++...          +.+++...+.++.++++..+.    ..+..+...........+.|.+++ ..|.++.+.+ ....
T Consensus       204 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~  268 (366)
T TIGR00886       204 KGARW----------SVGTGALGDQLKVFRDRHTWI----LALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAG-AYAS  268 (366)
T ss_pred             ccccc----------cccchhHHHHHHHHhccchhh----HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH-HHHH
Confidence            00000          000000012333443332221    222222222334456677777775 4688888888 7888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccc
Q 043907          190 VAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPL  269 (330)
Q Consensus       190 ~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (330)
                      ...+..+++.++.+++.||+|||+....+......+...+....         .++.+.+.............+.+.+ .
T Consensus       269 ~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~g~~~~-~  338 (366)
T TIGR00886       269 LGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGL---------VSPLSLAVFIVLFVALFFFSGAGNG-S  338 (366)
T ss_pred             HHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcC---------CCcchHHHHHHHHHHHHHHhccccc-h
Confidence            88899999999999999999999887776665555544443321         0100233222333333333333333 3


Q ss_pred             cccccccccchhhhhhhhhHHHHHHHHH
Q 043907          270 AWLVPSEIFPLEIRSAGQSITVAVNFVF  297 (330)
Q Consensus       270 ~~~~~~e~~p~~~r~~~~g~~~~~~~~~  297 (330)
                      .+.+++|..| +++|++.|+.+..+++|
T Consensus       339 ~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       339 TFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             hhhcchhhch-hhcccHHHHHHHhccCC
Confidence            3455578777 68999999988877654

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.88  E-value=1.4e-20  Score=156.96  Aligned_cols=260  Identities=17%  Similarity=0.194  Sum_probs=162.0

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ-------------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~-------------------------   56 (330)
                      +++|+++||+|||+++..+..+..++.+.+.++++++.+++.|+++|++.+...+                         
T Consensus        61 ~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (394)
T PRK11652         61 LFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMG  140 (394)
T ss_pred             HhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999998775433                         


Q ss_pred             --------------ccCccchHHHHHhhhHHHHHHHH-HHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHH
Q 043907           57 --------------IKGGWGWRISLAMAAAPASILTI-GAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDL  121 (330)
Q Consensus        57 --------------~~~~~~wr~~~~~~~~~~~~~~~-~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  121 (330)
                                    +.+..+||+.|++.++..++..+ ..++.||+|+.   +++ .++                     
T Consensus       141 ~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~---------------------  195 (394)
T PRK11652        141 ILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRPA---DAR-RTR---------------------  195 (394)
T ss_pred             HHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCcc---ccc-hhH---------------------
Confidence                          34457899999987766554433 34557876531   000 000                     


Q ss_pred             HHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHh-cCCCCchhhHHHHHHHHHHHHHHHH
Q 043907          122 IRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRT-LKLGESTSLLLSAVVAGGMGTVLAI  200 (330)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~  200 (330)
                               .+.++++.++++..+......    +....+......+.+.++++ .|.++.+.+ .......++.+++..
T Consensus       196 ---------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~g~~  261 (394)
T PRK11652        196 ---------VLASYRTLLSNRRFNCYLLML----IGTLAGIAVFEACSGVLMGAVLGLSSMTVS-ILFILPIPAAFFGAW  261 (394)
T ss_pred             ---------HHHHHHHHHcChHHHHHHHHH----HHHHHHHHHHHHhChHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHH
Confidence                     011233333332222222211    11222333444455666655 788888777 777777888888889


Q ss_pred             HHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccch
Q 043907          201 ISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPL  280 (330)
Q Consensus       201 ~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~  280 (330)
                      +.+++.||.+++...  ......+..+.+......        .....+.........+.+.+... |....+..|..| 
T Consensus       262 ~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~-  329 (394)
T PRK11652        262 FAGRPNKRFSTLMWQ--SVICCLLAGLLMWIPGWF--------GVMNVWTLLVPAALFFFGAGMLF-PLATSGAMEPFP-  329 (394)
T ss_pred             HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHh--------ccccHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcc-
Confidence            999999998843322  222222222221111000        11222333333344444444333 344445567777 


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhc
Q 043907          281 EIRSAGQSITVAVNFVFTFLTAQTFLPMLCHF  312 (330)
Q Consensus       281 ~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  312 (330)
                      ++++++.++.+....+++.+++.+.+.+.+..
T Consensus       330 ~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~  361 (394)
T PRK11652        330 YLAGTAGALLGGLQNIGSGLAALLSAMLPQTG  361 (394)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence            57899999999999999999999988776543

>PRK10054 putative transporter; Provisional

Probab=99.87  E-value=2.7e-21  Score=160.61  Aligned_cols=271  Identities=10%  Similarity=0.039  Sum_probs=169.2

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ-------------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~-------------------------   56 (330)
                      ++.|+++||+|||+++.++.++..++.+..+++++++.+++.|.+.|.+.+...+                         
T Consensus        61 ~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  140 (395)
T PRK10054         61 LGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTM  140 (395)
T ss_pred             HHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999888876654432                         


Q ss_pred             --------------ccCccchHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHH
Q 043907           57 --------------IKGGWGWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDL  121 (330)
Q Consensus        57 --------------~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  121 (330)
                                    +.+ .+||..|.+.++..++..+. .+++||+++   ++++  ++                     
T Consensus       141 ~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~---~~~~--~~---------------------  193 (395)
T PRK10054        141 LNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSEK---AIAT--ET---------------------  193 (395)
T ss_pred             HHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhcccc---cccc--ch---------------------
Confidence                          333 68999998877766665443 344555432   0000  00                     


Q ss_pred             HHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHH---HhcCCCCchhhHHHHHHHHHHHHHH
Q 043907          122 IRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLF---RTLKLGESTSLLLSAVVAGGMGTVL  198 (330)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~  198 (330)
                            +  +..+.++.++++..+.......+...    .......+.+.+.   ++.+.++...+ .......+.....
T Consensus       194 ------~--~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~  260 (395)
T PRK10054        194 ------G--SVWSPSVLLQDKALLWFTCSGFLASF----VSGAFASCISQYVMVVADSDFAEKVVA-VVLPVNAAMVVSL  260 (395)
T ss_pred             ------h--hhhhhhhhccCceehHHHHHHHHHHH----HHHHhhhhHHHHHHHhcccchHHHHHH-HHHHhhhhheeee
Confidence                  0  00011333333322222222221111    1222223334433   23344444555 5666666677777


Q ss_pred             HHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccccccccccccccccc
Q 043907          199 AIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIF  278 (330)
Q Consensus       199 ~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  278 (330)
                      ....+++.||.++|+.+..+..+..++...+...            .++.+...+.......+.. ...|.....+.|..
T Consensus       261 ~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~g~~-~~~p~~~~~~~~~~  327 (395)
T PRK10054        261 QYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFS------------GNSLLLWGMSAAVFTVGEI-IYAPGEYMLIDHIA  327 (395)
T ss_pred             hhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHc------------chHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHhC
Confidence            7888999999999998888877776666555432            1222323333344443432 22344456667889


Q ss_pred             chhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHHHHHHH
Q 043907          279 PLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFGGLVLI  326 (330)
Q Consensus       279 p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~  326 (330)
                      |++.|+++.+..+ ..++|..++|.+.|.+.|+.|. ..|++.+.+..+
T Consensus       328 p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~  375 (395)
T PRK10054        328 PPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVA  375 (395)
T ss_pred             CcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHH
Confidence            9999999998755 6778999999999999999984 555555444433

>PRK10133 L-fucose transporter; Provisional

Probab=99.87  E-value=1.5e-20  Score=157.81  Aligned_cols=267  Identities=10%  Similarity=0.057  Sum_probs=165.0

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHhhcccccccc----------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYG---GSAFNIYMLIFGRLLLGVGIGFGNQ----------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~r~l~G~~~g~~~~----------------------   56 (330)
                      ++.|++.||+|||+++..+..+++++++++   ..+++++.++++|+++|++.|...+                      
T Consensus        79 ~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~  158 (438)
T PRK10133         79 IPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLA  158 (438)
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHH
Confidence            578999999999999999999999999885   4678999999999999999998765                      


Q ss_pred             -----------------cc-Cc-------------------------cchHHHHHhhh-HHHHHHHHH-HhhcCCCchhh
Q 043907           57 -----------------IK-GG-------------------------WGWRISLAMAA-APASILTIG-AIFLPETPNSK   91 (330)
Q Consensus        57 -----------------~~-~~-------------------------~~wr~~~~~~~-~~~~~~~~~-~~~~pesp~~~   91 (330)
                                       +. ..                         .+||++|+... +..++..+. ....||.|.  
T Consensus       159 ~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~--  236 (438)
T PRK10133        159 QTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS--  236 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc--
Confidence                             10 00                         24555554322 322222222 222444221  


Q ss_pred             hccCCcHHHHHHHHHHHhcccchhHHHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHH
Q 043907           92 IQRSDDHQKAQKMLQRIRGISDVKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPV  171 (330)
Q Consensus        92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (330)
                        +++ .+                          +++.+...+.+++++++..+...+..    +...........|.+.
T Consensus       237 --~~~-~~--------------------------~~~~~~~~~~~~ll~~~~~~~~~l~~----~~~~~~~~~~~~~~~~  283 (438)
T PRK10133        237 --DNH-SD--------------------------AKQGSFSASLSRLARIRHWRWAVLAQ----FCYVGAQTACWSYLIR  283 (438)
T ss_pred             --ccc-cc--------------------------ccccchhhhHHHHHhCchHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence              000 00                          00000112234455444333222222    2222333334456665


Q ss_pred             HH-H-hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhH
Q 043907          172 LF-R-TLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAY  249 (330)
Q Consensus       172 ~~-~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (330)
                      ++ + ..|+++.+.+ .......++.++++++.+++.||+|+|+.+..+..+..+........           + . . 
T Consensus       284 ~l~~~~~g~s~~~ag-~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~-----------~-~-~-  348 (438)
T PRK10133        284 YAVEEIPGMTAGFAA-NYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA-----------G-G-H-  348 (438)
T ss_pred             HHhhhcCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc-----------C-C-h-
Confidence            53 4 4699999998 88999999999999999999999999999887766655544433221           1 1 1 


Q ss_pred             HHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc-c-hhHHHHH
Q 043907          250 LILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK-A-GIFFFFG  321 (330)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~-~~~~~~~  321 (330)
                      .......+.+.+.+..++ .......|..|+ +.+++.++.. ....++.++|.+.+.+.|..| . ..|++..
T Consensus       349 ~~~~~~~l~glg~~~i~P-~~~s~a~~~~~~-~~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~  419 (438)
T PRK10133        349 VGLIALTLCSAFMSIQYP-TIFSLGIKNLGQ-DTKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPA  419 (438)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHcccch-hhccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHHHH
Confidence            122333444445554444 434444577765 4677888776 455788999999999999876 3 4555433

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.87  E-value=2.2e-20  Score=175.74  Aligned_cols=266  Identities=12%  Similarity=-0.043  Sum_probs=165.8

Q ss_pred             CcchhhhhhhhchhHHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHhhcccccccc---------------------
Q 043907            1 SLIASSVTRAIGRKVSILIGGVAFLADSAYGG---SAFNIYMLIFGRLLLGVGIGFGNQ---------------------   56 (330)
Q Consensus         1 ~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~r~l~G~~~g~~~~---------------------   56 (330)
                      ++++|+++||+|||++++++.++..+..++..   .+++++.+++.|+++|++.+...+                     
T Consensus        64 ~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~  143 (1146)
T PRK08633         64 SSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGL  143 (1146)
T ss_pred             hhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhH
Confidence            36789999999999999998877666655544   347899999999999999998766                     


Q ss_pred             ------------------ccCc---------cchHHHHHhhhH-HHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHH
Q 043907           57 ------------------IKGG---------WGWRISLAMAAA-PASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRI  108 (330)
Q Consensus        57 ------------------~~~~---------~~wr~~~~~~~~-~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~  108 (330)
                                        +...         .+|++.+.+..+ ..++.++..+.+||+|+....+.+  ++.       
T Consensus       144 ~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-------  214 (1146)
T PRK08633        144 LEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFD--KKK-------  214 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCccccc--ccc-------
Confidence                              2222         234444433333 333334445567887653111100  000       


Q ss_pred             hcccchhHHHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHH-HhcCCCCc-hhhHH
Q 043907          109 RGISDVKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLF-RTLKLGES-TSLLL  186 (330)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~-~~~~~  186 (330)
                                      ....++....++.+++++..+..++.    .+...........+.|.++ +..|.+.. ..+ +
T Consensus       215 ----------------~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g-~  273 (1146)
T PRK08633        215 ----------------YLFPKLLWRNLKLLRSDRVLWLAIIG----LSYFWFISQLAQANFPAYAKEVLGLDNTFQVQ-Y  273 (1146)
T ss_pred             ----------------cccHHHHHHHHHHHhcCcHHHHHHHH----HHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHH-H
Confidence                            00000001223444443322222222    2222222334455666666 45788888 777 8


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccccc
Q 043907          187 SAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSW  266 (330)
Q Consensus       187 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (330)
                      +.+...++.+++.++.+++.||+++++.+.++.++.+++.+.+...             .+.+..++...+.+.+.+...
T Consensus       274 ~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~~~  340 (1146)
T PRK08633        274 LLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA-------------PSLASVLVLFFLFGFSAGLFI  340 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh-------------hhHHHHHHHHHHHHHHHHHhh
Confidence            8888999999999999999999999988887777776666555543             233333344444444444333


Q ss_pred             ccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHh
Q 043907          267 GPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLC  310 (330)
Q Consensus       267 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~  310 (330)
                      . ....++.+..|++.||+++|+.+.+..++..+++.+.+.+..
T Consensus       341 ~-~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~  383 (1146)
T PRK08633        341 V-PLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG  383 (1146)
T ss_pred             H-HHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3 335666789999999999999999999888777776665543

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.86  E-value=4e-20  Score=153.90  Aligned_cols=255  Identities=12%  Similarity=0.081  Sum_probs=158.6

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHhhcccccccc----------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGS---AFNIYMLIFGRLLLGVGIGFGNQ----------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~r~l~G~~~g~~~~----------------------   56 (330)
                      ++.|++.||+|||+++..+..+.+++.++...   .++++.+++.|++.|+|.|...+                      
T Consensus        56 ~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (410)
T TIGR00885        56 IPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLA  135 (410)
T ss_pred             HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHH
Confidence            57899999999999999999999999988654   36899999999999999998764                      


Q ss_pred             -----------------c--c------------------------CccchHHHHHhhhHHHHHHHHHHhh--cCCCchhh
Q 043907           57 -----------------I--K------------------------GGWGWRISLAMAAAPASILTIGAIF--LPETPNSK   91 (330)
Q Consensus        57 -----------------~--~------------------------~~~~wr~~~~~~~~~~~~~~~~~~~--~pesp~~~   91 (330)
                                       +  .                        +..+||++|.+.+++.++..+...+  .||.++  
T Consensus       136 ~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~--  213 (410)
T TIGR00885       136 QSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH--  213 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc--
Confidence                             1  0                        1135888887777655554433322  333210  


Q ss_pred             hccCCcHHHHHHHHHHHhcccchhHHHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHH
Q 043907           92 IQRSDDHQKAQKMLQRIRGISDVKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPV  171 (330)
Q Consensus        92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (330)
                         ++  +                           ++++.+.+.++.++++..+......++    ..........+.+.
T Consensus       214 ---~~--~---------------------------~~~~~~~~~~~~~~~~~~~~~~l~~f~----yvg~e~~~~s~l~~  257 (410)
T TIGR00885       214 ---SD--A---------------------------KQISFSASLSRLARIRHYREGVIAQFF----YVGVQIMCWTFIIQ  257 (410)
T ss_pred             ---cc--c---------------------------ccccchhhHHHHHhChhHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence               00  0                           000001123344443332222222222    22233344567777


Q ss_pred             HHHhcC--CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhH
Q 043907          172 LFRTLK--LGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAY  249 (330)
Q Consensus       172 ~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (330)
                      +.++.+  .+..... ...........+|+++++++.||+++|+.+........+..++....           + .  .
T Consensus       258 y~~~~~~~~~~~~a~-~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~-----------~-~--~  322 (410)
T TIGR00885       258 YAVRLIPGMTAGFAA-NYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA-----------G-G--H  322 (410)
T ss_pred             HHhhccCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc-----------C-C--h
Confidence            776543  3333333 34555567788999999999999999998887777776666555542           1 1  1


Q ss_pred             HHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhc
Q 043907          250 LILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHF  312 (330)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  312 (330)
                      ....+....+.+.+..+ |.......+..+++.+..+.++...  .+|+.+.|++.|.+.|..
T Consensus       323 ~~~~~l~~~glf~s~~f-p~i~sl~~~~~g~~~~~~s~~l~~~--~~Gga~~p~l~G~~~d~~  382 (410)
T TIGR00885       323 VGLYCLTLCSAFMSLMF-PTIYGIALKGLGQDTKYGAAGLVMA--IIGGGIVPPLQGFIIDMK  382 (410)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhHHHHHHH--HhccchHHHHHHHHHHHh
Confidence            22333444444545455 5556666788886655444444443  399999999999999954

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.85  E-value=7.1e-20  Score=171.83  Aligned_cols=277  Identities=13%  Similarity=0.022  Sum_probs=170.4

Q ss_pred             CcchhhhhhhhchhHHHHH---HHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc---------------------
Q 043907            1 SLIASSVTRAIGRKVSILI---GGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ---------------------   56 (330)
Q Consensus         1 ~~~~g~l~d~~Grk~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~---------------------   56 (330)
                      ++++|.++||+|||+++..   +.+......+.....++++++++.|+++|++.+...+                     
T Consensus        69 ~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~  148 (1140)
T PRK06814         69 SALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANAL  148 (1140)
T ss_pred             hhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHH
Confidence            3678999999999998643   2233333333333458999999999999999998877                     


Q ss_pred             ------------------ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHH
Q 043907           57 ------------------IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAEL  118 (330)
Q Consensus        57 ------------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  118 (330)
                                        +....+|++.|...++..++.++..+++|+++.-  +++. ..+.                 
T Consensus       149 ~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~-----------------  208 (1140)
T PRK06814        149 VEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGNA--APDL-KIDR-----------------  208 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCCC--CCCC-eecc-----------------
Confidence                              4455789999855555555555556667776431  0000 0000                 


Q ss_pred             HHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHh-cCCCCchhhHHHHHHHHHHHHH
Q 043907          119 NDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRT-LKLGESTSLLLSAVVAGGMGTV  197 (330)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~  197 (330)
                             +..++....++.+.+++..+.    ..+..+...........+.|.+.++ +|.++...+ .+.+...++.++
T Consensus       209 -------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g-~~~~~~~~g~~i  276 (1140)
T PRK06814        209 -------NIIRSTITLLKYAKADKRIWL----AILGISWFWLVGAVVLSQLPLLAKETLGGDENVAT-LFLAVFSVGVAV  276 (1140)
T ss_pred             -------chHHHHHHHHHHHhcCchHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHH-HHHHHHHHHHHH
Confidence                   000000112444444333222    2222222223334555678888754 688888888 888999999999


Q ss_pred             HHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCC---------CCcchhHHHHHHHHHhhccccccccc
Q 043907          198 LAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGG---------CSEGYAYLILVLVCLCSSGYCYSWGP  268 (330)
Q Consensus       198 ~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (330)
                      +.++.+++.|+.++++.+..+.++.++..+.+.+...  ......         ....+.+...+..++++.+.+....+
T Consensus       277 g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  354 (1140)
T PRK06814        277 GSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASS--SVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVP  354 (1140)
T ss_pred             HHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhccc--ccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHH
Confidence            9999999998887777666555555544443332100  000000         00122333344444444444433333


Q ss_pred             ccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhc
Q 043907          269 LAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHF  312 (330)
Q Consensus       269 ~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  312 (330)
                       ..+++.+..|++.||+++|+.++...++..+++.+.+.+.+..
T Consensus       355 -~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~  397 (1140)
T PRK06814        355 -LFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALG  397 (1140)
T ss_pred             -HHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             4566689999999999999999999999999999999887543

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.84  E-value=4.8e-19  Score=147.90  Aligned_cols=278  Identities=12%  Similarity=0.094  Sum_probs=161.5

Q ss_pred             cchhhhhhhh-----chhH-HHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHhhcccccccc----------------
Q 043907            2 LIASSVTRAI-----GRKV-SILIGGVAFLADSAYGGSA---FNIYMLIFGRLLLGVGIGFGNQ----------------   56 (330)
Q Consensus         2 ~~~g~l~d~~-----Grk~-~l~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~g~~~~----------------   56 (330)
                      +++|+++||+     |||| .+..+.++.+++....++.   ++++.+.+..++.++..+...+                
T Consensus        50 ~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~  129 (402)
T PRK11902         50 FLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERG  129 (402)
T ss_pred             HHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhh
Confidence            5789999999     8875 6888888888888877776   3567777777777766655443                


Q ss_pred             -----------------------ccC-ccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhccc
Q 043907           57 -----------------------IKG-GWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGIS  112 (330)
Q Consensus        57 -----------------------~~~-~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~  112 (330)
                                             +.+ ..|||..|++.++..++..+..++.||+++.   +++ .++.+          
T Consensus       130 ~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~---~~~-~~~~~----------  195 (402)
T PRK11902        130 AGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTTLWAPEPEVP---ARP-PRSLG----------  195 (402)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCccc---ccc-cchhH----------
Confidence                                   333 2599999999887766655555667776531   111 00000          


Q ss_pred             chhHHHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHH-
Q 043907          113 DVKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVA-  191 (330)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-  191 (330)
                                      ++.+++++++++++..+.......+......   .......+.+.++.|+++++.+ ...... 
T Consensus       196 ----------------~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~---~~~~~~~~~l~~~~G~~~~~~g-~~~~~~~  255 (402)
T PRK11902        196 ----------------EAVVGPLRDFFSRRGAWALLLLIVLYKLGDA---FAGSLSTTFLIRGAGFSAGEVG-IVNKTLG  255 (402)
T ss_pred             ----------------HHHHHHHHHHHhCcCHHHHHHHHHHHHhHHH---HHHHHHHHHHHHhcCCCHHHHH-HHHhHHH
Confidence                            0011234555555444433333222222111   1112223445566899988887 655443 


Q ss_pred             HHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHH----hhcccccccc
Q 043907          192 GGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCL----CSSGYCYSWG  267 (330)
Q Consensus       192 ~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  267 (330)
                      .++.+++.++.+++.||+|||+.+..+.....+..+.+.....         .+++.+........    .+...+ ...
T Consensus       256 ~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~g~~~~-~~~  325 (402)
T PRK11902        256 LAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAV---------TPKHLWTMALAIGIENLCGGMGTA-AFV  325 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh---------cCCcHHHHHHHHHHHHHHHHHHHH-HHH
Confidence            4568899999999999999999877666665554433322210         11122322222221    111111 222


Q ss_pred             cccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHHHHHHHh
Q 043907          268 PLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFGGLVLIM  327 (330)
Q Consensus       268 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~  327 (330)
                      +....++.+.+|.+.+    +..+....++...++.+.|.+.|..|+ ..|.+.+.+++++
T Consensus       326 ~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~  382 (402)
T PRK11902        326 ALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPG  382 (402)
T ss_pred             HHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence            3444566777776654    444445567777677789999999996 4455555555443

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.84  E-value=7.9e-20  Score=153.75  Aligned_cols=304  Identities=17%  Similarity=0.229  Sum_probs=200.4

Q ss_pred             CcchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHhhcccccccc-----------------------
Q 043907            1 SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFG-RLLLGVGIGFGNQ-----------------------   56 (330)
Q Consensus         1 ~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-r~l~G~~~g~~~~-----------------------   56 (330)
                      +|+.+.+.||+|.|++.+.|.++..++.++.+++++++++++. -++.|+|.|..+.                       
T Consensus        98 gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kkR~lA~Gia~~  177 (509)
T KOG2504|consen   98 GPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKKRALATGIAVS  177 (509)
T ss_pred             ccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHHHHHHHhhhhc
Confidence            4788999999999999999999999999999999999888875 4888999998876                       


Q ss_pred             ---------------ccCccchHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHH----------H-HHh
Q 043907           57 ---------------IKGGWGWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKML----------Q-RIR  109 (330)
Q Consensus        57 ---------------~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~----------~-~~~  109 (330)
                                     +.+.+|||+.+++.+.+.+-.... ...-|.+++...+  + .++-++..          + +..
T Consensus       178 GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~  254 (509)
T KOG2504|consen  178 GTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPN--E-EKDLRNSAASVESTPKPVELRIS  254 (509)
T ss_pred             cCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch--h-hhhhccccccccccccccccccc
Confidence                           556689999888877665554444 3334433321111  0 00000000          0 000


Q ss_pred             ccc--chh---HHHHHHHHhccccc--cCccch----HHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCC
Q 043907          110 GIS--DVK---AELNDLIRASSTSK--SITQPF----KNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKL  178 (330)
Q Consensus       110 ~~~--~~~---~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  178 (330)
                      ..+  ..+   .+.++.++..++..  ..+...    .+++    +.+.++...+.......++.....++|.+.++.|+
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll----~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~  330 (509)
T KOG2504|consen  255 ERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLL----KDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGL  330 (509)
T ss_pred             cCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHH----cCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            000  000   00111111111111  111111    2333    33666777777777778888888999999999999


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCc--chhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHH
Q 043907          179 GESTSLLLSAVVAGGMGTVLAIISMILADKFGR--KVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVC  256 (330)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (330)
                      ++.+.. ...+..++..+++.++.|++.|+...  +....++.+..+++.+.....             +..+.......
T Consensus       331 ~~~~aa-~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~-------------~~~~~l~~~~~  396 (509)
T KOG2504|consen  331 SSNDAA-FLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFA-------------TTYVGLIVFSI  396 (509)
T ss_pred             ChhhhH-HHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHh-------------ccHHHHHHHHH
Confidence            999999 99999999999999999999999874  344444555555555333332             33334444444


Q ss_pred             HhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc-c-hhHHHHHHHHHH
Q 043907          257 LCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK-A-GIFFFFGGLVLI  326 (330)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~-~~~~~~~~~~~~  326 (330)
                      +++...+ .+.......+.|+.+.+.-..+.|+...+..++..++|++.+.+.|..+ + ..|+..+.+.++
T Consensus       397 ~fG~~~g-~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~  467 (509)
T KOG2504|consen  397 LFGFCVG-SFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLL  467 (509)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHH
Confidence            4444433 3344544566899999999999999999999999999999999999888 4 444444444433

>TIGR00901 2A0125 AmpG-related permease

Probab=99.84  E-value=1.5e-19  Score=148.69  Aligned_cols=259  Identities=12%  Similarity=0.078  Sum_probs=154.2

Q ss_pred             cchhhhhhhh-----chhHHH-HHHHHHHHHHHHHHhhh---hhHHHHHHHHHHhhcccccccc----------------
Q 043907            2 LIASSVTRAI-----GRKVSI-LIGGVAFLADSAYGGSA---FNIYMLIFGRLLLGVGIGFGNQ----------------   56 (330)
Q Consensus         2 ~~~g~l~d~~-----Grk~~l-~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~g~~~~----------------   56 (330)
                      +++|+++||+     ||||.+ +.+.+..++.....++.   .+.+.+....++.+++.+...+                
T Consensus        39 ~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~  118 (356)
T TIGR00901        39 FLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELG  118 (356)
T ss_pred             HHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhc
Confidence            5789999998     899974 66777777777777776   4555666666677765554433                


Q ss_pred             -----------------------ccCccc--------hHHHHHhhhHHHHHHHHHHhh-cCCCchhhhccCCcHHHHHHH
Q 043907           57 -----------------------IKGGWG--------WRISLAMAAAPASILTIGAIF-LPETPNSKIQRSDDHQKAQKM  104 (330)
Q Consensus        57 -----------------------~~~~~~--------wr~~~~~~~~~~~~~~~~~~~-~pesp~~~~~~~~~~~~a~~~  104 (330)
                                             +.+..+        ||..|++.++..++..+..++ .||+++.   +++ .++    
T Consensus       119 ~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~---~~~-~~~----  190 (356)
T TIGR00901       119 YGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQED---ASV-PKP----  190 (356)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCCcc---ccc-chh----
Confidence                                   334455        999999988876665555443 5664320   000 000    


Q ss_pred             HHHHhcccchhHHHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhh
Q 043907          105 LQRIRGISDVKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSL  184 (330)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  184 (330)
                                     +       +++.+.+++++++++..++......... ...........+.|.+.++.|+++++.+
T Consensus       191 ---------------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~g~~~~~~g  247 (356)
T TIGR00901       191 ---------------L-------TQAVLKPIREFFQRKNMIQALLLLLLIV-LYKLGDSAATVLTTLFLLDMGFSKEEIA  247 (356)
T ss_pred             ---------------H-------HHHHHHHHHHHHHhcCchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence                           0       0000123444444433222332222222 2234445666778888877899888877


Q ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccc
Q 043907          185 LLSAVVAG-GMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYC  263 (330)
Q Consensus       185 ~~~~~~~~-~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (330)
                       ......+ +..+++.++++++.||+|||+.+..+.++..+....+.+...... ..+ ...+..+....+..+...+.+
T Consensus       248 -~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~l~~~~~~  324 (356)
T TIGR00901       248 -LVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGH-HDG-ITFPHLLMLFLTITLEAVTGG  324 (356)
T ss_pred             -HHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCc-ccc-cccchHHHHHHHHHHHHHHhH
Confidence             5555444 677899999999999999999988777776665554443210000 000 000122333333333333434


Q ss_pred             cccccccccccccccchhhhhhhhhHHHHHHH
Q 043907          264 YSWGPLAWLVPSEIFPLEIRSAGQSITVAVNF  295 (330)
Q Consensus       264 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~  295 (330)
                      ... +....+..|.+|+++||+.+|+.+...+
T Consensus       325 ~~~-~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       325 LGT-VAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHH-HHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            333 3446677899999999999999877653

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.83  E-value=4.3e-19  Score=147.86  Aligned_cols=205  Identities=19%  Similarity=0.212  Sum_probs=145.5

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ-------------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~-------------------------   56 (330)
                      +++|.+.||++..+.+..+.+++++-.++.....|++.+++.|++.|+.++..+|                         
T Consensus        99 ~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~  178 (495)
T KOG2533|consen   99 FPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYAS  178 (495)
T ss_pred             hhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHh
Confidence            4689999999999999999999999998888899999999999999999999999                         


Q ss_pred             --------------c------cCccchHHHHHhhhHHHHHHHHH-HhhcCCCch--hhhccCCcHHHHHHHHHHHhcccc
Q 043907           57 --------------I------KGGWGWRISLAMAAAPASILTIG-AIFLPETPN--SKIQRSDDHQKAQKMLQRIRGISD  113 (330)
Q Consensus        57 --------------~------~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~--~~~~~~~~~~~a~~~~~~~~~~~~  113 (330)
                                    +      ....||||.|++.+++.++..+. .+++|+.|.  +..+    ++|.+-..++.+    
T Consensus       179 ~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~----~~ek~~~~~~~~----  250 (495)
T KOG2533|consen  179 ASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLT----DEEKELVVERLR----  250 (495)
T ss_pred             cchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccc----hHHHHHHHHHHH----
Confidence                          1      45679999999999887776655 566999986  2211    111110011110    


Q ss_pred             hhHHHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHh-cCCCCchhhHHHHHHHH
Q 043907          114 VKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRT-LKLGESTSLLLSAVVAG  192 (330)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~  192 (330)
                            +.+....+++.+...+++.++.    +.++...+..++.....+.+.+|+|.++++ .|++..++. .+.++..
T Consensus       251 ------~~~~~~~~~~~~~~~~~~a~~d----p~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~-~ls~~~~  319 (495)
T KOG2533|consen  251 ------ESPSGGIENKFKWKGFKEALKD----PGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQAN-LLSTPYD  319 (495)
T ss_pred             ------hccCCCcccccCHHHHHHHHhc----hhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhc-cccchHH
Confidence                  0001111111223334444444    334445555555666678899999999987 568899998 8999999


Q ss_pred             HHHHHHHHHHHHHHHH----hCcchhhhHhhHHHHHH
Q 043907          193 GMGTVLAIISMILADK----FGRKVLFLVGGMQMLVS  225 (330)
Q Consensus       193 ~~~~~~~~~~g~l~d~----~grr~~~~~~~~~~~~~  225 (330)
                      ++++++.+++|.++||    ..+|........+....
T Consensus       320 ~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~  356 (495)
T KOG2533|consen  320 VGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAII  356 (495)
T ss_pred             hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999    55565555544444433

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.83  E-value=8.8e-19  Score=148.21  Aligned_cols=276  Identities=15%  Similarity=0.119  Sum_probs=179.6

Q ss_pred             CcchhhhhhhhchhHHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHhhcccccccc-------------------
Q 043907            1 SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSA-----FNIYMLIFGRLLLGVGIGFGNQ-------------------   56 (330)
Q Consensus         1 ~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~r~l~G~~~g~~~~-------------------   56 (330)
                      ++++|.++||++|||+++.+.++..+..+..++.     .+.+.+++.-++.|++.+...|                   
T Consensus        62 sl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~  141 (524)
T PF05977_consen   62 SLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAAN  141 (524)
T ss_pred             HHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHH
Confidence            3679999999999999999998887665554432     4678899999999999988877                   


Q ss_pred             --------------------ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhH
Q 043907           57 --------------------IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKA  116 (330)
Q Consensus        57 --------------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~  116 (330)
                                          +....|-.+.|.+.++..++.+......++.++   +++. .+|                
T Consensus       142 al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~---~~~~-~~e----------------  201 (524)
T PF05977_consen  142 ALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPP---PSSL-PRE----------------  201 (524)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc---cccc-chh----------------
Confidence                                223345566777766554444333333322211   0000 000                


Q ss_pred             HHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCchhhHHHHHHHHHHH
Q 043907          117 ELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSAVVAGGMG  195 (330)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~  195 (330)
                               +..++.+..++-..+++..+..+....+..    .........+|.+.+ .+|.++...+ ++.+..+++.
T Consensus       202 ---------~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~----l~~~a~~aLlPl~a~~~l~~~a~~yG-ll~a~~gvGa  267 (524)
T PF05977_consen  202 ---------RFFSALREGLRYVRSSPPLRSVLLRSFLFN----LFASAVWALLPLFARDVLGGGASGYG-LLLAAFGVGA  267 (524)
T ss_pred             ---------hhhhhHHHHHHHHhcchHHHHHHHHHHHHH----HhhhHHHHhhhHHHHHHhCCcHHHHH-HHHHHHHHHH
Confidence                     000011122333332322222222111111    112233445677774 5788888888 8999999999


Q ss_pred             HHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccc
Q 043907          196 TVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPS  275 (330)
Q Consensus       196 ~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (330)
                      ++|.++.+++.+|+++++.+..+.+..+++.+.+++.             .+.+......++.+.+...... ...+...
T Consensus       268 i~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~-------------~~~~~~~~~l~l~G~~~~~~~~-~~~t~~Q  333 (524)
T PF05977_consen  268 ILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS-------------PSFWLALIALFLAGAAWIIANS-SLNTLVQ  333 (524)
T ss_pred             HHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc-------------hHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            9999999999999999998888888877777766654             4445555555555444443333 3345557


Q ss_pred             cccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc-chhHHHHHHHH
Q 043907          276 EIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK-AGIFFFFGGLV  324 (330)
Q Consensus       276 e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~  324 (330)
                      +..|++.||+++++.++....+..++..+.|.+.+..| ..++.+.++..
T Consensus       334 ~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~l  383 (524)
T PF05977_consen  334 LSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAAL  383 (524)
T ss_pred             HhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999998 45555444433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.81  E-value=2.3e-18  Score=145.74  Aligned_cols=264  Identities=19%  Similarity=0.180  Sum_probs=157.6

Q ss_pred             Ccchhhhhhh----hchhH-HHHHHHHHHHHHHHHHhhhhh------HHHHHHHHHHhhcccccccc-------------
Q 043907            1 SLIASSVTRA----IGRKV-SILIGGVAFLADSAYGGSAFN------IYMLIFGRLLLGVGIGFGNQ-------------   56 (330)
Q Consensus         1 ~~~~g~l~d~----~Grk~-~l~~~~~~~~~~~~~~~~~~~------~~~~~~~r~l~G~~~g~~~~-------------   56 (330)
                      .|+.|+++||    +|||| .++.+....+++.+++...++      ...+.+.+++.+++.+...+             
T Consensus        52 ~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~  131 (437)
T TIGR00792        52 DPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDP  131 (437)
T ss_pred             cchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCH
Confidence            3688999997    68744 567788888888887766653      45666777777766554322             


Q ss_pred             -------------------------------cc---CccchHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHH
Q 043907           57 -------------------------------IK---GGWGWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKA  101 (330)
Q Consensus        57 -------------------------------~~---~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a  101 (330)
                                                     +.   +..+||+.+.+.+++.++..+. .+..||.++.    .+ .++ 
T Consensus       132 ~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~----~~-~~~-  205 (437)
T TIGR00792       132 RERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSE----IP-KNI-  205 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCC----CC-ccc-
Confidence                                           11   2457888888777766555444 3446665310    00 000 


Q ss_pred             HHHHHHHhcccchhHHHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHh-cCCCC
Q 043907          102 QKMLQRIRGISDVKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRT-LKLGE  180 (330)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~  180 (330)
                                              +++.+.++.++++++++.    +....+..+....+......+.+.+.+. .+ ++
T Consensus       206 ------------------------~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  256 (437)
T TIGR00792       206 ------------------------EKKLSLKQIFKALFKNDQ----LLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DP  256 (437)
T ss_pred             ------------------------ccCCCHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHcchhheeEeeecC-Ch
Confidence                                    000001122334443322    2222222222223333333344444432 23 34


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhc
Q 043907          181 STSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSS  260 (330)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (330)
                      ...+ .......+..+++.++.+++.||+|+|+.+..+..+..++.+.+.+.           + .+.+...+...+.+.
T Consensus       257 ~~~~-~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~~~~~~~~~~g~  323 (437)
T TIGR00792       257 ELFS-YMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFA-----------G-SNLPLILVLIILAGF  323 (437)
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc-----------c-hhHHHHHHHHHHHHH
Confidence            4444 56667789999999999999999999999988877777665554432           1 222333333333333


Q ss_pred             ccccccccccccccccccc-------hhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907          261 GYCYSWGPLAWLVPSEIFP-------LEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK  313 (330)
Q Consensus       261 ~~~~~~~~~~~~~~~e~~p-------~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g  313 (330)
                      +.+.. .+..+.+.+|..+       ++.+|+..|+.+....++..+++.+.+.+.+..|
T Consensus       324 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G  382 (437)
T TIGR00792       324 GQNFV-TGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIG  382 (437)
T ss_pred             HHHHH-HHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            43333 2344555567654       4567999999999999999999999999988765

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.80  E-value=7.3e-18  Score=140.37  Aligned_cols=225  Identities=8%  Similarity=-0.091  Sum_probs=129.8

Q ss_pred             ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHHHHhccccccCccchH
Q 043907           57 IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLIRASSTSKSITQPFK  136 (330)
Q Consensus        57 ~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (330)
                      +.+..|||..|++.++..++..+..++++|+++   ++++ .+                             ++...+++
T Consensus       156 l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~---~~~~-~~-----------------------------~~~~~~~~  202 (390)
T TIGR02718       156 LFGKFGQRPAFLLVACVPLASLVCVLWLKDRAV---ASPE-AP-----------------------------LARRASLF  202 (390)
T ss_pred             HHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCc---Cccc-cc-----------------------------hhhHHHHH
Confidence            455679999999988777665555555544321   0000 00                             00012345


Q ss_pred             HhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHH-HHHHHHHHHHHHHHHHhCcchhh
Q 043907          137 NIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAG-GMGTVLAIISMILADKFGRKVLF  215 (330)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~grr~~~  215 (330)
                      +.+|++..+.......+..    ........+.+.+.++.|+++++.+ ......+ ...+++.++.|++.||+|+|+.+
T Consensus       203 ~~l~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~l~~~G~s~~~ig-~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l  277 (390)
T TIGR02718       203 RFFRRPLAWSLLALALLSA----MTAVSGFGLSKLYLVDAGWPLEWIG-RLGMAGGAVTVLLGCGGGAWLVRRAGLWRTF  277 (390)
T ss_pred             HHHcCcCHHHHHHHHHHHH----HHHHHHHHHhhHHHHhcCCCHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            5555544333333222222    2233444566777778899999888 6666555 46667789999999999999998


Q ss_pred             hHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccch-hhhhhhhhHHHHHH
Q 043907          216 LVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPL-EIRSAGQSITVAVN  294 (330)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~r~~~~g~~~~~~  294 (330)
                      ..+.....+...........   .    ...................+...... .....+..++ +.+++.+++.+...
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~  349 (390)
T TIGR02718       278 ILGVGLAGSLALLWFAQAAF---W----LAPGIAVAWSCSAFGSLITGITSVAI-YTAFMRFAGDGDQAGTDVTAVQSTR  349 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHc---c----cCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCcccchHHHHHHHHHHH
Confidence            87666553332222111100   0    00111111222222222223232222 2333455554 88999999999999


Q ss_pred             HHHHHHHHHhhhhHHhhccc-hhHHHHHHHHHHh
Q 043907          295 FVFTFLTAQTFLPMLCHFKA-GIFFFFGGLVLIM  327 (330)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~  327 (330)
                      .++..++|.+.|.+.|..|+ ..|...+++.+++
T Consensus       350 ~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a  383 (390)
T TIGR02718       350 DLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLA  383 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence            99999999999999999885 5666555554443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=7e-19  Score=137.45  Aligned_cols=276  Identities=15%  Similarity=0.029  Sum_probs=181.8

Q ss_pred             CcchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc------------------------
Q 043907            1 SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------   56 (330)
Q Consensus         1 ~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------   56 (330)
                      +++.|.+.||+|+|..+++|+..+..++++.++.+++++++++|.+||+|.+....                        
T Consensus       123 np~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGial  202 (464)
T KOG3764|consen  123 NPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIAL  202 (464)
T ss_pred             cccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999998776                        


Q ss_pred             ----------------ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHH
Q 043907           57 ----------------IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELND  120 (330)
Q Consensus        57 ----------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  120 (330)
                                      +.+..|.+.+|.+.++.+++-..+.+++-|.-+     .+                        
T Consensus       203 gfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~-----~~------------------------  253 (464)
T KOG3764|consen  203 GFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTE-----MD------------------------  253 (464)
T ss_pred             HHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccc-----cC------------------------
Confidence                            445568899999999888887777666433211     00                        


Q ss_pred             HHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHHHH
Q 043907          121 LIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTVLA  199 (330)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~  199 (330)
                           +++.++..+++++++++...    ..................-++.++ +++..+.-+.+ .......+...+++
T Consensus       254 -----~~~~~~~~~~~~Ll~dP~I~----~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G-~~fLp~~~~y~ig~  323 (464)
T KOG3764|consen  254 -----PDSTEQGTPMWSLLMDPYIL----LIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVG-LAFLPASLSYAIGT  323 (464)
T ss_pred             -----ccccccCccHHHHHhCchHh----hhhcchhhccchHHHhCcccHHHHHHhccCCCccee-eeecccccchhccC
Confidence                 11223345677777654322    122211111222233333334433 55664444677 88889999999999


Q ss_pred             HHHHHHHHHhC--cchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccc
Q 043907          200 IISMILADKFG--RKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEI  277 (330)
Q Consensus       200 ~~~g~l~d~~g--rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  277 (330)
                      .+.|.+.||++  |......+....+++.....++..          ....+......++.+........|....+ .|.
T Consensus       324 ~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~----------~~~L~vp~~~l~~~i~~~dasl~P~l~~l-vd~  392 (464)
T KOG3764|consen  324 NLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATS----------IAQLWVPNFGLGFGIGLADASLIPTLGYL-VDP  392 (464)
T ss_pred             chHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhh----------HHHHhhhhHHHHHHHHHHHHHHhhhhHHh-cch
Confidence            99999999999  544444444444544444444310          01222233333333333333333433223 344


Q ss_pred             cchh---hhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc-chhHHHHHHHHHH
Q 043907          278 FPLE---IRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK-AGIFFFFGGLVLI  326 (330)
Q Consensus       278 ~p~~---~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~  326 (330)
                      -..+   ..|...++......++.+++|.+.|.+.+..| .|...+.+..+++
T Consensus       393 rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~i  445 (464)
T KOG3764|consen  393 RHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLI  445 (464)
T ss_pred             hhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHH
Confidence            4444   67889999999999999999999999999999 4555555555443

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.78  E-value=3.4e-18  Score=132.92  Aligned_cols=279  Identities=12%  Similarity=0.036  Sum_probs=148.4

Q ss_pred             CcchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc------------------------
Q 043907            1 SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------   56 (330)
Q Consensus         1 ~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------   56 (330)
                      ++.+|.++||||||++++.|++..++..++.+.+.|+..+.++|++.|+..|...+                        
T Consensus        85 S~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~rAiisdV~sek~r~l~ms~v~~a  164 (451)
T KOG2615|consen   85 SPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIRAIISDVVSEKYRPLGMSLVGTA  164 (451)
T ss_pred             hhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHhhcChhhccceeeeeehh
Confidence            46899999999999999999999999999999999997777779999999998766                        


Q ss_pred             ------ccCcc----------chHHHHHhhh----HHHHH-HHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchh
Q 043907           57 ------IKGGW----------GWRISLAMAA----APASI-LTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVK  115 (330)
Q Consensus        57 ------~~~~~----------~wr~~~~~~~----~~~~~-~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~  115 (330)
                            +.+..          .=+++|....    +.... .....+++||+-.   .+++ .++..... +   ..+.+
T Consensus       165 ~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~---~rk~-~~~~~~~~-~---~~~~~  236 (451)
T KOG2615|consen  165 FGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLP---LRKR-NDEHSTLQ-E---AADDR  236 (451)
T ss_pred             hhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcccc---chhh-cccccchh-h---hhhhh
Confidence                  11100          0012232222    22222 3344677899832   1222 11100000 0   00000


Q ss_pred             HHHHHHHHhccccccCccchHHhcc-cccch--hHHHHHHHHHHHHhhhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHH
Q 043907          116 AELNDLIRASSTSKSITQPFKNIIQ-RKYRP--QPVMAILIPFFQQVTGINIVGLYSPVLF-RTLKLGESTSLLLSAVVA  191 (330)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~  191 (330)
                         ++..+..      +..-....+ .+...  ...-.+.+..+.....+....++.+.+. +.+|+++.+.+ .+.+..
T Consensus       237 ---~~~~~~~------~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G-~vl~~t  306 (451)
T KOG2615|consen  237 ---LALLKFA------RIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQG-KVLSTT  306 (451)
T ss_pred             ---hhhcchh------hhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhhe-eeeehh
Confidence               0000000      000000111 11111  1111111222222122222223333332 56899999888 777777


Q ss_pred             HHHHHHHHHHHHHHHHHhC--cchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccc
Q 043907          192 GGMGTVLAIISMILADKFG--RKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPL  269 (330)
Q Consensus       192 ~~~~~~~~~~~g~l~d~~g--rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (330)
                      ++.+.+.+....+..||.+  .+-.+..+...+.-..+.+...             ...........+..+..+ ...+.
T Consensus       307 Gl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~-------------~~~~~l~~~s~l~sf~~A-~~vt~  372 (451)
T KOG2615|consen  307 GLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLA-------------RTPVVLYLGSTLKSFSTA-SVVTC  372 (451)
T ss_pred             hHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcc-------------ccchhhhHHHHHHHHHHH-HhhHH
Confidence            7777777766666666654  2323333322222222222211             111222222222222222 22233


Q ss_pred             cccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhh
Q 043907          270 AWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCH  311 (330)
Q Consensus       270 ~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~  311 (330)
                      ...++....|+++||+.+|+....+.++-+++|.+.|.....
T Consensus       373 Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~W  414 (451)
T KOG2615|consen  373 LTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSW  414 (451)
T ss_pred             HHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence            345557889999999999999999999999999999876653

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.78  E-value=1.1e-16  Score=124.17  Aligned_cols=257  Identities=16%  Similarity=0.105  Sum_probs=183.4

Q ss_pred             CcchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc------------------------
Q 043907            1 SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------   56 (330)
Q Consensus         1 ~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------   56 (330)
                      +++..+++.|+|.++.+..++++..++.++-... +.+.++.+-.+.|.+.+...+                        
T Consensus        64 ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~~~mtglYs~s  142 (395)
T COG2807          64 APAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRVGLMTGLYSTS  142 (395)
T ss_pred             HhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccchhhHHhHHHHH
Confidence            4677899999999999999999999999998877 778888899999998888776                        


Q ss_pred             --------------ccCc-cchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHH
Q 043907           57 --------------IKGG-WGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDL  121 (330)
Q Consensus        57 --------------~~~~-~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  121 (330)
                                    +.++ .|||....+-+.++++.++.++.  ...|.   + .                         
T Consensus       143 l~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlP--q~~r~---~-~-------------------------  191 (395)
T COG2807         143 LGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLP--QALRE---Q-A-------------------------  191 (395)
T ss_pred             HHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhh--hcccc---c-c-------------------------
Confidence                          3333 37999998888888877766553  21110   0 0                         


Q ss_pred             HHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHH
Q 043907          122 IRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAII  201 (330)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  201 (330)
                          ...+....+-..+++++..+    ...+.+..+...++....|+|.++.+.|+++.+++ ...+...+.+++.++.
T Consensus       192 ----~~~~~~~~~~~~vw~~~~aW----~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG-~llsl~~l~~~~~~ll  262 (395)
T COG2807         192 ----ASIATKLVSVRKVWRSPLAW----QVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAG-SLLSLMQLAQLPTALL  262 (395)
T ss_pred             ----cccccccccccccccCchhH----HHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhh-hHHHHHHHHHHHHHHH
Confidence                00111112223345454333    34444445556678899999999999999999999 9999999999999999


Q ss_pred             HHHHHHHh-CcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccc-cccc
Q 043907          202 SMILADKF-GRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPS-EIFP  279 (330)
Q Consensus       202 ~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~p  279 (330)
                      ...+.+|. .+|+........+.++.+.+.+.           |.+..+..   ..+.+.+.+..+. +....+. +.-.
T Consensus       263 ~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~-----------P~~~~~lw---~~llG~G~G~~F~-laL~li~~rs~~  327 (395)
T COG2807         263 IPLLARRSKNQRPLVVLALLLMLVGLVGLLLA-----------PGQLPILW---ALLLGLGQGGAFP-LALTLILLRSSD  327 (395)
T ss_pred             HHHHHHHhcccchHHHHHHHHHHHHHHHHHHh-----------hhhHHHHH---HHHHhCccchHHH-HHHHHHHhhcCC
Confidence            99999974 56666666667777777666543           22222222   2334444443333 3333333 3345


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907          280 LEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK  313 (330)
Q Consensus       280 ~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g  313 (330)
                      +++.+.-.|+.+..+++....+|.+.|.+.|..|
T Consensus       328 a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g  361 (395)
T COG2807         328 AAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG  361 (395)
T ss_pred             hHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC
Confidence            6677888899999999999999999999999998

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.78  E-value=9.4e-17  Score=135.74  Aligned_cols=294  Identities=15%  Similarity=0.132  Sum_probs=167.3

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ-------------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~-------------------------   56 (330)
                      ++.|+++|.||||.+++.+.++..+|+++++.++|...++.+-.+.|+|.|....                         
T Consensus        96 ~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~  175 (599)
T PF06609_consen   96 PFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQELAALAISELVPNKWRGLGLAIASIPF  175 (599)
T ss_pred             HhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHH
Confidence            6789999999999999999999999999999999999999999999999887654                         


Q ss_pred             -------------ccCccchHHHHHhhhHHHHHHHHH--HhhcCCCchhhhccCCcHHHHHHHHHHH-------------
Q 043907           57 -------------IKGGWGWRISLAMAAAPASILTIG--AIFLPETPNSKIQRSDDHQKAQKMLQRI-------------  108 (330)
Q Consensus        57 -------------~~~~~~wr~~~~~~~~~~~~~~~~--~~~~pesp~~~~~~~~~~~~a~~~~~~~-------------  108 (330)
                                   +..+.+|||.|++..+...+.++.  .++.|++.+-+..++....+..+.++.+             
T Consensus       176 i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfL  255 (599)
T PF06609_consen  176 IITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFL  255 (599)
T ss_pred             HhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHH
Confidence                         344568999999988766555443  3334433211111111011111111111             


Q ss_pred             -----hcc---c-chhHHHHHHH---------HhccccccCcc--chHHhcccccchhHHHHHHHHHHHHhhhhHhHHHh
Q 043907          109 -----RGI---S-DVKAELNDLI---------RASSTSKSITQ--PFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLY  168 (330)
Q Consensus       109 -----~~~---~-~~~~~~~~~~---------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (330)
                           .+.   . +..+......         --.|.....+.  -..++++++   |.+.+.++..+.....++....+
T Consensus       256 lgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~---r~~~~~lvi~fi~G~~~~s~~~l  332 (599)
T PF06609_consen  256 LGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDR---RGFAALLVISFISGMNFFSVNIL  332 (599)
T ss_pred             HHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccc---hHHHHHHHHHHHHHHHHHHHHHH
Confidence                 000   0 0000000000         00011111111  123444331   23333333333333334454455


Q ss_pred             HHHHH-HhcCCCCc---hhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhh-hHhhHHHHHHHHHHHHHHHHHhCCCCCC
Q 043907          169 SPVLF-RTLKLGES---TSLLLSAVVAGGMGTVLAIISMILADKFGRKVLF-LVGGMQMLVSQVIIGSIMAAQLGDHGGC  243 (330)
Q Consensus       169 ~~~~~-~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (330)
                      .|... ..++-+..   ..+ +.....+.+...+..+.+.+..+++|-|.. +.+.+++.++.-.+...      +.   
T Consensus       333 ~p~~~~~vf~~d~~~~~~~~-~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~------~~---  402 (599)
T PF06609_consen  333 WPQQVVNVFGSDPISITEIG-WISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAV------RP---  402 (599)
T ss_pred             HHHHHhhhccCCCcccceee-hhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHc------cC---
Confidence            55544 33444432   345 667778888889999999999988876654 45554544433333322      00   


Q ss_pred             CcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhh
Q 043907          244 SEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCH  311 (330)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~  311 (330)
                      +..+..  .....+.+.+.+.... .....+.-..|++.-|++.|+..+++.+|+.++..+...+..+
T Consensus       403 ~n~~~~--i~~~~l~g~giG~~~~-~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~n  467 (599)
T PF06609_consen  403 DNKNAA--IAFLVLAGFGIGGILV-PAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFTN  467 (599)
T ss_pred             CCcchH--HHHHHHHHHhHHHHHH-HHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            111222  2223333333332222 2233445567999999999999999999999998888766543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.75  E-value=5.6e-16  Score=131.51  Aligned_cols=310  Identities=11%  Similarity=0.030  Sum_probs=169.1

Q ss_pred             cchhhhhhh-hchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc------------------------
Q 043907            2 LIASSVTRA-IGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------   56 (330)
Q Consensus         2 ~~~g~l~d~-~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------   56 (330)
                      +++|+++|| +|||+++.++.++.+++.++.+++++++.+.++|.+.|++.|...+                        
T Consensus        66 ~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~  145 (475)
T TIGR00924        66 SVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTL  145 (475)
T ss_pred             hhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehh
Confidence            578999999 8999999999999999999999999999999999999999987654                        


Q ss_pred             ------------------ccCccchHHHHHhhhHHHHHHHHHHhhcC----CCchhhhccCCcHHHHHHHHHHH------
Q 043907           57 ------------------IKGGWGWRISLAMAAAPASILTIGAIFLP----ETPNSKIQRSDDHQKAQKMLQRI------  108 (330)
Q Consensus        57 ------------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~p----esp~~~~~~~~~~~~a~~~~~~~------  108 (330)
                                        +.+..|||+.|.+.++..++..+..++.+    +.|+.  ++..+.++.+...+..      
T Consensus       146 ~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  223 (475)
T TIGR00924       146 FYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSV--PDPLSGQGKTYGKLLLALLAAL  223 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCC--CCCcchhhhhhHHHHHHHHHHH
Confidence                              44556899999887765444444333333    22210  0000011100000000      


Q ss_pred             ---------hcccchhHHHHHH-----HHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH
Q 043907          109 ---------RGISDVKAELNDL-----IRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFR  174 (330)
Q Consensus       109 ---------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (330)
                               ...+.........     .....++.. +....+..+++  ...++...+.....+..+....+..+.+.+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~  300 (475)
T TIGR00924       224 ALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAF-KPRLDAVARNK--MYAYIVLFLEAVVFWVLYAQMPTSLNFFAD  300 (475)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH-hccCCHHHHhH--HHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence                     0000000000000     000000000 00000010111  111222222222223333344444454443


Q ss_pred             h-cCCCC----chhhHHHHHHHHHHHHHHHHHHHHHHHHhCcc-----hhh--hHhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043907          175 T-LKLGE----STSLLLSAVVAGGMGTVLAIISMILADKFGRK-----VLF--LVGGMQMLVSQVIIGSIMAAQLGDHGG  242 (330)
Q Consensus       175 ~-~g~~~----~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr-----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (330)
                      + .+.+.    -..+ ++.+...+..++..++..++..|.+||     ...  .+|.++.+++...+.+....  .++  
T Consensus       301 ~~~~~~~~~~~ip~~-~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~--~~~--  375 (475)
T TIGR00924       301 NNMHHEMLGMSVPVI-WFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWF--ADA--  375 (475)
T ss_pred             HhccccccceEECHH-HHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhh--cCC--
Confidence            3 22221    1134 566777777777776655544444443     333  56777777766665543111  111  


Q ss_pred             CCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHH
Q 043907          243 CSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFG  321 (330)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~  321 (330)
                      ....+.++.+....+...+. ....|....++.|..|++.||+.+|+......+|..+++.+.....+..++ +.|...+
T Consensus       376 ~~~~s~~~~i~~~~~~~~ge-~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~  454 (475)
T TIGR00924       376 GGLTSPWFMVLIYLFQTLGE-LMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIG  454 (475)
T ss_pred             CCccCHHHHHHHHHHHHHHH-HHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHH
Confidence            11234455555555555554 344566677788999999999999999999999999999888877666553 3443333


Q ss_pred             H
Q 043907          322 G  322 (330)
Q Consensus       322 ~  322 (330)
                      .
T Consensus       455 ~  455 (475)
T TIGR00924       455 L  455 (475)
T ss_pred             H
Confidence            3

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.75  E-value=6.2e-16  Score=131.27  Aligned_cols=293  Identities=10%  Similarity=0.025  Sum_probs=158.2

Q ss_pred             cchhhhhhh-hchhHHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHhhcccccccc-----------------------
Q 043907            2 LIASSVTRA-IGRKVSILIGGVAFLADSAYGGSAFNIYM-LIFGRLLLGVGIGFGNQ-----------------------   56 (330)
Q Consensus         2 ~~~g~l~d~-~Grk~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~r~l~G~~~g~~~~-----------------------   56 (330)
                      +++|+++|| +||||++..+.+++.++++.++++++... +.++|.++|+|.|...+                       
T Consensus        68 ~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~  147 (489)
T PRK10207         68 SIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTL  147 (489)
T ss_pred             hhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhH
Confidence            578999999 99999999999999999999999876544 55899999999998876                       


Q ss_pred             ------------------ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhh--ccCCcHHHHHHHH-----------
Q 043907           57 ------------------IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKI--QRSDDHQKAQKML-----------  105 (330)
Q Consensus        57 ------------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~--~~~~~~~~a~~~~-----------  105 (330)
                                        +.+..|||+.|++.++..++.++.....++..+...  .++++.|.....+           
T Consensus       148 ~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~  227 (489)
T PRK10207        148 FYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFV  227 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHH
Confidence                              556679999998865533333333333332211000  0011011100000           


Q ss_pred             -HHHhcccchhHHHHHHH----H--hccccccCccchHHhcccccchhHHHHHHHH--HHHHhhhhHhHHHhHHHHHHh-
Q 043907          106 -QRIRGISDVKAELNDLI----R--ASSTSKSITQPFKNIIQRKYRPQPVMAILIP--FFQQVTGINIVGLYSPVLFRT-  175 (330)
Q Consensus       106 -~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-  175 (330)
                       ....+..+.........    .  -..++.+.+    +.+|+    +.+..+.+.  ....+..+....+..+.+.++ 
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~~----~~~r~----r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~  299 (489)
T PRK10207        228 CAWLMHNVEVANLVLIVLSIVVTIIFFREAFKLD----KTGRN----KMFVAFVLMLEAVVFYILYAQMPTSLNFFAINN  299 (489)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCC----HHHHH----HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHh
Confidence             00000000000000000    0  000000000    12222    222222211  111222223333444555542 


Q ss_pred             c-----CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchh-------hhHhhHHHHHHHHHHHHHHHHHhCCCCCC
Q 043907          176 L-----KLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVL-------FLVGGMQMLVSQVIIGSIMAAQLGDHGGC  243 (330)
Q Consensus       176 ~-----g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (330)
                      .     |+... .. .......+..++..++.+++.||.++|+.       +..|.++.+++.+.+....... ...  .
T Consensus       300 ~~~~~~G~~i~-~~-~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~-~~~--~  374 (489)
T PRK10207        300 VHHEILGFSIN-PV-SFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWF-ADA--Q  374 (489)
T ss_pred             ccccccceEEC-HH-HHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhh-cCC--C
Confidence            2     22211 12 34445556677888889999999998873       5667777666654443211111 111  0


Q ss_pred             CcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhH
Q 043907          244 SEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPM  308 (330)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~  308 (330)
                      ...+.++......+.+.+.... .|....++.+..|++.+|.++|+.+....+|+.++..+....
T Consensus       375 ~~~s~~~~i~~~~l~g~Ge~~~-~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~  438 (489)
T PRK10207        375 GLTSPWFIVLVYLFQSLGELFI-SALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFT  438 (489)
T ss_pred             CccCHHHHHHHHHHHHHHHHHH-hHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            1223344444445555554433 344455667889999999999999999999999988877544

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.74  E-value=1.2e-15  Score=125.69  Aligned_cols=264  Identities=16%  Similarity=0.079  Sum_probs=167.0

Q ss_pred             cchhhhhhhhc-hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc---------------------ccC
Q 043907            2 LIASSVTRAIG-RKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ---------------------IKG   59 (330)
Q Consensus         2 ~~~g~l~d~~G-rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~---------------------~~~   59 (330)
                      +++|.++||++ +||.+.++.++.++........++++.+++.-++..+......|                     +-.
T Consensus        55 ~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~~~~YG~iRlwG  134 (400)
T PF03825_consen   55 PFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGDRGKDYGRIRLWG  134 (400)
T ss_pred             HHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccCCCCcchhhh
Confidence            57899999986 57888888888888777777788888888877777776655555                     000


Q ss_pred             ccch--------------------HHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHH
Q 043907           60 GWGW--------------------RISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELN  119 (330)
Q Consensus        60 ~~~w--------------------r~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  119 (330)
                      ..||                    .+.+++.+...++.....+.+|+.|+   +++.  ++                   
T Consensus       135 SiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~lp~~~~---~~~~--~~-------------------  190 (400)
T PF03825_consen  135 SIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALFLPKTPP---KRSA--KE-------------------  190 (400)
T ss_pred             hHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHhCCCCcc---cccc--CC-------------------
Confidence            1111                    12233333333333333445677652   0100  00                   


Q ss_pred             HHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcC-CCCchhhHHHHHHHHHHHHHH
Q 043907          120 DLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLK-LGESTSLLLSAVVAGGMGTVL  198 (330)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~  198 (330)
                            +.++....+..+++|++.....    .+..+...........+.+.+.++.| .+....+ ...++..+.+++.
T Consensus       191 ------~~~~~~~~~~~~llk~~~~~~F----ll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g-~~~~l~~~aEi~~  259 (400)
T PF03825_consen  191 ------SVKKLLGLDALKLLKNPRFLVF----LLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIG-ILWALGVVAEIPF  259 (400)
T ss_pred             ------CcccccchHHHHHhcCccHHHH----HHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHH-HHHHHHHHHHHHH
Confidence                  0011111223345554433322    22222233344566677888888887 6767666 6777888999999


Q ss_pred             HHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHH----HHhhccccccccccccccc
Q 043907          199 AIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLV----CLCSSGYCYSWGPLAWLVP  274 (330)
Q Consensus       199 ~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  274 (330)
                      -...+++..|+|.|+++.++.....+=..++....            ++.+......    .+-+..++..+. ....++
T Consensus       260 f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~------------~~~~~~~~~~~l~q~lhG~tf~~~~~-a~~~yi  326 (400)
T PF03825_consen  260 FFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFS------------DPWPFIVALQLLGQLLHGLTFGLFHA-ASVRYI  326 (400)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc------------CCcHHHHHHHHHHHhhhhHHHHHHHH-HHHHHH
Confidence            99999999999999999999888777766665531            1112222222    223333333333 445677


Q ss_pred             ccccchhhhhhhhhHHHHH-HHHHHHHHHHhhhhHHhhcc
Q 043907          275 SEIFPLEIRSAGQSITVAV-NFVFTFLTAQTFLPMLCHFK  313 (330)
Q Consensus       275 ~e~~p~~~r~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g  313 (330)
                      .|..|++.|++++++.+.. ..+|..+++.+.|.+.|+.|
T Consensus       327 ~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g  366 (400)
T PF03825_consen  327 DRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFG  366 (400)
T ss_pred             HHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence            8999999999999998765 56899999999999999987

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.71  E-value=1.5e-15  Score=119.65  Aligned_cols=270  Identities=16%  Similarity=0.153  Sum_probs=170.7

Q ss_pred             CcchhhhhhhhchhHHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHhhcccccccc--------ccCc--cc-----
Q 043907            1 SLIASSVTRAIGRKVSILIGGVAFLADSAYGG---SAFNIYMLIFGRLLLGVGIGFGNQ--------IKGG--WG-----   62 (330)
Q Consensus         1 ~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~r~l~G~~~g~~~~--------~~~~--~~-----   62 (330)
                      ++..|++.+|+|+|+.++.+..++++++.+..   -..++..++++-++.|.|.+...+        +.+.  ..     
T Consensus        65 ~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl  144 (422)
T COG0738          65 SLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNL  144 (422)
T ss_pred             hccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHH
Confidence            46789999999999999999999999999884   457889999999999999998776        1111  11     


Q ss_pred             -------------------------------------------hHHHHHhhhHHHHHHHHHHhh--cCCCchhhhccCCc
Q 043907           63 -------------------------------------------WRISLAMAAAPASILTIGAIF--LPETPNSKIQRSDD   97 (330)
Q Consensus        63 -------------------------------------------wr~~~~~~~~~~~~~~~~~~~--~pesp~~~~~~~~~   97 (330)
                                                                 ||++|...+...++..+....  .||.+         
T Consensus       145 ~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~---------  215 (422)
T COG0738         145 AQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQ---------  215 (422)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCC---------
Confidence                                                       222222222221111111111  11110         


Q ss_pred             HHHHHHHHHHHhcccchhHHHHHHHHhccccccC-ccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHh-
Q 043907           98 HQKAQKMLQRIRGISDVKAELNDLIRASSTSKSI-TQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRT-  175 (330)
Q Consensus        98 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  175 (330)
                                               ...+++.+. +....+++++++.+.-.+..++    ....-.....+++.+..+ 
T Consensus       216 -------------------------~~~~~~~~~~~~~~~~l~~~~~~~~gvl~~Fl----YVG~Eva~gsfl~~y~~~~  266 (422)
T COG0738         216 -------------------------VAAPSLGASGSAGLSSLFQNKHLRLGVLAIFL----YVGAEVAIGSFLVSYLEEL  266 (422)
T ss_pred             -------------------------cccccccccccchHHHHHhChHHHHHHHHHHH----HHhHHHHHHHHHHHHHHhc
Confidence                                     000001111 1135566665544443333333    333445667788888866 


Q ss_pred             cCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHH
Q 043907          176 LKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLV  255 (330)
Q Consensus       176 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (330)
                      .|.++.++. ...+....+.++|++++.++..|+...|.+....+...+.++...+.             + ....+...
T Consensus       267 ~g~~~~~aa-~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~-------------~-g~v~~~~l  331 (422)
T COG0738         267 LGLNEQQAA-YYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALI-------------G-GVVALYAL  331 (422)
T ss_pred             CCccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh-------------c-ChHHHHHH
Confidence            788888888 88999999999999999999999999998887776666655555554             1 13334444


Q ss_pred             HHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc-chhHHHHHHHHHH
Q 043907          256 CLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK-AGIFFFFGGLVLI  326 (330)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~  326 (330)
                      ...+.+.+..+ |.......+..| ++-..+.++ ..+...|+++.|++.|++.|..| ...+......|.+
T Consensus       332 ~~ig~F~simf-PTIfslal~~l~-~~ts~~s~~-l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~l  400 (422)
T COG0738         332 FLIGLFNSIMF-PTIFSLALKNLG-EHTSVGSGL-LVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYL  400 (422)
T ss_pred             HHHHHHhHHHH-HHHHHHHHhccC-cccccccee-eeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            44444444444 454556567777 444444443 44566899999999999999998 3444444444433

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.70  E-value=2.6e-15  Score=112.59  Aligned_cols=137  Identities=10%  Similarity=0.048  Sum_probs=98.3

Q ss_pred             hhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHH-HHHHHHHHHHHh
Q 043907          160 TGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVS-QVIIGSIMAAQL  237 (330)
Q Consensus       160 ~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~-~~~~~~~~~~~~  237 (330)
                      .....+....|.++ +++|+++..++ .+.+.......+.+++.|.++||+|++...+.+..+..+. -..+.+..    
T Consensus       278 va~fPFi~lg~~fF~~rfGlS~~~a~-~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~----  352 (459)
T KOG4686|consen  278 VAWFPFITLGPMFFQKRFGLSAVSAG-NILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTF----  352 (459)
T ss_pred             HHHHHHhhhhHHHHHHhhCCChhhcc-chhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhh----
Confidence            44455556667776 56899999988 7778788888899999999999999998877665544433 23333321    


Q ss_pred             CCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907          238 GDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK  313 (330)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g  313 (330)
                              .+.+..   .++.+..++.... ..|.+++.+.|+++-|++.|..+...+++-++.|.+.+.+.|+.|
T Consensus       353 --------lsPy~~---m~~lGLsysllAc-slWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g  416 (459)
T KOG4686|consen  353 --------LSPYTS---MTFLGLSYSLLAC-SLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG  416 (459)
T ss_pred             --------ccHHHH---HHHHhhhHHHHHH-HHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence                    233332   2333333332222 235566788899999999999999999999999999999999877

>PTZ00207 hypothetical protein; Provisional

Probab=99.70  E-value=1.2e-15  Score=129.95  Aligned_cols=307  Identities=12%  Similarity=0.055  Sum_probs=179.8

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhh------hhHHHHHHHHHHhhcccccccc-------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSA------FNIYMLIFGRLLLGVGIGFGNQ-------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~r~l~G~~~g~~~~-------------------   56 (330)
                      ++.|++.||+|||+++.++.+++.++.++++++      ++++.+++.|++.|+|.+...+                   
T Consensus        79 lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~a~G  158 (591)
T PTZ00207         79 LPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVA  158 (591)
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHH
Confidence            368999999999999999999999999999997      6899999999999999886654                   


Q ss_pred             -------------------ccCccchHHHHHhhhHHHHHHHHH-Hhh--cCCCchhhhccCCcHHHHHHHHHHHhcc---
Q 043907           57 -------------------IKGGWGWRISLAMAAAPASILTIG-AIF--LPETPNSKIQRSDDHQKAQKMLQRIRGI---  111 (330)
Q Consensus        57 -------------------~~~~~~wr~~~~~~~~~~~~~~~~-~~~--~pesp~~~~~~~~~~~~a~~~~~~~~~~---  111 (330)
                                         +.. .+|+..|++.++..++..+. ..+  .|++|++..++++ .+++++..++..+.   
T Consensus       159 i~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~-~~~~~~~~~~~~~~~y~  236 (591)
T PTZ00207        159 IMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKH-LDEEEKAQRLMRKGVYL  236 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccC-CCHHHHHHHhhhhhhhh
Confidence                               111 36887777766655554333 333  4555555433332 22222221110000   


Q ss_pred             ------------------------------------c----------------------------------chhHHHHHH
Q 043907          112 ------------------------------------S----------------------------------DVKAELNDL  121 (330)
Q Consensus       112 ------------------------------------~----------------------------------~~~~~~~~~  121 (330)
                                                          .                                  +.+.+.++.
T Consensus       237 ~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~  316 (591)
T PTZ00207        237 KQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEH  316 (591)
T ss_pred             hcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCcccccccc
Confidence                                                0                                  000000000


Q ss_pred             -H--Hhccccc--------c-C----ccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhc-CCCCch-h
Q 043907          122 -I--RASSTSK--------S-I----TQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTL-KLGEST-S  183 (330)
Q Consensus       122 -~--~~~~~~~--------~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~-~  183 (330)
                       +  .+..+++        + .    ..++.+.+    .+.-++..+..+++....-......+.++.+.. |.+.+. .
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l----~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~  392 (591)
T PTZ00207        317 VEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGL----KTARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDAL  392 (591)
T ss_pred             ccccccccccccccccccccCCCCCCcchHHHHH----hchhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccc
Confidence             0  0000000        0 0    00222222    234455555555555555566677788888888 773333 2


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCcch--------hhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHH
Q 043907          184 LLLSAVVAGGMGTVLAIISMILADKFGRKV--------LFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLV  255 (330)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (330)
                      .....++.++++.+|.+..|.+.....+|+        ..+....++.++.+++....          +   .....+..
T Consensus       393 ~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~~~~~~lll~~~~----------p---~~~L~~~~  459 (591)
T PTZ00207        393 NTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSVCIITMLTLFLTL----------P---KAALPLPY  459 (591)
T ss_pred             eeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHC----------C---ccHhHHHH
Confidence            203678889999999999998873333222        22222222333333333321          1   12344445


Q ss_pred             HHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHH-HHhhhhHHhhc----------c----chhHHHH
Q 043907          256 CLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLT-AQTFLPMLCHF----------K----AGIFFFF  320 (330)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~----------g----~~~~~~~  320 (330)
                      .+.+.+++..++ +....++|+|. ++-|+-+-+.....-+|+.+. ..+.|.++|.-          |    ..+|.+.
T Consensus       460 ~lvg~~~G~~~~-~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~  537 (591)
T PTZ00207        460 FIAAFANGFMAA-TIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFL  537 (591)
T ss_pred             HHHHHHhhHhHH-HHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHH
Confidence            555556666665 44556689999 888988888888888888877 66778888652          1    1377888


Q ss_pred             HHHHHHhhc
Q 043907          321 GGLVLIMTS  329 (330)
Q Consensus       321 ~~~~~~~~~  329 (330)
                      +++|.++.+
T Consensus       538 ~~~~~~g~~  546 (591)
T PTZ00207        538 LGLSFLAFI  546 (591)
T ss_pred             HHHHHHHHH
Confidence            888777653

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.69  E-value=8.2e-15  Score=123.00  Aligned_cols=175  Identities=15%  Similarity=0.092  Sum_probs=119.1

Q ss_pred             hHHHHHHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcc--hhhhHhhHHH
Q 043907          146 QPVMAILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRK--VLFLVGGMQM  222 (330)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr--~~~~~~~~~~  222 (330)
                      +....+++..+....+...+......+.+ ++|++..+.. .......+..++|+++.+++.||+|.|  +++..+....
T Consensus       281 ~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~-~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~  359 (477)
T PF11700_consen  281 RQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLI-VFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILW  359 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence            33444555555555666777777777775 7899999988 888899999999999999999999999  7766665555


Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHH
Q 043907          223 LVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTA  302 (330)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~  302 (330)
                      .+..+.-.+-..  ..   .....+.+...++..+.+...+ +..+..-++.+|+.|+++.+..+|+....+...++++|
T Consensus       360 ~~i~~~g~~G~~--~~---~~g~~~~~~f~~~a~~~G~~~G-~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGP  433 (477)
T PF11700_consen  360 IIIPLYGLFGFW--PS---FFGLKSPWEFWVLAVLIGLFMG-GIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGP  433 (477)
T ss_pred             HHHHHHHHHHhh--hc---ccCcccHHHHHHHHHHHHHHhh-hHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHH
Confidence            332222111000  00   0011333444444444444443 33446667779999999999999999999999999999


Q ss_pred             HhhhhHHhhcc--chhHHHHHHHHHHh
Q 043907          303 QTFLPMLCHFK--AGIFFFFGGLVLIM  327 (330)
Q Consensus       303 ~~~~~~~~~~g--~~~~~~~~~~~~~~  327 (330)
                      .+.+.+.+..|  ...+....++.+++
T Consensus       434 ll~g~i~~~tg~~r~g~~~l~~lf~~g  460 (477)
T PF11700_consen  434 LLFGLITDATGSQRYGFLFLLVLFLIG  460 (477)
T ss_pred             HHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence            99999999887  24444444444333

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.69  E-value=2.7e-15  Score=126.37  Aligned_cols=164  Identities=15%  Similarity=0.215  Sum_probs=113.1

Q ss_pred             ccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHh-cCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 043907          132 TQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRT-LKLGESTSLLLSAVVAGGMGTVLAIISMILADKFG  210 (330)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g  210 (330)
                      ++.+++.++++..+..+..    .+....+........+++.+. .|.+ +..+ .......+..+++.++.++++||+|
T Consensus       215 ~~~~~~~~~nr~~~~l~~~----~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~-~~~~~~~~~~~v~~~~~~~l~~r~g  288 (428)
T PF13347_consen  215 RDSLRSLFRNRPFRILLLA----FFLQWLAFALMNTFLPYYFTYVLGNE-GLIS-IFMLIFFVASIVGSPLWGRLSKRFG  288 (428)
T ss_pred             ccchhhhcccchHHHHHHH----HHHHHhhhhhhhhHHHHHHHHHhcCc-hhhH-HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            3445555554433333332    333333444445555556554 3444 4444 6677888999999999999999999


Q ss_pred             cchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccch-------hhh
Q 043907          211 RKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPL-------EIR  283 (330)
Q Consensus       211 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-------~~r  283 (330)
                      +|+.+..+..+.+++.+.+.+.           ++.+.+...+...+.+.+.+..+ ...+.+.+|..+.       +..
T Consensus       289 k~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~i~~~l~gi~~~~~~-~~~~a~~ad~id~~e~~tg~r~~  356 (428)
T PF13347_consen  289 KKKVYIIGLLLAALGFLLLFFL-----------GPGSPWLVLILFILAGIGYGAFF-VIPWAMLADVIDYDEWKTGRRRE  356 (428)
T ss_pred             ceeehhhhHHHHHHHHHHHHHH-----------HhhhHHHHHHHHHHhHhhhcccc-cccccccccchhhHHHhcCCCch
Confidence            9999999999998888877665           22455556666666666665444 4667777888763       335


Q ss_pred             hhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907          284 SAGQSITVAVNFVFTFLTAQTFLPMLCHFK  313 (330)
Q Consensus       284 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g  313 (330)
                      |...|+.+....++..+++.+.+.+.+..|
T Consensus       357 g~~~s~~~~~~k~~~~la~~i~g~~l~~~G  386 (428)
T PF13347_consen  357 GMYFSVNSFFIKIGQGLAGAIVGLLLALVG  386 (428)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence            888899999999999999999998887655

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.64  E-value=6.6e-16  Score=134.75  Aligned_cols=214  Identities=14%  Similarity=0.123  Sum_probs=131.8

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhh----------------------------------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAF----------------------------------------------   35 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~----------------------------------------------   35 (330)
                      ++.|+++||+|||+.+.++.++++++++++++.+                                              
T Consensus        86 i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~  165 (633)
T TIGR00805        86 IFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQ  165 (633)
T ss_pred             HHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccc
Confidence            5689999999999999999999999999987753                                              


Q ss_pred             -----hHHHHHHHHHHhhcccccccc---------------------------------------ccCc-----------
Q 043907           36 -----NIYMLIFGRLLLGVGIGFGNQ---------------------------------------IKGG-----------   60 (330)
Q Consensus        36 -----~~~~~~~~r~l~G~~~g~~~~---------------------------------------~~~~-----------   60 (330)
                           .+..++++|+++|+|.+...+                                       +.+.           
T Consensus       166 ~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~  245 (633)
T TIGR00805       166 HKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTED  245 (633)
T ss_pred             cCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCC
Confidence                 245778999999999998876                                       1111           


Q ss_pred             -----------cchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHHHHhccccc
Q 043907           61 -----------WGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLIRASSTSK  129 (330)
Q Consensus        61 -----------~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (330)
                                 .+||..|++.+++.++..+..+++||..+....+.+ .++.++.  ..+..+  ++...   +..+..+
T Consensus       246 ~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~lp~~~~~~~-~~~~~~~--~~~~~~--~~~~~---~~~~~~~  317 (633)
T TIGR00805       246 VILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKALPKEGKRVN-VDVHETE--KLEKSE--DKSRK---KNSDITK  317 (633)
T ss_pred             CCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCcccccc-hhhhhhh--cccccc--cccch---hhhhhHH
Confidence                       037778888887777766656667664320000000 0000000  000000  00000   0000000


Q ss_pred             cCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCchhhHHHHHHHHH-HHHHHHHHHHHHHH
Q 043907          130 SITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSAVVAGG-MGTVLAIISMILAD  207 (330)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d  207 (330)
                      +....+++++++    +.++...+..+........+..++|.+++ .+|+++.+++ .......+ +.+++.+++|+++|
T Consensus       318 ~~~~~~~~Ll~n----~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag-~l~~~~~i~~~~vG~~l~G~l~~  392 (633)
T TIGR00805       318 DFPKIIKRLLCN----PIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEAN-FLIGVVNLPAAGLGYLIGGFIMK  392 (633)
T ss_pred             HHHHHHHHHHcC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH-HHhhhhhhhHHHHHHhhhhheee
Confidence            011223344433    45555555555556667788889999986 5899998888 66665554 56899999999999


Q ss_pred             HhCc--chhhhHhhHHHHHHHHH
Q 043907          208 KFGR--KVLFLVGGMQMLVSQVI  228 (330)
Q Consensus       208 ~~gr--r~~~~~~~~~~~~~~~~  228 (330)
                      |+++  |+.+..+.+...++.+.
T Consensus       393 r~~~~~~~~~~~~~~~~~~~~~~  415 (633)
T TIGR00805       393 KFKLNVKKAAYFAICLSTLSYLL  415 (633)
T ss_pred             eecccHHHHHHHHHHHHHHHHHH
Confidence            9884  45666666555555433

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.64  E-value=5.2e-14  Score=120.30  Aligned_cols=290  Identities=10%  Similarity=0.071  Sum_probs=147.4

Q ss_pred             cchhhhhhh-hchhHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHhhcccccccc-----------------------
Q 043907            2 LIASSVTRA-IGRKVSILIGGVAFLADSAYGGSAF-NIYMLIFGRLLLGVGIGFGNQ-----------------------   56 (330)
Q Consensus         2 ~~~g~l~d~-~Grk~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~~g~~~~-----------------------   56 (330)
                      +++|+++|| +|||+.+..+.++..++..++++++ +.+.+.++|.++|++.|...+                       
T Consensus        75 ~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~  154 (500)
T PRK09584         75 AIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTM  154 (500)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchH
Confidence            468999999 5999999999999999999998874 566777899999999887554                       


Q ss_pred             ------------------ccCccchHHHHHhhhHHHHHHHHHH----hhcCCCchhhhccCCcHHHHHHHH---------
Q 043907           57 ------------------IKGGWGWRISLAMAAAPASILTIGA----IFLPETPNSKIQRSDDHQKAQKML---------  105 (330)
Q Consensus        57 ------------------~~~~~~wr~~~~~~~~~~~~~~~~~----~~~pesp~~~~~~~~~~~~a~~~~---------  105 (330)
                                        +.+..|||+.|.+.++..++..+..    ..++|.++- .++++ .|......         
T Consensus       155 ~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~  232 (500)
T PRK09584        155 YYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSK-PDFEP-INYRKLLLTIVGVVALI  232 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCC-CCccc-cchhhHHHHHHHHHHHH
Confidence                              5566799999998775444433222    223433110 00000 11100000         


Q ss_pred             --HH-HhcccchhHHHHHHHHhccccccCccchHHh--cccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH-----h
Q 043907          106 --QR-IRGISDVKAELNDLIRASSTSKSITQPFKNI--IQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFR-----T  175 (330)
Q Consensus       106 --~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~  175 (330)
                        .. .....+...............    ...++.  .++..+++....+.+...  ...++......+..+.     +
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~f~~~~~q~~~~l~~~~~~~  306 (500)
T PRK09584        233 AIATWLLHNQEIARMALGVVALGIVV----IFGKEAFAMKGAARRKMIVAFILMLE--AIIFFVLYSQMPTSLNFFAIRN  306 (500)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHH----HHHHHHhhcCHHHHHHHHHHHHHHHH--HHHHHHHHHHhccHHHHHHHHh
Confidence              00 000000000000000000000    000000  001111222222211111  1112222222222221     1


Q ss_pred             c-----CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcc----hhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcc
Q 043907          176 L-----KLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRK----VLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEG  246 (330)
Q Consensus       176 ~-----g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (330)
                      .     |+. .... +..+...+..++..++..++-+|.++|    +.+.++..+.+++...+......  .+  .....
T Consensus       307 ~~~~~~g~~-i~~~-~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~--~~--~~~~v  380 (500)
T PRK09584        307 VEHSILGIA-VEPE-QYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKF--AN--DAGIV  380 (500)
T ss_pred             ccccccceE-ECHH-HHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHh--cC--CCCcc
Confidence            1     111 1133 455666666666766665555555544    55677777777777766554211  00  01112


Q ss_pred             hhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhh
Q 043907          247 YAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFL  306 (330)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~  306 (330)
                      +.++......+.+.+ .....|....++.+..|++.||+.+|+......+++.++..+..
T Consensus       381 s~~~~~~~~~l~~~g-e~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~  439 (500)
T PRK09584        381 SVNWLIASYGLQSIG-ELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVAN  439 (500)
T ss_pred             CHHHHHHHHHHHHHH-HHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            233444444444444 34455666777789999999999999887666667766666654

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.63  E-value=1.4e-14  Score=123.48  Aligned_cols=144  Identities=17%  Similarity=0.109  Sum_probs=89.6

Q ss_pred             hhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCC
Q 043907          160 TGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGD  239 (330)
Q Consensus       160 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (330)
                      ........+.+++.+....++...+ .......+..+++.++.+++.||+|+|+.+..+..+..++.+.+......    
T Consensus       245 ~~~~~~~~~~~y~~~y~~~~~~~~~-~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~----  319 (473)
T PRK10429        245 IASNIINGFAIYYFTYVIGDADLFP-YYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLA----  319 (473)
T ss_pred             HHHHHHhhheeeEEEEECCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhcc----
Confidence            3444444455545444333344444 55666678889999999999999999999887776655554443322100    


Q ss_pred             CCCCCcchhHHHHHHHHHhhcccccccccccccccccccc-------hhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhc
Q 043907          240 HGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFP-------LEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHF  312 (330)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  312 (330)
                          ++.+.+...+...+.+.+.+... +..+++++|..+       .+..|...|.......++..+++.+.+.+.+..
T Consensus       320 ----~~~~~~~~~i~~~l~g~~~~~~~-~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~  394 (473)
T PRK10429        320 ----APHNALLIVIAGILLNIGTALFW-VLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLI  394 (473)
T ss_pred             ----CchhHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                11223333333333333433333 345566678755       333455888999999999999999999988765


Q ss_pred             c
Q 043907          313 K  313 (330)
Q Consensus       313 g  313 (330)
                      |
T Consensus       395 G  395 (473)
T PRK10429        395 G  395 (473)
T ss_pred             C
Confidence            5

>PRK09669 putative symporter YagG; Provisional

Probab=99.63  E-value=2.6e-14  Score=121.02  Aligned_cols=116  Identities=19%  Similarity=0.094  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccc
Q 043907          186 LSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYS  265 (330)
Q Consensus       186 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (330)
                      .......+..+++.++.+++.||+|+|+....+.....+....+...           +.++.+...+...+.+.+.+ .
T Consensus       268 ~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~i~g~~~~-~  335 (444)
T PRK09669        268 LFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFI-----------PPSNVWLIFALNILFNFIQN-L  335 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh-----------CcchHHHHHHHHHHHHHHHH-H
Confidence            44555667778888999999999999999887766555433322222           22333334444444444444 3


Q ss_pred             cccccccccccccc-------hhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907          266 WGPLAWLVPSEIFP-------LEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK  313 (330)
Q Consensus       266 ~~~~~~~~~~e~~p-------~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g  313 (330)
                      ..+..+.+++|..+       .+..|...+..+....++..+++.+.+.+.+..|
T Consensus       336 ~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G  390 (444)
T PRK09669        336 TTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD  390 (444)
T ss_pred             HHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            33566777778775       2234566788888899999999999999888765

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.62  E-value=5.4e-15  Score=120.65  Aligned_cols=286  Identities=10%  Similarity=0.085  Sum_probs=171.2

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ-------------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~-------------------------   56 (330)
                      ++.|.++||+|.|+++.++.+.+++.+++.++++++..+.+.|++.|++.|...+                         
T Consensus        80 Ip~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~  159 (511)
T TIGR00806        80 VPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAV  159 (511)
T ss_pred             HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999999999999999998776                         


Q ss_pred             ------------ccCccchHHHHH---hhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHH
Q 043907           57 ------------IKGGWGWRISLA---MAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDL  121 (330)
Q Consensus        57 ------------~~~~~~wr~~~~---~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  121 (330)
                                  ....+|||+.+.   +......+.++..+++|..++-+.-++++..+ .....+.+...+.+.  .+.
T Consensus       160 ~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~-~~~~~~~~~~~~~~~--~~~  236 (511)
T TIGR00806       160 LLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLALFLKRPKRSLFFNRLEDVR-GALPCELDQMVPGPG--GKL  236 (511)
T ss_pred             HHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCchhhhhccccccc-cccccccccCCCCCc--ccc
Confidence                        223468987544   44444445566677888666544333220110 000000000000000  000


Q ss_pred             HHhccccccCccc---hHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCc-hhhHHHHHHHHHHHHH
Q 043907          122 IRASSTSKSITQP---FKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGES-TSLLLSAVVAGGMGTV  197 (330)
Q Consensus       122 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~  197 (330)
                      .+  ..+......   +.+-++..++++.++-..+.+....++++.+.+|...+-++..-+++ -.+ ..-.+..+.+.+
T Consensus       237 ~~--~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG-~veA~~tllga~  313 (511)
T TIGR00806       237 ED--YLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNG-AVDAASTLLGAI  313 (511)
T ss_pred             ch--hhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCC-HHHHHHHHHHHH
Confidence            00  000000011   11112233445556666677777778888888888877766533222 334 677777888888


Q ss_pred             HHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccc
Q 043907          198 LAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEI  277 (330)
Q Consensus       198 ~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  277 (330)
                      .++..|++-.++.+..-+.++.....-+.+++...           ..++.|.......++...+..... +...-+++.
T Consensus       314 ~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~-----------~t~~Iw~~Y~~yvlf~~~y~flit-ia~~~iA~~  381 (511)
T TIGR00806       314 TSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMS-----------QSHDIWVLYVTYVLFRGIYQFLVP-IATFQIASS  381 (511)
T ss_pred             HHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhh-----------cccchHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            99999988555543333333333222222222211           125667777777777777665544 333333555


Q ss_pred             cchhhhhhhhhHHHHHHHHHHHHHHHhh
Q 043907          278 FPLEIRSAGQSITVAVNFVFTFLTAQTF  305 (330)
Q Consensus       278 ~p~~~r~~~~g~~~~~~~~~~~~~~~~~  305 (330)
                      ...+.-|..+|+.++..-+...+...+.
T Consensus       382 L~~~~~aLvFGiNtfvAl~LQtilT~iV  409 (511)
T TIGR00806       382 LSKELCALVFGINTFVATALKTIITAVV  409 (511)
T ss_pred             hcccceEEEEecHHHHHHHHHHheEEEE
Confidence            6666679999998888877776666554

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.62  E-value=1.1e-13  Score=110.18  Aligned_cols=150  Identities=15%  Similarity=0.137  Sum_probs=113.0

Q ss_pred             HHHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHH
Q 043907          150 AILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVI  228 (330)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~  228 (330)
                      .+.+..+....+.+........+-. ++|++..+.. .......+..++|+++.|++.||+|.|+++..+.++..+..+.
T Consensus       256 ~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~ll-l~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~  334 (438)
T COG2270         256 LFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELL-LIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALY  334 (438)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHH
Confidence            3444444444666777777777775 7899999998 8888999999999999999999999999998888877776665


Q ss_pred             HHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhH
Q 043907          229 IGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPM  308 (330)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~  308 (330)
                      ..+.             .......++..+.+...+ +..+..-.+..+..|+++-++.+|+++..++..++++|++.+..
T Consensus       335 ~~~~-------------~~~~~f~i~gll~g~s~G-~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~  400 (438)
T COG2270         335 LIFL-------------EGELDFWILGLLVGTSLG-GAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVI  400 (438)
T ss_pred             HHHc-------------cccHHHHHHHHHHHHhcc-hHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHH
Confidence            5543             112222222223332333 33345567778999999999999999999999999999999999


Q ss_pred             Hhhccc
Q 043907          309 LCHFKA  314 (330)
Q Consensus       309 ~~~~g~  314 (330)
                      .+..|.
T Consensus       401 t~iTg~  406 (438)
T COG2270         401 TQITGS  406 (438)
T ss_pred             HHHhcc
Confidence            998883

>TIGR01272 gluP glucose/galactose transporter

Probab=99.62  E-value=9.8e-14  Score=111.17  Aligned_cols=155  Identities=10%  Similarity=-0.012  Sum_probs=103.8

Q ss_pred             HHHHHHHHhhhhHhHHHhHHHHHHh---cCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHH
Q 043907          151 ILIPFFQQVTGINIVGLYSPVLFRT---LKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQV  227 (330)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~  227 (330)
                      ..+..+.....-.....|.+.++++   .|+++++.+ ...+....+.++|+++.+++.||+|+|+.+..+..+..++.+
T Consensus       145 ~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~-~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~  223 (310)
T TIGR01272       145 GALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAA-HFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSI  223 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence            3444444444456677888888854   488888888 889999999999999999999999999988777666665553


Q ss_pred             HHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhh
Q 043907          228 IIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLP  307 (330)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~  307 (330)
                      +....             +. ..........+.+.+..++ .......+..|++ .+++.++. ..+.+|+.+.|.+.|.
T Consensus       224 l~~~~-------------~~-~~~~~~~~l~g~~~s~i~P-~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~  286 (310)
T TIGR01272       224 GAALT-------------HG-YVAMWFVLALGLFNSIMFP-TIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGS  286 (310)
T ss_pred             HHHHc-------------CC-HHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHH
Confidence            33221             11 1122233334444443333 3344445666643 56667775 5677999999999999


Q ss_pred             HHhhcc-chhHHHHHHH
Q 043907          308 MLCHFK-AGIFFFFGGL  323 (330)
Q Consensus       308 ~~~~~g-~~~~~~~~~~  323 (330)
                      +.|..| ..++++...+
T Consensus       287 lad~~g~~~a~~v~~~~  303 (310)
T TIGR01272       287 LADCLGIQLAFALPVPC  303 (310)
T ss_pred             HHHhccchHHHHHHHHH
Confidence            999888 4555544433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.61  E-value=1.1e-13  Score=115.57  Aligned_cols=165  Identities=8%  Similarity=-0.036  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHhhhhHhHHHhHHHHHH-h-cCCCCc------hh---hHHHHHHHHHHHHHHHHHHHHHHHHhCc-chhh
Q 043907          148 VMAILIPFFQQVTGINIVGLYSPVLFR-T-LKLGES------TS---LLLSAVVAGGMGTVLAIISMILADKFGR-KVLF  215 (330)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~g~~~~------~~---~~~~~~~~~~~~~~~~~~~g~l~d~~gr-r~~~  215 (330)
                      +...++..+..+.+...+..|.+.+.. + ++-++.      +.   +.+......+...+.+++..++.+|+|+ |+..
T Consensus       260 m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~  339 (477)
T TIGR01301       260 VWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLW  339 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHH
Confidence            333444444455666667777766653 2 332221      11   2244455566666777788889999985 6666


Q ss_pred             hHhhHHHHHHHHHHHHHHHHHhC--CC----C-CCCc-chhHHHHHHHHHhhcccccccccccccccccccchh--hhhh
Q 043907          216 LVGGMQMLVSQVIIGSIMAAQLG--DH----G-GCSE-GYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLE--IRSA  285 (330)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~--~~----~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~  285 (330)
                      ..+.++.++++....+......+  +.    . ..++ ...+..+......+..++... .++++++++..|++  ..|.
T Consensus       340 ~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~-siPfal~s~~~~~~~~~~G~  418 (477)
T TIGR01301       340 GIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITY-SIPFALASIRSSNLGAGQGL  418 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHH-HHhHHHHHHHccccCCCCcc
Confidence            77877777777766654221100  00    0 0011 112445555555555555443 37788888888854  4599


Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907          286 GQSITVAVNFVFTFLTAQTFLPMLCHFK  313 (330)
Q Consensus       286 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g  313 (330)
                      .+|+.|.+..+.+.+.....|.+.+..|
T Consensus       419 ~mgilN~~I~lpQii~sl~~g~~~~~~g  446 (477)
T TIGR01301       419 SMGVLNLAIVIPQIIVSLGSGPWDQLFG  446 (477)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999998888766666

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.60  E-value=7.4e-14  Score=113.19  Aligned_cols=153  Identities=13%  Similarity=0.121  Sum_probs=108.3

Q ss_pred             hhhHhHHHhHHHHHHhc----CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHH
Q 043907          160 TGINIVGLYSPVLFRTL----KLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAA  235 (330)
Q Consensus       160 ~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~  235 (330)
                      ..++......+.+++.+    +.+....+ ...+...+.+.+...+..++.+|+|.|+.++++..++.+=....++.   
T Consensus       234 ~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G-~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~---  309 (412)
T PF01306_consen  234 AIYDVFDQQFPIYFASFFQSAGQGNQMYG-YLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA---  309 (412)
T ss_dssp             HHHHHHHHHHHHHHHHTSSSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT----
T ss_pred             HHHHHHHHHHHHHHHHHhcccccChhHHh-HHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh---
Confidence            33444444455555443    33444556 78889999999999999999999999999999999988887777764   


Q ss_pred             HhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHH-HHHHHHHHHHHHHhhhhHHhhcc-
Q 043907          236 QLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSIT-VAVNFVFTFLTAQTFLPMLCHFK-  313 (330)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~g-  313 (330)
                                ++.+.....-.+-+.-+..... ...-|+++.+|+|..++...+. +....++..+.+...|.+.|+.| 
T Consensus       310 ----------~~~~~i~~~klLH~~e~~l~lv-a~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~  378 (412)
T PF01306_consen  310 ----------TNPWVISLIKLLHALEFPLLLV-AAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGF  378 (412)
T ss_dssp             -----------SHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------cchHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCc
Confidence                      4444444444443333333322 2345668999999999999885 67788999999999999999999 


Q ss_pred             chhHHHHHHHHHHh
Q 043907          314 AGIFFFFGGLVLIM  327 (330)
Q Consensus       314 ~~~~~~~~~~~~~~  327 (330)
                      ..+|++.+.+.+..
T Consensus       379 ~~tylimg~iv~~~  392 (412)
T PF01306_consen  379 QHTYLIMGLIVLPF  392 (412)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            56888877765543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00788 fbt folate/biopterin transporter

Probab=99.60  E-value=4.1e-15  Score=125.93  Aligned_cols=290  Identities=11%  Similarity=0.013  Sum_probs=164.0

Q ss_pred             cchhhhhhhhc-----hhHHHHHHHHHHH-HHHHHHhhhhhHHHHH-HHHHHhhcccccccc------------------
Q 043907            2 LIASSVTRAIG-----RKVSILIGGVAFL-ADSAYGGSAFNIYMLI-FGRLLLGVGIGFGNQ------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~G-----rk~~l~~~~~~~~-~~~~~~~~~~~~~~~~-~~r~l~G~~~g~~~~------------------   56 (330)
                      +++|+++||++     ||+.++++.++.+ +.....+..++..... +.+++.+++.+...+                  
T Consensus        78 ~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~~~~~~~~  157 (468)
T TIGR00788        78 PFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIRESPSAGP  157 (468)
T ss_pred             HHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhcCCCcCC
Confidence            46899999998     7888888877763 4433344445544344 367777777666544                  


Q ss_pred             -----------------------ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccc
Q 043907           57 -----------------------IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISD  113 (330)
Q Consensus        57 -----------------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~  113 (330)
                                             +.+..+||..|++.+...++..+...++||++.....+.+ +++... ..       
T Consensus       158 ~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~-~~~~~~-~~-------  228 (468)
T TIGR00788       158 SLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIG-TYLEMN-MA-------  228 (468)
T ss_pred             CeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhccccccccccccc-ccchhh-hh-------
Confidence                                   3455689999888777666665556677886411001101 000000 00       


Q ss_pred             hhHHHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHH
Q 043907          114 VKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGG  193 (330)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  193 (330)
                       ... ....   +..++...+.++.++++..++.....++.+. ...+ .....+. ...+..|+++...+ ......++
T Consensus       229 -~~~-~~~~---~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~-~~~~-~~~~~f~-~~~~~lG~s~~~~G-~~~~~~~v  299 (468)
T TIGR00788       229 -LLT-LGVL---ANVKVQILGLRGAIQLLEIAKPLIFIFLSYA-NLPG-ASGSVFC-ATTQCLPGGPSFSG-MSKVVGNL  299 (468)
T ss_pred             -hhh-hhHH---HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHh-hcCC-CCceeEE-EEcccCCCCcchhh-hHHHHHHH
Confidence             000 0000   0000001112222333222221221222011 1111 1101111 11145799999999 88888999


Q ss_pred             HHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccc
Q 043907          194 MGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLV  273 (330)
Q Consensus       194 ~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (330)
                      +.+++..+.++..+|++.|+.+..+.++..++.......... .+.....  ...+.......+...+.+....|. ..+
T Consensus       300 ~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~-~~~~~gi--~~~~~~~~~~~l~~~~~g~~~~~~-~~~  375 (468)
T TIGR00788       300 GSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKR-WNLAFGI--SDEVFVLGDSIIAEVLAQLKFMPF-LVL  375 (468)
T ss_pred             HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeec-cccccCC--CCeeeeeehhHHHHHHHHHHHccH-HHH
Confidence            999999999999999999999988888777766443211100 0000000  111122222333344444555555 455


Q ss_pred             cccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907          274 PSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK  313 (330)
Q Consensus       274 ~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g  313 (330)
                      +.+..|++.+|+.+++.+...+++..+++.+++.+.+..|
T Consensus       376 ~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       376 LARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             HHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            6899999999999999999999999999999999998877

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.59  E-value=4.1e-14  Score=119.46  Aligned_cols=164  Identities=13%  Similarity=0.061  Sum_probs=122.3

Q ss_pred             hHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHH
Q 043907          146 QPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVS  225 (330)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~  225 (330)
                      .......+..+...........+.|.+.+++|++..+.+ ...+...++..++.++.|++.||+|||+.+..+..+.+++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~  101 (434)
T PRK11663         23 HILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIG-LLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGII  101 (434)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHH
Confidence            333444444444444445667788999999999999988 8889999999999999999999999999999998888888


Q ss_pred             HHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhh
Q 043907          226 QVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTF  305 (330)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~  305 (330)
                      .+.....             ++.+.......+.+.+.+.... ....++.|.+|+++|+++.++.+....++..+++.+.
T Consensus       102 ~~~~~~~-------------~~~~~l~~~~~l~g~~~g~~~~-~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~  167 (434)
T PRK11663        102 NILFGFS-------------SSLWAFALLWVLNAFFQGWGWP-VCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVV  167 (434)
T ss_pred             HHHHHHH-------------hHHHHHHHHHHHHHHHHHccch-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7766653             2333333333333333333333 4455668999999999999999999999999999999


Q ss_pred             hhHHhhccc-hhHHHHHHHH
Q 043907          306 LPMLCHFKA-GIFFFFGGLV  324 (330)
Q Consensus       306 ~~~~~~~g~-~~~~~~~~~~  324 (330)
                      +.+.+..|| +.|++.++++
T Consensus       168 ~~l~~~~gw~~~f~~~~i~~  187 (434)
T PRK11663        168 GAIALHYGWRYGMMIAGIIA  187 (434)
T ss_pred             HHHHHcccHHHHHHHHHHHH
Confidence            999988886 4555555443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.57  E-value=6.5e-13  Score=108.90  Aligned_cols=150  Identities=20%  Similarity=0.175  Sum_probs=106.7

Q ss_pred             HHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHH
Q 043907          151 ILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVII  229 (330)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~  229 (330)
                      .++..+....+.+.......++.+ ..|.++.... ..........+++.++..++.+|+|+|+++..+.++..++...+
T Consensus       241 ~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~-~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~  319 (467)
T COG2211         241 LLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAY-LLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLL  319 (467)
T ss_pred             HHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHH-HHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence            333444444555555555555554 3455555555 56666677777779999999999999999999999999888888


Q ss_pred             HHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccc-------hhhhhhhhhHHHHHHHHHHHHHH
Q 043907          230 GSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFP-------LEIRSAGQSITVAVNFVFTFLTA  302 (330)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~g~~~~~~~~~~~~~~  302 (330)
                      .+.           +.++....++..++...+.+.. .+++|++++|...       .+.-|...+....+.-++.+++.
T Consensus       320 ~f~-----------~~~~~~l~~~~~~i~~~g~~~~-~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~  387 (467)
T COG2211         320 YFT-----------PAGSVVLIVVALIIAGVGTGIA-NPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAG  387 (467)
T ss_pred             Hhh-----------cCcchHHHHHHHHHHHHHhhcc-ccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHH
Confidence            776           3345555555556655565543 4577888888753       33457778888999999999999


Q ss_pred             HhhhhHHhhcc
Q 043907          303 QTFLPMLCHFK  313 (330)
Q Consensus       303 ~~~~~~~~~~g  313 (330)
                      .+.++..+..|
T Consensus       388 ~~~g~~L~~~G  398 (467)
T COG2211         388 FIPGWILGAIG  398 (467)
T ss_pred             HHHHHHHHHcC
Confidence            99999888766

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.56  E-value=2.6e-14  Score=113.46  Aligned_cols=170  Identities=18%  Similarity=0.146  Sum_probs=141.0

Q ss_pred             cchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHH
Q 043907          143 YRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQM  222 (330)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~  222 (330)
                      .+.+.++...+........-..+..-.|.+.++.+++.++.+ .+.+...+...++-++.|.++||.+.|..+..+.++.
T Consensus        26 ~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG-~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLils  104 (448)
T COG2271          26 WRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLG-ILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILS  104 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHH
Confidence            444566666666665555555666677899999899999999 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHH
Q 043907          223 LVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTA  302 (330)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~  302 (330)
                      ++..+++++.             .+.....++..+.+.+.+.+++|....+ +.-+|+++||+..++.|.+.++|+.+.|
T Consensus       105 ai~nil~Gfs-------------~s~~~~~~l~~lng~fQg~Gwpp~~~~i-~~Wfsr~eRG~~~siWn~shNiGGal~~  170 (448)
T COG2271         105 AIVNILFGFS-------------PSLFLFAVLWVLNGWFQGMGWPPCARTI-THWFSRKERGTWWSIWNTSHNIGGALAP  170 (448)
T ss_pred             HHHHHHHhhh-------------hHHHHHHHHHHHHHHHhcCCCcHHHHHH-HHHcCccccCceEEEehhhhhcccchHH
Confidence            9999999885             4666677777777888888888876666 7999999999999999999999999999


Q ss_pred             Hhh--hhHHhhccc-hhHHHHHHHHHHh
Q 043907          303 QTF--LPMLCHFKA-GIFFFFGGLVLIM  327 (330)
Q Consensus       303 ~~~--~~~~~~~g~-~~~~~~~~~~~~~  327 (330)
                      .+.  +.+.++.+| ..|++-++++++.
T Consensus       171 ~~~~la~~~~~~~w~~~f~~pgiiaiiv  198 (448)
T COG2271         171 LVALLAFFAFHGGWRAAFYFPGIIAIIV  198 (448)
T ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence            999  888887775 5666655555443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.55  E-value=1.8e-13  Score=114.62  Aligned_cols=166  Identities=14%  Similarity=-0.012  Sum_probs=124.9

Q ss_pred             hhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHH
Q 043907          145 PQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLV  224 (330)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~  224 (330)
                      ++......+.+..............|.+.+++|++..+.+ +..+...++..++.++.|++.||+|||+.+..+.++..+
T Consensus         7 ~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~   85 (412)
T TIGR02332         7 RRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFG-LAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGI   85 (412)
T ss_pred             hHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHH-HHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHH
Confidence            4455555555555556666667777877889999999999 999999999999999999999999999999999888888


Q ss_pred             HHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHh
Q 043907          225 SQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQT  304 (330)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~  304 (330)
                      +.+...+.             ++.+.......+.+.+.+.. .|....++.|.+|+++|+++.++.+....++..+++.+
T Consensus        86 ~~~~~~~~-------------~~~~~l~~~r~l~G~~~~~~-~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~  151 (412)
T TIGR02332        86 ASTATMFA-------------TGPESLYLLRILVGIAEAGF-LPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLIL  151 (412)
T ss_pred             HHHHHHHh-------------cCHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88777654             33344444444444444433 34545667899999999999999999999999999999


Q ss_pred             hhhHHh------hccc-hhHHHHHHHHH
Q 043907          305 FLPMLC------HFKA-GIFFFFGGLVL  325 (330)
Q Consensus       305 ~~~~~~------~~g~-~~~~~~~~~~~  325 (330)
                      .+.+.+      ..|| +.|++.++..+
T Consensus       152 ~~~l~~~~~~~~~~gwr~~f~~~~~~~l  179 (412)
T TIGR02332       152 SGYILALDGLMALKGWQWLFLLEGFPSV  179 (412)
T ss_pred             HHHHHhCCCCCCccchhHHHHHHHHHHH
Confidence            988764      2465 55655554443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK09848 glucuronide transporter; Provisional

Probab=99.55  E-value=4.3e-13  Score=113.86  Aligned_cols=141  Identities=15%  Similarity=0.043  Sum_probs=92.3

Q ss_pred             hhhHhHHHhHHHHHHh-cCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhC
Q 043907          160 TGINIVGLYSPVLFRT-LKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLG  238 (330)
Q Consensus       160 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (330)
                      .+........|.+.++ .|.++.... .......+..+++.++.+++.||+|+|+.+..+..+..++.+.+.+.      
T Consensus       242 ~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~------  314 (448)
T PRK09848        242 ISTFAVSASSLFYVRYVLNDTGLFTV-LVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV------  314 (448)
T ss_pred             HHHHHHhhhheeeEeeecCChHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc------
Confidence            3344444556666553 465544444 44444456778899999999999999999998888777776555432      


Q ss_pred             CCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchh-------hhhhhhhHHHHHHHHHHHHHHHhhhhHHhh
Q 043907          239 DHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLE-------IRSAGQSITVAVNFVFTFLTAQTFLPMLCH  311 (330)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~-------~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~  311 (330)
                           ++.+.+.......+.+.+.+... +...++.+|..|.+       .+|...|+.+....++..+++.+.+.+.+.
T Consensus       315 -----~~~~~~~~~~~~~l~g~G~~~~~-~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~  388 (448)
T PRK09848        315 -----SVWSLPVALVALAIASIGQGVTM-TVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGL  388 (448)
T ss_pred             -----CchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 12233333333344444444333 34455656776643       458899999999999999999999988766


Q ss_pred             cc
Q 043907          312 FK  313 (330)
Q Consensus       312 ~g  313 (330)
                      .|
T Consensus       389 ~G  390 (448)
T PRK09848        389 SG  390 (448)
T ss_pred             cC
Confidence            54

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.55  E-value=2e-13  Score=113.67  Aligned_cols=148  Identities=8%  Similarity=-0.005  Sum_probs=116.7

Q ss_pred             hHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCC
Q 043907          164 IVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGC  243 (330)
Q Consensus       164 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (330)
                      ......|.+.+++|.++.+.+ ...+...+...++.++.|++.||+|||+.+..+..+.+++.+.....           
T Consensus        38 ~~~~~l~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~-----------  105 (394)
T PRK10213         38 LPVSLLTPMAQDLGISEGVAG-QSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA-----------  105 (394)
T ss_pred             HHHhhHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH-----------
Confidence            444457788899999999998 88888999999999999999999999999999999988877766553           


Q ss_pred             CcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHHH
Q 043907          244 SEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFGG  322 (330)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~  322 (330)
                        ++.+...+...+.+.+.+. ..+....++.|.+|+++|+++.++......++..++|.+.+.+.+..+| +.|++.+.
T Consensus       106 --~~~~~l~~~r~l~G~~~g~-~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~  182 (394)
T PRK10213        106 --NSFSLLLIGRACLGLALGG-FWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAV  182 (394)
T ss_pred             --ChHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence              3444455555555545443 3345566678999999999999999999999999999999999998886 56665555


Q ss_pred             HHHH
Q 043907          323 LVLI  326 (330)
Q Consensus       323 ~~~~  326 (330)
                      ++++
T Consensus       183 l~~~  186 (394)
T PRK10213        183 MGVL  186 (394)
T ss_pred             HHHH
Confidence            4443

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.54  E-value=1.7e-13  Score=120.50  Aligned_cols=134  Identities=19%  Similarity=0.061  Sum_probs=105.5

Q ss_pred             HhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043907          163 NIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGG  242 (330)
Q Consensus       163 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (330)
                      ..+....|.+.+++|.+..+.+ ++.+...++.+++.++.|+++||+|||+.++.+.++.+++.++..+.          
T Consensus       184 ~~is~ilp~i~~~~gls~~~~g-~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa----------  252 (742)
T TIGR01299       184 FVVGFVLPSAEKDLCIPDSGKG-MLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFV----------  252 (742)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH----------
Confidence            4455667888888999988888 88899999999999999999999999999999888888777666553          


Q ss_pred             CCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhh
Q 043907          243 CSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCH  311 (330)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~  311 (330)
                         ++.+..+++.++.+.+.+.. .+....++.|.+|++.|++..++.+....+|..+++.+...+...
T Consensus       253 ---~s~~~llv~R~l~G~g~g~~-~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~  317 (742)
T TIGR01299       253 ---QGYGFFLFCRLLSGFGIGGA-IPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPH  317 (742)
T ss_pred             ---hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence               33444444555555554433 356677889999999999999999999999999888877665543

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00895 2A0115 benzoate transport

Probab=99.54  E-value=2.3e-13  Score=113.93  Aligned_cols=159  Identities=14%  Similarity=0.058  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHH
Q 043907          147 PVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQ  226 (330)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~  226 (330)
                      ......+..+...........+.|.+.++.|.++.+.+ +..+...++..++.++.|+++||+|||+.+..+..+..++.
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~   96 (398)
T TIGR00895        18 AIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLG-FLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFT   96 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHH-HHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            33334444444444455666778888899999998888 88889999999999999999999999999998888777776


Q ss_pred             HHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhh
Q 043907          227 VIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFL  306 (330)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~  306 (330)
                      +.....             .+.+.......+.+.+.+.. .+....++.|.+|+++|+++.++.+....++..+++.+.+
T Consensus        97 ~~~~~~-------------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  162 (398)
T TIGR00895        97 LLCALA-------------TNVTQLLILRFLAGLGLGGL-MPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAG  162 (398)
T ss_pred             HHHHHc-------------cchHHHHHHHHHHhcccccc-hhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHH
Confidence            665543             23333444444444444433 3455667789999999999999999999999999999999


Q ss_pred             hHHhhccc-hhHHHH
Q 043907          307 PMLCHFKA-GIFFFF  320 (330)
Q Consensus       307 ~~~~~~g~-~~~~~~  320 (330)
                      .+.+..+| ..+++.
T Consensus       163 ~l~~~~g~~~~~~~~  177 (398)
T TIGR00895       163 WLIPVFGWRSLFYVG  177 (398)
T ss_pred             HHhhcccceeehhhh
Confidence            99888885 344444

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.53  E-value=2.7e-13  Score=108.81  Aligned_cols=166  Identities=15%  Similarity=0.074  Sum_probs=139.1

Q ss_pred             HHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHH
Q 043907          148 VMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQV  227 (330)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~  227 (330)
                      +....+..+...+.-......+|++.+++|.+..+++ ...+.+..+..++.++...+.||+.||++++..+.++.++.+
T Consensus        15 l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG-~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~   93 (394)
T COG2814          15 LLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAG-QLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNL   93 (394)
T ss_pred             HHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHH
Confidence            3344455555555556777888999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhh
Q 043907          228 IIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLP  307 (330)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~  307 (330)
                      +..+.             ++.+..++.-...+...+..++ +...+..|+.|+++|+++.++......+...++.+++.+
T Consensus        94 l~alA-------------p~f~~Ll~aR~~~g~a~G~f~~-i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~  159 (394)
T COG2814          94 LSALA-------------PSFAVLLLARALAGLAHGVFWS-IAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTF  159 (394)
T ss_pred             HHHHh-------------ccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHH
Confidence            98876             5566666666666666654444 656777899999999999999999999999999999999


Q ss_pred             HHhhccc-hhHHHHHHHHHHhh
Q 043907          308 MLCHFKA-GIFFFFGGLVLIMT  328 (330)
Q Consensus       308 ~~~~~g~-~~~~~~~~~~~~~~  328 (330)
                      +-|.+|| .+|+..+++.++..
T Consensus       160 ig~~~GWR~~F~~ia~l~ll~~  181 (394)
T COG2814         160 LGQLFGWRATFLAIAVLALLAL  181 (394)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHH
Confidence            9999997 68888887776654

>PRK03545 putative arabinose transporter; Provisional

Probab=99.53  E-value=2.4e-13  Score=113.42  Aligned_cols=149  Identities=11%  Similarity=0.029  Sum_probs=115.5

Q ss_pred             hHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCC
Q 043907          164 IVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGC  243 (330)
Q Consensus       164 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (330)
                      ......|.+.+++|.++.+.+ +..+...+...++.++.|++.||+|||+.+..+..+..++.+.....           
T Consensus        27 ~~~~~~~~l~~~~~~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----------   94 (390)
T PRK03545         27 VPVGLLSDIAQSFHMQTAQVG-LMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA-----------   94 (390)
T ss_pred             HHHcchHHHHhHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh-----------
Confidence            344457888899999999999 88889999999999999999999999999999988888887776654           


Q ss_pred             CcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHHH
Q 043907          244 SEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFGG  322 (330)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~  322 (330)
                        ++.+...+.....+.+.+ ...+....++.|.+|+++|+++.|+......++..++|.+.+.+.+..|| +.|++.++
T Consensus        95 --~~~~~l~~~r~~~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~  171 (390)
T PRK03545         95 --WNFTVLLISRIGIAFAHA-IFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGG  171 (390)
T ss_pred             --ccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHH
Confidence              334444444443333332 22344456668999999999999999999999999999999999888885 56676666


Q ss_pred             HHHHh
Q 043907          323 LVLIM  327 (330)
Q Consensus       323 ~~~~~  327 (330)
                      ++++.
T Consensus       172 ~~~l~  176 (390)
T PRK03545        172 GALIT  176 (390)
T ss_pred             HHHHH
Confidence            55443

>PRK10054 putative transporter; Provisional

Probab=99.53  E-value=3.9e-13  Score=111.97  Aligned_cols=161  Identities=14%  Similarity=0.096  Sum_probs=116.1

Q ss_pred             HHHHHHHHHhhhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHH
Q 043907          150 AILIPFFQQVTGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVI  228 (330)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~  228 (330)
                      ......+....+......+.|.++ ++.|++..+.+ +..+...+...+++++.|+++||+|||+.+..+.....++.+.
T Consensus        11 ~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g-~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~   89 (395)
T PRK10054         11 ALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIG-YAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIA   89 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHH
Confidence            333444444566666677777776 56899999999 8888889999999999999999999999998888877777666


Q ss_pred             HHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhH
Q 043907          229 IGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPM  308 (330)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~  308 (330)
                      +.+.             ++.+....+....+.+.+ ...+....+..|..|+++|+++.|+.+...+++..++|.+.+.+
T Consensus        90 ~~~~-------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l  155 (395)
T PRK10054         90 IPLV-------------NNVTLVVLFFALINCAYS-VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLL  155 (395)
T ss_pred             HHHH-------------hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5543             223333333333332222 23344556668999999999999999999999999999999988


Q ss_pred             Hhhccc-hhHHHHHHHHHH
Q 043907          309 LCHFKA-GIFFFFGGLVLI  326 (330)
Q Consensus       309 ~~~~g~-~~~~~~~~~~~~  326 (330)
                      .+ .+| ..|++.++++++
T Consensus       156 ~~-~g~~~~f~~~~~~~~i  173 (395)
T PRK10054        156 VM-QSINLPFWLAAICSAF  173 (395)
T ss_pred             HH-hccCcHHHHHHHHHHH
Confidence            75 564 566655544443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.53  E-value=3.4e-13  Score=112.44  Aligned_cols=153  Identities=18%  Similarity=0.098  Sum_probs=117.2

Q ss_pred             HhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHh
Q 043907          158 QVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQL  237 (330)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~  237 (330)
                      ...+........|.+.+++|.++.+.+ +..+...++..++.++.|++.||+|||+.+..+..+..++.+.....     
T Consensus        17 ~~~~~~~~~~~~p~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-----   90 (385)
T TIGR00710        17 GPLGIDMYLPAFPEIAADLSTPASIVQ-MTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS-----   90 (385)
T ss_pred             HHHHHHHhcccHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-----
Confidence            334445555667888899999999999 89999999999999999999999999999999888888777766553     


Q ss_pred             CCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hh
Q 043907          238 GDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GI  316 (330)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~  316 (330)
                              ++.+...+...+.+.+.+.. .+....++.|.+|+++|+++.++.+....++..+++.+.+.+.+..+| ..
T Consensus        91 --------~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~  161 (385)
T TIGR00710        91 --------NNIETLLVLRFVQAFGASAG-SVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAI  161 (385)
T ss_pred             --------ccHHHHHHHHHHHHcchhHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence                    33344444444444444333 334456678999999999999999999999999999999999888885 45


Q ss_pred             HHHHHHHHH
Q 043907          317 FFFFGGLVL  325 (330)
Q Consensus       317 ~~~~~~~~~  325 (330)
                      +++.+++.+
T Consensus       162 ~~~~~~~~~  170 (385)
T TIGR00710       162 FAFLSLAGI  170 (385)
T ss_pred             HHHHHHHHH
Confidence            555554443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.53  E-value=3.2e-13  Score=115.87  Aligned_cols=166  Identities=16%  Similarity=0.114  Sum_probs=126.8

Q ss_pred             hHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHH
Q 043907          146 QPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVS  225 (330)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~  225 (330)
                      ..+...++..+...........-.|.+.+++|.+.++.+ +..+.+.++...+.++.|+++||+|||+.+..+..+..++
T Consensus         6 ~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~-~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~   84 (495)
T PRK14995          6 LTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELL-WIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLA   84 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            345556666666666677788889999999999998888 8999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccc-cchhhhhhhhhHHHHHHHHHHHHHHHh
Q 043907          226 QVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEI-FPLEIRSAGQSITVAVNFVFTFLTAQT  304 (330)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~p~~~r~~~~g~~~~~~~~~~~~~~~~  304 (330)
                      .+.....             ++.+..++...+.+.+.+. ..+.....+.+. .|+++|+++.|+......++..++|.+
T Consensus        85 ~~~~~~a-------------~~~~~li~~r~l~G~g~~~-~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~l  150 (495)
T PRK14995         85 SLAAAFS-------------PTASWLIATRALLAIGAAM-IVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLV  150 (495)
T ss_pred             HHHHHHc-------------CCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8877664             4444445544444444433 233333333454 478999999999999999999999999


Q ss_pred             hhhHHhhccc-hhHHHHHHHHHH
Q 043907          305 FLPMLCHFKA-GIFFFFGGLVLI  326 (330)
Q Consensus       305 ~~~~~~~~g~-~~~~~~~~~~~~  326 (330)
                      .+.+.++.+| +.|++...++++
T Consensus       151 gg~l~~~~gwr~~f~i~~~~~~~  173 (495)
T PRK14995        151 GGILLEHFYWGSVFLINVPIVLV  173 (495)
T ss_pred             HHHhhccCChHHHHHHHHHHHHH
Confidence            9999999886 566665544443

>PRK10504 putative transporter; Provisional

Probab=99.52  E-value=4.2e-13  Score=114.82  Aligned_cols=162  Identities=18%  Similarity=0.090  Sum_probs=121.2

Q ss_pred             HHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHH
Q 043907          148 VMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQV  227 (330)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~  227 (330)
                      ++...+..+...........+.|.+.++.|.++.+.+ +..+...++..++.++.|+++||+|||+.+..+..+..++.+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~   90 (471)
T PRK10504         12 LWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMH-MVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSL   90 (471)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence            3344445555555566777889999999999999888 788888889999999999999999999999888777777666


Q ss_pred             HHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhh
Q 043907          228 IIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLP  307 (330)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~  307 (330)
                      .....             ++.+.......+.+.+.+. ..+....++.|.+|+++|+++.|+.+....++..++|.+.+.
T Consensus        91 ~~~~~-------------~~~~~l~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~  156 (471)
T PRK10504         91 FCALS-------------GTLNELLLARVLQGVGGAM-MVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGL  156 (471)
T ss_pred             HHHHh-------------CCHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            54432             3333344444444444443 234556666899999999999999999999999999999999


Q ss_pred             HHhhccc-hhHHHHHHHH
Q 043907          308 MLCHFKA-GIFFFFGGLV  324 (330)
Q Consensus       308 ~~~~~g~-~~~~~~~~~~  324 (330)
                      +.+..+| +.|.+...++
T Consensus       157 l~~~~gw~~~f~~~~~~~  174 (471)
T PRK10504        157 LVEYASWHWIFLINIPVG  174 (471)
T ss_pred             HHhhccHHHHHHHHHHHH
Confidence            9998885 5565544433

>PRK03699 putative transporter; Provisional

Probab=99.52  E-value=5.7e-13  Score=111.20  Aligned_cols=167  Identities=8%  Similarity=-0.001  Sum_probs=120.4

Q ss_pred             chhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHH
Q 043907          144 RPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQML  223 (330)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~  223 (330)
                      +++..+...+..+.............|.+.+++|+++.+.+ ...+...++..++.++.|++.||+|||+.+..+..+..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g-~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~   83 (394)
T PRK03699          5 RIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMS-NTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMI   83 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            34455555555555444456667778888899999999988 88888999999999999999999999999988888777


Q ss_pred             HHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHH
Q 043907          224 VSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQ  303 (330)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~  303 (330)
                      ++.+.....             ++.+.......+.+.+.+.... ....++.|.+|+++|+.+.+..+....+++.++|.
T Consensus        84 i~~~l~~~~-------------~~~~~~~~~~~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~  149 (394)
T PRK03699         84 LAVAGLMFS-------------HSLALFSIAMFVLGVVSGITMS-IGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPI  149 (394)
T ss_pred             HHHHHHHHc-------------chHHHHHHHHHHHHHhhHhhcc-chhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence            777666543             2333344444444444443333 34556689999999999999988888888999999


Q ss_pred             hhhhHHhh-ccc-hhHHHHHHHHH
Q 043907          304 TFLPMLCH-FKA-GIFFFFGGLVL  325 (330)
Q Consensus       304 ~~~~~~~~-~g~-~~~~~~~~~~~  325 (330)
                      +.+.+.+. .+| +.|.+.+++.+
T Consensus       150 ~~~~l~~~~~gw~~~f~~~~~~~~  173 (394)
T PRK03699        150 IAAYLLARSIEWYWVYACIGLVYV  173 (394)
T ss_pred             HHHHHHhccccHHHHHHHHHHHHH
Confidence            98887653 565 45555555443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.52  E-value=7.2e-13  Score=111.24  Aligned_cols=155  Identities=11%  Similarity=0.062  Sum_probs=120.3

Q ss_pred             chhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHH
Q 043907          144 RPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQML  223 (330)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~  223 (330)
                      .++.+....+..+.............|.+.+++|.++.+.+ +..+...++..++.++.|+++||+|||+.+..+..+..
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g-~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~   88 (405)
T TIGR00891        10 QWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAA-SLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFS   88 (405)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHH-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            33445555566666666667777778888899999999999 89999999999999999999999999999999888888


Q ss_pred             HHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHH
Q 043907          224 VSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQ  303 (330)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~  303 (330)
                      ++.+.....             ++.+.......+.+.+.+... +....++.|.+|+++|+++.++.+....++..+++.
T Consensus        89 ~~~~~~~~~-------------~~~~~l~~~~~l~G~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  154 (405)
T TIGR00891        89 AGTLACGFA-------------PGYITMFIARLVIGIGMGGEY-GSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQ  154 (405)
T ss_pred             HHHHHHHHh-------------ccHHHHHHHHHHHHhhhhhhh-HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHH
Confidence            777766553             333444444444444444333 344566689999999999999999999999999999


Q ss_pred             hhhhHHhhcc
Q 043907          304 TFLPMLCHFK  313 (330)
Q Consensus       304 ~~~~~~~~~g  313 (330)
                      +.+.+.+..+
T Consensus       155 l~~~l~~~~~  164 (405)
T TIGR00891       155 VYSLVVPVWG  164 (405)
T ss_pred             HHHHHHHhcC
Confidence            9998887765

>PRK11462 putative transporter; Provisional

Probab=99.51  E-value=4.2e-12  Score=107.65  Aligned_cols=116  Identities=10%  Similarity=-0.030  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccc
Q 043907          186 LSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYS  265 (330)
Q Consensus       186 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (330)
                      .......+..+++.+++++++||+++|+....+.....+..+.+.+.           +...........++.+.+.+ .
T Consensus       267 ~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~l~g~~~~-~  334 (460)
T PRK11462        267 AFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFV-----------PMQASITMFVFIFVIGVLHQ-L  334 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh-----------chhHHHHHHHHHHHHHHHHH-H
Confidence            45667778889999999999999999988765544433333332221           11222222222233332322 2


Q ss_pred             cccccccccccccc-------hhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907          266 WGPLAWLVPSEIFP-------LEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK  313 (330)
Q Consensus       266 ~~~~~~~~~~e~~p-------~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g  313 (330)
                      ..+..+.+.+|..+       .+..|...+.......++..+++.+.+.+.+..|
T Consensus       335 ~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~G  389 (460)
T PRK11462        335 VTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGG  389 (460)
T ss_pred             HHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            23344555566544       2223444566668899999999999888876544

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.51  E-value=6.3e-13  Score=112.31  Aligned_cols=157  Identities=15%  Similarity=0.097  Sum_probs=119.3

Q ss_pred             HHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHH
Q 043907          148 VMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQV  227 (330)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~  227 (330)
                      .....+..+.............|.+.++.|.++.+.+ ...+...++..++.++.|+++||+|||+.+..+.....++.+
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~-~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~   98 (426)
T PRK12307         20 LFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGA-FLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTG   98 (426)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence            3444444544445555666677888889999999988 889999999999999999999999999999999998888887


Q ss_pred             HHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhh
Q 043907          228 IIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLP  307 (330)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~  307 (330)
                      ...+.             ++.+...+...+.+.+.+.. .+....++.|.+|+++|+++.++......++..+++.+.+.
T Consensus        99 ~~~~~-------------~~~~~l~~~r~l~G~g~g~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~  164 (426)
T PRK12307         99 LSGLA-------------SGVIMLTLSRFIVGMGMAGE-YACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPS  164 (426)
T ss_pred             HHHHH-------------hHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHH
Confidence            76654             33444444444444444322 33445566899999999999999999999999999999988


Q ss_pred             HHhhccch-hHHH
Q 043907          308 MLCHFKAG-IFFF  319 (330)
Q Consensus       308 ~~~~~g~~-~~~~  319 (330)
                      +.+..+|. .+++
T Consensus       165 l~~~~~w~~~f~i  177 (426)
T PRK12307        165 FAEAYGWRAAFFV  177 (426)
T ss_pred             HcccCCHHHHHHH
Confidence            88887863 4443

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.50  E-value=1.2e-12  Score=109.83  Aligned_cols=153  Identities=15%  Similarity=0.136  Sum_probs=110.9

Q ss_pred             HHHHhhhhHhHHHhHHHHHH-hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhhHhhHHHHHHHHHHHHH
Q 043907          155 FFQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSAVVAGGMGTVLAIISMILADKF-GRKVLFLVGGMQMLVSQVIIGSI  232 (330)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~  232 (330)
                      .......++.+..++|.+++ +.|+++.+++ ...........++.+++|+++||+ |||+.+..+.++..++.+.+...
T Consensus        18 ~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~-~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~   96 (493)
T PRK15462         18 QIWEYFSFYGMRALLILYLTNQLKYDDNHAY-ELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGAS   96 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh
Confidence            33344566777788888875 5799999988 888888888899999999999999 99999999998888887655431


Q ss_pred             HHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchh--hhhhhhhHHHHHHHHHHHHHHHhhhhHHh
Q 043907          233 MAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLE--IRSAGQSITVAVNFVFTFLTAQTFLPMLC  310 (330)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~~~g~~~~~~~~~~~~~~~~~~~~~~  310 (330)
                                  +...............+.+.. .+....+++|.+|++  .|.++.++.++..++|+.++|.+.+.+.+
T Consensus        97 ------------~~~~~~~~l~l~li~iG~G~~-~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~  163 (493)
T PRK15462         97 ------------EIHPSFLYLSLAIIVCGYGLF-KSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQE  163 (493)
T ss_pred             ------------hcchhHHHHHHHHHHHhcccc-cccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHh
Confidence                        111111122222222232222 233456678999875  69999999999999999999999999998


Q ss_pred             hccc-hhHHHHH
Q 043907          311 HFKA-GIFFFFG  321 (330)
Q Consensus       311 ~~g~-~~~~~~~  321 (330)
                      ..|| ..|.+.+
T Consensus       164 ~~Gw~~~F~iaa  175 (493)
T PRK15462        164 EYSWAMGFGLAA  175 (493)
T ss_pred             hhChHHHHHHHH
Confidence            8885 4555443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.49  E-value=8.5e-13  Score=113.76  Aligned_cols=156  Identities=10%  Similarity=0.054  Sum_probs=118.4

Q ss_pred             hHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHH
Q 043907          146 QPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVS  225 (330)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~  225 (330)
                      +.+....+..+.............|.+.+++|.++.+.+ ...+...++..++.++.|++.||+|||+.+..+.....++
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   98 (496)
T PRK03893         20 KAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAA-SLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVG   98 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            344445555555555556666777888889999999888 8888899999999999999999999999999888888887


Q ss_pred             HHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhh
Q 043907          226 QVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTF  305 (330)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~  305 (330)
                      .+...+.             .+.+...+...+.+.+.+ +..+....++.|.+|+++|+++.++.+....++..+++.+.
T Consensus        99 ~~~~~~~-------------~~~~~l~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  164 (496)
T PRK03893         99 TLACGFA-------------PGYWTLFIARLVIGMGMA-GEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVY  164 (496)
T ss_pred             HHHHHHH-------------hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7776653             333334444444443333 22334455668999999999999999999999999999999


Q ss_pred             hhHHhhccchh
Q 043907          306 LPMLCHFKAGI  316 (330)
Q Consensus       306 ~~~~~~~g~~~  316 (330)
                      +.+.+..+|..
T Consensus       165 ~~l~~~~~w~~  175 (496)
T PRK03893        165 SLVVPVWGWRA  175 (496)
T ss_pred             HHHhccCCHHH
Confidence            99988888643

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.49  E-value=1e-12  Score=109.71  Aligned_cols=166  Identities=13%  Similarity=0.142  Sum_probs=122.9

Q ss_pred             hHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHH
Q 043907          146 QPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVS  225 (330)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~  225 (330)
                      |.+.+..........+.+......|.+.++.|.++.+.+ +..+...++..++.++.|+++||+|||+.+..+.....++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~   81 (392)
T PRK10473          3 RFLLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLH-IAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIA   81 (392)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHH
Confidence            344455555555556667777788999999999998888 8888999999999999999999999999999888888777


Q ss_pred             HHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhh
Q 043907          226 QVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTF  305 (330)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~  305 (330)
                      .......             ++.+.......+.+.+.+.. .+....++.|.+|+++|+++.++.+....++..++|.+.
T Consensus        82 ~~~~~~~-------------~~~~~~~~~~~l~g~~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~  147 (392)
T PRK10473         82 SLLCSLA-------------ETSSLFLAGRFLQGIGAGCC-YVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLG  147 (392)
T ss_pred             HHHHHHh-------------CcHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7666543             22333333333333333322 234456678999999999999999999999999999998


Q ss_pred             hhHHhhccc-hhHHHHHHHHHH
Q 043907          306 LPMLCHFKA-GIFFFFGGLVLI  326 (330)
Q Consensus       306 ~~~~~~~g~-~~~~~~~~~~~~  326 (330)
                      +.+.+..+| ..+++.+++.++
T Consensus       148 ~~l~~~~g~~~~~~~~~~~~~i  169 (392)
T PRK10473        148 HLIMLKFPWQSLFYTMAAMGIL  169 (392)
T ss_pred             HHHHhCcChHHHHHHHHHHHHH
Confidence            888777775 456665554443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.49  E-value=4.9e-13  Score=114.97  Aligned_cols=162  Identities=17%  Similarity=0.170  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHH
Q 043907          148 VMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQV  227 (330)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~  227 (330)
                      +..+.+..+.............|.+.+++|.+..+.+ +..+...++..++.++.|++.||+|||+.+..+..+..++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   82 (485)
T TIGR00711         4 TIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQ-WVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSL   82 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhh-HHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            3344455555555666777788999999999999888 899999999999999999999999999999999888888777


Q ss_pred             HHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhh
Q 043907          228 IIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLP  307 (330)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~  307 (330)
                      .....             ++.+.......+.+.+.+ ...+....++.|.+|+++|+++.++......++..++|.+.+.
T Consensus        83 ~~~~~-------------~~~~~l~~~~~~~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  148 (485)
T TIGR00711        83 LCGVA-------------PNLELMIIFRVIQGFGGG-PLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGW  148 (485)
T ss_pred             HHhCc-------------CCHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhH
Confidence            66543             333444444444444433 3344556777899999999999999999999999999999999


Q ss_pred             HHhhccc-hhHHHHHHHH
Q 043907          308 MLCHFKA-GIFFFFGGLV  324 (330)
Q Consensus       308 ~~~~~g~-~~~~~~~~~~  324 (330)
                      +.++.+| +.|++.+.++
T Consensus       149 l~~~~~w~~~f~~~~~~~  166 (485)
T TIGR00711       149 IIENYHWRWIFLINVPIG  166 (485)
T ss_pred             hccCcCceehhhhhhHHH
Confidence            9988885 5555544333

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.48  E-value=6.4e-13  Score=113.32  Aligned_cols=158  Identities=13%  Similarity=0.035  Sum_probs=108.4

Q ss_pred             HHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHH
Q 043907          153 IPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSI  232 (330)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~  232 (330)
                      ..++.............|.+.+++|++..+.+ ...+...++..++.++.|+++||+|||+.+..+.+..+++.+.....
T Consensus        43 ~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~  121 (476)
T PLN00028         43 ISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIG-NAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV  121 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh
Confidence            33444444445556667888899999999888 77888888999999999999999999999988887777776665553


Q ss_pred             HHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHh--
Q 043907          233 MAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLC--  310 (330)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~--  310 (330)
                                   .+.+...+...+.+.+.+ ...+ ...+++|.+|+++|+++.|+.+....+++.+++.+.+.+.+  
T Consensus       122 -------------~s~~~l~~~r~l~G~~~~-~~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~  186 (476)
T PLN00028        122 -------------SSATGFIAVRFFIGFSLA-TFVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLI  186 (476)
T ss_pred             -------------cCHHHHHHHHHHHHHHHH-hhHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         222333333333333322 2222 23456899999999999999988888888877776655432  


Q ss_pred             --h-----ccc-hhHHHHHHHHHH
Q 043907          311 --H-----FKA-GIFFFFGGLVLI  326 (330)
Q Consensus       311 --~-----~g~-~~~~~~~~~~~~  326 (330)
                        .     .|| +.|++.++++++
T Consensus       187 ~~~~~~~~~gWr~~f~i~g~l~l~  210 (476)
T PLN00028        187 KDAGAPSFTAWRIAFFVPGLLHII  210 (476)
T ss_pred             HhcCCcchhhhHHHHHHHHHHHHH
Confidence              1     355 566666655544

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.47  E-value=1.5e-12  Score=109.29  Aligned_cols=158  Identities=15%  Similarity=0.009  Sum_probs=116.7

Q ss_pred             HHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHH
Q 043907          151 ILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIG  230 (330)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~  230 (330)
                      .....+.............|.+.+++|.++.+.+ +..+...++..++.++.|+++||+|||+.+..+..+..++.+...
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~   98 (406)
T PRK11551         20 CFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMG-WAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATA   98 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence            3333334444445566677888899999999999 899999999999999999999999999999998877777665554


Q ss_pred             HHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHh
Q 043907          231 SIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLC  310 (330)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~  310 (330)
                      ..             .+.+...+...+.+.+.+.. .+....++.|.+|+++|+++.++.+....++..+++.+.+.+.+
T Consensus        99 ~~-------------~~~~~~~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~  164 (406)
T PRK11551         99 QA-------------WDFPSLLVARLLTGVGLGGA-LPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAG  164 (406)
T ss_pred             Hh-------------ccHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            43             33344444444444444433 23445667899999999999999999999999999988887777


Q ss_pred             hccc-hhHHHHHHH
Q 043907          311 HFKA-GIFFFFGGL  323 (330)
Q Consensus       311 ~~g~-~~~~~~~~~  323 (330)
                      ..+| ..+++.+++
T Consensus       165 ~~~~~~~~~~~~~~  178 (406)
T PRK11551        165 DAAWRHIFYVGGVG  178 (406)
T ss_pred             ccCHHHHHHHHHHH
Confidence            7775 455554433

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.47  E-value=1.2e-12  Score=109.78  Aligned_cols=150  Identities=13%  Similarity=0.123  Sum_probs=113.0

Q ss_pred             hHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCC
Q 043907          162 INIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHG  241 (330)
Q Consensus       162 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (330)
                      ......-+|.+.++++.+..+.. ...+...++..++.++.|+++||+|||+++..+..+..++.+.....         
T Consensus        32 ~~~~~p~l~~i~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a---------  101 (413)
T PRK15403         32 TDLIQPGIINVVRDFNADVSLAP-ASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT---------  101 (413)
T ss_pred             HHhhccCHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc---------
Confidence            34444455677788999999888 88899999999999999999999999999999888887777666553         


Q ss_pred             CCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHH
Q 043907          242 GCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFF  320 (330)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~  320 (330)
                          ++.+..++...+.+.+.+ ...+....++.|.+|+++|+++.++.+....++..++|.+.+.+.+..|| +.|++.
T Consensus       102 ----~~~~~l~~~r~l~Gi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~  176 (413)
T PRK15403        102 ----TSMTQFLIARFIQGTSIC-FIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAII  176 (413)
T ss_pred             ----CCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence                333344444444443333 22334456668999999999999999999999999999999998888786 566665


Q ss_pred             HHHHHH
Q 043907          321 GGLVLI  326 (330)
Q Consensus       321 ~~~~~~  326 (330)
                      +++.++
T Consensus       177 ~~~~~i  182 (413)
T PRK15403        177 AVMGLI  182 (413)
T ss_pred             HHHHHH
Confidence            555443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.45  E-value=2.1e-12  Score=107.35  Aligned_cols=161  Identities=10%  Similarity=-0.062  Sum_probs=121.0

Q ss_pred             HHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHH
Q 043907          151 ILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIG  230 (330)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~  230 (330)
                      .....+.............|.+.+++|.+..+.+ +..+...++..++.++.|++.||+|||+.+..+..+.+++.+...
T Consensus         8 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~   86 (382)
T PRK10091          8 LALGTFGLGMAEFGIMGVLTELAHDVGISIPAAG-HMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFT   86 (382)
T ss_pred             HHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHh-HHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHH
Confidence            3333343444445666778888899999999988 899999999999999999999999999999999988888877766


Q ss_pred             HHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHh
Q 043907          231 SIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLC  310 (330)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~  310 (330)
                      ..             ++.+...+...+.+.+.+... +.....+.|.+|+++|+++.+.......++..+++.+.+.+.+
T Consensus        87 ~~-------------~~~~~l~~~r~l~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~  152 (382)
T PRK10091         87 LS-------------SSYLMLAIGRLVSGFPHGAFF-GVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQ  152 (382)
T ss_pred             Hh-------------CcHHHHHHHHHHHHhhhHHHH-HHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhh
Confidence            54             334444444444444433322 3334556789999999999999998889999999999999888


Q ss_pred             hccc-hhHHHHHHHHHH
Q 043907          311 HFKA-GIFFFFGGLVLI  326 (330)
Q Consensus       311 ~~g~-~~~~~~~~~~~~  326 (330)
                      ..+| +.|++.+.+.++
T Consensus       153 ~~gwr~~f~~~~~~~~~  169 (382)
T PRK10091        153 EFSWRYTFLLIAVFNIA  169 (382)
T ss_pred             hccHHHHHHHHHHHHHH
Confidence            8885 566665554433

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.44  E-value=2.4e-12  Score=106.43  Aligned_cols=155  Identities=16%  Similarity=0.119  Sum_probs=115.3

Q ss_pred             hhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCC
Q 043907          160 TGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGD  239 (330)
Q Consensus       160 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (330)
                      .+........|.+.++.+.++.+.+ +..+...++..++.++.|+++||+|||+.+..+..+..++.+........    
T Consensus        13 ~~~~~~~~~~~~~~~~~~~s~~~~g-~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~----   87 (365)
T TIGR00900        13 IGTAITQVALPLYVLAGTGSASVLS-LAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALL----   87 (365)
T ss_pred             HHHHHHHHHHHHHHHHhhccHHHHH-HHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHc----
Confidence            3345555666778888888888888 89999999999999999999999999999998888777776665554210    


Q ss_pred             CCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHH
Q 043907          240 HGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFF  318 (330)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~  318 (330)
                          +..+.+.......+.+.+.+. ..+....++.|.+|+++|++..++.+....++..++|.+.+.+.+..+| ..++
T Consensus        88 ----~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~  162 (365)
T TIGR00900        88 ----GGLNIWQVYVLAGILAIAQAF-FTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIW  162 (365)
T ss_pred             ----CCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence                111344444444444444333 3345566778999999999999999999999999999999999988885 4455


Q ss_pred             HHHHHH
Q 043907          319 FFGGLV  324 (330)
Q Consensus       319 ~~~~~~  324 (330)
                      +.+...
T Consensus       163 ~~~~~~  168 (365)
T TIGR00900       163 VDAVGF  168 (365)
T ss_pred             HHHHHH
Confidence            444433

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.44  E-value=4.5e-12  Score=104.25  Aligned_cols=154  Identities=19%  Similarity=0.124  Sum_probs=120.0

Q ss_pred             HHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHH
Q 043907          157 QQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQ  236 (330)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~  236 (330)
                      .............|.+.++.|.++.+.+ ...+...+...++.++.|++.||+|||+.+..+.....++.+.....    
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~----   84 (352)
T cd06174          10 LSGLDRGLLSPALPLLAEDLGLSASQAG-LIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA----   84 (352)
T ss_pred             HHHHhhhhhHhhHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh----
Confidence            3344556677778888888899999988 89999999999999999999999999999999988888887776653    


Q ss_pred             hCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-h
Q 043907          237 LGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-G  315 (330)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~  315 (330)
                               ++.+.......+.+.+.+.. .+....+..|.+|+|+|++..++.+....++..+++.+.+.+.+..++ .
T Consensus        85 ---------~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  154 (352)
T cd06174          85 ---------SSLWLLLVGRFLLGLGGGAL-YPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRW  154 (352)
T ss_pred             ---------ccHHHHHHHHHHHHcccccc-cHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence                     33444455555555554433 344556678999999999999999999999999999999999988774 4


Q ss_pred             hHHHHHHHHH
Q 043907          316 IFFFFGGLVL  325 (330)
Q Consensus       316 ~~~~~~~~~~  325 (330)
                      .+++.+.+.+
T Consensus       155 ~~~~~~~~~~  164 (352)
T cd06174         155 LFLILAILGL  164 (352)
T ss_pred             HHHHHHHHHH
Confidence            4554444433

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.44  E-value=1.6e-12  Score=106.91  Aligned_cols=153  Identities=20%  Similarity=0.189  Sum_probs=117.6

Q ss_pred             hhhHhHHHhHH-HHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhC
Q 043907          160 TGINIVGLYSP-VLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLG  238 (330)
Q Consensus       160 ~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (330)
                      .+........| .+.+++|.++.+.+ +..+...+...++.++.|+++||+|||+.+..+..+..++.+...+.      
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~------   82 (352)
T PF07690_consen   10 FGFSIISPALPLYLAEELGLSPSQIG-LLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA------   82 (352)
T ss_dssp             HHHHHHHHHHH-HHHCCSTTTSHCHH-HHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHHHHHHccCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh------
Confidence            34455566667 66688899999999 89999999999999999999999999999999988888884444432      


Q ss_pred             CCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhH
Q 043907          239 DHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIF  317 (330)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~  317 (330)
                             ++.+...+...+.+.+.+ ...+....++.|.+|+++|+++.++.+....++..+++.+.+.+.+..+| ..+
T Consensus        83 -------~~~~~~~~~~~l~g~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~  154 (352)
T PF07690_consen   83 -------SNFWLLLIARFLLGIGSG-FFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAF  154 (352)
T ss_dssp             -------CCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHH
T ss_pred             -------hhHHHHhhhccccccccc-cccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccccccc
Confidence                   233344444455544443 33445566778999999999999999999999999999999999888885 567


Q ss_pred             HHHHHHHHHh
Q 043907          318 FFFGGLVLIM  327 (330)
Q Consensus       318 ~~~~~~~~~~  327 (330)
                      ++.++++++.
T Consensus       155 ~~~~~~~~~~  164 (352)
T PF07690_consen  155 LISAILSLIA  164 (352)
T ss_dssp             HHHHHHHHHH
T ss_pred             ccccchhhhh
Confidence            7766666554

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.44  E-value=5.6e-12  Score=107.28  Aligned_cols=159  Identities=10%  Similarity=0.102  Sum_probs=117.7

Q ss_pred             HHHHHHHHHHhhhhHhHHHhHHHHHHh---cCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH-hCcchhhhHhhHHHHH
Q 043907          149 MAILIPFFQQVTGINIVGLYSPVLFRT---LKLGESTSLLLSAVVAGGMGTVLAIISMILADK-FGRKVLFLVGGMQMLV  224 (330)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~  224 (330)
                      .......+..-.+++....++|.++++   +|++..+.+ .......+...++.+++|+++|| +|||+.+..+..+..+
T Consensus        13 ~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag-~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~   91 (475)
T TIGR00924        13 FTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAF-IIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLML   91 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHH-HHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHH
Confidence            334444444456667778888888754   799999999 88999999999999999999999 8999999999998888


Q ss_pred             HHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhh---hhhhhhHHHHHHHHHHHHH
Q 043907          225 SQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEI---RSAGQSITVAVNFVFTFLT  301 (330)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~---r~~~~g~~~~~~~~~~~~~  301 (330)
                      +.+.+...             .+.+.......+.+.+.+. ..+....+++|.+|+++   |+++.++.+...++|+.++
T Consensus        92 g~~~~~~~-------------~~~~~~~~~~~l~g~g~g~-~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig  157 (475)
T TIGR00924        92 GHFMLAMS-------------IYPDLIFYGLGTIAVGSGL-FKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFIS  157 (475)
T ss_pred             HHHHHHhc-------------ccHhHHHHHHHHHHhcccc-ccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHH
Confidence            88776653             2222233333333333332 33444566678887654   8899999999999999999


Q ss_pred             HHhhhhHHhhccc-hhHHHHHH
Q 043907          302 AQTFLPMLCHFKA-GIFFFFGG  322 (330)
Q Consensus       302 ~~~~~~~~~~~g~-~~~~~~~~  322 (330)
                      |.+.+.+.++.+| ..|.+.++
T Consensus       158 ~~l~g~l~~~~g~~~~f~~~~~  179 (475)
T TIGR00924       158 PLLAGVIAENYGYHVGFNLAAV  179 (475)
T ss_pred             HHHHHHHHHhcChHHHHHHHHH
Confidence            9999999988885 45555443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.43  E-value=7.8e-12  Score=105.11  Aligned_cols=157  Identities=15%  Similarity=0.138  Sum_probs=112.7

Q ss_pred             HHHHHhhhhHhHHHhHHHHHHhcCCCCchh-----hHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHH
Q 043907          154 PFFQQVTGINIVGLYSPVLFRTLKLGESTS-----LLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVI  228 (330)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~  228 (330)
                      ..+....+......+.|.+.++.|.+..+.     + ...+...+...++.++.|+++||+|||+.+..+.....++.+.
T Consensus        22 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~  100 (408)
T PRK09874         22 GCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSG-LVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVL  100 (408)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHH
Confidence            333344555666778888888888886543     5 6778888899999999999999999999999888777777665


Q ss_pred             HHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhH
Q 043907          229 IGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPM  308 (330)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~  308 (330)
                      +...             ++.+...+...+.+.+.  +..+....++.|..|+++|+++.++.+....++..+++.+.+.+
T Consensus       101 ~~~~-------------~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l  165 (408)
T PRK09874        101 MGLA-------------QNIWQFLILRALLGLLG--GFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLL  165 (408)
T ss_pred             HHHH-------------hhHHHHHHHHHHHHHhh--hhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5443             22333333333333322  22344445567889999999999999999999999999999999


Q ss_pred             Hhhccc-hhHHHHHHHHHH
Q 043907          309 LCHFKA-GIFFFFGGLVLI  326 (330)
Q Consensus       309 ~~~~g~-~~~~~~~~~~~~  326 (330)
                      .+..+| ..+++.+++.++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~  184 (408)
T PRK09874        166 ADSYGLRPVFFITASVLFL  184 (408)
T ss_pred             HHHhCHHHHHHHHHHHHHH
Confidence            888885 456655554443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.43  E-value=2.6e-12  Score=105.56  Aligned_cols=148  Identities=10%  Similarity=-0.058  Sum_probs=106.2

Q ss_pred             HhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043907          163 NIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGG  242 (330)
Q Consensus       163 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (330)
                      ..+....|.+.+++|.++.+.+ +..+...++..++++..|+++||+|||+++.........+. .....          
T Consensus         8 ~~~~~~lp~i~~~~~~s~~~~g-~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~-~~~~~----------   75 (368)
T TIGR00903         8 VTFSPVLSLVAEDIDVSKEELG-LLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAA-GRLLD----------   75 (368)
T ss_pred             HHHHhhHHHHHHHhCcCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH-HHHHH----------
Confidence            4455677888899999999998 88899999999999999999999999987654433333322 11111          


Q ss_pred             CCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccch-hHHHHH
Q 043907          243 CSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAG-IFFFFG  321 (330)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~  321 (330)
                        ..+.........+.+.+.+.  .+......+|.+|+++|+++.++.+....+|..+++.+.+.+.++.||. .|++.+
T Consensus        76 --~~~~~~l~~~R~l~G~g~~~--~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~  151 (368)
T TIGR00903        76 --PFNYEWLLACQLLAALGQPF--LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIA  151 (368)
T ss_pred             --hccHHHHHHHHHHHHhHhHH--HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHH
Confidence              02334444444554444432  2222334479999999999999999999999999999999999888874 555556


Q ss_pred             HHHHH
Q 043907          322 GLVLI  326 (330)
Q Consensus       322 ~~~~~  326 (330)
                      ++.++
T Consensus       152 ~l~~~  156 (368)
T TIGR00903       152 AVAAA  156 (368)
T ss_pred             HHHHH
Confidence            55544

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.43  E-value=1.9e-12  Score=108.28  Aligned_cols=149  Identities=18%  Similarity=0.062  Sum_probs=116.9

Q ss_pred             hHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCC
Q 043907          162 INIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHG  241 (330)
Q Consensus       162 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (330)
                      ........|.+.+++|.++.+.+ +..+...++..++.++.|+++||+|||+.+..+..+..++.......         
T Consensus        10 ~~~~~~~~~~~~~~~g~s~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~---------   79 (399)
T TIGR00893        10 RANLSFAAPMLQEDLGLSAAQYG-YVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA---------   79 (399)
T ss_pred             HHhhhHhHHHHHHhhCCChhhHH-HHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH---------
Confidence            34555667788888999999999 99999999999999999999999999999999888888777776654         


Q ss_pred             CCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHH
Q 043907          242 GCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFF  320 (330)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~  320 (330)
                          .+.+.......+.+.+.+. ..+....++.|.+|+++|+++.++.+....++..+++.+.+.+.+..+| +.|++.
T Consensus        80 ----~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  154 (399)
T TIGR00893        80 ----GAYVSLYILRVLLGAAEAP-FFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIE  154 (399)
T ss_pred             ----cCHHHHHHHHHHHHHHHHh-hhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHH
Confidence                3344444454555544433 3345566778999999999999999999999999999999998888885 455555


Q ss_pred             HHHHH
Q 043907          321 GGLVL  325 (330)
Q Consensus       321 ~~~~~  325 (330)
                      +++.+
T Consensus       155 ~~~~~  159 (399)
T TIGR00893       155 GVLGI  159 (399)
T ss_pred             HHHHH
Confidence            44443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.42  E-value=4.4e-12  Score=106.81  Aligned_cols=154  Identities=14%  Similarity=0.036  Sum_probs=109.2

Q ss_pred             hhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCC
Q 043907          160 TGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGD  239 (330)
Q Consensus       160 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (330)
                      .+........|.+.++.+.++.+.+ ...+...+...+++++.|+++||+|||+.+..+..+.+++...+......    
T Consensus        31 ~~~~~~~~~~~~~~~~~~~s~~~~g-~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~----  105 (417)
T PRK10489         31 FGLGLLGVAVPVQIQMMTGSTLQVG-LSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFL----  105 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHc----
Confidence            3445566677888888888888888 89999999999999999999999999999888877776665554432110    


Q ss_pred             CCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHH
Q 043907          240 HGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFF  318 (330)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~  318 (330)
                          ..++.+.......+.+.+.+... +....++.|..|+++|+++.++.+....++..+++.+.+.+.+..++ +.++
T Consensus       106 ----~~~~~~~l~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~  180 (417)
T PRK10489        106 ----PEPSLLAIYLLGLWDGFFGSLGV-TALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYG  180 (417)
T ss_pred             ----CCCcHHHHHHHHHHHHHHHHHHH-HHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHH
Confidence                11222333333333333333222 23345568999999999999999999999999999999999887774 4444


Q ss_pred             HHHHH
Q 043907          319 FFGGL  323 (330)
Q Consensus       319 ~~~~~  323 (330)
                      +.++.
T Consensus       181 ~~~~~  185 (417)
T PRK10489        181 LAAAG  185 (417)
T ss_pred             HHHHH
Confidence            44333

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.42  E-value=6.1e-12  Score=105.56  Aligned_cols=152  Identities=16%  Similarity=0.189  Sum_probs=112.3

Q ss_pred             hhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCC
Q 043907          160 TGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGD  239 (330)
Q Consensus       160 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (330)
                      ..........|.+.+++|.++.+.+ ...+...++..++.++.|+++||+|||+.+..+.....++.+.....       
T Consensus        27 ~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-------   98 (406)
T PRK15402         27 IANDMIQPGMLAVVEDFNAGAEWVP-TSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA-------   98 (406)
T ss_pred             hhhhhHhcchHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH-------
Confidence            3444455566777889999998888 88889999999999999999999999999998888877777665543       


Q ss_pred             CCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHH
Q 043907          240 HGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFF  318 (330)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~  318 (330)
                            ++.+.......+.+.+.+. ..+.....+.|.+|+++|.+..++......++..++|.+.+.+.+..+| +.++
T Consensus        99 ------~~~~~l~~~~~l~G~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~  171 (406)
T PRK15402         99 ------QSIEQFTLLRFLQGIGLCF-IGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFV  171 (406)
T ss_pred             ------ccHHHHHHHHHHHHhHhhh-HHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHH
Confidence                  2233333333333333332 2234456668999999999999998888888889999999998887775 5666


Q ss_pred             HHHHHHHH
Q 043907          319 FFGGLVLI  326 (330)
Q Consensus       319 ~~~~~~~~  326 (330)
                      +.++++++
T Consensus       172 ~~~~~~~~  179 (406)
T PRK15402        172 LFAALAAL  179 (406)
T ss_pred             HHHHHHHH
Confidence            65655544

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.42  E-value=5.1e-12  Score=105.04  Aligned_cols=150  Identities=9%  Similarity=-0.008  Sum_probs=114.1

Q ss_pred             HHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHH
Q 043907          148 VMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQV  227 (330)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~  227 (330)
                      +.......+.............|.+.++.|.++.+.+ +..+...++..++.++.|+++||+|||+.+..+..+..++..
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G-~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~   86 (381)
T PRK03633          8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVG-VVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCA   86 (381)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555556667778889999999999999999 999999999999999999999999999999998888888777


Q ss_pred             HHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhh
Q 043907          228 IIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLP  307 (330)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~  307 (330)
                      .....             ++.+...+...+.+.+.+.. .+.....+.|..|+++|+++.+..+....+|..+++.+.+.
T Consensus        87 ~~~~~-------------~~~~~l~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  152 (381)
T PRK03633         87 GLGLM-------------VGFWSWLAWRFVAGIGCAMI-WVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSK  152 (381)
T ss_pred             HHHHh-------------ccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            66553             33444444444444443322 23323334577888999999999999999999999999998


Q ss_pred             HHhhc
Q 043907          308 MLCHF  312 (330)
Q Consensus       308 ~~~~~  312 (330)
                      +.+..
T Consensus       153 l~~~~  157 (381)
T PRK03633        153 VSTEL  157 (381)
T ss_pred             ccccc
Confidence            87654

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.42  E-value=7.8e-12  Score=104.51  Aligned_cols=149  Identities=14%  Similarity=0.066  Sum_probs=109.4

Q ss_pred             hhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCC
Q 043907          161 GINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDH  240 (330)
Q Consensus       161 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (330)
                      .........|.+.+++|.++.+.+ ...+...++..++.++.|+++||+|||+.+..+.....++.+.....        
T Consensus        23 ~~~~~~p~~~~i~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~--------   93 (394)
T PRK11652         23 AQTIYVPAIADMARDLNVREGAVQ-AVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA--------   93 (394)
T ss_pred             HHHHHhccHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH--------
Confidence            334444557888899999999999 88999999999999999999999999999998887777776665442        


Q ss_pred             CCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHH
Q 043907          241 GGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFF  319 (330)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~  319 (330)
                           ++.+.......+.+.+.+. ..+....+..|.++.++++.+.+..+....++..++|.+.+.+.+..|| ..|++
T Consensus        94 -----~~~~~l~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~  167 (394)
T PRK11652         94 -----HSLTVLIAASAIQGLGTGV-GGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLF  167 (394)
T ss_pred             -----ccHHHHHHHHHHHHhhhhH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHH
Confidence                 2233333333333333322 2234445567888889999999999988889999999999998887785 45555


Q ss_pred             HHHHH
Q 043907          320 FGGLV  324 (330)
Q Consensus       320 ~~~~~  324 (330)
                      .+++.
T Consensus       168 ~~~~~  172 (394)
T PRK11652        168 LLLLG  172 (394)
T ss_pred             HHHHH
Confidence            44433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.42  E-value=5.5e-12  Score=107.07  Aligned_cols=148  Identities=18%  Similarity=0.247  Sum_probs=109.2

Q ss_pred             HhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043907          163 NIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGG  242 (330)
Q Consensus       163 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (330)
                      .....+.|.+.+++|.+..+.+ +..+...+...++.++.|+++||+|||+.++.+..+..++.+.....          
T Consensus        36 ~~~~~~~~~i~~~~g~s~~~~~-~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~----------  104 (455)
T TIGR00892        36 KAVTVFFKELQQIFQATYSETA-WISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFS----------  104 (455)
T ss_pred             cchhhhHHHHHHHhCcchhHHH-HHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHh----------
Confidence            3456678888899999999988 88888888889999999999999999999998888777777666553          


Q ss_pred             CCcchhHHHHHHH-HHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHH
Q 043907          243 CSEGYAYLILVLV-CLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFF  320 (330)
Q Consensus       243 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~  320 (330)
                         .+.+...... .+.+.+.+....+ ...++.|.+| ++|+++.|+.+....++..++|.+.+.+.+..|| +.|++.
T Consensus       105 ---~~~~~l~~~~~~l~G~~~~~~~~~-~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~  179 (455)
T TIGR00892       105 ---SNVIELYLTAGFITGLGLAFNFQP-SLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLIL  179 (455)
T ss_pred             ---hhHHHHHHHHHHHHHhcchhhhhH-HHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence               2222222221 2333333332232 3345567776 7899999999999999999999999999998886 667766


Q ss_pred             HHHHHH
Q 043907          321 GGLVLI  326 (330)
Q Consensus       321 ~~~~~~  326 (330)
                      +++.++
T Consensus       180 ~~~~~~  185 (455)
T TIGR00892       180 GGLLLH  185 (455)
T ss_pred             HHHHHH
Confidence            665543

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.42  E-value=3.8e-12  Score=105.84  Aligned_cols=156  Identities=10%  Similarity=0.084  Sum_probs=107.9

Q ss_pred             cchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHH
Q 043907          143 YRPQPVMAILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQ  221 (330)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~  221 (330)
                      .-++.+....+.+...+..-.......+.+.+ ++|+++++.+ +..+...+...++++..|++.||+|.|+++..+..+
T Consensus        31 ~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g-~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll  109 (462)
T PRK15034         31 IARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLF-LLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAI  109 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            33455655666665555554555555555555 7999999999 888889999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHH
Q 043907          222 MLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLT  301 (330)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~  301 (330)
                      ..+..+...+....        ..++.+..++...+.+.+ +..+. .....+++.+|+++||++.|+....+++|..+.
T Consensus       110 ~~i~~~~~~~a~~~--------~~~s~~~lli~r~l~Gig-g~~f~-~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~  179 (462)
T PRK15034        110 LIIPCVWLGIAVQN--------PNTPFGIFIVIALLCGFA-GANFA-SSMGNISFFFPKAKQGSALGINGGLGNLGVSVM  179 (462)
T ss_pred             HHHHHHHHHHHHcc--------cCCCHHHHHHHHHHHHHH-HHhHH-HHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHH
Confidence            88777766653100        012333344444444433 33333 445566899999999999999977777777776


Q ss_pred             HHhhhhHH
Q 043907          302 AQTFLPML  309 (330)
Q Consensus       302 ~~~~~~~~  309 (330)
                      +.+.+.+.
T Consensus       180 ~~l~p~~i  187 (462)
T PRK15034        180 QLVAPLVI  187 (462)
T ss_pred             HHHHHHHH
Confidence            66665543

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.41  E-value=1.2e-10  Score=98.00  Aligned_cols=118  Identities=8%  Similarity=-0.033  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCc--ch-----hhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHh
Q 043907          186 LSAVVAGGMGTVLAIISMILADKFGR--KV-----LFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLC  258 (330)
Q Consensus       186 ~~~~~~~~~~~~~~~~~g~l~d~~gr--r~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (330)
                      +..++..+..++.+++..++-.|..|  |.     =+..++++++++.+.+.+....  .++  ....+.++.+....+.
T Consensus       312 ~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~--~~~--~~~~s~~wl~~~~~~~  387 (493)
T PRK15462        312 MFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARW--SAM--YGHSSLPLMVLGLAVM  387 (493)
T ss_pred             HHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhh--cCC--CCCcCHHHHHHHHHHH
Confidence            56677788888888888888777633  21     1456777777776666543321  111  1123344444444444


Q ss_pred             hcccccccccccccccccccchhhhhhhhhHHHHHH-HHHHHHHHHhhhhH
Q 043907          259 SSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVN-FVFTFLTAQTFLPM  308 (330)
Q Consensus       259 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~-~~~~~~~~~~~~~~  308 (330)
                      .. .....+|+....++++.|++.||+.+|...... .+++.++..+.+..
T Consensus       388 t~-gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~  437 (493)
T PRK15462        388 GF-AELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQT  437 (493)
T ss_pred             HH-HHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33 356778888888899999999999999986533 46666666555544

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.41  E-value=6.7e-12  Score=106.67  Aligned_cols=149  Identities=14%  Similarity=0.075  Sum_probs=100.6

Q ss_pred             HHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCC
Q 043907          165 VGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCS  244 (330)
Q Consensus       165 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (330)
                      +....|.+.++ |.+..+.+ ...+...++..++.++.|+++||+|||+++..+..+.+++.+.+.+...         .
T Consensus        48 ~~~~~p~l~~~-g~s~~~~g-~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~---------~  116 (452)
T PRK11273         48 FALAMPYLVEQ-GFSRGDLG-FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW---------A  116 (452)
T ss_pred             HHHhhHHHHHc-CCCHHHHH-HHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhc---------c
Confidence            45566777776 99999998 8899999999999999999999999999999998888877776655310         0


Q ss_pred             cchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhh-hhHHhhccc-hhHHHHHH
Q 043907          245 EGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTF-LPMLCHFKA-GIFFFFGG  322 (330)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~g~-~~~~~~~~  322 (330)
                      ..+.+.......+.+.+.+....+. ...+.|.+|+++|+++.++.+....+++.+.+++. ..+....+| ..|++.++
T Consensus       117 ~~~~~~~~~~~~l~gi~~g~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~  195 (452)
T PRK11273        117 TSSIAVMFVLLFLCGWFQGMGWPPC-GRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAF  195 (452)
T ss_pred             cccHHHHHHHHHHHHHHHhccchHH-HHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            1122333333333343444333333 33457889999999999999888888875544443 233333354 45555544


Q ss_pred             HHH
Q 043907          323 LVL  325 (330)
Q Consensus       323 ~~~  325 (330)
                      +++
T Consensus       196 ~~~  198 (452)
T PRK11273        196 AAI  198 (452)
T ss_pred             HHH
Confidence            433

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.41  E-value=1.3e-11  Score=105.17  Aligned_cols=152  Identities=12%  Similarity=0.087  Sum_probs=111.3

Q ss_pred             HHHHhhhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH-hCcchhhhHhhHHHHHHHHHHHHH
Q 043907          155 FFQQVTGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTVLAIISMILADK-FGRKVLFLVGGMQMLVSQVIIGSI  232 (330)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~  232 (330)
                      .+..-.+++....+++.++ +++|++..+.. +..........+..+++|+++|| +|||+.+..+.++..++.+.+.+.
T Consensus        23 ~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~-~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~  101 (489)
T PRK10207         23 ELWERFGYYGVQGILAVFFVKQLGFSQEQAF-ITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMS  101 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHh
Confidence            3334456677777777666 56899988888 77777777778888899999999 999999999999999988877753


Q ss_pred             HHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchh--hhhhhhhHHHHHHHHHHHHHHHhhhhHHh
Q 043907          233 MAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLE--IRSAGQSITVAVNFVFTFLTAQTFLPMLC  310 (330)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~~~g~~~~~~~~~~~~~~~~~~~~~~  310 (330)
                      .            ...........+.+.+.+.. .|....++.|.+|++  .|+.+.++.+...++|..++|.+.+.+.+
T Consensus       102 ~------------~~~~ll~~~~~l~~ig~g~~-~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~  168 (489)
T PRK10207        102 L------------LKPDLIFIALGTIAVGNGLF-KANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIAD  168 (489)
T ss_pred             c------------cchhHHHHHHHHHHhccccc-cCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            1            11112222333333333333 334456778999877  45788999999999999999999999999


Q ss_pred             hccc-hhHHHH
Q 043907          311 HFKA-GIFFFF  320 (330)
Q Consensus       311 ~~g~-~~~~~~  320 (330)
                      +.|| +.|++.
T Consensus       169 ~~gw~~~F~i~  179 (489)
T PRK10207        169 KFGYSVTYNLC  179 (489)
T ss_pred             hhChHHHHHHH
Confidence            9996 455553

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.39  E-value=3.5e-12  Score=106.04  Aligned_cols=149  Identities=13%  Similarity=0.029  Sum_probs=113.3

Q ss_pred             hhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCC
Q 043907          161 GINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDH  240 (330)
Q Consensus       161 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (330)
                      .........|.+.+++|.+..+.+ +..+...++..++.++.|+++||+|||+.+..+..+..++.++....        
T Consensus        10 ~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--------   80 (379)
T TIGR00881        10 VRKNFALAMPYLVEEIGLSKTDLG-LLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS--------   80 (379)
T ss_pred             hHHhhhhhhHHHHHHhCCCHhHHH-HHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh--------
Confidence            345566677888888999999999 89999999999999999999999999999999988888887777654        


Q ss_pred             CCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHH-hhhhHHhhccc-hhHH
Q 043907          241 GGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQ-TFLPMLCHFKA-GIFF  318 (330)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~-~~~~  318 (330)
                           .+.+...+...+.+.+.+.. .+....++.|.+|+++|+++.++.+....++..+++. +.+.+.+..+| ..++
T Consensus        81 -----~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  154 (379)
T TIGR00881        81 -----TSLWVMAALWALNGIFQGMG-WPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFI  154 (379)
T ss_pred             -----hhHHHHHHHHHHHHhhcccc-CCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHH
Confidence                 33444444444444444433 3455667789999999999999999999999999994 55555566665 4555


Q ss_pred             HHHHHH
Q 043907          319 FFGGLV  324 (330)
Q Consensus       319 ~~~~~~  324 (330)
                      +.+++.
T Consensus       155 ~~~~~~  160 (379)
T TIGR00881       155 VPGIIA  160 (379)
T ss_pred             HHHHHH
Confidence            555443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.39  E-value=1.2e-11  Score=103.63  Aligned_cols=160  Identities=13%  Similarity=-0.086  Sum_probs=111.8

Q ss_pred             HHHHHHHHHhhhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHH
Q 043907          150 AILIPFFQQVTGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVI  228 (330)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~  228 (330)
                      ...+..+....+.......+|.+. ++.|.++.+.+ +..+...+...+++++.|+++||+|||+++..+.....++.+.
T Consensus        19 ~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g-~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~   97 (399)
T PRK05122         19 SIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAG-LVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLL   97 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHH-HHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHH
Confidence            344444444455566666777655 67899999999 9999999999999999999999999999999988877776555


Q ss_pred             HHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhH
Q 043907          229 IGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPM  308 (330)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~  308 (330)
                      ........     +....+....++...+.+.+.+.. .+....+..|..|+++|+++.++.......+..+++.+.+.+
T Consensus        98 ~~~~~~~~-----~~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l  171 (399)
T PRK05122         98 YLLAGLLA-----AWPVLSLLLLLLGRLLLGIGESLA-GTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLL  171 (399)
T ss_pred             HHHhhhhh-----ccchhHHHHHHHHHHHHHhhHHhh-cchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHH
Confidence            44331100     000011223333334444443322 334445557899999999999998888888889999999999


Q ss_pred             Hhhccchh
Q 043907          309 LCHFKAGI  316 (330)
Q Consensus       309 ~~~~g~~~  316 (330)
                      .+..||..
T Consensus       172 ~~~~g~~~  179 (399)
T PRK05122        172 YHWGGLAG  179 (399)
T ss_pred             HHcccHHH
Confidence            88888643

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.39  E-value=9.5e-12  Score=103.66  Aligned_cols=132  Identities=14%  Similarity=0.073  Sum_probs=101.4

Q ss_pred             HhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043907          163 NIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGG  242 (330)
Q Consensus       163 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (330)
                      .......+...++.+.++.+.+ +..+...+...+..++.|+++||+|||+++..+..+..++.+.+...          
T Consensus        20 ~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~----------   88 (393)
T PRK11195         20 NALLFAAIALLKELHYPDWSQP-LLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG----------   88 (393)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH----------
Confidence            3344445556678888888878 88899999999999999999999999999999988887766654432          


Q ss_pred             CCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhc
Q 043907          243 CSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHF  312 (330)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  312 (330)
                         .+.   .....+.+.+ .....|....++.|.+|+++|++++|+.+.....+..++|.+.+.+.+..
T Consensus        89 ---~~~---~~~r~l~G~~-~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~  151 (393)
T PRK11195         89 ---IHP---LLAYGLVGIG-AAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH  151 (393)
T ss_pred             ---HHH---HHHHHHHHHH-HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               111   2222233333 23445666777899999999999999999999999999999999998864

>TIGR00897 2A0118 polyol permease family

Probab=99.39  E-value=1.6e-11  Score=102.86  Aligned_cols=145  Identities=15%  Similarity=0.035  Sum_probs=103.3

Q ss_pred             HhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHh
Q 043907          158 QVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQL  237 (330)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~  237 (330)
                      ...+......+.+.+.++.|.++.+.+ ...+...++..++.++.|++.||+|||+.+..+..+..++.+.......   
T Consensus        25 ~~~~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~---  100 (402)
T TIGR00897        25 FMTGDGLEQGWLSPFLKALGLSPQQSA-SAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGL---  100 (402)
T ss_pred             HHHhhhhHHHhHHHHHHHhCCCHHHhH-HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhc---
Confidence            334444555677778888999999999 8999999999999999999999999999999988888777654432110   


Q ss_pred             CCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHH-HHHHHhhhhHHhhcc
Q 043907          238 GDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFT-FLTAQTFLPMLCHFK  313 (330)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~g  313 (330)
                            ...+.+.......+.+.+.+.. .+.....+.|.+|+++|+++.|+.++...++. ..++.+.+.+.+..|
T Consensus       101 ------~~~~~~~l~~~~~i~G~g~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g  170 (402)
T TIGR00897       101 ------GHANYPLILLFYGIRGLGYPLF-AYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFG  170 (402)
T ss_pred             ------cCccHHHHHHHHHHHHcchHHH-HhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence                  1122333333333333333322 22233445688899999999999999988886 578888888887777

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.39  E-value=1.6e-11  Score=102.59  Aligned_cols=150  Identities=14%  Similarity=0.070  Sum_probs=111.7

Q ss_pred             hhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhC
Q 043907          160 TGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLG  238 (330)
Q Consensus       160 ~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (330)
                      .+......+.+.++ ++.|++..+.+ +..+...+...+..++.|+++||+|||+.+..+.....++.+.....      
T Consensus        24 ~~~~~~~~~~~~~~~~~~g~s~~~~g-l~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~------   96 (400)
T PRK11646         24 LGFFVVFPLISIRFVDQLGWAAVMVG-IALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA------   96 (400)
T ss_pred             HHHHHHHHHHHHHHHHHhCCcHHHHH-HHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh------
Confidence            44455555666555 67899999999 88888889999999999999999999999999988888887776543      


Q ss_pred             CCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhH
Q 043907          239 DHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIF  317 (330)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~  317 (330)
                             ++.+.......+.+.+.+ ...|....++.|.+|+++|+++.|+.+....++..++|.+.+.+. ..+| +.|
T Consensus        97 -------~~~~~l~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f  167 (400)
T PRK11646         97 -------HEPWLLWLSCILSGLGGT-LFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVC  167 (400)
T ss_pred             -------ccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHH
Confidence                   333334444444333332 223444556689999999999999999999999999999999988 5674 556


Q ss_pred             HHHHHHHH
Q 043907          318 FFFGGLVL  325 (330)
Q Consensus       318 ~~~~~~~~  325 (330)
                      ++.+.+++
T Consensus       168 ~~~~~~~~  175 (400)
T PRK11646        168 ATGAVLFV  175 (400)
T ss_pred             HHHHHHHH
Confidence            65554443

>PRK12382 putative transporter; Provisional

Probab=99.37  E-value=1.1e-11  Score=103.46  Aligned_cols=156  Identities=13%  Similarity=-0.045  Sum_probs=106.9

Q ss_pred             HHHHHhhhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHH
Q 043907          154 PFFQQVTGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSI  232 (330)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~  232 (330)
                      ..+....+........|.+. +++|.+..+.+ ...+...+...+++++.|+++||+|||+.+..+.....++.+.....
T Consensus        23 ~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g-~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~  101 (392)
T PRK12382         23 AVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVG-IAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLA  101 (392)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHH-HHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhh
Confidence            33333344455555666654 67899999999 99999999999999999999999999999998877766554433221


Q ss_pred             HHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhc
Q 043907          233 MAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHF  312 (330)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  312 (330)
                      ...   .  .....+.+...+...+.+.+.+.. .+....++.|..|+++|+++.++.......+..++|.+.+.+.+..
T Consensus       102 ~~~---~--~~~~~~~~~l~~~r~l~G~~~~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~  175 (392)
T PRK12382        102 AIL---P--VSAPFKFALLVVGRLILGFGESQL-LTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHF  175 (392)
T ss_pred             hcc---c--cchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            100   0  000122233334344444443322 2333455578999999999999999888899999999999988888


Q ss_pred             cchh
Q 043907          313 KAGI  316 (330)
Q Consensus       313 g~~~  316 (330)
                      ||..
T Consensus       176 g~~~  179 (392)
T PRK12382        176 GFAA  179 (392)
T ss_pred             ChHH
Confidence            8643

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.37  E-value=6e-12  Score=107.43  Aligned_cols=155  Identities=10%  Similarity=-0.091  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHH
Q 043907          147 PVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQ  226 (330)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~  226 (330)
                      .+....+.+......-..+....|.+.+++|.+..+.+ +..+...++..++.++.|+++||+|||+++..+.+..++..
T Consensus        30 i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g-~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~  108 (467)
T PRK09556         30 SYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELG-MIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICM  108 (467)
T ss_pred             HHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHH
Confidence            33344444444333444455667888899999999999 89999999999999999999999999999988888877777


Q ss_pred             HHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhh
Q 043907          227 VIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFL  306 (330)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~  306 (330)
                      +.++.....        ..++.+...+...+.+.+.+... |....+++|.+|+++||++.|+.+....+|..+++.+..
T Consensus       109 ~~~~~~~~~--------~~~~~~~l~~~r~l~G~~~~~~~-~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~  179 (467)
T PRK09556        109 LGFGASLGS--------GSVSLGLMIALWALSGFFQSTGG-PCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVAL  179 (467)
T ss_pred             HHHHHHHhc--------ccchHHHHHHHHHHHHHHHhccc-hHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHH
Confidence            666553110        01334444444444554444444 344566789999999999999999999999999988887


Q ss_pred             hHHhh
Q 043907          307 PMLCH  311 (330)
Q Consensus       307 ~~~~~  311 (330)
                      .+.+.
T Consensus       180 ~~~~~  184 (467)
T PRK09556        180 WGANY  184 (467)
T ss_pred             HHHHh
Confidence            66654

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.36  E-value=8e-12  Score=103.88  Aligned_cols=149  Identities=15%  Similarity=0.102  Sum_probs=114.4

Q ss_pred             HhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043907          163 NIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGG  242 (330)
Q Consensus       163 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (330)
                      .......|.+.++.|.++.+.+ ...+...++..++.++.|++.||+|||+.+..+..+..++.......          
T Consensus         8 ~~~~p~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~----------   76 (377)
T PRK11102          8 DMYLPALPVIAADFGVSAGSVQ-MTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA----------   76 (377)
T ss_pred             HHHhccHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH----------
Confidence            3445667888888999999998 88899999999999999999999999999999888888887776653          


Q ss_pred             CCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHH
Q 043907          243 CSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFG  321 (330)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~  321 (330)
                         ++.+.......+.+.+.+ ...+....++.|.+|+++|+++.++.+....++..++|.+.+.+.+..+| +.+++.+
T Consensus        77 ---~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~  152 (377)
T PRK11102         77 ---QTIDQLIYMRFLHGLAAA-AASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLA  152 (377)
T ss_pred             ---ccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHH
Confidence               223333333444443333 22334456678999999999999999999999999999999999888885 5566555


Q ss_pred             HHHHH
Q 043907          322 GLVLI  326 (330)
Q Consensus       322 ~~~~~  326 (330)
                      .++++
T Consensus       153 ~~~~~  157 (377)
T PRK11102        153 LAAIL  157 (377)
T ss_pred             HHHHH
Confidence            54443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.36  E-value=8.6e-12  Score=105.60  Aligned_cols=169  Identities=12%  Similarity=0.046  Sum_probs=112.1

Q ss_pred             hHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHH
Q 043907          146 QPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVS  225 (330)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~  225 (330)
                      +.+....+................|.+.+ .|.++++.+ +..+...++..++.++.|+++||+|||+.+..+..+.+++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~  104 (438)
T TIGR00712        27 QVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELG-FALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAV  104 (438)
T ss_pred             HHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhH-HHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHH
Confidence            34444444444333333334455666555 599999999 8999999999999999999999999999988888777777


Q ss_pred             HHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhh
Q 043907          226 QVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTF  305 (330)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~  305 (330)
                      .+.......         ...+.........+.+.+.+..+.+. ...+.|.+|+++|+++.++.+....+++.+++.+.
T Consensus       105 ~~~~~~~~~---------~~~~~~~l~~~~~l~g~~~g~~~~~~-~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~  174 (438)
T TIGR00712       105 MLLMGFVPW---------ATSSIAIMFVLLFLNGWFQGMGWPPC-GRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLV  174 (438)
T ss_pred             HHHHhcccc---------ccchHHHHHHHHHHHHHHhhcchHHH-HHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHH
Confidence            666543210         00122222333333343444333333 44557999999999999999999999999998887


Q ss_pred             hhHHhh-ccc-hhHHHHHHHHHH
Q 043907          306 LPMLCH-FKA-GIFFFFGGLVLI  326 (330)
Q Consensus       306 ~~~~~~-~g~-~~~~~~~~~~~~  326 (330)
                      +...+. .+| ..|++.++++++
T Consensus       175 ~~~~~~~~~w~~~f~~~~~~~~i  197 (438)
T TIGR00712       175 LLGMAWFNDWHAALYFPAICAII  197 (438)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHH
Confidence            765543 455 456555555443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.36  E-value=3.2e-11  Score=98.95  Aligned_cols=153  Identities=11%  Similarity=0.043  Sum_probs=121.3

Q ss_pred             hHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCch-hhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHH
Q 043907          146 QPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGEST-SLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLV  224 (330)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~  224 (330)
                      ..+..|...++..+=  .......|.+.+++|+++++ .+ .+......+..+..++.|+++||+|.|+++..+.+..++
T Consensus        28 ~~~~lC~fGF~~e~R--~n~s~a~p~L~~elglT~~qv~G-~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl  104 (511)
T TIGR00806        28 LVLYLCFYGFMAQFR--PGESFITPYLLTVLNFTEETVTN-EIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVC  104 (511)
T ss_pred             HHHHHHHHHHHHHhh--chHHHHHHHHHHHcCCCHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            344445555554432  23344567777899999999 77 999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHh
Q 043907          225 SQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQT  304 (330)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~  304 (330)
                      ..+++++.             .+...+.+.-++++.+-+..+  ....++.+.+|+++|+++.|+.+....+|.++++++
T Consensus       105 ~t~L~~fa-------------~Sl~~L~i~R~llGvaEA~~~--A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L  169 (511)
T TIGR00806       105 VWLLLLLG-------------TSVWHMQLMEVFYSVTMAARI--AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVL  169 (511)
T ss_pred             HHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888875             445566666677776666555  445666899999999999999999999999999999


Q ss_pred             hhhHHhhccchhH
Q 043907          305 FLPMLCHFKAGIF  317 (330)
Q Consensus       305 ~~~~~~~~g~~~~  317 (330)
                      .+. ...+||..|
T Consensus       170 ~ql-l~s~gWr~y  181 (511)
T TIGR00806       170 GQL-LVTLGWISY  181 (511)
T ss_pred             HHH-HHhcCchhH
Confidence            999 556776443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.36  E-value=3.1e-11  Score=99.98  Aligned_cols=143  Identities=17%  Similarity=0.100  Sum_probs=106.7

Q ss_pred             HHHHHHHhhhhHhHHHhHHH-HHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHH
Q 043907          152 LIPFFQQVTGINIVGLYSPV-LFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIG  230 (330)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~  230 (330)
                      .+..+..+........+.|. +.+++|+++.+.+ +..+...++..++.++.|+++||+|||+.+..+..+..++.+...
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~   85 (366)
T TIGR00886         7 WFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLG-NLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAG   85 (366)
T ss_pred             HHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhh-HhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence            33344444555667778885 6688999999999 899999999999999999999999999999999888888877766


Q ss_pred             HHHHHHhCCCCCCCcc-hhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHH
Q 043907          231 SIMAAQLGDHGGCSEG-YAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPML  309 (330)
Q Consensus       231 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~  309 (330)
                      ..             + +.+...+...+.+.+. .... ....+++|.+|+++|+++.++......++..+++.+.+.+.
T Consensus        86 ~~-------------~~~~~~~~~~~~~~g~~~-~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~  150 (366)
T TIGR00886        86 LA-------------VQSYSVLLLLRLFIGIAG-GSFA-SCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPII  150 (366)
T ss_pred             HH-------------hhhHHHHHHHHHHHHHhc-hhhH-hHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            54             2 3333333434433332 2233 33456689999999999999998888888888877777665


Q ss_pred             h
Q 043907          310 C  310 (330)
Q Consensus       310 ~  310 (330)
                      +
T Consensus       151 ~  151 (366)
T TIGR00886       151 G  151 (366)
T ss_pred             H
Confidence            4

>PRK11043 putative transporter; Provisional

Probab=99.36  E-value=3.6e-11  Score=100.77  Aligned_cols=149  Identities=16%  Similarity=0.102  Sum_probs=108.2

Q ss_pred             HhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043907          163 NIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGG  242 (330)
Q Consensus       163 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (330)
                      +......|.+.++.|.++.+.+ ...+...++..++.++.|+++||+|||+.+..+..+..++.+.....          
T Consensus        23 ~~~~p~~~~i~~~~~~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----------   91 (401)
T PRK11043         23 DMYLPAFKAIQADLQTSASAVS-ASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV----------   91 (401)
T ss_pred             HHHHhhHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh----------
Confidence            3333444556788899999999 89999999999999999999999999999998887777766665543          


Q ss_pred             CCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHH
Q 043907          243 CSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFG  321 (330)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~  321 (330)
                         ++.+...+...+.+.+.+.. .+....++.|.+|+++++...+..+....++..++|.+.+.+.+..+| ..+++.+
T Consensus        92 ---~~~~~l~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~  167 (401)
T PRK11043         92 ---ESAAQLLVLRFVQAVGVCSA-AVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLF  167 (401)
T ss_pred             ---cCHHHHHHHHHHHHhhhHHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence               23333333333333332222 223345567999999899999988888889999999999999988886 4555555


Q ss_pred             HHHHH
Q 043907          322 GLVLI  326 (330)
Q Consensus       322 ~~~~~  326 (330)
                      ++.++
T Consensus       168 ~~~~~  172 (401)
T PRK11043        168 AITLL  172 (401)
T ss_pred             HHHHH
Confidence            44443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.35  E-value=6.2e-11  Score=94.64  Aligned_cols=153  Identities=14%  Similarity=0.107  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHH
Q 043907          147 PVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQ  226 (330)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~  226 (330)
                      .+......+...++.-..+....+.+-+++|+++.|.. ++.....+...+.+++.|.+.||+|.|+....++++..+-.
T Consensus        15 ~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~-ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~   93 (417)
T COG2223          15 NLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKG-LLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPC   93 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHH-HHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHH
Confidence            33334444444444444555555666688999999999 99999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhh
Q 043907          227 VIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFL  306 (330)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~  306 (330)
                      +.+.+..          ..++.+..+.+..+.+.+ +..+ .....++++.+|+|++|++.|+.. .+++|..+...+.+
T Consensus        94 ~~~~~a~----------~~~~~~~ll~~gll~G~~-GasF-av~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P  160 (417)
T COG2223          94 LGLAFAV----------TYPSTWQLLVIGLLLGLA-GASF-AVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAP  160 (417)
T ss_pred             HHHHHHc----------cCCchHHHHHHHHHHhcc-ccee-hcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHH
Confidence            8877763          112223444433333332 2222 344566789999999999999988 99999999999999


Q ss_pred             hHHhhcc
Q 043907          307 PMLCHFK  313 (330)
Q Consensus       307 ~~~~~~g  313 (330)
                      .+....+
T Consensus       161 ~v~~~~g  167 (417)
T COG2223         161 LVAVAFG  167 (417)
T ss_pred             HHHHHHh
Confidence            9988887

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.35  E-value=1.4e-11  Score=105.82  Aligned_cols=143  Identities=17%  Similarity=0.085  Sum_probs=102.7

Q ss_pred             HHHhHHHHHHhcCCC--------CchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHH
Q 043907          165 VGLYSPVLFRTLKLG--------ESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQ  236 (330)
Q Consensus       165 ~~~~~~~~~~~~g~~--------~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~  236 (330)
                      .....|....+.+.+        ..+.+ +..+...++..++.++.|+++||+|||+.+..+..+..++.+......   
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~---  122 (481)
T TIGR00879        47 IGGALALPAFEFKFTSANSDSYSSSLWG-LVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAA---  122 (481)
T ss_pred             hhhhhhcHHHHHhcCCcccCCCChhHHH-HHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhc---
Confidence            333445444444444        67777 889999999999999999999999999999998888887777665431   


Q ss_pred             hCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhh---hhHHhhcc
Q 043907          237 LGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTF---LPMLCHFK  313 (330)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~g  313 (330)
                             .....+..++...+.+.+.+.. .+....++.|.+|+++|+++.++.+....+|..+++.+.   ....+..+
T Consensus       123 -------~~~~~~~~~~~r~l~G~~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~  194 (481)
T TIGR00879       123 -------FALSVEMLIVGRVLLGIGVGIA-SALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLG  194 (481)
T ss_pred             -------cccchHHHHHHHHHHHhhhhHH-HhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCcc
Confidence                   1122234444455555554433 335566778999999999999999999999999999988   55445556


Q ss_pred             c-hhHHH
Q 043907          314 A-GIFFF  319 (330)
Q Consensus       314 ~-~~~~~  319 (330)
                      | +.|++
T Consensus       195 w~~~f~~  201 (481)
T TIGR00879       195 WRIPLGL  201 (481)
T ss_pred             HHHHHHH
Confidence            5 34444

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.34  E-value=2.9e-11  Score=100.88  Aligned_cols=136  Identities=15%  Similarity=-0.019  Sum_probs=109.4

Q ss_pred             HhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043907          163 NIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGG  242 (330)
Q Consensus       163 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (330)
                      .......|.+.+++|++..+.+ +..+...++..++.++.|++.||+|||+++..+..+.+++.+...+.          
T Consensus        26 ~~~~~~lp~i~~~~~~s~~~~g-~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a----------   94 (393)
T PRK09705         26 TSVGPLLPQLRQASGMSFSVAA-LLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELY----------   94 (393)
T ss_pred             hccchhHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHC----------
Confidence            4556678888999999999999 99999999999999999999999999999999999999999888764          


Q ss_pred             CCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhc-cc
Q 043907          243 CSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHF-KA  314 (330)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-g~  314 (330)
                         ++.+..+....+.+.+.+... +....++.|.+| ++|+.++|........+..+++.+.+.+.++. +|
T Consensus        95 ---~~~~~ll~~r~l~Gig~~~~~-~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w  162 (393)
T PRK09705         95 ---PQSALLLSSALLGGVGIGIIQ-AVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETW  162 (393)
T ss_pred             ---cchHHHHHHHHHHHhHHHHHh-hhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence               334444455555555554333 333455678887 77999999999988899999999999888875 45

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.34  E-value=9.7e-12  Score=103.33  Aligned_cols=149  Identities=17%  Similarity=0.228  Sum_probs=109.6

Q ss_pred             hHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCC
Q 043907          162 INIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHG  241 (330)
Q Consensus       162 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (330)
                      .+......|.+.+++|.++.+.+ +..+...++..++.++.|+++||+|||+.+..+..+..++.+.....         
T Consensus        19 ~~~~~~~~~~~~~~~~~s~~~~g-~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~---------   88 (377)
T TIGR00890        19 VYTWTLLAPPLGRYFGVGVTAVA-IWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIA---------   88 (377)
T ss_pred             HhhhhhHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHH---------
Confidence            34566678888899999999999 99999999999999999999999999999999988888888776654         


Q ss_pred             CCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHH
Q 043907          242 GCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFF  320 (330)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~  320 (330)
                          ++.+.......+.+.+.+.... .......|.+| ++|+++.++......++..+++++.+.+.+..+| +.+++.
T Consensus        89 ----~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~  162 (377)
T TIGR00890        89 ----DSLAALYLTYGLASAGVGIAYG-IALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYM  162 (377)
T ss_pred             ----HHHHHHHHHHHHHhHHHHHHHH-hHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHH
Confidence                3334344444444333332222 22334456676 5799999999988888888888888777777775 455555


Q ss_pred             HHHHHH
Q 043907          321 GGLVLI  326 (330)
Q Consensus       321 ~~~~~~  326 (330)
                      ++++++
T Consensus       163 ~~~~~~  168 (377)
T TIGR00890       163 GIIFLL  168 (377)
T ss_pred             HHHHHH
Confidence            554433

>PRK15075 citrate-proton symporter; Provisional

Probab=99.34  E-value=4.9e-11  Score=100.91  Aligned_cols=151  Identities=16%  Similarity=0.072  Sum_probs=103.7

Q ss_pred             hHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHH-----HHHHHHHHHHHHHHHHHHhCcchhhhHhhH
Q 043907          146 QPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVV-----AGGMGTVLAIISMILADKFGRKVLFLVGGM  220 (330)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~~~~~~g~l~d~~grr~~~~~~~~  220 (330)
                      +......+..+........+....|.+.++++.++.+......+.     ..+...+++++.|++.||+|||+.++.+..
T Consensus        15 ~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~   94 (434)
T PRK15075         15 RAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLS   94 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHH
Confidence            455666677777777778888899999999988776643122222     223335788999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCCCcchh------HHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHH
Q 043907          221 QMLVSQVIIGSIMAAQLGDHGGCSEGYA------YLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVN  294 (330)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~  294 (330)
                      ...++.+...+.           ++...      ...++...+.+.+.+..+. ....+++|.+|+++|+++.++.+...
T Consensus        95 ~~~~~~~l~~~~-----------~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~-~~~~~~~e~~p~~~rg~~~~~~~~~~  162 (434)
T PRK15075         95 IMASGTLLIAFV-----------PGYATIGLAAPLLVLLGRLLQGFSAGVELG-GVSVYLAEIATPGRKGFYTSWQSASQ  162 (434)
T ss_pred             HHHHHHHHHHhC-----------CcHHHHHHHHHHHHHHHHHHhhccccccHH-HHHHHHHhhCCcccchHHHHHHHHHH
Confidence            888887777654           11110      1223333444444443333 33467789999999999999988887


Q ss_pred             HHHHHHHHHhhhhH
Q 043907          295 FVFTFLTAQTFLPM  308 (330)
Q Consensus       295 ~~~~~~~~~~~~~~  308 (330)
                      +++..+++.+.+.+
T Consensus       163 ~~g~~~g~~~g~~l  176 (434)
T PRK15075        163 QVAVVFAALLGYLL  176 (434)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777776666554

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.33  E-value=7.1e-11  Score=101.22  Aligned_cols=157  Identities=12%  Similarity=0.063  Sum_probs=106.5

Q ss_pred             HHHHHHHHhhhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH-hCcchhhhHhhHHHHHHHHH
Q 043907          151 ILIPFFQQVTGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTVLAIISMILADK-FGRKVLFLVGGMQMLVSQVI  228 (330)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~  228 (330)
                      .....+....+++....+++.++ +++|+++.+.. ..............++.|+++|| +|||+.+..+..+..++...
T Consensus        26 ~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~-~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l  104 (500)
T PRK09584         26 IFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSI-TLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYAL  104 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence            33444444456677777888777 67899888877 66655555555556789999999 59999999998888887766


Q ss_pred             HHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchh--hhhhhhhHHHHHHHHHHHHHHHhhh
Q 043907          229 IGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLE--IRSAGQSITVAVNFVFTFLTAQTFL  306 (330)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~~~g~~~~~~~~~~~~~~~~~~  306 (330)
                      +.+.            ............+.+.+.+. ..+....++.|.+|++  .|+.+.++.++..++|+.++|.+.+
T Consensus       105 ~~~~------------~~~~~~l~~~~~l~gig~g~-~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g  171 (500)
T PRK09584        105 VAWS------------GHDAGIVYMGMATIAVGNGL-FKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATP  171 (500)
T ss_pred             HHHh------------cccHHHHHHHHHHHHHhhhc-ccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHH
Confidence            6543            11222222323333333332 2334455668998754  3456788889999999999999999


Q ss_pred             hHHhhccc-hhHHHHH
Q 043907          307 PMLCHFKA-GIFFFFG  321 (330)
Q Consensus       307 ~~~~~~g~-~~~~~~~  321 (330)
                      .+.++.|| +.|.+.+
T Consensus       172 ~l~~~~g~~~~F~i~~  187 (500)
T PRK09584        172 WLAAKYGWSVAFALSV  187 (500)
T ss_pred             HHHHhhCHHHHHHHHH
Confidence            99998885 4555544

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.32  E-value=8.5e-11  Score=98.31  Aligned_cols=143  Identities=14%  Similarity=0.044  Sum_probs=108.0

Q ss_pred             HHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHH
Q 043907          155 FFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMA  234 (330)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~  234 (330)
                      ++.............|.+.+++|.+..+.+ +..+...++..++++..|++.||+|||+.+..+..+.+++...+.... 
T Consensus        12 f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g-~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~-   89 (410)
T TIGR00885        12 FALWGFANDITNPMVPQFQQAFTLTAFQAA-LVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAA-   89 (410)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH-
Confidence            333333445555777888889999999999 999999999999999999999999999999999999888877654331 


Q ss_pred             HHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHH
Q 043907          235 AQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPML  309 (330)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~  309 (330)
                               ..++.+.......+.+.+.+.... ....++.|..|+++|++..++.+....+|..+++.+.+.+.
T Consensus        90 ---------~~~~~~~~l~~~~l~G~g~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~  154 (410)
T TIGR00885        90 ---------EIMNYTLFLVGLFILTAGLGFLET-AANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI  154 (410)
T ss_pred             ---------hhccHHHHHHHHHHHHhhHHHHHh-hhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     012334444444555555443333 33445568889999999999999999999999999988775

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.31  E-value=3.4e-12  Score=102.73  Aligned_cols=165  Identities=16%  Similarity=0.013  Sum_probs=129.1

Q ss_pred             HHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHH
Q 043907          147 PVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQ  226 (330)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~  226 (330)
                      .+....+....+...-+.+..-.+..-+.+|.++...+ ++.+...+..++++++.|++.||+.||+++.+|..+..++.
T Consensus        34 ~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~G-ll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av  112 (493)
T KOG1330|consen   34 TLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELG-LLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAV  112 (493)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhcc-chhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHH
Confidence            33334444444444445555555666677899999999 99999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhh
Q 043907          227 VIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFL  306 (330)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~  306 (330)
                      +..++.             .+.|...++-.+.+.|-+ ++.|+...+++|.+|..+|++.+++.+.....|+.++-....
T Consensus       113 ~~~~fs-------------~~Fwq~~l~R~~vGiGeA-s~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs  178 (493)
T KOG1330|consen  113 FASGFS-------------NHFWQVLLCRGFVGIGEA-SYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGS  178 (493)
T ss_pred             HHHHHH-------------HHHHHHHHHHHHhccchh-hhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeee
Confidence            888775             556667777777776655 666777888899999999999999999999999999888888


Q ss_pred             hHHhhcc-c-hhHHHHHHHHHH
Q 043907          307 PMLCHFK-A-GIFFFFGGLVLI  326 (330)
Q Consensus       307 ~~~~~~g-~-~~~~~~~~~~~~  326 (330)
                      .+.+..+ | +.|...+++.++
T Consensus       179 ~va~~~~~Wr~af~~~avl~vi  200 (493)
T KOG1330|consen  179 VVASLTFWWRWAFRGSAVLGVI  200 (493)
T ss_pred             eeccCccceEEEEEeehHHHHH
Confidence            8877776 4 455554444443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.30  E-value=7.8e-11  Score=101.22  Aligned_cols=129  Identities=13%  Similarity=0.020  Sum_probs=88.9

Q ss_pred             CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHH
Q 043907          177 KLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVC  256 (330)
Q Consensus       177 g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (330)
                      +.++.+.+ +..+...++..++.++.|+++||+|||+++..+..+..++.+.......... .....+.......++...
T Consensus        51 ~~~~~~~~-~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~R~  128 (479)
T PRK10077         51 SAANSLLG-FCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFT-SIGPDNTGYVPEFVIYRI  128 (479)
T ss_pred             cCChhHHH-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccc-cccccchhHHHHHHHHHH
Confidence            77777888 8899999999999999999999999999999998888777665543210000 000001111223334444


Q ss_pred             HhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhH
Q 043907          257 LCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPM  308 (330)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~  308 (330)
                      +.+.+.+ ...+....+++|.+|+++|+++.++.+....+|..+++.+...+
T Consensus       129 l~G~~~g-~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~  179 (479)
T PRK10077        129 IGGIGVG-LASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFI  179 (479)
T ss_pred             HHhhhHh-HHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444443 33345566779999999999999999988888888876655433

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.30  E-value=2.5e-11  Score=103.67  Aligned_cols=138  Identities=16%  Similarity=0.010  Sum_probs=104.1

Q ss_pred             hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHH
Q 043907          175 TLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVL  254 (330)
Q Consensus       175 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (330)
                      +++++..+.+ ...+...++..++.++.|++.||+|||+.+..+.++..++.+......           ....+..++.
T Consensus        70 ~~~~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~  137 (465)
T TIGR00894        70 NFKWSGALQG-LILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA-----------GGGIALVVFC  137 (465)
T ss_pred             CCCCCHHHhh-HHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH-----------HcCchHHHHH
Confidence            5677888888 889999999999999999999999999999988887777766654331           0122334444


Q ss_pred             HHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhc-cc-hhHHHHHHHHH
Q 043907          255 VCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHF-KA-GIFFFFGGLVL  325 (330)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-g~-~~~~~~~~~~~  325 (330)
                      ..+.+.+.+. ..|....+++|.+|+++|+++.++.+....++..+++.+.+.+.+.. +| ..|++.+++.+
T Consensus       138 r~~~G~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~  209 (465)
T TIGR00894       138 RVIQGLAQGS-VSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGC  209 (465)
T ss_pred             HHHHHHhccc-chhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHH
Confidence            4444444443 33455667789999999999999999999999999999999998884 75 45555555443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.29  E-value=1.1e-10  Score=100.31  Aligned_cols=164  Identities=16%  Similarity=0.052  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCch-hh---HH-HHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHH
Q 043907          147 PVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGEST-SL---LL-SAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQ  221 (330)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~---~~-~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~  221 (330)
                      ......+..+........+....|.+-++++.+.+. ..   .. ..+...++..++.++.|+++||+|||+++..+..+
T Consensus        17 ~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l   96 (490)
T PRK10642         17 AITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVI   96 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            344445555555555566666667666666433322 11   01 23566688899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCCCCCcchh------HHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHH
Q 043907          222 MLVSQVIIGSIMAAQLGDHGGCSEGYA------YLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNF  295 (330)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~  295 (330)
                      ++++.++.++..           +...      ......-.+.+.+.+..+ +....+++|.+|+++||...++......
T Consensus        97 ~~i~~~~~a~~~-----------~~~~~g~~a~~~l~~~R~l~G~g~g~~~-~~~~~~~~e~~p~~~Rg~~~~~~~~~~~  164 (490)
T PRK10642         97 MSISTFCIGLIP-----------SYATIGIWAPILLLLCKMAQGFSVGGEY-TGASIFVAEYSPDRKRGFMGSWLDFGSI  164 (490)
T ss_pred             HHHHHHHHHhcc-----------cHHHHHHHHHHHHHHHHHHHHhHhHhhH-HHHHHHHHHhCCCCCCcHHHHHHHHHHH
Confidence            999988887651           1111      113333444444444333 3456677899999999999998887777


Q ss_pred             HHHHHHHHhhhhHH--------hhccc-hhHHHHHH
Q 043907          296 VFTFLTAQTFLPML--------CHFKA-GIFFFFGG  322 (330)
Q Consensus       296 ~~~~~~~~~~~~~~--------~~~g~-~~~~~~~~  322 (330)
                      +|..+++.+...+.        +.+|| +.|++.+.
T Consensus       165 ~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~  200 (490)
T PRK10642        165 AGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALP  200 (490)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHH
Confidence            77777765554432        24576 45555433

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.27  E-value=1.4e-10  Score=98.03  Aligned_cols=169  Identities=11%  Similarity=-0.058  Sum_probs=103.5

Q ss_pred             HHHHHHHHHhhhhHhHHHhHHHHHHhcC---CCCch---hhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHH
Q 043907          150 AILIPFFQQVTGINIVGLYSPVLFRTLK---LGEST---SLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQML  223 (330)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~  223 (330)
                      ...+...........+....|.+.++++   .+..+   .. .......++..+++++.|+++||+|||+.+..+....+
T Consensus        26 ~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~  104 (432)
T PRK10406         26 GASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTA-GVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMC  104 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            3334444444555566666677777764   33332   22 34455566677999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHH
Q 043907          224 VSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQ  303 (330)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~  303 (330)
                      ++.+..++....     ............++-.+.+.+.+.. .+....+++|.+|+++|++..++.+.....|..+++.
T Consensus       105 ~~~~~~~~~~~~-----~~~~~~~~~~l~~~R~l~G~g~g~~-~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~  178 (432)
T PRK10406        105 FGSLVIACLPGY-----ETIGTWAPALLLLARLFQGLSVGGE-YGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALL  178 (432)
T ss_pred             HHHHHHhhcCCc-----hhHHHHHHHHHHHHHHHHHhhhhhh-HhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence            888877654100     0000011122334444444444433 3455677799999999999998877766666666665


Q ss_pred             hhhhHH--------hhccch-hHHHHHHHHH
Q 043907          304 TFLPML--------CHFKAG-IFFFFGGLVL  325 (330)
Q Consensus       304 ~~~~~~--------~~~g~~-~~~~~~~~~~  325 (330)
                      +...+.        +.+||. .|++.++..+
T Consensus       179 ~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~l  209 (432)
T PRK10406        179 VVVVLQQTLEDAELREWGWRIPFALGAVLAV  209 (432)
T ss_pred             HHHHHHHhCCHHHHhccchHHHHHHHHHHHH
Confidence            544432        245664 5555444433

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.25  E-value=3.8e-09  Score=86.61  Aligned_cols=297  Identities=13%  Similarity=0.053  Sum_probs=159.2

Q ss_pred             cchhhhhhh-hchhHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHhhcccccccc----------------------
Q 043907            2 LIASSVTRA-IGRKVSILIGGVAFLADSAYGGSAF--NIYMLIFGRLLLGVGIGFGNQ----------------------   56 (330)
Q Consensus         2 ~~~g~l~d~-~Grk~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~g~~~~----------------------   56 (330)
                      .++|+++|| .|+|+.+..+.++..+|.++.+.++  +...+.++-.+.++|.|..=+                      
T Consensus        79 i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt  158 (498)
T COG3104          79 IIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFT  158 (498)
T ss_pred             HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCcc
Confidence            578999999 5999999999999999999999884  788999999999999998766                      


Q ss_pred             -------------------ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhh----ccCCcHHHHHHHHHH------
Q 043907           57 -------------------IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKI----QRSDDHQKAQKMLQR------  107 (330)
Q Consensus        57 -------------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~----~~~~~~~~a~~~~~~------  107 (330)
                                         +.+..||...|...++-....++..+..+..-....    .+.+...+.......      
T Consensus       159 ~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (498)
T COG3104         159 LFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMIL  238 (498)
T ss_pred             EEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHH
Confidence                               566789999999888766665555544432110000    000001111100000      


Q ss_pred             ------HhcccchhHHHHHH--HHh----ccccccCccchHHhccc-ccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH
Q 043907          108 ------IRGISDVKAELNDL--IRA----SSTSKSITQPFKNIIQR-KYRPQPVMAILIPFFQQVTGINIVGLYSPVLFR  174 (330)
Q Consensus       108 ------~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (330)
                            ....+..+......  ...    .+.....+. . +-.++ ...-+.++...+.+.........+..|.....+
T Consensus       239 ~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~  316 (498)
T COG3104         239 AALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKV-F-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVN  316 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-H-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhc
Confidence                  00000000000000  000    000000000 0 10000 000011222222222222222333344433332


Q ss_pred             h--cCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcc--h-----hhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCc
Q 043907          175 T--LKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRK--V-----LFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSE  245 (330)
Q Consensus       175 ~--~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (330)
                      +  +|++-. .. +..+...+.-++.+++..++..|.+++  .     -+-++..+++.+.+++....... .+  +...
T Consensus       317 ~~~~g~~vp-~~-~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~-~~--~~~~  391 (498)
T COG3104         317 RQIFGFEVP-PA-WFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWF-GG--PSGL  391 (498)
T ss_pred             ccccceecC-HH-HHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhh-cC--CCCC
Confidence            2  232222 22 466777777788888888888885443  1     13345555555555544432111 11  1122


Q ss_pred             chhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhh
Q 043907          246 GYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFL  306 (330)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~  306 (330)
                      .+.++.+....+. .......+|+...+++...|++..+..++........+..++..+.+
T Consensus       392 ~s~~~lil~y~l~-s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~  451 (498)
T COG3104         392 VSVWWLVLSYVLQ-SFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAG  451 (498)
T ss_pred             cCHHHHHHHHHHH-HHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence            3334333333333 34456777888888889999999999999988888888888777776

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.24  E-value=2.6e-10  Score=95.21  Aligned_cols=271  Identities=13%  Similarity=0.168  Sum_probs=156.4

Q ss_pred             CcchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc------------------------
Q 043907            1 SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------   56 (330)
Q Consensus         1 ~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------   56 (330)
                      ++..|.++||+|||..+.+......+..+...+.. +|.+.    +.|+..+....                        
T Consensus        79 s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll  153 (463)
T KOG2816|consen   79 SPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLL  153 (463)
T ss_pred             HhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHH
Confidence            36789999999999999999999888888877766 33322    44444443322                        


Q ss_pred             -----------------ccCccchHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHH
Q 043907           57 -----------------IKGGWGWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAEL  118 (330)
Q Consensus        57 -----------------~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  118 (330)
                                       .....|.-.+|.+..+..++..+. ..++||+-.   ++.+ .+   ...++..         
T Consensus       154 ~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~---~~~~-~~---~~~~~~~---------  217 (463)
T KOG2816|consen  154 SGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQ---EKER-SD---ATLRELT---------  217 (463)
T ss_pred             HHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccC---cccc-cc---ccccccC---------
Confidence                             222234445667766666665544 455888742   1111 10   0000000         


Q ss_pred             HHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHH
Q 043907          119 NDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTV  197 (330)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~  197 (330)
                          ............++...+....+..+..+....+..........-..+.+. ..+++++++.+ ...+.......+
T Consensus       218 ----~~~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s-~~~~~~~~~~~i  292 (463)
T KOG2816|consen  218 ----PGSLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFS-DLLSLVSILGII  292 (463)
T ss_pred             ----CCcccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHH-HHHHHHHHHHHH
Confidence                000000001112222222122222222222222221111111110112222 35789999888 777888888888


Q ss_pred             HHHHHH-HHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccccccccccccccc
Q 043907          198 LAIISM-ILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSE  276 (330)
Q Consensus       198 ~~~~~g-~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  276 (330)
                      +..+.. .+...+|.|+....|.....+....+++.             +..|.........  .++....|...+..+.
T Consensus       293 ~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~-------------~~~w~~~~~~v~~--~~~~~~~pa~~s~~s~  357 (463)
T KOG2816|consen  293 SQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFA-------------TETWMMFAAGVVV--ALAGIVFPAIRAFASI  357 (463)
T ss_pred             HHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHh-------------ccchhhhHHHHHH--HhhcchhHHHHhHHHh
Confidence            887777 67778898998888888888888887775             3333333222222  2222334455666677


Q ss_pred             ccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhc
Q 043907          277 IFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHF  312 (330)
Q Consensus       277 ~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  312 (330)
                      ..+++++|+++++...+..+.+.++|.+.+.+...+
T Consensus       358 ~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t  393 (463)
T KOG2816|consen  358 LVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALT  393 (463)
T ss_pred             hcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            888999999999999999999999999998886543

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.21  E-value=3e-10  Score=94.38  Aligned_cols=152  Identities=13%  Similarity=0.004  Sum_probs=100.1

Q ss_pred             hhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHh-hHHHHHHHHHHHHHHHHHh
Q 043907          160 TGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVG-GMQMLVSQVIIGSIMAAQL  237 (330)
Q Consensus       160 ~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~-~~~~~~~~~~~~~~~~~~~  237 (330)
                      .+........|.++ ++.|.++.+.+ ...+...+...+..++.|+++||+|||+.++.. .....++.+.....     
T Consensus        11 ~~~~~~~~~l~~~l~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~-----   84 (375)
T TIGR00899        11 IAGALQFPTLSLFLSEEVRARPAMIG-LFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWN-----   84 (375)
T ss_pred             HHHHHHhhHHHHHHHcccCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhc-----
Confidence            34455556666665 57899999988 888888899999999999999999998876544 34434444444332     


Q ss_pred             CCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhh--hhHHHHHHHHHHHHHHHhhhhHHhhccc-
Q 043907          238 GDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAG--QSITVAVNFVFTFLTAQTFLPMLCHFKA-  314 (330)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~g~-  314 (330)
                              ++.+.......+.+... ....|....+..|..|++.|+.+  .+.......++..+++.+.+.+.+..+| 
T Consensus        85 --------~~~~~l~~~~~~~g~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~  155 (375)
T TIGR00899        85 --------RNYFLLLVLGVLLSSFA-STANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFT  155 (375)
T ss_pred             --------chHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccH
Confidence                    22232332222222222 23344445555677776666644  5777777889999999999999888886 


Q ss_pred             hhHHHHHHHHHH
Q 043907          315 GIFFFFGGLVLI  326 (330)
Q Consensus       315 ~~~~~~~~~~~~  326 (330)
                      ..|++.+.+.++
T Consensus       156 ~~f~~~~~~~~~  167 (375)
T TIGR00899       156 VMFLTAALAFVL  167 (375)
T ss_pred             HHHHHHHHHHHH
Confidence            566666655443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.21  E-value=4.9e-10  Score=96.63  Aligned_cols=122  Identities=20%  Similarity=0.097  Sum_probs=88.4

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHh
Q 043907          179 GESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLC  258 (330)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (330)
                      ++.+.+ ...+...++..++.++.|++.||+|||+.+..+.++..++.++.....     +.  .+..+....++...+.
T Consensus        54 ~~~~~~-~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~-----~~--~~~~~~~~~~~~r~l~  125 (502)
T TIGR00887        54 PSSVSA-AVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSP-----GS--SPKSVMATLCFWRFWL  125 (502)
T ss_pred             hHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcc-----Cc--ccchHHHHHHHHHHHH
Confidence            344555 788889999999999999999999999999988888888776655431     00  0001123444444555


Q ss_pred             hcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHH
Q 043907          259 SSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPML  309 (330)
Q Consensus       259 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~  309 (330)
                      +.+.+... +....+++|.+|++.|+++.++.+....+|..+++.+...+.
T Consensus       126 G~~~g~~~-~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~  175 (502)
T TIGR00887       126 GVGIGGDY-PLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVL  175 (502)
T ss_pred             HHHHhhhh-HHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55544333 355677899999999999999999999999888887776543

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.19  E-value=1.5e-10  Score=90.97  Aligned_cols=113  Identities=12%  Similarity=0.005  Sum_probs=90.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcc
Q 043907          182 TSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSG  261 (330)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (330)
                      -.+ .+.+.+++.+.+.++..|.++||+|||+++..+....++.....+..             .+. ..++..-+.++.
T Consensus        69 yaG-flGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S-------------~~F-~afv~aR~l~Gi  133 (451)
T KOG2615|consen   69 YAG-FLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS-------------RNF-AAFVLARFLGGI  133 (451)
T ss_pred             hhh-hHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH-------------HHH-HHHHHHHHhhhh
Confidence            345 78889999999999999999999999999999998888877776653             222 333332333333


Q ss_pred             cccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHh
Q 043907          262 YCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLC  310 (330)
Q Consensus       262 ~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~  310 (330)
                      +. +.-.+..++++|++++|+|+.+++..+....+|-.+||.+++++.+
T Consensus       134 ~k-gnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  134 FK-GNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             cc-CchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            33 3333567888999999999999999999999999999999999988

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.19  E-value=5.6e-10  Score=93.56  Aligned_cols=159  Identities=14%  Similarity=0.108  Sum_probs=110.4

Q ss_pred             HHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-----Ccch-hhhHhhHHHHHHHH
Q 043907          154 PFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKF-----GRKV-LFLVGGMQMLVSQV  227 (330)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~-~~~~~~~~~~~~~~  227 (330)
                      ..+.+.........-+|.++++.|++.++.+ ........  .+..++.|+++||+     |||| .+..+....+++..
T Consensus         7 l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig-~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~   83 (402)
T PRK11902          7 LGFASGLPLALTSGTLQAWMTVEGLDIQTIG-FFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIA   83 (402)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHH
Confidence            3444556667777888999999999999998 66554443  68889999999999     7775 56766777766666


Q ss_pred             HHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhh
Q 043907          228 IIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLP  307 (330)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~  307 (330)
                      .+.+..          +..+.+.......+.. .......+....++.|..|+++|+++.++......++..+++.+.+.
T Consensus        84 ~l~~~~----------~~~~~~~l~~~~~~~~-~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~  152 (402)
T PRK11902         84 AMAFCP----------PHAALWPLAGLAVLVA-FLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALW  152 (402)
T ss_pred             HHHhcC----------ccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHH
Confidence            554431          1122333333323333 33334455666778899999999999999998888999999999988


Q ss_pred             HHhhc-cc-hhHHHHHHHHHH
Q 043907          308 MLCHF-KA-GIFFFFGGLVLI  326 (330)
Q Consensus       308 ~~~~~-g~-~~~~~~~~~~~~  326 (330)
                      +.+.. || ..|++.+++.++
T Consensus       153 l~~~~~gw~~~f~i~a~~~l~  173 (402)
T PRK11902        153 LADRVLGWGNTYLLMAGLMLA  173 (402)
T ss_pred             HHhcccCHHHHHHHHHHHHHH
Confidence            88854 66 455555554443

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.19  E-value=1.9e-10  Score=100.89  Aligned_cols=161  Identities=14%  Similarity=-0.022  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHH
Q 043907          149 MAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVI  228 (330)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~  228 (330)
                      ....+..+.+...........+.+.++++++..+.+ ++.+...++..++.++.+++.||.+||+.+..+.++++++.++
T Consensus        36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G-~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll  114 (633)
T TIGR00805        36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSG-LINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFL  114 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcce-eeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHH
Confidence            333434444444344455556777788999999999 8999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHhCCC---------------------C------------C--CCc--c-hhHHHHHHHHHhhccccccccccc
Q 043907          229 IGSIMAAQLGDH---------------------G------------G--CSE--G-YAYLILVLVCLCSSGYCYSWGPLA  270 (330)
Q Consensus       229 ~~~~~~~~~~~~---------------------~------------~--~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~  270 (330)
                      +++.........                     .            .  ..+  . .....++..++.+.+.+ ...+..
T Consensus       115 ~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~-~~~~~~  193 (633)
T TIGR00805       115 LSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGAT-PIFPLG  193 (633)
T ss_pred             HhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCC-cchhcC
Confidence            776532110000                     0            0  000  1 12223344444444433 334566


Q ss_pred             ccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhh
Q 043907          271 WLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCH  311 (330)
Q Consensus       271 ~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~  311 (330)
                      ..++.|.+|+++|+...|+.+....+|..+++.+.+.+.+.
T Consensus       194 ~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~  234 (633)
T TIGR00805       194 ISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQI  234 (633)
T ss_pred             chhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence            78889999999999999999999999999999999888754

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK10133 L-fucose transporter; Provisional

Probab=99.19  E-value=6.1e-10  Score=94.03  Aligned_cols=145  Identities=13%  Similarity=0.009  Sum_probs=106.6

Q ss_pred             HHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHH
Q 043907          153 IPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSI  232 (330)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~  232 (330)
                      +.++.............|.+.+++|.++.+.+ +..+...++..++.++.|++.||+|||+.+..+..+..++.+.+...
T Consensus        33 ~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~g-l~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~  111 (438)
T PRK10133         33 SLFFLWAVANNLNDILLPQFQQAFTLTNFQAG-LIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPA  111 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334446667778988889999999999 99999999999999999999999999999999999998888765322


Q ss_pred             HHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHH
Q 043907          233 MAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPML  309 (330)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~  309 (330)
                      .          ..++.+.......+.+.+.+.... ....++.|..|+++|....++.+....+|..+++.+.+.+.
T Consensus       112 ~----------~a~~~~~ll~~r~l~G~g~g~~~~-~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        112 A----------EIMNYTLFLVGLFIIAAGLGCLET-AANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             H----------hcCCHHHHHHHHHHHHHHHHHHHh-hHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1          013344445555555555554333 33445567777777777788999999999999998876544

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.18  E-value=1.1e-10  Score=82.49  Aligned_cols=124  Identities=19%  Similarity=0.170  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccccccc
Q 043907          189 VVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGP  268 (330)
Q Consensus       189 ~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (330)
                      +...++..++.++.+++.||+|||+.+..+.....++.+.....             .+.+.......+.+.+.+. ..+
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~-~~~   70 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS-------------SNITVLIIARFLQGFGAAF-ALV   70 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh-------------ccHHHHHHHHHHHHHHHHH-HHH
Confidence            34567888999999999999999999988877777776655442             2233333333444333332 234


Q ss_pred             ccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHHHHHHH
Q 043907          269 LAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFGGLVLI  326 (330)
Q Consensus       269 ~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~  326 (330)
                      ....+..|.+|+++|++..++.+....++..+++.+.+.+.+..++ ..+++.+.+.++
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (141)
T TIGR00880        71 AGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALA  129 (141)
T ss_pred             hHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHH
Confidence            5556678999999999999999999999999999999999888775 556665554443

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.18  E-value=2.2e-10  Score=97.67  Aligned_cols=144  Identities=19%  Similarity=0.179  Sum_probs=97.3

Q ss_pred             HHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCc
Q 043907          166 GLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSE  245 (330)
Q Consensus       166 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (330)
                      ..-++.+.++.|-++...  ++.+...+...+..++.|+++|.+|||..++.+.++..++.++....             
T Consensus        64 a~~l~~I~~diG~~~~~~--w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA-------------  128 (599)
T PF06609_consen   64 ASILPYINADIGGSDNWS--WFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA-------------  128 (599)
T ss_pred             HHHHHHHHHhcCCCccch--HHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC-------------
Confidence            344566777887765444  57778889999999999999999999999999999999998887754             


Q ss_pred             chhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHHHHH
Q 043907          246 GYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFGGLV  324 (330)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~  324 (330)
                      ++....+....+.+.+.  +........++|..|.|.|..+.++.....-.....++.+...+..+.+| |.|++.+.+.
T Consensus       129 ~~~~~~iag~~l~Gvga--G~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~  206 (599)
T PF06609_consen  129 QNMNTFIAGMVLYGVGA--GVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWS  206 (599)
T ss_pred             CcHHHHHHHHHHHHHhh--HHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHH
Confidence            44444444555554443  33334455568999999998877766554434344555555554444445 4555554443


Q ss_pred             HH
Q 043907          325 LI  326 (330)
Q Consensus       325 ~~  326 (330)
                      .+
T Consensus       207 ~i  208 (599)
T PF06609_consen  207 GI  208 (599)
T ss_pred             HH
Confidence            33

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PTZ00207 hypothetical protein; Provisional

Probab=99.18  E-value=1e-09  Score=94.17  Aligned_cols=154  Identities=15%  Similarity=0.126  Sum_probs=100.2

Q ss_pred             hHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCC
Q 043907          162 INIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHG  241 (330)
Q Consensus       162 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (330)
                      .+.+..+.|.+.+++|++..+.+ ...... .......++.|++.||+|+|+++.++.+...++.+..++....      
T Consensus        43 ~y~fsv~s~~L~~~lgls~~~l~-~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~------  114 (591)
T PTZ00207         43 MYAFNLISGAMQARYNLTQRDLS-TITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQE------  114 (591)
T ss_pred             HHHHHHHHHHHHHHhCcCHHHHH-HHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcc------
Confidence            45667788888889999998888 666553 3334566788999999999999999999999998887764200      


Q ss_pred             CCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccchhHHHHH
Q 043907          242 GCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAGIFFFFG  321 (330)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  321 (330)
                      . -..+.+...+...+.+.+.+.... .....+.+.+| ++||++.|+......+|+.+.+.+...+........+++.+
T Consensus       115 ~-i~~s~~~l~l~r~l~G~G~~~~~~-~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~  191 (591)
T PTZ00207        115 V-IEGSVVRLSVYNGLMTLGCMLFDL-GAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLM  191 (591)
T ss_pred             c-ccCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            0 012333333444444333322222 22334467887 68999999999999999987665555544321124444444


Q ss_pred             HHHHH
Q 043907          322 GLVLI  326 (330)
Q Consensus       322 ~~~~~  326 (330)
                      ++.++
T Consensus       192 vl~~v  196 (591)
T PTZ00207        192 SFALV  196 (591)
T ss_pred             HHHHH
Confidence            44433

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.16  E-value=1.9e-09  Score=91.02  Aligned_cols=162  Identities=14%  Similarity=-0.082  Sum_probs=95.2

Q ss_pred             HHHHHhhhhHhHHHhHHHHHHh-cCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHH
Q 043907          154 PFFQQVTGINIVGLYSPVLFRT-LKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSI  232 (330)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~  232 (330)
                      ..+....+......+.|.++++ .|+++.+.+ ...+...+...+++++.|+++||+|||+.+..+.....+........
T Consensus        18 ~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g-~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~   96 (420)
T PRK09528         18 FFFFFFFIWSSWFSFFPIWLHDINGLSGTDTG-IIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIY   96 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Confidence            3333334445566777777755 899999999 99999999999999999999999999999877655544433222111


Q ss_pred             HHHHhCCCCCCCcchhHHH-HHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhh
Q 043907          233 MAAQLGDHGGCSEGYAYLI-LVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCH  311 (330)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~  311 (330)
                      .....      -....... .......+...... .+....+. |.. .+.++...|..+....++..++|.+.+.+.+.
T Consensus        97 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~  167 (420)
T PRK09528         97 VFAPL------LQYNILLGAIVGGIYLGFGFLAG-AGAIEAYI-ERV-SRRSGFEYGRARMWGSLGWALCAFIAGILFNI  167 (420)
T ss_pred             HHHHH------HHHHHHHHHHHHHHHhhhhhccc-hhhhhhHH-HHH-HhhccccchhhHHhhhHHHHHHHHHHHHHHhc
Confidence            00000      00001110 11111111111111 11111221 222 24567788888888999999999999988774


Q ss_pred             ccchhHHHHHHHHH
Q 043907          312 FKAGIFFFFGGLVL  325 (330)
Q Consensus       312 ~g~~~~~~~~~~~~  325 (330)
                      .....|++.+++++
T Consensus       168 ~~~~~f~~~~~~~~  181 (420)
T PRK09528        168 NPQINFWLGSGSAL  181 (420)
T ss_pred             CchHhHHHHHHHHH
Confidence            33456665554443

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.16  E-value=3e-09  Score=85.88  Aligned_cols=270  Identities=12%  Similarity=0.057  Sum_probs=155.4

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhh------hHH--HHHHHHHHhhcccccccc-----------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAF------NIY--MLIFGRLLLGVGIGFGNQ-----------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~------~~~--~~~~~r~l~G~~~g~~~~-----------------   56 (330)
                      +.+-++.||+|-|...+++....+++..+-..+.      .++  ....+..+.+.+.-....                 
T Consensus        97 f~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~  176 (480)
T KOG2563|consen   97 FAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAI  176 (480)
T ss_pred             hHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhh
Confidence            4567899999999999999999999999877662      233  555666666655544333                 


Q ss_pred             -----------------------c-----cCccchHH--HHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHH
Q 043907           57 -----------------------I-----KGGWGWRI--SLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKML  105 (330)
Q Consensus        57 -----------------------~-----~~~~~wr~--~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~  105 (330)
                                             +     .+...|-.  .|+.....+.+.+.+ .+..+|.|+.-....+      .  
T Consensus       177 A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~------~--  248 (480)
T KOG2563|consen  177 ATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQ------A--  248 (480)
T ss_pred             hhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhH------h--
Confidence                                   1     11234554  344333333332222 3334443321100000      0  


Q ss_pred             HHHhcccchhHHHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhH
Q 043907          106 QRIRGISDVKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLL  185 (330)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  185 (330)
                                      .   +.+.+-..+.++.++++    .+......+......++...+.+...+...|++...++ 
T Consensus       249 ----------------~---~~~~~f~~si~~~~~n~----~F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG-  304 (480)
T KOG2563|consen  249 ----------------A---LQDASFPKSIKSCFKNR----QFIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAG-  304 (480)
T ss_pred             ----------------h---hhcCcHHHHHHHHHcCc----cHHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccc-
Confidence                            0   00111233445555442    33333333333334445555555544555677777777 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcch-hhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccc
Q 043907          186 LSAVVAGGMGTVLAIISMILADKFGRKV-LFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCY  264 (330)
Q Consensus       186 ~~~~~~~~~~~~~~~~~g~l~d~~grr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (330)
                      +......+.+++++.+.|.+.||.+.-+ ..+.......++...+.... .        .....+..... +...+.+..
T Consensus       305 ~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t-~--------~~~~~viv~~t-~~~~g~~~~  374 (480)
T KOG2563|consen  305 YIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCT-L--------FLGDSVIVFTT-CGLLGFFGT  374 (480)
T ss_pred             hhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh-c--------cCCceEehhhh-HHHHHHhhc
Confidence            8899999999999999999999987544 33333333333322222111 0        11222222222 222334455


Q ss_pred             ccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907          265 SWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK  313 (330)
Q Consensus       265 ~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g  313 (330)
                      +..|+..-+-.|..-|..-++..|+.+..+++.+.+-.+..+...+..+
T Consensus       375 ~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~  423 (480)
T KOG2563|consen  375 GYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLG  423 (480)
T ss_pred             CCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccC
Confidence            6667777776787655667889999999999999999999998887766

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.15  E-value=1.2e-09  Score=93.72  Aligned_cols=158  Identities=15%  Similarity=0.147  Sum_probs=106.5

Q ss_pred             HHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-----Ccchh-hhHhhHHHHHHHHH
Q 043907          155 FFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKF-----GRKVL-FLVGGMQMLVSQVI  228 (330)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~~-~~~~~~~~~~~~~~  228 (330)
                      .+.+...........|.++++.|.+..+.+ .. +..+... ++.++.++++||+     |||+. +..+.+...++...
T Consensus        21 ~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig-~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~   97 (491)
T PRK11010         21 GFASGLPLALTSGTLQAWMTVENIDLKTIG-FF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAA   97 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCHHHHH-HH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHH
Confidence            334445556667778888988899888887 44 2233332 6889999999999     99886 55565556555555


Q ss_pred             HHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhH
Q 043907          229 IGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPM  308 (330)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~  308 (330)
                      +.+..          +..+.+.......+...+.+ ...+...++..|.+|+++|+++.++......++..+++.+...+
T Consensus        98 ~a~~~----------~~~~l~~l~~~~~l~~~~~a-~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l  166 (491)
T PRK11010         98 MGFLE----------PGTQLRWLAALAVVIAFCSA-SQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWL  166 (491)
T ss_pred             HHHcC----------CcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            54431          11233333333333333332 44445567778999999999999999999999999999999998


Q ss_pred             Hh-hccc-hhHHHHHHHHHH
Q 043907          309 LC-HFKA-GIFFFFGGLVLI  326 (330)
Q Consensus       309 ~~-~~g~-~~~~~~~~~~~~  326 (330)
                      .+ ..|| ..|++.+++.++
T Consensus       167 ~~~~~GWr~~f~i~a~l~ll  186 (491)
T PRK11010        167 ADRYLGWQGMYWLMAALLIP  186 (491)
T ss_pred             HhcccCHHHHHHHHHHHHHH
Confidence            88 4576 456665555443

>TIGR00896 CynX cyanate transporter

Probab=99.14  E-value=6.5e-10  Score=91.64  Aligned_cols=134  Identities=19%  Similarity=0.098  Sum_probs=99.1

Q ss_pred             HhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043907          163 NIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGG  242 (330)
Q Consensus       163 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (330)
                      .......|.+.+++|++..+.+ +..+...++..++.++.|++.||+|||+.+..+.....++.+.. ..          
T Consensus        17 ~~~~~~lp~l~~~~~~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~----------   84 (355)
T TIGR00896        17 TSVGPLLPQIRSALGMSFSVAG-LLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SA----------   84 (355)
T ss_pred             ccCcccHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hh----------
Confidence            4455678889999999999999 99999999999999999999999999999988877666555443 21          


Q ss_pred             CCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907          243 CSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK  313 (330)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g  313 (330)
                         ++.+..+....+.+.+.+... +....++.|.+| ++|+++.++.+....++..+++.+.+.+.+..+
T Consensus        85 ---~~~~~l~~~~~~~g~g~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~  150 (355)
T TIGR00896        85 ---PGTALLFAGTALIGVGIAIIN-VLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSG  150 (355)
T ss_pred             ---ccHHHHHHHHHHHHHHHHHHh-ccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence               223333333333333333222 233345567776 579999999999999999999999888877654

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.13  E-value=1.1e-09  Score=93.47  Aligned_cols=170  Identities=15%  Similarity=0.130  Sum_probs=116.9

Q ss_pred             ccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhh
Q 043907          140 QRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGG  219 (330)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~  219 (330)
                      +++..+..+..-.+..+    +......-.+-+..+..-++...+ ++.....+..++.++++|.++||++||++++.+-
T Consensus         8 r~~~Fr~lw~a~~iS~l----G~~~~~va~~wlv~~lt~S~~~va-lv~~a~~LP~~Llsl~aG~laDr~drrrili~~~   82 (524)
T PF05977_consen    8 RNRNFRRLWIAQLISNL----GDWMQTVALAWLVTQLTGSPLMVA-LVQAASTLPILLLSLFAGALADRFDRRRILILSQ   82 (524)
T ss_pred             cCchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHH
Confidence            34444444444444433    333333444444444455666666 7778888889999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHH
Q 043907          220 MQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTF  299 (330)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~  299 (330)
                      ....+....+.+....        ...+.+..++..++.+.+. ....|...+++.|+.|+++...++++.+...++...
T Consensus        83 ~~~~~~~~~L~~l~~~--------~~~~~~~Ll~~~fl~g~~~-a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~  153 (524)
T PF05977_consen   83 LLRALVALLLAVLAFF--------GLLSPWLLLILTFLLGIGS-AFFNPAWQAIIPELVPKEDLPAANALNSISFNIARI  153 (524)
T ss_pred             HHHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHh
Confidence            8877666665554322        1233444444444444443 344566677789999999999999999999999999


Q ss_pred             HHHHhhhhHHhhcc-chhHHHHHHH
Q 043907          300 LTAQTFLPMLCHFK-AGIFFFFGGL  323 (330)
Q Consensus       300 ~~~~~~~~~~~~~g-~~~~~~~~~~  323 (330)
                      ++|.+.|.++...| ...|.+-+..
T Consensus       154 iGPalgG~Lva~~G~~~~f~inals  178 (524)
T PF05977_consen  154 IGPALGGILVAFFGAAAAFLINALS  178 (524)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999888 4566554443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK09952 shikimate transporter; Provisional

Probab=99.13  E-value=1.8e-09  Score=91.51  Aligned_cols=164  Identities=16%  Similarity=0.122  Sum_probs=102.2

Q ss_pred             hHHHHHHHHHHHHhhhhHhHHHhHHHHH-Hhc--CCCCchhhHHHH-----HHHHHHHHHHHHHHHHHHHHhCcchhhhH
Q 043907          146 QPVMAILIPFFQQVTGINIVGLYSPVLF-RTL--KLGESTSLLLSA-----VVAGGMGTVLAIISMILADKFGRKVLFLV  217 (330)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--g~~~~~~~~~~~-----~~~~~~~~~~~~~~g~l~d~~grr~~~~~  217 (330)
                      +......+................|.+. +++  +.++.. + ...     ....++..+++++.|+++||+|||+.+..
T Consensus        22 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~   99 (438)
T PRK09952         22 RAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-G-TLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLML   99 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-H-HHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHH
Confidence            3444444455544444444555555444 333  455543 3 222     23456677888999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHhCCCCCCCcchh------HHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHH
Q 043907          218 GGMQMLVSQVIIGSIMAAQLGDHGGCSEGYA------YLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITV  291 (330)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~  291 (330)
                      +..+.+++.+..++.           ++...      ...+.+..+.+.+.+..+. ....++.|.+|+++|+...+..+
T Consensus       100 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~-~~~~~~~e~~p~~~rg~~~~~~~  167 (438)
T PRK09952        100 TVWMMGIATALIGLL-----------PSFSTIGWWAPVLLVTLRAIQGFAVGGEWG-GAALLAVESAPKNKKAFYSSGVQ  167 (438)
T ss_pred             HHHHHHHHHHHHhcC-----------CcHHHHHHHHHHHHHHHHHHHHhhhcccHH-HHHHHHHHhCCCCCCcHHHHHHH
Confidence            999998888877764           11111      1233334444444443333 34567789999999999998888


Q ss_pred             HHHHHHHHHHHHhhhhHHh--------hccch-hHHHHHHH
Q 043907          292 AVNFVFTFLTAQTFLPMLC--------HFKAG-IFFFFGGL  323 (330)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~--------~~g~~-~~~~~~~~  323 (330)
                      ....+|..+++.+...+..        .+||. .|++.+..
T Consensus       168 ~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~  208 (438)
T PRK09952        168 VGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVL  208 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHH
Confidence            8888888777766655442        35664 55544433

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.12  E-value=2.3e-09  Score=86.95  Aligned_cols=287  Identities=13%  Similarity=0.087  Sum_probs=167.9

Q ss_pred             chhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc--------------------------
Q 043907            3 IASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ--------------------------   56 (330)
Q Consensus         3 ~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~--------------------------   56 (330)
                      +...++|..|.|++++++.+...+...+..+.++...+-+..+..|++.+....                          
T Consensus        60 ~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l  139 (412)
T PF01770_consen   60 PVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATL  139 (412)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHH
Confidence            457899999999999999999999999999999999999999999999988665                          


Q ss_pred             --------------ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhccc--chhHHHHH
Q 043907           57 --------------IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGIS--DVKAELND  120 (330)
Q Consensus        57 --------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~  120 (330)
                                    -.+..+++...++......+.++..+++|..++-..-+++ .++..+ .++.+.++  +.+++.++
T Consensus       140 ~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r~-~~~~~~-~~~~~~~~~~~~~~~~~~  217 (412)
T PF01770_consen  140 VGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKRSLFFHRK-PPAEQD-ANESESDKMNESPESSSS  217 (412)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccceecc-Cccccc-cccccccccccccccccc
Confidence                          1133456777777776666666777788887654332222 111000 00000000  00000000


Q ss_pred             HHHhcccccc-CccchHHh---cccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhc---CCCCchhhHHHHHHHHH
Q 043907          121 LIRASSTSKS-ITQPFKNI---IQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTL---KLGESTSLLLSAVVAGG  193 (330)
Q Consensus       121 ~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~  193 (330)
                      ..++.+..+. ....++.+   +++...++.++...+.+....+++....+|...+-++.   +-...-.+ .+-....+
T Consensus       218 ~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG-~VeA~~tl  296 (412)
T PF01770_consen  218 TEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVINYVQSLWDTVPPSDNESVYNG-AVEAASTL  296 (412)
T ss_pred             cccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccch-HHHHHHHH
Confidence            0000000000 01112222   22334556666777777777888888888888877766   22222334 66777777


Q ss_pred             HHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccc
Q 043907          194 MGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLV  273 (330)
Q Consensus       194 ~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (330)
                      .+.++++..|++..++.+..-+.++......+.+++...           ..++.|.......++...+..... +...-
T Consensus       297 lgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~-----------~t~~Iwv~Y~~yIif~~~y~fliT-iA~~q  364 (412)
T PF01770_consen  297 LGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMS-----------FTGNIWVCYAGYIIFRSLYMFLIT-IASFQ  364 (412)
T ss_pred             HHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHH-----------HhhHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence            888888888888666655444443333322222222221           115566666666666666554433 33333


Q ss_pred             cccccchhhhhhhhhHHHHHHHHHHHHHHHh
Q 043907          274 PSEIFPLEIRSAGQSITVAVNFVFTFLTAQT  304 (330)
Q Consensus       274 ~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~  304 (330)
                      ++.....+.-|..+|+......+...+...+
T Consensus       365 IA~~l~~e~yaLVFGiNtf~Al~LQtilT~i  395 (412)
T PF01770_consen  365 IAKNLSEERYALVFGINTFVALVLQTILTLI  395 (412)
T ss_pred             HHHhccccceeeeeeeHHHHHHHHHHheEEE
Confidence            3455566777888888877766655554433

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR00898 2A0119 cation transport protein

Probab=99.12  E-value=3.7e-10  Score=97.69  Aligned_cols=127  Identities=17%  Similarity=0.090  Sum_probs=96.3

Q ss_pred             hHHHHHHhcCCC---CchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCC
Q 043907          168 YSPVLFRTLKLG---ESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCS  244 (330)
Q Consensus       168 ~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (330)
                      +.|.+.++++++   +.+.+ +..+...++.+++.++.|+++||+|||+.+..+.++..++.+...+.            
T Consensus       111 ~~~~i~~e~~l~c~~~~~~~-~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~------------  177 (505)
T TIGR00898       111 FSSTIVTEWDLVCEDAWKVD-LTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS------------  177 (505)
T ss_pred             ccccEEEEecceechHHHHH-HHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHc------------
Confidence            445666778887   67777 88999999999999999999999999999999888888777766553            


Q ss_pred             cchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHH
Q 043907          245 EGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPML  309 (330)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~  309 (330)
                       ++.+...+...+.+.+.+ ...+....++.|.+|+++|+.+.++......+|..+++.+...+.
T Consensus       178 -~~~~~~~~~r~l~G~~~~-~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~  240 (505)
T TIGR00898       178 -PNYTVFLVFRLLVGMGIG-GIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP  240 (505)
T ss_pred             -ccHHHHHHHHHHHHhhcc-chHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence             334444444444444433 334456677799999999999999988888788777777665543

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.11  E-value=1.5e-08  Score=81.54  Aligned_cols=164  Identities=10%  Similarity=-0.029  Sum_probs=110.2

Q ss_pred             cchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhH-HHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH-HhC
Q 043907          133 QPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYS-PVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILAD-KFG  210 (330)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~g  210 (330)
                      ..+++...++..++.+....+..+.    +......+ |+=-+.+|++..+.. .++.....+.++|....+++.. |.+
T Consensus       199 ~a~~~~~~~~~a~~f~~fl~l~t~a----~~~QD~iLEPygg~Vfgmsv~eTT-~Lta~~~~G~L~G~~~~g~~l~~~~~  273 (403)
T PF03209_consen  199 EAWRQVWASPQARRFFVFLFLGTLA----FFMQDVILEPYGGEVFGMSVGETT-RLTAFWGGGTLLGMLLAGFLLSRRLG  273 (403)
T ss_pred             HHHHHHHhCCChhHHHHHHHHHHHH----HHhhHHHcCCchhHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            4455666666666665555444432    22222222 222256799999988 8899999999999999998766 577


Q ss_pred             cchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHH
Q 043907          211 RKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSIT  290 (330)
Q Consensus       211 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~  290 (330)
                      +++....+.....++...+....          ...+.+.......+++.+.+.........+ -+..+++..|+.+|..
T Consensus       274 ~~~~a~~G~~~~~~~f~lii~a~----------~~~~~~~~~~~~~l~G~g~G~f~vgals~m-M~lt~~~~aG~~mG~W  342 (403)
T PF03209_consen  274 KKRTAALGCLLGALAFALIILAG----------PLGSPWLFRPGVFLLGLGNGLFTVGALSLM-MDLTSAGRAGLFMGAW  342 (403)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHH----------hcccchHHHHHHHHHHHhhhHHHHHHHHHH-HhCCCCcchhHHHHHH
Confidence            77777777777777766655543          123455555555555555544333333333 4888888899999999


Q ss_pred             HHHHHHHHHHHHHhhhhHHhhc
Q 043907          291 VAVNFVFTFLTAQTFLPMLCHF  312 (330)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~  312 (330)
                      ...+.+...++..+.+.+.|..
T Consensus       343 GaaQA~A~Glg~~~GG~~~D~~  364 (403)
T PF03209_consen  343 GAAQAIARGLGTFLGGALRDLV  364 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999887753

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.10  E-value=2e-09  Score=102.07  Aligned_cols=122  Identities=12%  Similarity=0.028  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccc
Q 043907          186 LSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYS  265 (330)
Q Consensus       186 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (330)
                      +..+...+...+.+++.|+++||+|||+++........+..........          ..+.+..+++.++.+.+.+ .
T Consensus        56 l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~----------~~s~~~l~~~~~l~gi~~a-~  124 (1140)
T PRK06814         56 LAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFH----------LNSVPLLFAALFLMGIHSA-L  124 (1140)
T ss_pred             HHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH----------HhhHHHHHHHHHHHHHHHH-h
Confidence            6677788889999999999999999999764322222111111111110          0334444444444444433 4


Q ss_pred             cccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccchhHH
Q 043907          266 WGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAGIFF  318 (330)
Q Consensus       266 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  318 (330)
                      ..|....++.|.+|+++|++++|+.++...++..++|.+.+.+.+..+|..++
T Consensus       125 ~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~  177 (1140)
T PRK06814        125 FGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILV  177 (1140)
T ss_pred             hchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence            45666778899999999999999999999999999999999999988865443

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.10  E-value=1.3e-10  Score=91.87  Aligned_cols=138  Identities=13%  Similarity=0.101  Sum_probs=112.4

Q ss_pred             cCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHH
Q 043907          176 LKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLV  255 (330)
Q Consensus       176 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (330)
                      .+-...+.+ +++....+.+++.+++.|.+.||+|+|..++.|..++..+.+++++.             .+.+..+++-
T Consensus       101 ~~~e~~~iG-~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg-------------~sy~~l~vAR  166 (464)
T KOG3764|consen  101 LDRENTQIG-LLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG-------------NSYPMLFVAR  166 (464)
T ss_pred             ccccccchh-HHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc-------------chhHHHHHHH
Confidence            344556777 89999999999999999999999999999999999999999999885             3344445555


Q ss_pred             HHhhcccccccccccccccccccchhh-hhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc-chhHHHHHHHHHHhh
Q 043907          256 CLCSSGYCYSWGPLAWLVPSEIFPLEI-RSAGQSITVAVNFVFTFLTAQTFLPMLCHFK-AGIFFFFGGLVLIMT  328 (330)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~e~~p~~~-r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~  328 (330)
                      .+-+.+.+... ....+++++.+|++. |++++|+.-....+|-.++|+++|.++|..| ...|.+.++++++-.
T Consensus       167 ~LQgvgsA~~~-tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~  240 (464)
T KOG3764|consen  167 SLQGVGSAFAD-TSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDG  240 (464)
T ss_pred             HHhhhhHHHHH-hhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHH
Confidence            55555544333 345567789998765 7999999999999999999999999999999 688999988887643

>TIGR00901 2A0125 AmpG-related permease

Probab=99.10  E-value=9.7e-10  Score=90.65  Aligned_cols=136  Identities=17%  Similarity=0.092  Sum_probs=92.4

Q ss_pred             hHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-----Ccchhh-hHhhHHHHHHHHHHHHHHHHHh
Q 043907          164 IVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKF-----GRKVLF-LVGGMQMLVSQVIIGSIMAAQL  237 (330)
Q Consensus       164 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~~~-~~~~~~~~~~~~~~~~~~~~~~  237 (330)
                      ......|.+.++.|++.++.+ ..... .+...+ .++.|+++||+     |||+.+ +.+....++....+.+..    
T Consensus         6 ~~~~~~~~~~~~~g~s~~~~g-~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~----   78 (356)
T TIGR00901         6 LVGNTLPYWLRSKNVSLKTIG-FFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV----   78 (356)
T ss_pred             hHHhHHHHHHHHcCCCHHHHH-HHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC----
Confidence            445567888899999999888 65444 444444 89999999998     888874 455555555544444321    


Q ss_pred             CCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907          238 GDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK  313 (330)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g  313 (330)
                            +....+.......... .......+....++.|.+|+|+|+.+.++......+|..+++.+.+.+.+..+
T Consensus        79 ------~~~~l~~l~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g  147 (356)
T TIGR00901        79 ------PSTDLPLLAGLAFLIA-FFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEF  147 (356)
T ss_pred             ------cchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence                  1122222222222222 22223344556677899999999999999999999999999999998888777

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.05  E-value=1.7e-09  Score=90.69  Aligned_cols=141  Identities=21%  Similarity=0.112  Sum_probs=115.6

Q ss_pred             hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHH
Q 043907          175 TLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVL  254 (330)
Q Consensus       175 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (330)
                      ++++++++.+ ++.+....+.+++.+..+++.||+|-|+++..+.++.++..++..+...           ...+..+++
T Consensus        67 ~~~ws~~~k~-~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~-----------~~~~~~~~~  134 (466)
T KOG2532|consen   67 EYDWSSTEKG-LIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS-----------IGFYLLLVL  134 (466)
T ss_pred             eecCCHHHHH-HHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH-----------hcchhhHHH
Confidence            3567788888 8999999999999999999999999999999999999999988888742           223344555


Q ss_pred             HHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhh-ccc-hhHHHHHHHHHHhh
Q 043907          255 VCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCH-FKA-GIFFFFGGLVLIMT  328 (330)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~-~~~~~~~~~~~~~~  328 (330)
                      -.+.+.+.+..+. ....+.++-.|+++|++..++.....++|..+.-++.|.+.+. .|| ..|++++++.++..
T Consensus       135 R~lqGl~~g~~~p-a~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~  209 (466)
T KOG2532|consen  135 RFLQGLGQGVLFP-AIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWF  209 (466)
T ss_pred             HHHhHHHHhHHHh-hhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHH
Confidence            5555555555554 4456668999999999999999999999999999999999998 786 78888888776643

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.04  E-value=4.4e-09  Score=83.10  Aligned_cols=54  Identities=20%  Similarity=0.258  Sum_probs=49.1

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~   56 (330)
                      ++.|.++||+|||+..+..+++.+++++.. ..+++..++++|++.|++......
T Consensus        87 ~~~G~laD~~Grk~~cl~~cily~~scl~k-~~~~~~~L~~GRvlgGiaTSLLfS  140 (354)
T PF05631_consen   87 TFVGSLADRYGRKKACLLFCILYSLSCLTK-HSSNYPVLLLGRVLGGIATSLLFS  140 (354)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHHH
Confidence            567999999999999999999999999754 568999999999999999998877

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.03  E-value=9.8e-09  Score=85.83  Aligned_cols=152  Identities=8%  Similarity=-0.031  Sum_probs=89.6

Q ss_pred             HhhhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHH-HHHHHHHHHHHHHHHhCcchhhh-HhhHHHHHHHHHHHHHHH
Q 043907          158 QVTGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGG-MGTVLAIISMILADKFGRKVLFL-VGGMQMLVSQVIIGSIMA  234 (330)
Q Consensus       158 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~grr~~~~-~~~~~~~~~~~~~~~~~~  234 (330)
                      ...+........|.+. +++|.++.+.+ ...+...+ ....+.+..++ .||+|||+.++ .+.....+......+.  
T Consensus        27 ~~~~~~~~~p~~~~~l~~~~~~s~~~~g-~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~--  102 (393)
T PRK15011         27 TGIAGALQTPTLSIFLTDEVHARPAMVG-FFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWN--  102 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHh--
Confidence            3344455556666655 67899999888 66555444 44555555555 99999998754 4444434444433332  


Q ss_pred             HHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhh--hhhhhHHHHHHHHHHHHHHHhhhhHHhhc
Q 043907          235 AQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIR--SAGQSITVAVNFVFTFLTAQTFLPMLCHF  312 (330)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  312 (330)
                                 ++.+.......... +......|....+..|..+++.|  +...++.+....++..++|.+.+.+.++.
T Consensus       103 -----------~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~  170 (393)
T PRK15011        103 -----------RNYFVLLFVGVFLS-SFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGF  170 (393)
T ss_pred             -----------hHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence                       22222222222222 22223444555555565555444  23346777888899999999999999988


Q ss_pred             cc-hhHHHHHHHHH
Q 043907          313 KA-GIFFFFGGLVL  325 (330)
Q Consensus       313 g~-~~~~~~~~~~~  325 (330)
                      || ..|++.+..++
T Consensus       171 gw~~~f~~~~~~~~  184 (393)
T PRK15011        171 SFTVMYLSAAVAFI  184 (393)
T ss_pred             ChHHHHHHHHHHHH
Confidence            86 45555555443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.03  E-value=1.4e-08  Score=84.56  Aligned_cols=153  Identities=12%  Similarity=0.038  Sum_probs=101.5

Q ss_pred             HHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHH-HHHHHHHH
Q 043907          153 IPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQML-VSQVIIGS  231 (330)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~-~~~~~~~~  231 (330)
                      +.++....+......+.|.+.++.|.+..+.+ ...+...+...++.++.+.++||+||+........... +..+.+..
T Consensus        11 ~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig-~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~   89 (382)
T TIGR00902        11 LGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIG-LLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSA   89 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445556677788899999999999999 88899999999999999999999998654322221111 11111111


Q ss_pred             HHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhh
Q 043907          232 IMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCH  311 (330)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~  311 (330)
                      .            .++.+...+...+...+.+. ..|....+..|  ++++|++..|.......+|..++|.+.+.+.++
T Consensus        90 ~------------~~~~~~l~~~~~l~~~~~~~-~~p~~~al~~~--~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~  154 (382)
T TIGR00902        90 G------------AHNAWLLFIAIGLFALFFSA-GMPIGDALANT--WQKQFGLDYGKVRLIGSAAFIIGSALFGGLIGM  154 (382)
T ss_pred             h------------hhhHHHHHHHHHHHHHHHcc-chhHHHHHHHH--HHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1            13334343443334434333 33454555433  357789999999999999999999999999999


Q ss_pred             ccc-hhHHHHH
Q 043907          312 FKA-GIFFFFG  321 (330)
Q Consensus       312 ~g~-~~~~~~~  321 (330)
                      .|| ..|.+.+
T Consensus       155 ~g~~~~f~~~~  165 (382)
T TIGR00902       155 FDEQNILAILT  165 (382)
T ss_pred             cChhHHHHHHH
Confidence            886 4444443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.03  E-value=7.5e-09  Score=86.66  Aligned_cols=166  Identities=11%  Similarity=-0.023  Sum_probs=98.6

Q ss_pred             HHHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHH
Q 043907          150 AILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVI  228 (330)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~  228 (330)
                      .+....+....+......+.|.+++ +.|.++.+.+ ...+...+...++.++.|+++||+|||+.+..+.....+....
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~   84 (396)
T TIGR00882         6 MFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTG-IVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAP   84 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence            3433444444555666667777764 5799999999 9999999999999999999999999999988776655544333


Q ss_pred             HHHHHHHHhCCCCCCCcchhH-HHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhh
Q 043907          229 IGSIMAAQLGDHGGCSEGYAY-LILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLP  307 (330)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~  307 (330)
                      +.......      ....... .........+.+.+.. .+....+..|..  +.++...|.......+|..++|.+.+.
T Consensus        85 ~~~~~~~~------~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~  155 (396)
T TIGR00882        85 FFIYVFGP------LLQSNILVGAIVGGLYLGFVFSAG-AGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGI  155 (396)
T ss_pred             HHHHHhhh------HHHHHHHHHHHHHHHHHHHHhccc-hhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhh
Confidence            22111000      0000111 1111122222222222 222233333322  234556677788888999999999887


Q ss_pred             HHhhccc-hhHHHHHHHHHH
Q 043907          308 MLCHFKA-GIFFFFGGLVLI  326 (330)
Q Consensus       308 ~~~~~g~-~~~~~~~~~~~~  326 (330)
                      +.+. ++ ..|++.+.+.++
T Consensus       156 l~~~-~~~~~f~~~~~~~~~  174 (396)
T TIGR00882       156 LFSI-DPQIVFWLGSGFALI  174 (396)
T ss_pred             hhcc-CchHHHHHHHHHHHH
Confidence            7654 53 556555544443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.01  E-value=6e-09  Score=99.12  Aligned_cols=130  Identities=15%  Similarity=0.126  Sum_probs=92.3

Q ss_pred             HHHHHhcCCCCch--hhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcch
Q 043907          170 PVLFRTLKLGEST--SLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGY  247 (330)
Q Consensus       170 ~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (330)
                      +.+...++.+...  .+ +..+...+...+++++.|+++||+|||++++.+..+..+..+...+....          .+
T Consensus        34 ~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~----------~~  102 (1146)
T PRK08633         34 NTLIKAYDGSEQVILTA-IVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYL----------GW  102 (1146)
T ss_pred             HHHHHHcCcccHHHHHH-HHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHH----------cc
Confidence            3344444544333  34 66778888899999999999999999999988876665555444333211          23


Q ss_pred             hHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhh
Q 043907          248 AYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCH  311 (330)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~  311 (330)
                      .+..++..++.+.+.+ ...+....++.|.+|+++|++++|+......++..+++.+.+.+.+.
T Consensus       103 ~~~l~~~r~l~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        103 FWLAFAVTFLLGAQSA-IYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             HHHHHHHHHHHHHHHH-hhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444444444444433 33445567779999999999999999999999999999999998876

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.99  E-value=7.6e-09  Score=85.66  Aligned_cols=56  Identities=23%  Similarity=0.299  Sum_probs=47.2

Q ss_pred             Ccchhhhhhhhch-hHHHHHHHHHHHHHHHHH-hhh---h-hHHHHHHHHHHhhcccccccc
Q 043907            1 SLIASSVTRAIGR-KVSILIGGVAFLADSAYG-GSA---F-NIYMLIFGRLLLGVGIGFGNQ   56 (330)
Q Consensus         1 ~~~~g~l~d~~Gr-k~~l~~~~~~~~~~~~~~-~~~---~-~~~~~~~~r~l~G~~~g~~~~   56 (330)
                      +++.|....|.|. |+.++.+.++..+++++. ++.   + ..+.++++|++.|+|.|....
T Consensus        88 ~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~  149 (488)
T KOG2325|consen   88 SLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAV  149 (488)
T ss_pred             chhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHH
Confidence            4678888899887 889999999999999988 332   3 568999999999999988766

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.96  E-value=2e-08  Score=84.51  Aligned_cols=146  Identities=12%  Similarity=0.084  Sum_probs=95.5

Q ss_pred             hhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH----HhCcchhhhHh-hHHHHHHHHHHHHHHH
Q 043907          160 TGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILAD----KFGRKVLFLVG-GMQMLVSQVIIGSIMA  234 (330)
Q Consensus       160 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~grr~~~~~~-~~~~~~~~~~~~~~~~  234 (330)
                      .++.....+.+.++++.|.+....+ .......+..++..++.|+++|    |+|||+.++.+ .....++...+.....
T Consensus        18 ~~~~l~~~~l~~yl~~lg~~~~~~~-~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~   96 (477)
T TIGR01301        18 FGWALQLSLLTPYVQELGIPHAWAS-IIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAAD   96 (477)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCch
Confidence            3455666777778899999998888 8889999999999999999999    59999998875 4444444444443211


Q ss_pred             HH--hCCCCCCCcchh---HHHHHHHHHhhcccccccccccccccccccchhhh--hhhhhHHHHHHHHHHHHHHHhhhh
Q 043907          235 AQ--LGDHGGCSEGYA---YLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIR--SAGQSITVAVNFVFTFLTAQTFLP  307 (330)
Q Consensus       235 ~~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r--~~~~g~~~~~~~~~~~~~~~~~~~  307 (330)
                      ..  ..+..+ .....   +.......+.....+....|. .++++|..|+++|  +.+.++.+....+|+.+++.+.+.
T Consensus        97 ~~~~~~~~~~-~~~~~~~i~~~~i~~~lld~~~n~~~~p~-rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~  174 (477)
T TIGR01301        97 IGHLFGDNLD-KKTKPRAIIVFVVGFWILDVANNMLQGPC-RAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAY  174 (477)
T ss_pred             hhhhcccccc-ccchhHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00  000000 00111   222223333333434333444 5677999998865  578898888899999999888876


Q ss_pred             H
Q 043907          308 M  308 (330)
Q Consensus       308 ~  308 (330)
                      .
T Consensus       175 ~  175 (477)
T TIGR01301       175 S  175 (477)
T ss_pred             H
Confidence            4

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.96  E-value=2.6e-08  Score=83.02  Aligned_cols=147  Identities=9%  Similarity=-0.042  Sum_probs=96.5

Q ss_pred             hhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhH-HHHHHHHHHHHHHHHHhC
Q 043907          160 TGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGM-QMLVSQVIIGSIMAAQLG  238 (330)
Q Consensus       160 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~-~~~~~~~~~~~~~~~~~~  238 (330)
                      .+......++|.+.++.|.+..+.+ ...+...+...++.++.|++.||+|||+...-... ...+....+..       
T Consensus        18 ~~~g~~~p~l~~~l~~~g~s~~~iG-~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-------   89 (382)
T PRK11128         18 FAYGVFLPFWSVWLKGQGYTPETIG-LLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAVAFWF-------   89 (382)
T ss_pred             HHHHHHhhhHHHHHHhcCCCHHHHH-HHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHH-------
Confidence            4456667788889999999999999 99999999999999999999999999532211111 11111111111       


Q ss_pred             CCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc-hhH
Q 043907          239 DHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA-GIF  317 (330)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~  317 (330)
                           ..++.+...+...+.+.+.+. ..|....+..+ . .++|+++.+.....+.++..++|.+.+.+.++.|| ..|
T Consensus        90 -----~~~~~~~l~i~~~l~g~~~~~-~~~~~~a~~~~-~-~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f  161 (382)
T PRK11128         90 -----GAHSFWLLFVAIGLFNLFFSP-LVPLTDALANT-W-QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAIL  161 (382)
T ss_pred             -----hcccHHHHHHHHHHHHHHHcc-cccHHHHHHHH-H-HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHH
Confidence                 113344444433333333332 33344445434 3 45688899999999999999999999999999886 445


Q ss_pred             HHHHH
Q 043907          318 FFFGG  322 (330)
Q Consensus       318 ~~~~~  322 (330)
                      ++.++
T Consensus       162 ~~~~~  166 (382)
T PRK11128        162 WILTA  166 (382)
T ss_pred             HHHHH
Confidence            54443

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.95  E-value=6e-09  Score=90.45  Aligned_cols=123  Identities=15%  Similarity=0.081  Sum_probs=98.8

Q ss_pred             hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHH
Q 043907          175 TLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVL  254 (330)
Q Consensus       175 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (330)
                      ....+..... ...++..++.++|.++.|.++||+|||++++.+..+..++.+..++.             ++.+...++
T Consensus       112 ~~c~~~~~~~-~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a-------------~~~~~~~~~  177 (521)
T KOG0255|consen  112 LVCDSSTLVA-LGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA-------------PNYWMFLIF  177 (521)
T ss_pred             eeeCcHhHHH-HHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh-------------CcHHHHHHH
Confidence            3445555566 78889999999999999999999999999999999999998777764             555555666


Q ss_pred             HHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907          255 VCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK  313 (330)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g  313 (330)
                      -++.+.+.+ +.......+..|..++++|+.+..+ ....+.++..++...+++...+.
T Consensus       178 Rfl~G~~~~-~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr  234 (521)
T KOG0255|consen  178 RFLSGFFGS-GPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDWR  234 (521)
T ss_pred             HHHHHhhcc-chhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHH
Confidence            665555544 4444667777899999999999999 88888999999999999888443

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.92  E-value=2.9e-08  Score=85.85  Aligned_cols=116  Identities=22%  Similarity=0.098  Sum_probs=92.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccc
Q 043907          184 LLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYC  263 (330)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (330)
                      + ++.+...++..+++++.|+++|++|||+.++.+.+...++.++....             .+.....+.-.+.+.+.+
T Consensus        92 s-~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a-------------~~~~~l~~GR~l~G~g~G  157 (513)
T KOG0254|consen   92 G-LLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA-------------PSWYQLIVGRILTGLGVG  157 (513)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-------------hhHHHHHHHHHHhccchh
Confidence            5 88899999999999999999999999999999999999999998876             455666666667666665


Q ss_pred             cccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhc--cch
Q 043907          264 YSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHF--KAG  315 (330)
Q Consensus       264 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--g~~  315 (330)
                      .... +...+.+|+.|++.||...+..+....+|..++ ++.+...++.  +|.
T Consensus       158 ~~~~-~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr  209 (513)
T KOG0254|consen  158 GASV-LAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWR  209 (513)
T ss_pred             hhhh-cchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHH
Confidence            4443 556788999999999999999888887666555 6666665543  454

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.90  E-value=1.5e-08  Score=86.22  Aligned_cols=167  Identities=17%  Similarity=0.189  Sum_probs=125.8

Q ss_pred             hhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHH
Q 043907          145 PQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLV  224 (330)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~  224 (330)
                      |....+.++...........+..+.+.+.++++.+..+.. ++.++......+..++.+.+.||+|.|.+.+.|.++..+
T Consensus        45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~-~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~  123 (509)
T KOG2504|consen   45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIA-WIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAAL  123 (509)
T ss_pred             eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHH-HHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHH
Confidence            3333444444443333344455566777888888888888 899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHh
Q 043907          225 SQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQT  304 (330)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~  304 (330)
                      +.+...+..            +.....+..-.+.+.+.++.+.|..... . .+.++.|+.++|+......+|.++.|.+
T Consensus       124 g~~lssF~~------------~i~~l~lt~gvi~G~G~~~~~~paiviv-~-~YF~kkR~lA~Gia~~GsG~G~~~~~~l  189 (509)
T KOG2504|consen  124 GLLLSSFAT------------SLWQLYLTFGVIGGLGLGLIYLPAVVIL-G-TYFEKKRALATGIAVSGTGVGTVVFPPL  189 (509)
T ss_pred             HHHHHHHHh------------hHHHHHHHHHHHhhccchhhhcchhhhh-h-hHhHHHHHHHHhhhhccCCcceeeHHHH
Confidence            998888762            3334444555566667777766654333 4 4555789999999999999999999999


Q ss_pred             hhhHHhhccc-hhHHHHHHHHHH
Q 043907          305 FLPMLCHFKA-GIFFFFGGLVLI  326 (330)
Q Consensus       305 ~~~~~~~~g~-~~~~~~~~~~~~  326 (330)
                      ...+.+..|| +.+++++.+.+-
T Consensus       190 ~~~l~~~~G~r~~~l~~~~~~l~  212 (509)
T KOG2504|consen  190 LKYLLSKYGWRGALLIFGGISLN  212 (509)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHH
Confidence            9999999995 677777666543

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.88  E-value=9.5e-09  Score=84.75  Aligned_cols=153  Identities=14%  Similarity=0.118  Sum_probs=116.8

Q ss_pred             hhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCC
Q 043907          161 GINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDH  240 (330)
Q Consensus       161 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (330)
                      +.....+++--.+++.+-.+..-+ ......-.+.++.-++.+++.+|+|+-+++..+.....+=.+.+...        
T Consensus       386 g~~lv~tFLfWHled~~~~~~LfG-v~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L--------  456 (618)
T KOG3762|consen  386 GVGLVFTFLFWHLEDLGGIKTLFG-VVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL--------  456 (618)
T ss_pred             HHHHHHHHHHHHHhhcCCcceeee-ehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh--------
Confidence            334455555555678777766666 77788888999999999999999999999988877777666665554        


Q ss_pred             CCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHH-HHHHHHHHHHhhhhHHhhcc-chhHH
Q 043907          241 GGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAV-NFVFTFLTAQTFLPMLCHFK-AGIFF  318 (330)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g-~~~~~  318 (330)
                           ++.|..+..-.+-+...+..|..+ ..|++...|++.|.++.++.... ..+|-.+++.++|.+.+.++ ..+|.
T Consensus       457 -----~n~W~vLPieilqgit~aliWaa~-~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~  530 (618)
T KOG3762|consen  457 -----QNPWMVLPIEILQGITHALIWAAI-ISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFR  530 (618)
T ss_pred             -----cCchheeeHHHHHHHHHHHHHHHH-HHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHH
Confidence                 667777777777777777777744 56768999999999999988755 45666788999999988888 56777


Q ss_pred             HHHHHHHHhh
Q 043907          319 FFGGLVLIMT  328 (330)
Q Consensus       319 ~~~~~~~~~~  328 (330)
                      ++++.|++..
T Consensus       531 ~~giAcl~~l  540 (618)
T KOG3762|consen  531 IFGIACLVTL  540 (618)
T ss_pred             HHHHHHHHHH
Confidence            7777666543

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.87  E-value=3.4e-10  Score=96.89  Aligned_cols=171  Identities=13%  Similarity=0.107  Sum_probs=0.0

Q ss_pred             ccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCchhhHHHH-HHHHHHHHHHHHHHHHHHHHhC--cchhh
Q 043907          140 QRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSA-VVAGGMGTVLAIISMILADKFG--RKVLF  215 (330)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~g--rr~~~  215 (330)
                      ++-.+++.++...+...........+.++.|.++| +++.++.++. .+. .....+..+|.+++|.+.+|++  .|...
T Consensus       299 ~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~-~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~  377 (539)
T PF03137_consen  299 KRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQAS-LLTGIVSIPGAALGILLGGYIVKKFKLSARGAA  377 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-HHHhhhhcchhheehheEEEEEEEecCcHHHHH
Confidence            35566678888888887777778888899999996 5888888887 444 4444577788999999999974  44444


Q ss_pred             hHhhHHHHHHHHHHHHHHHH------------Hh------CC--------------------CCCCCc---chhHHHHHH
Q 043907          216 LVGGMQMLVSQVIIGSIMAA------------QL------GD--------------------HGGCSE---GYAYLILVL  254 (330)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~------------~~------~~--------------------~~~~~~---~~~~~~~~~  254 (330)
                      ....+...+..+.....+..            .+      ..                    .+..+.   ......++.
T Consensus       378 ~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~  457 (539)
T PF03137_consen  378 KFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLIL  457 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHH
Confidence            44444443333331111100            00      00                    000011   112223333


Q ss_pred             HHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHH-HHHHHHhhhhHHhhc
Q 043907          255 VCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVF-TFLTAQTFLPMLCHF  312 (330)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~  312 (330)
                      .++.....+....|..... -..+|+++|+.+.|+.....++. ..-+|.++|.++|..
T Consensus       458 ~~~~~~~~~~~~~p~~~i~-LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~t  515 (539)
T PF03137_consen  458 LFILSFFTFMSQVPSTLIT-LRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDST  515 (539)
T ss_dssp             -----------------------------------------------------------
T ss_pred             HHHHHHHHHhcccchheee-eccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence            3333333344444443333 48899999999999988775554 467899999999875

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.85  E-value=4.3e-08  Score=80.63  Aligned_cols=147  Identities=14%  Similarity=0.107  Sum_probs=103.5

Q ss_pred             hhhHhHHHhHHHHH-Hhc----CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH-hCcchhhhHhhHHHHHHHHHHHHHH
Q 043907          160 TGINIVGLYSPVLF-RTL----KLGESTSLLLSAVVAGGMGTVLAIISMILADK-FGRKVLFLVGGMQMLVSQVIIGSIM  233 (330)
Q Consensus       160 ~~~~~~~~~~~~~~-~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~  233 (330)
                      .++|.+...+..|+ .+.    |++++++. .....+....-+..+++|+++|| +|+|+.+..+.+++.++.++++.. 
T Consensus        35 FsyYGmraiL~~Yl~~~~~~gLg~~~~~A~-~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~-  112 (498)
T COG3104          35 FSYYGMRAILILYLYYQLGDGLGFDETHAT-GLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAIS-  112 (498)
T ss_pred             HhhhhhHHHHHHHHHHhccccCCcChHhhH-HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcc-
Confidence            34455544444444 334    48888888 66677777777888999999999 599999999999999999998763 


Q ss_pred             HHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchh--hhhhhhhHHHHHHHHHHHHHHHhhhhHHhh
Q 043907          234 AAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLE--IRSAGQSITVAVNFVFTFLTAQTFLPMLCH  311 (330)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~  311 (330)
                                +........+.......+.+ ..-|....++.|.+|++  .|-.++++.++..++|+++.|.+.+++.++
T Consensus       113 ----------~~~~~~gl~i~L~~I~iG~G-l~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~  181 (498)
T COG3104         113 ----------SVSGPGGLYIGLALIIVGTG-LFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAIN  181 (498)
T ss_pred             ----------ccccccHHHHHHHHHHhccc-cccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHh
Confidence                      10122223333333334433 33455566778888743  377788889999999999999999999999


Q ss_pred             ccch-hHHH
Q 043907          312 FKAG-IFFF  319 (330)
Q Consensus       312 ~g~~-~~~~  319 (330)
                      .||. .|-.
T Consensus       182 ~g~~~gF~~  190 (498)
T COG3104         182 YGWHVGFGL  190 (498)
T ss_pred             hCHHHHHHH
Confidence            9954 4433

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.85  E-value=9.8e-08  Score=72.95  Aligned_cols=142  Identities=17%  Similarity=0.159  Sum_probs=102.1

Q ss_pred             hhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCC
Q 043907          160 TGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGD  239 (330)
Q Consensus       160 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (330)
                      ...+.+..|.|++-+++|++.++.. .+.+...++..+| ++.|.+.|++|++.++.++.....++...+......    
T Consensus        16 Gt~Y~Fs~yS~~Lk~~l~~sq~~l~-~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~----   89 (250)
T PF06813_consen   16 GTTYTFSAYSPQLKSRLGYSQSQLN-TLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSG----   89 (250)
T ss_pred             CcccchhhhhHHHHHHhCCCHHHHH-HHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhC----
Confidence            4557888999999999999999999 8888888888764 888999999999999999999999998887665411    


Q ss_pred             CCCCCcchhHHHHHHHHHhhcccccccc-cccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhc
Q 043907          240 HGGCSEGYAYLILVLVCLCSSGYCYSWG-PLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHF  312 (330)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  312 (330)
                        ..+..+.|......++.  +.+..+. ........+.+| ++||++.|+.-....+++.+...+...+.+..
T Consensus        90 --~i~~~~~~~~~~~~~l~--~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~  158 (250)
T PF06813_consen   90 --RIPSLPVWLMCLFLFLG--GNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDD  158 (250)
T ss_pred             --ccCccchHHHHHHHHHH--cccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCC
Confidence              11112233333333322  3332322 222222347888 57999999999999999999888877766553

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.82  E-value=1.1e-07  Score=79.64  Aligned_cols=108  Identities=20%  Similarity=0.068  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcch---hHHHHHHHHHhhcccccccccc
Q 043907          193 GMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGY---AYLILVLVCLCSSGYCYSWGPL  269 (330)
Q Consensus       193 ~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  269 (330)
                      +...++.++.|+++||+|||+.+..+..+..++.+........        ....   .........+.+.+.+.. .+.
T Consensus        46 ~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~r~l~G~~~~~~-~~~  116 (394)
T TIGR00883        46 LARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSY--------ATIGIWAPILLLLARLIQGFSLGGE-WGG  116 (394)
T ss_pred             HHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCCh--------hhhHHHHHHHHHHHHHHHHhhcccc-ccc
Confidence            3445788999999999999999999988888887776653100        0000   012233333333333322 234


Q ss_pred             cccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHH
Q 043907          270 AWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPML  309 (330)
Q Consensus       270 ~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~  309 (330)
                      ...++.|.+|+++|++..++.+....+|..+++.+...+.
T Consensus       117 ~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~  156 (394)
T TIGR00883       117 AALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLS  156 (394)
T ss_pred             cHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567789999999999999999888888888888766553

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.81  E-value=2e-08  Score=81.33  Aligned_cols=114  Identities=18%  Similarity=0.095  Sum_probs=78.6

Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHH
Q 043907          178 LGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCL  257 (330)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (330)
                      +++...+ .+.....++.+.|+++.|++.||+|||+++...++++.++.++.+...      ....+..........-..
T Consensus        81 ~ps~i~~-~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~------~~~~~~~~m~~L~~~R~~  153 (538)
T KOG0252|consen   81 YPSGVLA-LVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSV------GTTSPLGVMMTLCFFRFL  153 (538)
T ss_pred             CCchHHH-HHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCC------CCCCCcchhhHHHHHHHH
Confidence            4455555 788899999999999999999999999999999999998887555421      001111223333333444


Q ss_pred             hhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHH
Q 043907          258 CSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTF  299 (330)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~  299 (330)
                      .+.+.+.-+ |+..+.++|....+.||+-.+...+.+..|..
T Consensus       154 LGiGIGGDY-PlSAtI~SE~an~~~RGa~iaavFa~Qg~Gil  194 (538)
T KOG0252|consen  154 LGIGIGGDY-PLSATIMSESANKKTRGAFIAAVFAMQGFGIL  194 (538)
T ss_pred             hhccccCCC-cchHHHhhhhhhhccccceeEEEEEecchhHh
Confidence            444444333 57778889999999999988776555444433

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.81  E-value=3e-07  Score=73.61  Aligned_cols=137  Identities=15%  Similarity=0.048  Sum_probs=105.4

Q ss_pred             hHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCC
Q 043907          162 INIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHG  241 (330)
Q Consensus       162 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (330)
                      ........|.+.+.++.+..+++ .+......+..++++..+++.+|+|+|+-++.+..++++++.++.-..        
T Consensus        29 ~~l~diLip~l~~~f~ls~~~a~-liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa--------   99 (422)
T COG0738          29 TCLNDILIPHLKEVFDLTYFEAS-LIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAA--------   99 (422)
T ss_pred             hhcchhhHHHHHHHhCccHHHHH-HHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhh--------
Confidence            34445567888888999999999 999999999999999999999999999999999999999998876432        


Q ss_pred             CCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHh
Q 043907          242 GCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLC  310 (330)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~  310 (330)
                        ........+...+....+.+. .......+++.+.|++....-+.+.+.++.+|+.++|.+.+.+..
T Consensus       100 --~~~~y~~FL~~lFila~Gi~~-LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil  165 (422)
T COG0738         100 --SSKSYGFFLVALFILASGIGL-LETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLIL  165 (422)
T ss_pred             --hhhhHHHHHHHHHHHHhhhHH-HHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence              112222233333333333321 223456677788888888888999999999999999999999887

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.79  E-value=2.1e-08  Score=70.63  Aligned_cols=85  Identities=31%  Similarity=0.412  Sum_probs=68.7

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ-------------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~-------------------------   56 (330)
                      ++.|++.||+|||+.+..+.....++.+.....++++.+.+.+++.|++.+...+                         
T Consensus        16 ~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (141)
T TIGR00880        16 PLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAG   95 (141)
T ss_pred             hhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHh
Confidence            5688999999999999999999999999888889999999999999998887655                         


Q ss_pred             --------------ccCccchHHHHHhhhHHHHHHHHHHh-hcCC
Q 043907           57 --------------IKGGWGWRISLAMAAAPASILTIGAI-FLPE   86 (330)
Q Consensus        57 --------------~~~~~~wr~~~~~~~~~~~~~~~~~~-~~pe   86 (330)
                                    +.+..+|++.+.+.+...++..+... ..||
T Consensus        96 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        96 IALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             HHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence                          44556899988887766665554433 3444

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.78  E-value=1.7e-07  Score=81.33  Aligned_cols=86  Identities=12%  Similarity=0.080  Sum_probs=62.3

Q ss_pred             cccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCchhhHHHH-HHHHHHHHHHHHHHHHHHHHhC--cchh
Q 043907          139 IQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSA-VVAGGMGTVLAIISMILADKFG--RKVL  214 (330)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~g--rr~~  214 (330)
                      .++...+++++...+........+..+.+++|-|++ ++|.+...+. .+. .+..-+..+|.+++|++..|+.  .|..
T Consensus       385 ~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An-~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~  463 (735)
T KOG3626|consen  385 IKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLAN-ILTGSIGVPAAAVGIFLGGLIIKKFKLSARGA  463 (735)
T ss_pred             HHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHH-HHhhhhhhhhhhhhhhccceeeeeecccHHHH
Confidence            345556688888888888888888999999999995 6899998888 444 5555566788899999999875  3444


Q ss_pred             hhHhhHHHHHH
Q 043907          215 FLVGGMQMLVS  225 (330)
Q Consensus       215 ~~~~~~~~~~~  225 (330)
                      ..+.++...+.
T Consensus       464 a~~~~~~~~l~  474 (735)
T KOG3626|consen  464 AKFVIVCSVLS  474 (735)
T ss_pred             HHHHHHHHHHH
Confidence            44444333333

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.75  E-value=1.6e-07  Score=78.59  Aligned_cols=167  Identities=12%  Similarity=0.021  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHH--HHHHHHHHHHHHHHHH-HHHHHhCcchhhhHhhHHH-HH
Q 043907          149 MAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLS--AVVAGGMGTVLAIISM-ILADKFGRKVLFLVGGMQM-LV  224 (330)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~g-~l~d~~grr~~~~~~~~~~-~~  224 (330)
                      ..+...++.+...+.....+.|.++++.|.+.++.+ ..  .....+...+..++.. +..||+|||+..++...+. ..
T Consensus         4 ~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iG-l~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~   82 (390)
T TIGR02718         4 ITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALA-FLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSA   82 (390)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHH
Confidence            334455566667777888899999999999999998 64  3455777777777774 4788899998875554332 21


Q ss_pred             HHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHh
Q 043907          225 SQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQT  304 (330)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~  304 (330)
                      ....+....         ............... .........+....+..|..+++.++...+.......+|..+++..
T Consensus        83 ~~~~~~~~~---------~~~~~~~~~~~~~~~-~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~  152 (390)
T TIGR02718        83 CLASLALVG---------PDVAGAGWAVGLLAC-ASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAG  152 (390)
T ss_pred             HHHHHHcCC---------cchhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            222222110         011111122222221 2122223333444455677777777777777777667888888888


Q ss_pred             hhhHHhhccc-hhHHHHHHHHHH
Q 043907          305 FLPMLCHFKA-GIFFFFGGLVLI  326 (330)
Q Consensus       305 ~~~~~~~~g~-~~~~~~~~~~~~  326 (330)
                      .+.+.++.|| ..|++.+++.++
T Consensus       153 ~~~l~~~~gw~~~f~~~a~l~~~  175 (390)
T TIGR02718       153 TLVLFGKFGQRPAFLLVACVPLA  175 (390)
T ss_pred             HHHHHHHhCHHHHHHHHHHHHHH
Confidence            8888998886 466666655443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.71  E-value=2e-07  Score=78.80  Aligned_cols=140  Identities=14%  Similarity=0.004  Sum_probs=103.1

Q ss_pred             HhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHH
Q 043907          174 RTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILV  253 (330)
Q Consensus       174 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (330)
                      ++.+...++.+ ...+++.++.+++.+.++.+.||++-.+.+....+..++..++-...             ++.+..++
T Consensus        74 edl~~~~~~l~-~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~-------------~s~~~~ia  139 (495)
T KOG2533|consen   74 EDLKLVGNQLG-VLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV-------------HSFPGLIA  139 (495)
T ss_pred             cccchhhhhhh-hHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH-------------hhhHHHHH
Confidence            45667777888 89999999999999999999999995555554444444333332222             45555666


Q ss_pred             HHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHh------hccc-hhHHHHHHHHHH
Q 043907          254 LVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLC------HFKA-GIFFFFGGLVLI  326 (330)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~g~-~~~~~~~~~~~~  326 (330)
                      .-++.+..-+.++++. ..++...+.+++|++.+|+.+....+|+++++.+...+.+      ..|| +.|++-+++.++
T Consensus       140 lr~llGl~es~~wP~~-~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~  218 (495)
T KOG2533|consen  140 LRFLLGLFESGGWPGV-VAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLV  218 (495)
T ss_pred             HHHHHHHHhcccchHH-HHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHH
Confidence            6666776666666654 5566899999999999999999999999999999888643      2345 677777777666


Q ss_pred             hh
Q 043907          327 MT  328 (330)
Q Consensus       327 ~~  328 (330)
                      ..
T Consensus       219 ~g  220 (495)
T KOG2533|consen  219 LG  220 (495)
T ss_pred             HH
Confidence            54

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.69  E-value=5.3e-07  Score=71.54  Aligned_cols=149  Identities=17%  Similarity=0.094  Sum_probs=93.4

Q ss_pred             HhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043907          163 NIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGG  242 (330)
Q Consensus       163 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (330)
                      .....|.-..++++|+++.+.. .+.........+...+.|.++||+|||+..+...++..++++.--            
T Consensus        51 WLQGpY~Y~LY~~yg~~~~qIa-~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~------------  117 (354)
T PF05631_consen   51 WLQGPYLYALYESYGFSEHQIA-ILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKH------------  117 (354)
T ss_pred             HhhcchhHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh------------
Confidence            4444555556678999999999 888888899999999999999999999998888888877775422            


Q ss_pred             CCcchhHHHHHHHHHhhcccccccccccccccccc----cchhhhhhhhhHHH-HHHHHHHHHHHHhhhhHHhhcc---c
Q 043907          243 CSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEI----FPLEIRSAGQSITV-AVNFVFTFLTAQTFLPMLCHFK---A  314 (330)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~----~p~~~r~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g---~  314 (330)
                        .++....++.-.+.+...+.-.+..-.-++.|.    +|++..+...+... ..+.+.++....+...+.+..+   -
T Consensus       118 --~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~v  195 (354)
T PF05631_consen  118 --SSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPV  195 (354)
T ss_pred             --ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCc
Confidence              144444555555555554444443322333454    45555555555444 2233444555555556666554   2


Q ss_pred             hhHHHHHHHHHH
Q 043907          315 GIFFFFGGLVLI  326 (330)
Q Consensus       315 ~~~~~~~~~~~~  326 (330)
                      .+|..-..+.++
T Consensus       196 aPF~~a~~~l~~  207 (354)
T PF05631_consen  196 APFDAAIVLLAV  207 (354)
T ss_pred             chHHHHHHHHHH
Confidence            455544444433

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.66  E-value=3.1e-07  Score=78.13  Aligned_cols=139  Identities=17%  Similarity=0.180  Sum_probs=88.1

Q ss_pred             HhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH----hCcchh-hhHhhHHHHHHHHHHHHHHHHH
Q 043907          163 NIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTVLAIISMILADK----FGRKVL-FLVGGMQMLVSQVIIGSIMAAQ  236 (330)
Q Consensus       163 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~~-~~~~~~~~~~~~~~~~~~~~~~  236 (330)
                      .....|.+.++ ++.|.++.+.+ ...+...+...+..++.|+++||    +||||. ++.+....+++.+.+....   
T Consensus        16 ~~~~~~l~~~~~~~~g~s~~~~g-~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~---   91 (437)
T TIGR00792        16 AIVSTYLLFFYTDVLGLSAAFVG-TLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTP---   91 (437)
T ss_pred             HHHHHHHHHHHHHccCCCHHHHH-HHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCC---
Confidence            34445555555 56899999999 99999999999999999999998    577554 5556666666555544320   


Q ss_pred             hCCCCCCCcchhHHHHHHHHHhhccccccccccccccccccc-chhhhhhhhhHHHHHHHHHHHHHHHhhhhHHh
Q 043907          237 LGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIF-PLEIRSAGQSITVAVNFVFTFLTAQTFLPMLC  310 (330)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~  310 (330)
                         + ...............+...+++....|. .++..|.. ++++|++..++.+....+++.+++.+.+.+..
T Consensus        92 ---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~  161 (437)
T TIGR00792        92 ---D-FSATGKLVYAYITYILLGLFYSFVNIPY-WSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVS  161 (437)
T ss_pred             ---C-CCcchHHHHHHHHHHHHHHHHHhhcccH-hhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               0 0000112222333333333333322222 34456776 57889999999888888888877777666553

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.65  E-value=3.9e-07  Score=76.22  Aligned_cols=113  Identities=20%  Similarity=0.183  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccc
Q 043907          186 LSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYS  265 (330)
Q Consensus       186 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (330)
                      ...+...+++++|+++.++++||+|||..+.++.++..++.+........          +.....+..-.+.+...+..
T Consensus        64 ~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~----------~~~e~li~GR~i~Gl~~gl~  133 (485)
T KOG0569|consen   64 LIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSA----------PSFEMLILGRLIVGLACGLS  133 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHHHHHhHHH
Confidence            45677889999999999999999999999998888888877777665421          34444555555555454444


Q ss_pred             cccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhh-hhHH
Q 043907          266 WGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTF-LPML  309 (330)
Q Consensus       266 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~-~~~~  309 (330)
                      .. ....++.|..|++.||....+......+|..++..+. +.+.
T Consensus       134 ~~-~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~il  177 (485)
T KOG0569|consen  134 TG-LVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLL  177 (485)
T ss_pred             HH-HHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhc
Confidence            44 3355778999999999999888888888888874444 4444

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=98.64  E-value=1.1e-05  Score=67.16  Aligned_cols=134  Identities=16%  Similarity=0.061  Sum_probs=86.0

Q ss_pred             HHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCc
Q 043907          166 GLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSE  245 (330)
Q Consensus       166 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (330)
                      ...+..|.+..|+++...+ ..-....+.++.+.++..++.+|+|..+.-..+......+..+.......  ..+ +.+.
T Consensus       278 ~~lmt~yl~~~G~s~~~ig-i~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~--~~~-~~~~  353 (432)
T PF06963_consen  278 GGLMTAYLKSQGYSPSVIG-IFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWA--PGS-PFSS  353 (432)
T ss_pred             cHHHHHHHHHCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhc--CCC-Cchh
Confidence            3445566666799999998 88899999999999999999999999888777766555444443332211  010 0011


Q ss_pred             chhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHh
Q 043907          246 GYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQT  304 (330)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~  304 (330)
                      .+....+.....-..|.- ++-.....++.|..|+++||+..|+-+..+++...+.-.+
T Consensus       354 ~s~~~l~~gi~~SR~GLW-~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~  411 (432)
T PF06963_consen  354 ISAYLLLGGIALSRIGLW-SFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVL  411 (432)
T ss_pred             hHHHHHHHHHHHHHHHHH-hhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            223333333333333321 2222334455899999999999999888888776654333

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.62  E-value=6.2e-07  Score=73.52  Aligned_cols=161  Identities=10%  Similarity=-0.037  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHhhhhHhHHHhHHHHHHh-cCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHH-
Q 043907          147 PVMAILIPFFQQVTGINIVGLYSPVLFRT-LKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLV-  224 (330)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~-  224 (330)
                      .++......+..+........+.|.++++ .|++.++.+ .+.+...+..++.+++.|.++||+|.||-++.......+ 
T Consensus         8 ~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG-~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l   86 (412)
T PF01306_consen    8 NYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIG-IIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLL   86 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHH-HHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHH
Confidence            33334444444445556666777888864 899999999 999999999999999999999999977765544333222 


Q ss_pred             -HHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccccccc---ccccccccccchhhhhhhhhHHHHHHHHHHHH
Q 043907          225 -SQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGP---LAWLVPSEIFPLEIRSAGQSITVAVNFVFTFL  300 (330)
Q Consensus       225 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~  300 (330)
                       +........+..        +.+.+..   ..+.+...+..+.+   +.-++ +|... +..+--.|=..+.+.+|.++
T Consensus        87 ~~pff~~v~~pll--------~~n~~lg---~iig~i~l~~~f~~~~~~~Ea~-~er~s-r~~~feYG~~R~wGSig~ai  153 (412)
T PF01306_consen   87 FGPFFIYVFGPLL--------QSNFWLG---AIIGGIYLGLVFNAGVPLSEAY-AERVS-RRNGFEYGRARMWGSIGFAI  153 (412)
T ss_dssp             CHHHHHHTHHHHH--------HTT-HHH---HHHTTTTTTTTTTTHHHHHHHH-HHHHH-HHHSS-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH--------HHHHHHH---HHHHHHHHHHHHcccchHHHHH-HHHHH-HHhcCCcchHHHHhhHHHHH
Confidence             211111111000        0112211   11112222333332   32333 23333 33455667778889999999


Q ss_pred             HHHhhhhHHhhccchhHHHHH
Q 043907          301 TAQTFLPMLCHFKAGIFFFFG  321 (330)
Q Consensus       301 ~~~~~~~~~~~~g~~~~~~~~  321 (330)
                      ++.+.|.+.+..+...+|+..
T Consensus       154 ~s~~~G~L~~i~p~~~fwi~s  174 (412)
T PF01306_consen  154 ASLLAGILFNINPNIIFWIAS  174 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhheeeeeCccHHHHHHH
Confidence            999999998866666666544

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00889 2A0110 nucleoside transporter

Probab=98.56  E-value=2e-06  Score=72.46  Aligned_cols=70  Identities=13%  Similarity=0.033  Sum_probs=51.8

Q ss_pred             hhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCc-chhhhHhhHHHHHHHHHHH
Q 043907          160 TGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGR-KVLFLVGGMQMLVSQVIIG  230 (330)
Q Consensus       160 ~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr-r~~~~~~~~~~~~~~~~~~  230 (330)
                      ..+.....+++.++ ++.|++..+.+ +..+...++.++++++.|.++||+|| |+.+..+.....+......
T Consensus        16 ~~~~~~~~~l~~~l~~~~g~s~~~iG-l~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~   87 (418)
T TIGR00889        16 FIWGSWLVTLGSYMSKTLHFSGAEIG-WVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAA   87 (418)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            33444445555555 56899999999 99999999999999999999999965 6666666655555444443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK09669 putative symporter YagG; Provisional

Probab=98.55  E-value=9.5e-07  Score=75.23  Aligned_cols=141  Identities=19%  Similarity=0.137  Sum_probs=87.9

Q ss_pred             hHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH----hCcchh-hhHhhHHHHHHHHHHHHHHHH
Q 043907          162 INIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTVLAIISMILADK----FGRKVL-FLVGGMQMLVSQVIIGSIMAA  235 (330)
Q Consensus       162 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~~-~~~~~~~~~~~~~~~~~~~~~  235 (330)
                      ......|++.++ +..|++....+ .+.++.-+...+..++.|.++||    +|||+. ++.+.+..++...++...   
T Consensus        25 ~~~~~~~l~~~~t~~~gls~~~~g-~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~---  100 (444)
T PRK09669         25 WQTVMLFLAYFYTDVFGLSAAIMG-TMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYT---  100 (444)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhC---
Confidence            344455666555 56899999999 99999999999999999999999    677555 445555555554433221   


Q ss_pred             HhCCCCCCCcchhHHHHHHHHHhhccccccccccccccccccc-chhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhh
Q 043907          236 QLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIF-PLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCH  311 (330)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~  311 (330)
                        ++. + .........+...++..++.....|. .++.+|.. ++++|++..+.-.....+|+.+++.+..++...
T Consensus       101 --p~~-~-~~~~~~~~~~~~~l~~~~~t~~~ip~-~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~  172 (444)
T PRK09669        101 --PDF-G-ATGKIIYACVTYILLSLVYTAINVPY-CAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDI  172 (444)
T ss_pred             --CCC-C-cchHHHHHHHHHHHHHHHHHhhcchH-HHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              000 0 01112233333333333443322232 35557776 567899888888888888888877766555443

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.46  E-value=1.3e-05  Score=65.49  Aligned_cols=53  Identities=17%  Similarity=0.182  Sum_probs=41.4

Q ss_pred             hhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc
Q 043907            4 ASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ   56 (330)
Q Consensus         4 ~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~   56 (330)
                      +.+..+|..-+.=...+..++.++.++.++++|.+.-+++-.+.+++.|..+.
T Consensus        79 aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~  131 (402)
T PF02487_consen   79 APFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEV  131 (402)
T ss_pred             hHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHH
Confidence            44556666655556677778888999999999999888888888888887666

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.45  E-value=5.1e-06  Score=71.36  Aligned_cols=141  Identities=17%  Similarity=0.114  Sum_probs=87.0

Q ss_pred             hhhhHhHHHhHHHHHH-hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH----HhCcchh-hhHhhHHHHHHHHHHHHH
Q 043907          159 VTGINIVGLYSPVLFR-TLKLGESTSLLLSAVVAGGMGTVLAIISMILAD----KFGRKVL-FLVGGMQMLVSQVIIGSI  232 (330)
Q Consensus       159 ~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~grr~~-~~~~~~~~~~~~~~~~~~  232 (330)
                      .........|++.+++ ..|+++...+ .+..+.-+...+..++.|.++|    |+|||+. ++.+.+..+++..++...
T Consensus        19 ~~~~~~~~~~l~~yyt~v~Gls~~~vg-~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~   97 (473)
T PRK10429         19 DFAIGIVYMYLMYYYTDVVGLSVGLVG-TLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSA   97 (473)
T ss_pred             hHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcC
Confidence            3444556667766664 4699999999 8889999999999999999999    4588554 455555555554443211


Q ss_pred             HHHHhCCCCCCCcc-hhHHHHHHHHHhhccccccccccccccccccc-chhhhhhhhhHHHHHHHHHHHHHHHhhhhHH
Q 043907          233 MAAQLGDHGGCSEG-YAYLILVLVCLCSSGYCYSWGPLAWLVPSEIF-PLEIRSAGQSITVAVNFVFTFLTAQTFLPML  309 (330)
Q Consensus       233 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~  309 (330)
                            .  +.++. ......+...++..++.....|. .++..|+. ++++|.+..+.-.....+++.+.+.+...+.
T Consensus        98 ------p--~~~~~~~~~~~~~~~~l~~~~~t~~~ip~-~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~  167 (473)
T PRK10429         98 ------H--LFEGTAQYVFVCVTYILWGMTYTIMDIPF-WSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFV  167 (473)
T ss_pred             ------C--CCCccHHHHHHHHHHHHHHHHHHHHcchH-HhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  0  00111 12223333333334444333333 34557887 5889999888866667777666665554443

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.43  E-value=3e-06  Score=52.02  Aligned_cols=64  Identities=19%  Similarity=0.287  Sum_probs=54.9

Q ss_pred             HHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHH
Q 043907          157 QQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQ  221 (330)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~  221 (330)
                      ..+.+......|.|.+.++.|+++.+.+ .+..+..+..+++.++.|.++||.++++........
T Consensus        11 ~~f~~~g~~~Pfl~~~~~~~Gl~~~~iG-il~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen   11 FYFAALGCLYPFLPLYLKQLGLSPSQIG-ILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHhhhhHhhhhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            3445566777889999999999999999 999999999999999999999999999887765443

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.41  E-value=4.3e-09  Score=89.80  Aligned_cols=114  Identities=21%  Similarity=0.125  Sum_probs=85.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccc
Q 043907          183 SLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGY  262 (330)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (330)
                      .. ...+...++..+|+++.|.++||+|||+.+..+..+..++.++..+..          ...+.+...+...+.+.+.
T Consensus        48 ~~-~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~----------~~~~~~~~~~~R~~~G~~~  116 (451)
T PF00083_consen   48 SS-LLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAP----------SYNNFWMLLIGRFLIGFGI  116 (451)
T ss_pred             HH-HHHHHHHhhhcccccccccccccccccccccccccccccccccccccc----------ccccccccccccccccccc
Confidence            34 678888999999999999999999999999999999988888877641          0014444455545555554


Q ss_pred             ccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhH
Q 043907          263 CYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPM  308 (330)
Q Consensus       263 ~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~  308 (330)
                      +.. .+....++.|..|++.|+...++.+....+|..++..+...+
T Consensus       117 g~~-~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~  161 (451)
T PF00083_consen  117 GGA-YVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIV  161 (451)
T ss_pred             ccc-cccccccccccccccccccccccccccccccccccccccccc
Confidence            433 345567889999999999999988887777766666555433

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.41  E-value=2.2e-07  Score=78.17  Aligned_cols=131  Identities=8%  Similarity=0.025  Sum_probs=76.6

Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHH
Q 043907          178 LGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCL  257 (330)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (330)
                      +++...+ ....+..++.++|..+......+..-|+++....++..+..+.-.... ...+..-..++.  +..+.-..+
T Consensus       252 fs~~f~~-~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv-~~~n~~~Gi~d~--~f~lgd~~l  327 (433)
T PF03092_consen  252 FSPSFYG-TLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLV-TRWNLDLGIPDQ--WFALGDTIL  327 (433)
T ss_pred             cCHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEE-EEEeeeeCcCCe--EEEEEhHHH
Confidence            6666666 556666777777777776666666667766655544443332211110 000000011122  111112222


Q ss_pred             hhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907          258 CSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK  313 (330)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g  313 (330)
                      ........+-|.. ...+|+.|+...|+.+++...+.+++..++..+...+.+..+
T Consensus       328 ~~~~~~i~~mP~l-vl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~  382 (433)
T PF03092_consen  328 EEVIGMIAFMPSL-VLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG  382 (433)
T ss_pred             HHHHHHHHHHHHH-HHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            2223333444443 344799999999999999999999999999999998887665

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.40  E-value=8.1e-05  Score=62.15  Aligned_cols=301  Identities=17%  Similarity=0.134  Sum_probs=144.8

Q ss_pred             CcchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc--------------ccCccchHHH
Q 043907            1 SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ--------------IKGGWGWRIS   66 (330)
Q Consensus         1 ~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~--------------~~~~~~wr~~   66 (330)
                      +++.+.+.|+.|+|+.+.++......-.+..- -+|-+-++++-.+.|+|.+..+.              ...+.+-.|.
T Consensus        67 ~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl-~~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~tie~Nisi~Wa  145 (461)
T KOG3098|consen   67 CLFAPSIVNFLGPKWALVIGATCYAAFPLGFL-FPNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRETIERNISIFWA  145 (461)
T ss_pred             HHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHH-hcchHHHHHHHHHhhhhHHheecccceehhhcCChhhHHHHHHHHHH
Confidence            35788999999999999999999988777654 46677888899999999998777              2222233443


Q ss_pred             HHhhhH-HHHHHHHHHhhcCC---CchhhhccCCc---HHH--HH---HHHHHH---hccc----chhHHHHHHHHhccc
Q 043907           67 LAMAAA-PASILTIGAIFLPE---TPNSKIQRSDD---HQK--AQ---KMLQRI---RGIS----DVKAELNDLIRASST  127 (330)
Q Consensus        67 ~~~~~~-~~~~~~~~~~~~pe---sp~~~~~~~~~---~~~--a~---~~~~~~---~~~~----~~~~~~~~~~~~~~~  127 (330)
                      +.-... .+.+.+......-+   .+.....+.-.   ..+  -.   ......   ...+    +.+....+.+..   
T Consensus       146 i~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~~~~~~~~~---  222 (461)
T KOG3098|consen  146 IGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSKDVVNCKSSS---  222 (461)
T ss_pred             HHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCccchhhhhhhc---
Confidence            333222 22122222222211   11100000000   000  00   000000   0000    000000000000   


Q ss_pred             cccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHH--H-hcCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 043907          128 SKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLF--R-TLKLGESTSLLLSAVVAGGMGTVLAIISMI  204 (330)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~  204 (330)
                      +......++..++....++.+. ....++.............|.-.  . ..+.+............++++.++....+.
T Consensus       223 ~~~~~~~l~~~~~l~~~~~ml~-L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~  301 (461)
T KOG3098|consen  223 ETSFSELLKLTFKLLKTPKMLL-LFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSI  301 (461)
T ss_pred             cccHHHHHHHHHHHhcCHhHHH-HHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHH
Confidence            0111122233332222223322 22222222122222222223222  1 233333333324566677888888888888


Q ss_pred             HHHH---hCcchhhhHhhHHHHHHHHHHHHHHHHHhC----CCCC-CCcchhHHHHHHHHHhhccccccccccccccccc
Q 043907          205 LADK---FGRKVLFLVGGMQMLVSQVIIGSIMAAQLG----DHGG-CSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSE  276 (330)
Q Consensus       205 l~d~---~grr~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  276 (330)
                      +.+|   +||++.+..+..+..+..++.......+.+    ++.+ .-.+......++..+.+.+-. .+....+.++.+
T Consensus       302 l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~-~~~t~~~~ii~~  380 (461)
T KOG3098|consen  302 LSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDA-CFNTQRYVIIAL  380 (461)
T ss_pred             HhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHH-HHHHHHHHHHHH
Confidence            8766   578888888777777666665544322211    0000 011123344444444444433 334455566677


Q ss_pred             ccchhhhhhhhhHHHHHHHHHHHHHHHhhhhH
Q 043907          277 IFPLEIRSAGQSITVAVNFVFTFLTAQTFLPM  308 (330)
Q Consensus       277 ~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~  308 (330)
                      .+ ++.|.++.++.-.-..+.+.++-+..+..
T Consensus       381 ~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~  411 (461)
T KOG3098|consen  381 LY-PDDRAQAFSLFKFYQSVASCVAFFFSPYL  411 (461)
T ss_pred             Hh-cCchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            77 46788888888777777776665555543

>PRK11462 putative transporter; Provisional

Probab=98.39  E-value=8.3e-06  Score=69.65  Aligned_cols=143  Identities=15%  Similarity=0.096  Sum_probs=91.9

Q ss_pred             hhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH----hCcchhhh-HhhHHHHHHHHHHHHHH
Q 043907          160 TGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTVLAIISMILADK----FGRKVLFL-VGGMQMLVSQVIIGSIM  233 (330)
Q Consensus       160 ~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~~~~-~~~~~~~~~~~~~~~~~  233 (330)
                      ........|+..++ +..|+++...+ .+..+.-+...+.-++.|.++||    +|||+..+ .+.+.++++..++... 
T Consensus        23 ~~~~~~~~~l~~fyt~~~Gl~~~~~g-~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~-  100 (460)
T PRK11462         23 IIFDNVMLYMMFFYTDIFGIPAGFVG-TMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYST-  100 (460)
T ss_pred             HHHHHHHHHHHHHHHHhhCCCHHHHH-HHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhC-
Confidence            33445556666665 55799999999 88999999999999999999997    57766554 4556666554443321 


Q ss_pred             HHHhCCCCCCCcch-hHHHHHHHHHhhcccccccccccccccccccc-hhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhh
Q 043907          234 AAQLGDHGGCSEGY-AYLILVLVCLCSSGYCYSWGPLAWLVPSEIFP-LEIRSAGQSITVAVNFVFTFLTAQTFLPMLCH  311 (330)
Q Consensus       234 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~  311 (330)
                           .  +.++.. ..+..+...++..++.....|. .++.+|+.+ +++|++..+.-.....+|..+++.+..++.+.
T Consensus       101 -----p--~~s~~~~~~y~~~~~~~~~~~~t~~~ipy-~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~  172 (460)
T PRK11462        101 -----P--DLSMNGKMIYAAITYTLLTLLYTVVNIPY-CALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNL  172 (460)
T ss_pred             -----C--CCCcchHHHHHHHHHHHHHHHHHHHhccH-HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 0  001111 2233333334444444333333 345567765 78999999999888888888887776665554


Q ss_pred             c
Q 043907          312 F  312 (330)
Q Consensus       312 ~  312 (330)
                      .
T Consensus       173 ~  173 (460)
T PRK11462        173 I  173 (460)
T ss_pred             h
Confidence            4

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.36  E-value=2e-05  Score=62.60  Aligned_cols=151  Identities=19%  Similarity=0.086  Sum_probs=111.7

Q ss_pred             hhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCC
Q 043907          160 TGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGD  239 (330)
Q Consensus       160 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (330)
                      .........++.+-++.|.+...++ ...++..++..+.+++..++.+|+|.++.+..+.++..++..+=..        
T Consensus        26 ~~itsvgPLL~~Ir~~~gls~s~aG-lLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~--------   96 (395)
T COG2807          26 PAITSVGPLLDEIRQDLGLSFSVAG-LLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSL--------   96 (395)
T ss_pred             hhhhhhhhhHHHHHHHhcccHHHHH-HHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhc--------
Confidence            3445566677788889999999999 9999999999999999999999999999998888777776654221        


Q ss_pred             CCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc-c-hhH
Q 043907          240 HGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK-A-GIF  317 (330)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~-~~~  317 (330)
                            ......+....+.+.+.+.+.. +....+-|.+|+ +-+..+|++.+...+++++++.+..++.++.+ | ...
T Consensus        97 ------~~~~~L~~gt~l~G~gIav~nV-LLPslIK~~Fpk-~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL  168 (395)
T COG2807          97 ------GGLPLLFLGTLLAGAGIAVINV-LLPSLIKRDFPK-RVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGAL  168 (395)
T ss_pred             ------ccHHHHHHHHHHHHhhHHHHHH-hhhHHHHhhccc-chhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHH
Confidence                  2233344444444445444433 334455788885 57889999999999999999999999988884 5 455


Q ss_pred             HHHHHHHHHh
Q 043907          318 FFFGGLVLIM  327 (330)
Q Consensus       318 ~~~~~~~~~~  327 (330)
                      .+.+..++++
T Consensus       169 ~~WAl~allA  178 (395)
T COG2807         169 GFWALLALLA  178 (395)
T ss_pred             HHHHHHHHHH
Confidence            5555555544

>TIGR00788 fbt folate/biopterin transporter

Probab=98.35  E-value=8.7e-06  Score=69.62  Aligned_cols=164  Identities=14%  Similarity=0.088  Sum_probs=92.7

Q ss_pred             hHHHHHHHHHHHHhhhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhC-----cchhhhHhh
Q 043907          146 QPVMAILIPFFQQVTGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFG-----RKVLFLVGG  219 (330)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-----rr~~~~~~~  219 (330)
                      ..+..+....+.+... .......+.++ +++|.+..+.+ ...+...+...+-.+ .|.++||++     ||+.+..+.
T Consensus        26 ~~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~-~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~  102 (468)
T TIGR00788        26 VVLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQ-RLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSG  102 (468)
T ss_pred             hHHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHH
Confidence            3334444444555555 44444444455 56899999987 677777777777555 999999996     566666665


Q ss_pred             HHHH-HHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhh---hhHHHHHHH
Q 043907          220 MQML-VSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAG---QSITVAVNF  295 (330)
Q Consensus       220 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~---~g~~~~~~~  295 (330)
                      ++.. +....+..            +++..........+...+ ........-.+..|..+ +.++..   .+.......
T Consensus       103 ~l~~~~~~~~l~~------------~~~~~~~~~~~~~l~~~~-~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~  168 (468)
T TIGR00788       103 LLGSAILYGLLPG------------KVSSAKVAAAFIFLAALA-KALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASA  168 (468)
T ss_pred             HHHHHHHHHhccc------------ccchHHHHHHHHHHHHHH-HHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHH
Confidence            4442 22111111            112122222122222222 22333445566678888 544443   333334445


Q ss_pred             HHHHHHHHhhhhHHhhccc-hhHHHHHHHHHH
Q 043907          296 VFTFLTAQTFLPMLCHFKA-GIFFFFGGLVLI  326 (330)
Q Consensus       296 ~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~  326 (330)
                      +|..+++.+.+.+.+..+| ..|++.+++.++
T Consensus       169 ~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll  200 (468)
T TIGR00788       169 TGGLISSLLGGPLLDKTLTRILFLITAALLLL  200 (468)
T ss_pred             HHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Confidence            8999999999999988885 455555554443

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.33  E-value=2.5e-05  Score=65.87  Aligned_cols=120  Identities=15%  Similarity=0.136  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccccccccc
Q 043907          191 AGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLA  270 (330)
Q Consensus       191 ~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (330)
                      .++..++.++..|.++||+|||..+........+......+.              . ++..+ ..-..++++ ......
T Consensus        71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~--------------~-~~~~~-~~~l~g~~~-~~~s~~  133 (463)
T KOG2816|consen   71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ--------------G-YWFFL-LLGLSGGFS-AIFSVG  133 (463)
T ss_pred             hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH--------------H-HHHhh-hcccccchh-hhhhhh
Confidence            367888999999999999999999988887777766665542              1 22222 222222333 223355


Q ss_pred             ccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc-chhHHHHHHHHHHh
Q 043907          271 WLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK-AGIFFFFGGLVLIM  327 (330)
Q Consensus       271 ~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~  327 (330)
                      .++++|....+.|....|+.+.....+..++|.+.+.+.+..| ...+.+-++..++.
T Consensus       134 ~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~  191 (463)
T KOG2816|consen  134 FAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILS  191 (463)
T ss_pred             hhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence            6788999999999999999999999999999999999999887 45666655554443

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.30  E-value=1.2e-05  Score=63.96  Aligned_cols=141  Identities=18%  Similarity=0.066  Sum_probs=95.9

Q ss_pred             HHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCC
Q 043907          165 VGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCS  244 (330)
Q Consensus       165 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (330)
                      .....|..-...|.+..+.. ++......+..+++...|...|++|||+..........+...+-+.             
T Consensus        97 ~s~i~~~l~~~w~~s~~q~~-llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~-------------  162 (528)
T KOG0253|consen   97 LSLILPALDEVWGPSEGQAP-LLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGA-------------  162 (528)
T ss_pred             HHHHHHHHHhhhchhhhhhh-HHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcC-------------
Confidence            33444555556677777777 8888889999999999999999999999888776666555444332             


Q ss_pred             cchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccchhHHHHHH
Q 043907          245 EGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAGIFFFFGG  322 (330)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  322 (330)
                      .++.....++-++.+.+.+.  .|...++-.|..|..+|...+-+. ....+|......+.-.++.+.||..++....
T Consensus       163 spnf~~L~~f~~l~~~g~gg--~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~  237 (528)
T KOG0253|consen  163 SPNFASLCVFRALWGFGVGG--LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSS  237 (528)
T ss_pred             CCCeehhhHHHHHHhccCCC--ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            13333344444444444443  444444447999999999877665 6666777777777767777888766555443

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.30  E-value=2.8e-06  Score=70.78  Aligned_cols=126  Identities=14%  Similarity=0.073  Sum_probs=89.8

Q ss_pred             HHHHh--cCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCc-chhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcch
Q 043907          171 VLFRT--LKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGR-KVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGY  247 (330)
Q Consensus       171 ~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (330)
                      .|.++  .+-+.+..+ +......++.++.+++.|+...|.+. |+.++.+.+++.++.++.....+.        ++..
T Consensus        59 pYl~~lD~~A~~~ffG-~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~--------~~~~  129 (488)
T KOG2325|consen   59 PYLQKLDPTATATFFG-LVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYV--------PNGV  129 (488)
T ss_pred             hhhhhcCCCCCcchhh-HHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhc--------ccch
Confidence            34444  566666777 88899999999999999999999886 777888999999998887444321        2235


Q ss_pred             hHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhh
Q 043907          248 AYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLP  307 (330)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~  307 (330)
                      .+.++.+-.+.+.  +.+.....-.|+++....++|.++++.......++..+||.+...
T Consensus       130 ~y~mL~~R~l~Gv--g~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~  187 (488)
T KOG2325|consen  130 KYLMLVARILTGV--GVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLA  187 (488)
T ss_pred             HHHHHHHHHHcCc--CcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHH
Confidence            5555555555544  434445566788887777888888888777666666666666443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.16  E-value=8.7e-06  Score=69.04  Aligned_cols=143  Identities=17%  Similarity=0.213  Sum_probs=93.3

Q ss_pred             hHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH----HhCcchhhh-HhhHHHHHHHHHHHHHHHHHh
Q 043907          164 IVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTVLAIISMILAD----KFGRKVLFL-VGGMQMLVSQVIIGSIMAAQL  237 (330)
Q Consensus       164 ~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~grr~~~~-~~~~~~~~~~~~~~~~~~~~~  237 (330)
                      ....+.+.++ +..|+++...+ .+.....+...+..++.|.++|    |+|||+..+ .+.+..+++..++......  
T Consensus        19 ~~~~~~~~f~~~~~gl~~~~~g-~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~--   95 (428)
T PF13347_consen   19 LLSSYLLYFYTDVLGLSPALAG-LILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPA--   95 (428)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccc--
Confidence            3444544444 56799999888 8888889999999999999999    788877655 4556666655554432000  


Q ss_pred             CCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccc-hhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907          238 GDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFP-LEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK  313 (330)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g  313 (330)
                         +........+..+..+++..++.....|. .++.+|..+ +++|.+..+.-.....+|..+.+.+.+.+.+..+
T Consensus        96 ---~~~~~~~~~~~~~~~~l~~~~~t~~~i~~-~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g  168 (428)
T PF13347_consen   96 ---GLSFTAKLVWLFVFYILFDIAYTFVQIPY-NALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFG  168 (428)
T ss_pred             ---hhhhhhHHHHHHHHHHHHHHhhhhccCch-hhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence               00000112223444444455555444433 455689887 5789999999888888888877777777775554

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.15  E-value=0.00016  Score=51.20  Aligned_cols=136  Identities=10%  Similarity=0.090  Sum_probs=91.4

Q ss_pred             HhhhhHhHHHhHHHHHHhcC------CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHH
Q 043907          158 QVTGINIVGLYSPVLFRTLK------LGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGS  231 (330)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~  231 (330)
                      .+.++.........+.++.+      .++.... .-..+......+.+++.+.+.+++|.|+.++++.+...+-......
T Consensus         8 ~Ftaf~t~~~i~~svi~s~~~~~~~~i~~~~G~-~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~   86 (156)
T PF05978_consen    8 LFTAFQTQSFIQESVIHSVHERNPSSISAGLGY-YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY   86 (156)
T ss_pred             HHHHHhhhhHHHHHHHHHHhhcCcccccccccH-HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence            33444444444444443332      2333333 5667777788888899999999999999999888777654444322


Q ss_pred             HHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHH
Q 043907          232 IMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPML  309 (330)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~  309 (330)
                                    .+.+..+....+.+.+.+..|.+. -.++.+...++.|++-.++.-.....+.+++....-.+.
T Consensus        87 --------------~~~~~l~~~s~l~G~~~a~lW~aq-g~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen   87 --------------PNSYTLYPASALLGFGAALLWTAQ-GTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             --------------hhHHHHHHHHHHHhhhhHHhhHhh-hHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          445666666777777777777654 345578888899999999888888777777766654443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.15  E-value=1.4e-05  Score=60.66  Aligned_cols=54  Identities=19%  Similarity=0.253  Sum_probs=44.7

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~   56 (330)
                      .+.|-++||-|||+.-+.-++-++++++. -.+|.|-.++++|.+-|+..+....
T Consensus        90 tivgSLaDkqGRKracvtycitYiLsCiT-KhSpqYkVLmVGR~LGGiaTsLLFS  143 (454)
T KOG4332|consen   90 TIVGSLADKQGRKRACVTYCITYILSCIT-KHSPQYKVLMVGRVLGGIATSLLFS  143 (454)
T ss_pred             HHHHHHHhhhccccceeeehHHHHHHHHh-hcCCceEEEeehhhhhhHHHHHHHH
Confidence            35788999999999887777777766653 4679999999999999999988776

>PRK09848 glucuronide transporter; Provisional

Probab=98.07  E-value=0.00012  Score=62.59  Aligned_cols=64  Identities=11%  Similarity=0.209  Sum_probs=46.4

Q ss_pred             hhHhHHHhHHHHHH-hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh----Ccchhh-hHhhHHHHHH
Q 043907          161 GINIVGLYSPVLFR-TLKLGESTSLLLSAVVAGGMGTVLAIISMILADKF----GRKVLF-LVGGMQMLVS  225 (330)
Q Consensus       161 ~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~----grr~~~-~~~~~~~~~~  225 (330)
                      .......+.+.+++ ..|++..+.+ ....+..+...+..++.|+++||.    |||+.. ..+.+...+.
T Consensus        23 ~~~~~~~~l~~y~~~~~gl~~~~~g-~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~   92 (448)
T PRK09848         23 AFAMGALFLLSYYTDVAGVGAAAAG-TMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIF   92 (448)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHH
Confidence            33444445555554 5699999999 999999999999999999999996    666654 4444444433

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.06  E-value=0.00011  Score=61.35  Aligned_cols=128  Identities=13%  Similarity=0.067  Sum_probs=77.3

Q ss_pred             hhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCc-chhhhHhhHHHHHHHHHHHHHHHHHhC
Q 043907          160 TGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGR-KVLFLVGGMQMLVSQVIIGSIMAAQLG  238 (330)
Q Consensus       160 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (330)
                      ........+.+.++++.|++..+.+ .+.+...+..++..++.|.++||.++ |+.+.+..++.++........      
T Consensus        16 ~~~G~~~p~~~~~L~~~G~s~~qIG-~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~------   88 (400)
T PF03825_consen   16 FAYGAFLPYLPLYLESRGFSGTQIG-ILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFS------   88 (400)
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHh------
Confidence            3445666788899999999999999 99999999999999999999999864 555555545444443333221      


Q ss_pred             CCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHh
Q 043907          239 DHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQT  304 (330)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~  304 (330)
                             ...+....+..++...+. ...|+..++..+...  .++.-.|-....+.+|-.++...
T Consensus        89 -------~~f~~~~~~~~l~~~~~~-p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~  144 (400)
T PF03825_consen   89 -------SSFWWLFVIMLLFSFFFS-PTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALA  144 (400)
T ss_pred             -------ccHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHH
Confidence                   223333333333333322 223343344333333  34455555555555555555443

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=97.98  E-value=4.2e-05  Score=60.33  Aligned_cols=277  Identities=11%  Similarity=0.039  Sum_probs=148.1

Q ss_pred             hhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-----------------------------
Q 043907            6 SVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ-----------------------------   56 (330)
Q Consensus         6 ~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~-----------------------------   56 (330)
                      .+.|-.--|++++.-.+.......+.-+.++.+.+-+.-+..|...+....                             
T Consensus        64 lLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaEIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~  143 (433)
T KOG3810|consen   64 LLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAAEIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGK  143 (433)
T ss_pred             HHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHHHHhhhheeeeecCHHHHHHHHHHhHHHHHHHh
Confidence            356777678877777666667777777777777777777777777665544                             


Q ss_pred             ---------c--cCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHHHHhc
Q 043907           57 ---------I--KGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDLIRAS  125 (330)
Q Consensus        57 ---------~--~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  125 (330)
                               +  .+..+++..-.+......+.....+++|..+|-+..+.+ .++  ....+.+..+. ..+..+..+  
T Consensus       144 ~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~-~~~--~~v~~~e~~~~-~~~~~~~l~--  217 (433)
T KOG3810|consen  144 FVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRL-EDK--ISVGDLEEMNP-QASYMSYLR--  217 (433)
T ss_pred             HHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcc-ccc--ceeccchhcCc-cchhhHHHH--
Confidence                     1  122344444445544444555666778877754443333 111  11111100000 000000000  


Q ss_pred             cccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcC-CCCchhhHHHHHHHHHHHHHHHHHHHH
Q 043907          126 STSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLK-LGESTSLLLSAVVAGGMGTVLAIISMI  204 (330)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~g~  204 (330)
                          .....+.+-++...+++.+....+.+....++++-..+|...+-++.. -+.+...+..-.+..+.+.++.+..|.
T Consensus       218 ----~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~  293 (433)
T KOG3810|consen  218 ----GAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVAPNPANVYNGAVEAVSTLLGAIAALAAGY  293 (433)
T ss_pred             ----HHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHHHHHHHHHHHHh
Confidence                000111111223334455555666666677788888888776666543 222222224556667777888888888


Q ss_pred             HHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhh
Q 043907          205 LADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRS  284 (330)
Q Consensus       205 l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~  284 (330)
                      +--++.|+.-++++.....-+..++...           ..++.|.......++...+....... ..-+++....|.-|
T Consensus       294 l~i~w~r~g~~ll~~~s~~~agllf~m~-----------~t~~Iw~~Ya~yvlfr~~y~l~itiA-~~~iA~nL~~e~~g  361 (433)
T KOG3810|consen  294 LNINWNRWGDLLLAVGSAVQAGLLFIMA-----------QTQHIWVCYAGYVLFRVIYQLTITIA-TFQIARNLSSELFG  361 (433)
T ss_pred             eeeccchhhHHHHHHHHHHhhhhhhhhh-----------cccceehhhhhHHHHHhhHhhhhhHH-HHHHHHhhhhhhhe
Confidence            8666666643333333222222222221           23556666666666666666554433 33335666778889


Q ss_pred             hhhhHHHHHHHHHHHHHHHh
Q 043907          285 AGQSITVAVNFVFTFLTAQT  304 (330)
Q Consensus       285 ~~~g~~~~~~~~~~~~~~~~  304 (330)
                      ..+|+.....-+...+.+.+
T Consensus       362 LvFGiNTFvAl~lQsilT~i  381 (433)
T KOG3810|consen  362 LVFGINTFVALILQSILTLI  381 (433)
T ss_pred             eeeehHHHHHHHHHHhheEE
Confidence            99998887766655554444

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.96  E-value=0.00013  Score=59.42  Aligned_cols=139  Identities=15%  Similarity=0.083  Sum_probs=84.1

Q ss_pred             HHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhC-----cchhhhHhh-HHHHHHHHHHHHHHHHHhCC--CCCC
Q 043907          172 LFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFG-----RKVLFLVGG-MQMLVSQVIIGSIMAAQLGD--HGGC  243 (330)
Q Consensus       172 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-----rr~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~  243 (330)
                      +..+++.+....+ ......... .+.++..|+.+|+.+     ||..++... .....+..+....... ...  .+..
T Consensus         6 MIvEL~vpA~lv~-~lval~~~~-ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~-l~~~~~~~~   82 (403)
T PF03209_consen    6 MIVELGVPAWLVA-LLVALHYLV-APLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLL-LAESGQQSS   82 (403)
T ss_pred             HHHHhccHHHHHH-HHHHHHHHH-HHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHH-Hcccccccc
Confidence            3456677766666 444444444 356899999999998     887766544 4444444433333222 122  1111


Q ss_pred             CcchhHHHHHHHHHhhcccccccc-cccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907          244 SEGYAYLILVLVCLCSSGYCYSWG-PLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK  313 (330)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g  313 (330)
                      .+...+.......+...+.+.... ....++.+|..|+++|+++.++...+.-+|-.++..+.+.+.+.+.
T Consensus        83 ~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s  153 (403)
T PF03209_consen   83 GPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFS  153 (403)
T ss_pred             cccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence            122223223323322223332322 2234666899999999999999999998999999999999888765

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.93  E-value=0.00041  Score=61.49  Aligned_cols=133  Identities=16%  Similarity=0.050  Sum_probs=87.6

Q ss_pred             HHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH-hCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHH
Q 043907          173 FRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADK-FGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLI  251 (330)
Q Consensus       173 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (330)
                      .+..|+++..+. ..........-+...++|+++|+ +||++.+..+.++..++..++.+...     ....+.......
T Consensus        15 ~~~lg~~~~~A~-~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~-----~~~~~~~~~~~~   88 (654)
T TIGR00926        15 LNFLGFSESTST-VLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAI-----PSSGHPLHDLLD   88 (654)
T ss_pred             HHHcCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccC-----cccccchHHHHH
Confidence            345788888777 66666677777888889999998 69999999988888888776665310     000001112223


Q ss_pred             HHHHHHhhcccccccccccccccccccchh---hhhhhhhHHHHHHHHHHHHHHHhhhhHHhhc
Q 043907          252 LVLVCLCSSGYCYSWGPLAWLVPSEIFPLE---IRSAGQSITVAVNFVFTFLTAQTFLPMLCHF  312 (330)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  312 (330)
                      +..+.+...|.+ +.-|...+...|.++++   .|...+.+.++..++|+.+++.+.+.+.+..
T Consensus        89 l~gLaLia~G~G-giKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~  151 (654)
T TIGR00926        89 LLGLALIALGTG-GIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDV  151 (654)
T ss_pred             HHHHHHHHhhcc-ccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            333333333333 23344455556777643   4777888999999999999999999887553

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=97.91  E-value=0.0003  Score=58.89  Aligned_cols=153  Identities=20%  Similarity=0.171  Sum_probs=101.1

Q ss_pred             HHHHHHHhhhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH----hCcchh-hhHhhHHHHHH
Q 043907          152 LIPFFQQVTGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTVLAIISMILADK----FGRKVL-FLVGGMQMLVS  225 (330)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~~-~~~~~~~~~~~  225 (330)
                      ...-+...........|+..++ +..|+++..++ .++.+.=+.-.+.-++.|.++||    +||++. ++.+.+..++.
T Consensus        18 g~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG-~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~   96 (467)
T COG2211          18 GLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAG-TIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIV   96 (467)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHH-HHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHH
Confidence            3333333344456667777776 45799999999 88999999999999999999997    465555 44454555555


Q ss_pred             HHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccccccccccccccccc-chhhhhhhhhHHHHHHHHHHHHHHHh
Q 043907          226 QVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIF-PLEIRSAGQSITVAVNFVFTFLTAQT  304 (330)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~g~~~~~~~~~~~~~~~~  304 (330)
                      ..++....       +...........+...++..++....-|- .++.+|+. .+++|.+..+.-.....+++.+...+
T Consensus        97 ~~l~F~~p-------~~~~~~k~~ya~vtY~l~~l~YT~vniPy-~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~  168 (467)
T COG2211          97 AVLLFITP-------DFSMTGKLIYALVTYMLLGLGYTLVNIPY-GALGPEITQDPQERASLTSWRMVFASLGGLLVAVL  168 (467)
T ss_pred             HHHHHcCC-------CcccCcchHHHHHHHHHHHHHHHheeCch-hhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            54443320       00011333444444455555665554444 24446665 46889999999999999999999888


Q ss_pred             hhhHHhhcc
Q 043907          305 FLPMLCHFK  313 (330)
Q Consensus       305 ~~~~~~~~g  313 (330)
                      .+++....+
T Consensus       169 ~~plv~~~g  177 (467)
T COG2211         169 FPPLVKLFG  177 (467)
T ss_pred             HHHHHHHhC
Confidence            888877654

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.74  E-value=0.00032  Score=57.66  Aligned_cols=125  Identities=14%  Similarity=0.037  Sum_probs=83.2

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhH--HHHHHHH
Q 043907          179 GESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAY--LILVLVC  256 (330)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  256 (330)
                      +.+... +.+.++.+..++..+.+.|+.||+|-|....++.....++..+=....       .+.-++..+  .......
T Consensus        77 s~~~~~-wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss-------~p~v~~~f~~~l~~~Gq~  148 (480)
T KOG2563|consen   77 SSSAAD-WLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISS-------LPFVPPLFRRPLTHTGQS  148 (480)
T ss_pred             chHHHH-HHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhcc-------CccccccchhhhhHHhHH
Confidence            555566 888899999999999999999999999999999998888876644331       000012222  2222222


Q ss_pred             HhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhc
Q 043907          257 LCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHF  312 (330)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  312 (330)
                      +.......... ++.-...-.+|+++|+++..+..+.+.+|.+++..+-+.+..+.
T Consensus       149 iaa~Aq~Fim~-lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~  203 (480)
T KOG2563|consen  149 IAAAAQPFILG-LPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS  203 (480)
T ss_pred             HHHHhhhHhhc-cccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence            22211111111 22222234589999999999999999999999888887777654

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=97.64  E-value=0.0012  Score=56.46  Aligned_cols=112  Identities=20%  Similarity=0.177  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHH-HHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccc
Q 043907          186 LSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQML-VSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCY  264 (330)
Q Consensus       186 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (330)
                      +..++..+...+..++.|.++|+-++||.++....... ++...+.+.           ++...+...+..++...+++.
T Consensus        74 ~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v-----------~~~~~~~~~~l~iia~v~~~~  142 (477)
T PF11700_consen   74 YANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFV-----------SPGQWWLALVLFIIANVGYEA  142 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHh-----------CcchHHHHHHHHHHHHHHHHH
Confidence            55778888889999999999999988877666554444 344444443           223334444444444444443


Q ss_pred             ccccccccccccccchhhh--------------------------hhhhhHHHHHHHHHHHHHHHhhhhHH
Q 043907          265 SWGPLAWLVPSEIFPLEIR--------------------------SAGQSITVAVNFVFTFLTAQTFLPML  309 (330)
Q Consensus       265 ~~~~~~~~~~~e~~p~~~r--------------------------~~~~g~~~~~~~~~~~~~~~~~~~~~  309 (330)
                      +.. ...++..|+.+++.+                          ++..+.....+++|+.+.-.+.-.+.
T Consensus       143 ~~v-fyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~  212 (477)
T PF11700_consen  143 SNV-FYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLV  212 (477)
T ss_pred             HHH-HHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            322 445677888887777                          89999999999999888766654443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=97.57  E-value=0.0011  Score=41.20  Aligned_cols=69  Identities=14%  Similarity=-0.037  Sum_probs=60.8

Q ss_pred             HhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHH
Q 043907          163 NIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSI  232 (330)
Q Consensus       163 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~  232 (330)
                      ..+...+|.+.++.+++.++.+ ++.+...++.++|.+...++.++.++++.+..+.+...+....+++.
T Consensus         9 FayTplLP~M~~~~~ls~~~ag-~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~   77 (85)
T PF06779_consen    9 FAYTPLLPLMQADGGLSLSQAG-WLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT   77 (85)
T ss_pred             HHHHhHhHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455678999999999999999 99999999999999999999999888888888888888888777765

Note that many members are hypothetical proteins.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.52  E-value=0.02  Score=51.16  Aligned_cols=55  Identities=18%  Similarity=0.246  Sum_probs=41.7

Q ss_pred             cchhhhhhh-hchhHHHHHHHHHHHHHHHHHhhhhh--------HHHHHHHHHHhhcccccccc
Q 043907            2 LIASSVTRA-IGRKVSILIGGVAFLADSAYGGSAFN--------IYMLIFGRLLLGVGIGFGNQ   56 (330)
Q Consensus         2 ~~~g~l~d~-~Grk~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~r~l~G~~~g~~~~   56 (330)
                      +++|.++|+ +||++.+.++.++..++.++.+++..        ....+++-.+..+|.|+.-+
T Consensus        41 ilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp  104 (654)
T TIGR00926        41 LIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKP  104 (654)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhcccccc
Confidence            467899996 79999999999999999888776421        23355666777788887666

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=97.17  E-value=0.00076  Score=55.61  Aligned_cols=159  Identities=16%  Similarity=0.108  Sum_probs=94.5

Q ss_pred             hhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH----hCcchhhhHhhH
Q 043907          145 PQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADK----FGRKVLFLVGGM  220 (330)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~~~~~~~~  220 (330)
                      ++.+....+....+ .+...-..|.|.+.++.|.+....+ ..-....+.+++.+++.|..+||    +||||..+....
T Consensus        32 ~~li~v~~ia~Gvq-f~wA~elsy~tPyl~~lGvphk~~S-~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s  109 (498)
T KOG0637|consen   32 RKLISVASIAAGVQ-FGWALELSYLTPYLQSLGVPHKWSS-IIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGS  109 (498)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHhccccHHHHHcCCCccccc-ccccccccccceecccccccccccccccccccchHHHhh
Confidence            34444444444444 3345556788888999999998888 77777788899999999999997    688877665544


Q ss_pred             -HHHHHHHHHHHHHHHHh--CCCCCCCc--chhHHHHHHHHHhhcccccccccccccccccccchhhhhh-hhhHHHHHH
Q 043907          221 -QMLVSQVIIGSIMAAQL--GDHGGCSE--GYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSA-GQSITVAVN  294 (330)
Q Consensus       221 -~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~-~~g~~~~~~  294 (330)
                       ...++.++++.......  .+++..+.  ......++...+.-.......+|. -++..|+..++.+.+ +++......
T Consensus       110 ~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~-ra~L~Dl~~~d~~~~~Ans~f~~f~  188 (498)
T KOG0637|consen  110 LLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPC-RALLADLARGDAKKTRANSVFSFFM  188 (498)
T ss_pred             HHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhH-HHHHHHhccChhhhhccchhHHHHH
Confidence             44455554444322211  12211111  112222223333333333333433 456678876666666 888887777


Q ss_pred             HHHHHHHHHhhh
Q 043907          295 FVFTFLTAQTFL  306 (330)
Q Consensus       295 ~~~~~~~~~~~~  306 (330)
                      .+|+.++=...+
T Consensus       189 avGnvLGY~~g~  200 (498)
T KOG0637|consen  189 AVGNVLGYALGS  200 (498)
T ss_pred             Hhcceeeeeccc
Confidence            777766654444

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.16  E-value=0.0023  Score=54.31  Aligned_cols=142  Identities=25%  Similarity=0.283  Sum_probs=84.0

Q ss_pred             HHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-----CcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCC
Q 043907          170 PVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKF-----GRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCS  244 (330)
Q Consensus       170 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (330)
                      |.+.+++|+++.+.. .......+.. ...++.|.++|-+     .||+.++++.++..++...+....         ..
T Consensus        14 ~~l~~~l~ls~~~~~-~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~---------~~   82 (433)
T PF03092_consen   14 PFLKDDLGLSPAQLQ-RLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLP---------AS   82 (433)
T ss_pred             HHHHHHcCCCHHHHH-HHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcc---------cc
Confidence            445567899998877 5555544433 4568888999986     355556666666655555554431         00


Q ss_pred             cchhHHHHHHHHHhhccccccccccccccccccc---chhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc-chhHHHH
Q 043907          245 EGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIF---PLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK-AGIFFFF  320 (330)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~---p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~  320 (330)
                      ..+......+..+...+.... ....-.++.|..   |.+ ||...+.......+|+.++..+.|.+.+..+ ...|.+.
T Consensus        83 ~~s~~~~~~~l~la~~g~a~~-DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~  160 (433)
T PF03092_consen   83 ESSAAIAVVLLFLASFGYAFA-DVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLIS  160 (433)
T ss_pred             cchhhhHHHHHHHHHHHHHHH-HHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHH
Confidence            112222222222222222211 123334445654   444 8888888888999999999999999998877 3455554


Q ss_pred             HHHH
Q 043907          321 GGLV  324 (330)
Q Consensus       321 ~~~~  324 (330)
                      +.+.
T Consensus       161 ~~~~  164 (433)
T PF03092_consen  161 AALP  164 (433)
T ss_pred             HHHH
Confidence            4443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=97.16  E-value=0.0085  Score=48.12  Aligned_cols=135  Identities=19%  Similarity=0.159  Sum_probs=82.1

Q ss_pred             hHHHhHHHHHHhcCCCC--chhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCC
Q 043907          164 IVGLYSPVLFRTLKLGE--STSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHG  241 (330)
Q Consensus       164 ~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (330)
                      ......+.+..+.+.+.  .... .......+...++.++.|.+.||.|||+.+..+......+.+...+.         
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~---------   89 (338)
T COG0477          20 LLSPALPLLLSTLSLSSGRLLYG-LLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALA---------   89 (338)
T ss_pred             hHHHHHHHHHHHcCCCchhHHHH-HHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhC---------
Confidence            33445555555555554  2455 77788888888888999999999999977776665533333333322         


Q ss_pred             CCCcchhHHHHHHHHHhhcccccccccccccccccccch-hhhhhhhhHHHH-HHHHHHHHHHHhhhhHHhh
Q 043907          242 GCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPL-EIRSAGQSITVA-VNFVFTFLTAQTFLPMLCH  311 (330)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~r~~~~g~~~~-~~~~~~~~~~~~~~~~~~~  311 (330)
                        .....+.........+.+.+ ...+....+..|..|. +.|+...+.... ....+..+++.+.+.+.+.
T Consensus        90 --~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (338)
T COG0477          90 --PNVGLALLLILRLLQGLGGG-GLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA  158 (338)
T ss_pred             --ccchHHHHHHHHHHHHhhhH-HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              11122222322222222222 3344556677888887 678888888777 4666777777666665554

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.12  E-value=0.021  Score=48.70  Aligned_cols=127  Identities=9%  Similarity=-0.007  Sum_probs=79.4

Q ss_pred             chhhHHHHHHHHHHHHHH-HHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCC----------CCcc---
Q 043907          181 STSLLLSAVVAGGMGTVL-AIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGG----------CSEG---  246 (330)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~-~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~---  246 (330)
                      +... ++.+...+...+. .++.+++++|++|++++-...........++++........-++          .+.+   
T Consensus        43 e~i~-fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~  121 (472)
T TIGR00769        43 EIIP-FLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMG  121 (472)
T ss_pred             hhHH-HHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHH
Confidence            4444 5555555555555 78899999999999988877766666666665553211110000          0000   


Q ss_pred             -----hhHHHHHHHHHhhcccccc-cccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHH
Q 043907          247 -----YAYLILVLVCLCSSGYCYS-WGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPML  309 (330)
Q Consensus       247 -----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~  309 (330)
                           ..|....... ..-.++.. .+-+.|.+++|.+++++-.+-.++....++++..+++.+...+.
T Consensus       122 ~i~~~~~W~~~~FYv-~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       122 FIAILRIWSFALFYV-MAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHHhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 0111111111 11122222 22366788899999999999999999999999999999988876

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=97.09  E-value=0.012  Score=47.71  Aligned_cols=43  Identities=7%  Similarity=-0.106  Sum_probs=36.2

Q ss_pred             ccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907          271 WLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK  313 (330)
Q Consensus       271 ~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g  313 (330)
                      .+..+++.++...||.+.+.|...++|+---..+...+.|...
T Consensus       391 maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~lt  433 (510)
T KOG3574|consen  391 MAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLT  433 (510)
T ss_pred             HHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCc
Confidence            4555788999999999999999999999888888888877654

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=96.98  E-value=0.0053  Score=47.38  Aligned_cols=56  Identities=20%  Similarity=0.187  Sum_probs=45.6

Q ss_pred             CcchhhhhhhhchhHHHHHHHHHHHHHHHHHhhh-------hhHHHHHHHHHHhhcccccccc
Q 043907            1 SLIASSVTRAIGRKVSILIGGVAFLADSAYGGSA-------FNIYMLIFGRLLLGVGIGFGNQ   56 (330)
Q Consensus         1 ~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~r~l~G~~~g~~~~   56 (330)
                      +++.|.+.|++|+|.++.+|.....+|......+       ++++.+.+..++.|.+.+....
T Consensus        53 G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~t  115 (250)
T PF06813_consen   53 GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNT  115 (250)
T ss_pred             cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhh
Confidence            3578999999999999999999999998877654       4678888888888887665433

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.88  E-value=0.073  Score=45.24  Aligned_cols=57  Identities=16%  Similarity=0.078  Sum_probs=33.8

Q ss_pred             hHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhh
Q 043907          248 AYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTF  305 (330)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~  305 (330)
                      .+..++...+++...+ -.......+..+..++++|..+-.+...+-.+|-.+|+.+.
T Consensus       372 d~~~~~~~~l~gltnG-y~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~  428 (437)
T TIGR00939       372 DAYFIILMLLFGFSNG-YLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS  428 (437)
T ss_pred             cHHHHHHHHHHHHhhh-HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444433332 22234455667778888898888877777766666666553

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=96.58  E-value=0.11  Score=39.98  Aligned_cols=24  Identities=21%  Similarity=0.156  Sum_probs=16.6

Q ss_pred             cchHHHHHhhhHHHHHHHHHHhhc
Q 043907           61 WGWRISLAMAAAPASILTIGAIFL   84 (330)
Q Consensus        61 ~~wr~~~~~~~~~~~~~~~~~~~~   84 (330)
                      .+||+.+.+.+++.++-++.+..+
T Consensus        38 ~~W~~I~si~~lL~~IpLIly~if   61 (267)
T PF07672_consen   38 NNWQWILSIFILLIFIPLILYIIF   61 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            359999988887776665554443

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=96.43  E-value=0.00046  Score=53.29  Aligned_cols=128  Identities=13%  Similarity=-0.020  Sum_probs=87.1

Q ss_pred             HhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH-hCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHH
Q 043907          174 RTLKLGESTSLLLSAVVAGGMGTVLAIISMILADK-FGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLIL  252 (330)
Q Consensus       174 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (330)
                      .+.+.+..+.. ++.+....-+++.++++|++.|| +|-|...++-+....++.++++.-.          -.+..|.+.
T Consensus        72 ~d~ni~~akft-LlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Gg----------i~~aFw~M~  140 (459)
T KOG4686|consen   72 LDSNIEYAKFT-LLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGG----------ISHAFWTML  140 (459)
T ss_pred             cccccceeeee-eeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhch----------HHHHHHHHH
Confidence            44566666666 77888889999999999999998 4666554544444555555444321          114556666


Q ss_pred             HHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907          253 VLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK  313 (330)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g  313 (330)
                      ..-++++.+.. +.......+..-.+..++-+.++|+.....++|+.+--.+.+++++..+
T Consensus       141 ~GRF~FGIGgE-SlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~  200 (459)
T KOG4686|consen  141 AGRFLFGIGGE-SLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMG  200 (459)
T ss_pred             hhheeeccCch-hhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHH
Confidence            66666655533 3333455666667788889999999999999999887777777777654

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.42  E-value=0.00085  Score=58.27  Aligned_cols=149  Identities=11%  Similarity=-0.103  Sum_probs=1.0

Q ss_pred             hhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCC
Q 043907          160 TGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGD  239 (330)
Q Consensus       160 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (330)
                      ..........+.+-++++++..+.+ ++.+..-++.++..++..+..+|..|-+.+-.+.++++++.+++.+-.......
T Consensus        17 ~~~g~~~~~lttiErRF~l~S~~~G-~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y   95 (539)
T PF03137_consen   17 MVSGYVNSSLTTIERRFGLSSSQSG-LISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPY   95 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCC
Confidence            3333444455666688999999999 999999999999999999999997777788888888888888876543221100


Q ss_pred             ----C-------------C----------------CCCcchhHHHHHHHHHhhccccccc---ccccccccccccchhhh
Q 043907          240 ----H-------------G----------------GCSEGYAYLILVLVCLCSSGYCYSW---GPLAWLVPSEIFPLEIR  283 (330)
Q Consensus       240 ----~-------------~----------------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~e~~p~~~r  283 (330)
                          .             .                ..+...........++.....+.+.   .++..+|+-|..+++..
T Consensus        96 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~s  175 (539)
T PF03137_consen   96 SYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNS  175 (539)
T ss_dssp             --------------------------------------------------------SSS---------------------
T ss_pred             ccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccC
Confidence                0             0                0001111112222222222223333   34677898999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHHHhhhhHH
Q 043907          284 SAGQSITVAVNFVFTFLTAQTFLPML  309 (330)
Q Consensus       284 ~~~~g~~~~~~~~~~~~~~~~~~~~~  309 (330)
                      +...|+......+|..+|=.+.+...
T Consensus       176 plYiGi~~~~~~lGPa~Gf~lg~~~L  201 (539)
T PF03137_consen  176 PLYIGILYAMSILGPALGFLLGSFCL  201 (539)
T ss_dssp             --------------------------
T ss_pred             ccchhhhhHHhhccHHHHHHHHHHHH
Confidence            99999999988888877766665544

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=96.37  E-value=0.089  Score=43.98  Aligned_cols=127  Identities=12%  Similarity=0.107  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHh-----CCCCCC---CcchhHHHHHHHHH
Q 043907          186 LSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQL-----GDHGGC---SEGYAYLILVLVCL  257 (330)
Q Consensus       186 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~---~~~~~~~~~~~~~~  257 (330)
                      +-..+..+...+.+....++.||+|-|+.+..+.....++..+.+.....+.     ...+..   .....+......-.
T Consensus       336 ~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~~  415 (498)
T KOG0637|consen  336 LGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYAI  415 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHHH
Confidence            4455666777788888889999999555555444433333333222211100     000000   01111111211122


Q ss_pred             hhcccccccccccccccccccch--hhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc
Q 043907          258 CSSGYCYSWGPLAWLVPSEIFPL--EIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK  313 (330)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~e~~p~--~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g  313 (330)
                      ...-.....+ +++...++....  .-+|...|+.+....+.+.+.....|.+.+..|
T Consensus       416 ~g~~~a~t~~-~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G  472 (498)
T KOG0637|consen  416 LGIPLAITFS-IPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFG  472 (498)
T ss_pred             hCCccccccc-cccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcC
Confidence            2212222222 233332211111  224666778888888888888888899888877

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=96.37  E-value=0.21  Score=41.73  Aligned_cols=149  Identities=9%  Similarity=0.012  Sum_probs=92.9

Q ss_pred             hHHHHHHHHHHHHhhhhHhHHHhHHHHH-Hh-cCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHH
Q 043907          146 QPVMAILIPFFQQVTGINIVGLYSPVLF-RT-LKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQML  223 (330)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~  223 (330)
                      .....+...++..   +-....+...++ +. .|+++++..--+.-...=..+...++...+.|.++.|++++++.+...
T Consensus         6 ~~~llc~~gf~~~---frPsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i   82 (412)
T PF01770_consen    6 ITLLLCLFGFFKE---FRPSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYI   82 (412)
T ss_pred             HHHHHHHHHHHHh---cCCCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            3444444444433   344455555555 33 688877655233334444566677788899999999999999888777


Q ss_pred             HHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHH
Q 043907          224 VSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQ  303 (330)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~  303 (330)
                      +...++.+.             +....+-+.-+..+...+.-.  ..+.++=...|+++--++.+......-.|.+++..
T Consensus        83 ~t~~lll~~-------------~sv~~mq~~q~~yg~~~a~ev--ay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~  147 (412)
T PF01770_consen   83 ITWLLLLFG-------------TSVLAMQLMQFFYGLATAAEV--AYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSL  147 (412)
T ss_pred             HHHHHHHHH-------------CcHHHHHHHHHHHHHHHHHHH--HHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            776666554             444444444444444433221  22233335567788888888888888888888888


Q ss_pred             hhhhHHhhc
Q 043907          304 TFLPMLCHF  312 (330)
Q Consensus       304 ~~~~~~~~~  312 (330)
                      ++..+....
T Consensus       148 lgQllvs~~  156 (412)
T PF01770_consen  148 LGQLLVSFG  156 (412)
T ss_pred             HHHHHHHhc
Confidence            877766543

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=96.25  E-value=0.0054  Score=51.94  Aligned_cols=68  Identities=16%  Similarity=0.156  Sum_probs=54.9

Q ss_pred             hhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHH
Q 043907          160 TGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVI  228 (330)
Q Consensus       160 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~  228 (330)
                      .....+...++.+.+++|+++.+.+ .+...--+..+++.+++|.++||+.+|+.++++..+..+....
T Consensus        25 ~~~g~l~pll~vy~kQLGl~p~~~G-tl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~f   92 (618)
T KOG3762|consen   25 ARFGSLFPLLAVYFKQLGLNPAVVG-TLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATF   92 (618)
T ss_pred             ecccccchHHHHHHHHcCCCHHHhh-hhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            3345566778888999999999999 8888889999999999999999998888777766655544333

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=96.15  E-value=0.031  Score=46.16  Aligned_cols=107  Identities=18%  Similarity=0.147  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHH-HHHHHHHHHHHHHhCCCCCCCc-chhHHHHHHHHHhhcccc
Q 043907          186 LSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQML-VSQVIIGSIMAAQLGDHGGCSE-GYAYLILVLVCLCSSGYC  263 (330)
Q Consensus       186 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  263 (330)
                      ...++..+...+-+++.|.++|+.|+||.......... ++.+.+.+.           ++ .+.+....+..+...++.
T Consensus        62 y~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i-----------~~~s~~~~~l~~~il~~i~~~  130 (438)
T COG2270          62 YASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFI-----------PPGSYLLLLLLFLILASIGFE  130 (438)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHh-----------CCCchHHHHHHHHHHHHHhcc
Confidence            56677788888888999999999998876655444443 334444443           33 334444444444444444


Q ss_pred             cccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHh
Q 043907          264 YSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQT  304 (330)
Q Consensus       264 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~  304 (330)
                      .... ...++..+..+++.-++..+.....+++++.+.-..
T Consensus       131 ~s~V-fyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~  170 (438)
T COG2270         131 FSNV-FYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIF  170 (438)
T ss_pred             hhhe-ehhhHhhhhcCccccCcccccccccccccchHHHHH
Confidence            3322 334666788888777888887777777777664433

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=96.13  E-value=0.0011  Score=53.42  Aligned_cols=116  Identities=8%  Similarity=-0.118  Sum_probs=2.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-CcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccc
Q 043907          187 SAVVAGGMGTVLAIISMILADKF-GRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYS  265 (330)
Q Consensus       187 ~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (330)
                      ....+.++-.+|+.+.++..-+. .+|.+. ...+.=.+..-++..+......+..+..-.+.+..++...+++...+ -
T Consensus       187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~-~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNG-y  264 (309)
T PF01733_consen  187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLW-ILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNG-Y  264 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhcchhcceeEecccccccHH-HHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccc-h
Confidence            46678889999998887642211 233333 22222222211222221100000000011233333333333333322 2


Q ss_pred             cccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHh
Q 043907          266 WGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQT  304 (330)
Q Consensus       266 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~  304 (330)
                      .......+..+..++++|..+-.+....-.+|-.+|..+
T Consensus       265 l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l  303 (309)
T PF01733_consen  265 LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL  303 (309)
T ss_dssp             --HHHH---------------------------------
T ss_pred             hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            233555666788888888877777666665555555544

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=95.95  E-value=0.0089  Score=48.00  Aligned_cols=55  Identities=31%  Similarity=0.375  Sum_probs=46.0

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHhhcccccccc
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFN--IYMLIFGRLLLGVGIGFGNQ   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~r~l~G~~~g~~~~   56 (330)
                      ++.|.++||+|||+.+..+......+.+..++.++  .+.+.+.|+.+|++.+...+
T Consensus        57 ~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  113 (338)
T COG0477          57 LLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLP  113 (338)
T ss_pred             hhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHH
Confidence            47899999999998888888776666677777766  89999999999999986666

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.75  E-value=0.33  Score=41.29  Aligned_cols=110  Identities=12%  Similarity=0.019  Sum_probs=84.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccc
Q 043907          183 SLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGY  262 (330)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (330)
                      +++....+......+.+++.+.+.|+++.|..+.++..........+..              .+.+.......+.+.+.
T Consensus        51 aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~--------------~N~y~~yfssallG~Ga  116 (461)
T KOG3098|consen   51 AGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF--------------PNSYYLYFSSALLGFGA  116 (461)
T ss_pred             ccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh--------------cchHHHHHHHHHhhhhH
Confidence            3435678888899999999999999999999999998888776666544              45667777778888887


Q ss_pred             ccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhh
Q 043907          263 CYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLP  307 (330)
Q Consensus       263 ~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~  307 (330)
                      +.-|..- -.+.+|..+++.+.+..++.-.....+-++|......
T Consensus       117 allw~Gq-G~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~  160 (461)
T KOG3098|consen  117 ALLWTGQ-GGYLTSNSTRETIERNISIFWAIGQSSLIIGGIILFI  160 (461)
T ss_pred             Hheeccc-ceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhhee
Confidence            7666543 4566899999999998888887777777766555433

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=95.74  E-value=1.1  Score=38.10  Aligned_cols=168  Identities=9%  Similarity=-0.050  Sum_probs=84.3

Q ss_pred             hhhhHhHHHhHHHHHHhcCC-CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHh
Q 043907          159 VTGINIVGLYSPVLFRTLKL-GESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQL  237 (330)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~  237 (330)
                      ..+.-...+-.+.++.+..- +--... .....-.+..++..+..|...||..|.+....+.+..-++...-........
T Consensus        15 ~w~dR~w~Fa~~L~L~~i~p~sLl~~s-iygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~   93 (432)
T PF06963_consen   15 TWGDRMWEFAVPLFLISIFPGSLLPVS-IYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLL   93 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555666666655421 222233 4455566777888888999999999998876665543332222111111111


Q ss_pred             CCCCCC--CcchhHHHHHHHHHhhccccccccc----cccccccccc--chhhhhhhhhHHHHHHHHHHHHHHHhhhhHH
Q 043907          238 GDHGGC--SEGYAYLILVLVCLCSSGYCYSWGP----LAWLVPSEIF--PLEIRSAGQSITVAVNFVFTFLTAQTFLPML  309 (330)
Q Consensus       238 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~e~~--p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~  309 (330)
                      ......  +.......+......+.........    +---.+..+.  +++.....++...-.-.+...++|.+.|.+.
T Consensus        94 ~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~  173 (432)
T PF06963_consen   94 SYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLM  173 (432)
T ss_pred             hCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            111110  0111222222222221111111110    1001111122  4556667777777777788999999999998


Q ss_pred             hhcc-chhHHHHHHHHHHh
Q 043907          310 CHFK-AGIFFFFGGLVLIM  327 (330)
Q Consensus       310 ~~~g-~~~~~~~~~~~~~~  327 (330)
                      +..+ .....+.++.+++.
T Consensus       174 t~~s~~~~~~~i~~~N~~S  192 (432)
T PF06963_consen  174 TFASPVIAAIFIAGWNLAS  192 (432)
T ss_pred             hccCHHHHHHHHHHHHHHH
Confidence            8776 34445555555544

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG2881 consensus Predicted membrane protein [Function unknown]

Probab=95.64  E-value=0.72  Score=35.30  Aligned_cols=35  Identities=20%  Similarity=0.270  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHH
Q 043907          192 GGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQ  226 (330)
Q Consensus       192 ~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~  226 (330)
                      .++..+..+-+-.++.|+..|++.+.+.+++.+..
T Consensus       250 ~lCT~lAVigGk~lAskIS~rtVt~~ggi~Fi~Fg  284 (294)
T KOG2881|consen  250 ALCTGLAVIGGKYLASKISVRTVTLIGGILFIIFG  284 (294)
T ss_pred             HHHHHHHHhhhHHHhhhheeEEEEEecchhHHHHH
Confidence            34444444445577889999988887776665543

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=95.56  E-value=0.012  Score=45.31  Aligned_cols=63  Identities=24%  Similarity=0.227  Sum_probs=43.4

Q ss_pred             HhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHH
Q 043907          163 NIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQ  226 (330)
Q Consensus       163 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~  226 (330)
                      +....|.-++++.+|+...+.+ .+........++...+.|-++||.|||+..+.-.+...+++
T Consensus        54 WLQgPYvYyLYstYgFgkG~Ig-qLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC  116 (454)
T KOG4332|consen   54 WLQGPYVYYLYSTYGFGKGDIG-QLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC  116 (454)
T ss_pred             hhcCceeeeeehhcCccCCccc-eeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH
Confidence            3333444455677888888888 66666666667777888899999999997665544444443

>TIGR01272 gluP glucose/galactose transporter

Probab=95.24  E-value=0.042  Score=44.46  Aligned_cols=54  Identities=15%  Similarity=0.027  Sum_probs=39.5

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~   56 (330)
                      ++.+++.||+|+||.+.++..+..++.++....++... ...-++.|++.+..+|
T Consensus       196 ~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P  249 (310)
T TIGR01272       196 FIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFP  249 (310)
T ss_pred             HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHH
Confidence            45789999999999998888888877766655444332 2344577888888877

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.93  E-value=0.31  Score=43.81  Aligned_cols=161  Identities=12%  Similarity=-0.023  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHH
Q 043907          147 PVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQ  226 (330)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~  226 (330)
                      .+.+..+..+.+......+..-...+-+++++++.+.+ ++....-++..+...+..+...|..|-+.+-.+.++++++.
T Consensus        98 fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG-~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgs  176 (735)
T KOG3626|consen   98 FLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSG-LIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGS  176 (735)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcce-eEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHH
Confidence            33444444444433333344444555577899999988 88899999999999999999999888888899999999998


Q ss_pred             HHHHHHHHHHhC------------CCC--------------------CCC---cchh--HHHHHHH--HHhhcccccccc
Q 043907          227 VIIGSIMAAQLG------------DHG--------------------GCS---EGYA--YLILVLV--CLCSSGYCYSWG  267 (330)
Q Consensus       227 ~~~~~~~~~~~~------------~~~--------------------~~~---~~~~--~~~~~~~--~~~~~~~~~~~~  267 (330)
                      ++..+--.....            +.+                    ...   ....  .+.+.+.  .+.+.| ..-..
T Consensus       177 ll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG-~Tpi~  255 (735)
T KOG3626|consen  177 LLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIG-ATPIF  255 (735)
T ss_pred             HHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcC-CCCCc
Confidence            887765222000            000                    000   0111  2222222  222222 22333


Q ss_pred             cccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHH
Q 043907          268 PLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPML  309 (330)
Q Consensus       268 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~  309 (330)
                      ++...|+-|...++.-....|+...+..+|.++|-.+++...
T Consensus       256 tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l  297 (735)
T KOG3626|consen  256 TLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCL  297 (735)
T ss_pred             cCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            566788888888888899999999998888888877777654

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=94.92  E-value=0.13  Score=43.68  Aligned_cols=42  Identities=12%  Similarity=-0.051  Sum_probs=33.0

Q ss_pred             ccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhc
Q 043907          271 WLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHF  312 (330)
Q Consensus       271 ~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  312 (330)
                      .++-+.+..|..-||.+.+.|+..++|+---..+.-++.|..
T Consensus       427 ~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~f  468 (544)
T PF13000_consen  427 MAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYF  468 (544)
T ss_pred             HHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhc
Confidence            445578888999999999999999999877666666666543

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=94.78  E-value=1.4  Score=39.03  Aligned_cols=36  Identities=11%  Similarity=0.074  Sum_probs=30.0

Q ss_pred             cccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhh
Q 043907          276 EIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCH  311 (330)
Q Consensus       276 e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~  311 (330)
                      +-+|++.|+.++++......+|..+...+.......
T Consensus       485 ~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~  520 (571)
T KOG1237|consen  485 SQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFS  520 (571)
T ss_pred             hhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            457999999999999999999999998888655443

>PRK03612 spermidine synthase; Provisional

Probab=94.45  E-value=1.7  Score=38.17  Aligned_cols=43  Identities=14%  Similarity=0.165  Sum_probs=29.6

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHhhhhHHh-hcc-chhHHHHHHHHH
Q 043907          283 RSAGQSITVAVNFVFTFLTAQTFLPMLC-HFK-AGIFFFFGGLVL  325 (330)
Q Consensus       283 r~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~  325 (330)
                      -+...|-.+....+|+.+++.+.+.+.- ..| ..+.++.+.+.+
T Consensus       143 ~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~  187 (521)
T PRK03612        143 LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNL  187 (521)
T ss_pred             hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            3566777888899999999999887654 566 445445444443

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=94.03  E-value=3.1  Score=34.78  Aligned_cols=59  Identities=10%  Similarity=-0.038  Sum_probs=29.9

Q ss_pred             hhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhh
Q 043907          247 YAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLP  307 (330)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~  307 (330)
                      +.++......+++...+ -.......+..+..|++++-.+-.+....- .++.....+.++
T Consensus       342 ~~~~~~~l~~~lglsnG-Yltsl~m~~aPk~v~~~e~e~aG~~m~~fl-~~Gl~~G~~~s~  400 (406)
T KOG1479|consen  342 SDGWFIFLMSLLGLSNG-YLTSLIMMYAPKQVKPSEKEAAGNLMVFFL-VGGLALGSLLSW  400 (406)
T ss_pred             CchHHHHHHHHHHhccc-hHhhheehhcCCCCChHHHHHHHHHHHHHH-HHHHHHhhHHHH
Confidence            33444444444433322 223455667778888877766555555444 334333333333

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=93.76  E-value=0.21  Score=41.66  Aligned_cols=109  Identities=11%  Similarity=-0.047  Sum_probs=63.0

Q ss_pred             hhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchh---hhhhhhhH
Q 043907          213 VLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLE---IRSAGQSI  289 (330)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~r~~~~g~  289 (330)
                      +.+..+.++..++.+++.+.....   . ..+........+...+...|.+ +.-|....+.+|.++++   .|.+.+..
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~---~-~~~~~~~~~~~~gL~lia~G~G-~~K~ni~~~~~dq~~~~~~~~~~~~F~~   76 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPP---S-LPSGIQLGLFYIGLALIAVGTG-GIKPNISPFGADQYDEDDDSRRDSFFNW   76 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSS---S-C------CHHHHHHHHHHHHHH-CCHHHHHHHHHHCSSTTTTTHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcc---h-hhhhHHHHHHHHHHHHHHhccc-cccccHHHHHHHHhcccchhhhhhhHHH
Confidence            345667777777777765543110   0 0011112333333444333433 33455556667777654   56778888


Q ss_pred             HHHHHHHHHHHHHHhhhhHHhhccc-hhHHHHHHHHHH
Q 043907          290 TVAVNFVFTFLTAQTFLPMLCHFKA-GIFFFFGGLVLI  326 (330)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~  326 (330)
                      .+...++|+.++....+++-++.|| ..|.+.++..++
T Consensus        77 fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~  114 (372)
T PF00854_consen   77 FYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLL  114 (372)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHH
Confidence            8999999999999999999999996 455554444443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=93.48  E-value=0.14  Score=36.53  Aligned_cols=54  Identities=28%  Similarity=0.307  Sum_probs=43.8

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~   56 (330)
                      ++.+.+.++.|.|+.++++.+.+.+-.... +-++.+.++.+-.+.|++.+..+.
T Consensus        55 l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~  108 (156)
T PF05978_consen   55 LFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWT  108 (156)
T ss_pred             HhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhH
Confidence            466788899999999999999888655543 567788889999999999887665

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF12832 MFS_1_like: MFS_1 like family

Probab=93.45  E-value=0.043  Score=33.70  Aligned_cols=23  Identities=17%  Similarity=0.369  Sum_probs=18.6

Q ss_pred             cchhhhhhhhchhHHHHHHHHHH
Q 043907            2 LIASSVTRAIGRKVSILIGGVAF   24 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~   24 (330)
                      +++|.++||+||++..+......
T Consensus        53 pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen   53 PLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHCccHHHHHHHHHH
Confidence            68999999999988887665543

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=93.43  E-value=5.4  Score=35.53  Aligned_cols=146  Identities=14%  Similarity=0.087  Sum_probs=85.5

Q ss_pred             HhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH-hCcchhhhHhhHHHHHHHHHHHHHHHHHhCCC-----
Q 043907          167 LYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADK-FGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDH-----  240 (330)
Q Consensus       167 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  240 (330)
                      ....++...++.+...+. -.............+++++++|. +||-+.+.++..+...+..++........-..     
T Consensus        59 nlv~ylt~~~~~~~~~aa-~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~  137 (571)
T KOG1237|consen   59 NLVTYLTLELHASGGGAA-NNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKF  137 (571)
T ss_pred             HHHHHHHHHhccchHHHH-HHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccC
Confidence            333444456677665555 55566666777778899999998 58888888888888888766665543321110     


Q ss_pred             ---C-CCCcch--h-HHHHHHHHHhhcccccccccccccccccccc----hhhhh--hhhhHHHHHHHHHHHHHHHhhhh
Q 043907          241 ---G-GCSEGY--A-YLILVLVCLCSSGYCYSWGPLAWLVPSEIFP----LEIRS--AGQSITVAVNFVFTFLTAQTFLP  307 (330)
Q Consensus       241 ---~-~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p----~~~r~--~~~g~~~~~~~~~~~~~~~~~~~  307 (330)
                         + ..+...  . ............+ ..+.-|....+-+|-++    .+.+.  .-+.......+.+..++..+..+
T Consensus       138 ~~~~~~c~~~s~~q~~~~~~~l~lia~G-~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vy  216 (571)
T KOG1237|consen  138 KPGGNVCESPSKLQLAVLYGALYLIALG-AGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVY  216 (571)
T ss_pred             CCCCCcccCcchHHHHHHHHHHHHheec-cCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHh
Confidence               0 011111  1 1222222222222 23444554555566666    33333  56667777788888888888877


Q ss_pred             HHhhccc
Q 043907          308 MLCHFKA  314 (330)
Q Consensus       308 ~~~~~g~  314 (330)
                      .-++.+|
T Consensus       217 iq~~~~w  223 (571)
T KOG1237|consen  217 IQDNVGW  223 (571)
T ss_pred             hhhcccc
Confidence            7677765

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=93.36  E-value=4.9  Score=34.80  Aligned_cols=33  Identities=15%  Similarity=0.067  Sum_probs=25.4

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhh
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSA   34 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~   34 (330)
                      ++.+++++|++|++.+.+....+....++.++.
T Consensus        62 ~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~v   94 (472)
T TIGR00769        62 LIYTKLSNILSKEALFYTVISPFLGFFALFAFV   94 (472)
T ss_pred             HHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHH
Confidence            456889999999999988777776666665554

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=93.09  E-value=0.37  Score=40.22  Aligned_cols=69  Identities=20%  Similarity=0.347  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhh--h-h------HHHHHHHHHHhhcccccccc-----------------------------
Q 043907           15 VSILIGGVAFLADSAYGGSA--F-N------IYMLIFGRLLLGVGIGFGNQ-----------------------------   56 (330)
Q Consensus        15 ~~l~~~~~~~~~~~~~~~~~--~-~------~~~~~~~r~l~G~~~g~~~~-----------------------------   56 (330)
                      |.+.++.++..+|.++..++  + .      ...+.++-.+.++|.|+.-+                             
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            56788888888888884443  2 2      25788888899999998766                             


Q ss_pred             -------------ccCccchHHHHHhhhHHHHHHHHHHhh
Q 043907           57 -------------IKGGWGWRISLAMAAAPASILTIGAIF   83 (330)
Q Consensus        57 -------------~~~~~~wr~~~~~~~~~~~~~~~~~~~   83 (330)
                                   +.++.+|.+.|.+.++..++..+..+.
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~  121 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS  121 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence                         566789999999988777666555443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=92.99  E-value=3.2  Score=36.10  Aligned_cols=117  Identities=11%  Similarity=0.073  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCC----------CCcch--------hHHHHHHH
Q 043907          194 MGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGG----------CSEGY--------AYLILVLV  255 (330)
Q Consensus       194 ~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~--------~~~~~~~~  255 (330)
                      +.++...+..+++++++|.+++-...........++++..+.....-++          .++..        .|......
T Consensus        71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY  150 (491)
T PF03219_consen   71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY  150 (491)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence            4455567788999999999987776666666666665543211100000          00111        11111111


Q ss_pred             HHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHh
Q 043907          256 CLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLC  310 (330)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~  310 (330)
                      +..-.-.+...+-+.|.+.+|.++.++..+..++....++++..+++.+...+.+
T Consensus       151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111111122233567888999999999999999999999999999999888777

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=90.61  E-value=1.1  Score=35.76  Aligned_cols=51  Identities=10%  Similarity=0.037  Sum_probs=36.7

Q ss_pred             hhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc
Q 043907            6 SVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ   56 (330)
Q Consensus         6 ~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~   56 (330)
                      ...||+---.-..+..++.+.+.++.+++++.++-+.+-.+..++.|.-..
T Consensus        84 ff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEi  134 (409)
T KOG3880|consen   84 FFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEI  134 (409)
T ss_pred             hhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCccee
Confidence            344554333334556677788888899999999988888888888777655

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=90.05  E-value=6.4  Score=33.87  Aligned_cols=126  Identities=10%  Similarity=-0.049  Sum_probs=75.0

Q ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCC-----------CCcc-------
Q 043907          186 LSAVVAGG-MGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGG-----------CSEG-------  246 (330)
Q Consensus       186 ~~~~~~~~-~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~-------  246 (330)
                      .+-+..-+ +.++..++..++.+++.|.+++-..........+++++..+......++           .++.       
T Consensus        65 FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili  144 (509)
T COG3202          65 FLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILI  144 (509)
T ss_pred             HHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEe
Confidence            34444444 5667777888888999988887776666666666666554311100000           0100       


Q ss_pred             -hhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhh
Q 043907          247 -YAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCH  311 (330)
Q Consensus       247 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~  311 (330)
                       +.|.........-.-.+...+-+.|...+|+...++..+-.++.+...+++..+++.+..++.++
T Consensus       145 ~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~  210 (509)
T COG3202         145 VGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH  210 (509)
T ss_pred             ecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence             01111111111111111222235567778999999999999999999999999998888887664

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=88.83  E-value=13  Score=31.28  Aligned_cols=57  Identities=9%  Similarity=-0.087  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 043907          147 PVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMIL  205 (330)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l  205 (330)
                      ..+.+++.........+.+.+-.+++.+++-.+.. +. .......+...+...+...+
T Consensus        19 v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~-~~-~F~~~~~~~a~i~~ll~~~~   75 (406)
T KOG1479|consen   19 VYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN-SK-NFTSSYTLAAQIPLLLFNLL   75 (406)
T ss_pred             HHHHHHHHhcccccchHhhhccHHHHHhhcCCCch-HH-HHHHHHHHHHHHHHHHHHHH
Confidence            34444455555556667777777777766533333 22 33444444444444444333

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=85.30  E-value=8.4  Score=32.20  Aligned_cols=63  Identities=17%  Similarity=0.361  Sum_probs=36.7

Q ss_pred             HHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH-----HhCcchhhhH
Q 043907          151 ILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILAD-----KFGRKVLFLV  217 (330)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----~~grr~~~~~  217 (330)
                      ..+....+........ ..|.+++.-|.+-++.+ ......  --.---++..+++|     |+||||..++
T Consensus        36 Ll~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a-~fS~ay--~P~sLKllWaPiVDs~y~k~~GrrksWvv  103 (510)
T KOG3574|consen   36 LLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQA-IFSFAY--WPFSLKLLWAPIVDSVYSKRFGRRKSWVV  103 (510)
T ss_pred             HHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhh-hhhhhh--hHHHHHHHHHhhhHHHHHHhhccccceee
Confidence            3344444555555444 78989887777666555 222221  11223466777788     8999987543

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=82.60  E-value=33  Score=30.09  Aligned_cols=41  Identities=15%  Similarity=0.304  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHH
Q 043907          187 SAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQV  227 (330)
Q Consensus       187 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~  227 (330)
                      .....++..++..++++.+.+|+|=+....+.-+.+.+..+
T Consensus       324 ~~~~tGivtii~~~l~~~iir~~GW~~~AlitPiv~lit~~  364 (491)
T PF03219_consen  324 FSSWTGIVTIIMMFLSSNIIRRFGWRTAALITPIVILITGL  364 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHH
Confidence            44556667777778888999999988776665554444443

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=80.52  E-value=2.5  Score=26.50  Aligned_cols=38  Identities=13%  Similarity=0.130  Sum_probs=30.9

Q ss_pred             chhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 043907            3 IASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYML   40 (330)
Q Consensus         3 ~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~   40 (330)
                      ...++.++..+++.+..+.+...+..+.+++.++.+..
T Consensus        46 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w   83 (85)
T PF06779_consen   46 LASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW   83 (85)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence            44566677777889999999999999999998887654

Note that many members are hypothetical proteins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	330
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		6e-21

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score = 98.2 bits (243), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 138/289 (47%), Gaps = 37/289 (12%)
Query: 34  AFNIYMLIFGRLLL-GVGIGFGNQIKGGW----GWRISLAMAAAPASILTIGAIFLPETP 88
           +FN + +IFG+LL+  V           W    GWR   A    PA +  +    +PE+P
Sbjct: 165 SFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESP 224
Query: 89  NSKIQRSDDHQKAQKMLQRIRG-------ISDVKAELNDLIRASSTSKSITQPFKNIIQR 141
              + R    Q A+ +L++I G       + ++K  L+       T   +      +I  
Sbjct: 225 RWLMSRGKQEQ-AEGILRKIMGNTLATQAVQEIKHSLD---HGRKTGGRLLMFGVGVI-- 278
Query: 142 KYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSL-LLSAVVAGGMGTVLAI 200
                 V+ +++  FQQ  GIN+V  Y+P +F+TL  G ST + LL  ++ G +     +
Sbjct: 279 ------VIGVMLSIFQQFVGINVVLYYAPEVFKTL--GASTDIALLQTIIVGVINLTFTV 330
Query: 201 ISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSS 260
           ++++  DKFGRK L ++G + M +    +G+    Q       + G   L+ +L  + + 
Sbjct: 331 LAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ-------APGIVALLSMLFYVAA- 382
Query: 261 GYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPML 309
            +  SWGP+ W++ SEIFP  IR    +I VA  ++  +  + TF PM+
Sbjct: 383 -FAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTF-PMM 429

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	330
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.97
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.95
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.92
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.92
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.89
2xut_A	524	Proton/peptide symporter family protein; transport	99.8
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.58
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.56
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.49
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.47
2xut_A	524	Proton/peptide symporter family protein; transport	99.41
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.13
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.99
2g9p_A	26	Antimicrobial peptide latarcin 2A; helix-hinge-hel	83.85

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=1.4e-38  Score=271.82  Aligned_cols=313  Identities=23%  Similarity=0.430  Sum_probs=242.9

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHh------------------hhhhHHHHHHHHHHhhcccccccc-------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGG------------------SAFNIYMLIFGRLLLGVGIGFGNQ-------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~------------------~~~~~~~~~~~r~l~G~~~g~~~~-------   56 (330)
                      +++|+++||+|||+++.++.+++.+++++++                  +++|+++++++|+++|++.|...+       
T Consensus        73 ~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~  152 (491)
T 4gc0_A           73 ALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIA  152 (491)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999998                  478999999999999999998766       


Q ss_pred             ----------------------------------------ccCccchHHHHHhhhHHHHHHHHHHhhcCCCchhhhccCC
Q 043907           57 ----------------------------------------IKGGWGWRISLAMAAAPASILTIGAIFLPETPNSKIQRSD   96 (330)
Q Consensus        57 ----------------------------------------~~~~~~wr~~~~~~~~~~~~~~~~~~~~pesp~~~~~~~~   96 (330)
                                                              .....+||+.+.+..++.++..+..+++||||+|+..+++
T Consensus       153 E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~  232 (491)
T 4gc0_A          153 ELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGK  232 (491)
T ss_dssp             TTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTC
T ss_pred             hhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCc
Confidence                                                    1123578999999999888888888999999999999999


Q ss_pred             cHHHHHHHHHHHhcccchhHHHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhc
Q 043907           97 DHQKAQKMLQRIRGISDVKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRTL  176 (330)
Q Consensus        97 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (330)
                       .|++++.+++..++++.+++..+.++..+++++.. ....   ....++.........+.+..+.+....|.|.+.+..
T Consensus       233 -~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (491)
T 4gc0_A          233 -QEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTG-GRLL---MFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTL  307 (491)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-THHH---HSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             -hhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhh-hHHH---HhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhc
Confidence             99999988887765544433333322222211111 1111   223345566677777777888888999999999988


Q ss_pred             CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHH
Q 043907          177 KLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVC  256 (330)
Q Consensus       177 g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (330)
                      +.+..... ......++...++.++.+++.||+|||+.++.+...+.++.+.+.....         .....+.......
T Consensus       308 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~~~~~~~  377 (491)
T 4gc0_A          308 GASTDIAL-LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY---------TQAPGIVALLSML  377 (491)
T ss_dssp             SCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH---------TTCCHHHHHHHHH
T ss_pred             CCCccchh-hHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh---------cccchHHHHHHHH
Confidence            88877777 7778888999999999999999999999999988888887777665432         1233344455555


Q ss_pred             HhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhc------c-chhHHHHHHHHHHhhc
Q 043907          257 LCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHF------K-AGIFFFFGGLVLIMTS  329 (330)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~------g-~~~~~~~~~~~~~~~~  329 (330)
                      .+..+++.+++++.+.+.+|++|++.|+++.|+.+..+++++++++.+.+.+.+..      + ...|++++++++++.+
T Consensus       378 ~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i  457 (491)
T 4gc0_A          378 FYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAAL  457 (491)
T ss_dssp             HHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence            55666677788888899999999999999999999999999999999988765432      2 3567788877776543

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.97  E-value=5.9e-30  Score=216.16  Aligned_cols=294  Identities=14%  Similarity=0.082  Sum_probs=201.7

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHhhcccccccc---------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGS----AFNIYMLIFGRLLLGVGIGFGNQ---------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~r~l~G~~~g~~~~---------------------   56 (330)
                      +++|+++||+|||+++.++.++.+++.+++++    ++|++.++++|+++|++.+...+                     
T Consensus        80 ~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~  159 (451)
T 1pw4_A           80 FIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSV  159 (451)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred             HhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHH
Confidence            57899999999999999999999999999999    99999999999999999997766                     


Q ss_pred             ------------------ccCccc-hHHHHHhhhHHHHHHHH-HHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhH
Q 043907           57 ------------------IKGGWG-WRISLAMAAAPASILTI-GAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKA  116 (330)
Q Consensus        57 ------------------~~~~~~-wr~~~~~~~~~~~~~~~-~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~  116 (330)
                                        +.+..+ ||+.|++.++..++..+ ..+++||+|+....+++ +++.          ++.+.
T Consensus       160 ~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----------~~~~~  228 (451)
T 1pw4_A          160 WNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-EEYK----------NDYPD  228 (451)
T ss_dssp             HHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-TTTC----------CC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-hhhc----------ccccc
Confidence                              344567 99999998877766544 45668998875322211 1000          00000


Q ss_pred             HHHHHHHhccccccCccc--hHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHh-cCCCCchhhHHHHHHHHH
Q 043907          117 ELNDLIRASSTSKSITQP--FKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRT-LKLGESTSLLLSAVVAGG  193 (330)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~  193 (330)
                      +   .+++ ++++....+  .++.++    ++.++...+..+...........+.|.++++ .|+++.+.+ .......+
T Consensus       229 ~---~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~  299 (451)
T 1pw4_A          229 D---YNEK-AEQELTAKQIFMQYVLP----NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSS-WAYFLYEY  299 (451)
T ss_dssp             --------------CCTHHHHHHTSS----CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHH-HHHHHHHH
T ss_pred             c---chhh-hhcccccccchHHHHHc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHH
Confidence            0   0000 000111111  233332    2344444444555555667778888998876 799998888 88899999


Q ss_pred             HHHHHHHHHHHHHHHh--CcchhhhHhhHHHH-HHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccccccccc
Q 043907          194 MGTVLAIISMILADKF--GRKVLFLVGGMQML-VSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLA  270 (330)
Q Consensus       194 ~~~~~~~~~g~l~d~~--grr~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (330)
                      +.+++.++.+++.||+  |||+.+..+..+.. ++.+.+...           +..+.+.........+.+.+. ..+..
T Consensus       300 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~g~~~~~-~~~~~  367 (451)
T 1pw4_A          300 AGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN-----------PAGNPTVDMICMIVIGFLIYG-PVMLI  367 (451)
T ss_dssp             HHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC-----------CTTCHHHHHHHHHHHHHHHTH-HHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh-----------cccCHHHHHHHHHHHHHHHhc-hHHHH
Confidence            9999999999999999  99988877666555 333333221           112333333444444333332 23344


Q ss_pred             ccccccccchhhhhhhhhHHHHHHHH-HHHHHHHhhhhHHhhccc-hhHHHHHHHHHHh
Q 043907          271 WLVPSEIFPLEIRSAGQSITVAVNFV-FTFLTAQTFLPMLCHFKA-GIFFFFGGLVLIM  327 (330)
Q Consensus       271 ~~~~~e~~p~~~r~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~  327 (330)
                      ..+..|.+|++.|+++.|+.+....+ +..++|.+.+.+.+..|+ ..+++.+++++++
T Consensus       368 ~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~  426 (451)
T 1pw4_A          368 GLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILA  426 (451)
T ss_dssp             HHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            56778999999999999999999999 999999999999999884 5666666555544

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.95  E-value=3.8e-26  Score=192.13  Aligned_cols=269  Identities=10%  Similarity=0.069  Sum_probs=187.8

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHhhcccccccc----------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYG---GSAFNIYMLIFGRLLLGVGIGFGNQ----------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~r~l~G~~~g~~~~----------------------   56 (330)
                      +++|+++||+|||+++..+.++.+++.+++   +++++++.++++|+++|++.|...+                      
T Consensus        79 ~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  158 (438)
T 3o7q_A           79 IPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLA  158 (438)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred             HhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHH
Confidence            578999999999999999999999999999   8889999999999999999998776                      


Q ss_pred             -----------------cc-Cccc-------------------------hHHHHHhhhHHHHHHHHHHhh--cCCCchhh
Q 043907           57 -----------------IK-GGWG-------------------------WRISLAMAAAPASILTIGAIF--LPETPNSK   91 (330)
Q Consensus        57 -----------------~~-~~~~-------------------------wr~~~~~~~~~~~~~~~~~~~--~pesp~~~   91 (330)
                                       +. +..+                         ||+.|++.+...++..+..++  .||+++. 
T Consensus       159 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-  237 (438)
T 3o7q_A          159 QTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD-  237 (438)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT-
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc-
Confidence                             22 3233                         999998777665554444333  4555431 


Q ss_pred             hccCCcHHHHHHHHHHHhcccchhHHHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHH
Q 043907           92 IQRSDDHQKAQKMLQRIRGISDVKAELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPV  171 (330)
Q Consensus        92 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (330)
                        +++ +                           +++++.+.++++.++++..+.    ..+..+...........+.|.
T Consensus       238 --~~~-~---------------------------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  283 (438)
T 3o7q_A          238 --NHS-D---------------------------AKQGSFSASLSRLARIRHWRW----AVLAQFCYVGAQTACWSYLIR  283 (438)
T ss_dssp             --CCC-C---------------------------SSTTSHHHHHHHHTTCSHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred             --ccc-c---------------------------ccccchhhhHHHHHhChHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence              001 0                           011111234555555433332    223333333445666778888


Q ss_pred             H-HHhc-CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhH
Q 043907          172 L-FRTL-KLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAY  249 (330)
Q Consensus       172 ~-~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (330)
                      + .++. |.++.+.+ .......++.+++.++.+++.||+|||+.+..+..+..++.+.+...             +..+
T Consensus       284 ~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~  349 (438)
T 3o7q_A          284 YAVEEIPGMTAGFAA-NYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA-------------GGHV  349 (438)
T ss_dssp             HHHHHSTTCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-------------CHHH
T ss_pred             HhhhccCCcchhHHH-HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc-------------CCcH
Confidence            8 7664 99998888 88888999999999999999999999999988887777766555442             2222


Q ss_pred             HHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhcc-c-hhHHHHHHH
Q 043907          250 LILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFK-A-GIFFFFGGL  323 (330)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~-~~~~~~~~~  323 (330)
                       ......+.+.+.+.. .+....+..|.+|++ ++++.++.. .+.+++.++|.+.+.+.|..| + ..|++.+++
T Consensus       350 -~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~  421 (438)
T 3o7q_A          350 -GLIALTLCSAFMSIQ-YPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALC  421 (438)
T ss_dssp             -HHHHHHHHHHHHTTH-HHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHH
T ss_pred             -HHHHHHHHHHHHHHH-HHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence             222333344444433 345566667889976 888888877 677999999999999999988 5 444444333

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.92  E-value=1e-26  Score=191.61  Aligned_cols=274  Identities=17%  Similarity=0.184  Sum_probs=185.3

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc-------------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ-------------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~-------------------------   56 (330)
                      ++.|+++||+|||+++..+..+..++.+..++++|++.+++.|+++|++.+...+                         
T Consensus        53 ~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (375)
T 2gfp_A           53 LFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMG  132 (375)
T ss_dssp             TTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHH
T ss_pred             HHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHH
Confidence            6789999999999999999999999999999999999999999999999997665                         


Q ss_pred             --------------ccCccchHHHHHhhhHHHHHHHH-HHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhHHHHHH
Q 043907           57 --------------IKGGWGWRISLAMAAAPASILTI-GAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKAELNDL  121 (330)
Q Consensus        57 --------------~~~~~~wr~~~~~~~~~~~~~~~-~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  121 (330)
                                    +.+..+||+.|.+.++..++..+ ..+++||+|+..   ++                         
T Consensus       133 ~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------------------------  184 (375)
T 2gfp_A          133 ILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVD---AP-------------------------  184 (375)
T ss_dssp             HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT---CC-------------------------
T ss_pred             HHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCC---cc-------------------------
Confidence                          55557899999988877666555 345578876421   01                         


Q ss_pred             HHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHh-cCCCCchhhHHHHHHHHHHHHHHHH
Q 043907          122 IRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRT-LKLGESTSLLLSAVVAGGMGTVLAI  200 (330)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~  200 (330)
                            +++.+.++++.++++.    +....+..+...........+.|.+.++ .|.++.+.+ .......++.+++.+
T Consensus       185 ------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~  253 (375)
T 2gfp_A          185 ------RTRLLTSYKTLFGNSG----FNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVS-ILFILPIPAAFFGAW  253 (375)
T ss_dssp             ------CCCTTTCSTHHHHHHH----HHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHH-HHHHTHHHHHHHHHH
T ss_pred             ------cccHHHHHHHHhcCcc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHH
Confidence                  0111223444444322    2223333333344455666777777655 788888888 888888999999999


Q ss_pred             HHHHHHHHhCcchhhhHhhHH-HHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccc
Q 043907          201 ISMILADKFGRKVLFLVGGMQ-MLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFP  279 (330)
Q Consensus       201 ~~g~l~d~~grr~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p  279 (330)
                      +.+++.||.+++.  ..+... ...+...+.....         ++.+.+.......+.+.+.+.. .+....+..|..|
T Consensus       254 ~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~p  321 (375)
T 2gfp_A          254 FAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWF---------GVMNVWTLLVPAALFFFGAGML-FPLATSGAMEPFP  321 (375)
T ss_dssp             HHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHH---------HHHHHHHHHHHHHHHHHHHHHT-SSTTHHHHHTHHH
T ss_pred             HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhh---------ccccHHHHHHHHHHHHHHHHHh-hHHHHHHHHHhCC
Confidence            9999999988732  222222 2222111111100         0123333334444444444433 3455666789998


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccchhHHHHHHHHHHh
Q 043907          280 LEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIM  327 (330)
Q Consensus       280 ~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  327 (330)
                       ++|+++.|+.+....++..++|.+.+.+.+..++...+...++++++
T Consensus       322 -~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~  368 (375)
T 2gfp_A          322 -FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMGLLI  368 (375)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHH
Confidence             89999999999999999999999999998877655444444444443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.92  E-value=7.3e-24  Score=180.82  Aligned_cols=316  Identities=15%  Similarity=0.083  Sum_probs=183.6

Q ss_pred             cchhhhhhh-hchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcccccccc------------------------
Q 043907            2 LIASSVTRA-IGRKVSILIGGVAFLADSAYGGSAFNIYMLIFGRLLLGVGIGFGNQ------------------------   56 (330)
Q Consensus         2 ~~~g~l~d~-~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~------------------------   56 (330)
                      +++|+++|| +|||+++..+.++..++.+++++++|++.++++|+++|++.|...+                        
T Consensus        72 ~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  151 (491)
T 4aps_A           72 TIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIF  151 (491)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHH
T ss_pred             HHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHH
Confidence            578999999 8999999999999999999999999999999999999999998776                        


Q ss_pred             -----------------ccCccchHHHHHhhhHHHHHHHHHHhh-cCCCchh---hhccCCcHHHHHHHHHH--------
Q 043907           57 -----------------IKGGWGWRISLAMAAAPASILTIGAIF-LPETPNS---KIQRSDDHQKAQKMLQR--------  107 (330)
Q Consensus        57 -----------------~~~~~~wr~~~~~~~~~~~~~~~~~~~-~pesp~~---~~~~~~~~~~a~~~~~~--------  107 (330)
                                       +.+..|||+.|++.++..++..+..++ .|+..+.   ..++.++.++.++..+.        
T Consensus       152 ~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~  231 (491)
T 4aps_A          152 VFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGF  231 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHH
Confidence                             445578999999987766555444332 2221100   00111113333332221        


Q ss_pred             --------HhcccchhHHHHHHH---------HhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHH
Q 043907          108 --------IRGISDVKAELNDLI---------RASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSP  170 (330)
Q Consensus       108 --------~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (330)
                              ..+..+.++......         ...+..++.+.+  ...+++.. . .....+........+.....+.|
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~  307 (491)
T 4aps_A          232 IAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVT--STEHLRVV-S-YIPLFIAAVLFWAIEEQGSVVLA  307 (491)
T ss_dssp             HHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC--------------CT-T-HHHHHHHHHHHHHHHGGGGTHHH
T ss_pred             HHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhccccc--HHHHHHHH-H-HHHHHHHHHHHHHHHhhccHHHH
Confidence                    011111111000000         000000000000  00111111 1 11122222222233344455666


Q ss_pred             HHHHh-cCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhh-----HhhHHHHHHHHHHHHHHHHHhCCCCCCC
Q 043907          171 VLFRT-LKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFL-----VGGMQMLVSQVIIGSIMAAQLGDHGGCS  244 (330)
Q Consensus       171 ~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (330)
                      .+.++ .+.+..+.+ .......+...++.++.+++.||++||+...     .+..+.+++.+.+.......  .  ..+
T Consensus       308 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~  382 (491)
T 4aps_A          308 TFAAERVDSSWFPVS-WFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALY--G--TSG  382 (491)
T ss_dssp             HHHHHSCCCSSSCSG-GGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHC--C--CCT
T ss_pred             HHHHHHhccCccCHH-HHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhc--C--CCC
Confidence            66654 566655566 6778888899999999999999999987655     55555555555444432110  0  001


Q ss_pred             cchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccchhHHHHHHHH
Q 043907          245 EGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKAGIFFFFGGLV  324 (330)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  324 (330)
                      +.+.+.......+.+.+.+. ..+....++.|.+|++.|+++.|+.+....++..+++.+.+.+.+......|.++++++
T Consensus       383 ~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~  461 (491)
T 4aps_A          383 KVSPLWLVGSWALVILGEML-ISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGS  461 (491)
T ss_dssp             TCCTHHHHHHHHHHHHHHHT-TTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHH-HhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            12333333444444444332 23455667789999999999999999999999999999999887654456666665555


Q ss_pred             HHh
Q 043907          325 LIM  327 (330)
Q Consensus       325 ~~~  327 (330)
                      +++
T Consensus       462 ~~~  464 (491)
T 4aps_A          462 VVL  464 (491)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.89  E-value=7.5e-24  Score=176.67  Aligned_cols=149  Identities=11%  Similarity=0.071  Sum_probs=97.3

Q ss_pred             hHHHhHHHHHHhc-C---CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCC
Q 043907          164 IVGLYSPVLFRTL-K---LGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGD  239 (330)
Q Consensus       164 ~~~~~~~~~~~~~-g---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (330)
                      ....+.|.++++. +   .+....+ .......+...++.++.++++||+|||+.+..+..+.++..+.+...       
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~-------  309 (417)
T 2cfq_A          238 VFDQQFANFFTSFFATGEQGTRVFG-YVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA-------  309 (417)
T ss_dssp             HHHHHHHHHHHHTSSSHHHHTHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC-------
T ss_pred             HHHHHHHHHHHHHHhccCCChhHHH-HHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh-------
Confidence            3344566665442 2   1223334 56667777888999999999999999998887776666554443221       


Q ss_pred             CCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHH-HHHHHHHHHHHHHhhhhHHhhcc-chhH
Q 043907          240 HGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSIT-VAVNFVFTFLTAQTFLPMLCHFK-AGIF  317 (330)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~g-~~~~  317 (330)
                            ++.+.......+...+.. ...+..+.+++|.+|++.|+++.++. +....+++.++|.+.|.+.+..| ...|
T Consensus       310 ------~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f  382 (417)
T 2cfq_A          310 ------TSALEVVILKTLHMFEVP-FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAY  382 (417)
T ss_dssp             ------CSHHHHHHHTTHHHHHHH-HHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHH
T ss_pred             ------ccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHH
Confidence                  122222222222222222 12223356778999999999999984 88888999999999999998877 3566


Q ss_pred             HHHHHHHHHh
Q 043907          318 FFFGGLVLIM  327 (330)
Q Consensus       318 ~~~~~~~~~~  327 (330)
                      .+.+++++++
T Consensus       383 ~~~~~~~l~~  392 (417)
T 2cfq_A          383 LVLGLVALGF  392 (417)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6666655544

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.80  E-value=1.2e-19  Score=156.01  Aligned_cols=82  Identities=13%  Similarity=0.178  Sum_probs=69.9

Q ss_pred             cchhhhhhhh-chhHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHhhcccccccc-----------------------
Q 043907            2 LIASSVTRAI-GRKVSILIGGVAFLADSAYGGSAF-NIYMLIFGRLLLGVGIGFGNQ-----------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~-Grk~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~~g~~~~-----------------------   56 (330)
                      +++|+++||+ |||+++..+.++..++.++.++++ +++.+++.|+++|++.+...+                       
T Consensus        72 ~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  151 (524)
T 2xut_A           72 LLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFD  151 (524)
T ss_dssp             HHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHH
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHH
Confidence            5789999999 999999999999999999999998 999999999999999988765                       


Q ss_pred             -------------------ccCccchHHHHHhhhHHHHHHHHHHhh
Q 043907           57 -------------------IKGGWGWRISLAMAAAPASILTIGAIF   83 (330)
Q Consensus        57 -------------------~~~~~~wr~~~~~~~~~~~~~~~~~~~   83 (330)
                                         +.+..+||+.|++.++..++..+..++
T Consensus       152 ~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          152 MFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL  197 (524)
T ss_dssp             HHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence                               334578999999888776665554443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.58  E-value=3.2e-14  Score=119.45  Aligned_cols=154  Identities=12%  Similarity=0.019  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHH
Q 043907          148 VMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQV  227 (330)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~  227 (330)
                      +....+..+.............|.+.+++|.+..+.+ +..+...++..++.++.|+++||+|||+.+..+..+..++.+
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~  106 (438)
T 3o7q_A           28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAG-LIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAA  106 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHH-HHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            3344444444445556677778888899999999999 999999999999999999999999999999999999988887


Q ss_pred             HHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhh
Q 043907          228 IIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLP  307 (330)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~  307 (330)
                      .......          .++.+...+...+.+.+.+.. .+....+++|.+|+++|+++.++.+....+|..+++.+.+.
T Consensus       107 ~~~~~~~----------~~~~~~l~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  175 (438)
T 3o7q_A          107 LFWPAAE----------IMNYTLFLVGLFIIAAGLGCL-ETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS  175 (438)
T ss_dssp             HHHHHHH----------TTCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred             HHHhccc----------cccHHHHHHHHHHHHhhHHHh-hhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7733211          134455555555555555433 33556777999999999999999999999999999999999


Q ss_pred             HH-hhcc
Q 043907          308 ML-CHFK  313 (330)
Q Consensus       308 ~~-~~~g  313 (330)
                      +. +..+
T Consensus       176 l~~~~~~  182 (438)
T 3o7q_A          176 LILSNVP  182 (438)
T ss_dssp             HHHTSSC
T ss_pred             HHhcccc
Confidence            88 4443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.56  E-value=1.3e-14  Score=122.21  Aligned_cols=170  Identities=13%  Similarity=0.034  Sum_probs=127.9

Q ss_pred             hhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHH
Q 043907          145 PQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLV  224 (330)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~  224 (330)
                      ++.+....+..+.............|.+.+++ .+..+.+ +..+...++..++.++.|+++||+|||+.+..+..+.++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~  104 (451)
T 1pw4_A           27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLG-FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA  104 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHH-HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHH-HHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHH
Confidence            34445555555555555566677788888888 9999998 999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHh
Q 043907          225 SQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQT  304 (330)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~  304 (330)
                      +.+...+....         .++.+...+...+.+.+.+.. .+....++.|.+|+++|+++.++.+....++..++|.+
T Consensus       105 ~~~~~~~~~~~---------~~~~~~l~~~~~l~G~~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~  174 (451)
T 1pw4_A          105 VMLFMGFVPWA---------TSSIAVMFVLLFLCGWFQGMG-WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLL  174 (451)
T ss_dssp             HHHHHHHCHHH---------HSSSSHHHHHHHHHHHHHHHT-HHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred             HHHHHHhhhhc---------cccHHHHHHHHHHHHHHhhhc-cchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            88887761100         033444455555555444433 34556677899999999999999999999999999999


Q ss_pred             hhhHHhhcc-c-hhHHHHHHHHHH
Q 043907          305 FLPMLCHFK-A-GIFFFFGGLVLI  326 (330)
Q Consensus       305 ~~~~~~~~g-~-~~~~~~~~~~~~  326 (330)
                      .+.+.+..+ | ..|++.++++++
T Consensus       175 ~~~l~~~~g~w~~~f~~~~~~~~~  198 (451)
T 1pw4_A          175 FLLGMAWFNDWHAALYMPAFCAIL  198 (451)
T ss_dssp             HHHHHHHTCCSTTCTHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHH
Confidence            999888887 6 456655554443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.49  E-value=1.7e-13  Score=112.54  Aligned_cols=158  Identities=13%  Similarity=0.054  Sum_probs=123.1

Q ss_pred             HHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHH
Q 043907          155 FFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMA  234 (330)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~  234 (330)
                      .+.............|.+.++.|.++.+.+ +..+...++..++.++.|+++||+|||+.+..+.....++.+.....  
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--   85 (375)
T 2gfp_A            9 VAVGQMAQTIYIPAIADMARDLNVREGAVQ-SVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT--   85 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSSSTTHHHH-HHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHhhhhHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh--
Confidence            333344455666677888889999999999 99999999999999999999999999999999998888888777664  


Q ss_pred             HHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc
Q 043907          235 AQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA  314 (330)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~  314 (330)
                                 ++.+.......+.+.+.+ ...+....++.|.+|+++|+++.++.+....++..++|.+.+.+.+..+|
T Consensus        86 -----------~~~~~l~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  153 (375)
T 2gfp_A           86 -----------SSLTVLIAASAMQGMGTG-VGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNW  153 (375)
T ss_dssp             -----------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHH
T ss_pred             -----------ccHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccH
Confidence                       344444444444444433 23445566778999999999999999999999999999999999888785


Q ss_pred             -hhHHHHHHHHHHh
Q 043907          315 -GIFFFFGGLVLIM  327 (330)
Q Consensus       315 -~~~~~~~~~~~~~  327 (330)
                       ..+++.+++.++.
T Consensus       154 ~~~~~~~~~~~~~~  167 (375)
T 2gfp_A          154 RACYLFLLVLCAGV  167 (375)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence             5566666555544

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.47  E-value=4.5e-13  Score=114.17  Aligned_cols=160  Identities=13%  Similarity=0.060  Sum_probs=118.4

Q ss_pred             HHHHHHHHhhhhHhHHHhHHHHHH-h-----cCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH-hCcchhhhHhhHHHH
Q 043907          151 ILIPFFQQVTGINIVGLYSPVLFR-T-----LKLGESTSLLLSAVVAGGMGTVLAIISMILADK-FGRKVLFLVGGMQML  223 (330)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~-~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~  223 (330)
                      .....+....+++....+.+.+++ +     +|.+..+.+ +..+...++..++.++.|+++|| +|||+.+..+..+..
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~   96 (491)
T 4aps_A           18 LFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAA-SIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIM   96 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence            333333344455556566666664 4     899999999 99999999999999999999999 899999999988888


Q ss_pred             HHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhh--hhhhhhHHHHHHHHHHHHH
Q 043907          224 VSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEI--RSAGQSITVAVNFVFTFLT  301 (330)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~g~~~~~~~~~~~~~  301 (330)
                      ++.+.....             ++.+...+...+.+.+.+.. .+....+++|.+|+++  |+++.++.+....++..++
T Consensus        97 ~~~~~~~~~-------------~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~  162 (491)
T 4aps_A           97 LGHIVLALP-------------FGASALFGSIILIIIGTGFL-KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIA  162 (491)
T ss_dssp             HHHHHHHSC-------------CSTTHHHHHHHHHHHHHHHH-HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHh-------------hhHHHHHHHHHHHHHHHHhc-cchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHH
Confidence            887766542             33444444445554444433 3455677789999888  7788888889999999999


Q ss_pred             HHhhhhHHhhccc-hhHHHHHHHHH
Q 043907          302 AQTFLPMLCHFKA-GIFFFFGGLVL  325 (330)
Q Consensus       302 ~~~~~~~~~~~g~-~~~~~~~~~~~  325 (330)
                      |.+.+.+.+..|| +.|++.++..+
T Consensus       163 ~~~~~~l~~~~g~~~~f~~~~~~~~  187 (491)
T 4aps_A          163 PLIVGAAQEAAGYHVAFSLAAIGMF  187 (491)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            9999999998885 55555544443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.41  E-value=2.2e-12  Score=110.81  Aligned_cols=153  Identities=15%  Similarity=0.038  Sum_probs=113.8

Q ss_pred             hhhHhHHHhHHHHH-HhcC------CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhhHhhHHHHHHHHHHHH
Q 043907          160 TGINIVGLYSPVLF-RTLK------LGESTSLLLSAVVAGGMGTVLAIISMILADKF-GRKVLFLVGGMQMLVSQVIIGS  231 (330)
Q Consensus       160 ~~~~~~~~~~~~~~-~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~  231 (330)
                      .+++....+.+.++ ++.|      +++.+.+ +..+...++..++.++.|+++||+ |||+.+..+..+..++.+....
T Consensus        26 ~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~  104 (524)
T 2xut_A           26 FSFYGMRNILTPFLMTALLLSIPEELRGAVAK-DVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAI  104 (524)
T ss_dssp             HHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHH-HHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccccccccCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            34455556666665 5678      8999998 899999999999999999999999 9999999988888887777665


Q ss_pred             HHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhH---HHHHHHHHHHHHHHhhhhH
Q 043907          232 IMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSI---TVAVNFVFTFLTAQTFLPM  308 (330)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~---~~~~~~~~~~~~~~~~~~~  308 (330)
                      .            +.+.+.......+.+.+.+. ..+....++.|.+|+++|++..+.   .+....++..++|.+.+.+
T Consensus       105 ~------------~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l  171 (524)
T 2xut_A          105 F------------EHSVQGFYTGLFLIALGSGG-IKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLL  171 (524)
T ss_dssp             T------------SSCHHHHHHHHHHHHHHHHT-THHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHH
T ss_pred             h------------cccHHHHHHHHHHHHHhccc-cchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3            11344444444444444443 334556677899999999876666   8888999999999999999


Q ss_pred             Hhhccc-hhHHHHHHHHHH
Q 043907          309 LCHFKA-GIFFFFGGLVLI  326 (330)
Q Consensus       309 ~~~~g~-~~~~~~~~~~~~  326 (330)
                      .+..+| ..|++.+++.++
T Consensus       172 ~~~~g~~~~f~~~~~~~~~  190 (524)
T 2xut_A          172 LKNFGAAVAFGIPGVLMFV  190 (524)
T ss_dssp             HHTSCHHHHHHHHHHHHHH
T ss_pred             hccccHHHHHHHHHHHHHH
Confidence            888885 455555544433

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.13  E-value=3.1e-10  Score=96.68  Aligned_cols=124  Identities=13%  Similarity=0.017  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCC--C---CCcchhHHHHHHHHHhhc
Q 043907          186 LSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHG--G---CSEGYAYLILVLVCLCSS  260 (330)
Q Consensus       186 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~  260 (330)
                      +..+...++.++|+++.|+++||+|||+.+..+.++..++.++.++..........  .   .-.++.+..++.-.+.+.
T Consensus        59 ~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~  138 (491)
T 4gc0_A           59 FCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGI  138 (491)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHH
Confidence            56677889999999999999999999999999999988888776642100000000  0   001334445555555555


Q ss_pred             ccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHhhhhHHh
Q 043907          261 GYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQTFLPMLC  310 (330)
Q Consensus       261 ~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~  310 (330)
                      +.+. ..+....+++|..|++.|+...++.+.....+..+++........
T Consensus       139 g~G~-~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~  187 (491)
T 4gc0_A          139 GVGL-ASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIAR  187 (491)
T ss_dssp             HHHH-HHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHH-HHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcc
Confidence            5443 334566788999999999999999988887777777776665544

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.99  E-value=4.2e-10  Score=93.70  Aligned_cols=150  Identities=13%  Similarity=-0.003  Sum_probs=89.5

Q ss_pred             HhhhhHhHHHhHHHHHH-hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHH
Q 043907          158 QVTGINIVGLYSPVLFR-TLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQ  236 (330)
Q Consensus       158 ~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~  236 (330)
                      ...+......+.|.+++ +.|.++.+.+ ...+...++..+++++.|+++||+|||+.+..+.....+....+...... 
T Consensus        19 ~~~~~~~~~~~~~~~l~~~~g~s~~~~g-~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~-   96 (417)
T 2cfq_A           19 YFFIMGAYFPFFPIWLHDINHISKSDTG-IIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG-   96 (417)
T ss_dssp             HHHHHHHHTTTHHHHHHTTTCCCTTTSH-HHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            33444555667888775 4799999999 99999999999999999999999999999888776654422111110000 


Q ss_pred             hCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccch--hhhhhhhhHHHHHHHHHHHHHHHhhhhHHhhccc
Q 043907          237 LGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPL--EIRSAGQSITVAVNFVFTFLTAQTFLPMLCHFKA  314 (330)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~--~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~  314 (330)
                              ..................+....+. .....+..++  +.|+...|..+....++..++|.+.+.+.+. ++
T Consensus        97 --------~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~-~~  166 (417)
T 2cfq_A           97 --------PLLQYNILVGSIVGGIYLGFCFNAG-APAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-NN  166 (417)
T ss_dssp             --------HHHHTTCCHHHHGGGSSTTHHHHTT-HHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH-CS
T ss_pred             --------HHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh-ch
Confidence                    0000000111112122222222211 1122223332  4567777887777888999999999988764 43


Q ss_pred             -hhHHH
Q 043907          315 -GIFFF  319 (330)
Q Consensus       315 -~~~~~  319 (330)
                       ..|++
T Consensus       167 ~~~f~~  172 (417)
T 2cfq_A          167 QFVFWL  172 (417)
T ss_dssp             HHHHTT
T ss_pred             hHHHHH
Confidence             34443

>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}

Probab=83.85  E-value=0.36  Score=20.35  Aligned_cols=14  Identities=21%  Similarity=0.437  Sum_probs=11.4

Q ss_pred             chhhhhhhhchhHH
Q 043907            3 IASSVTRAIGRKVS   16 (330)
Q Consensus         3 ~~g~l~d~~Grk~~   16 (330)
                      +.|.+..|||||.+
T Consensus         2 lfgklikkfgrkai   15 (26)
T 2g9p_A            2 LFGKLIKKFGRKAI   15 (26)
T ss_dssp             HHHHHHHHHTSHHH
T ss_pred             cHHHHHHHHhHHHH
Confidence            46889999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	330
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.95
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.9
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.5
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.13

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=6.8e-27  Score=195.12  Aligned_cols=298  Identities=14%  Similarity=0.031  Sum_probs=188.4

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHhhcccccccc---------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAF----NIYMLIFGRLLLGVGIGFGNQ---------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~r~l~G~~~g~~~~---------------------   56 (330)
                      +++|+++||+|||+++..+.++.+++.+++++++    +++.+++.|++.|++.|...+                     
T Consensus        77 ~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~  156 (447)
T d1pw4a_          77 FIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSV  156 (447)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred             HHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccc
Confidence            5789999999999999999999999999988764    678999999999999888765                     


Q ss_pred             -------------------ccCccchHHHHHhhhHHHHHHHHH-HhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhH
Q 043907           57 -------------------IKGGWGWRISLAMAAAPASILTIG-AIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKA  116 (330)
Q Consensus        57 -------------------~~~~~~wr~~~~~~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~  116 (330)
                                         .....+||+.|++.+...++..+. ..+.+|+|+....... +++          +   ++
T Consensus       157 ~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----------~---~~  222 (447)
T d1pw4a_         157 WNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-EEY----------K---ND  222 (447)
T ss_dssp             HHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-TTT----------C---CC
T ss_pred             cccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchh-hhh----------h---hh
Confidence                               222347999998887766665544 5557777654322211 100          0   00


Q ss_pred             HHHHHHHhcc-ccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHH-hcCCCCchhhHHHHHHHHHH
Q 043907          117 ELNDLIRASS-TSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFR-TLKLGESTSLLLSAVVAGGM  194 (330)
Q Consensus       117 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~  194 (330)
                      +.++..++.+ +....+...++.+    +++.++......+......+....+.|.+++ ..+.+..+.+ .......+.
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  297 (447)
T d1pw4a_         223 YPDDYNEKAEQELTAKQIFMQYVL----PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSS-WAYFLYEYA  297 (447)
T ss_dssp             -------------CCTHHHHHHTS----SCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHH-HHHHHHHHH
T ss_pred             cccchhhccccccchhhHHHHHHH----cCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhh-hhhhcchhh
Confidence            0000000001 1111111222222    2334444444444444555667777888775 4688888888 888999999


Q ss_pred             HHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccccccccccccc
Q 043907          195 GTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVP  274 (330)
Q Consensus       195 ~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (330)
                      .+++.++.+++.||.+|++....................        .....+.+....+....+.+.. +..+....+.
T Consensus       298 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~  368 (447)
T d1pw4a_         298 GIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW--------MNPAGNPTVDMICMIVIGFLIY-GPVMLIGLHA  368 (447)
T ss_dssp             HHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTT--------SCCTTCHHHHHHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHH--------hcccccHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            999999999999999988765544443333332222211        0012233333444343333322 3334556677


Q ss_pred             ccccchhhhhhhhhHHHHHHHHHH-HHHHHhhhhHHhhccc-hhHHHHHHHHHHh
Q 043907          275 SEIFPLEIRSAGQSITVAVNFVFT-FLTAQTFLPMLCHFKA-GIFFFFGGLVLIM  327 (330)
Q Consensus       275 ~e~~p~~~r~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~  327 (330)
                      .|.+|++.|+++.|+.+..+++++ .++|.+.+.+.|..|+ ..+++.+++++++
T Consensus       369 ~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~  423 (447)
T d1pw4a_         369 LELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILA  423 (447)
T ss_dssp             HHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHH
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence            899999999999999998888754 5678899999999984 4555555544443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=3.7e-24  Score=176.31  Aligned_cols=281  Identities=10%  Similarity=0.031  Sum_probs=169.3

Q ss_pred             cchhhhhhhhchhHHHHHHHHHHHHHHHHHhhhhhHHHH----HHHHHHhhcccccccc---------------------
Q 043907            2 LIASSVTRAIGRKVSILIGGVAFLADSAYGGSAFNIYML----IFGRLLLGVGIGFGNQ---------------------   56 (330)
Q Consensus         2 ~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~r~l~G~~~g~~~~---------------------   56 (330)
                      +++|+++||+|||++++++..+..++.....+.++....    ++.+.+.+.+.+....                     
T Consensus        61 ~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (417)
T d1pv7a_          61 PLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEF  140 (417)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCH
T ss_pred             HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHH
Confidence            678999999999999999999999998888877665443    4455555554444333                     


Q ss_pred             -------------------ccCccchHHHHHhhhHH-HHHHHHHHhhcCCCchhhhccCCcHHHHHHHHHHHhcccchhH
Q 043907           57 -------------------IKGGWGWRISLAMAAAP-ASILTIGAIFLPETPNSKIQRSDDHQKAQKMLQRIRGISDVKA  116 (330)
Q Consensus        57 -------------------~~~~~~wr~~~~~~~~~-~~~~~~~~~~~pesp~~~~~~~~~~~~a~~~~~~~~~~~~~~~  116 (330)
                                         .....+|+..+...... .+...+..+..||+|+..   ++ .++                
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~----------------  200 (417)
T d1pv7a_         141 GRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSA---TV-ANA----------------  200 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSS---CS-SHH----------------
T ss_pred             HHHhhhhccccccccccccccccccccccccchhhHHHHHHHHHHHHhcccccch---hh-hhh----------------
Confidence                               12224555555554443 334444455677776421   11 111                


Q ss_pred             HHHHHHHhccccccCccchHHhcccccchhHHHHHHHHHHHHhhhhHhHHHhHHHHHHh----cCCCCchhhHHHHHHHH
Q 043907          117 ELNDLIRASSTSKSITQPFKNIIQRKYRPQPVMAILIPFFQQVTGINIVGLYSPVLFRT----LKLGESTSLLLSAVVAG  192 (330)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~  192 (330)
                            ++.++++.......+..+.+..+............    ........+.+...    .+.+..... .......
T Consensus       201 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  269 (417)
T d1pv7a_         201 ------VGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCT----YDVFDQQFANFFTSFFATGEQGTRVFG-YVTTMGE  269 (417)
T ss_dssp             ------HHSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHH----HHHHHHHHHHHHTTSSSCHHHHHHHHH-HHHHHHH
T ss_pred             ------hhhhcccccccccccccccccccchhhhhHHHHHH----HHhhhccccccccccccccccchhhhc-ccccccc
Confidence                  00011111111222222222222222222222211    11222222222221    223333444 5677778


Q ss_pred             HHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhccccccccccccc
Q 043907          193 GMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWL  272 (330)
Q Consensus       193 ~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (330)
                      +...++..+.+++.||.++|+.+..+..+..++.+.+...             ++.+.......+.+.+.+... +....
T Consensus       270 ~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~g~~~~~~~-~~~~~  335 (417)
T d1pv7a_         270 LLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA-------------TSALEVVILKTLHMFEVPFLL-VGCFK  335 (417)
T ss_dssp             HHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred             cccccchhhhhhhhcccccccchhhhHHHHHHhhhccccc-------------cccchhhHHHHHHHHHHHHHH-HHHHH
Confidence            8889999999999999999999998888887777666542             344444455555555544333 34566


Q ss_pred             ccccccchhhhhhhhhHHH-HHHHHHHHHHHHhhhhHHhhcc-chhHHHHHHHHHHh
Q 043907          273 VPSEIFPLEIRSAGQSITV-AVNFVFTFLTAQTFLPMLCHFK-AGIFFFFGGLVLIM  327 (330)
Q Consensus       273 ~~~e~~p~~~r~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~  327 (330)
                      ++.|.+|++.|+++.++.. ....++..++|.+.|.+.|+.| ...+++.++++++.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~  392 (417)
T d1pv7a_         336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGF  392 (417)
T ss_dssp             HHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence            7789999999999999854 5567899999999999999999 46677766665544

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=4.9e-14  Score=116.50  Aligned_cols=168  Identities=13%  Similarity=0.054  Sum_probs=117.6

Q ss_pred             hhHHHHHHHHHHHHhhhhHhHHHhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHH
Q 043907          145 PQPVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLV  224 (330)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~  224 (330)
                      +..+..+.+..+........+....|. .++.|++..+.+ +..+...++..++.++.|+++||+|||+.+..+.++..+
T Consensus        24 w~i~~~~~~~~~~~~~~~~~~~~~~p~-~~~~g~s~~~~g-~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~  101 (447)
T d1pw4a_          24 WQIFLGIFFGYAAYYLVRKNFALAMPY-LVEQGFSRGDLG-FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA  101 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHH-TTSSTTCSSCHH-HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCcCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence            344444444444333333334444554 456899999999 999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhHHHHHHHHHHHHHHHh
Q 043907          225 SQVIIGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFVFTFLTAQT  304 (330)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~~~~~~~~~  304 (330)
                      +.+..+.....         ..+.+...+...+.+.+.+... +....++.|.+|+++|+++.++.+....++..+++.+
T Consensus       102 ~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~  171 (447)
T d1pw4a_         102 VMLFMGFVPWA---------TSSIAVMFVLLFLCGWFQGMGW-PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLL  171 (447)
T ss_dssp             HHHHHHHCHHH---------HSSSSHHHHHHHHHHHHHHHTH-HHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred             HHhhccccchh---------hhhHHHHHHHHHHHHHhhhhhh-hHHHHHHHHHHHhhcccccccccccccchhhhhhhhh
Confidence            88776654211         0223334444444444444333 3445667899999999999999999999999999998


Q ss_pred             hhhHHhhcc-c-hhHHHHHHHH
Q 043907          305 FLPMLCHFK-A-GIFFFFGGLV  324 (330)
Q Consensus       305 ~~~~~~~~g-~-~~~~~~~~~~  324 (330)
                      .+...+..+ | +.+++.+.+.
T Consensus       172 ~~~~~~~~~~w~~~~~~~~~~~  193 (447)
T d1pw4a_         172 FLLGMAWFNDWHAALYMPAFCA  193 (447)
T ss_dssp             HHHHHHHTCCSTTCTHHHHHHH
T ss_pred             hhhHhhhhhcccccchhhhhhH
Confidence            888777664 4 3444444443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=6.3e-10  Score=90.14  Aligned_cols=159  Identities=14%  Similarity=0.018  Sum_probs=98.1

Q ss_pred             HHHHHHHHHhhhhHhHHHhHHHHH-HhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhHhhHHHHHHHHH
Q 043907          150 AILIPFFQQVTGINIVGLYSPVLF-RTLKLGESTSLLLSAVVAGGMGTVLAIISMILADKFGRKVLFLVGGMQMLVSQVI  228 (330)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~  228 (330)
                      ...+..+....+......+.|.++ ++.|.++.+.+ ++.+...++..++.++.|+++||+|||+.++.+.....++...
T Consensus        11 ~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g-~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~   89 (417)
T d1pv7a_          11 MFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTG-IIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAP   89 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            333444444444555666777766 45799999999 9999999999999999999999999999999888877777666


Q ss_pred             HHHHHHHHhCCCCCCCcchhHHHHHHHHHhhcccccccccccccccccccc--hhhhhhhhhHHHHHHHHHHHHHHHhhh
Q 043907          229 IGSIMAAQLGDHGGCSEGYAYLILVLVCLCSSGYCYSWGPLAWLVPSEIFP--LEIRSAGQSITVAVNFVFTFLTAQTFL  306 (330)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p--~~~r~~~~g~~~~~~~~~~~~~~~~~~  306 (330)
                      .......         ..................+....+..... .+..+  .+.+....+........+..+++.+.+
T Consensus        90 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (417)
T d1pv7a_          90 FFIFIFG---------PLLQYNILVGSIVGGIYLGFCFNAGAPAV-EAFIEKVSRRSNFEFGRARMFGCVGWALGASIVG  159 (417)
T ss_dssp             HHHHTHH---------HHHHTTCHHHHHHTTTTGGGGGTTHHHHH-HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhh---------hhHHHHHHHHHHHhhhcccccccchhhcc-cccccchhhhhHHHHHHHhhhhcccccccccccc
Confidence            6554110         01111111222222222222222221111 12222  234555667777777788888888888


Q ss_pred             hHHhhccchhHHH
Q 043907          307 PMLCHFKAGIFFF  319 (330)
Q Consensus       307 ~~~~~~g~~~~~~  319 (330)
                      .+.+..++..+..
T Consensus       160 ~l~~~~~~~~~~~  172 (417)
T d1pv7a_         160 IMFTINNQFVFWL  172 (417)
T ss_dssp             HHHHHCHHHHHHH
T ss_pred             ccccccccccccc
Confidence            8877665444433