Citrus Sinensis ID: 043911

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------9
Protein Sequence
MESLMGFRFQPSNEQIICLLEKKRLNPRFLHHTIKDIDDICSLEPWDLAGASKTESEDQVCYFFYKPYYKYKESTRAHRRTNAGYWKVT
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHccccccccccEEEEEcccccccccccccccccccccEEEEEcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHHHccccccEEEEEcEEEcccccccccHHccccccccEEEEEccccccccccccccHHccccccEcc
Coil and Loop (DISEMBL)
meslmgfrfqpsNEQIICLLekkrlnprflhhtikdiddicslepwdlagasktesedqvcyffykpyykykestrahrrtnagywkvt
Flexible Loop (DISEMBL)
meslmgfrfqpsnEQIICLLEKKRLNPRFLHHTIKDIDDICSLEPWDLAGasktesedqvCYFFYKPyykykestrahrrtnagywkvt
Low Complexity Region (SEG)
MESLMGFRFQPSNEQIICLLEKKRLNPRFLHHTIKDIDDICSLEPWDLAGASKTESEDQVCyffykpyykykESTRAHRRTNAGYWKVT
Disordered region (IsUnstruct)
************NEQIICLLEKKRLNPRFLHHTIKDIDDICSLEPWDLAGASKTESEDQVCYFFYKPYYKYKESTR********Y****
Disordered Region (DISOPRED)
MESLMGFRFQPSNEQIICLLEKKRLNPRFLHHTIKDIDDICSLEPWDLAGASKTESEDQVCYFFYKPYYKYKESTRAHRRTNAGYWKVT
Disordered Region (DISEMBL)
MESLMGFRFQPSNEQIICLLEKKRLNPRFLHHTIKDIDDICSLEPWDLAGASKTESEDQVCYFFYKPYYKYKESTRAHRRTNAGYWKVT
Disordered Region (DISPRO)
*ESLMGFRFQPSNEQIICLLEKKRLNPRFLHHTIKDIDDICSLEPWDLAGASKTESEDQVCYFFYKPYYKYKE**R*************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESLMGFRFQPSNEQIICLLEKKRLNPRFLHHTIKDIDDICSLEPWDLAGASKTESEDQVCYFFYKPYYKYKESTRAHRRTNAGYWKVT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	89	2.2.26 [Sep-21-2011]
O81913	359	NAC domain-containing pro	no	no	0.955	0.236	0.4	4e-12
O81914	362	NAC domain-containing pro	no	no	0.955	0.234	0.368	6e-12
Q5CD17	396	NAC domain-containing pro	no	no	0.910	0.204	0.411	5e-09
Q9FWX2	395	NAC domain-containing pro	no	no	0.932	0.210	0.430	6e-09
Q84K00	567	NAC domain-containing pro	no	no	0.932	0.146	0.4	8e-09
Q9SV87	341	Protein BEARSKIN1 OS=Arab	no	no	0.932	0.243	0.383	6e-08
Q9C878	305	Protein BEARSKIN1 OS=Arab	no	no	0.932	0.272	0.372	1e-07
Q9FIW5	337	Putative NAC domain-conta	no	no	0.910	0.240	0.393	1e-07
Q7GCL7	489	NAC domain-containing pro	no	no	1.0	0.182	0.347	1e-07
Q9FRV4	310	Protein CUP-SHAPED COTYLE	no	no	0.955	0.274	0.406	2e-07

>sp|O81913|NAC4_ARATH NAC domain-containing protein 4 OS=Arabidopsis thaliana GN=NAC004 PE=2 SV=2

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 51/95 (53%), Gaps = 10/95 (10%)

Query: 1  MESLMGFRFQPSNEQIICLLEKKRLNPRFLHHTIKDID------DICSLEPWDLAGASKT 54
          M + +GFRF+P++E+I+       L P+ L      +D      DICS EPWDL   S  
Sbjct: 1  MMNPVGFRFRPNDEEIV----DHYLRPKNLDSDTSHVDEVISTVDICSFEPWDLPSKSMI 56

Query: 55 ESEDQVCYFFYKPYYKYKESTRAHRRTNAGYWKVT 89
          +S D V YFF     KY    +  RRTN+G+WK T
Sbjct: 57 KSRDGVWYFFSVKEMKYNRGDQQRRRTNSGFWKKT 91

Arabidopsis thaliana (taxid: 3702)

>sp|O81914|NAC5_ARATH NAC domain-containing protein 5 OS=Arabidopsis thaliana GN=NAC005 PE=2 SV=2

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 10/95 (10%)

Query: 1  MESLMGFRFQPSNEQIICLLEKKRLNPRFLHHTIKDID------DICSLEPWDLAGASKT 54
          M + +GFRF+P++ +I+ +     L P+ L      +D      DICS +PWDL   S+ 
Sbjct: 1  MANPVGFRFRPTDGEIVDIY----LRPKNLESNTSHVDEVISTVDICSFDPWDLPSHSRM 56

Query: 55 ESEDQVCYFFYKPYYKYKESTRAHRRTNAGYWKVT 89
          ++ DQV YFF +   KY +  R  R+T +G+WK T
Sbjct: 57 KTRDQVWYFFGRKENKYGKGDRQIRKTKSGFWKKT 91

Arabidopsis thaliana (taxid: 3702)

>sp|Q5CD17|NAC77_ORYSJ NAC domain-containing protein 77 OS=Oryza sativa subsp. japonica GN=NAC77 PE=2 SV=2

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/85 (41%), Positives = 46/85 (54%), Gaps = 4/85 (4%)

Query: 6   GFRFQPSN-EQIICLLEKKRLNPRFLHHTIKDIDDICSLEPWDLAGASKTESEDQVCYFF 64
           GFRF P++ E I+  L +K LNP F    I ++D +   EPWDL   SK +  ++  YFF
Sbjct: 22  GFRFHPTDAEVILSYLLQKLLNPSFTSLPIGEVD-LNKCEPWDLP--SKAKMGEKEWYFF 78

Query: 65  YKPYYKYKESTRAHRRTNAGYWKVT 89
                KY    R +R T  GYWK T
Sbjct: 79  SHKDMKYPTGMRTNRATKEGYWKAT 103

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FWX2|NAC7_ARATH NAC domain-containing protein 7 OS=Arabidopsis thaliana GN=NAC007 PE=2 SV=2

 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 48/86 (55%), Gaps = 3/86 (3%)

Query: 6  GFRFQPSNEQIICL-LEKKRLNPRFLHHTIKDIDDICSLEPWDLAGASKTESEDQV-CYF 63
          GFRF P++E+++   L KK  + R     IKDID +  +EPWDL    K   E+Q   YF
Sbjct: 10 GFRFHPTDEELVDYYLRKKVASKRIEIDFIKDID-LYKIEPWDLQELCKIGHEEQSDWYF 68

Query: 64 FYKPYYKYKESTRAHRRTNAGYWKVT 89
          F     KY   TR +R T AG+WK T
Sbjct: 69 FSHKDKKYPTGTRTNRATKAGFWKAT 94

Transcription factor probably involved in xylem formation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84K00|NAC78_ARATH NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2

 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 2/85 (2%)

Query: 6  GFRFQPSNEQII-CLLEKKRLNPRFLHHTIKDIDDICSLEPWDLAGASKTESEDQVCYFF 64
          GFRF P++E+++   L++K  N  F    I  + DI   EPWDL   SK +S D   YFF
Sbjct: 12 GFRFHPTDEELVRYYLKRKVCNKPFKFDAIS-VTDIYKSEPWDLPDKSKLKSRDLEWYFF 70

Query: 65 YKPYYKYKESTRAHRRTNAGYWKVT 89
               KY   ++ +R T  GYWK T
Sbjct: 71 SMLDKKYSNGSKTNRATEKGYWKTT 95

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SV87|BRN2_ARATH Protein BEARSKIN1 OS=Arabidopsis thaliana GN=BRN2 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 3/86 (3%)

Query: 6  GFRFQPSNEQIICLLEKKRLN-PRFLHHTIKDIDDICSLEPWDLAGASKTESEDQV-CYF 63
          GFRF P++E+++    KK+++  +F    I+++D +  LEPWDL    K  S  Q   YF
Sbjct: 12 GFRFHPTDEELLHYYLKKKISYQKFEMEVIREVD-LNKLEPWDLQERCKIGSTPQNEWYF 70

Query: 64 FYKPYYKYKESTRAHRRTNAGYWKVT 89
          F     KY   +R +R T+AG+WK T
Sbjct: 71 FSHKDRKYPTGSRTNRATHAGFWKAT 96

Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C878|BRN1_ARATH Protein BEARSKIN1 OS=Arabidopsis thaliana GN=BRN1 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 3/86 (3%)

Query: 6  GFRFQPSNEQIICLLEKKRLN-PRFLHHTIKDIDDICSLEPWDLAGASKTESEDQ-VCYF 63
          GFRF P++E+++    KK+++  +F    IK++D +  +EPWDL    K  S  Q   YF
Sbjct: 11 GFRFHPTDEELLHYYLKKKISYEKFEMEVIKEVD-LNKIEPWDLQDRCKIGSTPQNEWYF 69

Query: 64 FYKPYYKYKESTRAHRRTNAGYWKVT 89
          F     KY   +R +R T++G+WK T
Sbjct: 70 FSHKDRKYPTGSRTNRATHSGFWKAT 95

Transcription activator. Together with SMB and BRN2, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FIW5|NAC94_ARATH Putative NAC domain-containing protein 94 OS=Arabidopsis thaliana GN=ANAC094 PE=4 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/89 (39%), Positives = 51/89 (57%), Gaps = 8/89 (8%)

Query: 4   LMGFRFQPSNEQIICL-LEKKRLNPRFLHHTIKDIDDICSLEPWDLAG-ASKTESEDQVC 61
           L GFRF P++E+++   L++K L+       IK + DI   +PWDL   A+  E E    
Sbjct: 21  LPGFRFHPTDEELVSFYLKRKVLHKSLPFDLIKKV-DIYKYDPWDLPKLAAMGEKE---- 75

Query: 62  YFFYKPY-YKYKESTRAHRRTNAGYWKVT 89
           ++FY P   KY+ STR +R T  G+WK T
Sbjct: 76  WYFYCPRDRKYRNSTRPNRVTGGGFWKAT 104

Arabidopsis thaliana (taxid: 3702)

>sp|Q7GCL7|NAC74_ORYSJ NAC domain-containing protein 74 OS=Oryza sativa subsp. japonica GN=NAC74 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 6/95 (6%)

Query: 1  MESLM------GFRFQPSNEQIICLLEKKRLNPRFLHHTIKDIDDICSLEPWDLAGASKT 54
          MESL       GF F P + ++I    KK+++ + + + I    DI   EPWDL      
Sbjct: 1  MESLRDMVLPPGFGFHPKDTELISHYLKKKIHGQKIEYEIIPEVDIYKHEPWDLPAKCDV 60

Query: 55 ESEDQVCYFFYKPYYKYKESTRAHRRTNAGYWKVT 89
           ++D   +FF     KY   +R++R T AGYWK T
Sbjct: 61 PTQDNKWHFFAARDRKYPNGSRSNRATVAGYWKST 95

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FRV4|NAC54_ARATH Protein CUP-SHAPED COTYLEDON 1 OS=Arabidopsis thaliana GN=NAC054 PE=1 SV=1

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 49/91 (53%), Gaps = 6/91 (6%)

Query: 2   ESLM--GFRFQPSNEQIICL-LEKKRLNPRFLHHTIKDIDDICSLEPWDLAGASKTESED 58
           ESLM  GFRF P++E++I   L KK L+  F    I  +D +   EPW+L    K +  +
Sbjct: 17  ESLMPPGFRFHPTDEELITYYLLKKVLDSNFSCAAISQVD-LNKSEPWELP--EKAKMGE 73

Query: 59  QVCYFFYKPYYKYKESTRAHRRTNAGYWKVT 89
           +  YFF     KY    R +R T AGYWK T
Sbjct: 74  KEWYFFTLRDRKYPTGLRTNRATEAGYWKAT 104

Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Seems to act as an inhibitor of cell division.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	89
224063973	208	NAC domain protein, IPR003441 [Populus t	0.943	0.403	0.413	1e-12
358346559	400	NAC domain protein [Medicago truncatula]	0.943	0.21	0.413	6e-11
293334813	371	uncharacterized protein LOC100382573 [Ze	0.932	0.223	0.453	7e-11
302399031	850	NAC domain class transcription factor [M	1.0	0.104	0.411	1e-10
226499758	322	NAC domain-containing protein 77 [Zea ma	0.932	0.257	0.435	1e-10
224061527	537	NAC domain protein, IPR003441 [Populus t	1.0	0.165	0.388	1e-10
297851744	647	ANAC014 [Arabidopsis lyrata subsp. lyrat	1.0	0.137	0.4	2e-10
42571727	652	protein NAC 014 [Arabidopsis thaliana] g	1.0	0.136	0.4	2e-10
6910587	577	CDS [Arabidopsis thaliana]	1.0	0.154	0.4	2e-10
3258573	345	Hypothetical protein [Arabidopsis thalia	0.955	0.246	0.4	2e-10

>gi|224063973|ref|XP_002301328.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222843054|gb|EEE80601.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 56/87 (64%), Gaps = 3/87 (3%)

Query: 5  MGFRFQPSNEQIICLLEKKRLNPRFLH--HTIKDIDDICSLEPWDLAGASKTESEDQVCY 62
          +G+ F P++E+++    K ++   + H   TI +++ +C+ EPW+L G S  +S D  CY
Sbjct: 13 VGYGFHPTDEELVNHFLKLKMIGGYDHVVSTIAEVN-VCNYEPWELPGLSAIQSNDPECY 71

Query: 63 FFYKPYYKYKESTRAHRRTNAGYWKVT 89
          FF +P YKY +S RA+R T AGYWK T
Sbjct: 72 FFSRPNYKYSKSQRANRTTGAGYWKGT 98

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358346559|ref|XP_003637334.1| NAC domain protein [Medicago truncatula] gi|358346862|ref|XP_003637483.1| NAC domain protein [Medicago truncatula] gi|355503269|gb|AES84472.1| NAC domain protein [Medicago truncatula] gi|355503418|gb|AES84621.1| NAC domain protein [Medicago truncatula]

 Score = 71.2 bits (173), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 53/87 (60%), Gaps = 3/87 (3%)

Query: 5  MGFRFQPSNEQIICLLEKKRL--NPRFLHHTIKDIDDICSLEPWDLAGASKTESEDQVCY 62
          +GFRF+P++E+++    KK+L  N   +++ I ++D +C  EPWDL   S  +S D   +
Sbjct: 13 VGFRFRPTDEELVNHYLKKKLLGNDSIVNNVIAEVD-VCKFEPWDLPACSLIKSNDPEWF 71

Query: 63 FFYKPYYKYKESTRAHRRTNAGYWKVT 89
          FF    YKY  S R +RRT  GYWK T
Sbjct: 72 FFCPRDYKYANSKRFNRRTQCGYWKAT 98

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|293334813|ref|NP_001168776.1| uncharacterized protein LOC100382573 [Zea mays] gi|223972957|gb|ACN30666.1| unknown [Zea mays] gi|323388697|gb|ADX60153.1| NAC family member [Zea mays]

 Score = 71.2 bits (173), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 51/86 (59%), Gaps = 3/86 (3%)

Query: 6   GFRFQPSNEQII-CLLEKKRLNPRFLHHTIKDIDDICSLEPWDLAGASKTESED-QVCYF 63
           GFRF P++E++I   L +K LNP F  H I ++D +   EPWDL   +K   ED +  YF
Sbjct: 24  GFRFHPTDEEVITSYLLQKLLNPSFAPHAIGEVD-LNKCEPWDLPSKAKMGEEDSKEWYF 82

Query: 64  FYKPYYKYKESTRAHRRTNAGYWKVT 89
           F +   KY   TRA+R T  GYWK T
Sbjct: 83  FCRKGMKYPTGTRANRATKEGYWKAT 108

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302399031|gb|ADL36810.1| NAC domain class transcription factor [Malus x domestica]

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/90 (41%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 1  MESL-MGFRFQPSNEQIICLLEKKRLNPRFLHHTIKDIDDICSLEPWDLAGASKTESEDQ 59
          MESL +GFRF+P++E++I    + ++N R     +    D+C  EPWDL   S  +S+DQ
Sbjct: 6  MESLPLGFRFRPTDEELINHYLRLKINGRDSEVRVIPEIDVCRWEPWDLPKLSVIKSDDQ 65

Query: 60 VCYFFYKPYYKYKESTRAHRRTNAGYWKVT 89
            +FF     KY    R++R T+AGYWK T
Sbjct: 66 EWFFFCPRDRKYPNGHRSNRATDAGYWKAT 95

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226499758|ref|NP_001147618.1| NAC domain-containing protein 77 [Zea mays] gi|195612592|gb|ACG28126.1| NAC domain-containing protein 77 [Zea mays] gi|414588722|tpg|DAA39293.1| TPA: putative NAC domain transcription factor superfamily protein [Zea mays]

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/85 (43%), Positives = 47/85 (55%), Gaps = 2/85 (2%)

Query: 6   GFRFQPSNEQIIC-LLEKKRLNPRFLHHTIKDIDDICSLEPWDLAGASKTESEDQVCYFF 64
           GFRF P++E++I   L  K LNP F  H I ++D +   EPWDL   +K     +  YFF
Sbjct: 23  GFRFHPTDEEVITSYLLHKFLNPSFAPHAIGEVD-LNKCEPWDLPSKAKMGENSKEWYFF 81

Query: 65  YKPYYKYKESTRAHRRTNAGYWKVT 89
                KY   TRA+R T  GYWK T
Sbjct: 82  CHKDMKYPTGTRANRATKEGYWKAT 106

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061527|ref|XP_002300524.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222847782|gb|EEE85329.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/90 (38%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 1  MESL-MGFRFQPSNEQIICLLEKKRLNPRFLHHTIKDIDDICSLEPWDLAGASKTESEDQ 59
          M+SL +GFRF+P++E++I    + ++N R     +    D+C  EPWDL G S  +++D 
Sbjct: 5  MDSLPLGFRFRPTDEELISHYLRLKINGRDSEVEVIPEIDVCKWEPWDLPGQSVIKTDDP 64

Query: 60 VCYFFYKPYYKYKESTRAHRRTNAGYWKVT 89
            +FF     KY    R++R T+AGYWK T
Sbjct: 65 EWFFFCPRDRKYPNGHRSNRATDAGYWKAT 94

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851744|ref|XP_002893753.1| ANAC014 [Arabidopsis lyrata subsp. lyrata] gi|297339595|gb|EFH70012.1| ANAC014 [Arabidopsis lyrata subsp. lyrata]

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 55/90 (61%), Gaps = 1/90 (1%)

Query: 1   MESL-MGFRFQPSNEQIICLLEKKRLNPRFLHHTIKDIDDICSLEPWDLAGASKTESEDQ 59
           ME+L +GFRF+P++E++I    + ++N R L   +    D+C  EPWDL G S  +++DQ
Sbjct: 21  MEALPLGFRFRPTDEELINHYLRLKINGRDLEVRVIPEIDVCKWEPWDLPGLSVIKTDDQ 80

Query: 60  VCYFFYKPYYKYKESTRAHRRTNAGYWKVT 89
             +FF     KY    R++R T+ GYWK T
Sbjct: 81  EWFFFCPRDRKYPSGHRSNRATDIGYWKAT 110

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42571727|ref|NP_973954.1| protein NAC 014 [Arabidopsis thaliana] gi|209529787|gb|ACI49788.1| At1g33060 [Arabidopsis thaliana] gi|332193438|gb|AEE31559.1| protein NAC 014 [Arabidopsis thaliana]

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 55/90 (61%), Gaps = 1/90 (1%)

Query: 1   MESL-MGFRFQPSNEQIICLLEKKRLNPRFLHHTIKDIDDICSLEPWDLAGASKTESEDQ 59
           ME+L +GFRF+P++E++I    + ++N R L   +    D+C  EPWDL G S  +++DQ
Sbjct: 21  MEALPLGFRFRPTDEELINHYLRLKINGRDLEVRVIPEIDVCKWEPWDLPGLSVIKTDDQ 80

Query: 60  VCYFFYKPYYKYKESTRAHRRTNAGYWKVT 89
             +FF     KY    R++R T+ GYWK T
Sbjct: 81  EWFFFCPRDRKYPSGHRSNRATDIGYWKAT 110

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6910587|gb|AAF31292.1|AC006424_21 CDS [Arabidopsis thaliana]

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 55/90 (61%), Gaps = 1/90 (1%)

Query: 1  MESL-MGFRFQPSNEQIICLLEKKRLNPRFLHHTIKDIDDICSLEPWDLAGASKTESEDQ 59
          ME+L +GFRF+P++E++I    + ++N R L   +    D+C  EPWDL G S  +++DQ
Sbjct: 10 MEALPLGFRFRPTDEELINHYLRLKINGRDLEVRVIPEIDVCKWEPWDLPGLSVIKTDDQ 69

Query: 60 VCYFFYKPYYKYKESTRAHRRTNAGYWKVT 89
            +FF     KY    R++R T+ GYWK T
Sbjct: 70 EWFFFCPRDRKYPSGHRSNRATDIGYWKAT 99

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3258573|gb|AAC24383.1| Hypothetical protein [Arabidopsis thaliana]

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 51/95 (53%), Gaps = 10/95 (10%)

Query: 1  MESLMGFRFQPSNEQIICLLEKKRLNPRFLHHTIKDID------DICSLEPWDLAGASKT 54
          M + +GFRF+P++E+I+       L P+ L      +D      DICS EPWDL   S  
Sbjct: 1  MMNPVGFRFRPNDEEIV----DHYLRPKNLDSDTSHVDEVISTVDICSFEPWDLPSKSMI 56

Query: 55 ESEDQVCYFFYKPYYKYKESTRAHRRTNAGYWKVT 89
          +S D V YFF     KY    +  RRTN+G+WK T
Sbjct: 57 KSRDGVWYFFSVKEMKYNRGDQQRRRTNSGFWKKT 91

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	89
TAIR|locus:2037920	652	NAC014 "NAC 014" [Arabidopsis	0.988	0.134	0.373	2.1e-09
TAIR|locus:2204783	359	NAC004 "NAC domain containing	0.988	0.245	0.369	3.3e-09
TAIR|locus:2128013	534	NTL9 "NAC transcription factor	0.988	0.164	0.351	1.4e-08
TAIR|locus:2167155	476	NAC086 "NAC domain containing	0.943	0.176	0.345	2.5e-08
TAIR|locus:2009729	631	NAC028 "NAC domain containing	0.943	0.133	0.345	3e-08
TAIR|locus:2097720	479	NAC045 "NAC domain containing	0.932	0.173	0.341	5.3e-08
TAIR|locus:2075835	451	NAC052 "NAC domain containing	0.932	0.184	0.352	7.9e-08
TAIR|locus:2202028	395	NAC007 "NAC 007" [Arabidopsis	0.932	0.210	0.372	2.2e-07
TAIR|locus:2184342	567	NAC2 "NAC domain containing pr	0.932	0.146	0.341	2.4e-07
TAIR|locus:2114678	469	NAC062 "NAC domain containing	0.988	0.187	0.340	4.8e-07

TAIR|locus:2037920 NAC014 "NAC 014" [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 2.1e-09, P = 2.1e-09
 Identities = 34/91 (37%), Positives = 52/91 (57%)

Query:     1 MESL-MGFRFQPSNEQIICLLEKKRLNPRFLH-HTIKDIDDICSLEPWDLAGASKTESED 58
             ME+L +GFRF+P++E++I    + ++N R L    I +ID +C  EPWDL G S  +++D
Sbjct:    21 MEALPLGFRFRPTDEELINHYLRLKINGRDLEVRVIPEID-VCKWEPWDLPGLSVIKTDD 79

Query:    59 QVCXXXXXXXXXXXESTRAHRRTNAGYWKVT 89
             Q                R++R T+ GYWK T
Sbjct:    80 QEWFFFCPRDRKYPSGHRSNRATDIGYWKAT 110

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

TAIR|locus:2204783 NAC004 "NAC domain containing protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 3.3e-09, P = 3.3e-09
 Identities = 34/92 (36%), Positives = 47/92 (51%)

Query:     1 MESLMGFRFQPSNEQIIC-LLEKKRLNPRFLH--HTIKDIDDICSLEPWDLAGASKTESE 57
             M + +GFRF+P++E+I+   L  K L+    H    I  +D ICS EPWDL   S  +S 
Sbjct:     1 MMNPVGFRFRPNDEEIVDHYLRPKNLDSDTSHVDEVISTVD-ICSFEPWDLPSKSMIKSR 59

Query:    58 DQVCXXXXXXXXXXXESTRAHRRTNAGYWKVT 89
             D V               +  RRTN+G+WK T
Sbjct:    60 DGVWYFFSVKEMKYNRGDQQRRRTNSGFWKKT 91

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2128013 NTL9 "NAC transcription factor-like 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 32/91 (35%), Positives = 50/91 (54%)

Query:     1 MESL-MGFRFQPSNEQIICLLEKKRLNPRFLH-HTIKDIDDICSLEPWDLAGASKTESED 58
             MESL +GFRF+P++E+++    + ++N R      I DID +C  EPWDL   S  +++D
Sbjct:     6 MESLPLGFRFRPTDEELVNHYLRLKINGRHSDVRVIPDID-VCKWEPWDLPALSVIKTDD 64

Query:    59 QVCXXXXXXXXXXXESTRAHRRTNAGYWKVT 89
                              R++R T++GYWK T
Sbjct:    65 PEWFFFCPRDRKYPNGHRSNRATDSGYWKAT 95

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005516 "calmodulin binding" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0031347 "regulation of defense response" evidence=IMP

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0008284 "positive regulation of cell proliferation" evidence=RCA

TAIR|locus:2167155 NAC086 "NAC domain containing protein 86" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 2.5e-08, P = 2.5e-08
 Identities = 29/84 (34%), Positives = 42/84 (50%)

Query:     6 GFRFQPSNEQIICLLEKKRLNPRFLHHTIKDIDDICSLEPWDLAGASKTESEDQVCXXXX 65
             GFRF P++E++I    K+++N + +   I    D+   EPWDL G S   S+DQ      
Sbjct:     9 GFRFHPTDEELITYYLKRKINGQEIELEIIPEVDLYKCEPWDLPGKSLIPSKDQEWFFFS 68

Query:    66 XXXXXXXESTRAHRRTNAGYWKVT 89
                      +R +R T  GYWK T
Sbjct:    69 PRDRKYPNGSRTNRATKGGYWKAT 92

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2009729 NAC028 "NAC domain containing protein 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 3.0e-08, P = 3.0e-08
 Identities = 29/84 (34%), Positives = 42/84 (50%)

Query:     6 GFRFQPSNEQIICLLEKKRLNPRFLHHTIKDIDDICSLEPWDLAGASKTESEDQVCXXXX 65
             GFRF P++E+++    K+++N R +   I    D+   EPWDL G S   S+D       
Sbjct:     9 GFRFHPTDEELVIYYLKRKINGRTIELEIIPEIDLYKCEPWDLPGKSLLPSKDLEWFFFS 68

Query:    66 XXXXXXXESTRAHRRTNAGYWKVT 89
                      +R +R T AGYWK T
Sbjct:    69 PRDRKYPNGSRTNRATKAGYWKAT 92

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2097720 NAC045 "NAC domain containing protein 45" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 29/85 (34%), Positives = 43/85 (50%)

Query:     6 GFRFQPSNEQIICLLEKKRLNPRFLH-HTIKDIDDICSLEPWDLAGASKTESEDQVCXXX 64
             GFRF P++E++I    K+++N   +    I ++D +   EPWDL G S   S+DQ     
Sbjct:     9 GFRFHPTDEELITYYLKRKINGLEIELEVIAEVD-LYKCEPWDLPGKSLLPSKDQEWYFF 67

Query:    65 XXXXXXXXESTRAHRRTNAGYWKVT 89
                       +R +R T  GYWK T
Sbjct:    68 SPRDRKYPNGSRTNRATKGGYWKAT 92

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2075835 NAC052 "NAC domain containing protein 52" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 7.9e-08, P = 7.9e-08
 Identities = 30/85 (35%), Positives = 43/85 (50%)

Query:     6 GFRFQPSNEQIICL-LEKKRLNPRFLHHTIKDIDDICSLEPWDLAGASKTESEDQVCXXX 64
             GFRF P++E+++   L++K L        I ++D I   EPWDLA  S+ ++ DQ     
Sbjct:    30 GFRFHPTDEELVSYYLKRKVLGQPVRFDAIGEVD-IYKHEPWDLAVFSRLKTRDQEWYFY 88

Query:    65 XXXXXXXXESTRAHRRTNAGYWKVT 89
                        R +R TN GYWK T
Sbjct:    89 SALDKKYGNGARMNRATNRGYWKAT 113

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0009555 "pollen development" evidence=IMP

TAIR|locus:2202028 NAC007 "NAC 007" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 32/86 (37%), Positives = 44/86 (51%)

Query:     6 GFRFQPSNEQII-CLLEKKRLNPRFLHHTIKDIDDICSLEPWDLAGASKTESEDQVCXXX 64
             GFRF P++E+++   L KK  + R     IKDID +  +EPWDL    K   E+Q     
Sbjct:    10 GFRFHPTDEELVDYYLRKKVASKRIEIDFIKDID-LYKIEPWDLQELCKIGHEEQSDWYF 68

Query:    65 XXXXXXXXES-TRAHRRTNAGYWKVT 89
                      + TR +R T AG+WK T
Sbjct:    69 FSHKDKKYPTGTRTNRATKAGFWKAT 94

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0042546 "cell wall biogenesis" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2184342 NAC2 "NAC domain containing protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 2.4e-07, P = 2.4e-07
 Identities = 29/85 (34%), Positives = 41/85 (48%)

Query:     6 GFRFQPSNEQII-CLLEKKRLNPRFLHHTIKDIDDICSLEPWDLAGASKTESEDQVCXXX 64
             GFRF P++E+++   L++K  N  F    I  + DI   EPWDL   SK +S D      
Sbjct:    12 GFRFHPTDEELVRYYLKRKVCNKPFKFDAIS-VTDIYKSEPWDLPDKSKLKSRDLEWYFF 70

Query:    65 XXXXXXXXESTRAHRRTNAGYWKVT 89
                       ++ +R T  GYWK T
Sbjct:    71 SMLDKKYSNGSKTNRATEKGYWKTT 95

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IDA

GO:0009644 "response to high light intensity" evidence=IEP

GO:0009962 "regulation of flavonoid biosynthetic process" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2114678 NAC062 "NAC domain containing protein 62" [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 31/91 (34%), Positives = 49/91 (53%)

Query:     1 MESL-MGFRFQPSNEQIICLLEKKRLNPRFLH-HTIKDIDDICSLEPWDLAGASKTESED 58
             M+SL +G RF+P++E++I    ++++N        I++ID IC  EPWDL   S  +++D
Sbjct:    10 MDSLPVGLRFRPTDEELIRYYLRRKINGHDDDVKAIREID-ICKWEPWDLPDFSVIKTKD 68

Query:    59 QVCXXXXXXXXXXXESTRAHRRTNAGYWKVT 89
                             +R +R T AGYWK T
Sbjct:    69 SEWLYFCPLDRKYPSGSRQNRATVAGYWKAT 99

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009814 "defense response, incompatible interaction" evidence=IMP

GO:0070417 "cellular response to cold" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: NAC087 NAC domain protein, IPR003441 (208 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	89
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	5e-19

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score = 74.9 bits (185), Expect = 5e-19
 Identities = 33/86 (38%), Positives = 45/86 (52%), Gaps = 4/86 (4%)

Query: 6  GFRFQPSNEQIIC--LLEKKRLNPRFLHHTIKDIDDICSLEPWDLAGASKTESEDQVCYF 63
          GFRF P++E+++   L  K    P  L   I ++D I   EPWDL    K +  D+  YF
Sbjct: 4  GFRFHPTDEELVVYYLKRKVLGKPLPLLDVIPEVD-IYKFEPWDLPD-GKAKGGDREWYF 61

Query: 64 FYKPYYKYKESTRAHRRTNAGYWKVT 89
          F     KY   +R +R T +GYWK T
Sbjct: 62 FSPRDRKYPNGSRTNRATGSGYWKAT 87

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	89
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	100.0

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=100.00  E-value=1.8e-35  Score=193.75  Aligned_cols=83  Identities=35%  Similarity=0.592  Sum_probs=55.1

Q ss_pred             CCCCceecCChHHHHHHHHHhhhCCCCCCCCc-ceE--eeCCCCCCCchhhhccCCCCCceEEEEeccccccCCCCcccc
Q 043911            3 SLMGFRFQPSNEQIICLLEKKRLNPRFLHHTI-KDI--DDICSLEPWDLAGASKTESEDQVCYFFYKPYYKYKESTRAHR   79 (89)
Q Consensus         3 lp~GfrF~PTDeELi~~YL~~Ki~g~~~~~~~-~~I--~Dvy~~~Pw~L~~~~~~~~~~~~wYFF~~~~~k~~~g~R~~R   79 (89)
                      |||||||+|||+|||.+||++|+.|+  +++. ++|  +|||+.|||+|+....  .++++|||||++++++.+|.|.+|
T Consensus         1 LP~G~rF~PtD~ELi~~yL~~k~~g~--~~~~~~~i~~~Diy~~~P~~L~~~~~--~~~~~~yFF~~~~~~~~~~~r~~R   76 (129)
T PF02365_consen    1 LPPGFRFRPTDEELINHYLRPKILGE--PLPCEDVIHDVDIYSAHPWELPAKFK--GGDEEWYFFSPRKKKYPNGGRPNR   76 (129)
T ss_dssp             --TTEEE---HHHHHHCTHHHHHTT---HHCS-CHSEE--GGGS-GGGCHHHSS--S-SSEEEEEEE----------S-E
T ss_pred             CCCceEecCChHHHHHHHHHHHhcCC--CCCcccceeecccCccChHHhhhhcc--CCCceEEEEEecccccCCcccccc
Confidence            79999999999999999999999999  7777 566  9999999999995332  267799999999999999999999


Q ss_pred             cCCCceeecC
Q 043911           80 RTNAGYWKVT   89 (89)
Q Consensus        80 ~~~~G~Wk~t   89 (89)
                      ++++|+||++
T Consensus        77 ~~~~G~Wk~~   86 (129)
T PF02365_consen   77 VTGGGYWKST   86 (129)
T ss_dssp             EETTEEEEEE
T ss_pred             cccceEEeec
Confidence            9999999974

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	89
1ut7_A	171	No apical meristem protein; transcription regulati	3e-21
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	7e-21

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score = 81.2 bits (201), Expect = 3e-21
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 4/85 (4%)

Query: 6   GFRFQPSNEQIICL-LEKKRLNPRFLHHTIKDIDDICSLEPWDLAGASKTESEDQVCYFF 64
           GFRF P++E+++   L +K     F    I +ID +   +PW L   +     ++  YFF
Sbjct: 20  GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEID-LYKFDPWVLPNKAL--FGEKEWYFF 76

Query: 65  YKPYYKYKESTRAHRRTNAGYWKVT 89
                KY   +R +R   +GYWK T
Sbjct: 77  SPRDRKYPNGSRPNRVAGSGYWKAT 101

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score = 80.1 bits (198), Expect = 7e-21
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 4/85 (4%)

Query: 6  GFRFQPSNEQIICL-LEKKRLNPRFLHHTIKDIDDICSLEPWDLAGASKTESEDQVCYFF 64
          GFRF P++++++   L +K    R     I ++D +   +PWDL   +   + +   YFF
Sbjct: 18 GFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVD-LYKFDPWDLPERALFGARE--WYFF 74

Query: 65 YKPYYKYKESTRAHRRTNAGYWKVT 89
               KY   +R +R    GYWK T
Sbjct: 75 TPRDRKYPNGSRPNRAAGNGYWKAT 99

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	89
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	100.0
1ut7_A	171	No apical meristem protein; transcription regulati	100.0

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=100.00  E-value=8.5e-41  Score=229.40  Aligned_cols=85  Identities=27%  Similarity=0.568  Sum_probs=75.2

Q ss_pred             CCCCCCceecCChHHHHHHHHHhhhCCCCCCCCcceE--eeCCCCCCCchhhhccCCCCCceEEEEeccccccCCCCccc
Q 043911            1 MESLMGFRFQPSNEQIICLLEKKRLNPRFLHHTIKDI--DDICSLEPWDLAGASKTESEDQVCYFFYKPYYKYKESTRAH   78 (89)
Q Consensus         1 m~lp~GfrF~PTDeELi~~YL~~Ki~g~~~~~~~~~I--~Dvy~~~Pw~L~~~~~~~~~~~~wYFF~~~~~k~~~g~R~~   78 (89)
                      +.|||||||+|||||||.|||++|+.|.  +++.++|  +|||++|||+||+.+..  ++++|||||++.+|+++|.|++
T Consensus        13 ~~LPpGfRF~PTDeELV~~YL~~K~~g~--~~~~~~I~evDvy~~~Pw~Lp~~~~~--g~~ewYFFs~r~~ky~~g~R~n   88 (174)
T 3ulx_A           13 LNLPPGFRFHPTDDELVEHYLCRKAAGQ--RLPVPIIAEVDLYKFDPWDLPERALF--GAREWYFFTPRDRKYPNGSRPN   88 (174)
T ss_dssp             TTCCTTCCCCCCHHHHHHHTHHHHHHTC--CCSSSCCEECCGGGSCGGGSGGGCSS--CSSEEEEEEECCC-----CCSC
T ss_pred             cCCCCcceeCCCHHHHHHHHHHHHhcCC--CCCcCeeeecccccCCchhhhhhhcc--CCceEEEEeccccccCCCCCce
Confidence            3699999999999999999999999999  8898888  99999999999998764  6789999999999999999999


Q ss_pred             ccCCCceeecC
Q 043911           79 RRTNAGYWKVT   89 (89)
Q Consensus        79 R~~~~G~Wk~t   89 (89)
                      |+|++||||+|
T Consensus        89 R~t~~G~Wkat   99 (174)
T 3ulx_A           89 RAAGNGYWKAT   99 (174)
T ss_dssp             EEETTEEEEEC
T ss_pred             eecCCceEccC
Confidence            99999999987

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=100.00  E-value=1.8e-40  Score=227.18  Aligned_cols=85  Identities=27%  Similarity=0.557  Sum_probs=73.0

Q ss_pred             CCCCCCceecCChHHHHHHHHHhhhCCCCCCCCcceE--eeCCCCCCCchhhhccCCCCCceEEEEeccccccCCCCccc
Q 043911            1 MESLMGFRFQPSNEQIICLLEKKRLNPRFLHHTIKDI--DDICSLEPWDLAGASKTESEDQVCYFFYKPYYKYKESTRAH   78 (89)
Q Consensus         1 m~lp~GfrF~PTDeELi~~YL~~Ki~g~~~~~~~~~I--~Dvy~~~Pw~L~~~~~~~~~~~~wYFF~~~~~k~~~g~R~~   78 (89)
                      +.|||||||+|||||||.|||++|+.|.  +++.++|  +|||++|||+||+.+..  ++++|||||++.+|+++|.|++
T Consensus        15 ~~lPpGfRF~PTDeELv~~YL~~K~~g~--~~~~~~I~e~Diy~~~Pw~Lp~~~~~--g~~ewyFFs~r~~k~~~g~R~~   90 (171)
T 1ut7_A           15 LSLPPGFRFYPTDEELMVQYLCRKAAGY--DFSLQLIAEIDLYKFDPWVLPNKALF--GEKEWYFFSPRDRKYPNGSRPN   90 (171)
T ss_dssp             SCCCTTEEECCCHHHHHHHTHHHHHTTC--CCSSCCSEECCGGGSCGGGHHHHSSS--CSSEEEEEEECCC-------CC
T ss_pred             cCCCCcceeCCChHHHHHHHHHHHhcCC--CCCCCeEeecccccCChhHhhchhhc--CCccEEEEeccccccCCCCccc
Confidence            3689999999999999999999999999  8888888  99999999999998754  6889999999999999999999


Q ss_pred             ccCCCceeecC
Q 043911           79 RRTNAGYWKVT   89 (89)
Q Consensus        79 R~~~~G~Wk~t   89 (89)
                      |+|++||||+|
T Consensus        91 R~t~~G~Wk~t  101 (171)
T 1ut7_A           91 RVAGSGYWKAT  101 (171)
T ss_dssp             EEETTEEEEEE
T ss_pred             ccCCCCEEecc
Confidence            99999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	89
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	5e-15

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 63.9 bits (155), Expect = 5e-15
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 4/85 (4%)

Query: 6   GFRFQPSNEQIIC-LLEKKRLNPRFLHHTIKDIDDICSLEPWDLAGASKTESEDQVCYFF 64
           GFRF P++E+++   L +K     F    I +I D+   +PW L   +    ++   YFF
Sbjct: 20  GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEI-DLYKFDPWVLPNKALFGEKE--WYFF 76

Query: 65  YKPYYKYKESTRAHRRTNAGYWKVT 89
                KY   +R +R   +GYWK T
Sbjct: 77  SPRDRKYPNGSRPNRVAGSGYWKAT 101

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	89
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	100.0

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=7.6e-40  Score=220.85  Aligned_cols=85  Identities=27%  Similarity=0.557  Sum_probs=73.1

Q ss_pred             CCCCCCceecCChHHHHHHHHHhhhCCCCCCCCcceE--eeCCCCCCCchhhhccCCCCCceEEEEeccccccCCCCccc
Q 043911            1 MESLMGFRFQPSNEQIICLLEKKRLNPRFLHHTIKDI--DDICSLEPWDLAGASKTESEDQVCYFFYKPYYKYKESTRAH   78 (89)
Q Consensus         1 m~lp~GfrF~PTDeELi~~YL~~Ki~g~~~~~~~~~I--~Dvy~~~Pw~L~~~~~~~~~~~~wYFF~~~~~k~~~g~R~~   78 (89)
                      |+|||||||+|||||||.+||++|+.|.  +++.++|  +|||++|||+||+.+..  ++++|||||++++++++|.|.+
T Consensus        15 l~LPpG~RF~PTDeELv~~YL~~Ki~g~--~l~~~~I~~~Dvy~~~Pw~Lp~~~~~--~~~~wyFft~~~~k~~~g~r~~   90 (166)
T d1ut7a_          15 LSLPPGFRFYPTDEELMVQYLCRKAAGY--DFSLQLIAEIDLYKFDPWVLPNKALF--GEKEWYFFSPRDRKYPNGSRPN   90 (166)
T ss_dssp             SCCCTTEEECCCHHHHHHHTHHHHHTTC--CCSSCCSEECCGGGSCGGGHHHHSSS--CSSEEEEEEECCC-------CC
T ss_pred             ccCCCccccCCCcHHHHHHHHHHHHcCC--CCCcccceeccCCcCChhhccchhcc--CcceEEEEeeeccccCCCCccc
Confidence            5899999999999999999999999999  8999988  99999999999998654  6789999999999999999999


Q ss_pred             ccCCCceeecC
Q 043911           79 RRTNAGYWKVT   89 (89)
Q Consensus        79 R~~~~G~Wk~t   89 (89)
                      |++++|+||+|
T Consensus        91 R~~g~G~Wk~~  101 (166)
T d1ut7a_          91 RVAGSGYWKAT  101 (166)
T ss_dssp             EEETTEEEEEE
T ss_pred             cccCCCEeccc
Confidence            99999999975