Citrus Sinensis ID: 043916

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
IFSLWAVSLRKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRGA
Secondary Structure (PSIPRED)
cEEEcEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHcHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
IFSLWAVSLRkygglsystknVGQVLAISGFNLLFSQltlypyveriiGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTktagpavrga
Flexible Loop (DISEMBL)
IFSLWAVSLRKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLtktagpavrga
Low Complexity Region (SEG)
IFSLWAVSLRKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERiigpiiitriAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRGA
Disordered region (IsUnstruct)
*FSLWAVSLRKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLT**********
Disordered Region (DISOPRED)
IFSLWA*SLRKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG*
Disordered Region (DISEMBL)
IFSLWAVSLRKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKT********
Disordered Region (DISPRO)
IFSLWAVSLRKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVR**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
IFSLWAVSLRKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRGA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	138	2.2.26 [Sep-21-2011]
Q94BZ1	478	Protein ZINC INDUCED FACI	no	no	0.992	0.286	0.605	1e-39
Q3EAQ5	484	Probable peptide/nitrate	no	no	0.971	0.276	0.574	5e-38
Q8RWN2	486	Protein ZINC INDUCED FACI	no	no	0.992	0.281	0.613	1e-36

>sp|Q94BZ1|ZIFL1_ARATH Protein ZINC INDUCED FACILITATOR-LIKE 1 OS=Arabidopsis thaliana GN=ZIFL1 PE=2 SV=1

 Score =  161 bits (407), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 83/137 (60%), Positives = 101/137 (73%)

Query: 1   IFSLWAVSLRKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVL 60
           IFSLWA S RKYGGL YST +VG VLA SGF LL  QL+LY Y ER++GPII+TRI+G L
Sbjct: 296 IFSLWANSPRKYGGLGYSTADVGSVLAFSGFGLLIFQLSLYSYAERLLGPIIVTRISGSL 355

Query: 61  SITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGL 120
           ++ +L+ Y  IA LSG +L + +  ASV K+VL  S IT LF+LQN+AV Q QRGAANG+
Sbjct: 356 AMVVLSCYPLIAKLSGLALTVTVTSASVAKSVLGTSAITGLFILQNKAVRQDQRGAANGI 415

Query: 121 VMTVVSLTKTAGPAVRG 137
            MT +SL K  GPA  G
Sbjct: 416 AMTAMSLFKAIGPAAAG 432

Major facilitator superfamily (MFS) transporter probably involved in 2,4-dichlorophenoxyacetic acid (2,4-D) export.
Arabidopsis thaliana (taxid: 3702)

>sp|Q3EAQ5|PTR36_ARATH Probable peptide/nitrate transporter At3g43790 OS=Arabidopsis thaliana GN=ZIFL2 PE=2 SV=2

 Score =  155 bits (393), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 77/134 (57%), Positives = 106/134 (79%)

Query: 1   IFSLWAVSLRKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVL 60
           IFSLWAVS R YGGLS+S+++VG+VLAISG  LL  QL +YP +E+ +G + + R++ VL
Sbjct: 297 IFSLWAVSDRSYGGLSFSSQDVGEVLAISGLGLLVFQLLVYPPLEKSVGLLAVIRLSAVL 356

Query: 61  SITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGL 120
            I LL+ Y YIA+LSG +L L INCAS++KN LS+S++T LF++ N+AV Q+QRGAANG+
Sbjct: 357 LIPLLSCYPYIALLSGVTLHLVINCASIIKNALSISLVTGLFIMLNKAVPQNQRGAANGI 416

Query: 121 VMTVVSLTKTAGPA 134
            MT +S+ K+ GPA
Sbjct: 417 SMTAMSVFKSFGPA 430

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWN2|ZIF1_ARATH Protein ZINC INDUCED FACILITATOR 1 OS=Arabidopsis thaliana GN=ZIF1 PE=1 SV=2

 Score =  151 bits (381), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 84/137 (61%), Positives = 103/137 (75%)

Query: 1   IFSLWAVSLRKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVL 60
           IF+LWA S RKYGGLSYST  VG VLAISG  L   Q+ +YP  E+++GP+++TR AG L
Sbjct: 304 IFALWANSPRKYGGLSYSTNEVGTVLAISGLGLFSFQVFVYPLAEKLLGPVLVTRYAGAL 363

Query: 61  SITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGL 120
            I +  SY +IA LSG SL+L +NCAS++ NVLSVS IT L +LQNRAV+Q QRGAANG+
Sbjct: 364 MIPIQMSYPFIAGLSGLSLSLMLNCASILINVLSVSAITGLLILQNRAVDQSQRGAANGI 423

Query: 121 VMTVVSLTKTAGPAVRG 137
            MT +SL KT GPA  G
Sbjct: 424 AMTAMSLFKTVGPAGAG 440

Major facilitator superfamily (MFS) transporter involved in zinc tolerance by participating in vacuolar sequestration of zinc.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
359487104	1624	PREDICTED: uncharacterized protein LOC10	0.992	0.084	0.737	2e-49
296085441	163	unnamed protein product [Vitis vinifera]	0.992	0.840	0.744	5e-49
255567998	384	Multidrug resistance protein mdtG, putat	0.934	0.335	0.759	6e-49
296085436	518	unnamed protein product [Vitis vinifera]	0.992	0.264	0.737	6e-48
225465405	487	PREDICTED: protein ZINC INDUCED FACILITA	0.934	0.264	0.744	6e-45
224097490	495	predicted protein [Populus trichocarpa]	1.0	0.278	0.659	2e-44
225465403	487	PREDICTED: protein ZINC INDUCED FACILITA	0.934	0.264	0.713	1e-43
356548793	488	PREDICTED: protein ZINC INDUCED FACILITA	1.0	0.282	0.608	7e-42
297807399	479	hypothetical protein ARALYDRAFT_488196 [	0.992	0.286	0.642	1e-40
357456173	245	hypothetical protein MTR_3g010820 [Medic	1.0	0.563	0.623	4e-40

>gi|359487104|ref|XP_002274088.2| PREDICTED: uncharacterized protein LOC100259102 [Vitis vinifera]

 Score =  200 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 101/137 (73%), Positives = 113/137 (82%)

Query: 1    IFSLWAVSLRKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVL 60
            IFSLWAVS RKYGGLSYST +VG VLAISGF +L  QL LYPY+E+++GPIII RIAGVL
Sbjct: 1442 IFSLWAVSPRKYGGLSYSTDDVGVVLAISGFGVLVFQLFLYPYLEKLLGPIIICRIAGVL 1501

Query: 61   SITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGL 120
            SI LL  Y  IAMLSGF+L+L +NCAS MKNVLSVSI T L +LQNRAVEQHQRGAANG+
Sbjct: 1502 SIPLLAIYPLIAMLSGFNLSLALNCASAMKNVLSVSIGTSLIILQNRAVEQHQRGAANGI 1561

Query: 121  VMTVVSLTKTAGPAVRG 137
             MT +SL K AGPA  G
Sbjct: 1562 TMTTMSLFKAAGPAGGG 1578

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085441|emb|CBI29173.3| unnamed protein product [Vitis vinifera]

 Score =  198 bits (504), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 102/137 (74%), Positives = 114/137 (83%)

Query: 1   IFSLWAVSLRKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVL 60
           IFSLWAVS RKYGGLSYST +VG VLAISGF +L  QL+LYPY+E+++GPIII RIAGVL
Sbjct: 9   IFSLWAVSPRKYGGLSYSTDDVGVVLAISGFGVLVFQLSLYPYLEKLLGPIIICRIAGVL 68

Query: 61  SITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGL 120
           SI LL  Y  IAMLSGFSL+L +NCAS MKNVLSVSI T L +LQNRAVEQHQRGAANG+
Sbjct: 69  SIPLLAIYPLIAMLSGFSLSLALNCASAMKNVLSVSIGTGLIILQNRAVEQHQRGAANGI 128

Query: 121 VMTVVSLTKTAGPAVRG 137
            MT +SL K AGPA  G
Sbjct: 129 TMTTMSLFKAAGPAGGG 145

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567998|ref|XP_002524976.1| Multidrug resistance protein mdtG, putative [Ricinus communis] gi|223535720|gb|EEF37383.1| Multidrug resistance protein mdtG, putative [Ricinus communis]

 Score =  198 bits (504), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 98/129 (75%), Positives = 114/129 (88%)

Query: 1   IFSLWAVSLRKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVL 60
           IFSLWAVS R++GGLSYST++VG+VLAISGF+LL  QL+LYPY+ERI GPI + RIAGVL
Sbjct: 232 IFSLWAVSPRRFGGLSYSTQDVGEVLAISGFSLLVFQLSLYPYMERIFGPITLFRIAGVL 291

Query: 61  SITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGL 120
           SI LL SY +IAMLSGFSL L +NCAS++KNVLSVSIIT LFLLQNRAV+QHQRGAANG+
Sbjct: 292 SIPLLASYPFIAMLSGFSLTLMLNCASILKNVLSVSIITGLFLLQNRAVDQHQRGAANGI 351

Query: 121 VMTVVSLTK 129
            MT +SL K
Sbjct: 352 AMTAMSLFK 360

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085436|emb|CBI29168.3| unnamed protein product [Vitis vinifera]

 Score =  195 bits (495), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 101/137 (73%), Positives = 113/137 (82%)

Query: 1   IFSLWAVSLRKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVL 60
           IFSLWAVS RKYGGLSYST +VG VLAISGF +L  QL LYPY+E+++GPIII RIAGVL
Sbjct: 336 IFSLWAVSPRKYGGLSYSTDDVGVVLAISGFGVLVFQLFLYPYLEKLLGPIIICRIAGVL 395

Query: 61  SITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGL 120
           SI LL  Y  IAMLSGF+L+L +NCAS MKNVLSVSI T L +LQNRAVEQHQRGAANG+
Sbjct: 396 SIPLLAIYPLIAMLSGFNLSLALNCASAMKNVLSVSIGTSLIILQNRAVEQHQRGAANGI 455

Query: 121 VMTVVSLTKTAGPAVRG 137
            MT +SL K AGPA  G
Sbjct: 456 TMTTMSLFKAAGPAGGG 472

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465405|ref|XP_002277751.1| PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1 [Vitis vinifera] gi|296085442|emb|CBI29174.3| unnamed protein product [Vitis vinifera]

 Score =  185 bits (469), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 96/129 (74%), Positives = 108/129 (83%)

Query: 1   IFSLWAVSLRKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVL 60
           IFSLWAVS R +GGLSYST +VG VLAISGF LL SQLTLYP VER +GP++I RIAGVL
Sbjct: 305 IFSLWAVSPRIHGGLSYSTDDVGVVLAISGFGLLVSQLTLYPLVERFLGPVMICRIAGVL 364

Query: 61  SITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGL 120
           SI LL SY  IAMLSG SL++ +NCASV+KNVLSVSIIT LFLLQN AV+QHQRG ANG+
Sbjct: 365 SIPLLASYPLIAMLSGSSLSVVLNCASVLKNVLSVSIITGLFLLQNSAVDQHQRGTANGI 424

Query: 121 VMTVVSLTK 129
            MT +SL K
Sbjct: 425 SMTAMSLFK 433

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097490|ref|XP_002310957.1| predicted protein [Populus trichocarpa] gi|222850777|gb|EEE88324.1| predicted protein [Populus trichocarpa]

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 91/138 (65%), Positives = 113/138 (81%)

Query: 1   IFSLWAVSLRKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVL 60
           IFSLWA S RK GGL Y+T++VG+VLAISGF+LL  QL+LYP+VERI+GPI + +IA  L
Sbjct: 306 IFSLWAESSRKLGGLGYTTEDVGEVLAISGFSLLVFQLSLYPFVERILGPIPVAQIAAAL 365

Query: 61  SITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGL 120
           SI LL+SY +IAMLSG  L++ INCAS+MKNV SVSI+T +F+LQN AV+Q+QRGAANG+
Sbjct: 366 SILLLSSYPFIAMLSGLGLSILINCASIMKNVFSVSIVTGMFILQNNAVDQNQRGAANGI 425

Query: 121 VMTVVSLTKTAGPAVRGA 138
            MT +SL K  GPA  GA
Sbjct: 426 SMTGMSLFKAVGPAGGGA 443

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465403|ref|XP_002277598.1| PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1 [Vitis vinifera] gi|296085440|emb|CBI29172.3| unnamed protein product [Vitis vinifera]

 Score =  180 bits (457), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 92/129 (71%), Positives = 107/129 (82%)

Query: 1   IFSLWAVSLRKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVL 60
           IFSLWAVS R +GGLSYST +VG VLAISGF L  SQ+TLYP VER +GP++I RIAGVL
Sbjct: 305 IFSLWAVSPRIHGGLSYSTDDVGVVLAISGFGLFVSQVTLYPLVERFLGPVMICRIAGVL 364

Query: 61  SITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGL 120
           SI LL SY  IAMLSG +L++ +NCASV+KNVLSVSIIT +FLLQN AV+QHQRG ANG+
Sbjct: 365 SIPLLASYPLIAMLSGSTLSVVLNCASVLKNVLSVSIITGMFLLQNSAVDQHQRGTANGI 424

Query: 121 VMTVVSLTK 129
            MT +SL K
Sbjct: 425 SMTAMSLFK 433

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548793|ref|XP_003542784.1| PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1-like [Glycine max]

 Score =  175 bits (443), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 84/138 (60%), Positives = 111/138 (80%)

Query: 1   IFSLWAVSLRKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVL 60
           +FSLWAVS ++ GGL+++T NVG VL+ISG  L+  QLTLYP+VE+  GPI+I R +G+L
Sbjct: 299 VFSLWAVSPQRLGGLNFTTDNVGDVLSISGLALIIYQLTLYPFVEKASGPIVIARFSGML 358

Query: 61  SITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGL 120
           +I LL SY +IA+LSG +L + I+ AS++KN++S++IIT LFLLQNRAVEQHQRGAANG+
Sbjct: 359 TIPLLQSYPFIALLSGLALYIVISIASILKNIMSITIITSLFLLQNRAVEQHQRGAANGI 418

Query: 121 VMTVVSLTKTAGPAVRGA 138
            MT +SL K  GPA  GA
Sbjct: 419 SMTAMSLFKAIGPATGGA 436

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807399|ref|XP_002871583.1| hypothetical protein ARALYDRAFT_488196 [Arabidopsis lyrata subsp. lyrata] gi|297317420|gb|EFH47842.1| hypothetical protein ARALYDRAFT_488196 [Arabidopsis lyrata subsp. lyrata]

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 88/137 (64%), Positives = 104/137 (75%)

Query: 1   IFSLWAVSLRKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVL 60
           IFSLWA S RKYGGL YST +VG VLAISGF LL  QL+LY Y ER++GPII+TRI+G+L
Sbjct: 297 IFSLWANSPRKYGGLGYSTADVGSVLAISGFGLLIFQLSLYSYAERLLGPIIVTRISGIL 356

Query: 61  SITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGL 120
           ++ +L+ Y  IA LSG +L L +N ASV KNVLS S IT LF+LQN AV Q QRGAANG+
Sbjct: 357 AMVILSCYPLIAKLSGLALTLAVNSASVAKNVLSTSAITGLFILQNNAVRQDQRGAANGI 416

Query: 121 VMTVVSLTKTAGPAVRG 137
            MT +SL K  GPA  G
Sbjct: 417 AMTAMSLFKAIGPAAAG 433

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357456173|ref|XP_003598367.1| hypothetical protein MTR_3g010820 [Medicago truncatula] gi|355487415|gb|AES68618.1| hypothetical protein MTR_3g010820 [Medicago truncatula]

 Score =  169 bits (428), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 86/138 (62%), Positives = 109/138 (78%)

Query: 1   IFSLWAVSLRKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVL 60
           +FSLWAVS R+ GGL+++T+NVG VLAISG  L+  QL+LYP +E+  GP    RI+GVL
Sbjct: 56  VFSLWAVSPRRLGGLNFTTENVGDVLAISGIGLIVYQLSLYPSLEKSFGPARFARISGVL 115

Query: 61  SITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGL 120
           +I +L SY +IAMLSG +L L IN AS++KN+LSV+IIT LFL+QNRAVEQ QRGAANG+
Sbjct: 116 AIPILQSYPFIAMLSGITLYLVINIASLLKNILSVTIITGLFLMQNRAVEQRQRGAANGI 175

Query: 121 VMTVVSLTKTAGPAVRGA 138
            MT +S+ KT GPA  GA
Sbjct: 176 AMTGMSIFKTIGPAGGGA 193

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
TAIR|locus:2173254	486	ZIF1 "zinc induced facilitator	0.992	0.281	0.583	1.7e-34
TAIR|locus:2101109	484	ZIFL2 "AT3G43790" [Arabidopsis	0.992	0.283	0.554	2.8e-34
TAIR|locus:2177105	478	ZIFL1 "zinc induced facilitato	0.992	0.286	0.554	1.4e-32
ASPGD|ASPL0000053890	591	AN0890 [Emericella nidulans (t	0.905	0.211	0.277	6.3e-06
DICTYBASE|DDB_G0269964	665	DDB_G0269964 "Uncharacterized	0.992	0.206	0.256	2.5e-05

TAIR|locus:2173254 ZIF1 "zinc induced facilitator 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 80/137 (58%), Positives = 94/137 (68%)

Query:     1 IFSLWAVSLRKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERXXXXXXXXXXAGVL 60
             IF+LWA S RKYGGLSYST  VG VLAISG  L   Q+ +YP  E+          AG L
Sbjct:   304 IFALWANSPRKYGGLSYSTNEVGTVLAISGLGLFSFQVFVYPLAEKLLGPVLVTRYAGAL 363

Query:    61 SITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGL 120
              I +  SY +IA LSG SL+L +NCAS++ NVLSVS IT L +LQNRAV+Q QRGAANG+
Sbjct:   364 MIPIQMSYPFIAGLSGLSLSLMLNCASILINVLSVSAITGLLILQNRAVDQSQRGAANGI 423

Query:   121 VMTVVSLTKTAGPAVRG 137
              MT +SL KT GPA  G
Sbjct:   424 AMTAMSLFKTVGPAGAG 440

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0010043 "response to zinc ion" evidence=IEP

GO:0055069 "zinc ion homeostasis" evidence=IMP

TAIR|locus:2101109 ZIFL2 "AT3G43790" [Arabidopsis thaliana (taxid:3702)]

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 76/137 (55%), Positives = 101/137 (73%)

Query:     1 IFSLWAVSLRKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERXXXXXXXXXXAGVL 60
             IFSLWAVS R YGGLS+S+++VG+VLAISG  LL  QL +YP +E+          + VL
Sbjct:   297 IFSLWAVSDRSYGGLSFSSQDVGEVLAISGLGLLVFQLLVYPPLEKSVGLLAVIRLSAVL 356

Query:    61 SITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGL 120
              I LL+ Y YIA+LSG +L L INCAS++KN LS+S++T LF++ N+AV Q+QRGAANG+
Sbjct:   357 LIPLLSCYPYIALLSGVTLHLVINCASIIKNALSISLVTGLFIMLNKAVPQNQRGAANGI 416

Query:   121 VMTVVSLTKTAGPAVRG 137
              MT +S+ K+ GPA  G
Sbjct:   417 SMTAMSVFKSFGPAGGG 433

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

TAIR|locus:2177105 ZIFL1 "zinc induced facilitator-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 76/137 (55%), Positives = 91/137 (66%)

Query:     1 IFSLWAVSLRKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERXXXXXXXXXXAGVL 60
             IFSLWA S RKYGGL YST +VG VLA SGF LL  QL+LY Y ER          +G L
Sbjct:   296 IFSLWANSPRKYGGLGYSTADVGSVLAFSGFGLLIFQLSLYSYAERLLGPIIVTRISGSL 355

Query:    61 SITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGL 120
             ++ +L+ Y  IA LSG +L + +  ASV K+VL  S IT LF+LQN+AV Q QRGAANG+
Sbjct:   356 AMVVLSCYPLIAKLSGLALTVTVTSASVAKSVLGTSAITGLFILQNKAVRQDQRGAANGI 415

Query:   121 VMTVVSLTKTAGPAVRG 137
              MT +SL K  GPA  G
Sbjct:   416 AMTAMSLFKAIGPAAAG 432

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0080167 "response to karrikin" evidence=IEP

ASPGD|ASPL0000053890 AN0890 [Emericella nidulans (taxid:162425)]

 Score = 115 (45.5 bits), Expect = 6.3e-06, P = 6.3e-06
 Identities = 35/126 (27%), Positives = 54/126 (42%)

Query:    13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERXXXXXXXXXXAGVLSITLLTSYTYIA 72
             GGL  STK +G +LA+ G   + +QL L+P+V R            ++   L     Y+ 
Sbjct:   364 GGLGLSTKTIGLMLAVQGVYSMIAQLWLFPFVVRHFGTLRTFRFVLLVWPPLYLLVPYLI 423

Query:    73 MLSGFSLALFINCASVMKNVLSV-SIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTA 131
             +L           A + K    V +  +   LL N A      G+ NG   +  SL++  
Sbjct:   424 LLPEKLQMTAAYVALICKITFHVIAFPSTAILLANAAPSSKVLGSINGAAASTASLSRAF 483

Query:   132 GPAVRG 137
             GP+V G
Sbjct:   484 GPSVTG 489

GO:0003674 "molecular_function" evidence=ND

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

DICTYBASE|DDB_G0269964 DDB_G0269964 "Uncharacterized membrane protein YCR023C" [Dictyostelium discoideum (taxid:44689)]

 Score = 110 (43.8 bits), Expect = 2.5e-05, P = 2.5e-05
 Identities = 38/148 (25%), Positives = 66/148 (44%)

Query:     1 IFSLWAVSLRKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERXXXXXXXXXXAGVL 60
             +F LWA +    GGLS ++  VG    I G +++F QL L   V R             +
Sbjct:   452 VFPLWAFAQVSSGGLSMTSGTVGVCGIIGGASIIFIQLFLIKPVTRKLGLIQTFIYGCSI 511

Query:    61 SITLLTSYTYIAML----SGFS-----LALFINCASVM--KNVLSVSIITRLFLLQNRAV 109
             +     SY  +  +       S     +  +++   V+  +N+ +  I T +  L N + 
Sbjct:   512 AFCSFLSYPLLNFIRAPHESISSVTQDIIFWVSVTIVISIRNIGAQLIFTPIMALINNSA 571

Query:   110 EQHQRGAANGLVMTVVSLTKTAGPAVRG 137
             +   RG+ANGL  ++V+ T+T  P + G
Sbjct:   572 KIAVRGSANGLGQSLVAATRTVAPTLGG 599


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.135   0.378    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      138       128   0.00091  102 3  11 22  0.45    30
                                                     29  0.41    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  551 (59 KB)
  Total size of DFA:  105 KB (2071 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.52u 0.12s 10.64t   Elapsed:  00:00:01
  Total cpu time:  10.52u 0.12s 10.64t   Elapsed:  00:00:01
  Start:  Fri May 10 23:03:55 2013   End:  Fri May 10 23:03:56 2013

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00033971001	SubName- Full=Chromosome undetermined scaffold_71, whole genome shotgun sequence; (488 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00036173001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (439 aa)			•						0.459
	GSVIVG00015514001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (456 aa)			•						0.434

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	138
KOG2615	451	consensus Permease of the major facilitator superf	99.64
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.5
PRK03545	390	putative arabinose transporter; Provisional	99.49
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.48
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.44
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.43
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.43
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.43
PRK03633	381	putative MFS family transporter protein; Provision	99.41
TIGR00900	365	2A0121 H+ Antiporter protein.	99.41
PRK12382	392	putative transporter; Provisional	99.41
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.39
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.38
TIGR00893	399	2A0114 d-galactonate transporter.	99.38
PRK10054	395	putative transporter; Provisional	99.38
PRK09705	393	cynX putative cyanate transporter; Provisional	99.37
KOG2532	466	consensus Permease of the major facilitator superf	99.37
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.37
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.37
PRK10091	382	MFS transport protein AraJ; Provisional	99.37
TIGR00891	405	2A0112 putative sialic acid transporter.	99.36
PRK11663	434	regulatory protein UhpC; Provisional	99.35
PRK05122	399	major facilitator superfamily transporter; Provisi	99.35
PRK10504	471	putative transporter; Provisional	99.31
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.31
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.3
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.29
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.29
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.29
PRK12307	426	putative sialic acid transporter; Provisional	99.28
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.28
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.28
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.26
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.25
TIGR00895	398	2A0115 benzoate transport.	99.25
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.25
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.24
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.23
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.23
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.2
PRK10133	438	L-fucose transporter; Provisional	99.18
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.18
PRK03699	394	putative transporter; Provisional	99.18
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.18
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.17
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.17
PRK03893	496	putative sialic acid transporter; Provisional	99.17
TIGR00900	365	2A0121 H+ Antiporter protein.	99.17
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.16
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.16
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.16
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.15
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.14
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.14
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.13
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.13
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.13
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.12
PRK11043	401	putative transporter; Provisional	99.12
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.1
PRK10489	417	enterobactin exporter EntS; Provisional	99.1
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.09
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.09
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.09
TIGR00898	505	2A0119 cation transport protein.	99.08
TIGR00901	356	2A0125 AmpG-related permease.	99.08
TIGR00895	398	2A0115 benzoate transport.	99.08
PRK10489	417	enterobactin exporter EntS; Provisional	99.08
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.07
TIGR00891	405	2A0112 putative sialic acid transporter.	99.07
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.05
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.05
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.05
PLN00028	476	nitrate transmembrane transporter; Provisional	99.05
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.04
PRK09874	408	drug efflux system protein MdtG; Provisional	99.03
PRK15075	434	citrate-proton symporter; Provisional	99.02
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.98
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.98
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.98
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.97
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.97
PRK15011	393	sugar efflux transporter B; Provisional	98.97
TIGR00901	356	2A0125 AmpG-related permease.	98.96
PRK03893	496	putative sialic acid transporter; Provisional	98.96
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.96
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.95
PRK10504	471	putative transporter; Provisional	98.95
PRK12382	392	putative transporter; Provisional	98.94
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.93
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.92
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.92
PRK11902	402	ampG muropeptide transporter; Reviewed	98.92
PRK10642	490	proline/glycine betaine transporter; Provisional	98.91
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.91
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.9
PTZ00207	591	hypothetical protein; Provisional	98.9
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.9
PRK15011	393	sugar efflux transporter B; Provisional	98.87
TIGR00893	399	2A0114 d-galactonate transporter.	98.87
PRK03633	381	putative MFS family transporter protein; Provision	98.86
TIGR00805	633	oat sodium-independent organic anion transporter.	98.86
PRK12307	426	putative sialic acid transporter; Provisional	98.85
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.85
PRK09952	438	shikimate transporter; Provisional	98.85
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.85
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.84
PRK05122	399	major facilitator superfamily transporter; Provisi	98.83
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.81
PRK03545	390	putative arabinose transporter; Provisional	98.81
PRK09874	408	drug efflux system protein MdtG; Provisional	98.8
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.8
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.79
PRK09528	420	lacY galactoside permease; Reviewed	98.79
KOG2615	451	consensus Permease of the major facilitator superf	98.77
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.77
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.77
PRK11010	491	ampG muropeptide transporter; Validated	98.74
PRK09528	420	lacY galactoside permease; Reviewed	98.73
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.73
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.73
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.71
PRK09705	393	cynX putative cyanate transporter; Provisional	98.7
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.68
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.67
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.67
PRK09848	448	glucuronide transporter; Provisional	98.64
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.63
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.61
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.61
PRK03699	394	putative transporter; Provisional	98.61
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.6
PRK10091	382	MFS transport protein AraJ; Provisional	98.6
PRK09952	438	shikimate transporter; Provisional	98.59
PRK11010	491	ampG muropeptide transporter; Validated	98.59
KOG2533	495	consensus Permease of the major facilitator superf	98.58
PRK10054	395	putative transporter; Provisional	98.58
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.55
PRK15075	434	citrate-proton symporter; Provisional	98.55
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.55
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	98.54
PRK11902	402	ampG muropeptide transporter; Reviewed	98.54
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.53
KOG0254	513	consensus Predicted transporter (major facilitator	98.53
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.52
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.51
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.49
TIGR00898	505	2A0119 cation transport protein.	98.46
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.43
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.41
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.41
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.4
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.39
PRK11663	434	regulatory protein UhpC; Provisional	98.39
PRK11043	401	putative transporter; Provisional	98.39
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.38
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.38
PRK10642	490	proline/glycine betaine transporter; Provisional	98.37
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.35
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.35
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.35
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.34
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.33
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.32
PRK09669	444	putative symporter YagG; Provisional	98.3
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.29
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.29
PRK10133	438	L-fucose transporter; Provisional	98.24
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.18
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.16
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.16
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.14
PRK10429	473	melibiose:sodium symporter; Provisional	98.13
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.12
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.12
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.11
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.1
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.08
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	97.99
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	97.98
KOG0569	485	consensus Permease of the major facilitator superf	97.97
PRK09669	444	putative symporter YagG; Provisional	97.93
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	97.93
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.89
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	97.86
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.83
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	97.82
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	97.81
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.79
PF13347	428	MFS_2: MFS/sugar transport protein	97.78
COG0477	338	ProP Permeases of the major facilitator superfamil	97.73
PLN00028	476	nitrate transmembrane transporter; Provisional	97.71
PRK10429	473	melibiose:sodium symporter; Provisional	97.69
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	97.66
KOG0569	485	consensus Permease of the major facilitator superf	97.61
KOG3764	464	consensus Vesicular amine transporter [Intracellul	97.56
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.54
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	97.52
PRK09848	448	glucuronide transporter; Provisional	97.5
TIGR00788	468	fbt folate/biopterin transporter. The only functio	97.43
PRK11462	460	putative transporter; Provisional	97.42
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	97.39
PRK11462	460	putative transporter; Provisional	97.38
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	97.35
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.34
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	97.33
COG2211	467	MelB Na+/melibiose symporter and related transport	97.29
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	97.28
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	97.28
PRK15403	413	multidrug efflux system protein MdtM; Provisional	97.15
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	97.13
PF13347	428	MFS_2: MFS/sugar transport protein	97.11
KOG3762	618	consensus Predicted transporter [General function	97.04
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.02
KOG2325	488	consensus Predicted transporter/transmembrane prot	96.84
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	96.63
PF12832	77	MFS_1_like: MFS_1 like family	96.6
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	96.53
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	96.49
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	96.44
KOG2532	466	consensus Permease of the major facilitator superf	96.36
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.33
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	96.31
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	96.26
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	95.76
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	95.75
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	95.58
KOG0254	513	consensus Predicted transporter (major facilitator	95.4
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	95.37
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	95.29
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	95.08
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	94.86
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	94.61
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	94.6
KOG2816	463	consensus Predicted transporter ADD1 (major facili	93.91
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	93.76
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	93.68
KOG2563	480	consensus Permease of the major facilitator superf	93.26
COG2211	467	MelB Na+/melibiose symporter and related transport	92.97
KOG0637	498	consensus Sucrose transporter and related proteins	92.24
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	90.19
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	90.13
TIGR00805	633	oat sodium-independent organic anion transporter.	89.8
PRK03612	521	spermidine synthase; Provisional	89.55
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	88.39
KOG3626	735	consensus Organic anion transporter [Secondary met	88.37
KOG3098	461	consensus Uncharacterized conserved protein [Funct	88.35
KOG2533	495	consensus Permease of the major facilitator superf	87.33
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	80.08

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.64  E-value=1.4e-16  Score=123.02  Aligned_cols=131  Identities=27%  Similarity=0.391  Sum_probs=104.1

Q ss_pred             EEeeeecCCCC--CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHH-HHHHHHHHHHHHHHHHhhhhhhhhHH
Q 043916            2 FSLWAVSLRKY--GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPII-ITRIAGVLSITLLTSYTYIAMLSGFS   78 (138)
Q Consensus         2 ~pl~~~~~~~~--gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~   78 (138)
                      |+.|.+++..-  ++||+++.|.|.+++..|+.+.+.|..++|++.+-.|..+ .....+.+..+.++++.....     
T Consensus       277 ~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~-----  351 (451)
T KOG2615|consen  277 FSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLART-----  351 (451)
T ss_pred             HHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcccc-----
Confidence            34555555544  9999999999999999999999999999999877776533 344444444444443333222     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916           79 LALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRGA  138 (138)
Q Consensus        79 ~~~~l~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G~  138 (138)
                       ...+.....++++.++...|..+.++++..|+++||++||+.+|+.+++|++||+++|.
T Consensus       352 -~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~  410 (451)
T KOG2615|consen  352 -PVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGV  410 (451)
T ss_pred             -chhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhhe
Confidence             23566788899999999999999999999999999999999999999999999999973

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.50  E-value=1.1e-13  Score=110.47  Aligned_cols=121  Identities=7%  Similarity=-0.012  Sum_probs=109.6

Q ss_pred             CCCCCCCCCChhH-HHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 043916            9 LRKYGGLSYSTKN-VGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCAS   87 (138)
Q Consensus         9 ~~~~gglg~s~~~-ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~   87 (138)
                      |...+++|+|.+| .|.+++.....+.+.|+ +.+++.||+|.|+++..+.+.|.+..+++++.+.+      ..+.+.+
T Consensus        50 p~L~~elglT~~qv~G~I~s~F~ysYal~qI-p~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl------~~L~i~R  122 (511)
T TIGR00806        50 PYLLTVLNFTEETVTNEIIPVLPYSHLAVLV-PVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSV------WHMQLME  122 (511)
T ss_pred             HHHHHHcCCCHHHhcchHHHHHHHHHHHHHH-HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
Confidence            3445689999999 99999999999999977 77999999999999999999999999999987653      2456788


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           88 VMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        88 ~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      ++.+++++..+ +....+.+++|++||++++|+..+...+|.+++|++++
T Consensus       123 ~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~q  171 (511)
T TIGR00806       123 VFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQ  171 (511)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999 99999999999999999999999999999999998765

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.49  E-value=3.5e-13  Score=104.64  Aligned_cols=121  Identities=13%  Similarity=0.021  Sum_probs=104.1

Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 043916           10 RKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVM   89 (138)
Q Consensus        10 ~~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~   89 (138)
                      .....+|+|+.|+|+..+.+.+...+.|. +.+++.||+|+||++..+..+..+..+.+.+.++.     | .+...+.+
T Consensus        34 ~l~~~~~~s~~~~g~~~~~~~~~~~~~~~-~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-----~-~l~~~r~~  106 (390)
T PRK03545         34 DIAQSFHMQTAQVGLMLTIYAWVVALMSL-PLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNF-----T-VLLISRIG  106 (390)
T ss_pred             HHHhHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccH-----H-HHHHHHHH
Confidence            34567999999999999999999999876 45899999999999999999999888877766542     2 23456677


Q ss_pred             HHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           90 KNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        90 ~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      .+++.+...|...+++++..|+|+||+++|+.++..+++..+||.+++
T Consensus       107 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~  154 (390)
T PRK03545        107 IAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGR  154 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHH
Confidence            788888888999999999999999999999999999999999998875

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.48  E-value=3.9e-13  Score=105.62  Aligned_cols=121  Identities=15%  Similarity=0.061  Sum_probs=106.1

Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 043916           10 RKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVM   89 (138)
Q Consensus        10 ~~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~   89 (138)
                      ....++|+|..|+|++.+.+.+...+.|. +.+++.||+|+|+++..+..++.+..++.++..+.      ..+...+.+
T Consensus        33 ~l~~~~~~s~~~~g~~~s~~~~~~~~~~~-~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~r~l  105 (412)
T TIGR02332        33 TMGKDLGLSATMFGLAATLFYAAYVICGI-PSNIMLAIIGARRWIAGIMVLWGIASTATMFATGP------ESLYLLRIL  105 (412)
T ss_pred             hhHhhcCCCHHHHHHHHHHHHHHHHHHHh-hHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCH------HHHHHHHHH
Confidence            34568999999999999999999999977 56899999999999999999999998888776542      234567788


Q ss_pred             HHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           90 KNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        90 ~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      .+++.+...|....++++..|+++||+++|+.+...+++..+||.+++
T Consensus       106 ~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~  153 (412)
T TIGR02332       106 VGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSG  153 (412)
T ss_pred             HHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999988764

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.44  E-value=9e-13  Score=102.96  Aligned_cols=116  Identities=9%  Similarity=-0.036  Sum_probs=100.9

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV   92 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~   92 (138)
                      .++|.++.+.+++.+.+.+...+.+. +.+++.||+|+||++.++..++.+..+++.+...      .   ...+.++++
T Consensus        31 ~~~~~s~~~~~~~~~~~~l~~~l~~~-~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~------~---~~~r~l~G~  100 (393)
T PRK11195         31 KELHYPDWSQPLLQMFFVLAYIVLAP-FVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIH------P---LLAYGLVGI  100 (393)
T ss_pred             HHcCCcHHHHHHHHHHHHHHHHHHHh-hhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHH------H---HHHHHHHHH
Confidence            45788999999999999999999955 7899999999999999999998887766544322      1   245667899


Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916           93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRGA  138 (138)
Q Consensus        93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G~  138 (138)
                      +.+...|+..+++.+.+|+|+|+++||+.+...+++..+||.++|+
T Consensus       101 ~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~  146 (393)
T PRK11195        101 GAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGA  146 (393)
T ss_pred             HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999873

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.43  E-value=1e-12  Score=102.65  Aligned_cols=119  Identities=13%  Similarity=0.101  Sum_probs=103.5

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916           12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN   91 (138)
Q Consensus        12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~   91 (138)
                      ..++|++++|+|+..+.+.+...+.+. +.+++.||+|+||++..+..+..+..++..+.++.     | .+...+.+.+
T Consensus        47 ~~~~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~-----~-~l~~~r~l~G  119 (394)
T PRK10213         47 AQDLGISEGVAGQSVTVTAFVAMFASL-FITQTIQATDRRYVVILFAVLLTLSCLLVSFANSF-----S-LLLIGRACLG  119 (394)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChH-----H-HHHHHHHHHH
Confidence            457899999999999999999999966 66899999999999999999999888777665432     2 3446677888


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      ++.+...|...+++++.+|+|+|++++|+..+..+++..+||.+++
T Consensus       120 ~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~  165 (394)
T PRK10213        120 LALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGS  165 (394)
T ss_pred             HhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888899999999999999999999999999999999999998875

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.43  E-value=3.3e-12  Score=96.43  Aligned_cols=119  Identities=16%  Similarity=0.102  Sum_probs=101.7

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916           12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN   91 (138)
Q Consensus        12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~   91 (138)
                      ...+|+|+.|+|++.+...+...+.+. +.+++.||+|+|+++..+..+..+......+.++     .| .+...+.+.+
T Consensus        24 ~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~l~g   96 (352)
T PF07690_consen   24 AEELGLSPSQIGLLFSAFFLGSALFSP-FAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASN-----FW-LLLIARFLLG   96 (352)
T ss_dssp             HCCSTTTSHCHHHHHHHHHHHHHHHHH-HHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCC-----HH-HHHHHHHHHH
T ss_pred             HHccCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhh-----HH-HHhhhccccc
Confidence            356899999999999999999999965 7799999999999999999998888433333222     24 4567788889


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      ++.+...|....++.+..|+|+|++.+|+.+...+++..+||.+++
T Consensus        97 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~  142 (352)
T PF07690_consen   97 IGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGG  142 (352)
T ss_dssp             HHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccchhhhhhhccccccchhhhhhhcccchhh
Confidence            9999999999999999999999999999999999999999998765

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.43  E-value=1.6e-12  Score=102.85  Aligned_cols=121  Identities=17%  Similarity=0.084  Sum_probs=106.1

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916           11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK   90 (138)
Q Consensus        11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~   90 (138)
                      ....+|.|++++|++.+.+.+...+. .++.+++.||+|+|+.+..+..+..+......+.++.      ..+...+.+.
T Consensus        28 ~~~~~g~s~~~~~~~~~~~~~~~~~~-~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~~~~  100 (485)
T TIGR00711        28 IAGDLGSSLSQVQWVITSYMLANAIS-IPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNL------ELMIIFRVIQ  100 (485)
T ss_pred             HHHhcCCChhhhhHHHHHHHHHHHHH-HHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCH------HHHHHHHHHH
Confidence            44568999999999999999999999 4588999999999999999999999888877765442      2344677888


Q ss_pred             HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916           91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRGA  138 (138)
Q Consensus        91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G~  138 (138)
                      +++.+...|...+++.+.+|+|+||+++|+.++...++..+||.++|+
T Consensus       101 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  148 (485)
T TIGR00711       101 GFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGW  148 (485)
T ss_pred             HhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhH
Confidence            889999999999999999999999999999999999999999998763

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.41  E-value=3.6e-12  Score=98.72  Aligned_cols=118  Identities=16%  Similarity=-0.002  Sum_probs=102.6

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV   92 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~   92 (138)
                      ..+|+|..|+|++.+.+.+...+.+. +.+++.||+|+|+.+..+..+..+.+...++.++.     | .+...+++.++
T Consensus        34 ~~~~~s~~~~G~~~s~~~l~~~~~~~-~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~-----~-~l~~~~~l~G~  106 (381)
T PRK03633         34 AQEHLPTWQVGVVSSSYFTGNLVGTL-LAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGF-----W-SWLAWRFVAGI  106 (381)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-----H-HHHHHHHHHHH
Confidence            45899999999999999999999965 78999999999999999999999888877765432     2 34456788888


Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      +.+...|.....+++..|+++||+++|..++...+|..+||.+++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  151 (381)
T PRK03633        107 GCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVS  151 (381)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            888888988888889999999999999999999999999998876

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.41  E-value=3.9e-12  Score=96.36  Aligned_cols=122  Identities=14%  Similarity=0.117  Sum_probs=102.2

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916           14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL   93 (138)
Q Consensus        14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~   93 (138)
                      .++.++.|+|++.+...+...+.+. +.+++.||+|+||++..+..+......+.++.....+...|. +...+.+..++
T Consensus        28 ~~~~s~~~~g~~~~~~~~~~~i~~~-~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~g~~  105 (365)
T TIGR00900        28 AGTGSASVLSLAALAGMLPYVVLSP-IAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQ-VYVLAGILAIA  105 (365)
T ss_pred             HhhccHHHHHHHHHHHHHHHHHHHH-hhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHH-HHHHHHHHHHH
Confidence            3688999999999999999999955 779999999999999999988888877777665221111232 34566777888


Q ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           94 SVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        94 ~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      .+...|...+++.+..|+|+|++.+|+.+...+++..+||.+++
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~  149 (365)
T TIGR00900       106 QAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGG  149 (365)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998865

>PRK12382 putative transporter; Provisional

Probab=99.41  E-value=1.4e-12  Score=101.18  Aligned_cols=124  Identities=10%  Similarity=0.006  Sum_probs=98.6

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhh--hHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLS--GFSLALFINCASVMK   90 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~l~~~~~~~   90 (138)
                      .++|+|+.|+|++.+.+.+...+.|. +.+++.||+|+||.+..+...+.+..+.+.......  ....+..+...+.+.
T Consensus        44 ~~lg~s~~~~g~~~s~~~~~~~i~~~-~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~  122 (392)
T PRK12382         44 HDLGFGNTMVGIAVGIQFLATVLTRG-YAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLIL  122 (392)
T ss_pred             HhcCCcHHHHHHHHHHHHHHHHHHhh-hhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHH
Confidence            45899999999999999999999966 789999999999999998877665543222111100  000122345677888


Q ss_pred             HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      +++.+...|...+++.+..|+|+||+++|+.+...+++..+||.+++
T Consensus       123 G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~  169 (392)
T PRK12382        123 GFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGL  169 (392)
T ss_pred             HHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHH
Confidence            88998888989999999999999999999999999999999998765

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.39  E-value=3.1e-12  Score=102.68  Aligned_cols=120  Identities=17%  Similarity=0.091  Sum_probs=103.9

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916           11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK   90 (138)
Q Consensus        11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~   90 (138)
                      ....+|.+..|++|+.+.+.+.....|. +.+++.||+|+|+++..+..++.++.+..++.++.     | .+...+.++
T Consensus        32 i~~~l~~s~~~~~~~~~~~~l~~~~~~~-~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~-----~-~li~~r~l~  104 (495)
T PRK14995         32 LSMTLGASGNELLWIIDIYSLVMAGMVL-PMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTA-----S-WLIATRALL  104 (495)
T ss_pred             HHHHhCCCHhHHHHHHHHHHHHHHHHHH-HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCH-----H-HHHHHHHHH
Confidence            4467999999999999999999999976 77999999999999999999999998888776542     2 345677888


Q ss_pred             HHHHHHHHHHHHHHHhhc-ccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           91 NVLSVSIITRLFLLQNRA-VEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        91 ~~~~~~~~p~~~~li~~~-~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      +++.+...|.....+.+. .|+++|++.+|+......++..+||.++|
T Consensus       105 G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg  152 (495)
T PRK14995        105 AIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGG  152 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999989888877666 47899999999999999999999999876

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.38  E-value=5.3e-12  Score=98.83  Aligned_cols=119  Identities=13%  Similarity=0.070  Sum_probs=102.6

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916           12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN   91 (138)
Q Consensus        12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~   91 (138)
                      ...+|+|+.++|+..+...+...+.+ .+.+++.||+|+|++...+.....+.++.+++.++     .|. +...+.+.+
T Consensus        38 ~~~~g~s~~~~gl~~~~~~l~~~~~~-~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~-----~~~-l~~~~~l~g  110 (400)
T PRK11646         38 VDQLGWAAVMVGIALGLRQFIQQGLG-IFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHE-----PWL-LWLSCILSG  110 (400)
T ss_pred             HHHhCCcHHHHHHHHHHHHHHHHHHH-hhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhcc-----HHH-HHHHHHHHH
Confidence            35689999999999999999999885 47799999999999999999999998888776543     132 335566778


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      ++.+...|...+++.+.+|+|+||+++|+.++..+++..+||.++|
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g  156 (400)
T PRK11646        111 LGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGS  156 (400)
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888999999999999999999999999999999999999876

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.38  E-value=1.5e-12  Score=99.07  Aligned_cols=120  Identities=12%  Similarity=0.104  Sum_probs=104.4

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916           11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK   90 (138)
Q Consensus        11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~   90 (138)
                      ....+|+|+.|+|++.+.+.+...+.+. +.+++.||+|+|+.+..+..+..+...++++..+.     | .+...+.+.
T Consensus        20 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~-~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~l~   92 (399)
T TIGR00893        20 LQEDLGLSAAQYGYVFSAFSWGYVVGQF-PGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAY-----V-SLYILRVLL   92 (399)
T ss_pred             HHHhhCCChhhHHHHHHHHHHHHHHHHH-hHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCH-----H-HHHHHHHHH
Confidence            4457899999999999999999999965 78999999999999999999888888877765532     2 344667788


Q ss_pred             HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      +++.+...|....++++..|+|+||+.+|+.++...++..+||.+++
T Consensus        93 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  139 (399)
T TIGR00893        93 GAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVG  139 (399)
T ss_pred             HHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence            88889999999999999999999999999999999999999998765

>PRK10054 putative transporter; Provisional

Probab=99.38  E-value=3.4e-12  Score=99.78  Aligned_cols=119  Identities=13%  Similarity=0.032  Sum_probs=97.6

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916           12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN   91 (138)
Q Consensus        12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~   91 (138)
                      ..++|+|..++|+..+.+.+...+.|. +.+++.||+|+|++...+.....+.++++++.++.     |..+ ....+..
T Consensus        35 ~~~~g~s~~~~g~~~s~~~~~~~~~~~-~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~g  107 (395)
T PRK10054         35 SRQYSLSVDLIGYAMTIALTIGVVFSL-GFGILADKFDKKRYMLLAITAFASGFIAIPLVNNV-----TLVV-LFFALIN  107 (395)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHH-----HHHH-HHHHHHH
Confidence            346999999999999999999999975 67999999999999999998888888877765432     2222 2233434


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      .+.+...|....+.++..|+|+|++++|+..+..+++.++||.+++
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~  153 (395)
T PRK10054        108 CAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGT  153 (395)
T ss_pred             HHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555667889999999999999999999999999999999998875

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.37  E-value=2.6e-12  Score=100.23  Aligned_cols=118  Identities=11%  Similarity=-0.023  Sum_probs=102.6

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916           11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK   90 (138)
Q Consensus        11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~   90 (138)
                      ...++|+|..|.|+..+.+.+...+.|. ..+++.||+|+|+++..+..+++++.+..++.++.     + .+...+++.
T Consensus        35 i~~~~~~s~~~~g~~~s~~~~~~~l~~~-~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~-----~-~ll~~r~l~  107 (393)
T PRK09705         35 LRQASGMSFSVAALLTALPVVTMGGLAL-AGSWLHQHVSERRSVAISLLLIAVGALMRELYPQS-----A-LLLSSALLG  107 (393)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHhh-hhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcch-----H-HHHHHHHHH
Confidence            4567999999999999999999999965 77999999999999999999999999988887653     2 345678899


Q ss_pred             HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCc
Q 043916           91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVR  136 (138)
Q Consensus        91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~  136 (138)
                      +++.+...+....++++..| |+||+++|+.++....+..+|+.++
T Consensus       108 Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~  152 (393)
T PRK09705        108 GVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAIT  152 (393)
T ss_pred             HhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999989999999886 8899999999988888887777654

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.37  E-value=3.7e-12  Score=102.04  Aligned_cols=121  Identities=12%  Similarity=0.131  Sum_probs=110.1

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916           12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN   91 (138)
Q Consensus        12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~   91 (138)
                      .+.++||++|.|++++......++.|+ ...++.+|+|.|+++..+.+++++..+++|++.....   | .+...+++++
T Consensus        65 ~~~~~ws~~~k~~i~ss~~~G~i~~~i-P~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~---~-~~~~~R~lqG  139 (466)
T KOG2532|consen   65 AGEYDWSSTEKGLIFSSFFWGYILGQI-PGGYLADKFGARRVFFISGLISALLTLLTPLAASIGF---Y-LLLVLRFLQG  139 (466)
T ss_pred             CceecCCHHHHHHHHHHHHHHHHHHHc-CcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcc---h-hhHHHHHHhH
Confidence            568999999999999999999999977 6689999999999999999999999999999876532   3 4568999999


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      ++.+..+|++..+.++++|++||++..++..+...++.+++-+++|
T Consensus       140 l~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg  185 (466)
T KOG2532|consen  140 LGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSG  185 (466)
T ss_pred             HHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            9999999999999999999999999999999999999888776655

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.37  E-value=3.9e-12  Score=97.54  Aligned_cols=120  Identities=12%  Similarity=0.045  Sum_probs=103.0

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916           11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK   90 (138)
Q Consensus        11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~   90 (138)
                      ...++|.|++++|++.+.+.+...+.+. +.+++.||+|+|+.+..+..+..+..+.+++.++.     + .+...+.+.
T Consensus        31 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~l~  103 (385)
T TIGR00710        31 IAADLSTPASIVQMTLTLYLLGFAAGQL-LWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNI-----E-TLLVLRFVQ  103 (385)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHH-hhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccH-----H-HHHHHHHHH
Confidence            3456899999999999999999999965 77999999999999999999888888877765432     2 233556777


Q ss_pred             HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      .++.+...|...+++.+..|+|+||+++|+.++...++..+||.++|
T Consensus       104 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  150 (385)
T TIGR00710       104 AFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGG  150 (385)
T ss_pred             HcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888999999999999999999999999999999999998765

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.37  E-value=3.6e-12  Score=101.10  Aligned_cols=120  Identities=13%  Similarity=0.060  Sum_probs=104.2

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV   92 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~   92 (138)
                      .++++|..+.|++++.+.+.+.+.|. +.+++.||+|+|+++..+..++.+..++.++.....    ...+...+++.++
T Consensus        69 ~~~~~s~~~~g~~~s~~~~~~~~~~~-~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~----~~~l~~~r~~~G~  143 (465)
T TIGR00894        69 PNFKWSGALQGLILSSHFYGQIIIQI-PVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGG----IALVVFCRVIQGL  143 (465)
T ss_pred             CCCCCCHHHhhHHHHHHHHHHHHHHc-chHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcC----chHHHHHHHHHHH
Confidence            37999999999999999999999976 679999999999999999999988888776542211    1234567888899


Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      +.+..+|....+++++.|+++||+++|+.++...++..++|.+++
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~  188 (465)
T TIGR00894       144 AQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISG  188 (465)
T ss_pred             hcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998764

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.37  E-value=6.3e-12  Score=97.50  Aligned_cols=120  Identities=7%  Similarity=0.043  Sum_probs=103.7

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916           11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK   90 (138)
Q Consensus        11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~   90 (138)
                      ...++|+|..++|+..+.+.+...+.|. +.+++.||+|+|+++..+..++.+..++..+.++.     | .+...+.+.
T Consensus        29 ~~~~~g~s~~~~g~~~s~~~~~~~~~~~-~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~-----~-~l~~~r~l~  101 (382)
T PRK10091         29 LAHDVGISIPAAGHMISYYALGVVVGAP-IIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSY-----L-MLAIGRLVS  101 (382)
T ss_pred             HHHHcCCCHHHHhHHHHHHHHHHHHHHH-HHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcH-----H-HHHHHHHHH
Confidence            3457899999999999999999999965 77999999999999999999999988888776542     2 234567788


Q ss_pred             HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      +++.+...|....++++..|+++|++++|+..+..+++..+||.+++
T Consensus       102 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~  148 (382)
T PRK10091        102 GFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGT  148 (382)
T ss_pred             HhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHH
Confidence            88888888888899999999999999999999999999999998865

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.36  E-value=9.1e-12  Score=95.82  Aligned_cols=119  Identities=12%  Similarity=0.069  Sum_probs=102.7

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916           12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN   91 (138)
Q Consensus        12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~   91 (138)
                      .+.+|+|+.|+|++.+...+...+.+. +.+++.||+|+|+++..+.....+..++.++.++.     + .+...+.+.+
T Consensus        39 ~~~~~~s~~~~g~~~~~~~~~~~~~~~-~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-----~-~l~~~~~l~G  111 (405)
T TIGR00891        39 AGEFGLTTVDAASLISAALISRWFGAL-MFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGY-----I-TMFIARLVIG  111 (405)
T ss_pred             HHHhCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccH-----H-HHHHHHHHHH
Confidence            456899999999999999999999965 77999999999999999999888888777765432     2 2345677888


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      ++.+...|...+++++..|+|+|++++|+.++...+|..++|.+++
T Consensus       112 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~  157 (405)
T TIGR00891       112 IGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYS  157 (405)
T ss_pred             hhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888899999999999999999999999999999999999997654

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.35  E-value=4.7e-12  Score=99.97  Aligned_cols=120  Identities=13%  Similarity=0.024  Sum_probs=102.2

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916           11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK   90 (138)
Q Consensus        11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~   90 (138)
                      ...++|+|+.|.|++.+.+.+...+.|. +.+++.||+|+|+++..+..++.+..+++++.++.     | .+...+.+.
T Consensus        49 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~-~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-----~-~l~~~~~l~  121 (434)
T PRK11663         49 MLADLGLSRSDIGLLATLFYITYGVSKF-VSGIVSDRSNARYFMGIGLIATGIINILFGFSSSL-----W-AFALLWVLN  121 (434)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHh-hhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHH-----H-HHHHHHHHH
Confidence            3456899999999999999999999966 77999999999999999999999988888776442     2 233445566


Q ss_pred             HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      .++.+..+|....++++.+|+++||+++|+.++...++..++|.++|
T Consensus       122 g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~  168 (434)
T PRK11663        122 AFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVG  168 (434)
T ss_pred             HHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777788999999999999999999999999999999999998764

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.35  E-value=1.7e-12  Score=100.80  Aligned_cols=124  Identities=13%  Similarity=0.028  Sum_probs=100.8

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhH--HHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGF--SLALFINCASVMK   90 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~~~l~~~~~~~   90 (138)
                      ..+|+|+.++|++.+.+.+...+.|. +.+++.||+|+||++..+...+.+..+.+.+.....+.  .....+...+++.
T Consensus        44 ~~~g~s~~~~g~~~~~~~~~~~i~~~-~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~  122 (399)
T PRK05122         44 DQLGFSAFLAGLVISLQYLATLLSRP-HAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLL  122 (399)
T ss_pred             HhcCccHHHHHHHHHHHHHHHHHhch-hhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHH
Confidence            45899999999999999999999976 77999999999999999998877765544433221110  1122355677888


Q ss_pred             HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      +++.+...|....++.+..|+|+||+++|+.+...+++..+||.+++
T Consensus       123 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~  169 (399)
T PRK05122        123 GIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGV  169 (399)
T ss_pred             HhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999998765

>PRK10504 putative transporter; Provisional

Probab=99.31  E-value=1.6e-11  Score=97.37  Aligned_cols=118  Identities=19%  Similarity=0.041  Sum_probs=100.8

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV   92 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~   92 (138)
                      .++|+|+.+.|++.+.+.+...+.+. +.+++.||+|+||++..+..++....+...+.++.     + .+...+.+.++
T Consensus        38 ~~~g~s~~~~~~~~~~~~~~~~~~~~-~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~-----~-~l~~~~~l~g~  110 (471)
T PRK10504         38 QSLGESPLHMHMVIVSYVLTVAVMLP-ASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTL-----N-ELLLARVLQGV  110 (471)
T ss_pred             HHhCcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCH-----H-HHHHHHHHHHh
Confidence            46899999999999999998888854 78999999999999999888888777665544321     2 23456788889


Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      +.+...|...+.+.+..|+++|++.+|+.+...+++..+||.++|
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g  155 (471)
T PRK10504        111 GGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGG  155 (471)
T ss_pred             hhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            999899999999999999999999999999999999999999876

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.31  E-value=4.3e-11  Score=95.81  Aligned_cols=114  Identities=10%  Similarity=0.011  Sum_probs=90.3

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAM-LSGFSLALFINCASVMKN   91 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~l~~~~~~~~   91 (138)
                      .++|+|..|++++.+...+...+.|++. +++.||+|.|+++..+..++.+..+++++... ....  +..+....++..
T Consensus        63 ~~~~ls~~q~g~l~ai~~l~~al~rip~-G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s--~~~lli~r~l~G  139 (462)
T PRK15034         63 IGFNFTTDQLFLLTALPSVSGALLRVPY-SFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTP--FGIFIVIALLCG  139 (462)
T ss_pred             hhcCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCC--HHHHHHHHHHHH
Confidence            3799999999999999999999998854 99999999999999999999988888876511 0001  123345566666


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhh
Q 043916           92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKT  130 (138)
Q Consensus        92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~  130 (138)
                      ++ +..++.....++++.|+|+||+++|+.+....+|..
T Consensus       140 ig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~  177 (462)
T PRK15034        140 FA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVS  177 (462)
T ss_pred             HH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHH
Confidence            66 558899999999999999999999999644444443

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.30  E-value=2.7e-11  Score=94.55  Aligned_cols=122  Identities=16%  Similarity=0.174  Sum_probs=108.9

Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 043916           10 RKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVM   89 (138)
Q Consensus        10 ~~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~   89 (138)
                      .+...++-+..|+|++++...+.+.+++ .+++.+.||+|.+-.+..|+.+.....+++.+....      ..+.+++.+
T Consensus        96 ~~~~~~~~e~~~iG~LFaskA~~qllvn-p~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy------~~l~vAR~L  168 (464)
T KOG3764|consen   96 AEAISLDRENTQIGLLFASKALVQLLVN-PFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSY------PMLFVARSL  168 (464)
T ss_pred             hhccCccccccchhHHHHHHHHHHHHhc-ccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchh------HHHHHHHHH
Confidence            3455677888999999999999999994 477899999999999999999999999988876653      356789999


Q ss_pred             HHHHHHHHHHHHHHHHhhcccc-hhhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916           90 KNVLSVSIITRLFLLQNRAVEQ-HQRGAANGLVMTVVSLTKTAGPAVRGA  138 (138)
Q Consensus        90 ~~~~~~~~~p~~~~li~~~~p~-~~~G~~~G~~~s~~sl~r~igP~i~G~  138 (138)
                      ++++++++..+..+++.+..|+ +|||+++|+.-...++|-.+||++||.
T Consensus       169 QgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGi  218 (464)
T KOG3764|consen  169 QGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGI  218 (464)
T ss_pred             hhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccc
Confidence            9999999999999999999997 678999999999999999999999984

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.29  E-value=4.3e-11  Score=91.97  Aligned_cols=118  Identities=10%  Similarity=0.109  Sum_probs=101.0

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV   92 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~   92 (138)
                      .++|+|+.|+|+..+.+.+...+.+. +.+++.||+|+|+++..+.....+....+++..+.     + .+...+.+.++
T Consensus        19 ~~~~~s~~~~~~~~~~~~~~~~~~~~-~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~-----~-~~~~~~~l~g~   91 (377)
T PRK11102         19 ADFGVSAGSVQMTLSAYILGFAIGQL-FYGPMADSFGRKPVILGGTLVFALAAVACALAQTI-----D-QLIYMRFLHGL   91 (377)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHH-hhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccH-----H-HHHHHHHHHHH
Confidence            46899999999999999999999965 77999999999999999999888888877765432     2 23355667788


Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      +.+...+...+++.+..|+|+|++++|+.+....++..++|.+++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  136 (377)
T PRK11102         92 AAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGG  136 (377)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888899999999999999999999999999999999998764

>TIGR00897 2A0118 polyol permease family

Probab=99.29  E-value=3.6e-11  Score=93.94  Aligned_cols=122  Identities=15%  Similarity=0.106  Sum_probs=95.6

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV   92 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~   92 (138)
                      .++|+|+.|+|+..+.+++...+.+. +.+++.||+|+||++..+..++....+++.........  +..+...+.+.++
T Consensus        41 ~~~g~s~~~~g~~~~~~~~~~~i~~~-~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~i~G~  117 (402)
T TIGR00897        41 KALGLSPQQSASAFTLYGIAAAISAW-ISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHAN--YPLILLFYGIRGL  117 (402)
T ss_pred             HHhCCCHHHhHHHHHHHHHHHHHHHH-HHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCcc--HHHHHHHHHHHHc
Confidence            45799999999999999999999965 77999999999999999999888876654322111111  2223345666677


Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHh-hHccCCcC
Q 043916           93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTK-TAGPAVRG  137 (138)
Q Consensus        93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r-~igP~i~G  137 (138)
                      +.+...+.....+.+..|+|+||+++|+.++..+++. .+||.++|
T Consensus       118 g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~  163 (402)
T TIGR00897       118 GYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSS  163 (402)
T ss_pred             chHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777788888899999999999999999999997 57887664

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.29  E-value=2.8e-12  Score=102.07  Aligned_cols=124  Identities=11%  Similarity=-0.006  Sum_probs=101.4

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916           11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK   90 (138)
Q Consensus        11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~   90 (138)
                      ...++|+|..|.|++.+.+.+.+.+.|. +.+++.||+|+|+++..+..++.+....++......... ...+...+.+.
T Consensus        55 i~~~~~~s~~~~g~~~s~~~~~~~~~~~-~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~r~l~  132 (467)
T PRK09556         55 MISTYGLSTTELGMIGLGFSITYGVGKT-LVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVS-LGLMIALWALS  132 (467)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHh-hhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccch-HHHHHHHHHHH
Confidence            3467999999999999999999999977 779999999999999999888888777666531100001 22344667788


Q ss_pred             HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCc
Q 043916           91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVR  136 (138)
Q Consensus        91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~  136 (138)
                      +++.+...|....+++++.|++|||+++|+.+...++|.+++|.+.
T Consensus       133 G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~  178 (467)
T PRK09556        133 GFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVA  178 (467)
T ss_pred             HHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHH
Confidence            8888888999999999999999999999999999999998887653

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.28  E-value=5.4e-11  Score=92.98  Aligned_cols=119  Identities=6%  Similarity=-0.038  Sum_probs=102.7

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916           11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK   90 (138)
Q Consensus        11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~   90 (138)
                      ...++|+|+.|.++..+.+.+...+.+. +.+++.||+|+|+++..+.....+.....++.++.     | .+...+.+.
T Consensus        44 i~~~~~~s~~~~~~~~~~~~~~~~l~~~-~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~-----~-~l~~~r~l~  116 (426)
T PRK12307         44 IKADLGLTDMEGAFLATAAFIGRPFGGA-LFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGV-----I-MLTLSRFIV  116 (426)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHH-----H-HHHHHHHHH
Confidence            3457899999999999999999999965 77999999999999999999999988877766542     2 344667788


Q ss_pred             HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCc
Q 043916           91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVR  136 (138)
Q Consensus        91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~  136 (138)
                      +++.+..+|....++.+..|+|+||+++|+.+...++|..++|.+.
T Consensus       117 G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~  162 (426)
T PRK12307        117 GMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFM  162 (426)
T ss_pred             HHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHH
Confidence            8888888999999999999999999999999999999999988654

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.28  E-value=4.7e-11  Score=92.78  Aligned_cols=117  Identities=17%  Similarity=0.113  Sum_probs=100.2

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV   92 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~   92 (138)
                      .++|+|++|+|++.+...+...+.+. +.+++.||+|+|+++..+..+..+..++.++..+.     + .+...+.+.++
T Consensus        43 ~~~~~s~~~~g~~~~~~~~~~~~~~~-~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~l~G~  115 (406)
T PRK11551         43 QEFGLDVAQMGWAFSAGILGLLPGAL-LGGRLADRIGRKRILIVSVALFGLFSLATAQAWDF-----P-SLLVARLLTGV  115 (406)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccH-----H-HHHHHHHHHHh
Confidence            46899999999999999999999855 77999999999999999998888877777665432     2 23456677788


Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCc
Q 043916           93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVR  136 (138)
Q Consensus        93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~  136 (138)
                      +.+...|...+++.+..|+|+||+++|+.+....++..++|.++
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  159 (406)
T PRK11551        116 GLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIG  159 (406)
T ss_pred             hHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888999999999999999999999999999999999998765

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.28  E-value=3e-11  Score=93.98  Aligned_cols=119  Identities=7%  Similarity=-0.106  Sum_probs=90.2

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916           11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK   90 (138)
Q Consensus        11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~   90 (138)
                      .+.++|+|..|+|++.+.+.+.+.+.|.+ .+++.||+|+|++...+...............+      +..+...+++.
T Consensus        17 i~~~~~~s~~~~g~~~s~~~~g~~i~~~~-~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~R~l~   89 (368)
T TIGR00903        17 VAEDIDVSKEELGLLAITYPAAFLALTIP-SGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFN------YEWLLACQLLA   89 (368)
T ss_pred             HHHHhCcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHccchHHHHHHHHHHHHHHHHHHHhcc------HHHHHHHHHHH
Confidence            34579999999999999999999999884 699999999888766555444333221111011      23455778888


Q ss_pred             HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      .++.+.. +.....+++..|+|+||+++|+.++...+|..++|.+++
T Consensus        90 G~g~~~~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~  135 (368)
T TIGR00903        90 ALGQPFL-LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGL  135 (368)
T ss_pred             HhHhHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888754 455566689999999999999999999999999998764

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.26  E-value=1e-10  Score=92.74  Aligned_cols=121  Identities=12%  Similarity=-0.019  Sum_probs=99.6

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhh------hhHHHHHHHHHHH
Q 043916           14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAML------SGFSLALFINCAS   87 (138)
Q Consensus        14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~------~~~~~~~~l~~~~   87 (138)
                      .+|++..+.|+..+.+.+...+.|. +.+++.||+|+||++..+..++.++.+...+....      .+...+..+...+
T Consensus        49 ~~~~~~~~~~~~~s~~~ig~~~~~~-~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R  127 (479)
T PRK10077         49 SESAANSLLGFCVASALIGCIIGGA-LGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYR  127 (479)
T ss_pred             cccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHH
Confidence            4689999999999999999999976 77999999999999999999887776655432110      0111223455788


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCC
Q 043916           88 VMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAV  135 (138)
Q Consensus        88 ~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i  135 (138)
                      .+.+++.+...|...+++++.+|+++||+..|+.+....+|..++|.+
T Consensus       128 ~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~  175 (479)
T PRK10077        128 IIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFV  175 (479)
T ss_pred             HHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999887754

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.25  E-value=4.9e-11  Score=92.49  Aligned_cols=119  Identities=8%  Similarity=0.069  Sum_probs=100.2

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916           12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN   91 (138)
Q Consensus        12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~   91 (138)
                      ..++|.|..++|+..+.+.+...+.|. +.+++.||+|+|+.+..+.....+...++...++.     + .+...+.+..
T Consensus        30 ~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~-----~-~~~~~~~l~g  102 (392)
T PRK10473         30 AADLNASEAQLHIAFSVYLAGMAAAML-FAGKIADRSGRKPVAIPGAALFIIASLLCSLAETS-----S-LFLAGRFLQG  102 (392)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHHH-hHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcH-----H-HHHHHHHHHH
Confidence            356899999999999999999999865 78999999999999999998888888777655432     2 2334566777


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      ++.+...+...+++++..|+|+|++.+|+.+....++..++|.+++
T Consensus       103 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~  148 (392)
T PRK10473        103 IGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGH  148 (392)
T ss_pred             hhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888889999999999999999999999999999999998754

>TIGR00895 2A0115 benzoate transport

Probab=99.25  E-value=2.9e-11  Score=92.56  Aligned_cols=121  Identities=12%  Similarity=0.124  Sum_probs=101.2

Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 043916           10 RKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVM   89 (138)
Q Consensus        10 ~~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~   89 (138)
                      ....++|+++.++|++.+...+...+.+. +.+++.||+|+|+.+..+.....+..+++.+..+.     + .+...+.+
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~  114 (398)
T TIGR00895        42 AISAEWGLDPVQLGFLFSAGLIGMAFGAL-FFGPLADRIGRKRVLLWSILLFSVFTLLCALATNV-----T-QLLILRFL  114 (398)
T ss_pred             HHhhccCCCHHHHHHHHHHHHHHHHHHHH-HhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccch-----H-HHHHHHHH
Confidence            34457899999999999999999998854 77999999999999999998888877776654332     2 23345667


Q ss_pred             HHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           90 KNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        90 ~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      .+++.+...|...+++.+..|+++||+++|+.+....++..+||.++|
T Consensus       115 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  162 (398)
T TIGR00895       115 AGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAG  162 (398)
T ss_pred             HhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHH
Confidence            777888888999999999999999999999999999999999998764

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.25  E-value=7.1e-11  Score=90.21  Aligned_cols=118  Identities=13%  Similarity=0.084  Sum_probs=96.2

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHHHHHH
Q 043916           11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIA-MLSGFSLALFINCASVM   89 (138)
Q Consensus        11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~l~~~~~~   89 (138)
                      ....+|+|+.++|++.+...+...+.+. +.+++.||+|+|+.+..+..+..+..+++++.. +.     | .+...+.+
T Consensus        28 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~-----~-~~~~~~~~  100 (366)
T TIGR00886        28 IKDDLGLSTAQLGNLVAVPVLAGAVLRI-ILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSY-----S-VLLLLRLF  100 (366)
T ss_pred             HHHHhCCCHHHhhHhhHHHHHHHHHHHH-HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhH-----H-HHHHHHHH
Confidence            3457999999999999999999999965 779999999999999999999999888877665 32     2 23345666


Q ss_pred             HHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCc
Q 043916           90 KNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVR  136 (138)
Q Consensus        90 ~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~  136 (138)
                      ..++.+. ++....++++..|+|+||+.+|+.++...++..++|.++
T Consensus       101 ~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~  146 (366)
T TIGR00886       101 IGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVM  146 (366)
T ss_pred             HHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHH
Confidence            6766554 455788999999999999999999988888887777654

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.24  E-value=7.1e-11  Score=93.05  Aligned_cols=123  Identities=6%  Similarity=-0.180  Sum_probs=102.4

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916           11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK   90 (138)
Q Consensus        11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~   90 (138)
                      .+.++|+|..|.|++.+...+...+.. ...+++.||+|+|+....+..++..+..++.......+   +..+...+++.
T Consensus        29 ~~~~~~~s~~~~g~l~s~~~~g~~i~~-~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~---~~~~l~~~~l~  104 (410)
T TIGR00885        29 FQQAFTLTAFQAALVQSAFYGGYFIMA-IPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMN---YTLFLVGLFIL  104 (410)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHH
Confidence            356789999999999999999999994 47899999999999999999999998877644322111   22334566777


Q ss_pred             HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      .++.+...+..+.++++..|+|+|++.+++.|+..++|..+||.+++
T Consensus       105 G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~  151 (410)
T TIGR00885       105 TAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQ  151 (410)
T ss_pred             HhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888989999999999999999999999999999999998754

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.23  E-value=1.2e-10  Score=91.60  Aligned_cols=118  Identities=10%  Similarity=0.039  Sum_probs=101.2

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV   92 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~   92 (138)
                      ..+|.|..+.++..+.+.+...+.|. +.+++.||+|+|+++..+..++.+..++..+.++.     + .+...++++++
T Consensus        44 ~~~~~~~~~~~~~~s~~~~~~~~~~~-~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~-----~-~l~~~r~l~Gi  116 (413)
T PRK15403         44 RDFNADVSLAPASVSLYLAGGMALQW-LLGPLSDRIGRRPVLITGALIFTLACAATLFTTSM-----T-QFLIARFIQGT  116 (413)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHH-hhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCH-----H-HHHHHHHHHHH
Confidence            46899999999999999999999987 68999999999999999999999888877765432     2 34467788888


Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      +.+...+...+.+.+..|+|++++.+|+..+...++..+||.+++
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~  161 (413)
T PRK15403        117 SICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGA  161 (413)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            877666677788889999999999999999999999999998875

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.23  E-value=5.8e-11  Score=89.11  Aligned_cols=118  Identities=16%  Similarity=0.173  Sum_probs=101.4

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV   92 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~   92 (138)
                      ..+|.+++++++..+...+...+.+. +.+++.||+|+|+....+.....+....+++.++.     + .+...+.+..+
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~l~g~   99 (352)
T cd06174          27 EDLGLSASQAGLIVSAFSLGYALGSL-LAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSL-----W-LLLVGRFLLGL   99 (352)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHH-hHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccH-----H-HHHHHHHHHHc
Confidence            34689999999999999999999955 77999999999999999999998888877765331     2 33456667778


Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      +.+...|...+++.+..|+|+|++.+|+.+...+++..+||.+++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  144 (352)
T cd06174         100 GGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGG  144 (352)
T ss_pred             ccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence            888888999999999999999999999999999999999998765

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.20  E-value=1.6e-11  Score=93.28  Aligned_cols=117  Identities=10%  Similarity=0.050  Sum_probs=100.9

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916           11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK   90 (138)
Q Consensus        11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~   90 (138)
                      ....+|+|..|+|++.+...+...+.+. +.+++.||+|+|+++..+..+..+..+++++..+.     | .+...+.+.
T Consensus        21 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~   93 (379)
T TIGR00881        21 LVEEIGLSKTDLGLLLSSFSIAYGISKF-VMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSL-----W-VMAALWALN   93 (379)
T ss_pred             HHHHhCCCHhHHHHHHHHHHHHHHhhhh-hhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhH-----H-HHHHHHHHH
Confidence            4456899999999999999999999965 77999999999999999999998888887766532     2 234566677


Q ss_pred             HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccC
Q 043916           91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPA  134 (138)
Q Consensus        91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~  134 (138)
                      +++.+...|...+++.+..|+|+||+.+|+.+....++..++|.
T Consensus        94 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~  137 (379)
T TIGR00881        94 GIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPP  137 (379)
T ss_pred             HhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHH
Confidence            78888888999999999999999999999999999999999983

>PRK10133 L-fucose transporter; Provisional

Probab=99.18  E-value=1.9e-10  Score=91.28  Aligned_cols=122  Identities=7%  Similarity=-0.129  Sum_probs=100.8

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916           11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK   90 (138)
Q Consensus        11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~   90 (138)
                      .+..+|.|+.|.|+..+.+.+...+.|. +.+++.||+|+|++...+..++.++.+++......++   +..+...+++.
T Consensus        52 i~~~~~~s~~~~gl~~~~~~~g~~i~~~-~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~---~~~ll~~r~l~  127 (438)
T PRK10133         52 FQQAFTLTNFQAGLIQSAFYFGYFIIPI-PAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMN---YTLFLVGLFII  127 (438)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHH
Confidence            3557899999999999999999999976 6799999999999999999999998866532111111   23455678888


Q ss_pred             HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCc
Q 043916           91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVR  136 (138)
Q Consensus        91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~  136 (138)
                      .++.+...+..+.++.+..|++++++..++.++..++|..+||.++
T Consensus       128 G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g  173 (438)
T PRK10133        128 AAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFG  173 (438)
T ss_pred             HHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999887777777789999999999999999765

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.18  E-value=1.8e-10  Score=89.38  Aligned_cols=120  Identities=18%  Similarity=0.084  Sum_probs=99.3

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916           11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK   90 (138)
Q Consensus        11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~   90 (138)
                      ...++|+|+.++|+..+.+.+...+.+. +.+++.||+|+|+.+..+.....+......+..+.     + .+...+.+.
T Consensus        34 i~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~-----~-~l~~~~~~~  106 (394)
T PRK11652         34 MARDLNVREGAVQAVMAAYLLTYGLSQL-FYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSL-----T-VLIAASAIQ  106 (394)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHH-hhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccH-----H-HHHHHHHHH
Confidence            3457899999999999999999999965 78999999999999999988888877766654332     2 234556677


Q ss_pred             HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      +++.+...+....+..+..+++++++.++..+....++..+||.++|
T Consensus       107 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~  153 (394)
T PRK11652        107 GLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGG  153 (394)
T ss_pred             HhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777878888889999999999999999999999999998765

>PRK03699 putative transporter; Provisional

Probab=99.18  E-value=2.9e-10  Score=88.56  Aligned_cols=119  Identities=16%  Similarity=0.128  Sum_probs=98.5

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916           12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN   91 (138)
Q Consensus        12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~   91 (138)
                      ...+|+|.+|.|+..+...+...+.+. +.+++.||+|+||++..+.....+..++..+.++.     + .+...+.+..
T Consensus        34 ~~~~~~s~~~~g~~~s~~~~~~~i~~~-~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~-----~-~~~~~~~l~G  106 (394)
T PRK03699         34 AEYFNLPVSSMSNTFTFLNAGILISIF-LNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSL-----A-LFSIAMFVLG  106 (394)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchH-----H-HHHHHHHHHH
Confidence            356899999999999999999999855 78999999999999999998888888777765432     2 2335566777


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      ++.+...+.....+.+..|+++||+.++..++..+++..++|.+.+
T Consensus       107 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  152 (394)
T PRK03699        107 VVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAA  152 (394)
T ss_pred             HhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7788888888899999999999999999998888888888887643

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.18  E-value=3.5e-10  Score=88.15  Aligned_cols=119  Identities=13%  Similarity=0.033  Sum_probs=99.1

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916           12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN   91 (138)
Q Consensus        12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~   91 (138)
                      ..++|.|+.++++..+.+.+...+.+. +.+++.||+|+||++..+...+.+..+..++..+.     | .+...+.+.+
T Consensus        40 ~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~-----~-~l~~~~~l~G  112 (406)
T PRK15402         40 VEDFNAGAEWVPTSMTAYLAGGMFLQW-LLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSI-----E-QFTLLRFLQG  112 (406)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccH-----H-HHHHHHHHHH
Confidence            357899999999999999999999855 77999999999999999998888887776655432     2 2335566777


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      ++.+...|.....+++..|+++|++.+|+.+....++..+||.+++
T Consensus       113 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~  158 (406)
T PRK15402        113 IGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGA  158 (406)
T ss_pred             hHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777888899999999999999999999998899999998754

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.17  E-value=3.2e-10  Score=88.86  Aligned_cols=120  Identities=16%  Similarity=0.094  Sum_probs=109.2

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916           11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK   90 (138)
Q Consensus        11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~   90 (138)
                      ...++|.|..+.|+..+.++....+. ..+...+.+|+.||+++...+.++..+-++..++.++      ..+...+++.
T Consensus        39 iA~dl~vs~~~aG~lis~yAl~~ai~-ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f------~~Ll~aR~~~  111 (394)
T COG2814          39 IAADLGVSEGAAGQLITAYALGVALG-APLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSF------AVLLLARALA  111 (394)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccH------HHHHHHHHHH
Confidence            45689999999999999999999999 7788999999999999999999999998888777653      3566888998


Q ss_pred             HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      .+..+..++...++..+.+|||+||++.|+..+..+++..+|.++|.
T Consensus       112 g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt  158 (394)
T COG2814         112 GLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGT  158 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHH
Confidence            99999999999999999999999999999999999999999998874

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.17  E-value=1.1e-10  Score=88.67  Aligned_cols=117  Identities=14%  Similarity=0.046  Sum_probs=95.0

Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 043916           10 RKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVM   89 (138)
Q Consensus        10 ~~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~   89 (138)
                      .....+|+|..|+|+..+.+.+...+.|. +.+++.||+|+|+++..+..+..++.+.+.+..+.     | .+...+.+
T Consensus        28 ~~~~~~~~s~~~~g~~~s~~~~~~~~~~~-~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~  100 (377)
T TIGR00890        28 PLGRYFGVGVTAVAIWFTLLLIGLAMSMP-VGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSL-----A-ALYLTYGL  100 (377)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHhh-hhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHH-----H-HHHHHHHH
Confidence            34457899999999999999999999965 77999999999999999999999988877766542     2 23345567


Q ss_pred             HHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccC
Q 043916           90 KNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPA  134 (138)
Q Consensus        90 ~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~  134 (138)
                      .+++.+..++.....+.+..| |+||+++|+.++...++-.+++.
T Consensus       101 ~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~  144 (377)
T TIGR00890       101 ASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSP  144 (377)
T ss_pred             HhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHH
Confidence            777888777777888888876 68999999999988888766443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.17  E-value=4.9e-10  Score=89.29  Aligned_cols=119  Identities=13%  Similarity=0.060  Sum_probs=101.3

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916           12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN   91 (138)
Q Consensus        12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~   91 (138)
                      ...+|+|..+.++..+...+...+.+ ++.+++.||+|+|+.+..+...+.+..+.+.+..+.     | .+...+.+.+
T Consensus        47 ~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-----~-~l~~~~~l~G  119 (496)
T PRK03893         47 QGEFGLTTVQAASLISAAFISRWFGG-LLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGY-----W-TLFIARLVIG  119 (496)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHH-----H-HHHHHHHHHH
Confidence            35689999999999999999999986 577999999999999999999888888777765432     2 2345667778


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      ++.+...+....++.+..|+|+||+.+|+..+..+++..++|.+++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  165 (496)
T PRK03893        120 MGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYS  165 (496)
T ss_pred             HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888999999999999999999999999999999999997654

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.17  E-value=6.3e-10  Score=84.24  Aligned_cols=117  Identities=18%  Similarity=0.095  Sum_probs=95.6

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 043916           15 LSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLS   94 (138)
Q Consensus        15 lg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~   94 (138)
                      +|+++.+.|+.....++...+.+. +.+++.||+++++....+.....+......+...  +  .|. ......+..++.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~-~~~~~~~~g~~~  315 (365)
T TIGR00900       242 LGRGSTHYGWVLAAFGLGALLGAL-LLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPP--N--FPL-FLVLWFAIGVGY  315 (365)
T ss_pred             hCCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhch--h--HHH-HHHHHHHHHHHH
Confidence            789999999999999999988854 6789999999999998887766666665554432  1  122 233455667788


Q ss_pred             HHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           95 VSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        95 ~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      +...|...+++.+.+|+|+||+++|+.++...++..+||.++|
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g  358 (365)
T TIGR00900       316 GPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAG  358 (365)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888999999999999999999999999999999999998876

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.16  E-value=5.7e-10  Score=87.05  Aligned_cols=116  Identities=13%  Similarity=0.059  Sum_probs=98.6

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 043916           17 YSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVS   96 (138)
Q Consensus        17 ~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~   96 (138)
                      .+..+.|++.+.+.+...+.+. +.+++.||+|+|+++..+..++.++.++..+.....+   +..+...+.+.+++.+.
T Consensus        68 ~~~~~~~~~~~~~~~~~~i~~~-~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~r~l~G~~~~~  143 (481)
T TIGR00879        68 YSSSLWGLVVSIFLVGGFIGAL-FAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALS---VEMLIVGRVLLGIGVGI  143 (481)
T ss_pred             CChhHHHHHHHHHHHHHHHHHH-HhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccc---hHHHHHHHHHHHhhhhH
Confidence            6699999999999999999955 7899999999999999999988888777754332211   11344677888888898


Q ss_pred             HHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCc
Q 043916           97 IITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVR  136 (138)
Q Consensus        97 ~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~  136 (138)
                      ..+....++.+..|+++||+++|+.+....+|..+||.++
T Consensus       144 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~  183 (481)
T TIGR00879       144 ASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG  183 (481)
T ss_pred             HHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999876

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00889 2A0110 nucleoside transporter

Probab=99.16  E-value=4.8e-10  Score=88.44  Aligned_cols=119  Identities=15%  Similarity=0.143  Sum_probs=94.0

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 043916           17 YSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVS   96 (138)
Q Consensus        17 ~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~   96 (138)
                      ++.++.|...+..++..++.|. ..+++.||+|+|+++..+.....+.+..+......  ...+..+.....+..++.+.
T Consensus       248 ~~~~~~g~~~~~~~i~~i~~~~-~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~--~~~~~~l~l~~~l~g~~~~~  324 (418)
T TIGR00889       248 FVVKNASIWMSLSQFSEIFFIL-TIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPE--YFGYALLFLSMIVYGCAFDF  324 (418)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcc--hhhHHHHHHHHHHHHHHHHH
Confidence            5568889999999999999964 77999999999999999999888876655542110  00112233455666777777


Q ss_pred             HHHHHHHHHhhcccchhhhhhhhHHH-HHHHHHhhHccCCcCC
Q 043916           97 IITRLFLLQNRAVEQHQRGAANGLVM-TVVSLTKTAGPAVRGA  138 (138)
Q Consensus        97 ~~p~~~~li~~~~p~~~~G~~~G~~~-s~~sl~r~igP~i~G~  138 (138)
                      ..|....++++.+|+++||+++|+.+ ...+++.++||.++|+
T Consensus       325 ~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~  367 (418)
T TIGR00889       325 FNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGV  367 (418)
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            88888999999999999999999997 5789999999998873

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.16  E-value=1.6e-10  Score=88.35  Aligned_cols=119  Identities=13%  Similarity=0.096  Sum_probs=88.2

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHH-HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916           12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITR-IAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK   90 (138)
Q Consensus        12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~   90 (138)
                      ..++|+|..++|++.+.+.+...+.|. +.+++.||+|+||.+. .+.........++++.++.     |. +.....+.
T Consensus        25 ~~~~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~-----~~-l~~~~~~~   97 (375)
T TIGR00899        25 SEEVRARPAMIGLFYTGSAIVGIAVSQ-LLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNY-----FL-LLVLGVLL   97 (375)
T ss_pred             HcccCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchH-----HH-HHHHHHHH
Confidence            345899999999999999999999976 5689999999988655 4555555555555554331     22 22334444


Q ss_pred             HHHHHHHHHHHHHHHhhcccchhhhhh--hhHHHHHHHHHhhHccCCcC
Q 043916           91 NVLSVSIITRLFLLQNRAVEQHQRGAA--NGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        91 ~~~~~~~~p~~~~li~~~~p~~~~G~~--~G~~~s~~sl~r~igP~i~G  137 (138)
                      ..+.+...|...++..+..|+++|++.  +|..++..+++..+||.++|
T Consensus        98 g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~  146 (375)
T TIGR00899        98 SSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAF  146 (375)
T ss_pred             HhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHH
Confidence            555566778888888888887777654  78889999999999998875

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.15  E-value=1.7e-10  Score=92.57  Aligned_cols=118  Identities=11%  Similarity=0.037  Sum_probs=99.8

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhh-hhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERI-IGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN   91 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~-~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~   91 (138)
                      +++|+|..+.|++.+.+.....+.+. +.+++.|| +|+||+...+..+..+++.++++..+.     + .+...+.+..
T Consensus        41 ~~lg~s~~~ag~~~~~~~~~~~~~~~-~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~-----~-~~~~~~~l~g  113 (475)
T TIGR00924        41 AGLGFSQEQAFIIFGAYSALVYLLTS-VGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYP-----D-LIFYGLGTIA  113 (475)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHh-hHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccH-----h-HHHHHHHHHH
Confidence            46999999999999999999999955 77999999 899999999999999998888765431     1 2334555667


Q ss_pred             HHHHHHHHHHHHHHhhcccchh---hhhhhhHHHHHHHHHhhHccCCcC
Q 043916           92 VLSVSIITRLFLLQNRAVEQHQ---RGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        92 ~~~~~~~p~~~~li~~~~p~~~---~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      ++.+...|...+++++..|+++   |+++.++......+|..+||.++|
T Consensus       114 ~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g  162 (475)
T TIGR00924       114 VGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAG  162 (475)
T ss_pred             hccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHH
Confidence            7888888999999999998754   899999999999999999998875

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.14  E-value=1e-09  Score=85.27  Aligned_cols=117  Identities=8%  Similarity=-0.034  Sum_probs=97.1

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916           14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL   93 (138)
Q Consensus        14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~   93 (138)
                      ++|.++.++|..++...+..++. ..+.+++.||+|+++++.++.....+.+.++++.++.     | .+.....+..+.
T Consensus       234 ~~g~s~~~~g~l~~~~~~~~i~~-~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~-----~-~~~~~q~l~g~~  306 (382)
T TIGR00902       234 AAGISASATGLLWGIGVLAEIII-FAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAF-----P-LIFLLQILHCGT  306 (382)
T ss_pred             HCCCCHhHHHHHHHHHHHHHHHH-HHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhH-----H-HHHHHHHHHHHH
Confidence            47999999999999766666655 7788999999999999999999999998888765442     2 233456788888


Q ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhHHHH-HHHHHhhHccCCcCC
Q 043916           94 SVSIITRLFLLQNRAVEQHQRGAANGLVMT-VVSLTKTAGPAVRGA  138 (138)
Q Consensus        94 ~~~~~p~~~~li~~~~p~~~~G~~~G~~~s-~~sl~r~igP~i~G~  138 (138)
                      .+...++...++++. |+++|++.+|+.++ ...++.++||.++|+
T Consensus       307 ~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~  351 (382)
T TIGR00902       307 FAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGF  351 (382)
T ss_pred             HHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999988 99999999999864 567999999998874

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.14  E-value=8.8e-10  Score=85.58  Aligned_cols=124  Identities=12%  Similarity=0.066  Sum_probs=88.3

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHH-HHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916           14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLT-SYTYIAMLSGFSLALFINCASVMKNV   92 (138)
Q Consensus        14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~l~~~~~~~~~   92 (138)
                      +.|++++++|++....+....+.+.++.+++.||+|++|....+......... .............+. +.....+...
T Consensus       237 ~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  315 (390)
T TIGR02718       237 DAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAV-AWSCSAFGSL  315 (390)
T ss_pred             hcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHH-HHHHHHHHHH
Confidence            47999999999999999888877788999999999999999887765522222 111111000000111 1122234445


Q ss_pred             HHHHHHHHHHHHHhhcccc-hhhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916           93 LSVSIITRLFLLQNRAVEQ-HQRGAANGLVMTVVSLTKTAGPAVRGA  138 (138)
Q Consensus        93 ~~~~~~p~~~~li~~~~p~-~~~G~~~G~~~s~~sl~r~igP~i~G~  138 (138)
                      ..+..++...+...+..++ +++|+.+++.++..++++.+||.++|+
T Consensus       316 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~  362 (390)
T TIGR02718       316 ITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGY  362 (390)
T ss_pred             HHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677777888888788776 899999999999999999999998873

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.13  E-value=1.1e-09  Score=89.07  Aligned_cols=122  Identities=18%  Similarity=0.115  Sum_probs=102.4

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 043916           15 LSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLS   94 (138)
Q Consensus        15 lg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~   94 (138)
                      +.-|+..+|++.+...+...++ ..+.+.+.||+++||+...+..+..+..+.++..........|. ++...++.+++.
T Consensus        40 lt~S~~~valv~~a~~LP~~Ll-sl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~-Ll~~~fl~g~~~  117 (524)
T PF05977_consen   40 LTGSPLMVALVQAASTLPILLL-SLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWL-LLILTFLLGIGS  117 (524)
T ss_pred             HhCCHHHHHHHHHHHHHHHHHH-HHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHH-HHHHHHHHHHHH
Confidence            4568999999999999999988 66889999999999999999988877666666554432222354 345567778899


Q ss_pred             HHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916           95 VSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRGA  138 (138)
Q Consensus        95 ~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G~  138 (138)
                      ++..|+.++++.+.+|+|+..++|++.+....++|.+||.+||.
T Consensus       118 a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~  161 (524)
T PF05977_consen  118 AFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGI  161 (524)
T ss_pred             HHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHH
Confidence            99999999999999999999999999999999999999999983

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.13  E-value=2.7e-10  Score=74.90  Aligned_cols=103  Identities=14%  Similarity=0.136  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043916           28 ISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITRLFLLQNR  107 (138)
Q Consensus        28 ~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~li~~  107 (138)
                      ..++...+. ....+++.||+|+|+.+..+.....+..+.+....+.     |. +.....+..++.+...|.....+.+
T Consensus         6 ~~~~~~~~~-~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~g~~~~~~~~~~~~~~~~   78 (141)
T TIGR00880         6 GYALGQLIY-SPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNI-----TV-LIIARFLQGFGAAFALVAGAALIAD   78 (141)
T ss_pred             eehhHHHHH-HhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccH-----HH-HHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            345556666 4477899999999999999888887777666544321     22 2244566677778888889999999


Q ss_pred             cccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916          108 AVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus       108 ~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      ..|+++|++.+|+.++...++..++|.++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  108 (141)
T TIGR00880        79 IYPPEERGVALGLMSAGIALGPLLGPPLGG  108 (141)
T ss_pred             HCChhhhhHHHHHHHHhHHHHHHHhHHhHH
Confidence            999999999999999999999999998876

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.13  E-value=1.4e-09  Score=84.50  Aligned_cols=118  Identities=19%  Similarity=0.165  Sum_probs=91.6

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916           14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL   93 (138)
Q Consensus        14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~   93 (138)
                      +.|+++.+.|...+..++...+.+. +.+++.||+|+++....+.......+...++.+..     +.. .....+...+
T Consensus       249 ~~g~s~~~~~~~~~~~~~~~~~~~~-~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~g~~  321 (406)
T PRK11551        249 GQGLSRSQAGLVQIAFNIGGALGSL-LIGALMDRLRPRRVVLLIYAGILASLAALAAAPSF-----AGM-LLAGFAAGLF  321 (406)
T ss_pred             hCCCChhhhhHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcH-----HHH-HHHHHHHHHH
Confidence            4689999999999999999998854 78999999999999888766666655555443321     221 1223334445


Q ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916           94 SVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRGA  138 (138)
Q Consensus        94 ~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G~  138 (138)
                      .....+...+++.+.+|+++||+.+|+.++...++..+||.++|+
T Consensus       322 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~  366 (406)
T PRK11551        322 VVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQ  366 (406)
T ss_pred             HHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhh
Confidence            555667888999999999999999999999999999999999874

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.12  E-value=1.1e-09  Score=82.25  Aligned_cols=116  Identities=22%  Similarity=0.239  Sum_probs=99.4

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHH-HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916           15 LSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPII-ITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL   93 (138)
Q Consensus        15 lg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~   93 (138)
                      +|.+..+.++..+..++...+.+ .+.+++.||+++|+ .+..+.....+....++..++.     + .+.....+...+
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~-~~~~~~~~~g~~  278 (352)
T cd06174         206 LGLSAAEAGLLLSLFGLGGILGA-LLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSL-----A-LLLVALLLLGFG  278 (352)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccH-----H-HHHHHHHHHHHH
Confidence            58899999999999999999995 47788999999999 9999999888888877765431     2 233455677788


Q ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           94 SVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        94 ~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      .+...|...+++++..|+|+||+.+|+.+....++..++|.+.|
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g  322 (352)
T cd06174         279 LGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAG  322 (352)
T ss_pred             HhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88889999999999999999999999999999999999998765

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11043 putative transporter; Provisional

Probab=99.12  E-value=8.8e-10  Score=85.70  Aligned_cols=119  Identities=14%  Similarity=0.061  Sum_probs=98.0

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916           12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN   91 (138)
Q Consensus        12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~   91 (138)
                      ...+|.|+.++|+..+...+...+.+. +.+++.||+|+|+++..+..+..+......+..+.     | .+...+.+.+
T Consensus        33 ~~~~~~s~~~~g~~~s~~~~~~~~~~~-~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-----~-~l~~~~~l~G  105 (401)
T PRK11043         33 QADLQTSASAVSASLSLFLAGFALGQL-LWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESA-----A-QLLVLRFVQA  105 (401)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHHH-hhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCH-----H-HHHHHHHHHH
Confidence            356899999999999999999999965 77999999999999999998888777766654432     2 2334556667


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      ++.+...+...+++.+..|++++++.++..++...++..+||.++|
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~  151 (401)
T PRK11043        106 VGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGA  151 (401)
T ss_pred             hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7766677777889999999999999999999999999999998765

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.10  E-value=1.4e-09  Score=91.63  Aligned_cols=117  Identities=10%  Similarity=0.057  Sum_probs=100.3

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV   92 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~   92 (138)
                      ..+|++..+.|++.+...+..++.+ ++.+++.||+|+|+++.++..++.++.++.++.+..     + .+.+.+++.++
T Consensus       195 ~~~gls~~~~g~l~s~~~lG~iiG~-li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~-----~-~llv~R~l~G~  267 (742)
T TIGR01299       195 KDLCIPDSGKGMLGLIVYLGMMVGA-FFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGY-----G-FFLFCRLLSGF  267 (742)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhH-----H-HHHHHHHHHHH
Confidence            4578999999999999999999985 488999999999999999999888887777665432     2 34456778888


Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCc
Q 043916           93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVR  136 (138)
Q Consensus        93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~  136 (138)
                      +.+...|...+++++.+|+++||+..|+.+...++|.+++|.++
T Consensus       268 g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la  311 (742)
T TIGR01299       268 GIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMA  311 (742)
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888999999999999999999999999999999999888643

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.10  E-value=2.5e-10  Score=89.40  Aligned_cols=122  Identities=17%  Similarity=0.115  Sum_probs=97.1

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916           14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL   93 (138)
Q Consensus        14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~   93 (138)
                      .++.++.|.|++.+...+...+.+. +.+++.||+|+|++...+..+..+.+..++..........| .+...+.+..++
T Consensus        46 ~~~~s~~~~g~~~~~~~l~~~~~~~-~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~  123 (417)
T PRK10489         46 MMTGSTLQVGLSVTLTGGAMFIGLM-VGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLL-AIYLLGLWDGFF  123 (417)
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHHHH-hhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHH
Confidence            3567999999999999999999965 77999999999999988888777766655432211111112 233456677778


Q ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           94 SVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        94 ~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      .+...|+..+++.+..|+|+|++++|+.+...+++..+||.++|
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g  167 (417)
T PRK10489        124 GSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGG  167 (417)
T ss_pred             HHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHH
Confidence            88888889999999999999999999999999999999999876

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.09  E-value=4.4e-10  Score=88.82  Aligned_cols=119  Identities=11%  Similarity=0.060  Sum_probs=95.4

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 043916           15 LSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLS   94 (138)
Q Consensus        15 lg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~   94 (138)
                      +|.|+.|+|+..+.+.+...+.+. +.+++.||+|+|+.+..+..+..+....+.........  ...+...+.+..++.
T Consensus        56 ~g~s~~~~g~~~~~~~~~~~~~~~-~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~l~g~~~  132 (438)
T TIGR00712        56 QGFSKGELGFALSAISIAYGFSKF-IMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSS--IAIMFVLLFLNGWFQ  132 (438)
T ss_pred             cCCCHhHhHHHHHHHHHHHHHhhh-ccchhhhccCCceehHHHHHHHHHHHHHHhccccccch--HHHHHHHHHHHHHHh
Confidence            589999999999999999999855 77999999999999999988888887766554321111  112334455667777


Q ss_pred             HHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCc
Q 043916           95 VSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVR  136 (138)
Q Consensus        95 ~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~  136 (138)
                      +..+|.....+.+..|+++||+++|+.++...++..++|.+.
T Consensus       133 g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~  174 (438)
T TIGR00712       133 GMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLV  174 (438)
T ss_pred             hcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHH
Confidence            777888888999999999999999999999999999888653

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.09  E-value=1.6e-09  Score=85.42  Aligned_cols=118  Identities=8%  Similarity=-0.041  Sum_probs=89.7

Q ss_pred             CCChhHHHHHHHHHHHHHH---HHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhh--hHHHHHHHHHHHHHH
Q 043916           16 SYSTKNVGQVLAISGFNLL---FSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLS--GFSLALFINCASVMK   90 (138)
Q Consensus        16 g~s~~~ig~~~~~~g~~~~---~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~l~~~~~~~   90 (138)
                      +.+..+.+......+....   +.+ ++.+++.||+|+||.+..+...+.+..++..+.++..  +......+...+.++
T Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~ig~-~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~  134 (432)
T PRK10406         56 GNTTTQLLQTAGVFAAGFLMRPIGG-WLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQ  134 (432)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHH
Confidence            4556655555554444444   664 4789999999999999999999999888876654321  011123456788899


Q ss_pred             HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccC
Q 043916           91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPA  134 (138)
Q Consensus        91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~  134 (138)
                      +++.+..+|...+++++..|+++||+..++.+.....|..+++.
T Consensus       135 G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~  178 (432)
T PRK10406        135 GLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALL  178 (432)
T ss_pred             HhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999988887777777664

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.09  E-value=2e-09  Score=84.32  Aligned_cols=116  Identities=13%  Similarity=-0.011  Sum_probs=90.6

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 043916           17 YSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVS   96 (138)
Q Consensus        17 ~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~   96 (138)
                      .++.++|++++..+......+....++..||++.++....+..+..+.+.++++.+..     +. +.....+...+...
T Consensus       240 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~-~~~~~~l~~~g~~~  313 (400)
T PRK11646        240 GSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNL-----QQ-LFTLICLFYIGSII  313 (400)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhH-----HH-HHHHHHHHHHHHHH
Confidence            3788999999999888887777777777788887777777777777766655544321     21 12233445667778


Q ss_pred             HHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916           97 IITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRGA  138 (138)
Q Consensus        97 ~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G~  138 (138)
                      ..|...+++.+.+|+++||+++|+.+....++..+||.++|+
T Consensus       314 ~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~  355 (400)
T PRK11646        314 AEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGW  355 (400)
T ss_pred             HHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHH
Confidence            889999999999999999999999999999999999999873

>TIGR00898 2A0119 cation transport protein

Probab=99.08  E-value=6.9e-10  Score=88.75  Aligned_cols=120  Identities=11%  Similarity=0.064  Sum_probs=102.1

Q ss_pred             CCCCCCCC---hhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 043916           11 KYGGLSYS---TKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCAS   87 (138)
Q Consensus        11 ~~gglg~s---~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~   87 (138)
                      ...++|++   +.+.|+..+.+.+...+.+ ++.+++.||+|+|+++..+..+..+..++..+..+.     | .+...+
T Consensus       115 i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~-~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~-----~-~~~~~r  187 (505)
T TIGR00898       115 IVTEWDLVCEDAWKVDLTQSCFFVGVLLGS-FVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNY-----T-VFLVFR  187 (505)
T ss_pred             EEEEecceechHHHHHHHHHHHHHHHHHHH-HhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccH-----H-HHHHHH
Confidence            44578888   8999999999999999995 478999999999999999999888887776655432     2 344667


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           88 VMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        88 ~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      .+.+++.+...|...+++++.+|+++|+++.++.+...++|..++|.+++
T Consensus       188 ~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  237 (505)
T TIGR00898       188 LLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAY  237 (505)
T ss_pred             HHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78888888889999999999999999999999999999999999987653

>TIGR00901 2A0125 AmpG-related permease

Probab=99.08  E-value=4.7e-09  Score=80.33  Aligned_cols=111  Identities=8%  Similarity=0.075  Sum_probs=86.4

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhh------HHHHHHHHHHHH
Q 043916           15 LSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSG------FSLALFINCASV   88 (138)
Q Consensus        15 lg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~------~~~~~~l~~~~~   88 (138)
                      +|++++++|.+....+....+.+.++.+++.||+|+|+.+..+..+..+....+.+......      ...| .+.....
T Consensus       239 ~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  317 (356)
T TIGR00901       239 MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLL-MLFLTIT  317 (356)
T ss_pred             cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHH-HHHHHHH
Confidence            78999999999999997777777889999999999999988888877766654443311000      0112 2334455


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHH
Q 043916           89 MKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVS  126 (138)
Q Consensus        89 ~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~s  126 (138)
                      +..++.+...+...+++++.+|+|+||+.+|+.++..+
T Consensus       318 l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       318 LEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            66788889999999999999999999999999998765

>TIGR00895 2A0115 benzoate transport

Probab=99.08  E-value=4.1e-09  Score=80.69  Aligned_cols=119  Identities=13%  Similarity=0.136  Sum_probs=88.6

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV   92 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~   92 (138)
                      ..+|+++.+.++..+..++...+. ..+.+++.||+++++............+.+.....   +  .+. ......+..+
T Consensus       278 ~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~-~~~~~~~~g~  350 (398)
T TIGR00895       278 VELGFSLSLAATGGALFNFGGVIG-SIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLF---S--PTL-LLLLGAIAGF  350 (398)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhh---C--HHH-HHHHHHHHHH
Confidence            457899999999999999999888 55889999999988554444433333322222111   1  121 1233445566


Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916           93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRGA  138 (138)
Q Consensus        93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G~  138 (138)
                      +.+...|...+++.+..|+++||+++|+.++...++..+||.++|+
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~  396 (398)
T TIGR00895       351 FVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGY  396 (398)
T ss_pred             HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence            7777888999999999999999999999999999999999999874

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.08  E-value=9e-10  Score=86.22  Aligned_cols=117  Identities=14%  Similarity=0.144  Sum_probs=91.2

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 043916           15 LSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLS   94 (138)
Q Consensus        15 lg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~   94 (138)
                      +|.++.+.|++.+..++...+.+. +.+++.||.++++....+.....+.++++.+..+.     + .+.....+.+.+.
T Consensus       254 ~g~~~~~~g~~~~~~~~g~~ig~~-~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~g~~~  326 (417)
T PRK10489        254 WQMGAAQIGLLYAAVPLGAALGAL-TSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMW-----I-LAVLCLALFGYLS  326 (417)
T ss_pred             cCCChhHhHHHHHHHHHHHHHHHH-HHHHhhhccCcchHHHHHHHHHHHHHHHHHccchH-----H-HHHHHHHHHHHHH
Confidence            789999999999999999888854 67899999888888888777776666655443221     2 2223344555666


Q ss_pred             HHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916           95 VSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRGA  138 (138)
Q Consensus        95 ~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G~  138 (138)
                      +...+...+++.+.+|+|+||+++|+..+...++..+||.+.|+
T Consensus       327 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~  370 (417)
T PRK10489        327 AISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGG  370 (417)
T ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHH
Confidence            66667778899999999999999999999999999999988763

>TIGR00896 CynX cyanate transporter

Probab=99.07  E-value=9.1e-10  Score=84.33  Aligned_cols=118  Identities=16%  Similarity=0.061  Sum_probs=93.3

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916           11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK   90 (138)
Q Consensus        11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~   90 (138)
                      ...++|+|.+|.|+..+.+.+...+.+. +.+++.||+|+||.+..+......+.... ..++     .+ .+...+.+.
T Consensus        26 l~~~~~~s~~~~g~~~s~~~~~~~~~~~-~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~-----~~-~l~~~~~~~   97 (355)
T TIGR00896        26 IRSALGMSFSVAGLLTALPVLCFAVLAP-LAPWLARRFGEERSVAAGLLLIAAGILIR-SAPG-----TA-LLFAGTALI   97 (355)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHH-hHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hhcc-----HH-HHHHHHHHH
Confidence            3567999999999999999999999954 78999999999999999888777666544 2221     12 233556677


Q ss_pred             HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      .++.+...+....++.+..| ++||+++|+.+....++..++|.+++
T Consensus        98 g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~  143 (355)
T TIGR00896        98 GVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATV  143 (355)
T ss_pred             HHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777778888875 68999999999999999988886643

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.07  E-value=6.5e-10  Score=85.51  Aligned_cols=119  Identities=14%  Similarity=0.174  Sum_probs=86.9

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV   92 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~   92 (138)
                      ..+|+++.+.+++.+..++...+. .++.+++.||+|+|+.+..+.....+.........  ..  .+. +.....+...
T Consensus       267 ~~~g~s~~~~~~~~~~~~~~~~~g-~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~-~~~~~~~~~~  340 (405)
T TIGR00891       267 ADLGLSPHTVANIVVFSNIGAIVG-GCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIG--AN--VAV-LGLGLFFQQM  340 (405)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhC--Cc--hHH-HHHHHHHHHH
Confidence            347899999999999999999888 45789999999999998887765533222111111  11  121 1222233344


Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      ......+....++++.+|+|+||+++|+.++...++..+||.++|
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g  385 (405)
T TIGR00891       341 LVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGA  385 (405)
T ss_pred             HHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHH
Confidence            444455667788999999999999999999999999999999876

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.05  E-value=1.2e-09  Score=86.67  Aligned_cols=119  Identities=9%  Similarity=0.004  Sum_probs=94.1

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916           12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN   91 (138)
Q Consensus        12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~   91 (138)
                      ... |+|+.++|+..+...+...+.|. +.+++.||+|+|+++..+..++.+....+.+.......  +..+...+.+.+
T Consensus        56 ~~~-g~s~~~~g~~~~~~~i~~~~~~~-~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~l~g  131 (452)
T PRK11273         56 VEQ-GFSRGDLGFALSGISIAYGFSKF-IMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS--IAVMFVLLFLCG  131 (452)
T ss_pred             HHc-CCCHHHHHHHHHHHHHHHHHHHh-hhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhccccc--HHHHHHHHHHHH
Confidence            344 89999999999999999999966 77999999999999999999988888777665321111  122334556667


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhh-HccC
Q 043916           92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKT-AGPA  134 (138)
Q Consensus        92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~-igP~  134 (138)
                      ++.+...|.....+.+..|+|+||+.+|+.+....++.. .+|+
T Consensus       132 i~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l  175 (452)
T PRK11273        132 WFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLL  175 (452)
T ss_pred             HHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            778878888888888999999999999999988888864 4554

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.05  E-value=1.5e-09  Score=82.44  Aligned_cols=120  Identities=15%  Similarity=0.057  Sum_probs=91.5

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV   92 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~   92 (138)
                      .++|++.++.+...+..++...+.+. +.+++.||+|+|+....+.....+...++++.....   .+. +.....+...
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~g~  307 (377)
T TIGR00890       233 QSLGLSDGFLVLAVSISSIFNGGGRP-FLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLN---DVL-FLATVALVFF  307 (377)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccch---hHH-HHHHHHHHHH
Confidence            34778899999999999999998854 779999999999999998888888777666543221   111 1112223344


Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      +.+...+....++++..|+|+||+.+|+.+....++..+||.+.|
T Consensus       308 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g  352 (377)
T TIGR00890       308 TWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIAS  352 (377)
T ss_pred             HhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHH
Confidence            444455666778899999999999999999999999999998765

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.05  E-value=4.1e-09  Score=84.75  Aligned_cols=121  Identities=13%  Similarity=0.045  Sum_probs=98.2

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 043916           15 LSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLS   94 (138)
Q Consensus        15 lg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~   94 (138)
                      .+.+..+.+++.+...+...+.+. +.+++.||+|+|+++..+..++.+..++..+............+...+.+.+++.
T Consensus        51 ~~~~~~~~~~~~~~~~ig~~ig~~-~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~  129 (502)
T TIGR00887        51 GPLPSSVSAAVNGSASIGTLAGQL-FFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGI  129 (502)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHH
Confidence            456788899999999999999955 7899999999999999998888887776665432110001223557788888999


Q ss_pred             HHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCc
Q 043916           95 VSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVR  136 (138)
Q Consensus        95 ~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~  136 (138)
                      +...|....++++.+|+++||+..++.+....+|..+||.++
T Consensus       130 g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~  171 (502)
T TIGR00887       130 GGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVA  171 (502)
T ss_pred             hhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988887654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.05  E-value=3.4e-09  Score=84.92  Aligned_cols=117  Identities=13%  Similarity=0.091  Sum_probs=89.9

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916           11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK   90 (138)
Q Consensus        11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~   90 (138)
                      ...++|+|..|+|++.+.+.+...+.|. +.+++.||+|+|++...+...+.+..++.++.++.     + .+...+++.
T Consensus        62 l~~~~gls~~~~g~~~~~~~~~~~~~~~-~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~-----~-~l~~~r~l~  134 (476)
T PLN00028         62 IRDNLNLTKSDIGNAGIASVSGSIFSRL-AMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSA-----T-GFIAVRFFI  134 (476)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCH-----H-HHHHHHHHH
Confidence            3457899999999998888888888865 77999999999999999999888888877765542     2 233445565


Q ss_pred             HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCC
Q 043916           91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAV  135 (138)
Q Consensus        91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i  135 (138)
                      +++.+... ....++++..|+++||+++|+.++...++..+++.+
T Consensus       135 G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~  178 (476)
T PLN00028        135 GFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLL  178 (476)
T ss_pred             HHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHH
Confidence            66665443 356678999999999999999987777776666543

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.04  E-value=1.1e-09  Score=87.16  Aligned_cols=119  Identities=10%  Similarity=0.004  Sum_probs=94.1

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916           12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN   91 (138)
Q Consensus        12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~   91 (138)
                      ...+|+|.+++++..+.+.+...+.+. +.+++.||+|+|+++..+..++.+..++..+.++.     |......+.+.+
T Consensus        46 ~~~~g~s~~~~~~~~s~~~~~~~~~~~-~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~l~G  119 (455)
T TIGR00892        46 QQIFQATYSETAWISSIMLAVLYAGGP-ISSILVNRFGCRPVVIAGGLLASLGMILASFSSNV-----IELYLTAGFITG  119 (455)
T ss_pred             HHHhCcchhHHHHHHHHHHHHHHHhhH-HHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHH
Confidence            457899999999999998888887744 67999999999999999998888887777665432     222222335556


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      ++.+...+....++.+..| ++||+++|+.++...++..++|.++|
T Consensus       120 ~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~  164 (455)
T TIGR00892       120 LGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQ  164 (455)
T ss_pred             hcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHH
Confidence            6666666667788888885 79999999999999999999988765

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.03  E-value=3.9e-09  Score=81.81  Aligned_cols=116  Identities=14%  Similarity=0.068  Sum_probs=90.7

Q ss_pred             CCCCChhH-----HHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 043916           14 GLSYSTKN-----VGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASV   88 (138)
Q Consensus        14 glg~s~~~-----ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~   88 (138)
                      .+|++..+     +|++++...+...+.+. +.+++.||+|+|+.+..+.........++.+.++.     |. +...+.
T Consensus        43 ~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~  115 (408)
T PRK09874         43 QLGVTGHSALNMWSGLVFSITFLFSAIASP-FWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNI-----WQ-FLILRA  115 (408)
T ss_pred             HhCCccchhHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhH-----HH-HHHHHH
Confidence            46676554     58999999999999855 67999999999999999998888877766654331     22 234455


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           89 MKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        89 ~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      +.+++.+ ..|....++.+..|+|+||+++|+.+....++..+||.++|
T Consensus       116 ~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  163 (408)
T PRK09874        116 LLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGG  163 (408)
T ss_pred             HHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            5565544 45778888899999999999999999999999999998765

>PRK15075 citrate-proton symporter; Provisional

Probab=99.02  E-value=2e-09  Score=85.02  Aligned_cols=125  Identities=5%  Similarity=-0.012  Sum_probs=91.7

Q ss_pred             CCCCCCChhHHHHHHH-H--HHHHH---HHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH--HHH
Q 043916           12 YGGLSYSTKNVGQVLA-I--SGFNL---LFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLA--LFI   83 (138)
Q Consensus        12 ~gglg~s~~~ig~~~~-~--~g~~~---~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~--~~l   83 (138)
                      ..+++.+..|.+.... .  .+...   .+.|. +.+++.||+|+||.+..+..++.+..+++.+.++......+  ..+
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~-~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l  120 (434)
T PRK15075         42 AKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAI-VLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLV  120 (434)
T ss_pred             HHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHH-HHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            3467888877665432 2  12212   23434 56999999999999999999999999888877653211001  124


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           84 NCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        84 ~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      ...+++.+++.+...|....++++.+|+|+||+.+|+.+...+++..+||.+++
T Consensus       121 ~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~  174 (434)
T PRK15075        121 LLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGY  174 (434)
T ss_pred             HHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            567788888888888988999999999999999999999888888777776543

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.98  E-value=2e-09  Score=86.81  Aligned_cols=119  Identities=9%  Similarity=-0.042  Sum_probs=98.5

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhh-hhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERI-IGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN   91 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~-~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~   91 (138)
                      .++|++.++.+++.+.+.....+. ..+.+++.|| +|+||++..+..++.++...+.+....     +..+...+.+..
T Consensus        43 ~~lg~~~~~a~~i~~~~~~~~~~~-~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~-----~~ll~~~~~l~~  116 (489)
T PRK10207         43 KQLGFSQEQAFITFGAFAALVYGL-ISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLK-----PDLIFIALGTIA  116 (489)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHH-HhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccc-----hhHHHHHHHHHH
Confidence            358999999999999988877777 4488999999 999999999999999998877665331     122335667778


Q ss_pred             HHHHHHHHHHHHHHhhcccch--hhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           92 VLSVSIITRLFLLQNRAVEQH--QRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        92 ~~~~~~~p~~~~li~~~~p~~--~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      ++.+...|...+++.+..|+|  +|++..++......+|..+||.++|
T Consensus       117 ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g  164 (489)
T PRK10207        117 VGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAP  164 (489)
T ss_pred             hccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHH
Confidence            888989999999999999876  5588899999999999999998776

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.98  E-value=4.4e-09  Score=83.29  Aligned_cols=121  Identities=13%  Similarity=0.106  Sum_probs=94.2

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916           14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL   93 (138)
Q Consensus        14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~   93 (138)
                      .+|+++.+.|+.....++...+. ..+.+++.||+|+|+....+..+.......+.+... ++...+. +.....+.+++
T Consensus       285 ~~g~s~~~~g~~~~~~~~~~~~~-~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~l~g~g  361 (485)
T TIGR00711       285 VLGYTALQAGLHILPVGLAPMLS-SPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFT-PDTPFLA-IALPQFIRGFG  361 (485)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCC-CCCCHHH-HHHHHHHHHHH
Confidence            47999999999999999999888 457799999999999999888877777665542111 1111121 22345567778


Q ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           94 SVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        94 ~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      .+..++.......+..|+|++|+++|+.+....++.++||.+.|
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g  405 (485)
T TIGR00711       362 MGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALIT  405 (485)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            88887777788888899999999999999999999999998765

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.98  E-value=5.9e-09  Score=78.69  Aligned_cols=118  Identities=23%  Similarity=0.171  Sum_probs=93.0

Q ss_pred             CCCCCCC-hhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916           12 YGGLSYS-TKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK   90 (138)
Q Consensus        12 ~gglg~s-~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~   90 (138)
                      ...+|++ ..+.++..+..++...+. ..+.+++.||+++++..........+..+.+.+..... ...|..  ....+.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~  309 (352)
T PF07690_consen  234 QEVLGFSGPSQAGLLFSIFGIVGIIG-SLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSS-SPVWLI--IALFLI  309 (352)
T ss_dssp             CHHHHCCTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHC-HHHHHH--HHHHHH
T ss_pred             hhccCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHH--HHHHHH
Confidence            3457888 899999999999999998 55789999999988877777777766666555444321 111221  234455


Q ss_pred             HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHcc
Q 043916           91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGP  133 (138)
Q Consensus        91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP  133 (138)
                      +++.+...|....++.+.+|+|+||+++|+.++..+++..+||
T Consensus       310 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  310 GFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            6788888999999999999999999999999999999999998

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.97  E-value=3.9e-10  Score=88.59  Aligned_cols=119  Identities=11%  Similarity=0.041  Sum_probs=106.1

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916           11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK   90 (138)
Q Consensus        11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~   90 (138)
                      .....++|..|+|++.+.+.+.+-+.+. +.+.+.||.++|+...+++.+.++..+++.+.+.+      ..+....++.
T Consensus        55 l~e~~~lsk~~lG~i~s~f~i~YG~sKf-~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~------~~~~~l~~ln  127 (448)
T COG2271          55 LIEDGGLSKTQLGILGSAFSITYGVSKF-VMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSL------FLFAVLWVLN  127 (448)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHH-HhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHH------HHHHHHHHHH
Confidence            3345679999999999999999999976 78999999999999999999999999999887643      2345677788


Q ss_pred             HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCc
Q 043916           91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVR  136 (138)
Q Consensus        91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~  136 (138)
                      +...++.+|.+...+.++.|++|||+..+++++.-.+|-++.|++.
T Consensus       128 g~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~  173 (448)
T COG2271         128 GWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVA  173 (448)
T ss_pred             HHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHH
Confidence            9999999999999999999999999999999999999999888765

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.97  E-value=4.1e-09  Score=91.58  Aligned_cols=116  Identities=14%  Similarity=0.073  Sum_probs=93.9

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 043916           18 STKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSI   97 (138)
Q Consensus        18 s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~   97 (138)
                      +....+++.+.+.+...+.+. +.+++.||+|+|+++.++..+..+..++..+......  .| .+.+.+++.+++.+..
T Consensus        45 ~~~~~~~~~~~~~l~~~l~~~-~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~--~~-~l~~~r~l~G~~~~~~  120 (1146)
T PRK08633         45 QVILTAIVNALFLLPFLLLSS-PAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGW--FW-LAFAVTFLLGAQSAIY  120 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh-hHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHcc--HH-HHHHHHHHHHHHHHhh
Confidence            345578888898888888855 7799999999999999988776666655544322111  12 3446777888899999


Q ss_pred             HHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           98 ITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        98 ~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      .|+..+++.+.+|+++||+++|+.++..+++..+||.++|
T Consensus       121 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~  160 (1146)
T PRK08633        121 SPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFS  160 (1146)
T ss_pred             chHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999876

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.97  E-value=5.3e-09  Score=81.49  Aligned_cols=119  Identities=13%  Similarity=0.095  Sum_probs=82.8

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHH-HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916           12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIIT-RIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK   90 (138)
Q Consensus        12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~   90 (138)
                      ...+|+|+.++|+..+...+.....+.+..++ .||+|+||.+ ..+.....+...++++....     |..+.....+ 
T Consensus        43 ~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~-  115 (393)
T PRK15011         43 TDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNY-----FVLLFVGVFL-  115 (393)
T ss_pred             HhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHH-----HHHHHHHHHH-
Confidence            44689999999999888877777666666666 9999999864 55556555665555554321     2222222222 


Q ss_pred             HHHHHHHHHHHHHHHhhcccchhh--hhhhhHHHHHHHHHhhHccCCcC
Q 043916           91 NVLSVSIITRLFLLQNRAVEQHQR--GAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        91 ~~~~~~~~p~~~~li~~~~p~~~~--G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      ........|....++.+..|+++|  +..+|..+...+++..+||+++|
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~  164 (393)
T PRK15011        116 SSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAY  164 (393)
T ss_pred             HHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            334455678888888887776544  56678999999999999999875

>TIGR00901 2A0125 AmpG-related permease

Probab=98.96  E-value=1.1e-08  Score=78.30  Aligned_cols=120  Identities=13%  Similarity=0.127  Sum_probs=87.0

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhh-----hhHHHH-HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Q 043916           12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERII-----GPIIIT-RIAGVLSITLLTSYTYIAMLSGFSLALFINC   85 (138)
Q Consensus        12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~-----g~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~   85 (138)
                      ..++|+|.+|+|+.... ++...+ +. +.+++.||+     |+||.+ ..+.....+.+..+.+.....  ..|... .
T Consensus        15 ~~~~g~s~~~~g~~~~~-~~~~~~-~~-~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~--~l~~l~-~   88 (356)
T TIGR00901        15 LRSKNVSLKTIGFFSLV-GLPYSL-KF-LWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPST--DLPLLA-G   88 (356)
T ss_pred             HHHcCCCHHHHHHHHHH-HHHHHH-HH-HHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcch--hHHHHH-H
Confidence            34689999999999655 555554 44 778889997     888865 556666666655555442211  123222 2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           86 ASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        86 ~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      ...+...+.+...|+..+++.+.+|+|+||+++|+.+...++|..++|.+++
T Consensus        89 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~  140 (356)
T TIGR00901        89 LAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLAL  140 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence            3334456777778999999999999999999999999999999999998764

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.96  E-value=1.6e-09  Score=86.39  Aligned_cols=120  Identities=19%  Similarity=0.201  Sum_probs=86.0

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV   92 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~   92 (138)
                      ..+|+++.++|++.+..++...+.+. +.+++.||+|+++.+..+..+..+..+.......  . ..+. +.....+...
T Consensus       304 ~~~g~~~~~~g~~~~~~~~~~~~g~~-~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~-~~~~~~~~~~  378 (496)
T PRK03893        304 TDLGYDPHTVANVLFFSGFGAAVGCC-VGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGG--A-NVWV-LGLLLFFQQM  378 (496)
T ss_pred             hhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc--c-HHHH-HHHHHHHHHH
Confidence            46899999999999999999999854 8899999999999988877655544432222111  1 1121 1122222222


Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      ......+....++.+..|+|+||+.+|+.++...++..+||.++|
T Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g  423 (496)
T PRK03893        379 LGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGA  423 (496)
T ss_pred             HhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHH
Confidence            222234556678889999999999999999999999999998876

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.96  E-value=6.3e-09  Score=79.41  Aligned_cols=119  Identities=8%  Similarity=-0.046  Sum_probs=90.5

Q ss_pred             CChhHHHHHHHHHHHHH-----HHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhH--HHHHHHHHHHHH
Q 043916           17 YSTKNVGQVLAISGFNL-----LFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGF--SLALFINCASVM   89 (138)
Q Consensus        17 ~s~~~ig~~~~~~g~~~-----~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~~~l~~~~~~   89 (138)
                      .+.++++...+......     .+. .++.+++.||+|+||++..+..+..+...+.++..+....  +....+...+.+
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l  105 (394)
T TIGR00883        27 SGDPLVALLATFATFAAGFLARPLG-AIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLI  105 (394)
T ss_pred             CCChHHHHHHHHHHHHHHHHHhhhH-HHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHH
Confidence            45677776665432222     233 3577999999999999999999999988888876654311  111234566778


Q ss_pred             HHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCc
Q 043916           90 KNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVR  136 (138)
Q Consensus        90 ~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~  136 (138)
                      .+++.+...|....++.+..|+|+||+.+++.+....+|..++|.++
T Consensus       106 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~  152 (394)
T TIGR00883       106 QGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTV  152 (394)
T ss_pred             HHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888999999999999999999999999999999988753

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.95  E-value=4.9e-09  Score=85.33  Aligned_cols=118  Identities=18%  Similarity=0.125  Sum_probs=98.5

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV   92 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~   92 (138)
                      ..+|.++..+|++++..|+..++. .++.+++.+|++..+++..+...++..++.+.+..+.     |.. ...+++.+.
T Consensus       247 ~~l~~~a~~yGll~a~~gvGai~G-al~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~-----~~~-~~~l~l~G~  319 (524)
T PF05977_consen  247 DVLGGGASGYGLLLAAFGVGAILG-ALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSF-----WLA-LIALFLAGA  319 (524)
T ss_pred             HHhCCcHHHHHHHHHHHHHHHHHH-HHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHH-----HHH-HHHHHHHHH
Confidence            358999999999999999999998 6688999999999999999998888887777665442     332 234455566


Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      +.........+.+-+.+|++.||+++++.++....+..+|..++|
T Consensus       320 ~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G  364 (524)
T PF05977_consen  320 AWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWG  364 (524)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            667777788899999999999999999999999999999988776

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK10504 putative transporter; Provisional

Probab=98.95  E-value=1.3e-08  Score=80.76  Aligned_cols=120  Identities=13%  Similarity=0.165  Sum_probs=94.6

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916           14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL   93 (138)
Q Consensus        14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~   93 (138)
                      .+|.++.+.|+.+....+...+. ..+.+++.||+|+|+++..+.....+...++.+.....  ..+. +....++.+++
T Consensus       291 ~~g~~~~~~g~~~~~~~~~~~~~-~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~g~~  366 (471)
T PRK10504        291 GLGFSPFHAGLMMIPMVLGSMGM-KRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLG--WYYL-LPFVLFLQGMV  366 (471)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccc--cHHH-HHHHHHHHHHH
Confidence            57899999999999888888777 45779999999999999988887777666555432111  1121 12334555677


Q ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           94 SVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        94 ~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      .+..++..+.++.+.+|+|++|+.+|+.+....++.++||.++|
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g  410 (471)
T PRK10504        367 NSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAG  410 (471)
T ss_pred             HHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence            78888888999999999999999999999999999999998876

>PRK12382 putative transporter; Provisional

Probab=98.94  E-value=7.4e-09  Score=80.30  Aligned_cols=110  Identities=13%  Similarity=0.118  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043916           21 NVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITR  100 (138)
Q Consensus        21 ~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~  100 (138)
                      +.++.....++..++.+. ..+++.||+|++|....+..+..+.+.++++..+.     +. ......+...+.+...|.
T Consensus       250 ~~~~~~~~~~~~~~~~~~-~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~l~g~~~~~~~~~  322 (392)
T PRK12382        250 MAGFTLTAFGGAFVLMRV-LFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTA-----WV-ALAGAALTGAGCSLIFPA  322 (392)
T ss_pred             hhHHHHHHHHHHHHHHHH-HHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccH-----HH-HHHHHHHHHHHHHhHHHH
Confidence            456667777877777754 67899999999999998888888877766554321     21 223445556777777888


Q ss_pred             HHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916          101 LFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus       101 ~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      ..+.+.+..|+|+||+++|+.++...++..+||.++|
T Consensus       323 ~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g  359 (392)
T PRK12382        323 LGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAG  359 (392)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888899999999999999999999999999998776

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.93  E-value=2.4e-09  Score=83.92  Aligned_cols=121  Identities=12%  Similarity=0.086  Sum_probs=90.4

Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 043916           10 RKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVM   89 (138)
Q Consensus        10 ~~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~   89 (138)
                      ..++++|+|+.|++++.+..-+...+.-+ +++.+.||||.|+++..+..+..+-.....++...++  .|..+.... +
T Consensus        39 ~i~~~~~LS~~q~~ll~aiPil~GallRl-~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~--~~~ll~~gl-l  114 (417)
T COG2223          39 FIKSDFGLSEGQKGLLVAIPILVGALLRL-PYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPS--TWQLLVIGL-L  114 (417)
T ss_pred             hhccccCCCHHHHHHHHHHHHHHhHHHHH-HHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCc--hHHHHHHHH-H
Confidence            34589999999999999999999999966 8899999999999999999886665555555444322  244444343 3


Q ss_pred             HHHHHHHHHHHHHHHHhhcccchhhhhhhhHHH---HHHHHHhhHccCC
Q 043916           90 KNVLSVSIITRLFLLQNRAVEQHQRGAANGLVM---TVVSLTKTAGPAV  135 (138)
Q Consensus        90 ~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~---s~~sl~r~igP~i  135 (138)
                      .++++ ..|...+..+|+..|||+||.++|++.   ...++.+.++|.+
T Consensus       115 ~G~~G-asFav~m~~~s~~fP~~~qG~AlGI~g~GN~G~av~q~~~P~v  162 (417)
T COG2223         115 LGLAG-ASFAVGMPNASFFFPKEKQGLALGIAGAGNLGVAVAQLVAPLV  162 (417)
T ss_pred             Hhccc-ceehcccccccccCChhhhhHHHHHhccccccHHHHHHHHHHH
Confidence            34333 355678999999999999999999985   4445555666654

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.92  E-value=1.3e-08  Score=77.81  Aligned_cols=117  Identities=14%  Similarity=0.079  Sum_probs=85.8

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV   92 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~   92 (138)
                      ..+|.++.+.|+............+ .+.+++.||+|+|+....+.......+..+.+.+.     .|. +.....+...
T Consensus       228 ~~~g~~~~~~g~~~~~~~~~~~~~~-~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~g~  300 (375)
T TIGR00899       228 HELGLPDKLAGLMMGTAAGLEIPFM-LLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNS-----LWA-LLMLQLLNAI  300 (375)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHH-HhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH-----HHH-HHHHHHHHHH
Confidence            3478999999998888777666664 47789999999999888877665555544443221     122 2233445566


Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      +.+...|.....+.+..|+ ++|+++|+.+....++..+||.++|
T Consensus       301 ~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g  344 (375)
T TIGR00899       301 FIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGG  344 (375)
T ss_pred             HHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666777777888887765 6789999999999999999998876

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.92  E-value=8.7e-09  Score=89.90  Aligned_cols=113  Identities=14%  Similarity=0.096  Sum_probs=86.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHH--HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 043916           20 KNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVL--SITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSI   97 (138)
Q Consensus        20 ~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~--~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~   97 (138)
                      ...++..+.+.+..++++. +.+++.||+|+|++.+.....  ......++.+.   .. ..| .++..+++++++.++.
T Consensus        52 ~~~~l~~~~~~l~~~l~~~-~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~---~~-s~~-~l~~~~~l~gi~~a~~  125 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSA-LAGQLADKYDKAKLAKILKFAEIGIAALAIYGFH---LN-SVP-LLFAALFLMGIHSALF  125 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhh-hHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH---Hh-hHH-HHHHHHHHHHHHHHhh
Confidence            4578888889999998854 779999999999976542222  21111111111   01 123 3557788999999999


Q ss_pred             HHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916           98 ITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRGA  138 (138)
Q Consensus        98 ~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G~  138 (138)
                      .|+..+++.+..|+++|+++||+.++..+++..+||+++|+
T Consensus       126 ~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~  166 (1140)
T PRK06814        126 GPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGL  166 (1140)
T ss_pred             chHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999873

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.92  E-value=1e-08  Score=80.12  Aligned_cols=117  Identities=11%  Similarity=0.053  Sum_probs=85.9

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhh-----hhHH-HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 043916           14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERII-----GPII-ITRIAGVLSITLLTSYTYIAMLSGFSLALFINCAS   87 (138)
Q Consensus        14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~-----g~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~   87 (138)
                      +.|+|.+|||++....- . .+.|. +.+++.||+     |+|| ....+.....+.+..+.+....  ...|.. ....
T Consensus        28 ~~g~~~~~ig~~~~~~~-~-~~~~~-l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~--~~~~~l-~~~~  101 (402)
T PRK11902         28 VEGLDIQTIGFFSLVGQ-A-YIFKF-LWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPH--AALWPL-AGLA  101 (402)
T ss_pred             HcCCCHHHHHHHHHHHH-H-HHHHH-HHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCcc--chHHHH-HHHH
Confidence            35999999999855444 3 35654 779999999     7765 6777777776666655443211  112332 3333


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCc
Q 043916           88 VMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVR  136 (138)
Q Consensus        88 ~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~  136 (138)
                      .+.....+...|...+++.+..|+|||++.+++.+...+++..+|+.++
T Consensus       102 ~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~  150 (402)
T PRK11902        102 VLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLA  150 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHH
Confidence            4456777888899999999999999999999999999999999988754

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=98.91  E-value=2e-08  Score=80.63  Aligned_cols=107  Identities=9%  Similarity=0.009  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 043916           27 AISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLA--LFINCASVMKNVLSVSIITRLFLL  104 (138)
Q Consensus        27 ~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~p~~~~l  104 (138)
                      +..-+...+.+. +++++.||+|+|+++..+..++.++.+++.+.++....-.|  ..+...+++++++.+..+|...++
T Consensus        64 ~~~~l~~~ig~~-~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~  142 (490)
T PRK10642         64 SVPFLIRPLGGL-FFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIF  142 (490)
T ss_pred             HHHHHHHHHHHH-HHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHH
Confidence            444455666644 77999999999999999999999999888877654311112  246678899999999999999999


Q ss_pred             HhhcccchhhhhhhhHHHHHHHHHhhHccC
Q 043916          105 QNRAVEQHQRGAANGLVMTVVSLTKTAGPA  134 (138)
Q Consensus       105 i~~~~p~~~~G~~~G~~~s~~sl~r~igP~  134 (138)
                      +++..|+++||+..|+.+....+|-.+|+.
T Consensus       143 ~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~  172 (490)
T PRK10642        143 VAEYSPDRKRGFMGSWLDFGSIAGFVLGAG  172 (490)
T ss_pred             HHHhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998877777777663

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.91  E-value=2.3e-08  Score=80.44  Aligned_cols=121  Identities=12%  Similarity=-0.034  Sum_probs=97.3

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV   92 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~   92 (138)
                      ...|+|+.+.|..+...++...+. ..+.+++.||+|+|+....+..+..+++..+.......+  .|. ......+.++
T Consensus       288 ~v~g~s~~~ag~~~~~~~~~~~~~-~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~--~~~-~~~~~~l~G~  363 (495)
T PRK14995        288 FVHGLSPLEAGMFMLPVMVASGFS-GPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQ--QWQ-AWGLMALLGF  363 (495)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCc--hHH-HHHHHHHHHH
Confidence            347999999999999999999888 568899999999999998888887777665554322111  122 2234556688


Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      +.+...+.....+.+.+|+|++|++.|+.+....+|.++|+.+.|
T Consensus       364 g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g  408 (495)
T PRK14995        364 SAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFG  408 (495)
T ss_pred             hHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888889999999999999999999999999999998765

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.90  E-value=2.5e-08  Score=84.08  Aligned_cols=110  Identities=15%  Similarity=0.092  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043916           21 NVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITR  100 (138)
Q Consensus        21 ~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~  100 (138)
                      .........++..++.+ ++..++.||+|+|+++..+..+.++..+++++....     +..+ ....+...+.+..++.
T Consensus       596 ~~~~~~~l~~l~~i~G~-il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~-----~~ll-~~~~l~g~~~~~~~~~  668 (742)
T TIGR01299       596 MIYFVNFLGTLAVLPGN-IVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSE-----SAMI-ALLCLFGGLSIAAWNA  668 (742)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccH-----HHHH-HHHHHHHHHHHHHHHH
Confidence            45566667777777774 477999999999999999999988888777665432     1112 2223434555667788


Q ss_pred             HHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916          101 LFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus       101 ~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      ..+++.+..|.++||+.+|+.++...+|.++||.++|
T Consensus       669 ~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g  705 (742)
T TIGR01299       669 LDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFG  705 (742)
T ss_pred             HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998875

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PTZ00207 hypothetical protein; Provisional

Probab=98.90  E-value=3.5e-08  Score=81.29  Aligned_cols=117  Identities=10%  Similarity=0.098  Sum_probs=92.0

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhh-hHHHHHHHHHHHHH
Q 043916           11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLS-GFSLALFINCASVM   89 (138)
Q Consensus        11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~l~~~~~~   89 (138)
                      .+..+|+|..|++++.+. |......|+ +.+++.||+|+|+++.++...+.++++++++...-. ....|. +.+.+.+
T Consensus        53 L~~~lgls~~~l~~i~sv-g~~~g~~~l-p~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~-l~l~r~l  129 (591)
T PTZ00207         53 MQARYNLTQRDLSTITTV-GIAVGYFLL-PYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVR-LSVYNGL  129 (591)
T ss_pred             HHHHhCcCHHHHHHHHHH-HHHHHHHHH-HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHH-HHHHHHH
Confidence            345789999999999876 555666766 569999999999999999999999999888752100 001232 3455667


Q ss_pred             HHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhH
Q 043916           90 KNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTA  131 (138)
Q Consensus        90 ~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~i  131 (138)
                      .+.+.+..++.....+.++.| ++||++.|+.++...+|.++
T Consensus       130 ~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI  170 (591)
T PTZ00207        130 MTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAI  170 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHH
Confidence            788888888888888888886 78999999999999999975

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.90  E-value=3.6e-08  Score=76.53  Aligned_cols=117  Identities=6%  Similarity=-0.017  Sum_probs=89.1

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916           14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL   93 (138)
Q Consensus        14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~   93 (138)
                      +.|+++.++|..++...+...+. .++.+++.||+++++....+.....+.+.++++.++     .|. +.....+.+++
T Consensus       234 ~~g~s~~~~g~~~~~~~~~~~~~-~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~l~g~~  306 (382)
T PRK11128        234 AAGYSASTIGYLWSLGVVAEVLI-FAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTA-----LPW-LIVIQILHCGT  306 (382)
T ss_pred             HCCCCHhHHHHHHHHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhh-----HHH-HHHHHHHHHHH
Confidence            36889999999999887766666 458899999999999999998888887776665432     132 22345566777


Q ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhHHH-HHHHHHhhHccCCcCC
Q 043916           94 SVSIITRLFLLQNRAVEQHQRGAANGLVM-TVVSLTKTAGPAVRGA  138 (138)
Q Consensus        94 ~~~~~p~~~~li~~~~p~~~~G~~~G~~~-s~~sl~r~igP~i~G~  138 (138)
                      .+...|.....+.+. +++++|+.+|+.+ .....+..+||.++|.
T Consensus       307 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~  351 (382)
T PRK11128        307 FTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGF  351 (382)
T ss_pred             HHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777788888888886 6677899999886 4456777899988773

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.87  E-value=3.8e-08  Score=76.71  Aligned_cols=117  Identities=13%  Similarity=0.134  Sum_probs=80.2

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV   92 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~   92 (138)
                      +.+|+++.+.|++.+......++. .++.+++.||+|+|+....+.......+..+....+     .+.. ...+.+..+
T Consensus       245 ~~~~~~~~~~g~~~~~~~~~~i~~-~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-l~~~~l~~~  317 (393)
T PRK15011        245 NELHLPEKLAGVMMGTAAGLEIPT-MLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHS-----PAIL-LGLQLLNAI  317 (393)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhh-----HHHH-HHHHHHHHH
Confidence            458999999999888777666555 558899999999999888766555444333322211     1211 122333333


Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      ..+...+......++..| ++||+++|+.+....++..+||.++|
T Consensus       318 ~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G  361 (393)
T PRK15011        318 YIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAG  361 (393)
T ss_pred             HHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            444444555666777776 56999999999999999999998876

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.87  E-value=1.7e-08  Score=76.71  Aligned_cols=122  Identities=12%  Similarity=0.055  Sum_probs=79.8

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHH--HHHHHHH--HHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPII--ITRIAGV--LSITLLTSYTYIAMLSGFSLALFINCASV   88 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~--~~~~~~~--~~~~~~~~~p~~~~~~~~~~~~~l~~~~~   88 (138)
                      ..+|+|+.+.++..+..++...+.+ .+.+++.||+++|+  .......  ..........+....... .+..+ ....
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~  320 (399)
T TIGR00893       244 QERGLSILEAGFMASLPGIVGFIGM-ILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNI-PYAAL-ALVA  320 (399)
T ss_pred             HHhcccHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchh-HHHHH-HHHH
Confidence            3478999999999999999998885 47799999999986  1111111  010111111111110111 12111 1222


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916           89 MKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRGA  138 (138)
Q Consensus        89 ~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G~  138 (138)
                      +...+.+ ..|...+++++..|+|+||+++|+.+....++..++|.+.|+
T Consensus       321 ~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~  369 (399)
T TIGR00893       321 LGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGA  369 (399)
T ss_pred             HHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhh
Confidence            2222333 678899999999999999999999999999999999998763

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.86  E-value=4.6e-08  Score=75.82  Aligned_cols=114  Identities=14%  Similarity=0.135  Sum_probs=88.5

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 043916           15 LSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLS   94 (138)
Q Consensus        15 lg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~   94 (138)
                      .|.++.++|+..+..++..++.|. ..+++.||+++++++..+.....+......  .. .    + . ...+.+...+.
T Consensus       230 ~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~~-~----~-~-~~~~~l~g~~~  299 (381)
T PRK03633        230 QGMSDASIGFWMALLVSAGILGQW-PIGRLADRFGRLLVLRVQVFVVILGSIAML--SQ-A----A-M-APALFILGAAG  299 (381)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHh-hhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--hh-H----H-H-HHHHHHHHHHH
Confidence            588999999999999999999976 569999999999999888777666554332  11 0    0 0 11223334555


Q ss_pred             HHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916           95 VSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRGA  138 (138)
Q Consensus        95 ~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G~  138 (138)
                      ....|..++.+.+..|+|+++..++..+...++|..+||.++|+
T Consensus       300 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~  343 (381)
T PRK03633        300 FTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAM  343 (381)
T ss_pred             HhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66789999999999999999999999888999999999998763

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.86  E-value=3e-10  Score=94.13  Aligned_cols=126  Identities=11%  Similarity=0.071  Sum_probs=108.4

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhh--------------
Q 043916           11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSG--------------   76 (138)
Q Consensus        11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~--------------   76 (138)
                      ....|++++.|.|++.+.+-+..++.++ +..++.||++++|.+.++.+++.++.+++.+.+++.+              
T Consensus        59 iek~F~lss~~~G~i~s~~~i~~~~~~i-~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~  137 (633)
T TIGR00805        59 IERRFKLSTSSSGLINGSYEIGNLLLII-FVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNL  137 (633)
T ss_pred             hhhhhCCCCCcceeeeehhhHHHHHHHH-HHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccc
Confidence            3457999999999999999999999966 6789999999999999999999999988876642210              


Q ss_pred             -------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHH
Q 043916           77 -------------------------------FSLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVV  125 (138)
Q Consensus        77 -------------------------------~~~~~~l~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~  125 (138)
                                                     ...+..+++.+++++++.+..+|...+++.+.+|+++|++..|+.++..
T Consensus       138 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~  217 (633)
T TIGR00805       138 SSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIA  217 (633)
T ss_pred             cccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHH
Confidence                                           0023455678899999999999999999999999999999999999999


Q ss_pred             HHHhhHccCCcC
Q 043916          126 SLTKTAGPAVRG  137 (138)
Q Consensus       126 sl~r~igP~i~G  137 (138)
                      .+|.++||+++|
T Consensus       218 ~iG~~lG~llgg  229 (633)
T TIGR00805       218 VFGPAFGYLLGS  229 (633)
T ss_pred             HhhhHHHHHHHH
Confidence            999999998876

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.85  E-value=2.8e-08  Score=77.68  Aligned_cols=119  Identities=14%  Similarity=0.133  Sum_probs=82.9

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916           14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL   93 (138)
Q Consensus        14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~   93 (138)
                      +.|+++.+.+...+..++...+.+. +.+++.||+++|+.+..+..+..+..........  ....+..  .........
T Consensus       260 ~~g~~~~~~~~~~~~~~~~~~~g~~-~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~  334 (426)
T PRK12307        260 GEGFDTGVVSNLMTAAAFGTVLGNI-VWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQ--DNYLLLG--ACLFGLMAT  334 (426)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcc--ccHHHHH--HHHHHHHHh
Confidence            3588999999999999999888854 7799999999999998888766555443332211  1111111  111111111


Q ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           94 SVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        94 ~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      .....+.....+.+.+|+++||+++|+.++...++..+||.+.|
T Consensus       335 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g  378 (426)
T PRK12307        335 NVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAAT  378 (426)
T ss_pred             cccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHH
Confidence            11123445677889999999999999999999999999998876

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.85  E-value=2.6e-08  Score=76.06  Aligned_cols=121  Identities=14%  Similarity=0.021  Sum_probs=84.4

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHH-HHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLL-TSYTYIAMLSGFSLALFINCASVMKN   91 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~   91 (138)
                      ..+|+++.+.+......++...+.+. +.+++.||+|+|+.+..+..+..... ..........  ..+. ......+..
T Consensus       248 ~~~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~g  323 (394)
T TIGR00883       248 QTLGLSANSALLVLMLSLILFFITIP-LSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSG--SFTL-FFFLVLGLA  323 (394)
T ss_pred             HhcCCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCC--chHH-HHHHHHHHH
Confidence            34789999999999999999988854 77999999999998775544333222 1111111001  1122 223334556


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhhhhhhHH-HHHHHHHhhHccCCcC
Q 043916           92 VLSVSIITRLFLLQNRAVEQHQRGAANGLV-MTVVSLTKTAGPAVRG  137 (138)
Q Consensus        92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~-~s~~sl~r~igP~i~G  137 (138)
                      .+.+...+...+++.+..|+|+||+.+|+. +....++..++|.++|
T Consensus       324 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g  370 (394)
T TIGR00883       324 LIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAA  370 (394)
T ss_pred             HHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHH
Confidence            666677788999999999999999999985 4445678889998776

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK09952 shikimate transporter; Provisional

Probab=98.85  E-value=4.6e-08  Score=77.50  Aligned_cols=96  Identities=5%  Similarity=-0.042  Sum_probs=79.8

Q ss_pred             hhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhh
Q 043916           39 TLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLA--LFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGA  116 (138)
Q Consensus        39 ~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~  116 (138)
                      .+++++.||+|+|+.+..+..++.+..+++.+.++......|  ..+...+.+++++.+..+|....++++..|+++||+
T Consensus        82 ~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~  161 (438)
T PRK09952         82 VVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAF  161 (438)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcH
Confidence            467999999999999999999999999888887664321111  235567889999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHhhHccC
Q 043916          117 ANGLVMTVVSLTKTAGPA  134 (138)
Q Consensus       117 ~~G~~~s~~sl~r~igP~  134 (138)
                      ..+..+....+|..+++.
T Consensus       162 ~~~~~~~g~~~G~~l~~~  179 (438)
T PRK09952        162 YSSGVQVGYGVGLLLSTG  179 (438)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999988888887753

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.85  E-value=4.6e-08  Score=78.54  Aligned_cols=121  Identities=16%  Similarity=0.264  Sum_probs=103.2

Q ss_pred             EeeeecCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 043916            3 SLWAVSLRKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALF   82 (138)
Q Consensus         3 pl~~~~~~~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~   82 (138)
                      +++...+     ++|+.++.+...+..+....+.|.+..|.+.+.+|++++...|+.........+.+.+..     |..
T Consensus       265 ~~yl~~~-----f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~-----w~~  334 (463)
T KOG2816|consen  265 LLYLKAK-----FGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATET-----WMM  334 (463)
T ss_pred             EEEEeee-----cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccc-----hhh
Confidence            4556666     999999999999999999999999999999999999999999999998888888776652     332


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCC
Q 043916           83 INCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAV  135 (138)
Q Consensus        83 l~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i  135 (138)
                        ....+.........|+..+.+++.+++||||+++++.+-+.++...++|.+
T Consensus       335 --~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~  385 (463)
T KOG2816|consen  335 --FAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPAL  385 (463)
T ss_pred             --hHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHH
Confidence              222344567778889999999999999999999999999999998888864

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.84  E-value=4e-09  Score=83.77  Aligned_cols=120  Identities=8%  Similarity=0.038  Sum_probs=105.9

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916           11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK   90 (138)
Q Consensus        11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~   90 (138)
                      .++-+|.+.++.|++.+..-+...+. .++++.+.||+.+++++..|..+|..+.++..+...     .|. +.+.+.+.
T Consensus        59 v~~~fni~~s~~Gll~~vf~v~~~i~-sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~-----Fwq-~~l~R~~v  131 (493)
T KOG1330|consen   59 VQTYFNISDSELGLLQTVFIVVFMIA-SPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNH-----FWQ-VLLCRGFV  131 (493)
T ss_pred             HHHhcCCCchhccchhHHHHHHHHHH-HHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHH-----HHH-HHHHHHHh
Confidence            34578999999999999999999998 889999999999999999999999999988877633     243 55788888


Q ss_pred             HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      ++|++...|..++++++..|+++|+++.|+.+-....|-.+|=+.++
T Consensus       132 GiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs  178 (493)
T KOG1330|consen  132 GIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGS  178 (493)
T ss_pred             ccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeee
Confidence            99999999999999999999999999999999998888887766554

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.83  E-value=5.7e-08  Score=75.43  Aligned_cols=111  Identities=14%  Similarity=0.133  Sum_probs=85.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043916           20 KNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIIT   99 (138)
Q Consensus        20 ~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p   99 (138)
                      ++.++..+..++...+.+. +.+++.||++++|....+.....+.+..+...++     .+. +.....+.+++.+..+|
T Consensus       249 ~~~~~~~~~~~~~~~~~~~-~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~l~G~~~~~~~~  321 (399)
T PRK05122        249 DGAALALTLFGVAFVGARL-LFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPS-----PWM-ALIGAALTGFGFSLVFP  321 (399)
T ss_pred             ccchHHHHHHHHHHHHHHH-HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcc-----HHH-HHHHHHHHHHhHHHHHH
Confidence            3456667778888777754 6799999999999998888877777666554332     122 22344566777777888


Q ss_pred             HHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916          100 RLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus       100 ~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      .....+.+..|+|+||++.|+.++...++..++|.+.|
T Consensus       322 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g  359 (399)
T PRK05122        322 ALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAG  359 (399)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888889999999999999999999999999887765

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.81  E-value=1.4e-07  Score=75.26  Aligned_cols=118  Identities=16%  Similarity=0.121  Sum_probs=85.8

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhh--hhhHHHHHHH--HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 043916           14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERI--IGPIIITRIA--GVLSITLLTSYTYIAMLSGFSLALFINCASVM   89 (138)
Q Consensus        14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~--~g~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~   89 (138)
                      .+|++..+.|++++..++..++.+. +.+++.||  +++++.....  .....+.+++++..++     .|. +.....+
T Consensus       270 ~~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~-----~~~-~~i~~~~  342 (455)
T TIGR00892       270 DKGVDEYEAAFLLSIIGFVDIFARP-SCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGD-----YTG-LVIYCIF  342 (455)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhch-----HHH-HHHHHHH
Confidence            4689999999999999999998865 66778776  4444444333  3333333334433322     122 2334556


Q ss_pred             HHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916           90 KNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRGA  138 (138)
Q Consensus        90 ~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G~  138 (138)
                      ..++.+...+...+++.+.+|++++|+.+|+.++..+++..+||.++|+
T Consensus       343 ~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~  391 (455)
T TIGR00892       343 FGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGR  391 (455)
T ss_pred             HHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceee
Confidence            6677777788889999999999999999999999999999999999874

>PRK03545 putative arabinose transporter; Provisional

Probab=98.81  E-value=6.1e-08  Score=75.28  Aligned_cols=117  Identities=9%  Similarity=0.009  Sum_probs=81.3

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHH-HHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLL-TSYTYIAMLSGFSLALFINCASVMKN   91 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~   91 (138)
                      ...|+|+.+.|+..+..++...+.+. +.+++.||+++++....... ..... .+.+..++     .+. +.....+..
T Consensus       234 ~~~g~s~~~~~~~~~~~~~~~~~g~~-~~g~l~dr~~~~~~~~~~~~-~~~~~~~l~~~~~~-----~~~-~~~~~~l~g  305 (390)
T PRK03545        234 QVAGLSENFATLLLLLFGGAGIIGSV-LFSRLGNRHPSGFLLIAIAL-LLVCLLLLLPAANS-----EWH-LSVLSIFWG  305 (390)
T ss_pred             HhcCCCccHHHHHHHHHHHHHHHHHH-HHHHHhhccchhHHHHHHHH-HHHHHHHHHHHhch-----HHH-HHHHHHHHH
Confidence            44789999999999999999998855 67999999998765443333 33332 22232221     121 222333445


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916           92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRGA  138 (138)
Q Consensus        92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G~  138 (138)
                      ++.....+.....+.+..| |+||+++|+.++...++..+||.++|+
T Consensus       306 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~  351 (390)
T PRK03545        306 IAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQ  351 (390)
T ss_pred             HHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555667777777766 689999999999999999999998763

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.80  E-value=5e-08  Score=75.61  Aligned_cols=110  Identities=15%  Similarity=0.184  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043916           21 NVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITR  100 (138)
Q Consensus        21 ~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~  100 (138)
                      ..|.+.+..++...+. ....+++.||+++++.+..+.....+..+...+...     .|. +.....+..++.+...|.
T Consensus       259 ~~g~~~~~~~l~~~~~-~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~g~~~~~~~~~  331 (408)
T PRK09874        259 ISGMIASVPGVAALLS-APRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQT-----PLQ-LGILRFLLGAADGALLPA  331 (408)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhcc-----HHH-HHHHHHHHHhhhHhhHHH
Confidence            3566666777777766 446789999999999999888877666554443322     122 223445667778888899


Q ss_pred             HHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916          101 LFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus       101 ~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      ..+.+.+..|++++|+..|+.++...++..+||.++|
T Consensus       332 ~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G  368 (408)
T PRK09874        332 VQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGA  368 (408)
T ss_pred             HHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHH
Confidence            9999999999999999999999999999999999876

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.80  E-value=3.7e-08  Score=79.58  Aligned_cols=120  Identities=7%  Similarity=-0.062  Sum_probs=92.7

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhh-hhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERI-IGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN   91 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~-~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~   91 (138)
                      ..+|+|..+.+++.+.+....... ..+.+++.|| +|+|+.+..+..+..+++.++.+....     +..+...+.+..
T Consensus        50 ~~lg~s~~~a~~~~~~~~~~~~~~-~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~-----~~~l~~~~~l~g  123 (500)
T PRK09584         50 KQLGMSEADSITLFSSFSALVYGL-VAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHD-----AGIVYMGMATIA  123 (500)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhccc-----HHHHHHHHHHHH
Confidence            458999999998888776555554 3478999999 599999999999999888777654221     122334556677


Q ss_pred             HHHHHHHHHHHHHHhhcccch--hhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916           92 VLSVSIITRLFLLQNRAVEQH--QRGAANGLVMTVVSLTKTAGPAVRGA  138 (138)
Q Consensus        92 ~~~~~~~p~~~~li~~~~p~~--~~G~~~G~~~s~~sl~r~igP~i~G~  138 (138)
                      ++.+...|...+++++..|++  +|+++.++......+|..+||.++|+
T Consensus       124 ig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~  172 (500)
T PRK09584        124 VGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPW  172 (500)
T ss_pred             HhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHH
Confidence            888888888899999999864  35568888899999999999988763

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.79  E-value=3.1e-08  Score=77.06  Aligned_cols=122  Identities=7%  Similarity=-0.019  Sum_probs=82.0

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhh--hHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLS--GFSLALFINCASVMK   90 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~l~~~~~~~   90 (138)
                      +.+|+|+.|+|++.+...+...+.|. +.+++.||+|+||.+..+.....+............  ....+........+.
T Consensus        31 ~~~g~s~~~~g~~~~~~~l~~~i~~~-~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (396)
T TIGR00882        31 DVNGLSKTDTGIVFSCISLFSILFQP-LFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYL  109 (396)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            34899999999999999999999987 889999999999999887766554332211110000  000111122233444


Q ss_pred             HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      .++.+...|....+..+..  +++++..|...+..++|.++||.++|
T Consensus       110 g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g  154 (396)
T TIGR00882       110 GFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAG  154 (396)
T ss_pred             HHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHh
Confidence            5555556666666655543  34466778888889999999998876

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.79  E-value=4.9e-08  Score=76.56  Aligned_cols=117  Identities=9%  Similarity=0.068  Sum_probs=91.2

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 043916           15 LSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLS   94 (138)
Q Consensus        15 lg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~   94 (138)
                      .+.+.+++|++.+..++...+.+. +.+++.||+|+|+....+..+..+.+.++++..+.     |. +.....+...+.
T Consensus       257 ~~~~~~~~g~~~~~~~~~~~~~~~-~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~-----~~-~~~~~~l~g~~~  329 (420)
T PRK09528        257 PEQGTRVFGYLNSFQVFLEALIMF-FAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGP-----LE-VSILKLLHAFEV  329 (420)
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccH-----HH-HHHHHHHHHHHH
Confidence            467788999999999999988855 78999999999999999888888877777665432     32 223445556666


Q ss_pred             HHHHHHHHHHHhhcccchhhhhhhhH-HHHHHHHHhhHccCCcCC
Q 043916           95 VSIITRLFLLQNRAVEQHQRGAANGL-VMTVVSLTKTAGPAVRGA  138 (138)
Q Consensus        95 ~~~~p~~~~li~~~~p~~~~G~~~G~-~~s~~sl~r~igP~i~G~  138 (138)
                      ....+.....+++..|++.+++..+. .+....++.++||.+.|+
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~  374 (420)
T PRK09528        330 PFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGN  374 (420)
T ss_pred             HHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHH
Confidence            66667777888999999999998776 567788999999988763

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.77  E-value=2.1e-08  Score=78.31  Aligned_cols=114  Identities=13%  Similarity=0.058  Sum_probs=90.5

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 043916           17 YSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVS   96 (138)
Q Consensus        17 ~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~   96 (138)
                      .+..--|.+-+.+++...+. ....+.+.||+|+|-++.+|....++.+.+.....++      ..++..+++.++..+-
T Consensus        65 ~~~~yaGflGSsF~ilQ~~s-S~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F------~afv~aR~l~Gi~kgn  137 (451)
T KOG2615|consen   65 ASVFYAGFLGSSFSILQFIS-SPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNF------AAFVLARFLGGIFKGN  137 (451)
T ss_pred             ccchhhhhHhhHHHHHHHHh-hhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhhhccCc
Confidence            45555677777888888777 6678999999999999999999988888777665543      1233345555555443


Q ss_pred             HHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916           97 IITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRGA  138 (138)
Q Consensus        97 ~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G~  138 (138)
                      . ..+.+++++.+++|+|+..++...+.-++|-.+||.+||+
T Consensus       138 l-~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgy  178 (451)
T KOG2615|consen  138 L-SVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGY  178 (451)
T ss_pred             h-HHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhH
Confidence            3 4589999999999999999999999999999999999985

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.77  E-value=2.4e-08  Score=80.70  Aligned_cols=118  Identities=9%  Similarity=0.062  Sum_probs=91.0

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhh-hhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916           14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERII-GPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV   92 (138)
Q Consensus        14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~-g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~   92 (138)
                      ++|++..+.+.+.+.+.....+. ..+.+++.||+ |+||.+.++..+..++..++.......    +. +.....+..+
T Consensus        39 ~lgls~~~a~~i~~~~~~~~~l~-~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~----~~-~~l~l~li~i  112 (493)
T PRK15462         39 QLKYDDNHAYELFSAYCSLVYVT-PILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHP----SF-LYLSLAIIVC  112 (493)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcch----hH-HHHHHHHHHH
Confidence            48999999999999999888888 44889999999 999999999998888776554321100    11 1122223345


Q ss_pred             HHHHHHHHHHHHHhhcccch--hhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           93 LSVSIITRLFLLQNRAVEQH--QRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        93 ~~~~~~p~~~~li~~~~p~~--~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      +.+...|...+++++..|++  +|.+..++......++..++|.+.|
T Consensus       113 G~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g  159 (493)
T PRK15462        113 GYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACG  159 (493)
T ss_pred             hcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHH
Confidence            66666687889999999875  7999999999999999999998865

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.77  E-value=4.8e-08  Score=76.20  Aligned_cols=124  Identities=10%  Similarity=-0.068  Sum_probs=86.9

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhH-----HHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGF-----SLALFINCAS   87 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~-----~~~~~l~~~~   87 (138)
                      ..+|++..+.++.....++...+.+. +.+++.||+++|+....++.+..+.+..+.+.......     ..+..+....
T Consensus       312 ~~~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (481)
T TIGR00879       312 ENAGVSTDHAFLVSIIVGAVNFAFTF-VAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFIL  390 (481)
T ss_pred             HHcCCCchHHHHHHHHHHHHHHHHHH-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHH
Confidence            45788888899999999988888854 67999999999999998888777776665532111000     0111111111


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           88 VMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        88 ~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      ......+....|....++++..|+++||+.+|+.+....++..++|.+.|
T Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~  440 (481)
T TIGR00879       391 LFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFP  440 (481)
T ss_pred             HHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            12122222233566777799999999999999999999999999998754

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.74  E-value=2.5e-07  Score=74.60  Aligned_cols=123  Identities=13%  Similarity=0.090  Sum_probs=85.8

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV   92 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~   92 (138)
                      ..+|+|++++|+.....+....+...++.+++.||+|++|....+.....+..+.+......... .+. +.....+..+
T Consensus       251 ~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~-~~~-l~~~~~l~~~  328 (491)
T PRK11010        251 RGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKN-LYS-MGAAVFFENL  328 (491)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccc-HHH-HHHHHHHHHH
Confidence            35899999999998767654454557789999999999987776555444332222111111111 122 2233445555


Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      ..++..+...++.++.+|++.+|+..|+.++...+++.++|.++|
T Consensus       329 ~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G  373 (491)
T PRK11010        329 CGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAG  373 (491)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            667777888899999999999999999999999999998877665

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.73  E-value=3.1e-08  Score=77.73  Aligned_cols=121  Identities=12%  Similarity=0.008  Sum_probs=75.8

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916           14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL   93 (138)
Q Consensus        14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~   93 (138)
                      .+|+|+.|+|++.+...+...+.|. +.+++.||+|+||....+..........+..... ........+ ....+..+.
T Consensus        40 ~~g~s~~~~g~~~s~~~l~~~i~~~-~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~  116 (420)
T PRK09528         40 INGLSGTDTGIIFSANSLFALLFQP-LYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVF-APLLQYNIL-LGAIVGGIY  116 (420)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHH
Confidence            4899999999999999999999987 8899999999999988766655544322111100 000000000 111111122


Q ss_pred             HHHHHHHHHHHHhhccc--chhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           94 SVSIITRLFLLQNRAVE--QHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        94 ~~~~~p~~~~li~~~~p--~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      .+..++.....+++..+  ++++|...|..+...+++.++||.++|
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g  162 (420)
T PRK09528        117 LGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAG  162 (420)
T ss_pred             hhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHH
Confidence            22222222222333333  356788999999999999999998876

>TIGR00896 CynX cyanate transporter

Probab=98.73  E-value=2e-07  Score=71.42  Aligned_cols=116  Identities=19%  Similarity=0.202  Sum_probs=85.2

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhh-hHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916           14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIG-PIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV   92 (138)
Q Consensus        14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~   92 (138)
                      +.|+|+++.|...+..++..++.+. +.+++.||++ +|+....+..+..+....+.+....     +..+  ...+.++
T Consensus       226 ~~g~~~~~~g~~~~~~~~~~i~~~~-~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~l~g~  297 (355)
T TIGR00896       226 SHGASAATAGSLLALMQLAQAASAL-LIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMH-----GLWA--WALVLGL  297 (355)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHH-hHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhh-----HHHH--HHHHHHH
Confidence            3688999999999999999999855 7789999995 5556667666666665544433221     1111  2345577


Q ss_pred             HHHHHHHHHHHHHhhccc-chhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           93 LSVSIITRLFLLQNRAVE-QHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        93 ~~~~~~p~~~~li~~~~p-~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      +.+..+|...+.+.+..+ +|++|+..|+.++...++..+||.+.|
T Consensus       298 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G  343 (355)
T TIGR00896       298 GQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVG  343 (355)
T ss_pred             hhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            778888877777665554 578899999999999999999998776

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.73  E-value=1.8e-07  Score=75.37  Aligned_cols=124  Identities=12%  Similarity=0.018  Sum_probs=93.5

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHh----hhhhHHHHHHH-HHHHHHHHHHHhhhhhhhh---------HH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVER----IIGPIIITRIA-GVLSITLLTSYTYIAMLSG---------FS   78 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~----~~g~~~~~~~~-~~~~~~~~~~~p~~~~~~~---------~~   78 (138)
                      ..+|.++.+.++++....+...+.|. +.+++.|    |+|+||.+..+ .....+.+.++++......         ..
T Consensus        32 ~~lg~~~~~~~~i~~~~~l~~~i~~P-i~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~  110 (477)
T TIGR01301        32 QELGIPHAWASIIWLCGPLSGLLVQP-LVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTK  110 (477)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHh-HeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccch
Confidence            45889999999999999999999976 7799999    59999998874 5666667777776544210         00


Q ss_pred             HH--HHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhh--hhhhhHHHHHHHHHhhHccCCcC
Q 043916           79 LA--LFINCASVMKNVLSVSIITRLFLLQNRAVEQHQR--GAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        79 ~~--~~l~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~--G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      .+  ........+..+..+...+...+++.+.+|+++|  +.++++.+....+|..+|+.++|
T Consensus       111 ~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~  173 (477)
T TIGR01301       111 PRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGA  173 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11  1122233344556676777789999999998754  78999999999999999998875

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00788 fbt folate/biopterin transporter

Probab=98.71  E-value=2.3e-08  Score=80.19  Aligned_cols=123  Identities=11%  Similarity=0.061  Sum_probs=97.1

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhh-hh---h-HHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAM-LS---G-FSLALFINCAS   87 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~-~~---~-~~~~~~l~~~~   87 (138)
                      +.+|++++++|......++..++.+. ..+++.+|++.|+++.++..+........+.... ..   + ...| .+....
T Consensus       281 ~~lG~s~~~~G~~~~~~~v~~i~g~~-~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~-~~~~~~  358 (468)
T TIGR00788       281 QCLPGGPSFSGMSKVVGNLGSLCGVG-GYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEV-FVLGDS  358 (468)
T ss_pred             ccCCCCcchhhhHHHHHHHHHHHHHH-HHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCee-eeeehh
Confidence            57999999999999999999999955 6778889999999999999988887755442211 00   0 0011 122344


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           88 VMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        88 ~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      .+..++.++.+.....++++.+|++++|+..++.++..++++.+|+.++|
T Consensus       359 ~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg  408 (468)
T TIGR00788       359 IIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGV  408 (468)
T ss_pred             HHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHH
Confidence            56677777888888999999999999999999999999999999998765

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.70  E-value=1.7e-07  Score=73.13  Aligned_cols=116  Identities=14%  Similarity=0.157  Sum_probs=86.1

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 043916           15 LSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLS   94 (138)
Q Consensus        15 lg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~   94 (138)
                      +|+++.+.|...+..++..++.+. +.+++.||+++++....+..+...+...+......  .  ....   ..+..++.
T Consensus       235 ~g~s~~~ag~~~~~~~i~~i~g~~-~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~--~--~~~~---~~l~g~g~  306 (393)
T PRK09705        235 IGASAQYSGSLLALMTLGQAAGAL-LMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQ--L--PVLW---AMVCGLGL  306 (393)
T ss_pred             cCCChhhhhHHHHHHHHHHHHHHH-HHHHHHhhccchHHHHHHHHHHHHHHHHHHHccch--H--HHHH---HHHHHHhc
Confidence            689999999999999999999855 77999999999999998887777766554432210  0  1111   12234555


Q ss_pred             HHHHHHHHHHHhhccc-chhhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916           95 VSIITRLFLLQNRAVE-QHQRGAANGLVMTVVSLTKTAGPAVRGA  138 (138)
Q Consensus        95 ~~~~p~~~~li~~~~p-~~~~G~~~G~~~s~~sl~r~igP~i~G~  138 (138)
                      +..+|.......+..+ +|++|+..|+.++...++..+||.+.|+
T Consensus       307 g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~  351 (393)
T PRK09705        307 GGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGV  351 (393)
T ss_pred             cchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666766666666664 6899999999999999999999988763

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.68  E-value=4.5e-07  Score=71.07  Aligned_cols=114  Identities=14%  Similarity=0.123  Sum_probs=86.5

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 043916           18 STKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSI   97 (138)
Q Consensus        18 s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~   97 (138)
                      ++.+.++......+..++. .++.+++.||+|+|+.+..+..+..+.+..+.+..   +. .+. +.....+..++.+..
T Consensus       255 ~~~~~~~~~~~~~i~~ii~-~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~-~~~~~~~~g~~~~~~  328 (437)
T TIGR00792       255 DPELFSYMGSIAIVAGLIG-VLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAG---SN-LPL-ILVLIILAGFGQNFV  328 (437)
T ss_pred             ChHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcc---hh-HHH-HHHHHHHHHHHHHHH
Confidence            5677888888887777777 56789999999999999999888777766554432   11 122 223344556777777


Q ss_pred             HHHHHHHHhhccc-------chhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           98 ITRLFLLQNRAVE-------QHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        98 ~p~~~~li~~~~p-------~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      .+...+++.+.++       ++++|+..|+.+....++.++||.+.|
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g  375 (437)
T TIGR00792       329 TGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVG  375 (437)
T ss_pred             HHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888899888876       456899999999999999999998765

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.67  E-value=4.8e-07  Score=70.55  Aligned_cols=121  Identities=12%  Similarity=-0.038  Sum_probs=87.1

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhh-hHHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLS-GFSLALFINCASVMKN   91 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~l~~~~~~~~   91 (138)
                      ..+|+++.+.|+..........+. ..+.+++.||+++++....+.....++..++....... ....|  +.....+..
T Consensus       244 ~~~g~~~~~~g~~~~~~~~~~~~g-~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~g  320 (406)
T PRK15402        244 SGEQLSSYEYGLLQVPVFGALIAG-NLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLW--LTAGLSLYA  320 (406)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHH--HHHHHHHHH
Confidence            347899999999888777766666 55789999999999999988877766665554432111 11112  234445566


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      .+.+...|........ .++++||+++++.+....++..+||.++|
T Consensus       321 ~g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~  365 (406)
T PRK15402        321 FGIGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSK  365 (406)
T ss_pred             HHHHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777766665543 45699999999999999999999988765

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.67  E-value=2.4e-07  Score=73.89  Aligned_cols=120  Identities=13%  Similarity=0.087  Sum_probs=76.4

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV   92 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~   92 (138)
                      ..+|+|+.+.++......+...+. ..+.+++.||+++|+.................+... ..  .+. +.....+.+.
T Consensus       287 ~~~g~s~~~a~~~~~~~~~~~~ig-~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~-~~--~~~-~~~~~~~~G~  361 (467)
T PRK09556        287 QELGFSKEDAINTFTLFEIGALVG-SLLWGWLSDLANGRRALVACIALALIIFTLGVYQHA-TS--EYM-YLASLFALGF  361 (467)
T ss_pred             HccCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhc-Cc--HHH-HHHHHHHHHH
Confidence            458999999999999888888888 558899999999998766554433332222111110 01  111 1111122121


Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHH-HhhHccCCcC
Q 043916           93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSL-TKTAGPAVRG  137 (138)
Q Consensus        93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl-~r~igP~i~G  137 (138)
                      ..............+..|+|++|+++|+.++...+ +-+++|.+.|
T Consensus       362 ~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G  407 (467)
T PRK09556        362 LVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLG  407 (467)
T ss_pred             HHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHH
Confidence            11111112235667999999999999999999996 7688888765

>PRK09848 glucuronide transporter; Provisional

Probab=98.64  E-value=8.8e-07  Score=70.18  Aligned_cols=119  Identities=17%  Similarity=0.131  Sum_probs=84.0

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916           14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL   93 (138)
Q Consensus        14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~   93 (138)
                      .+|.++.+.++......+...+. .++.+++.||+|+++.+..+..+..++++.+.+...   ...|. +.....+.+++
T Consensus       258 ~~g~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~---~~~~~-~~~~~~l~g~G  332 (448)
T PRK09848        258 VLNDTGLFTVLVLVQNLVGTVAS-APLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSV---WSLPV-ALVALAIASIG  332 (448)
T ss_pred             ecCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCc---hhHHH-HHHHHHHHHHH
Confidence            36766554444333333444444 668899999999999999999888777766654321   11232 23345567888


Q ss_pred             HHHHHHHHHHHHhhcccchh-------hhhhhhHHHHHHHHHhhHccCCcC
Q 043916           94 SVSIITRLFLLQNRAVEQHQ-------RGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        94 ~~~~~p~~~~li~~~~p~~~-------~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      .+...+...++..+.+|++|       +|..+|+.+....++.++|+.+.|
T Consensus       333 ~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g  383 (448)
T PRK09848        333 QGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPA  383 (448)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999998654       588899988888889888887654

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.63  E-value=4.5e-07  Score=68.83  Aligned_cols=123  Identities=11%  Similarity=0.009  Sum_probs=74.8

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV   92 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~   92 (138)
                      ..+|+++.+.++..+..++...+.+. +.+++.||...++...........................+.. .........
T Consensus       245 ~~~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~  322 (379)
T TIGR00881       245 QEKGFSKEKASWAFTLYELGGLVGTL-LAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMD-LICLFALGF  322 (379)
T ss_pred             HHhCCCHHHHHHHHHHHHHHcchhHH-HHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHH-HHHHHHHHH
Confidence            34789999999999999999888854 7789999864333222222111111111111100000001111 112222222


Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      ......+....+.++.+|+|+||+++|+.++...++..++|.+.|
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g  367 (379)
T TIGR00881       323 LVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLG  367 (379)
T ss_pred             HHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHH
Confidence            233334455678899999999999999999999999999998876

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.61  E-value=8.9e-07  Score=69.96  Aligned_cols=122  Identities=15%  Similarity=0.104  Sum_probs=94.8

Q ss_pred             CC-CChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916           15 LS-YSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL   93 (138)
Q Consensus        15 lg-~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~   93 (138)
                      +| .+.+.+|.+++..-+.-+.+ .+..+++.+|+|.++++.++...+.+=+.++.+.+. +....+....+...++++.
T Consensus       237 ~gg~~~~~~g~~~~l~~~aEi~~-f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~-~~~~~~~~~~l~q~lhG~t  314 (400)
T PF03825_consen  237 LGGYSGSTIGILWALGVVAEIPF-FFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSD-PWPFIVALQLLGQLLHGLT  314 (400)
T ss_pred             cccchhhHHHHHHHHHHHHHHHH-HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHhhhhHH
Confidence            44 67778888888877777777 778899999999999999999998887777766522 1001122222334567777


Q ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhHHHHH-HHHHhhHccCCcCC
Q 043916           94 SVSIITRLFLLQNRAVEQHQRGAANGLVMTV-VSLTKTAGPAVRGA  138 (138)
Q Consensus        94 ~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~-~sl~r~igP~i~G~  138 (138)
                      -+..+.+....+++.+|+|.|++++|+.+.. ..+|..+|..++|+
T Consensus       315 f~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~  360 (400)
T PF03825_consen  315 FGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGW  360 (400)
T ss_pred             HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            7888899999999999999999999998775 57899999888874

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.61  E-value=1.4e-07  Score=82.15  Aligned_cols=117  Identities=12%  Similarity=-0.047  Sum_probs=91.7

Q ss_pred             CCCCChh-HHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916           14 GLSYSTK-NVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV   92 (138)
Q Consensus        14 glg~s~~-~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~   92 (138)
                      .+|++.. +.|++++..++..++.+ ++.+++.||+++++.+.++.....+..+++.+...     .+. +.+..++.++
T Consensus       262 ~~g~s~~~~~g~~~~~~~ig~~~g~-~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~g~  334 (1146)
T PRK08633        262 VLGLDNTFQVQYLLAASAIGIGIGS-LLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPS-----LAS-VLVLFFLFGF  334 (1146)
T ss_pred             HhCCCcHHHHHHHHHHHHHHHHHHH-HHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhh-----HHH-HHHHHHHHHH
Confidence            4788988 99999999999988884 57899999999999888887777766665554432     122 2234455566


Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      +.+...+...+++.+.+|+++||+++|+.+....++..+++.+++
T Consensus       335 ~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~  379 (1146)
T PRK08633        335 SAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTT  379 (1146)
T ss_pred             HHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence            777777888999999999999999999999999999887776543

>PRK03699 putative transporter; Provisional

Probab=98.61  E-value=2.5e-07  Score=72.03  Aligned_cols=117  Identities=12%  Similarity=0.131  Sum_probs=84.3

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV   92 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~   92 (138)
                      ..+|+|+.+.|.+.+...+...+.. .+.+++.||+++|+..........+...++....+.    .+.  .....+...
T Consensus       234 ~~~g~s~~~~~~~~~~~~~~~~ig~-~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~G~  306 (394)
T PRK03699        234 KKFGMSLEDAGNLVSNFWMAYMVGM-WIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDP----SHL--LYAILGLGF  306 (394)
T ss_pred             HHcCCChHHhhHHHHHHHHHHHHHH-HHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCc----hHH--HHHHHHHHH
Confidence            3479999999999999998888884 478999999999999887776665554444333221    111  122334455


Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      +.+..+|...+...+..| +++++..|.......++..++|.+.|
T Consensus       307 ~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G  350 (394)
T PRK03699        307 FSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTS  350 (394)
T ss_pred             HHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHH
Confidence            555666776777777665 45678889999999999999998876

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.60  E-value=8.4e-07  Score=69.41  Aligned_cols=118  Identities=14%  Similarity=0.159  Sum_probs=83.3

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV   92 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~   92 (138)
                      ..+|+++++.|..+...++...+.. .+.+++.||.+++..............++....+.     .|.. .....+.++
T Consensus       245 ~~~g~s~~~~g~~~~~~~~~~iig~-~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~-----~~~~-~~~~~l~G~  317 (394)
T PRK10213        245 NLAGFGVDGLTLVLLSFGIASFVGT-SLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSD-----KIVA-TGVAIIWGL  317 (394)
T ss_pred             HhcCCChhHHHHHHHHHHHHHHHHH-HHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhh-----HHHH-HHHHHHHHH
Confidence            4578999999999999999999885 57789999964443333333323332333322211     2322 234455677


Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916           93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRGA  138 (138)
Q Consensus        93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G~  138 (138)
                      +.+...+...+++.+..| |++++..++.++..+++..+||.++|+
T Consensus       318 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~  362 (394)
T PRK10213        318 TFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGY  362 (394)
T ss_pred             HHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            778888888889998887 678899999999999999999998873

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.60  E-value=8.4e-07  Score=68.86  Aligned_cols=118  Identities=14%  Similarity=0.145  Sum_probs=78.9

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV   92 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~   92 (138)
                      ..+|+|+++.++..+..++...+.+. +.+++.||+|+++....+..+..+.+.++......  .  +..+ ....+...
T Consensus       228 ~~~g~s~~~~~~~~~~~~~~~~ig~~-~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~--~--~~~~-~~~~~~~~  301 (382)
T PRK10091        228 FISGFSETSMTFIMMLVGLGMVLGNL-LSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGM--K--TASL-IFAFICCA  301 (382)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHhH-HHheeccccCchhHHHHHHHHHHHHHHHHHHHHhh--H--HHHH-HHHHHHHH
Confidence            44799999999999999999999855 88999999999999998887777766555432221  1  1111 11122223


Q ss_pred             HHHHHHH-HHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916           93 LSVSIIT-RLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRGA  138 (138)
Q Consensus        93 ~~~~~~p-~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G~  138 (138)
                      +.....+ ......++..|+|++|..+  .++...++.++||.++|+
T Consensus       302 g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~  346 (382)
T PRK10091        302 GLFALSAPLQILLLQNAKGGELLGAAG--GQIAFNLGSAIGAYCGGM  346 (382)
T ss_pred             HHHhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHHHHHHHHHHhHH
Confidence            3222223 3334555555667777664  467789999999998873

>PRK09952 shikimate transporter; Provisional

Probab=98.59  E-value=1.2e-06  Score=69.47  Aligned_cols=122  Identities=7%  Similarity=0.044  Sum_probs=80.1

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV   92 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~   92 (138)
                      ..+|++.++........+....+. ..+.+++.||+|+||.+..+..........+-.... .....+. +.....+...
T Consensus       279 ~~~g~s~~~~~~~~~~~g~~~~i~-~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~l~~~  355 (438)
T PRK09952        279 QNLGLPRELFLNIGLLVGGLSCLT-IPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALE-AQSIFWI-VFFSIMLANI  355 (438)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH-cCChHHH-HHHHHHHHHH
Confidence            457888887666666666666666 457899999999999988776654433221111100 0111122 1223334455


Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHH-HHhhHccCCcC
Q 043916           93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVS-LTKTAGPAVRG  137 (138)
Q Consensus        93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~s-l~r~igP~i~G  137 (138)
                      +.+...+...+++.+..|.+.|++.+|+...... ++..++|.+.|
T Consensus       356 ~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g  401 (438)
T PRK09952        356 AHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAA  401 (438)
T ss_pred             HHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            6666677788999999999999999999776654 78888887654

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.59  E-value=7e-07  Score=72.00  Aligned_cols=117  Identities=12%  Similarity=0.085  Sum_probs=83.6

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhh-----hhHHH-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 043916           14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERII-----GPIII-TRIAGVLSITLLTSYTYIAMLSGFSLALFINCAS   87 (138)
Q Consensus        14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~-----g~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~   87 (138)
                      ..|.|.+++|.. +..+... +.+ ++..++.||+     |+||. +..+..........+.+.....+  .|. +....
T Consensus        41 ~~g~~~~~ig~~-~~~~~~~-~~~-~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~--l~~-l~~~~  114 (491)
T PRK11010         41 VENIDLKTIGFF-SLVGQAY-VFK-FLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQ--LRW-LAALA  114 (491)
T ss_pred             hCCCCHHHHHHH-HHHHHHH-HHH-HHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcch--HHH-HHHHH
Confidence            348999999996 5555554 354 4778899999     98885 44666666566555544321111  122 22344


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCc
Q 043916           88 VMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVR  136 (138)
Q Consensus        88 ~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~  136 (138)
                      .+...+.+...+...+++.+..|+||||+.+|+.+....+|..++|.++
T Consensus       115 ~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~  163 (491)
T PRK11010        115 VVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLA  163 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556677778888999999999999999999999999999999988654

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.58  E-value=4.9e-07  Score=73.22  Aligned_cols=117  Identities=9%  Similarity=0.030  Sum_probs=99.9

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV   92 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~   92 (138)
                      .++++...|.|.+-+.+-+.++++|. +...+.||++..+......+.|.+...+.-..++.     + .+...+++.++
T Consensus        74 edl~~~~~~l~~~~t~F~v~Yii~~~-p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~-----~-~~ialr~llGl  146 (495)
T KOG2533|consen   74 EDLKLVGNQLGVLDTVFYVGYIIGQF-PSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSF-----P-GLIALRFLLGL  146 (495)
T ss_pred             cccchhhhhhhhHHHHHHHHHHHHHh-hHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhh-----H-HHHHHHHHHHH
Confidence            46788999999999999999999988 88999999998888887777777766555444332     2 34567888899


Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCc
Q 043916           93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVR  136 (138)
Q Consensus        93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~  136 (138)
                      .++..+|....++.++..++|||+.+|++.+.+++|.++|.+++
T Consensus       147 ~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA  190 (495)
T KOG2533|consen  147 FESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIA  190 (495)
T ss_pred             HhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHH
Confidence            99999999999999999999999999999999999999988765

>PRK10054 putative transporter; Provisional

Probab=98.58  E-value=2.6e-07  Score=72.35  Aligned_cols=118  Identities=12%  Similarity=0.077  Sum_probs=90.6

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916           14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL   93 (138)
Q Consensus        14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~   93 (138)
                      +.+.+...+|..+..++......|. ..+++.||.++|+....+..+..+.+..+.+...  +  .|. +.....+..++
T Consensus       238 ~~~~~~~~~g~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~--~~~-~~~~~~~~~~g  311 (395)
T PRK10054        238 DSDFAEKVVAVVLPVNAAMVVSLQY-SVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGN--S--LLL-WGMSAAVFTVG  311 (395)
T ss_pred             ccchHHHHHHHHHHhhhhheeeehh-HHHHHHccCCchhHHHHHHHHHHHHHHHHHHcch--H--HHH-HHHHHHHHHHH
Confidence            4677888899999999988888864 5678889999999998888777777665544211  1  122 22345566778


Q ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916           94 SVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRGA  138 (138)
Q Consensus        94 ~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G~  138 (138)
                      .....|.....+.+.+|++.||+..|.. +...+|.++||.++|+
T Consensus       312 ~~~~~p~~~~~~~~~~p~~~~~~~~~~~-~~~~~G~~~Gp~~~G~  355 (395)
T PRK10054        312 EIIYAPGEYMLIDHIAPPGMKASYFSAQ-SLGWLGAAINPLVSGV  355 (395)
T ss_pred             HHHHHhhHHHHHHHhCCcccceehHhHH-HHHHHHHHHHHHHHHH
Confidence            8888898999999999999999999864 4677899999998763

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.55  E-value=9.2e-07  Score=68.81  Aligned_cols=117  Identities=10%  Similarity=0.050  Sum_probs=82.6

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 043916           15 LSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLS   94 (138)
Q Consensus        15 lg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~   94 (138)
                      .+.+.+++|...+...+...+.+. ..+++.||+|+|+...++..+..+.+.+.+...+.     |.. .....+.+++.
T Consensus       249 ~~~~~~~~g~~~~~~~i~~~~~~~-~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~-----~~~-~~~~~l~g~~~  321 (396)
T TIGR00882       249 PQQGTRVFGYVTTMGELLNALIMF-CAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTA-----LEV-VILKMLHAFEV  321 (396)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCCh-----HHH-HHHHHHHHHHH
Confidence            356778899999999888888854 77999999999999999888888877665543321     222 22333444443


Q ss_pred             HHHHHHHHHHHhhcccchhhhhhhhH-HHHHHHHHhhHccCCcCC
Q 043916           95 VSIITRLFLLQNRAVEQHQRGAANGL-VMTVVSLTKTAGPAVRGA  138 (138)
Q Consensus        95 ~~~~p~~~~li~~~~p~~~~G~~~G~-~~s~~sl~r~igP~i~G~  138 (138)
                      ...........++..|++.+++.++. .+....++..++|.++|+
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~  366 (396)
T TIGR00882       322 PFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGN  366 (396)
T ss_pred             HHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHH
Confidence            33333344455566677777887776 678899999999998874

>PRK15075 citrate-proton symporter; Provisional

Probab=98.55  E-value=4.3e-07  Score=71.70  Aligned_cols=121  Identities=16%  Similarity=0.082  Sum_probs=77.6

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHH-HHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLT-SYTYIAMLSGFSLALFINCASVMKN   91 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~l~~~~~~~~   91 (138)
                      +.+|++..+.++.....++...+. ..+.+++.||+|+|+.+..+......... .......  ....+. +.....+..
T Consensus       267 ~~~g~~~~~~~~~~~~~~~~~~~~-~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~  342 (434)
T PRK15075        267 TVLHLSAADSLLVTLCVGVSNFIW-LPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVA--APSFAR-MLAVELWLS  342 (434)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHc--CCchHH-HHHHHHHHH
Confidence            347899999999988888888877 45789999999999988776544322111 1101101  010111 111122223


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHH-HhhHccCCcC
Q 043916           92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSL-TKTAGPAVRG  137 (138)
Q Consensus        92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl-~r~igP~i~G  137 (138)
                      ++.+...+.....+.+..|+|+||+.+|+.++.... +..++|.+.|
T Consensus       343 ~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g  389 (434)
T PRK15075        343 FLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAIST  389 (434)
T ss_pred             HHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHH
Confidence            444555566678889999999999999997765554 4667887654

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.55  E-value=1.3e-06  Score=69.24  Aligned_cols=119  Identities=12%  Similarity=-0.064  Sum_probs=83.7

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV   92 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~   92 (138)
                      ..+|++..+.++.....++...+. ..+.+++.||+|+|+++..+..+..+.+..+...........+..  ..+.+...
T Consensus       299 ~~~g~~~~~~~~~~~~~~~~~~i~-~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~--~~~~~~~~  375 (479)
T PRK10077        299 KTLGASTDIALLQTIIVGVINLTF-TVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVAL--LSMLFYVA  375 (479)
T ss_pred             HHcCCCCchHHHHHHHHHHHHHHH-HHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHH--HHHHHHHH
Confidence            456777777777777888888887 457889999999999999999888887766653321110011111  12222222


Q ss_pred             HHHH-HHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccC
Q 043916           93 LSVS-IITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPA  134 (138)
Q Consensus        93 ~~~~-~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~  134 (138)
                      +... ..|....++++..|+++||+++|+.+....++..++|.
T Consensus       376 ~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~  418 (479)
T PRK10077        376 AFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSW  418 (479)
T ss_pred             HHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222 23677899999999999999999999999999988743

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=98.54  E-value=7.9e-07  Score=69.05  Aligned_cols=116  Identities=17%  Similarity=0.098  Sum_probs=79.4

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHH-HHHHHHh-hhhhhhhHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSI-TLLTSYT-YIAMLSGFSLALFINCASVMK   90 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~-~~~~~~p-~~~~~~~~~~~~~l~~~~~~~   90 (138)
                      .++|+|..|+|++.+.+.+...+.|. +..++.||+|++...+....... +..+.+. ..++     .|. +...+.+.
T Consensus        32 ~~~g~s~~~ig~~~s~~~~~~~~~~~-~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~-l~~~~~l~  104 (382)
T TIGR00902        32 KGIGLGEEMIGLLIGAALIARFAGGL-FFAPLIKDANHIIIALRLLALASAIFAAAFSAGAHN-----AWL-LFIAIGLF  104 (382)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhhh-----HHH-HHHHHHHH
Confidence            35899999999999999999999976 66788899986443322221111 1111111 1111     233 22345556


Q ss_pred             HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      ..+.+...|...++..+.  +++||+..|......++|-++||.++|
T Consensus       105 ~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g  149 (382)
T TIGR00902       105 ALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFG  149 (382)
T ss_pred             HHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHH
Confidence            666666778888887653  578999999999999999999998765

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.54  E-value=2.5e-06  Score=66.64  Aligned_cols=120  Identities=18%  Similarity=0.145  Sum_probs=71.2

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH--
Q 043916           12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVM--   89 (138)
Q Consensus        12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~--   89 (138)
                      ...+|++++++|+++...+....+....+.+++.||+|++|....+.....+..+.+.......+. .|. +.....+  
T Consensus       237 ~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~-~~~-~~~~~~~~~  314 (402)
T PRK11902        237 IRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKH-LWT-MALAIGIEN  314 (402)
T ss_pred             HHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCc-HHH-HHHHHHHHH
Confidence            345799999999999887776444446788999999999998877666555443322211111111 122 1122222  


Q ss_pred             --HHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           90 --KNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        90 --~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                        .....+...+..+.++++..|.+++    ++.++..++++.+++.++|
T Consensus       315 ~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G  360 (402)
T PRK11902        315 LCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSG  360 (402)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHH
Confidence              2333444455566666666665554    5555566777765555554

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.53  E-value=4.6e-07  Score=70.32  Aligned_cols=114  Identities=20%  Similarity=0.190  Sum_probs=79.2

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhH----HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPI----IITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASV   88 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~----~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~   88 (138)
                      .++|+|..++|+..+.+.+...+.|. +.+++.||+|++    +....+.....   ..+....    ...|.. ...+.
T Consensus        32 ~~~g~s~~~iG~~~~~~~l~~~l~~~-~~g~l~dr~g~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~l-~i~~~  102 (382)
T PRK11128         32 KGQGYTPETIGLLLGAGLVARFLGSL-LIAPRVKDPSQLIPALRLLALLTLLFA---VAFWFGA----HSFWLL-FVAIG  102 (382)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHhhhH-HHHHHHhhhcchHHHHHHHHHHHHHHH---HHHHHhc----ccHHHH-HHHHH
Confidence            34799999999999999999999966 667889999984    33322222111   1111111    112433 23455


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           89 MKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        89 ~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      +...+.+...|...++..+.  +++|++.+|..+...+++-++||.++|
T Consensus       103 l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg  149 (382)
T PRK11128        103 LFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTG  149 (382)
T ss_pred             HHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHH
Confidence            56667777778777777765  467899999999999999999999886

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.53  E-value=1.6e-06  Score=70.22  Aligned_cols=107  Identities=14%  Similarity=0.051  Sum_probs=95.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043916           20 KNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIIT   99 (138)
Q Consensus        20 ~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p   99 (138)
                      ++.+++.+...+...+.+. +.+++.|++|+|+.+.++...+.++.++..++.+      +..+...+++.+++.+...-
T Consensus        89 ~~~s~~~s~~~lga~~g~l-~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~------~~~l~~GR~l~G~g~G~~~~  161 (513)
T KOG0254|consen   89 VRQGLLTSILNLGALVGSL-LAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPS------WYQLIVGRILTGLGVGGASV  161 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh------HHHHHHHHHHhccchhhhhh
Confidence            5779999999999999955 7789999999999999999999999998887764      23566889999999999988


Q ss_pred             HHHHHHhhcccchhhhhhhhHHHHHHHHHhhHcc
Q 043916          100 RLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGP  133 (138)
Q Consensus       100 ~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP  133 (138)
                      .....+++.+|++.||..+...|....+|-.+|-
T Consensus       162 ~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~  195 (513)
T KOG0254|consen  162 LAPVYISEIAPAHIRGTLVSLYQLFITIGILLGY  195 (513)
T ss_pred             cchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999988877763

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.52  E-value=2e-07  Score=81.51  Aligned_cols=123  Identities=11%  Similarity=-0.025  Sum_probs=89.9

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhh---------------hhhH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAM---------------LSGF   77 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~---------------~~~~   77 (138)
                      ..+|.++.+.|++++..++..++.+. +.+++.|+..+++....+..+..+..+.+++...               ....
T Consensus       254 ~~~g~~~~~~g~~~~~~~~g~~ig~~-~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  332 (1140)
T PRK06814        254 ETLGGDENVATLFLAVFSVGVAVGSF-LASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKR  332 (1140)
T ss_pred             HHcCCchHHHHHHHHHHHHHHHHHHH-HHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhccc
Confidence            34899999999999999999999855 7788888877777666555555444443333200               0001


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           78 SLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        78 ~~~~~l~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      ..|.. .+..++.+++.+...+...+++.+.+|+++||+++|+.+...+++..+||.++|
T Consensus       333 ~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g  391 (1140)
T PRK06814        333 HGWRI-LIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILA  391 (1140)
T ss_pred             ccHHH-HHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHH
Confidence            11322 234445567788888889999999999999999999999999999999998754

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.51  E-value=4e-06  Score=64.24  Aligned_cols=119  Identities=15%  Similarity=0.085  Sum_probs=83.2

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV   92 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~   92 (138)
                      ..+|+++++.|++....++...+.+. +.+++.||+++|+....+.........++......... .+..+.....+...
T Consensus       235 ~~~g~~~~~~g~~~~~~~~~~~~~~~-~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~  312 (385)
T TIGR00710       235 DIMGVSPSVFGLLFALNIIAMIFGGF-LNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLG-SWAMIIGPMMFVGI  312 (385)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHH
Confidence            35789999999999999998888854 78999999999999988877777666555433211101 12222233445566


Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHH-HhhHccC
Q 043916           93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSL-TKTAGPA  134 (138)
Q Consensus        93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl-~r~igP~  134 (138)
                      +.+...+.......+..| +++|+++++.++.... +-..+|.
T Consensus       313 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~  354 (385)
T TIGR00710       313 GNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYL  354 (385)
T ss_pred             HHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHH
Confidence            677777777777777765 6899999998887765 4444443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00897 2A0118 polyol permease family

Probab=98.49  E-value=2.6e-06  Score=66.62  Aligned_cols=121  Identities=18%  Similarity=0.198  Sum_probs=75.4

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHH-HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITR-IAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN   91 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~   91 (138)
                      .++|+|+.+.+...+..++...+. ....+++.||+++|+... .+.....+....+.+.........+... ....+..
T Consensus       250 ~~~g~s~~~~~~~~~~~~~~~~ig-~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~G  327 (402)
T TIGR00897       250 AELGFSTSEWLQIWGTFFFTNIVF-NVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVAL-IIAIALG  327 (402)
T ss_pred             HHcCCChhHHHHHHHHHHHHHHHH-HHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHH-HHHHHHH
Confidence            347899999999999999988888 457799999999888764 2222222222222211110000112211 1222223


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      .+.+...| ....+.+. +|++||++.|+.++...++..+||.++|
T Consensus       328 ~~~~~~~~-~~~~~~~~-~~~~~g~~~g~~~~~~~lg~~~gp~i~g  371 (402)
T TIGR00897       328 IFLAGYVP-LAAVFPTL-APKHKGAAMSVLNLSAGLSAFLAPAIAV  371 (402)
T ss_pred             HHHHHHHH-HHHHHHhh-CcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334 34455554 4568999999999999999999998775

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00898 2A0119 cation transport protein

Probab=98.46  E-value=2.5e-06  Score=68.31  Aligned_cols=106  Identities=14%  Similarity=0.075  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043916           27 AISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITRLFLLQN  106 (138)
Q Consensus        27 ~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~li~  106 (138)
                      ...++..+.. .++..++.||+|+|+....+..+..+..+++.+.....   .+.. .....+...+....++....+.+
T Consensus       362 ~~~~~~~i~~-~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~  436 (505)
T TIGR00898       362 FISGLVELPA-KLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDL---YFLR-TALAVLGKFGITSAFQMVYLYTA  436 (505)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCc---hHHH-HHHHHHHHHHHHHHHHHHHHHhc
Confidence            3445555554 44668899999999999998888777766665543211   1111 12223334455667788889999


Q ss_pred             hcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916          107 RAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus       107 ~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      +..|++.|++++|+.++...++.+++|.+.+
T Consensus       437 e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~  467 (505)
T TIGR00898       437 ELYPTVVRNLGVGVCSTMARVGSIISPFLVY  467 (505)
T ss_pred             ccccHHHHhhhHhHHHHHHHHHHHHHhHHHH
Confidence            9999999999999999999999999998653

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.43  E-value=3.5e-06  Score=68.06  Aligned_cols=124  Identities=17%  Similarity=0.140  Sum_probs=92.9

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhH--HHHHHHHHHHHHHHH--HHhhhhhhhhH-HHHHHHHHH
Q 043916           12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPI--IITRIAGVLSITLLT--SYTYIAMLSGF-SLALFINCA   86 (138)
Q Consensus        12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~--~~~~~~~~~~~~~~~--~~p~~~~~~~~-~~~~~l~~~   86 (138)
                      .+.+|+|..|+..+.-...+..++. .++++++.||+|.|  +++..++..+.+..+  ++.+.....+. ..|.. ...
T Consensus       309 ~~~lg~s~~~l~~~~l~~~i~a~~G-a~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f-~~~  386 (477)
T PF11700_consen  309 TEVLGMSTTQLIVFGLVVQIVAIIG-ALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEF-WVL  386 (477)
T ss_pred             HHhcCcCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHH-HHH
Confidence            3469999999999999988888888 77999999999999  888888877643322  22111111111 12322 223


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           87 SVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        87 ~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      .++.++..+...+...++.++..|+++.++..|+.....-.+-.+||++-|
T Consensus       387 a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g  437 (477)
T PF11700_consen  387 AVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFG  437 (477)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            335567778888999999999999999999999999999999999998754

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.41  E-value=3.4e-06  Score=65.95  Aligned_cols=115  Identities=6%  Similarity=-0.077  Sum_probs=81.9

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916           14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL   93 (138)
Q Consensus        14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~   93 (138)
                      .+|.|+.+.|++.+..++...+. ....+++.||.++++....+.. ......++++.+.     .|. ......+.+++
T Consensus       235 ~lg~s~~~~G~~~~~~~~g~i~g-~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~-----~~~-~~~~~~~~G~~  306 (393)
T PRK11195        235 ALGITLNQPAYLQAVVAIGIAVG-AGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHS-----LLP-AYPLLILIGAL  306 (393)
T ss_pred             HcCCChhHHHHHHHHHHHHHHHH-HHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhH-----HHH-HHHHHHHHHHh
Confidence            47999999999999999988888 4467899999999888877754 3333333333221     122 22334455666


Q ss_pred             HHHHHHHHHHHHhhcccchh-hhhhhhHHHHHHHHHhhHccCCc
Q 043916           94 SVSIITRLFLLQNRAVEQHQ-RGAANGLVMTVVSLTKTAGPAVR  136 (138)
Q Consensus        94 ~~~~~p~~~~li~~~~p~~~-~G~~~G~~~s~~sl~r~igP~i~  136 (138)
                      .+...+..++.+.+..|+|. +|++.++.+....++..++..+.
T Consensus       307 ~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~  350 (393)
T PRK11195        307 GGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLY  350 (393)
T ss_pred             hhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHH
Confidence            66666777788877666554 79999999999999988887654

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.41  E-value=1.2e-05  Score=61.70  Aligned_cols=119  Identities=14%  Similarity=0.128  Sum_probs=74.3

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916           14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL   93 (138)
Q Consensus        14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~   93 (138)
                      .+|+++++.|+.....++...+.+. +.+++.||+|+|+.+..+........+..-..... +...|... ....+...+
T Consensus       224 ~~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~  300 (377)
T PRK11102        224 LNGVSPQNFGYYFALNIVFLFVMTI-INSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALL-DLGFWALV-VGVAAFVGC  300 (377)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHH-HHHHHHHHH
Confidence            4789999999999999999999854 77999999999999988876543322111111111 11112211 122222233


Q ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhHHHHH-HHHHhhHccCCc
Q 043916           94 SVSIITRLFLLQNRAVEQHQRGAANGLVMTV-VSLTKTAGPAVR  136 (138)
Q Consensus        94 ~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~-~sl~r~igP~i~  136 (138)
                      .+...+.....+.+..| |++|+++++.++. .+++..+|+.++
T Consensus       301 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~  343 (377)
T PRK11102        301 VSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLS  343 (377)
T ss_pred             HHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445556666555 8999999998765 346666666554

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.40  E-value=4.3e-06  Score=65.80  Aligned_cols=121  Identities=8%  Similarity=-0.150  Sum_probs=97.1

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV   92 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~   92 (138)
                      .-++.+..|.+.+...+=..+.+. ....+++.||+|.|+-+..++.+++++..++-.+....   .|.......++...
T Consensus        41 ~~f~ls~~~a~liqfaff~gYf~~-~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~---~y~~FL~~lFila~  116 (422)
T COG0738          41 EVFDLTYFEASLIQFAFFGGYFIM-SLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSK---SYGFFLVALFILAS  116 (422)
T ss_pred             HHhCccHHHHHHHHHHHHHHHHHH-hccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhh---hHHHHHHHHHHHHh
Confidence            458999999999999888888877 66889999999999999999999999876553232221   23333344556666


Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      |-+..-.+...+++...|+|+-.+-+.+.|+.+++|.++||++++
T Consensus       117 Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~  161 (422)
T COG0738         117 GIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGS  161 (422)
T ss_pred             hhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            777777788888999999988888999999999999999999875

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.39  E-value=5.4e-06  Score=65.25  Aligned_cols=117  Identities=11%  Similarity=0.123  Sum_probs=73.6

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHH-HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916           14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIIT-RIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV   92 (138)
Q Consensus        14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~   92 (138)
                      +.|.++.+.+......++...+. ..+.+++.||+++|+.. ........+.+.+....   .+.  ...+ ....+...
T Consensus       273 ~~~~s~~~~~~~~~~~~l~~~~g-~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~-~~~~~~~~  345 (412)
T TIGR02332       273 NQGSSNIMIGLLAAIPQFCTIFG-MIWWSRHSDRLKERKHHTALPYLFAAAGWLLASAT---DHN--LIQL-LGIIMASM  345 (412)
T ss_pred             CCCCcHHHhHHHhhHHHHHHHHH-HHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhc---CCH--HHHH-HHHHHHHH
Confidence            35778899999999999998888 56889999999977743 33333333322211111   111  1111 11111122


Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      +.....+.......+..|+|+||+++|+.+....++.+++|.+.|
T Consensus       346 g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g  390 (412)
T TIGR02332       346 GSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIG  390 (412)
T ss_pred             HhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence            222222333344456788999999999999999999999998776

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.39  E-value=4.1e-06  Score=66.24  Aligned_cols=117  Identities=9%  Similarity=0.006  Sum_probs=71.7

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhh--hhHHHHH----HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERII--GPIIITR----IAGVLSITLLTSYTYIAMLSGFSLALFINCA   86 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~--g~~~~~~----~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~   86 (138)
                      ..+|+|+.+.+...+..++...+. -++.+++.||+  ++|+...    .+.....+.+...|..+     ..+..  ..
T Consensus       272 ~~~g~s~~~a~~~~~~~~~~~~~g-~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~--~~  343 (434)
T PRK11663        272 ETLGVDLVTANSAVSMFELGGFIG-ALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFAS-----YVMQA--AC  343 (434)
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHH-HHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHccccc-----HHHHH--HH
Confidence            447999999999999999999888 45789999998  3332221    12222222222223211     11111  11


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           87 SVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        87 ~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      ......+...........+.+..|+++||+++|+.++...++.+++|.+.|
T Consensus       344 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g  394 (434)
T PRK11663        344 FFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLA  394 (434)
T ss_pred             HHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHH
Confidence            111111111111123445678888999999999999999999999999876

>PRK11043 putative transporter; Provisional

Probab=98.39  E-value=8.9e-06  Score=63.24  Aligned_cols=121  Identities=14%  Similarity=0.005  Sum_probs=79.1

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916           14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL   93 (138)
Q Consensus        14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~   93 (138)
                      ..|+++.++|+.....++...+. ....+++.||+++++..+.......+....+-..........+. +.....+...+
T Consensus       232 ~~g~s~~~~g~~~~~~~~~~~~g-~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  309 (401)
T PRK11043        232 QMGYSPADIGLSYVPQTIAFLVG-GYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVP-LLIPFCVMAAA  309 (401)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHH-HHHHHHHHHHH
Confidence            47899999999888877777776 44678999999999987766555444433222111111111121 22233344566


Q ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           94 SVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        94 ~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      .+..+|.......+..| |++|+++|+.++....+-..+|.+.|
T Consensus       310 ~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g  352 (401)
T PRK11043        310 NGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVS  352 (401)
T ss_pred             HHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHH
Confidence            67777877777666665 68999999999988877777766544

>TIGR00889 2A0110 nucleoside transporter

Probab=98.38  E-value=2.7e-06  Score=67.22  Aligned_cols=112  Identities=12%  Similarity=0.041  Sum_probs=76.0

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhh-HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGP-IIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN   91 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~   91 (138)
                      +++|+|.+|+|++.+...+...+.|. +.+++.||+|+ |+++..+.....+.+.+.++.++.     |. +...+.+..
T Consensus        31 ~~~g~s~~~iGl~~a~~~~~~~i~~~-~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~l~~  103 (418)
T TIGR00889        31 KTLHFSGAEIGWVYSSTGIAAILMPI-LVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTP-----AG-MFPVLLANS  103 (418)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCH-----HH-HHHHHHHHH
Confidence            45899999999999999999999987 77999999964 778888888887777776655432     11 122334445


Q ss_pred             HHHHHHHHHHHHHHhh--------cccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           92 VLSVSIITRLFLLQNR--------AVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        92 ~~~~~~~p~~~~li~~--------~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      ++.+...|..+++...        ...+..|.+..|      ++|-++||.++|
T Consensus       104 ~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g  151 (418)
T TIGR00889       104 LAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVS  151 (418)
T ss_pred             HHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHH
Confidence            5555556655555321        123345666665      366777776654

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR01272 gluP glucose/galactose transporter

Probab=98.38  E-value=8e-06  Score=62.26  Aligned_cols=114  Identities=11%  Similarity=0.130  Sum_probs=85.1

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916           14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL   93 (138)
Q Consensus        14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~   93 (138)
                      .+|+++++.+...+.+-....+. -++.+++.||+|++|..+++..+..+..++....+.   .  +. . ....+...+
T Consensus       172 ~~g~s~~~a~~~~s~~~~~~~iG-r~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~---~--~~-~-~~~~l~g~~  243 (310)
T TIGR01272       172 ALGLPEDQAAHFTAYTWGGAMVG-RFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHG---Y--VA-M-WFVLALGLF  243 (310)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCC---H--HH-H-HHHHHHHHH
Confidence            47899999999999999988887 668899999999999999888777766544443221   1  11 1 122355788


Q ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           94 SVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        94 ~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      .+..+|...++..+..|+ +.+++.++. ....+|.++.|.+-|
T Consensus       244 ~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G  285 (310)
T TIGR01272       244 NSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQG  285 (310)
T ss_pred             HHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHH
Confidence            899999999999888875 355666774 677888999997654

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=98.37  E-value=8.8e-06  Score=65.40  Aligned_cols=120  Identities=14%  Similarity=0.125  Sum_probs=75.3

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHH-HHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLL-TSYTYIAMLSGFSLALFINCASVMKN   91 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~~   91 (138)
                      ..+|++..+.++......+...+. ..+.+++.||+|+|+.+..+........ ..+.....  +.  ...+.....+..
T Consensus       279 ~~~g~s~~~~~~~~~~~~~~~~~~-~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~g  353 (490)
T PRK10642        279 HNLHYSEDHGVLIIIAIMIGMLFV-QPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINS--NV--IGLIFAGLLMLA  353 (490)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhC--CC--HHHHHHHHHHHH
Confidence            357888888887777776767766 4467999999999998887765433221 11111111  11  111222333333


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      ++.+...+.....+.+..|++.||+..|........+..++|.+.|
T Consensus       354 ~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g  399 (490)
T PRK10642        354 VILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAA  399 (490)
T ss_pred             HHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444445556677778899999999999866666666677776544

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.35  E-value=3.7e-06  Score=66.27  Aligned_cols=119  Identities=20%  Similarity=0.132  Sum_probs=91.8

Q ss_pred             CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 043916            9 LRKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASV   88 (138)
Q Consensus         9 ~~~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~   88 (138)
                      |+..+..|+|.+++++++..+|+...+.+ .+.+++.|| +.++.......+....++.+++....    .+..+ ....
T Consensus       236 P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn-~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~----~~~~~-~~~~  308 (394)
T COG2814         236 PFLESVAGFSVSAVSLVLLAFGIAGFIGN-LLGGRLADR-GPRRALIAALLLLALALLALTFTGAS----PALAL-ALLF  308 (394)
T ss_pred             HHHHHccCCCHhHHHHHHHHHHHHHHHHH-HHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcch----HHHHH-HHHH
Confidence            34456678999999999999999999995 488999999 99999999988888888877765442    13222 1222


Q ss_pred             HHHHHHHHHHHHHHHHHhhccc--chhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           89 MKNVLSVSIITRLFLLQNRAVE--QHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        89 ~~~~~~~~~~p~~~~li~~~~p--~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      +   .+....|..+.+..+.++  ||+++.+.+++++...+|.++|-.+||
T Consensus       309 ~---wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG  356 (394)
T COG2814         309 L---WGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGG  356 (394)
T ss_pred             H---HHHHhhhhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2   333444666666666666  699999999999999999999988876

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.35  E-value=4.5e-06  Score=67.15  Aligned_cols=114  Identities=10%  Similarity=0.040  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhh---hhhHhh-hhhHHHH--HHHHHHHHHHHHHHhhhhhhhh----HHHHHHHHHHHHHHH
Q 043916           22 VGQVLAISGFNLLFSQLTLY---PYVERI-IGPIIIT--RIAGVLSITLLTSYTYIAMLSG----FSLALFINCASVMKN   91 (138)
Q Consensus        22 ig~~~~~~g~~~~~~q~~~~---~~l~~~-~g~~~~~--~~~~~~~~~~~~~~p~~~~~~~----~~~~~~l~~~~~~~~   91 (138)
                      .+++.+.+++..++.|..+.   +++.|| .+++...  .+|..+..+++..+.+.....+    ...|. ++...++.+
T Consensus       314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~-~i~~~~~~~  392 (475)
T TIGR00924       314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWF-MVLIYLFQT  392 (475)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHH-HHHHHHHHH
Confidence            78999999999999986543   355554 3333444  5677777777766554211110    11232 345667889


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCc
Q 043916           92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVR  136 (138)
Q Consensus        92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~  136 (138)
                      +++.+..|...+++++.+|++.||+.+|+++...++|+.+|+.+.
T Consensus       393 ~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~  437 (475)
T TIGR00924       393 LGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLA  437 (475)
T ss_pred             HHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999987654

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.35  E-value=4.6e-06  Score=66.27  Aligned_cols=119  Identities=11%  Similarity=0.019  Sum_probs=69.0

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhh--hHHHH-HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916           14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIG--PIIIT-RIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK   90 (138)
Q Consensus        14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g--~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~   90 (138)
                      ..|++..+.++.....++...+. .++.+++.||++  +++.. .....+..+....+....  .+. .+... ......
T Consensus       283 ~~g~s~~~~~~~~~~~~~~~~~g-~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~--~~~-~~~~~-~~~~~~  357 (452)
T PRK11273        283 VKHFALDKSSWAYFLYEYAGIPG-TLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNP--AGN-PTVDM-ACMIVI  357 (452)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhc--ccC-hHHHH-HHHHHH
Confidence            37888999999998888888877 447899999994  44322 222222222222221110  011 11111 111111


Q ss_pred             HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhH-ccCCcC
Q 043916           91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTA-GPAVRG  137 (138)
Q Consensus        91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~i-gP~i~G  137 (138)
                      ........+.......+.+|+++||+++|+.+....++..+ ||.+.|
T Consensus       358 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g  405 (452)
T PRK11273        358 GFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG  405 (452)
T ss_pred             HHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHH
Confidence            11111112233456778999999999999999888887655 788765

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.34  E-value=8.6e-06  Score=63.15  Aligned_cols=113  Identities=9%  Similarity=0.058  Sum_probs=71.2

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV   92 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~   92 (138)
                      ..+|+++.+.|...+..++..++.+ .+.+++.||+|+|+.+..+.....++...+.+....   . +..  ....+...
T Consensus       232 ~~~g~~~~~~~~~~~~~~~~~i~~~-~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~--~~~~l~~~  304 (392)
T PRK10473        232 EQMGFSRGEYAIIMALTAGVSMTVS-FSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSH---A-VSL--FGITLICA  304 (392)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHH--HHHHHHHH
Confidence            3578999999999999999999985 577999999999999999888777766655443221   1 111  11112222


Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      +.+...+.  ....+..|.++|+   |...+..++++.+||.+++
T Consensus       305 g~~~~~~~--~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~  344 (392)
T PRK10473        305 GFSVGFGV--AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWI  344 (392)
T ss_pred             HHHHHhHH--HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHH
Confidence            33333322  2223344554443   5555666677777766554

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.33  E-value=1.7e-06  Score=67.78  Aligned_cols=119  Identities=9%  Similarity=-0.007  Sum_probs=80.1

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhh----hhhHH-HHHHHHHHHHHHHHHHhhhhhhhh--HHHHHHHH
Q 043916           12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERI----IGPII-ITRIAGVLSITLLTSYTYIAMLSG--FSLALFIN   84 (138)
Q Consensus        12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~----~g~~~-~~~~~~~~~~~~~~~~p~~~~~~~--~~~~~~l~   84 (138)
                      .+.+|+|+.++|++++...+..++.|. +.+++.||    +|+|| .+..+...+.+.++++.+......  ...|.  .
T Consensus        27 ~~~~g~s~~~~g~i~~~~~i~~~i~~p-~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~  103 (437)
T TIGR00792        27 TDVLGLSAAFVGTLFLVARILDAITDP-IMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYA--Y  103 (437)
T ss_pred             HHccCCCHHHHHHHHHHHHHHHHhccc-hheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHH--H
Confidence            456899999999999999999999976 77888887    66655 455666666666655544332211  11122  2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcc-cchhhhhhhhHHHHHHHHHhhHcc
Q 043916           85 CASVMKNVLSVSIITRLFLLQNRAV-EQHQRGAANGLVMTVVSLTKTAGP  133 (138)
Q Consensus        85 ~~~~~~~~~~~~~~p~~~~li~~~~-p~~~~G~~~G~~~s~~sl~r~igP  133 (138)
                      ....+..++.++..+...++..+.. +++||++.++..+....+|..+++
T Consensus       104 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~  153 (437)
T TIGR00792       104 ITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVA  153 (437)
T ss_pred             HHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2333445555555555677777766 469999999998887777765543

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.32  E-value=1.1e-05  Score=65.27  Aligned_cols=110  Identities=13%  Similarity=0.051  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHHHHHHh---hhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhh---H-HHHHHHHHHHHHHHHHH
Q 043916           22 VGQVLAISGFNLLFSQLT---LYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSG---F-SLALFINCASVMKNVLS   94 (138)
Q Consensus        22 ig~~~~~~g~~~~~~q~~---~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~---~-~~~~~l~~~~~~~~~~~   94 (138)
                      .++..+.+++..++.+..   .++++.||+++.+.+.+++.+..++++.++......+   . ..| .+....++.++++
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~-~~~~~~~l~~~ge  396 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVN-WLIASYGLQSIGE  396 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHH-HHHHHHHHHHHHH
Confidence            556667788777766442   2478888888889999999999999988877654311   0 122 2345677889999


Q ss_pred             HHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHc
Q 043916           95 VSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAG  132 (138)
Q Consensus        95 ~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~ig  132 (138)
                      .+..|...+++.+.+|++.||+++|++....+++..++
T Consensus       397 ~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~  434 (500)
T PRK09584        397 LMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIA  434 (500)
T ss_pred             HHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999876655555544

>PRK09669 putative symporter YagG; Provisional

Probab=98.30  E-value=1.5e-05  Score=63.21  Aligned_cols=112  Identities=13%  Similarity=0.102  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043916           22 VGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITRL  101 (138)
Q Consensus        22 ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~  101 (138)
                      ....+...+....+.+..+.+++.||+|+|+.++.+.....+.....-+..  .+. .|. +.....+.+++.+...|..
T Consensus       265 ~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~-~~~~~~i~g~~~~~~~~~~  340 (444)
T PRK09669        265 LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIP--PSN-VWL-IFALNILFNFIQNLTTPLQ  340 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhC--cch-HHH-HHHHHHHHHHHHHHHHHHH
Confidence            333333445555556688889999999999999988776654333222211  111 122 2234456778888888999


Q ss_pred             HHHHhhcccchh-------hhhhhhHHHHHHHHHhhHccCCcC
Q 043916          102 FLLQNRAVEQHQ-------RGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus       102 ~~li~~~~p~~~-------~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      .+++++.++.+|       .|...|.......++.++||.++|
T Consensus       341 ~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g  383 (444)
T PRK09669        341 WSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVG  383 (444)
T ss_pred             HHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999987332       456778888889999999998876

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.29  E-value=2.6e-05  Score=60.53  Aligned_cols=119  Identities=8%  Similarity=-0.034  Sum_probs=80.0

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916           14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL   93 (138)
Q Consensus        14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~   93 (138)
                      .+|+|+.+.|+..........+. ..+.+++.||++++.................+......  ..|. +.....+...+
T Consensus       237 ~~g~~~~~~~~~~~~~~~~~~~g-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~g  312 (394)
T PRK11652        237 VLGLSSMTVSILFILPIPAAFFG-AWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVM--NVWT-LLVPAALFFFG  312 (394)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cHHH-HHHHHHHHHHH
Confidence            37899999999988887777766 55778999999844333322222222222222111100  1122 22334556677


Q ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           94 SVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        94 ~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      .+...|..++...+..| +++|+..++.++...++..+||.++|
T Consensus       313 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~  355 (394)
T PRK11652        313 AGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSA  355 (394)
T ss_pred             HHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            78888999998888886 58899999999999999999998765

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.29  E-value=1.7e-05  Score=62.59  Aligned_cols=111  Identities=13%  Similarity=0.053  Sum_probs=69.8

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhh-hHHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLS-GFSLALFINCASVMKN   91 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~l~~~~~~~~   91 (138)
                      ..+|++..+.+...+.......+.|. +.+++.||+++|+....+..+..+..  .|...... ....+..+ ....+-.
T Consensus       272 ~~~g~s~~~~~~~~~i~~~~~~i~~~-~~G~l~Dr~grr~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~  347 (432)
T PRK10406        272 NTAGMHANVASGIMTAALFVFMLIQP-LIGALSDKIGRRTSMLCFGSLAALFT--VPILSALQNVSSPYAAF-GLVMCAL  347 (432)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCchHHHHHHHHHHHHHH--HHHHHHHHcCCcHHHHH-HHHHHHH
Confidence            34788999999999998888888866 55899999999998776655433222  12111000 00011111 1111112


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHH
Q 043916           92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSL  127 (138)
Q Consensus        92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl  127 (138)
                      ...+...+....++++..|+|.||+..|+.......
T Consensus       348 ~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~  383 (432)
T PRK10406        348 LIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANA  383 (432)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHH
Confidence            222333445677889999999999999998776553

>PRK10133 L-fucose transporter; Provisional

Probab=98.24  E-value=1.7e-05  Score=63.11  Aligned_cols=116  Identities=8%  Similarity=0.015  Sum_probs=85.2

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916           12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN   91 (138)
Q Consensus        12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~   91 (138)
                      ++.+|+|+.+.|+.+..+++...+. -++.+++.||+|++|+.+.+..+......+..+...   .  +.  .....+..
T Consensus       287 ~~~~g~s~~~ag~~~~~~~~~~~vG-~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~---~--~~--~~~~~l~g  358 (438)
T PRK10133        287 EEIPGMTAGFAANYLTGTMVCFFIG-RFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGG---H--VG--LIALTLCS  358 (438)
T ss_pred             hhcCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCC---h--HH--HHHHHHHH
Confidence            4568999999999999999999998 457899999999999999887766555444332221   1  11  12334567


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      ++.+..+|..++...+..|+ +.|++.++.. ....+-.++|.+.|
T Consensus       359 lg~~~i~P~~~s~a~~~~~~-~~~~as~l~~-~~~~g~~~~~~i~G  402 (438)
T PRK10133        359 AFMSIQYPTIFSLGIKNLGQ-DTKYGSSFIV-MTIIGGGIVTPVMG  402 (438)
T ss_pred             HHHHHHHHHHHHHHHcccch-hhccchhHHh-HHhccchHHHHHHH
Confidence            88999999999999998765 5677888775 34456667766544

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.18  E-value=6.6e-06  Score=65.08  Aligned_cols=118  Identities=8%  Similarity=-0.027  Sum_probs=69.9

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHH--HHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916           14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLL--TSYTYIAMLSGFSLALFINCASVMKN   91 (138)
Q Consensus        14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~~l~~~~~~~~   91 (138)
                      ..|+|+.+.++.....++...+.+. +.+++.||+++++....+........  .+.........  .+... ....  .
T Consensus       281 ~~g~s~~~~~~~~~~~~~~~~ig~~-~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~--~  354 (438)
T TIGR00712       281 VKHFALDKSSWAYFLYEYAGIPGTL-LCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGN--PLVDM-ICMI--V  354 (438)
T ss_pred             ccCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCc--hHHHH-HHHH--H
Confidence            4789999999999999998888854 77999999965432222222111111  11111100001  12111 1111  1


Q ss_pred             HHHHHHHH--HHHHHHhhcccchhhhhhhhHHHHHHHHH-hhHccCCcC
Q 043916           92 VLSVSIIT--RLFLLQNRAVEQHQRGAANGLVMTVVSLT-KTAGPAVRG  137 (138)
Q Consensus        92 ~~~~~~~p--~~~~li~~~~p~~~~G~~~G~~~s~~sl~-r~igP~i~G  137 (138)
                      .+.....|  .......+..|+++||+++|+.++...++ .++||.+.|
T Consensus       355 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G  403 (438)
T TIGR00712       355 IGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG  403 (438)
T ss_pred             HHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHH
Confidence            22222222  22346778899999999999999988876 578998876

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.16  E-value=5.3e-06  Score=67.50  Aligned_cols=114  Identities=11%  Similarity=0.048  Sum_probs=94.8

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV   92 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~   92 (138)
                      ..++.+.+|++|+.+.......+. ..+...+.||+|.|.+...|..+...++++..+.+..     |..++..-++-++
T Consensus        74 ~~f~~s~~~~~~i~sl~~~~~~~~-gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i-----~~l~lt~gvi~G~  147 (509)
T KOG2504|consen   74 DYFGSSSSQIAWIGSLLLGVYLLA-GPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSL-----WQLYLTFGVIGGL  147 (509)
T ss_pred             HHhCCCccHHHHHHHHHHHHHHHh-ccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhH-----HHHHHHHHHHhhc
Confidence            357788999999999999888887 7788999999999999999999999999998888763     6555566667788


Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHcc
Q 043916           93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGP  133 (138)
Q Consensus        93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP  133 (138)
                      |.++.+.....+++++. +++|+.++|+..+..++|-.+=|
T Consensus       148 G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~  187 (509)
T KOG2504|consen  148 GLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFP  187 (509)
T ss_pred             cchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHH
Confidence            88888887888888666 67999999999888777655433

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.16  E-value=7.2e-05  Score=58.41  Aligned_cols=116  Identities=15%  Similarity=0.051  Sum_probs=94.6

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916           11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK   90 (138)
Q Consensus        11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~   90 (138)
                      ..+++|+|.++.|++-+.--+....+ .+..|++.||+|+.|.+.+++.+.+.+.++=+...       -..+.....+.
T Consensus        38 Ir~~~gls~s~aGlLTtLPll~fg~~-ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~~-------~~~L~~gt~l~  109 (395)
T COG2807          38 IRQDLGLSFSVAGLLTTLPLLAFGLF-APAAPRLARRFGEERSLFLALLLIAAGILIRSLGG-------LPLLFLGTLLA  109 (395)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHH
Confidence            34689999999999999999999998 77889999999999999999998888766443321       12344555666


Q ss_pred             HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCC
Q 043916           91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAV  135 (138)
Q Consensus        91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i  135 (138)
                      .++-+...-...+++.+..| ++.|.++|++......+.++++.+
T Consensus       110 G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~l  153 (395)
T COG2807         110 GAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAAL  153 (395)
T ss_pred             HhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhh
Confidence            77778888888899999996 588999999999999988887754

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.14  E-value=1.8e-05  Score=64.08  Aligned_cols=111  Identities=14%  Similarity=0.035  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhHhhhhhHH-------HHHHHHHHHHHHHHHHhh----hhhhhh-HHHHHHHHHHHHHH
Q 043916           23 GQVLAISGFNLLFSQLTLYPYVERIIGPII-------ITRIAGVLSITLLTSYTY----IAMLSG-FSLALFINCASVMK   90 (138)
Q Consensus        23 g~~~~~~g~~~~~~q~~~~~~l~~~~g~~~-------~~~~~~~~~~~~~~~~p~----~~~~~~-~~~~~~l~~~~~~~   90 (138)
                      .++.+.+.+..++. ..+..++.+|+++|+       .+.+|+.+...+++.+..    .....+ ...|. +.....+.
T Consensus       312 ~~~~~~n~~~iii~-~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~-~i~~~~l~  389 (489)
T PRK10207        312 VSFQALNPFWVVVA-SPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWF-IVLVYLFQ  389 (489)
T ss_pred             HHHHhHhHHHHHHH-HHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHH-HHHHHHHH
Confidence            34445565666555 556788999998886       366677776666543311    111111 12233 23566788


Q ss_pred             HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCC
Q 043916           91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAV  135 (138)
Q Consensus        91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i  135 (138)
                      ++++.+..|...+.+.+.+|++.+|.++|+++...++|..+|-.+
T Consensus       390 g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l  434 (489)
T PRK10207        390 SLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYV  434 (489)
T ss_pred             HHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999988887544

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.13  E-value=5.2e-05  Score=60.77  Aligned_cols=118  Identities=14%  Similarity=0.121  Sum_probs=82.3

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 043916           18 STKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSI   97 (138)
Q Consensus        18 s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~   97 (138)
                      +.++.++..+..++..++.+ ++.+++.||+|+|+.+..+..+..+..+.+.+.........|. +.....+..++.+..
T Consensus       264 ~~~~~~~~~~~~~i~~ii~~-~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~l~g~~~~~~  341 (473)
T PRK10429        264 DADLFPYYLSYAGAANLVTL-ILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALL-IVIAGILLNIGTALF  341 (473)
T ss_pred             CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHH-HHHHHHHHHHHHHHH
Confidence            46678888888888888884 5779999999999999988876665554443221111111122 223445566777878


Q ss_pred             HHHHHHHHhhcccc-------hhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           98 ITRLFLLQNRAVEQ-------HQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        98 ~p~~~~li~~~~p~-------~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      .+...+++++.++.       ++.|...|......-++.++||.+.|
T Consensus       342 ~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g  388 (473)
T PRK10429        342 WVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIG  388 (473)
T ss_pred             HHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            88889999999873       22344889988888899999887765

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.12  E-value=1.7e-05  Score=60.47  Aligned_cols=112  Identities=15%  Similarity=0.017  Sum_probs=73.7

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV   92 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~   92 (138)
                      ..+|+++.+.|+.....++...+.+ .+.+++.||+|+|+....+.........++.+.....+. .+. ......+..+
T Consensus       254 ~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~  330 (366)
T TIGR00886       254 DQFGLSKVTAGAYASLGGLLGSLAR-PLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLS-LAV-FIVLFVALFF  330 (366)
T ss_pred             HHcCCcHHHHHHHHHHHHHHHHHHh-hccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcch-HHH-HHHHHHHHHH
Confidence            3589999999999999999888884 477999999999988887776665555444332110001 111 1122223334


Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHH
Q 043916           93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLT  128 (138)
Q Consensus        93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~  128 (138)
                      +.+...+....++.+..| +++|+++|+.++...+|
T Consensus       331 ~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       331 FSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             Hhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            444445556666676665 79999999988776543

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.12  E-value=1.9e-05  Score=63.83  Aligned_cols=113  Identities=15%  Similarity=0.055  Sum_probs=86.2

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 043916           15 LSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLS   94 (138)
Q Consensus        15 lg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~   94 (138)
                      ..-+........+.+-+...+. .++++.+.||+|||+++..+..+..+.-+...++.+.      ..+...+++.+++.
T Consensus       113 ~c~~~~~~~~~~s~~~~G~~vG-~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~------~~~~~~Rfl~G~~~  185 (521)
T KOG0255|consen  113 VCDSSTLVALGQSLFFLGVLVG-SLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNY------WMFLIFRFLSGFFG  185 (521)
T ss_pred             eeCcHhHHHHHHHHHHHHHHHH-HhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcH------HHHHHHHHHHHhhc
Confidence            3445555556666666666665 6688999999999999999999998887777766553      24557888888888


Q ss_pred             HHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCC
Q 043916           95 VSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAV  135 (138)
Q Consensus        95 ~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i  135 (138)
                      +........++.+..++++|+.+..+ ......+..++|+.
T Consensus       186 ~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~  225 (521)
T KOG0255|consen  186 SGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAG  225 (521)
T ss_pred             cchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHH
Confidence            88888999999999999999999999 44444444444443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.11  E-value=5.5e-05  Score=59.69  Aligned_cols=127  Identities=12%  Similarity=0.024  Sum_probs=100.9

Q ss_pred             cCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 043916            8 SLRKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCAS   87 (138)
Q Consensus         8 ~~~~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~   87 (138)
                      +|+-..-||+++.|...+-+..+....+.-......+.+|.++++...+++....+++.+.-+.....+  .|. +-...
T Consensus       232 EPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~--~~~-~~~~~  308 (403)
T PF03209_consen  232 EPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGS--PWL-FRPGV  308 (403)
T ss_pred             CCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhccc--chH-HHHHH
Confidence            566667899999999999999998888774444455666899999999999999888877665544322  232 33455


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           88 VMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        88 ~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      ++..++.+....+..++..+.+++++.|..+|.+...++++|.+|-.+||
T Consensus       309 ~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG  358 (403)
T PF03209_consen  309 FLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGG  358 (403)
T ss_pred             HHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            66688888888888888888999999999999999999999999877765

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.10  E-value=1.6e-05  Score=63.00  Aligned_cols=118  Identities=10%  Similarity=0.041  Sum_probs=90.6

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916           12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN   91 (138)
Q Consensus        12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~   91 (138)
                      .+.+|++..|+........+..++. .++.|++.+|+|.|+++..++.++.+..+..-+....  ...|..    -.+.+
T Consensus       280 ~~~~gls~~~lll~g~~~~vvA~lg-~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~--~~f~i~----gll~g  352 (438)
T COG2270         280 AADLGLSSTELLLIGIALSVVAALG-AIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGE--LDFWIL----GLLVG  352 (438)
T ss_pred             HHHcCccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHcccc--HHHHHH----HHHHH
Confidence            3579999999999998888888888 6689999999999999999988877665433222221  112321    12334


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCc
Q 043916           92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVR  136 (138)
Q Consensus        92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~  136 (138)
                      ...+-...+.-++..+.+|+++-|+..|+.+...-.+..+||.+-
T Consensus       353 ~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv  397 (438)
T COG2270         353 TSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLV  397 (438)
T ss_pred             HhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHH
Confidence            555666778899999999999999999999999888888888653

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.08  E-value=5e-05  Score=59.26  Aligned_cols=118  Identities=15%  Similarity=0.051  Sum_probs=86.9

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHH-HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGV-LSITLLTSYTYIAMLSGFSLALFINCASVMKN   91 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~   91 (138)
                      .+-|+|+.|-|.+.+...+..+.. .+..|.+.+|..++|-+..... ....++.-+-+... .....|      ..+.+
T Consensus       236 i~~G~sa~~aG~llsl~~l~~~~~-~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~-~~~~lw------~~llG  307 (395)
T COG2807         236 IDRGLSAAEAGSLLSLMQLAQLPT-ALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPG-QLPILW------ALLLG  307 (395)
T ss_pred             HHcCCCHHHhhhHHHHHHHHHHHH-HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhh-hHHHHH------HHHHh
Confidence            456999999999999999999998 6688999998887775554333 33333222211111 011223      24567


Q ss_pred             HHHHHHHHHHHHHHhhccc-chhhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916           92 VLSVSIITRLFLLQNRAVE-QHQRGAANGLVMTVVSLTKTAGPAVRGA  138 (138)
Q Consensus        92 ~~~~~~~p~~~~li~~~~p-~~~~G~~~G~~~s~~sl~r~igP~i~G~  138 (138)
                      .+.+..||...++++..++ +++-++..|+.|+...+=.++||.+.|+
T Consensus       308 ~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~  355 (395)
T COG2807         308 LGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGF  355 (395)
T ss_pred             CccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhH
Confidence            8889999988888887776 4899999999999999999999998774

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.99  E-value=2.7e-05  Score=59.57  Aligned_cols=118  Identities=14%  Similarity=0.097  Sum_probs=76.9

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHH-HHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916           12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLL-TSYTYIAMLSGFSLALFINCASVMK   90 (138)
Q Consensus        12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~~~   90 (138)
                      +..+|+|+.+.|-+.+..=...++. ..+++.+.|++|.+-.++.+-.+..+.- ...-+ +.+   ..|..+    .+.
T Consensus       292 ~~rfGlS~~~a~~i~s~vy~Isav~-spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F-t~l---sPy~~m----~~l  362 (459)
T KOG4686|consen  292 QKRFGLSAVSAGNILSTVYGISAVL-SPVFGAISDKYGFNLWWVASACILTLLGHSGLFF-TFL---SPYTSM----TFL  362 (459)
T ss_pred             HHhhCCChhhccchhhhhhhhhhhh-hhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh-hhc---cHHHHH----HHH
Confidence            4569999999998877766666665 6788999999998877776554433321 11111 111   123322    222


Q ss_pred             HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916           91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRGA  138 (138)
Q Consensus        91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G~  138 (138)
                      ++.....--+.--.+...+|+|+.|++.|..||.+.+|-++-|+++|.
T Consensus       363 GLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~  410 (459)
T KOG4686|consen  363 GLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGF  410 (459)
T ss_pred             hhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhhe
Confidence            222222222233445566789999999999999999999999999873

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=97.98  E-value=0.0001  Score=57.44  Aligned_cols=47  Identities=11%  Similarity=0.053  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      ..+....++...++.++..|+|.||+..|+.++...++..++|.+.|
T Consensus       291 ~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~  337 (368)
T TIGR00903       291 GLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAM  337 (368)
T ss_pred             HHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHH
Confidence            34455566778889999999999999999999999999988887653

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.97  E-value=0.00025  Score=57.44  Aligned_cols=109  Identities=8%  Similarity=-0.017  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043916           22 VGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITRL  101 (138)
Q Consensus        22 ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~  101 (138)
                      .+.+.+.+-+..++. .+..+++.||+|+|..+.++..+...+-+++-+......   .-.+.+.+.+.++..+......
T Consensus        62 wS~~vs~f~iG~~~G-s~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~---~e~li~GR~i~Gl~~gl~~~~~  137 (485)
T KOG0569|consen   62 WSLIVSIFFIGGMIG-SFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPS---FEMLILGRLIVGLACGLSTGLV  137 (485)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHhHHHHHHH
Confidence            445556666667776 557899999999999999888888777666655444321   2245578888888888888899


Q ss_pred             HHHHhhcccchhhhhhhhHHHHHHHHHhhHccC
Q 043916          102 FLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPA  134 (138)
Q Consensus       102 ~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~  134 (138)
                      ..++++.+|++.||.+.-+.|...++|..+|-.
T Consensus       138 pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~  170 (485)
T KOG0569|consen  138 PMYLTEISPKNLRGALGTLLQIGVVIGILLGQV  170 (485)
T ss_pred             HHHHhhcChhhhccHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999888733

>PRK09669 putative symporter YagG; Provisional

Probab=97.93  E-value=2.7e-05  Score=61.75  Aligned_cols=121  Identities=7%  Similarity=-0.043  Sum_probs=77.4

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhh----hhhHHHHH-HHHHHHHHHHHHHhhhhhhh--hHHHHHHH
Q 043916           11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERI----IGPIIITR-IAGVLSITLLTSYTYIAMLS--GFSLALFI   83 (138)
Q Consensus        11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~----~g~~~~~~-~~~~~~~~~~~~~p~~~~~~--~~~~~~~l   83 (138)
                      ..+.+|+|+.++|.++...-+..++.+. +.+++.||    +|+||-+. ++.....+.+.+.-..+...  +...|.. 
T Consensus        36 ~t~~~gls~~~~g~i~~i~~i~dai~dp-~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~-  113 (444)
T PRK09669         36 YTDVFGLSAAIMGTMFLVVRVLDAVTDP-LMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYAC-  113 (444)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHcccc-eeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHH-
Confidence            3456899999999999999999999965 77999998    67766555 44444444443322222111  1122332 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccc-chhhhhhhhHHHHHHHHHhhHccC
Q 043916           84 NCASVMKNVLSVSIITRLFLLQNRAVE-QHQRGAANGLVMTVVSLTKTAGPA  134 (138)
Q Consensus        84 ~~~~~~~~~~~~~~~p~~~~li~~~~p-~~~~G~~~G~~~s~~sl~r~igP~  134 (138)
                      ...... ..+..+......++..+..+ ++||.+.++..+....+|..+++.
T Consensus       114 ~~~~l~-~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~  164 (444)
T PRK09669        114 VTYILL-SLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSV  164 (444)
T ss_pred             HHHHHH-HHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            122222 33333444446678888774 589999999988888887777654

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=97.93  E-value=0.00014  Score=56.49  Aligned_cols=120  Identities=7%  Similarity=-0.140  Sum_probs=70.5

Q ss_pred             CCCCChhHHHHHH--HHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHH-HHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916           14 GLSYSTKNVGQVL--AISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLS-ITLLTSYTYIAMLSGFSLALFINCASVMK   90 (138)
Q Consensus        14 glg~s~~~ig~~~--~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~l~~~~~~~   90 (138)
                      +.|.|.+|+|...  +..-....+.+.+.-++..||+|+||.+.+...+. ..................|..  ....+.
T Consensus        30 ~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  107 (390)
T TIGR02718        30 EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAV--GLLACA  107 (390)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHH--HHHHHH
Confidence            3589999999973  44444444553433345678899999876555332 211111111100011112322  223334


Q ss_pred             HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCC
Q 043916           91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAV  135 (138)
Q Consensus        91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i  135 (138)
                      ....+...+....+..+..++++++..++......++|..+|+..
T Consensus       108 ~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~  152 (390)
T TIGR02718       108 SLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAG  152 (390)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            455666667778788888888888888888877778888887753

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=97.89  E-value=1.7e-07  Score=73.81  Aligned_cols=115  Identities=8%  Similarity=-0.007  Sum_probs=94.3

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 043916           18 STKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSI   97 (138)
Q Consensus        18 s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~   97 (138)
                      +..+.++..+..-+...+. .++.+.+.||+|||+.+..+..+..++.++..+.+...+   +..+...+.+.+++.+..
T Consensus        44 ~~~~~~~~~~~~~~g~~~G-~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~R~~~G~~~g~~  119 (451)
T PF00083_consen   44 SSLLSSLLTSSFFIGAIVG-ALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNN---FWMLLIGRFLIGFGIGGA  119 (451)
T ss_pred             hHHHHHHHHHHHHhhhccc-ccccccccccccccccccccccccccccccccccccccc---cccccccccccccccccc
Confidence            4567888888888888888 668899999999999999999999888887777652101   223456778888888888


Q ss_pred             HHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCc
Q 043916           98 ITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVR  136 (138)
Q Consensus        98 ~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~  136 (138)
                      .+....++++.+|+++||+...+.+....+|..++..++
T Consensus       120 ~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~  158 (451)
T PF00083_consen  120 YVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIG  158 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999999998888887776553

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=97.86  E-value=7.9e-06  Score=65.45  Aligned_cols=116  Identities=12%  Similarity=0.083  Sum_probs=88.9

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhH-HHHHHHHHHHHHHHHHH
Q 043916           16 SYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGF-SLALFINCASVMKNVLS   94 (138)
Q Consensus        16 g~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~l~~~~~~~~~~~   94 (138)
                      ++++.--+.+-.+.-+..++.|+ +++++.||+|+|++|...+.+..+..+...+....... .....+.+.+.+.++|-
T Consensus        80 ~~ps~i~~~Vn~~A~vGti~GQl-~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGI  158 (538)
T KOG0252|consen   80 HYPSGVLALVNAAALVGTIFGQL-FFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGI  158 (538)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHH-HHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccc
Confidence            47778888888888899999998 77999999999999999999888887644432221111 12223457788888899


Q ss_pred             HHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHc
Q 043916           95 VSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAG  132 (138)
Q Consensus        95 ~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~ig  132 (138)
                      +.-+|...++.|+.+....||+..+..-+.+.+|-..|
T Consensus       159 GGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG  196 (538)
T KOG0252|consen  159 GGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAG  196 (538)
T ss_pred             cCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhc
Confidence            99999999999999999999997776655555554443

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.83  E-value=0.00097  Score=53.41  Aligned_cols=115  Identities=17%  Similarity=0.143  Sum_probs=75.6

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhh----HHHHHHHHHHHHHHH
Q 043916           16 SYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSG----FSLALFINCASVMKN   91 (138)
Q Consensus        16 g~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~----~~~~~~l~~~~~~~~   91 (138)
                      |+++.++|..-+...+..+.. .+++|++.||+|..|.-.++...-.....+.-..-..++    ......+....++-.
T Consensus       289 G~s~~~igi~R~~gav~Gl~g-T~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR  367 (432)
T PF06963_consen  289 GYSPSVIGIFRGLGAVFGLLG-TWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSR  367 (432)
T ss_pred             CCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHH
Confidence            899999999999988888887 779999999999998777665533222111111111111    111122223333333


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhH
Q 043916           92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTA  131 (138)
Q Consensus        92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~i  131 (138)
                      +|-=..--+.+-++-+.+|++|||+++|+-.|.+++.-.+
T Consensus       368 ~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll  407 (432)
T PF06963_consen  368 IGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELL  407 (432)
T ss_pred             HHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHH
Confidence            3433333467788888999999999999999999876543

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=97.82  E-value=0.00012  Score=58.91  Aligned_cols=98  Identities=11%  Similarity=0.013  Sum_probs=62.3

Q ss_pred             HhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhh
Q 043916           38 LTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAA  117 (138)
Q Consensus        38 ~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~  117 (138)
                      .++..++.||+|+|+++..+..+..+...++.+.........+.  ...............|....+.++..|++.||+.
T Consensus       352 ~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~  429 (502)
T TIGR00887       352 YWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFL--AIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTA  429 (502)
T ss_pred             HHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHH--HHHHHHHHHHhcCCCchhhhhhhccCchhHHHHH
Confidence            34668899999999998887766665554443322100000011  1111111112222334556777999999999999


Q ss_pred             hhHHHHHHHHHhhHccCCcC
Q 043916          118 NGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus       118 ~G~~~s~~sl~r~igP~i~G  137 (138)
                      .|+.+....++..++|.+.|
T Consensus       430 ~g~~~~~~~~~~~~~~~~~~  449 (502)
T TIGR00887       430 HGISAASGKAGAIIGQFGFL  449 (502)
T ss_pred             HHHHHHHhhhHHHHHHHHhh
Confidence            99999999999999987654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=97.81  E-value=0.00064  Score=55.52  Aligned_cols=118  Identities=13%  Similarity=0.168  Sum_probs=93.8

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhh--hHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916           14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIG--PIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN   91 (138)
Q Consensus        14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g--~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~   91 (138)
                      ..+++..|...+++..|+...+..+ +.+++.|+..  .+.++.+++....+..+..|+.+...      .+....++.+
T Consensus       327 ~~g~~~~~aa~l~Siigi~~i~gRi-~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~------~l~~~~~~fG  399 (509)
T KOG2504|consen  327 SLGLSSNDAAFLLSIIGVSDIIGRI-ILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYV------GLIVFSILFG  399 (509)
T ss_pred             hcCCChhhhHHHHHHHHHhhhhhhh-hhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHH------HHHHHHHHHH
Confidence            6899999999999999999999965 7899999988  55677777777777777888776532      2223333445


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916           92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRGA  138 (138)
Q Consensus        92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G~  138 (138)
                      ...+........++.+.++.|+...+.|+..-..+++-.+||+++|+
T Consensus       400 ~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~  446 (509)
T KOG2504|consen  400 FCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGL  446 (509)
T ss_pred             HHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCccccee
Confidence            55555555555788899999999999999999999999999999884

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.79  E-value=0.0021  Score=44.65  Aligned_cols=88  Identities=13%  Similarity=0.104  Sum_probs=70.0

Q ss_pred             hhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhh
Q 043916           40 LYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANG  119 (138)
Q Consensus        40 ~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G  119 (138)
                      +.|.+.+++|+|+...++...+++-....-..       .+..++..-.+.+++.+..+.+--..+++..++|++++-.|
T Consensus        56 ~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~-------~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~  128 (156)
T PF05978_consen   56 FAPSIVNKLGPKWSMILGSLGYAIYIASFFYP-------NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTG  128 (156)
T ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHH
Confidence            56999999999999999999887654332111       12344566677789999999999999999999999999999


Q ss_pred             HHHHHHHHHhhHccC
Q 043916          120 LVMTVVSLTKTAGPA  134 (138)
Q Consensus       120 ~~~s~~sl~r~igP~  134 (138)
                      +..+....+..+|.+
T Consensus       129 ifw~i~~~s~i~G~~  143 (156)
T PF05978_consen  129 IFWAIFQSSLIFGNL  143 (156)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999998888877754

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF13347 MFS_2: MFS/sugar transport protein

Probab=97.78  E-value=7.6e-05  Score=58.86  Aligned_cols=113  Identities=9%  Similarity=0.062  Sum_probs=82.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043916           20 KNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIIT   99 (138)
Q Consensus        20 ~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p   99 (138)
                      ...+.......+...+. .++.+++.||+|+||.+..+..+.....+.+.+...  ++ .|. +.....+.+++.+..++
T Consensus       260 ~~~~~~~~~~~~~~~v~-~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~-~~i~~~l~gi~~~~~~~  334 (428)
T PF13347_consen  260 GLISIFMLIFFVASIVG-SPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGP--GS-PWL-VLILFILAGIGYGAFFV  334 (428)
T ss_pred             hhhHHHHHHHHHHHHHH-HHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHh--hh-HHH-HHHHHHHhHhhhccccc
Confidence            56677777777776766 778899999999999999999999998887766542  11 122 23445566777777778


Q ss_pred             HHHHHHhhcccch-------hhhhhhhHHHHHHHHHhhHccCCcC
Q 043916          100 RLFLLQNRAVEQH-------QRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus       100 ~~~~li~~~~p~~-------~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      ...+++.+..+.+       +.|..+|+.....-++.++++.+.|
T Consensus       335 ~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g  379 (428)
T PF13347_consen  335 IPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVG  379 (428)
T ss_pred             ccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHH
Confidence            8888898888743       3577788877777777777766543

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=97.73  E-value=0.00065  Score=48.75  Aligned_cols=112  Identities=16%  Similarity=0.090  Sum_probs=82.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043916           20 KNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIIT   99 (138)
Q Consensus        20 ~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p   99 (138)
                      .+.++..+...+...+.+ .+.+++.||+|+|+.+..+........+...+... .  ..+ .+...+....++.+...|
T Consensus        39 ~~~~~~~~~~~~~~~~~~-~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~-~~~~~~~~~g~~~~~~~~  113 (338)
T COG0477          39 LLYGLLLSAFFLGYAIGS-LLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN-V--GLA-LLLILRLLQGLGGGGLLP  113 (338)
T ss_pred             HHHHHHHHHHHHHHHHHh-hhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc-c--hHH-HHHHHHHHHHhhhHHHHH
Confidence            578899999999998886 68899999999998888777653333333333332 0  112 223344446777788889


Q ss_pred             HHHHHHhhcccc-hhhhhhhhHHHH-HHHHHhhHccCCc
Q 043916          100 RLFLLQNRAVEQ-HQRGAANGLVMT-VVSLTKTAGPAVR  136 (138)
Q Consensus       100 ~~~~li~~~~p~-~~~G~~~G~~~s-~~sl~r~igP~i~  136 (138)
                      ...+++.+..|+ ++|+...+.... ....+..++|.++
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (338)
T COG0477         114 VASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLA  152 (338)
T ss_pred             HHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998 789999999988 5888888887554

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=97.71  E-value=0.00025  Score=57.00  Aligned_cols=114  Identities=12%  Similarity=0.076  Sum_probs=69.0

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHH-------HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q 043916           14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPII-------ITRIAGVLSITLLTSYTYIAMLSGFSLALFINCA   86 (138)
Q Consensus        14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~-------~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~   86 (138)
                      .+|+++.+.+.+.+..++...+.+. +.+++.||+++|+       .......+..+...+++.....     +.. ...
T Consensus       282 ~~g~s~~~a~~~~~~~~~~~~ig~~-~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~-----~~~-~~~  354 (476)
T PLN00028        282 RFGLSLETAGAIAASFGLMNLFARP-AGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSL-----GAA-IVV  354 (476)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchH-----HHH-HHH
Confidence            4799999999999999999999855 7799999998752       2222222222222333332211     111 112


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCC
Q 043916           87 SVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAV  135 (138)
Q Consensus        87 ~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i  135 (138)
                      +.+...+.....+...+++.+. +++++|++.|+......++..++|.+
T Consensus       355 ~~l~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~g~lg~~i~~~l  402 (476)
T PLN00028        355 MILFSIFVQAACGATFGIVPFV-SRRSLGVISGLTGAGGNVGAVLTQLL  402 (476)
T ss_pred             HHHHHHHHHHhhhhhcccCccc-ChhhchhhhhhhhccccHHHHHHHHH
Confidence            2222333333444445555544 45799999999988777777777754

>PRK10429 melibiose:sodium symporter; Provisional

Probab=97.69  E-value=0.00019  Score=57.52  Aligned_cols=117  Identities=9%  Similarity=0.019  Sum_probs=75.7

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHh----hhhhHHHHH-HHHHHHHHHHHHHhhhhhhhh--HHHHHHHH
Q 043916           12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVER----IIGPIIITR-IAGVLSITLLTSYTYIAMLSG--FSLALFIN   84 (138)
Q Consensus        12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~----~~g~~~~~~-~~~~~~~~~~~~~p~~~~~~~--~~~~~~l~   84 (138)
                      ++.+|+++.++|.++....+..++.+. +.+.+.|    |+|+||-+. ++.....+.+.++-.....+.  ...|..  
T Consensus        34 t~v~Gls~~~vg~i~~i~ri~dai~dp-~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~--  110 (473)
T PRK10429         34 TDVVGLSVGLVGTLFLVARIWDAINDP-IMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVC--  110 (473)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHhhc-hheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHH--
Confidence            455899999999999999999999955 7789999    669866554 455555555443321111111  112322  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccc-chhhhhhhhHHHHHHHHHhhH
Q 043916           85 CASVMKNVLSVSIITRLFLLQNRAVE-QHQRGAANGLVMTVVSLTKTA  131 (138)
Q Consensus        85 ~~~~~~~~~~~~~~p~~~~li~~~~p-~~~~G~~~G~~~s~~sl~r~i  131 (138)
                      ....+..++..+......++..+..+ ++||.+.++.......++-.+
T Consensus       111 ~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~  158 (473)
T PRK10429        111 VTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFV  158 (473)
T ss_pred             HHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            22233355566666667888888884 799999999865555555333

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=97.66  E-value=0.00041  Score=55.15  Aligned_cols=118  Identities=10%  Similarity=-0.002  Sum_probs=69.1

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHH--------HHHHHHH--HHHHHHHhhhhhhhhHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIIT--------RIAGVLS--ITLLTSYTYIAMLSGFSLALF   82 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~--------~~~~~~~--~~~~~~~p~~~~~~~~~~~~~   82 (138)
                      ..+|++..+.|+..+...+...+. ..+.+++.||+++++..        ..+....  .......+...   .. .+..
T Consensus       290 ~~~g~s~~~~g~~~~~~~~~~~i~-~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~  364 (465)
T TIGR00894       290 WVLRVSGKENGLLSSLPYLFAWLC-SIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLS---AA-FYLT  364 (465)
T ss_pred             HHhCcChHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcC---Cc-hHHH
Confidence            347899999999999888888887 45789999988754211        1111111  11111111111   11 1111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           83 INCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        83 l~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                       ...+.+...+.+...+.......+.+|+ .+|.++|+.+....++..++|.+.|
T Consensus       365 -~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g  417 (465)
T TIGR00894       365 -IIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAG  417 (465)
T ss_pred             -HHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence             1122222233333334444444455655 8999999999999999999998766

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.61  E-value=0.00062  Score=55.23  Aligned_cols=118  Identities=15%  Similarity=0.085  Sum_probs=86.2

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHH-HHH--HHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFS-LAL--FINCASVM   89 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~--~l~~~~~~   89 (138)
                      ..-|++.++.-+.-...|....++ .++.+.+.||+|||.+...+..+.....+++-....+.+.. .|.  .......+
T Consensus       298 ~~aG~~~~~a~~an~~~g~v~~~~-t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~  376 (485)
T KOG0569|consen  298 KTAGFTPEEAQYANLGIGIVNLLS-TLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFL  376 (485)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            345788888889899999999998 66889999999999999999998888777666554444322 121  11122222


Q ss_pred             HHH-HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhH
Q 043916           90 KNV-LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTA  131 (138)
Q Consensus        90 ~~~-~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~i  131 (138)
                      ... .+....|.-.-+.++.+|++.|.+++.+...++.+.+.+
T Consensus       377 ~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fi  419 (485)
T KOG0569|consen  377 FIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFI  419 (485)
T ss_pred             HHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHH
Confidence            222 222234777889999999999999999999988877654

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.56  E-value=0.00012  Score=57.87  Aligned_cols=128  Identities=13%  Similarity=0.110  Sum_probs=80.2

Q ss_pred             EEeeeecCCCCCCCCCChh-HHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHH--HHHHHHHHHHHhhhhhhhhHH
Q 043916            2 FSLWAVSLRKYGGLSYSTK-NVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIA--GVLSITLLTSYTYIAMLSGFS   78 (138)
Q Consensus         2 ~pl~~~~~~~~gglg~s~~-~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~   78 (138)
                      +|+|....     +. ++. |+|..+--..+.+.+. ..++..+.||+++.|.+..+  ++.........|+.+...+  
T Consensus       293 lslwm~e~-----m~-~p~w~~G~~fLp~~~~y~ig-~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~--  363 (464)
T KOG3764|consen  293 LSLWMLET-----MF-TPGWEVGLAFLPASLSYAIG-TNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQ--  363 (464)
T ss_pred             cHHHHHHh-----cc-CCCcceeeeecccccchhcc-CchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHH--
Confidence            34555555     44 444 8888888899999988 77999999999966644443  3333444455565554332  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccchhhhhhhhHHHHHHHHHhhHccCCcCC
Q 043916           79 LALFINCASVMKNVLSVSIITRLFLLQNRA--VEQHQRGAANGLVMTVVSLTKTAGPAVRGA  138 (138)
Q Consensus        79 ~~~~l~~~~~~~~~~~~~~~p~~~~li~~~--~p~~~~G~~~G~~~s~~sl~r~igP~i~G~  138 (138)
                      .|.-.....+.-...++...|...-++...  ..-+.-|.+-++.+..-+++-++||.++|.
T Consensus       364 L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~  425 (464)
T KOG3764|consen  364 LWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGS  425 (464)
T ss_pred             HhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccch
Confidence            232211122222233444455444444322  112467999999999999999999999984

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.54  E-value=0.00088  Score=55.66  Aligned_cols=102  Identities=11%  Similarity=0.004  Sum_probs=77.0

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV   92 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~   92 (138)
                      .++| ++.+..|+-+.+.+...+.+ .+.+++.|.||||..+..+.++..++.+...-+++..      .+.....+.++
T Consensus        72 ~diG-~~~~~~w~~~~~~l~~av~~-~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~------~~iag~~l~Gv  143 (599)
T PF06609_consen   72 ADIG-GSDNWSWFSTAWTLASAVSF-PFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMN------TFIAGMVLYGV  143 (599)
T ss_pred             HhcC-CCccchHHHHHHHHHHHHHH-HhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHH------HHHHHHHHHHH
Confidence            3455 35778888888999888885 4789999999999999999999999998887766643      23345556666


Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhhhhHHHH
Q 043916           93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMT  123 (138)
Q Consensus        93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s  123 (138)
                      +.+... .....+++..|.+.|+...++...
T Consensus       144 gaG~~~-~~~~~isEl~p~k~R~~~~~~~~~  173 (599)
T PF06609_consen  144 GAGVQE-LAALAISELVPNKWRGLGLAIASI  173 (599)
T ss_pred             hhHHHH-HHHHHHHHhcccchhhhHhHHHHH
Confidence            655554 456668999999888876665543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=97.52  E-value=0.0015  Score=51.60  Aligned_cols=112  Identities=9%  Similarity=0.098  Sum_probs=75.6

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 043916           16 SYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSV   95 (138)
Q Consensus        16 g~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~   95 (138)
                      +.+..+.+..++..-....+. =++..++.||++++|++..+........++.++....     . . .....+...+.+
T Consensus       265 ~~~~~~a~~~~~~~~~~~~vG-R~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~-----~-~-~~~l~~~glf~s  336 (410)
T TIGR00885       265 GMTAGFAANYNIGAMVIFFIS-RFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGH-----V-G-LYCLTLCSAFMS  336 (410)
T ss_pred             CCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCCh-----H-H-HHHHHHHHHHHH
Confidence            444444444444444444555 4466899999999999998888888777777764331     1 1 123344567788


Q ss_pred             HHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           96 SIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        96 ~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      ..+|...++..+..+++..-..-++..+.  .|-++.|.+.|
T Consensus       337 ~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G  376 (410)
T TIGR00885       337 LMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQG  376 (410)
T ss_pred             HHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHH
Confidence            88899999999999877665555655544  88888887755

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK09848 glucuronide transporter; Provisional

Probab=97.50  E-value=0.00081  Score=53.32  Aligned_cols=123  Identities=10%  Similarity=0.011  Sum_probs=72.1

Q ss_pred             CCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhh----hhHHHH-HHHHHHHHHHHHHHhhhh-hhh--hHHHHH
Q 043916           10 RKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERII----GPIIIT-RIAGVLSITLLTSYTYIA-MLS--GFSLAL   81 (138)
Q Consensus        10 ~~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~----g~~~~~-~~~~~~~~~~~~~~p~~~-~~~--~~~~~~   81 (138)
                      +.++.+|+++.++|.+++...+..++.+. +.+++.||.    |+||.+ ..+.....+...++-... ...  ....|.
T Consensus        34 y~~~~~gl~~~~~g~~~~~~~~~~~~~~~-~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (448)
T PRK09848         34 YYTDVAGVGAAAAGTMLLLVRVFDAFADV-FAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYA  112 (448)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHhhh-hheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHH
Confidence            34456899999999999999999999955 779999986    667755 333332322222210011 111  111122


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccc-chhhhhhhhHHHHH-----HHHHhhHccCC
Q 043916           82 FINCASVMKNVLSVSIITRLFLLQNRAVE-QHQRGAANGLVMTV-----VSLTKTAGPAV  135 (138)
Q Consensus        82 ~l~~~~~~~~~~~~~~~p~~~~li~~~~p-~~~~G~~~G~~~s~-----~sl~r~igP~i  135 (138)
                      .  ....+..++.++..+...++.....+ ++||.+.++.-+..     ..++-.++|.+
T Consensus       113 ~--~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i  170 (448)
T PRK09848        113 Y--LTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSI  170 (448)
T ss_pred             H--HHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1  22234455666666666777666555 47899887766533     23445555544

>TIGR00788 fbt folate/biopterin transporter

Probab=97.43  E-value=0.0011  Score=53.40  Aligned_cols=119  Identities=8%  Similarity=0.015  Sum_probs=77.4

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhh-----hHHHHHHHHHHH-HHHHHHHhhhhhhhhHHHHHHHH
Q 043916           11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIG-----PIIITRIAGVLS-ITLLTSYTYIAMLSGFSLALFIN   84 (138)
Q Consensus        11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g-----~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~l~   84 (138)
                      ....+|+|+.|++...+...+...+- . +..++.||++     +|+...++..+. ...+..++....   . ... ..
T Consensus        52 l~~~lg~s~~~i~~~~sl~~lpw~~K-~-l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~---~-~~~-~~  124 (468)
T TIGR00788        52 LTDDLGLDGARYQRLVGLSSLGWALK-P-FAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVS---S-AKV-AA  124 (468)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHH-H-HHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccc---h-HHH-HH
Confidence            34569999999999999999999985 4 4899999997     555555555544 233333332211   1 111 12


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHH---HHHHHHHhhHccCCcC
Q 043916           85 CASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLV---MTVVSLTKTAGPAVRG  137 (138)
Q Consensus        85 ~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~---~s~~sl~r~igP~i~G  137 (138)
                      ..+.+.+++.+...++...+..+..+ |+++..+++.   .....+|..+|+.++|
T Consensus       125 ~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G  179 (468)
T TIGR00788       125 AFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGG  179 (468)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHH
Confidence            24556677888888899999999998 6665443333   2233467777776665

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK11462 putative transporter; Provisional

Probab=97.42  E-value=0.0011  Score=53.07  Aligned_cols=121  Identities=10%  Similarity=-0.038  Sum_probs=78.7

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhh----hhhHHHHHHHH-HHHHHHHHHHhhhhhhh--hHHHHHHHH
Q 043916           12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERI----IGPIIITRIAG-VLSITLLTSYTYIAMLS--GFSLALFIN   84 (138)
Q Consensus        12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~----~g~~~~~~~~~-~~~~~~~~~~p~~~~~~--~~~~~~~l~   84 (138)
                      .+.+|.++..+|.++...-+..++... +.+.+.||    +|+||-+.... ....+.+.++-.....+  +...|..  
T Consensus        37 t~~~Gl~~~~~g~i~~~~ri~Dai~Dp-~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~--  113 (460)
T PRK11462         37 TDIFGIPAGFVGTMFLVARALDAISDP-CMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAA--  113 (460)
T ss_pred             HHhhCCCHHHHHHHHHHHHHHHHHHhh-hheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHH--
Confidence            356899999999999999999999965 66878774    78888776533 34444443332222111  1122332  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccc-chhhhhhhhHHHHHHHHHhhHccCC
Q 043916           85 CASVMKNVLSVSIITRLFLLQNRAVE-QHQRGAANGLVMTVVSLTKTAGPAV  135 (138)
Q Consensus        85 ~~~~~~~~~~~~~~p~~~~li~~~~p-~~~~G~~~G~~~s~~sl~r~igP~i  135 (138)
                      ....+..++..+..-...++..+..+ +|||.+.++..+....++..++|.+
T Consensus       114 ~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~  165 (460)
T PRK11462        114 ITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVL  165 (460)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            12222244444444457778888877 5999999999988888877666543

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=97.39  E-value=0.0017  Score=51.45  Aligned_cols=89  Identities=11%  Similarity=0.110  Sum_probs=62.3

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhh-hHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916           15 LSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIG-PIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL   93 (138)
Q Consensus        15 lg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~   93 (138)
                      .|+|..|||.+++...+..++.|. +.+.+.||.+ ++|.+.++.....+........+..     |.. ...+.+..+.
T Consensus        32 ~G~s~~qIG~l~a~~~~~~i~~~~-~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f-----~~~-~~~~~l~~~~  104 (400)
T PF03825_consen   32 RGFSGTQIGILLAVGPLARIVSPP-FWGAIADRFGSAKRILALLSLLSALALLLLAFSSSF-----WWL-FVIMLLFSFF  104 (400)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccH-----HHH-HHHHHHHHHH
Confidence            479999999999999999999966 6688899875 6777777777666655444433221     322 2334444556


Q ss_pred             HHHHHHHHHHHHhhccc
Q 043916           94 SVSIITRLFLLQNRAVE  110 (138)
Q Consensus        94 ~~~~~p~~~~li~~~~p  110 (138)
                      .....|...++..+...
T Consensus       105 ~~p~~pl~dsi~~~~~~  121 (400)
T PF03825_consen  105 FSPTMPLSDSIALSYLG  121 (400)
T ss_pred             HccHHHHHHHHHHHHcc
Confidence            66667777777777765

>PRK11462 putative transporter; Provisional

Probab=97.38  E-value=0.0044  Score=49.71  Aligned_cols=114  Identities=13%  Similarity=0.070  Sum_probs=65.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 043916           19 TKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSII   98 (138)
Q Consensus        19 ~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   98 (138)
                      ....+.++...++..++. ..+.+++.||++.|+.+..+.....+..+++.+...  +. .+.. ....++..++.+...
T Consensus       262 ~~~~~~~l~~~~i~~iig-~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~-~~~~~l~g~~~~~~~  336 (460)
T PRK11462        262 PEVFVAFLTTYCVGNLIG-SALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPM--QA-SITM-FVFIFVIGVLHQLVT  336 (460)
T ss_pred             hHHHHHHHHHHHHHHHHH-HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhch--hH-HHHH-HHHHHHHHHHHHHHH
Confidence            345566777777777777 567899999999999877555444333332222111  11 1111 112233344555555


Q ss_pred             HHHHHHHhhcccc-------hhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           99 TRLFLLQNRAVEQ-------HQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        99 p~~~~li~~~~p~-------~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      +...+++.+..+.       ++.|...+.+....-++.++|+.++|
T Consensus       337 ~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g  382 (460)
T PRK11462        337 PIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIG  382 (460)
T ss_pred             HHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566777777662       22344456655667777777776654

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=97.35  E-value=0.0032  Score=50.21  Aligned_cols=114  Identities=10%  Similarity=0.086  Sum_probs=82.4

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 043916           17 YSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVS   96 (138)
Q Consensus        17 ~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~   96 (138)
                      .+.+-+|++.+..-+.-+.. ..+.|++.||+|+|+.+.++..+..+=...+.+.++.     | .+...-.+.++-..+
T Consensus       256 ~g~~~~G~l~s~~v~~E~~~-m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~-----~-~i~~~klLH~~e~~l  328 (412)
T PF01306_consen  256 QGNQMYGYLWSVQVFLEALM-MFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNP-----W-VISLIKLLHALEFPL  328 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SH-----H-HHHHHHHHHHHHHHH
T ss_pred             cChhHHhHHHHHHHHHHHHH-HHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcch-----H-HHHHHHHHHHHHHHH
Confidence            34566888888877777777 7788999999999999999988887777777666542     2 233444454444456


Q ss_pred             HHHHHHHHHhhcccchhhhhhhhHH-HHHHHHHhhHccCCcC
Q 043916           97 IITRLFLLQNRAVEQHQRGAANGLV-MTVVSLTKTAGPAVRG  137 (138)
Q Consensus        97 ~~p~~~~li~~~~p~~~~G~~~G~~-~s~~sl~r~igP~i~G  137 (138)
                      ...+..-.+++..|++..+++..+. |...+++..+.+.++|
T Consensus       329 ~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G  370 (412)
T PF01306_consen  329 LLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAG  370 (412)
T ss_dssp             HHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            6668888999999999999999885 7777888777666554

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.34  E-value=0.0039  Score=50.77  Aligned_cols=114  Identities=11%  Similarity=-0.002  Sum_probs=78.2

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhh-------hHHHHHHHHHHHHHHHHHHhhhhhhhh-----HHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIG-------PIIITRIAGVLSITLLTSYTYIAMLSG-----FSLA   80 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g-------~~~~~~~~~~~~~~~~~~~p~~~~~~~-----~~~~   80 (138)
                      .|++++   -.|..+.+.+..++. ..++.++=+|..       .-+-+.+|+.+..+++..+.+.....+     ...|
T Consensus       304 ~g~~ip---~~~~qslNp~~ii~l-~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~w  379 (493)
T PRK15462        304 FGYTVP---TAMFQSINAFAVMLC-GVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPL  379 (493)
T ss_pred             cceeeC---HHHHHhHhHHHHHHH-HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHH
Confidence            355544   456678888887776 555555534432       122467788888888877765443221     1234


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHH-HHHhhHc
Q 043916           81 LFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVV-SLTKTAG  132 (138)
Q Consensus        81 ~~l~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~-sl~r~ig  132 (138)
                        ++....+.++|+-+..|...+++++.+|++.||+.+|++.... +++..++
T Consensus       380 --l~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~  430 (493)
T PRK15462        380 --MVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLA  430 (493)
T ss_pred             --HHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence              3456678899999999999999999999999999999995533 5665544

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=97.33  E-value=0.0019  Score=48.16  Aligned_cols=117  Identities=15%  Similarity=0.125  Sum_probs=79.4

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhh--hHHHHHHHHHHHH
Q 043916           11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLS--GFSLALFINCASV   88 (138)
Q Consensus        11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~l~~~~~   88 (138)
                      .+..+|+|.+|+..+-+..-+...+  .++.+.+.|++|++-+..+|......+|..+=....-.  +...|.. .+...
T Consensus        28 Lk~~l~~sq~~l~~l~~~~~~G~~~--G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~-~~~~~  104 (250)
T PF06813_consen   28 LKSRLGYSQSQLNTLSTAGDIGSYF--GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLM-CLFLF  104 (250)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHhhc--cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHH-HHHHH
Confidence            3457999999999988888877765  45779999999999999999999999887664322110  1123433 23333


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhH
Q 043916           89 MKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTA  131 (138)
Q Consensus        89 ~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~i  131 (138)
                      +.+.+..+...+......+..| ++||++.|+.-+...++.++
T Consensus       105 l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai  146 (250)
T PF06813_consen  105 LGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAI  146 (250)
T ss_pred             HHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHH
Confidence            4344444444443333335556 68999999998888777654

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=97.29  E-value=0.0026  Score=51.41  Aligned_cols=92  Identities=18%  Similarity=0.136  Sum_probs=71.1

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916           14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL   93 (138)
Q Consensus        14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~   93 (138)
                      .+|.+..+..+.+...+...+.. ..+.|++.||+|+|+++.++..++.++...+=+...  +. .+ .+.+...+..++
T Consensus       266 ~lg~~~l~~~~~~~~~~~~~l~~-~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~--~~-~~-l~~~~~~i~~~g  340 (467)
T COG2211         266 VLGDPELFAYLLLLASGAGLLIG-LILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPA--GS-VV-LIVVALIIAGVG  340 (467)
T ss_pred             EcCChHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcC--cc-hH-HHHHHHHHHHHH
Confidence            46777888888888888877776 678999999999999999999999998877665541  11 12 233444666788


Q ss_pred             HHHHHHHHHHHHhhccc
Q 043916           94 SVSIITRLFLLQNRAVE  110 (138)
Q Consensus        94 ~~~~~p~~~~li~~~~p  110 (138)
                      .+...+..-+++.+.+.
T Consensus       341 ~~~~~~l~wam~~d~vD  357 (467)
T COG2211         341 TGIANPLPWAMVADTVD  357 (467)
T ss_pred             hhccccccHHHhcchhh
Confidence            88888888889988877

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=97.28  E-value=0.0041  Score=50.45  Aligned_cols=109  Identities=10%  Similarity=0.029  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHhhhhh-HHHHHHHHHHHHHHHHHHhhhhhhhhH---------------H-HHHHHHHH
Q 043916           24 QVLAISGFNLLFSQLTLYPYVERIIGP-IIITRIAGVLSITLLTSYTYIAMLSGF---------------S-LALFINCA   86 (138)
Q Consensus        24 ~~~~~~g~~~~~~q~~~~~~l~~~~g~-~~~~~~~~~~~~~~~~~~p~~~~~~~~---------------~-~~~~l~~~   86 (138)
                      +.+..+.+...+. .++.|++.||+|+ |+++..+..+....+..+.+.++.+++               . .|..+ ..
T Consensus       309 ~~l~~~s~~~~i~-s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~  386 (477)
T TIGR01301       309 FGLMLNSVVLGIT-SIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASAL-IV  386 (477)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHH-HH
Confidence            4455555555555 4578999999995 788899999999888888877653210               0 12222 23


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccc--hhhhhhhhHHHHHHHHHhhHccC
Q 043916           87 SVMKNVLSVSIITRLFLLQNRAVEQ--HQRGAANGLVMTVVSLTKTAGPA  134 (138)
Q Consensus        87 ~~~~~~~~~~~~p~~~~li~~~~p~--~~~G~~~G~~~s~~sl~r~igP~  134 (138)
                      ..+.++.-+..+..=++++++..|+  +++|..+|+.+....+.+.+.-+
T Consensus       387 ~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl  436 (477)
T TIGR01301       387 FAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSL  436 (477)
T ss_pred             HHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHH
Confidence            3333444444444458899999984  67799999999999988876544

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=97.28  E-value=0.017  Score=45.21  Aligned_cols=101  Identities=9%  Similarity=-0.025  Sum_probs=74.9

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916           14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL   93 (138)
Q Consensus        14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~   93 (138)
                      ..|++.+||+.++...-....++ ..+.+.+.||+|+||.-..-..++....+..-.    ++   ...+...+++-++.
T Consensus        63 ~yg~~~~qIa~Lf~~Gf~Ss~i~-g~~~G~laD~~Grk~~cl~~cily~~scl~k~~----~~---~~~L~~GRvlgGia  134 (354)
T PF05631_consen   63 SYGFSEHQIAILFVAGFASSAIF-GTFVGSLADRYGRKKACLLFCILYSLSCLTKHS----SN---YPVLLLGRVLGGIA  134 (354)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc----cc---cHHHHHHHHHHHHH
Confidence            47999999999998888888887 778899999999999888777777766542211    11   23456788888888


Q ss_pred             HHHHHHHHHHHHh-----hcccchhhhhhhhHHH
Q 043916           94 SVSIITRLFLLQN-----RAVEQHQRGAANGLVM  122 (138)
Q Consensus        94 ~~~~~p~~~~li~-----~~~p~~~~G~~~G~~~  122 (138)
                      ....+.+-+++.-     +-.|+|.++.+.+...
T Consensus       135 TSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~t  168 (354)
T PF05631_consen  135 TSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLAT  168 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence            8888888888873     3356677777666443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=97.15  E-value=0.0058  Score=48.18  Aligned_cols=121  Identities=9%  Similarity=-0.013  Sum_probs=63.9

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhH-hhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVE-RIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN   91 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~-~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~   91 (138)
                      +.+|+++.+.|+..........+... +..++. |+.++| ...........+..++......... .+......+.+..
T Consensus       247 ~~~g~s~~~~gl~~~~~~~~~~i~~~-l~~~~~~~~~~~~-~~~~~~~~~~ig~~l~~~~~~~~~~-~~~~~~~~~~l~~  323 (413)
T PRK15403        247 DAGGMTTSQFAWTQVPVFGAVIVANA-IVARFVKDPTEPR-FIWRAVPIQLVGLALLIVGNLLWPH-VWLWSVLGTSLYA  323 (413)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHhccCCchh-HHHHHHHHHHHHHHHHHHHHHHccc-cHHHHHHHHHHHH
Confidence            34789999999988777766666534 445544 444443 3222222222222221111100001 1212234555667


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      .+.+...|....... ...++.+|+++++........-.+++..+|
T Consensus       324 ~G~~~~~p~~~~~al-~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g  368 (413)
T PRK15403        324 FGIGLIFPTLFRFTL-FSNNLPKGTVSASLNMVILMVMAVSVEIGR  368 (413)
T ss_pred             HHHHHHhHHHHHHHh-ccCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            787888777764322 122334788888887777776666655443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=97.13  E-value=9e-05  Score=58.89  Aligned_cols=123  Identities=11%  Similarity=0.092  Sum_probs=65.0

Q ss_pred             EeeeecCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHH----HHHHH--HHHhhhhhhhh
Q 043916            3 SLWAVSLRKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVL----SITLL--TSYTYIAMLSG   76 (138)
Q Consensus         3 pl~~~~~~~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~----~~~~~--~~~p~~~~~~~   76 (138)
                      |+|..+.     .|+|.+|+|.+++.+.+...+.|. +++.+.||+|.||-.......    .++.+  +..|+...  +
T Consensus        31 ~iWL~~~-----~GLs~~~iG~i~s~~~~~~l~~qp-~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~--n  102 (412)
T PF01306_consen   31 PIWLTQV-----AGLSGTEIGIIFSAGSLFALLAQP-VYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQS--N  102 (412)
T ss_dssp             HHHHHHH-----H---HHHHHHHHHHHHHHHHHTHH-HHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHT--T
T ss_pred             HHHHccc-----cCCCHHHHHHHHHHHHHHHHHHHH-hHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence            4555543     799999999999999999999987 779999999977654433221    12222  12233221  1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           77 FSLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        77 ~~~~~~l~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                        .|..........++.-....|...+++.+.+.+  .+-=-|=.-.-.|+|-+++..++|
T Consensus       103 --~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr~--~~feYG~~R~wGSig~ai~s~~~G  159 (412)
T PF01306_consen  103 --FWLGAIIGGIYLGLVFNAGVPLSEAYAERVSRR--NGFEYGRARMWGSIGFAIASLLAG  159 (412)
T ss_dssp             ---HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHHH--HSS-HHHHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHcccchHHHHHHHHHHHH--hcCCcchHHHHhhHHHHHHHHHhh
Confidence              121111111111222334456777777776642  222223333445566555555444

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=97.11  E-value=0.00054  Score=54.03  Aligned_cols=118  Identities=13%  Similarity=-0.007  Sum_probs=82.1

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHh----hhhhHHHHHH-HHHHHHHHHHHHhhh-h-hhhh--HHHHH
Q 043916           11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVER----IIGPIIITRI-AGVLSITLLTSYTYI-A-MLSG--FSLAL   81 (138)
Q Consensus        11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~----~~g~~~~~~~-~~~~~~~~~~~~p~~-~-~~~~--~~~~~   81 (138)
                      ..+-+|.++..+|.++....+..++.+. +++.+.|    |+|+||-+.. +.....+.+.++... . ....  ...|.
T Consensus        28 ~~~~~gl~~~~~g~i~~~~~i~dai~dp-~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~  106 (428)
T PF13347_consen   28 YTDVLGLSPALAGLILLVGRIWDAITDP-LIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWL  106 (428)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHhhhhcCC-cEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHH
Confidence            3456899999999999999999999965 7788888    8998886664 556666666555433 1 1111  12233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-hhhhhhhhHHHHHHHHHhhH
Q 043916           82 FINCASVMKNVLSVSIITRLFLLQNRAVEQ-HQRGAANGLVMTVVSLTKTA  131 (138)
Q Consensus        82 ~l~~~~~~~~~~~~~~~p~~~~li~~~~p~-~~~G~~~G~~~s~~sl~r~i  131 (138)
                      .  ....+..++..+..-...++..+..++ |||.+..+..+....+|..+
T Consensus       107 ~--~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l  155 (428)
T PF13347_consen  107 F--VFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLL  155 (428)
T ss_pred             H--HHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHH
Confidence            2  222233556666666688899999885 89999999988877777653

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.04  E-value=0.0014  Score=53.75  Aligned_cols=95  Identities=14%  Similarity=0.199  Sum_probs=78.0

Q ss_pred             HhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhh
Q 043916           38 LTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAA  117 (138)
Q Consensus        38 ~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~  117 (138)
                      .+...++.+++|+.++...++.....=++.+.++.+     .|..+ -.-+++.+--+..+.++.+.+++.+||+.+.++
T Consensus       423 ~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n-----~W~vL-Pieilqgit~aliWaa~~sY~s~vaPp~l~at~  496 (618)
T KOG3762|consen  423 YFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQN-----PWMVL-PIEILQGITHALIWAAIISYASHVAPPGLRATA  496 (618)
T ss_pred             HHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcC-----chhee-eHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHH
Confidence            445569999999999999999999888887766654     25433 455688888889999999999999999999999


Q ss_pred             hhHHHHH-HHHHhhHccCCcCC
Q 043916          118 NGLVMTV-VSLTKTAGPAVRGA  138 (138)
Q Consensus       118 ~G~~~s~-~sl~r~igP~i~G~  138 (138)
                      +|+.|-. -.+|+.+|.+|||.
T Consensus       497 Q~l~~g~f~GlG~g~GslIGG~  518 (618)
T KOG3762|consen  497 QGLLQGIFHGLGKGLGSLIGGF  518 (618)
T ss_pred             HHHHHHHhcccCcchhhhhhhh
Confidence            9998765 46889999988873

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.02  E-value=0.0013  Score=52.28  Aligned_cols=126  Identities=17%  Similarity=0.135  Sum_probs=83.6

Q ss_pred             CEEeeeecCCCCCCCCCChhH--HHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHH-HHHHHHHHHHHHhhhhhhhhH
Q 043916            1 IFSLWAVSLRKYGGLSYSTKN--VGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRI-AGVLSITLLTSYTYIAMLSGF   77 (138)
Q Consensus         1 ~~pl~~~~~~~~gglg~s~~~--ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~-~~~~~~~~~~~~p~~~~~~~~   77 (138)
                      +||+|..+....+|.+....+  .|...++.++..++. ..+.+.+.|+-|+||-+.. ...+-.+....+-++..  + 
T Consensus        37 ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~L-apiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~--~-  112 (438)
T COG2270          37 IFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALL-APILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPP--G-  112 (438)
T ss_pred             hhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHH-HHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCC--C-
Confidence            467777777677666554443  788888999988888 6688899999997775544 33333333333333332  1 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhh
Q 043916           78 SLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKT  130 (138)
Q Consensus        78 ~~~~~l~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~  130 (138)
                      ..|......+.+..++...+..-..+++.+..++++.|++.|..-....++..
T Consensus       113 s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~  165 (438)
T COG2270         113 SYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSV  165 (438)
T ss_pred             chHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccCcccccccccccccch
Confidence            12333445555666677777777899999999999999988877655555443

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=96.84  E-value=0.0045  Score=50.27  Aligned_cols=119  Identities=15%  Similarity=0.044  Sum_probs=89.8

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhh-HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916           14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGP-IIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV   92 (138)
Q Consensus        14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~   92 (138)
                      +.+.+.+.-|++.+...+..++. -+.+.+..+|.+. |+-+..+..+..++-+++..+...+....|. +.+++++.++
T Consensus        65 D~~A~~~ffG~viaa~slg~~i~-~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~-mL~~R~l~Gv  142 (488)
T KOG2325|consen   65 DPTATATFFGLVIAASSLGHAIF-SLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYL-MLVARILTGV  142 (488)
T ss_pred             CCCCCcchhhHHHHHHHHHHHhc-chhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHH-HHHHHHHcCc
Confidence            47889999999999999999998 5578888888775 7788888888888888885555544333443 4467777676


Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCC
Q 043916           93 LSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAV  135 (138)
Q Consensus        93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i  135 (138)
                      +.+ .....-+.++.....++|-++.....-...++.++||.+
T Consensus       143 g~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~  184 (488)
T KOG2325|consen  143 GVG-NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTI  184 (488)
T ss_pred             Ccc-cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHH
Confidence            644 234578888888778888888888777777788888765

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=96.63  E-value=0.029  Score=44.56  Aligned_cols=123  Identities=13%  Similarity=0.032  Sum_probs=80.9

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhh-----hHHHHHH-HHHHHHHHHHHHhhhhhhh-h--------H
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIG-----PIIITRI-AGVLSITLLTSYTYIAMLS-G--------F   77 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g-----~~~~~~~-~~~~~~~~~~~~p~~~~~~-~--------~   77 (138)
                      .+++....-.+.+.+.--+..- .+. .++..+|+.+     +|.-|++ +..........+|+....- .        .
T Consensus         8 vEL~vpA~lv~~lval~~~~ap-~R~-~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~   85 (403)
T PF03209_consen    8 VELGVPAWLVALLVALHYLVAP-LRV-WFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPF   85 (403)
T ss_pred             HHhccHHHHHHHHHHHHHHHHH-HHH-HhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccccc
Confidence            3455666655655555433333 233 4566778777     6665555 5555566667777655432 1        1


Q ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           78 SLAL-FINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        78 ~~~~-~l~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      +.|. .......+..++...+..+..+++.+.+|||+|+++.++..+..=+|-+++..+.|
T Consensus        86 ~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g  146 (403)
T PF03209_consen   86 WLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFG  146 (403)
T ss_pred             HHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            3332 33345556677778888899999999999999999999999998888887765443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF12832 MFS_1_like: MFS_1 like family

Probab=96.60  E-value=0.008  Score=36.70  Aligned_cols=48  Identities=15%  Similarity=0.261  Sum_probs=40.9

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLS   61 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~   61 (138)
                      ...|+|+.|+|.+.+..-+...+. -.+.+++.||++++|........+
T Consensus        28 ~~~Gl~~~~iGil~~i~~~~~~~~-~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen   28 KQLGLSPSQIGILSAIRPLIRFLA-PPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             hhcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCccHHHHHHHHHH
Confidence            357999999999999999999998 458899999999999877665543

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=96.53  E-value=0.0084  Score=48.68  Aligned_cols=94  Identities=9%  Similarity=0.037  Sum_probs=73.4

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhh-hhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916           14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERI-IGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV   92 (138)
Q Consensus        14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~-~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~   92 (138)
                      |+|+|.++.--+++.++...-++ ..+-+++.|| +|+||.+.++-.+..++.+.+...+.. +   ...+...+.+-.+
T Consensus        55 gLg~~~~~A~~l~~~y~slVY~t-~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~-~---~~gl~i~L~~I~i  129 (498)
T COG3104          55 GLGFDETHATGLFSAYGSLVYLT-PIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVS-G---PGGLYIGLALIIV  129 (498)
T ss_pred             cCCcChHhhHHHHHHHHHHHHHH-HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccc-c---ccHHHHHHHHHHh
Confidence            39999999888888888777776 5588999998 689999999999999999887765411 1   1123344555568


Q ss_pred             HHHHHHHHHHHHHhhcccch
Q 043916           93 LSVSIITRLFLLQNRAVEQH  112 (138)
Q Consensus        93 ~~~~~~p~~~~li~~~~p~~  112 (138)
                      |.+..-|...+++.+..|++
T Consensus       130 G~Gl~K~NiS~llg~ly~~~  149 (498)
T COG3104         130 GTGLFKPNISSLLGELYPKD  149 (498)
T ss_pred             ccccccccHHHHHHHhcCCC
Confidence            99999999999999999863

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=96.49  E-value=0.023  Score=45.98  Aligned_cols=104  Identities=11%  Similarity=0.013  Sum_probs=60.4

Q ss_pred             HHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHH-HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043916           30 GFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTS-YTYIAMLSGFSLALFINCASVMKNVLSVSIITRLFLLQNRA  108 (138)
Q Consensus        30 g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~li~~~  108 (138)
                      .+...+. -.+.+++.||+|++|+..++.....+.... +...........+... .......+..+....++.-++.+.
T Consensus       296 ~l~~~l~-rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~-~~~~~l~~~~G~gngsvfk~ip~~  373 (462)
T PRK15034        296 PFIGAIA-RSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFY-AVFMGLFLTAGLGSGSTFQMIAVI  373 (462)
T ss_pred             HHHHHHH-HHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHH-HHHHHHHHHhcccchHHHHhhHHH
Confidence            3444444 347799999999999998887755444321 1111110001112211 111222344455555677777776


Q ss_pred             ccc---------------------hhhhhhhhHHHHHHHHHhhHccCC
Q 043916          109 VEQ---------------------HQRGAANGLVMTVVSLTKTAGPAV  135 (138)
Q Consensus       109 ~p~---------------------~~~G~~~G~~~s~~sl~r~igP~i  135 (138)
                      .|+                     .+-|.+.|+.....++|-.+-|.+
T Consensus       374 f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~  421 (462)
T PRK15034        374 FRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQA  421 (462)
T ss_pred             HhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHH
Confidence            663                     268899999998888877777643

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=96.44  E-value=0.015  Score=36.32  Aligned_cols=62  Identities=13%  Similarity=0.067  Sum_probs=53.9

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 043916           11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAM   73 (138)
Q Consensus        11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~   73 (138)
                      ...+.++|.+|.|++-+.+-+.+.+. .....++.++.++++.++.++....+.+..+.+.+.
T Consensus        18 M~~~~~ls~~~ag~lasaNy~GYL~G-Al~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~   79 (85)
T PF06779_consen   18 MQADGGLSLSQAGWLASANYLGYLVG-ALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHS   79 (85)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45678999999999999999999998 667788888888999999999999988888887654

Note that many members are hypothetical proteins.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=96.36  E-value=0.021  Score=46.25  Aligned_cols=118  Identities=15%  Similarity=0.113  Sum_probs=74.3

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhh---------HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGP---------IIITRIAGVLSITLLTSYTYIAMLSGFSLALFI   83 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~---------~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l   83 (138)
                      +-+|+|.++.|+.-+.--+.+.++ -++.+.+.||+..         |-.-.++....++.++.+++......   +..+
T Consensus       287 ~VL~f~v~~~G~~salP~l~~~~~-k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~---~~a~  362 (466)
T KOG2532|consen  287 EVLGFDVRETGFLSALPFLAMAIV-KFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHR---LLAV  362 (466)
T ss_pred             HHhCCChhhhhHHHHHHHHHHHHH-HHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcc---hHHH
Confidence            449999999999999988888888 6688888888755         12223344444555555555443211   2221


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcc-cchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           84 NCASVMKNVLSVSIITRLFLLQNRAV-EQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        84 ~~~~~~~~~~~~~~~p~~~~li~~~~-p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                       ..+.+-....+...+...  .|..- .|+.-|.++|+.|...+++..++|.+.|
T Consensus       363 -~~l~~~~~~~g~~~~Gf~--~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg  414 (466)
T KOG2532|consen  363 -ILLTIAIGLSGFNISGFY--KNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVG  414 (466)
T ss_pred             -HHHHHHHHHcccchhhhH--hhhhhccchHHHHHHHHHHHHHHHHHHHHHHhee
Confidence             111121222232322222  22222 4679999999999999999999999876

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.33  E-value=0.00051  Score=56.42  Aligned_cols=126  Identities=11%  Similarity=0.032  Sum_probs=2.6

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhH-------------
Q 043916           11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGF-------------   77 (138)
Q Consensus        11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~-------------   77 (138)
                      ....|+++++|.|++.+.+-+...++ ..+..+...|..+-|.+-++.++.+++.+++.+-+++.+.             
T Consensus        29 iErRF~l~S~~~G~i~s~~di~~~~~-~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~  107 (539)
T PF03137_consen   29 IERRFGLSSSQSGLISSSYDIGSLVV-VLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNS  107 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccc
Confidence            34579999999999999999999998 6667788888888888888888888888776654443210             


Q ss_pred             -------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHH
Q 043916           78 -------------------------------SLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVS  126 (138)
Q Consensus        78 -------------------------------~~~~~l~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~s  126 (138)
                                                     ..+..+.+..++.++|+...+|.-.+.+-+.+++++-+.-.|+..+...
T Consensus       108 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~  187 (539)
T PF03137_consen  108 SISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSI  187 (539)
T ss_dssp             --------------------------------------------SSS---------------------------------
T ss_pred             ccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhh
Confidence                                           0123455677788888899999999999999999999999999999888


Q ss_pred             HHhhHccCCcC
Q 043916          127 LTKTAGPAVRG  137 (138)
Q Consensus       127 l~r~igP~i~G  137 (138)
                      +|.++|=++||
T Consensus       188 lGPa~Gf~lg~  198 (539)
T PF03137_consen  188 LGPALGFLLGS  198 (539)
T ss_dssp             -----------
T ss_pred             ccHHHHHHHHH
Confidence            88888877776

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=96.31  E-value=0.005  Score=48.91  Aligned_cols=116  Identities=15%  Similarity=0.047  Sum_probs=77.1

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhh--HHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSG--FSLALFINCASVMK   90 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~~~l~~~~~~~   90 (138)
                      ..++.|+.+.|..-+...+...+.-. .-+++.||+|.+|+........++......+.....+  ...+... ......
T Consensus       247 ~~fg~~~~~Ag~~a~~f~~~g~l~Rp-~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~l~l  324 (417)
T COG2223         247 TQFGLSPVTAGLIAFLFPLIGALARP-LGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFV-AVFLAL  324 (417)
T ss_pred             HhcCCChhhHHHHHHHHHHHHHHHHh-ccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHH-HHHHHH
Confidence            44999999999888888888888744 7789999999999998888877776655443321110  1111111 112222


Q ss_pred             HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhH
Q 043916           91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTA  131 (138)
Q Consensus        91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~i  131 (138)
                      .+..+....++..++....| +|-|.++|+......+|-..
T Consensus       325 ~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf~  364 (417)
T COG2223         325 FVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLGGFF  364 (417)
T ss_pred             HHHhccCcchheeechHHHH-hhhhHHHHHHHHhccccccc
Confidence            34444444566777776665 48999999988877776533

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=96.26  E-value=0.0044  Score=49.17  Aligned_cols=91  Identities=7%  Similarity=0.013  Sum_probs=62.9

Q ss_pred             hhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhh
Q 043916           40 LYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANG  119 (138)
Q Consensus        40 ~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G  119 (138)
                      +..+++||+|+|+....++.++.+...+.  ......+ ...+  ..... ..+....+...+...-+..|...|++..|
T Consensus       400 It~~iverlGRKkTMal~l~~f~iflfll--~~c~~rn-~~tv--llf~a-rafisg~fqvaYvYtPEVyPTavRatgvG  473 (528)
T KOG0253|consen  400 ITGVIVERLGRKKTMALSLILFGIFLFLL--TTCKTRN-AYTV--LLFTA-RAFISGAFQVAYVYTPEVYPTAVRATGVG  473 (528)
T ss_pred             HHHHHHHHhcchhHHHHHHHHHHHHHHHH--HHhcCcc-hhHH--HHHHH-HHHHhchheEEEEecCcccchhhhhcchh
Confidence            45788999999999999998887765433  2221111 1111  11122 23444455667788888899999999999


Q ss_pred             HHHHHHHHHhhHccCCc
Q 043916          120 LVMTVVSLTKTAGPAVR  136 (138)
Q Consensus       120 ~~~s~~sl~r~igP~i~  136 (138)
                      ...++.-++.++.|+++
T Consensus       474 tcSsmaRIggI~~p~iA  490 (528)
T KOG0253|consen  474 TCSSMARIGGIFSPVIA  490 (528)
T ss_pred             hhhhHHhhhhhhhhHHH
Confidence            99999999999999654

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=95.76  E-value=0.096  Score=41.89  Aligned_cols=125  Identities=12%  Similarity=0.033  Sum_probs=80.4

Q ss_pred             CCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhh----hHHHHHH-HHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 043916            9 LRKYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIG----PIIITRI-AGVLSITLLTSYTYIAMLSGFSLALFI   83 (138)
Q Consensus         9 ~~~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g----~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~l   83 (138)
                      ++.++.+|+++.|+....+...+...+=  ++++.+.|.+.    +||-|.+ +..+.......+......... .. ..
T Consensus        14 ~~l~~~l~ls~~~~~~~~~~~~lPw~~K--p~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s-~~-~~   89 (433)
T PF03092_consen   14 PFLKDDLGLSPAQLQRLSSLASLPWSIK--PLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESS-AA-IA   89 (433)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHhCchHHh--hhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccch-hh-hH
Confidence            3445679999999999999988888763  47788999874    4555444 444332333323222221111 11 12


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccc--chhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           84 NCASVMKNVLSVSIITRLFLLQNRAVE--QHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        84 ~~~~~~~~~~~~~~~p~~~~li~~~~p--~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      ...+.+.+++.....-...+++.+.+.  |+++|..+.......++|..++-.++|
T Consensus        90 ~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G  145 (433)
T PF03092_consen   90 VVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSG  145 (433)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhh
Confidence            234456677888888888888888875  345788888877777788777766655

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=95.75  E-value=0.45  Score=38.75  Aligned_cols=106  Identities=11%  Similarity=-0.077  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHH-HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043916           21 NVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSI-TLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIIT   99 (138)
Q Consensus        21 ~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p   99 (138)
                      -.++..++.++..++. .++.+.+.|+-+.||.+...+.... +....+-+.  -++.  |.......++-.++......
T Consensus        71 ~~~~~~sis~l~~all-~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v--~~~~--~~~~~~l~iia~v~~~~~~v  145 (477)
T PF11700_consen   71 LWLYANSISGLLQALL-APFLGAIADYGGRRKRFLLIFTLLGVLATALLWFV--SPGQ--WWLALVLFIIANVGYEASNV  145 (477)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHh--Ccch--HHHHHHHHHHHHHHHHHHHH
Confidence            3567778888888877 6677889999888876665544333 333333332  1222  22222333444556666666


Q ss_pred             HHHHHHhhcccchhh--------------------------hhhhhHHHHHHHHHhhH
Q 043916          100 RLFLLQNRAVEQHQR--------------------------GAANGLVMTVVSLTKTA  131 (138)
Q Consensus       100 ~~~~li~~~~p~~~~--------------------------G~~~G~~~s~~sl~r~i  131 (138)
                      -..+++-+.+++|++                          +++.|...+...+|..+
T Consensus       146 fyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v  203 (477)
T PF11700_consen  146 FYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLV  203 (477)
T ss_pred             HHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHH
Confidence            778888888888877                          99999998888887655

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=95.58  E-value=0.31  Score=39.87  Aligned_cols=115  Identities=11%  Similarity=0.055  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhHhhhhhH-------HHHHHHHHHHHHHHHHHhhhhhhhh-----HHHHHHHHHHHH
Q 043916           21 NVGQVLAISGFNLLFSQLTLYPYVERIIGPI-------IITRIAGVLSITLLTSYTYIAMLSG-----FSLALFINCASV   88 (138)
Q Consensus        21 ~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~-------~~~~~~~~~~~~~~~~~p~~~~~~~-----~~~~~~l~~~~~   88 (138)
                      .-++..+.+-+..+++ ..++.++..+++++       .-+-+++.+...+++.+.......+     ...|. ++...+
T Consensus       325 p~~~fQslNp~~Iii~-~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~-lil~y~  402 (498)
T COG3104         325 PPAWFQSLNPFFIILF-SPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWW-LVLSYV  402 (498)
T ss_pred             CHHHHHhhCHHHHHHH-HHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHH-HHHHHH
Confidence            3456778888888877 66777777664433       4566677777777777766522111     12333 335677


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           89 MKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        89 ~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      ++.+++-+..|.-.+.+.+.+|+.-.+.+++++-..++.+..++-.+++
T Consensus       403 l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~  451 (498)
T COG3104         403 LQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAG  451 (498)
T ss_pred             HHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence            8899999999999999999999999999999999999998888765554

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=95.40  E-value=0.37  Score=39.12  Aligned_cols=103  Identities=11%  Similarity=0.016  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhh-------HHHHHHHHHHHHHHHHHHHHHH
Q 043916           26 LAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSG-------FSLALFINCASVMKNVLSVSII   98 (138)
Q Consensus        26 ~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~   98 (138)
                      ....++...+. ..+...+.||+|+|+++..+........+++........       ...|..+...............
T Consensus       335 ~~~~~~v~~~~-t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g  413 (513)
T KOG0254|consen  335 SIILGVVNFLG-TLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWG  413 (513)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccc
Confidence            33444444444 334478999999999999999999888887765543321       1123333233223233333333


Q ss_pred             HHHHHHHhhcccchhhhhhhhHHHHHHHHHh
Q 043916           99 TRLFLLQNRAVEQHQRGAANGLVMTVVSLTK  129 (138)
Q Consensus        99 p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r  129 (138)
                      |....+.++..|.+.|++..++..+.+.+..
T Consensus       414 ~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~  444 (513)
T KOG0254|consen  414 PVPWVIVSEIFPLRLRSKGASLAVAVNWLWN  444 (513)
T ss_pred             cchhhhhhccCcHhHHhhhHHHHHHHHHHHH
Confidence            4455688999999999999999888776654

>TIGR01272 gluP glucose/galactose transporter

Probab=95.37  E-value=0.028  Score=42.82  Aligned_cols=54  Identities=11%  Similarity=-0.076  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           84 NCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        84 ~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      ....++...|.++..++.+.++.+..|+|++.+.+++.|+..++|-.+||.+++
T Consensus        14 l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~   67 (310)
T TIGR01272        14 LGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGG   67 (310)
T ss_pred             HHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            355667788899999999999999999999999999999999999999999875

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=95.29  E-value=1.3  Score=36.13  Aligned_cols=119  Identities=7%  Similarity=0.047  Sum_probs=83.4

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhh-------------------
Q 043916           16 SYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSG-------------------   76 (138)
Q Consensus        16 g~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~-------------------   76 (138)
                      +-+.+++.++.+..-+.+.+.-..++.++.+|+++++++......+...+.++.+.-....                   
T Consensus        39 ~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~  118 (472)
T TIGR00769        39 GSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPG  118 (472)
T ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchh
Confidence            4456889999888877766664668999999999999999988877777766655421100                   


Q ss_pred             H-------HHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCC
Q 043916           77 F-------SLALFINCASVMKNVLSVSIIT-RLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAV  135 (138)
Q Consensus        77 ~-------~~~~~l~~~~~~~~~~~~~~~p-~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i  135 (138)
                      .       ..|..- ...+...+.+....+ ..-...|+..++||-.|..++.....+++-.+||.+
T Consensus       119 ~~~~i~~~~~W~~~-~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~  184 (472)
T TIGR00769       119 FMGFIAILRIWSFA-LFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRT  184 (472)
T ss_pred             hHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0       012211 122233344444444 567888999999999999999999999988888754

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=95.08  E-value=0.27  Score=41.17  Aligned_cols=110  Identities=16%  Similarity=0.173  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHH-HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043916           21 NVGQVLAISGFNLLFSQLTLYPYVERIIGPIIIT-RIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIIT   99 (138)
Q Consensus        21 ~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p   99 (138)
                      +.++.....++...+.+ .+.+.+.++.++.|.. .++..+...+.-++..... .+...+.   ...++.+++.+....
T Consensus       350 ~~~~~s~~~~fg~~~g~-~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~-~n~~~~i---~~~~l~g~giG~~~~  424 (599)
T PF06609_consen  350 EIGWISSPVGFGSCAGA-VILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRP-DNKNAAI---AFLVLAGFGIGGILV  424 (599)
T ss_pred             eeehhhhhHHHHHHHHH-HHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccC-CCcchHH---HHHHHHHHhHHHHHH
Confidence            56777777777777764 4667777777766655 3454444443344332211 1111121   223344556555555


Q ss_pred             HHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCC
Q 043916          100 RLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAV  135 (138)
Q Consensus       100 ~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i  135 (138)
                      .......-.+|+|+.|++.|+..+.-++|.++|..+
T Consensus       425 ~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aI  460 (599)
T PF06609_consen  425 PAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAI  460 (599)
T ss_pred             HHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHH
Confidence            567777888999999999999999999998887543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=94.86  E-value=0.48  Score=38.17  Aligned_cols=114  Identities=13%  Similarity=-0.025  Sum_probs=71.6

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhh--hHHHHHH-HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916           15 LSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIG--PIIITRI-AGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN   91 (138)
Q Consensus        15 lg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g--~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~   91 (138)
                      .|+|..+.++..+.+-...+.. ..+.+++.||+-  +|....+ ..+...+..+.+....+.  +  +..  ....+..
T Consensus       283 k~~s~~~a~~a~~lfE~agl~G-~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~--~--~~l--~~~~l~~  355 (448)
T COG2271         283 KGFSLVKANWAISLFEVAGLPG-TLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNG--S--YLL--DAILLFI  355 (448)
T ss_pred             cCCCHHHHHHHHHHHHHHhhHH-HHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCc--c--HHH--HHHHHHH
Confidence            7899999999999999999988 668899999964  4433322 222222322333322221  1  111  1122334


Q ss_pred             HHHHHHHHH--HHHHHhhcccchhhhhhhhHHHHHHHH-HhhHccCC
Q 043916           92 VLSVSIITR--LFLLQNRAVEQHQRGAANGLVMTVVSL-TKTAGPAV  135 (138)
Q Consensus        92 ~~~~~~~p~--~~~li~~~~p~~~~G~~~G~~~s~~sl-~r~igP~i  135 (138)
                      +|.....|.  +-....+.+|++.-|++.|+...+..+ |.+.+-..
T Consensus       356 iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~  402 (448)
T COG2271         356 IGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLP  402 (448)
T ss_pred             HHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCc
Confidence            455555563  233446779999999999999999999 66665443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=94.61  E-value=0.19  Score=40.26  Aligned_cols=118  Identities=12%  Similarity=0.141  Sum_probs=78.7

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhh-hh------hhHHHHHHHHHH
Q 043916           14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIA-ML------SGFSLALFINCA   86 (138)
Q Consensus        14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~-~~------~~~~~~~~l~~~   86 (138)
                      |.|+|+...|.+-....+..++. ..++.+.-++..-|+++.+..++..+..+.--... ..      ++.  |..+.-.
T Consensus       249 gp~fs~~f~~~~~~vg~~~~l~g-~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~--~f~lgd~  325 (433)
T PF03092_consen  249 GPHFSPSFYGTLSIVGSIASLLG-ILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQ--WFALGDT  325 (433)
T ss_pred             ccccCHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCe--EEEEEhH
Confidence            77799999999996666666665 77888888888888888877776654433211110 00      011  2111112


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCC
Q 043916           87 SVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAV  135 (138)
Q Consensus        87 ~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i  135 (138)
                       .+..+.+.+.+=....++.+.+|+..-|++.++..|...+|..++-.+
T Consensus       326 -~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~l  373 (433)
T PF03092_consen  326 -ILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTL  373 (433)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence             223334444443478899999999999999999999999988776443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=94.60  E-value=1.3  Score=35.84  Aligned_cols=109  Identities=15%  Similarity=0.042  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043916           23 GQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITRLF  102 (138)
Q Consensus        23 g~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~  102 (138)
                      .......+...... .+.-....+++|+|.....+.....++++...+.......  |....... +-..+.+..+-...
T Consensus       353 ~~~~~~~~~~~~p~-~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~  428 (521)
T KOG0255|consen  353 YLNFTLSGLVELPA-YFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGG--WLHWILPL-LGKFFIGSAFNLIF  428 (521)
T ss_pred             HHHHHHHHHHHhhH-HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchh--HHHHHHHH-HHHHHHHHHHHHHH
Confidence            33444444433333 3334578889999999999999888888877776543221  11111222 22334455555668


Q ss_pred             HHHhhcccchhhhhhhhHHHHHHHHHhhHccCC
Q 043916          103 LLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAV  135 (138)
Q Consensus       103 ~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i  135 (138)
                      ...++..|...|..+.|.......++-+++|.+
T Consensus       429 ~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~  461 (521)
T KOG0255|consen  429 LYSAELIPTVVRNTAVGAISAAARLGSILAPLF  461 (521)
T ss_pred             HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888999999999999999999999999988864

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=93.91  E-value=0.32  Score=39.53  Aligned_cols=100  Identities=17%  Similarity=0.183  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043916           28 ISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITRLFLLQNR  107 (138)
Q Consensus        28 ~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~li~~  107 (138)
                      ..|+...+. ....+.+.||+|+|..+...+....+.-..+-+.    +  -|..+  ..-+.. +.+..+....+.+++
T Consensus        70 ~~~~~~~i~-s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~----~--~~~~~--~~~l~g-~~~~~~s~~~a~vad  139 (463)
T KOG2816|consen   70 TAGLLTLIS-SPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ----G--YWFFL--LLGLSG-GFSAIFSVGFAYVAD  139 (463)
T ss_pred             hhHHHHHHH-HhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH----H--HHHhh--hccccc-chhhhhhhhhhheee
Confidence            335555554 7788999999999998887766543322222111    1  12221  111211 334555678888999


Q ss_pred             cccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916          108 AVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus       108 ~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      ....|+|-...|+....-..+..++|.+++
T Consensus       140 is~~~~R~~~~gll~~~~~~~~~~~p~~~~  169 (463)
T KOG2816|consen  140 ISSEEERSSSIGLLSGTFGAGLVIGPALGG  169 (463)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            999999999999999999999999998875

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=93.76  E-value=2.3  Score=34.15  Aligned_cols=114  Identities=4%  Similarity=-0.015  Sum_probs=81.9

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 043916           15 LSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLS   94 (138)
Q Consensus        15 lg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~   94 (138)
                      -|++.+|+---.-..+.-.-+.+.++.-.+.|.++.|.+++++.+.......++-+...+.    +  +-+.-+..++..
T Consensus        35 kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~----~--mq~~q~~yg~~~  108 (412)
T PF01770_consen   35 KNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVL----A--MQLMQFFYGLAT  108 (412)
T ss_pred             cCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHH----H--HHHHHHHHHHHH
Confidence            7999999886555555555555577788999999999999999888888777766655432    1  112233333333


Q ss_pred             HHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCC
Q 043916           95 VSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAV  135 (138)
Q Consensus        95 ~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i  135 (138)
                      +. -.+..+.+-..+|+++--++-+...+..-.|+.+|-.+
T Consensus       109 a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~l  148 (412)
T PF01770_consen  109 AA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLL  148 (412)
T ss_pred             HH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            32 34567888888899999999999999999998887554

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=93.68  E-value=0.46  Score=37.99  Aligned_cols=111  Identities=11%  Similarity=0.143  Sum_probs=73.6

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 043916           15 LSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLS   94 (138)
Q Consensus        15 lg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~   94 (138)
                      .|.+.+|-....+.+=...++.- ++..++.+|+.+.|.+.+.........+...+++..     +  ......+.+...
T Consensus       267 ~g~~~~~aa~~~s~~~~~~~vGR-Fig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~-----v--~~~~l~~ig~F~  338 (422)
T COG0738         267 LGLNEQQAAYYLSFFWVGFMVGR-FIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGV-----V--ALYALFLIGLFN  338 (422)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcCh-----H--HHHHHHHHHHHh
Confidence            67888888888888877777774 466788889999998888776555555444444331     1  123445667889


Q ss_pred             HHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCC
Q 043916           95 VSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAV  135 (138)
Q Consensus        95 ~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i  135 (138)
                      +..+|.+.++..+..|+  ..+.-|..-.....|-++-|.+
T Consensus       339 simfPTIfslal~~l~~--~ts~~s~~l~maivGGAiiP~l  377 (422)
T COG0738         339 SIMFPTIFSLALKNLGE--HTSVGSGLLVMAIVGGAIIPPL  377 (422)
T ss_pred             HHHHHHHHHHHHhccCc--cccccceeeeeheecchHHHHH
Confidence            99999999999999983  2222222223344444444443

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=93.26  E-value=1.3  Score=36.10  Aligned_cols=115  Identities=11%  Similarity=-0.118  Sum_probs=67.8

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhh--hHHHH-HHHHHHHHHHHHHH
Q 043916           18 STKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLS--GFSLA-LFINCASVMKNVLS   94 (138)
Q Consensus        18 s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~-~~l~~~~~~~~~~~   94 (138)
                      +.+..-|...++.+..+.+ .+..=|+.|++|.|....++...-.++-.+=-.. ..+  ....| .+......+.....
T Consensus        77 s~~~~~wlsmIym~v~vp~-gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~is-s~p~v~~~f~~~l~~~Gq~iaa~Aq  154 (480)
T KOG2563|consen   77 SSSAADWLSMIYMVVSVPF-GFAAMWILDKFGLRTALLLGTVLNGIGAWIRLIS-SLPFVPPLFRRPLTHTGQSIAAAAQ  154 (480)
T ss_pred             chHHHHHHHHHHHHHHHHH-hhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhc-cCccccccchhhhhHHhHHHHHHhh
Confidence            4555667777888888887 7777899999999999998888766654321111 111  01123 11112222222222


Q ss_pred             HHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccC
Q 043916           95 VSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPA  134 (138)
Q Consensus        95 ~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~  134 (138)
                      .+..-.=.-+..-+.|++||.+++-+..-.+.+|-++|-+
T Consensus       155 ~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~l  194 (480)
T KOG2563|consen  155 PFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFL  194 (480)
T ss_pred             hHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhh
Confidence            2222222344566788999999998876665566555533

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=92.97  E-value=0.55  Score=38.23  Aligned_cols=117  Identities=9%  Similarity=0.017  Sum_probs=72.0

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHh----hhhhHHHHHHHH-HHHHHHHHHHhhhhhhh--hHHHHHHHH
Q 043916           12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVER----IIGPIIITRIAG-VLSITLLTSYTYIAMLS--GFSLALFIN   84 (138)
Q Consensus        12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~----~~g~~~~~~~~~-~~~~~~~~~~p~~~~~~--~~~~~~~l~   84 (138)
                      .+.+|+++...|.++.+.-+..++. =++.+.+.|    |+|++|-+.+-. .-+++.+.++=..+..+  +...|..  
T Consensus        40 Tdv~Gis~~~aG~iflv~RiiDAi~-DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~--  116 (467)
T COG2211          40 TDVFGLSAALAGTIFLVARIIDAIT-DPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYAL--  116 (467)
T ss_pred             hcccCCcHHHHHHHHHHHHHHHHHh-cchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHH--
Confidence            4568999999999999999999988 446676666    578888665543 33333332221122111  2222321  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccc-chhhhhhhhHHHHHHHHHhhH
Q 043916           85 CASVMKNVLSVSIITRLFLLQNRAVE-QHQRGAANGLVMTVVSLTKTA  131 (138)
Q Consensus        85 ~~~~~~~~~~~~~~p~~~~li~~~~p-~~~~G~~~G~~~s~~sl~r~i  131 (138)
                      ....+..++-....-...++.....+ ++||-+.++.-+-....|..+
T Consensus       117 vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l  164 (467)
T COG2211         117 VTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLL  164 (467)
T ss_pred             HHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            22223344444444345666666666 499999999998888887543

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=92.24  E-value=0.75  Score=37.49  Aligned_cols=123  Identities=14%  Similarity=0.039  Sum_probs=80.4

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHhh---hhhhHhhhhhHHHHHHHHH-HHHHHHHHHhhhhhhhhH---------HHH-
Q 043916           15 LSYSTKNVGQVLAISGFNLLFSQLTL---YPYVERIIGPIIITRIAGV-LSITLLTSYTYIAMLSGF---------SLA-   80 (138)
Q Consensus        15 lg~s~~~ig~~~~~~g~~~~~~q~~~---~~~l~~~~g~~~~~~~~~~-~~~~~~~~~p~~~~~~~~---------~~~-   80 (138)
                      +|.+.+..+.++...=+...++|-.+   ..+...|+|+||-++.+.. ...+...++++.......         ..+ 
T Consensus        62 lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~ra  141 (498)
T KOG0637|consen   62 LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRA  141 (498)
T ss_pred             cCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHH
Confidence            44444445555555555556666532   2355558999997776544 455666788887766421         112 


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhh-hhhHHHHHHHHHhhHccCCcC
Q 043916           81 -LFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGA-ANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        81 -~~l~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~-~~G~~~s~~sl~r~igP~i~G  137 (138)
                       ....+...+.-+.........-+++.+.+.+++|-+ +|.......++|.++|=.+++
T Consensus       142 i~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~  200 (498)
T KOG0637|consen  142 IVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS  200 (498)
T ss_pred             HHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence             223344445555666667778999999988777777 999999999999999877764

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=90.19  E-value=2.9  Score=33.45  Aligned_cols=55  Identities=15%  Similarity=0.073  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccC
Q 043916           79 LALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPA  134 (138)
Q Consensus        79 ~~~~l~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~  134 (138)
                      .|..+ ..++..++.++..+......+.+-.|+|+|.-.+|...-..++|-.++-.
T Consensus       335 i~ivf-~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgl  389 (402)
T PF02487_consen  335 IWIVF-VLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGL  389 (402)
T ss_pred             HHHHH-HHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            35443 44556677888888888999999999999999999988888888776643

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=90.13  E-value=0.0014  Score=51.60  Aligned_cols=97  Identities=13%  Similarity=0.023  Sum_probs=61.8

Q ss_pred             hhhhhHhhhhhHHHHHHHHHHHHHHHHHHh--hhhhhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhh
Q 043916           40 LYPYVERIIGPIIITRIAGVLSITLLTSYT--YIAMLSGF--SLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRG  115 (138)
Q Consensus        40 ~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p--~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G  115 (138)
                      +.-.+.||+|+|+++..+.....+....+.  ........  ..+..+..........+....|....+..+..|.+.|.
T Consensus       305 ~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~  384 (451)
T PF00083_consen  305 LAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRS  384 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccc
Confidence            345889999999999998887777666553  11111110  01111111221222223233455668889999999999


Q ss_pred             hhhhHHHHHHHHHhhHccCCc
Q 043916          116 AANGLVMTVVSLTKTAGPAVR  136 (138)
Q Consensus       116 ~~~G~~~s~~sl~r~igP~i~  136 (138)
                      +..|+...+..++..++|.+.
T Consensus       385 ~~~~~~~~~~~i~~~i~~~~~  405 (451)
T PF00083_consen  385 TGIGLSYAVGRIGGFIIPFLF  405 (451)
T ss_pred             ccccccccccccccccccccc
Confidence            999999998888888877653

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00805 oat sodium-independent organic anion transporter

Probab=89.80  E-value=0.34  Score=40.75  Aligned_cols=54  Identities=7%  Similarity=-0.052  Sum_probs=44.3

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhh--hHHHHHHHHHHHHHHHHH
Q 043916           14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIG--PIIITRIAGVLSITLLTS   67 (138)
Q Consensus        14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g--~~~~~~~~~~~~~~~~~~   67 (138)
                      .+|+++.+.|++.....+...+.+.++.+++.||++  .++..+++.....+..++
T Consensus       360 ~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~  415 (633)
T TIGR00805       360 QYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL  415 (633)
T ss_pred             HcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence            489999999999998888666666888999999988  678888888777776544

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK03612 spermidine synthase; Provisional

Probab=89.55  E-value=11  Score=31.20  Aligned_cols=50  Identities=16%  Similarity=0.106  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           87 SVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        87 ~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      .++-.+..+..+|...-+..+... ++-|+..|-.-..+.+|.++|.++.|
T Consensus       117 ~~~~~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~  166 (521)
T PRK03612        117 VLLIGLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFP  166 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHH
Confidence            344466777788887777765432 23455566666667777777766543

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=88.39  E-value=7.6  Score=33.08  Aligned_cols=120  Identities=8%  Similarity=-0.001  Sum_probs=77.3

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHh-hhhhHHHHHHHHHHHHHHHHHHhhhhhhh--hHHHHHHHHHHHHHH
Q 043916           14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVER-IIGPIIITRIAGVLSITLLTSYTYIAMLS--GFSLALFINCASVMK   90 (138)
Q Consensus        14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~-~~g~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~l~~~~~~~   90 (138)
                      .+|++..+...++..+....-+. ..+..++.| ++|+++.+.++..+..++..++.+.....  +..........+.+-
T Consensus        17 ~lg~~~~~A~~i~~~f~~l~yl~-pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLi   95 (654)
T TIGR00926        17 FLGFSESTSTVLFHTFTYLCYLT-PLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALI   95 (654)
T ss_pred             HcCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHH
Confidence            47888888887777777766666 445566665 68999999999998888887765432211  000111233455666


Q ss_pred             HHHHHHHHHHHHHHHhhcccchh---hhhhhhHHHHHHHHHhhHccC
Q 043916           91 NVLSVSIITRLFLLQNRAVEQHQ---RGAANGLVMTVVSLTKTAGPA  134 (138)
Q Consensus        91 ~~~~~~~~p~~~~li~~~~p~~~---~G~~~G~~~s~~sl~r~igP~  134 (138)
                      ..|.+..-|+..+...+-.++++   +-+...+.-...++|..+++.
T Consensus        96 a~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~  142 (654)
T TIGR00926        96 ALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTI  142 (654)
T ss_pred             HhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            78888888999999998877543   334444444445555544443

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=88.37  E-value=0.038  Score=47.05  Aligned_cols=124  Identities=13%  Similarity=0.054  Sum_probs=99.6

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhh----------------
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSG----------------   76 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~----------------   76 (138)
                      .-|++++++.|++.+.+-+...+... ...+...|..+-|++-++..+.+++.+++.+-+.+.+                
T Consensus       125 rRF~i~Ss~sG~I~s~~dig~~l~i~-fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~  203 (735)
T KOG3626|consen  125 RRFKISSSQSGLIASSYDIGNLLLII-FVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENP  203 (735)
T ss_pred             hhcCCCCCcceeEeeecccchhhhhH-hHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCC
Confidence            46888999999988888888888844 5577778888888899999888888877766544320                


Q ss_pred             ------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHH
Q 043916           77 ------------------------------FSLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVS  126 (138)
Q Consensus        77 ------------------------------~~~~~~l~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~s  126 (138)
                                                    ...|..+.+..+++++|....+|.-.+++-+-+.+++-....|+..++..
T Consensus       204 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~  283 (735)
T KOG3626|consen  204 SSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAI  283 (735)
T ss_pred             ccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHH
Confidence                                          01466677888899999999999999999999999999999999988888


Q ss_pred             HHhhHccCCcC
Q 043916          127 LTKTAGPAVRG  137 (138)
Q Consensus       127 l~r~igP~i~G  137 (138)
                      +|.++|=++|+
T Consensus       284 lGPaiGfllgS  294 (735)
T KOG3626|consen  284 LGPAIGFLLGS  294 (735)
T ss_pred             hhhHHHHHHHH
Confidence            88887766554

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.35  E-value=4.9  Score=32.81  Aligned_cols=100  Identities=10%  Similarity=0.002  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043916           26 LAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVSIITRLFLLQ  105 (138)
Q Consensus        26 ~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~li  105 (138)
                      .++.-....++ .++.|.+.++.++|....++...++...+.+-+..      .|. +++.-.+.++|.++.+..--..+
T Consensus        56 ~aiiY~~ftv~-~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N------~y~-~yfssallG~Gaallw~GqG~yl  127 (461)
T KOG3098|consen   56 QAIIYAFFTVS-CLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPN------SYY-LYFSSALLGFGAALLWTGQGGYL  127 (461)
T ss_pred             HHHHHHHHHHH-HHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcc------hHH-HHHHHHHhhhhHHheecccceeh
Confidence            44444555555 44779999999999999988887766544332221      133 34556677888888888888889


Q ss_pred             hhcccchhhhhhhhHHHHHHHHHhhHcc
Q 043916          106 NRAVEQHQRGAANGLVMTVVSLTKTAGP  133 (138)
Q Consensus       106 ~~~~p~~~~G~~~G~~~s~~sl~r~igP  133 (138)
                      ++..++|...+-.++..+....+-.+|-
T Consensus       128 t~~st~~tie~Nisi~Wai~~~~li~Gg  155 (461)
T KOG3098|consen  128 TSNSTRETIERNISIFWAIGQSSLIIGG  155 (461)
T ss_pred             hhcCChhhHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999988888777763

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=87.33  E-value=7  Score=32.14  Aligned_cols=114  Identities=9%  Similarity=0.003  Sum_probs=63.1

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhh----hhHHHHHHHHHHHHHHH-HHHhhhhhhhhHHHHHHHHHHHH
Q 043916           14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERII----GPIIITRIAGVLSITLL-TSYTYIAMLSGFSLALFINCASV   88 (138)
Q Consensus        14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~----g~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~l~~~~~   88 (138)
                      +.|+|..+...+-....+..++. ..+...+.||.    ..+..+.....+....- +.+.......    ...  ....
T Consensus       303 ~~~~s~~~a~~ls~~~~~~g~v~-~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~----~~~--~~~~  375 (495)
T KOG2533|consen  303 NGGYSELQANLLSTPYDVGGIVG-LILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLP----GAY--GAFL  375 (495)
T ss_pred             CCCcChHHhccccchHHhhhHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccch----HHh--HHHH
Confidence            57899999999999999988888 77889999995    33333333333322221 2222221110    111  1111


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccc-hhhhhhhhHHHHHHHHHhhHccC
Q 043916           89 MKNVLSVSIITRLFLLQNRAVEQ-HQRGAANGLVMTVVSLTKTAGPA  134 (138)
Q Consensus        89 ~~~~~~~~~~p~~~~li~~~~p~-~~~G~~~G~~~s~~sl~r~igP~  134 (138)
                      .-..+.....+....++|+.... .++-++..+..-..+.+..++|.
T Consensus       376 ~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~  422 (495)
T KOG2533|consen  376 IGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQ  422 (495)
T ss_pred             hcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhh
Confidence            11223344556677777777654 45555555555555555555543

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=80.08  E-value=0.55  Score=38.83  Aligned_cols=126  Identities=17%  Similarity=0.157  Sum_probs=0.0

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhh--hHHHHHHHHHHHHHHHHHHhhhhhhh---------------
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIG--PIIITRIAGVLSITLLTSYTYIAMLS---------------   75 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g--~~~~~~~~~~~~~~~~~~~p~~~~~~---------------   75 (138)
                      ..|+.++++...+.....+.....-.++.+.+.||+.  .|+..+++.....+..+++...-.+.               
T Consensus       334 ~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~  413 (539)
T PF03137_consen  334 SQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHN  413 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCcccc
Confidence            3599999999998888877666665667788888875  56666666665554444311100000               


Q ss_pred             ---------------------------hH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHH
Q 043916           76 ---------------------------GF------SLALFINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVM  122 (138)
Q Consensus        76 ---------------------------~~------~~~~~l~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~  122 (138)
                                                 |.      ..+......+.+..+...........++-+.+|+|+|.-+.|+..
T Consensus       414 ~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~  493 (539)
T PF03137_consen  414 STSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCVPPEQRSFALGVQW  493 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccCChhhcchhhhHHH
Confidence                                       00      011111122223233334444445666779999999999999987


Q ss_pred             HHHH-HHhhHccCCcCC
Q 043916          123 TVVS-LTKTAGPAVRGA  138 (138)
Q Consensus       123 s~~s-l~r~igP~i~G~  138 (138)
                      .... +|.+=||++-|+
T Consensus       494 ~~~rllg~IPgPIifG~  510 (539)
T PF03137_consen  494 LIIRLLGFIPGPIIFGA  510 (539)
T ss_dssp             -----------------
T ss_pred             HHHHhhcCcchHHHHhH
Confidence            6544 456667877663

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	138
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.46
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.41
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.37
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.37
2xut_A	524	Proton/peptide symporter family protein; transport	99.27
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.08
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.06
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.88
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.74
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.67
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.56
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.37
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.25
2xut_A	524	Proton/peptide symporter family protein; transport	97.87

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.46  E-value=8.7e-13  Score=101.23  Aligned_cols=119  Identities=7%  Similarity=-0.103  Sum_probs=104.9

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHH---hhhhhhhhHHHHHHHHHHHH
Q 043916           12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSY---TYIAMLSGFSLALFINCASV   88 (138)
Q Consensus        12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~---p~~~~~~~~~~~~~l~~~~~   88 (138)
                      ...+|+|..|+|++.+.+.+...+.+. +.+++.||+|+|+++..+..++.++.+++   ++.++.     | .+...+.
T Consensus        53 ~~~~g~s~~~~g~~~~~~~~~~~i~~~-~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~-----~-~l~~~~~  125 (438)
T 3o7q_A           53 QQAFTLTNFQAGLIQSAFYFGYFIIPI-PAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNY-----T-LFLVGLF  125 (438)
T ss_dssp             HHHSCCCSHHHHHHHHHHHHHHHTTHH-HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCH-----H-HHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHH-hHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccH-----H-HHHHHHH
Confidence            356899999999999999999999965 78999999999999999999999998887   443332     2 3456778


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           89 MKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        89 ~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      +.+++.+...|...+++++..|+|+|++++|+.++..++|..+||.+++
T Consensus       126 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  174 (438)
T 3o7q_A          126 IIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQ  174 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999999999999999999999999999999999999998876

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.41  E-value=1.3e-12  Score=100.54  Aligned_cols=119  Identities=11%  Similarity=0.010  Sum_probs=104.3

Q ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhh----hhhhhhHHHHHHHHHH
Q 043916           11 KYGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTY----IAMLSGFSLALFINCA   86 (138)
Q Consensus        11 ~~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~----~~~~~~~~~~~~l~~~   86 (138)
                      ....+ .|..|+|++.+.+.+...+.+. +.+++.||+|+|+++..+..++.++.+++++    ..+.     | .+...
T Consensus        54 ~~~~~-~s~~~~g~~~~~~~~~~~~~~~-~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~-~l~~~  125 (451)
T 1pw4_A           54 LVEQG-FSRGDLGFALSGISIAYGFSKF-IMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSI-----A-VMFVL  125 (451)
T ss_dssp             TTSST-TCSSCHHHHHHHHHHHHHHHHH-HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSS-----S-HHHHH
T ss_pred             HHHHh-ccHhHHHHHHHHHHHHHHHHHH-hHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccH-----H-HHHHH
Confidence            44567 8999999999999999999965 7799999999999999999999999988887    4432     2 33456


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           87 SVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        87 ~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      +++.+++.+...|...+++++..|+|+||+++|+.+...++|..+||.++|
T Consensus       126 ~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  176 (451)
T 1pw4_A          126 LFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL  176 (451)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred             HHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            778889999999999999999999999999999999999999999998764

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.37  E-value=5.7e-12  Score=98.33  Aligned_cols=119  Identities=15%  Similarity=0.123  Sum_probs=103.8

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhh-hhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 043916           12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERI-IGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMK   90 (138)
Q Consensus        12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~-~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~   90 (138)
                      .+++|+|..++|++.+.+.+...+.+. +.+++.|| +|+|+++..+..+..++.+++++.++.     + .+...+.+.
T Consensus        46 ~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~l~  118 (491)
T 4aps_A           46 TGDLHITRATAASIMAIYASMVYLSGT-IGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGA-----S-ALFGSIILI  118 (491)
T ss_dssp             HTSCCSCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCST-----T-HHHHHHHHH
T ss_pred             hhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhH-----H-HHHHHHHHH
Confidence            356999999999999999999999965 78999999 899999999999999998888776543     1 334567788


Q ss_pred             HHHHHHHHHHHHHHHhhcccchh--hhhhhhHHHHHHHHHhhHccCCcC
Q 043916           91 NVLSVSIITRLFLLQNRAVEQHQ--RGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        91 ~~~~~~~~p~~~~li~~~~p~~~--~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      +++.+...|...+++++..|+++  ||+..++.+....++..+||.++|
T Consensus       119 g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  167 (491)
T 4aps_A          119 IIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVG  167 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999988  888899899999999999998765

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.37  E-value=1e-12  Score=99.27  Aligned_cols=119  Identities=17%  Similarity=0.088  Sum_probs=104.7

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916           12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN   91 (138)
Q Consensus        12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~   91 (138)
                      ..++|.|+.|+|++.+...+...+.+. +.+++.||+|+|+.+..+.....+....+++.++.     | .+...+.+.+
T Consensus        27 ~~~~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-----~-~l~~~~~l~g   99 (375)
T 2gfp_A           27 ARDLNVREGAVQSVMGAYLLTYGVSQL-FYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSL-----T-VLIAASAMQG   99 (375)
T ss_dssp             HTTSSSTTHHHHHHHHHHHHHHHHHHT-THHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHH-----H-HHHHHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccH-----H-HHHHHHHHHH
Confidence            456899999999999999999999955 78999999999999999999999988888766432     2 3445677888


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      ++.+...|...+++++..|+|+|++.+|+.+...+++..+||.++|
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  145 (375)
T 2gfp_A          100 MGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGG  145 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            8999999999999999999999999999999999999999998765

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.27  E-value=4.2e-11  Score=94.22  Aligned_cols=116  Identities=8%  Similarity=-0.040  Sum_probs=100.3

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhh-hhHHHHHHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHHHHHHHHH
Q 043916           15 LSYSTKNVGQVLAISGFNLLFSQLTLYPYVERII-GPIIITRIAGVLSITLLTSYTYIA-MLSGFSLALFINCASVMKNV   92 (138)
Q Consensus        15 lg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~-g~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~l~~~~~~~~~   92 (138)
                      +++|+.++|++.+.+.+...+.+. +.+++.||+ |+|+++..+..++.+..+++++.. +.     | .+...+.+.++
T Consensus        49 ~~~s~~~~g~~~~~~~~~~~~~~~-~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~l~g~  121 (524)
T 2xut_A           49 EELRGAVAKDVFHSFVIGVYFFPL-LGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSV-----Q-GFYTGLFLIAL  121 (524)
T ss_dssp             SSTTTTTHHHHHHHHHHHHHHTHH-HHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCH-----H-HHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccH-----H-HHHHHHHHHHH
Confidence            349999999999999999999855 789999999 999999999999999888887765 32     2 23456677788


Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhhhhH---HHHHHHHHhhHccCCcC
Q 043916           93 LSVSIITRLFLLQNRAVEQHQRGAANGL---VMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~---~~s~~sl~r~igP~i~G  137 (138)
                      +.+...|...+++++.+|+++||+.++.   .++...+|..+||.++|
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~  169 (524)
T 2xut_A          122 GSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMP  169 (524)
T ss_dssp             HHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred             hccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888999999999999999999887777   99999999999999886

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.08  E-value=6.2e-10  Score=85.42  Aligned_cols=120  Identities=11%  Similarity=0.019  Sum_probs=93.2

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhh--hhHHHHHHHHHHHH-HHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERII--GPIIITRIAGVLSI-TLLTSYTYIAMLSGFSLALFINCASVM   89 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~--g~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~l~~~~~~   89 (138)
                      ..+|+++.+.|+..+..++..++.. .+.+++.||+  |+|+.+..+..+.. +.++++.+.....   .|. +.....+
T Consensus       281 ~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~  355 (451)
T 1pw4_A          281 EVKHFALDKSSWAYFLYEYAGIPGT-LLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGN---PTV-DMICMIV  355 (451)
T ss_dssp             TBSCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTC---HHH-HHHHHHH
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccC---HHH-HHHHHHH
Confidence            3489999999999999999999984 5779999999  99998888777666 5555554432111   122 2233344


Q ss_pred             HHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHH-HhhHccCCcC
Q 043916           90 KNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSL-TKTAGPAVRG  137 (138)
Q Consensus        90 ~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl-~r~igP~i~G  137 (138)
                      .+.+.....+....++.+.+|+++||+++|+.++...+ +..++|.+.|
T Consensus       356 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g  404 (451)
T 1pw4_A          356 IGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG  404 (451)
T ss_dssp             HHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666677788889999999999999999999999999 9999998765

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.06  E-value=2.2e-09  Score=83.53  Aligned_cols=117  Identities=14%  Similarity=0.047  Sum_probs=95.7

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhh--------------hhhHHHHH
Q 043916           16 SYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAM--------------LSGFSLAL   81 (138)
Q Consensus        16 g~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~--------------~~~~~~~~   81 (138)
                      +.+..+.|++.+.+-+..++. .++.+++.||+|||+++.++..++.++.++..+...              +...  +.
T Consensus        51 ~~~~~~~g~~~s~~~~G~~iG-~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~--~~  127 (491)
T 4gc0_A           51 SAANSLLGFCVASALIGCIIG-GALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGY--VP  127 (491)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHH-HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGC--HH
T ss_pred             ccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhh--HH
Confidence            345667889988888888888 458899999999999999999999998887764221              0111  23


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCC
Q 043916           82 FINCASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAV  135 (138)
Q Consensus        82 ~l~~~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i  135 (138)
                      .+...+++.+++.+...|...+++++.+|+++||+..++.+.....+..+++.+
T Consensus       128 ~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~  181 (491)
T 4gc0_A          128 EFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCV  181 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhc
Confidence            466889999999999999999999999999999999999999988888777654

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.88  E-value=7.6e-09  Score=79.73  Aligned_cols=115  Identities=10%  Similarity=0.028  Sum_probs=84.9

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 043916           17 YSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVLSVS   96 (138)
Q Consensus        17 ~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~   96 (138)
                      .+..++|+..+..++..++. ..+.+++.||+|+|++...+.....+.+..+++....     +.. .....+...+...
T Consensus       256 ~~~~~~g~~~~~~~~~~~~~-~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~l~~~~~~~  328 (417)
T 2cfq_A          256 QGTRVFGYVTTMGELLNASI-MFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSA-----LEV-VILKTLHMFEVPF  328 (417)
T ss_dssp             HHTHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSH-----HHH-HHHTTHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHHHHHH-HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccH-----HHH-HHHHHHHHHHHHH
Confidence            34667888888888887777 4578999999999999998888777776666543321     211 1222233444445


Q ss_pred             HHHHHHHHHhhcccchhhhhhhhHH-HHHHHHHhhHccCCcCC
Q 043916           97 IITRLFLLQNRAVEQHQRGAANGLV-MTVVSLTKTAGPAVRGA  138 (138)
Q Consensus        97 ~~p~~~~li~~~~p~~~~G~~~G~~-~s~~sl~r~igP~i~G~  138 (138)
                      ..+....++++..|+|.||+..|+. ++...++..+||.++|+
T Consensus       329 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~  371 (417)
T 2cfq_A          329 LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGN  371 (417)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHT
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHH
Confidence            5566788999999999999999994 88889999999988763

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.74  E-value=5.9e-08  Score=74.18  Aligned_cols=114  Identities=8%  Similarity=0.044  Sum_probs=90.9

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916           14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL   93 (138)
Q Consensus        14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~   93 (138)
                      .+|+++.+.|+..+..++...+.+ ++.+++.||+|+|+.+..+..+..+..+++.+.+..     +..  ....+...+
T Consensus       289 ~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~g~~  360 (438)
T 3o7q_A          289 IPGMTAGFAANYLTGTMVCFFIGR-FTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGH-----VGL--IALTLCSAF  360 (438)
T ss_dssp             STTCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHH-----HHH--HHHHHHHHH
T ss_pred             cCCcchhHHHHHHHHHHHHHHHHH-HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCc-----HHH--HHHHHHHHH
Confidence            369999999999999999999884 588999999999999999998888877766654431     221  222455667


Q ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           94 SVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        94 ~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      .+..+|...++..+..|++ +++..++.. ...++..++|.+.|
T Consensus       361 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g  402 (438)
T 3o7q_A          361 MSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMG  402 (438)
T ss_dssp             HTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHH
Confidence            7778899999989999866 899988877 67799999998765

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.67  E-value=1.1e-08  Score=76.97  Aligned_cols=116  Identities=8%  Similarity=-0.017  Sum_probs=82.4

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHH-HHHHHH--HHhhhhhhhhHHHHHHHHHHHHHH
Q 043916           14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVL-SITLLT--SYTYIAMLSGFSLALFINCASVMK   90 (138)
Q Consensus        14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~-~~~~~~--~~p~~~~~~~~~~~~~l~~~~~~~   90 (138)
                      .+|+|+.+.|+..+..++...+. ..+.+++.||++++.  ..+... ......  ..+..   .....|. +.....+.
T Consensus       229 ~~g~~~~~~g~~~~~~~~~~~~~-~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~l~  301 (375)
T 2gfp_A          229 VLGLSSMTVSILFILPIPAAFFG-AWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWF---GVMNVWT-LLVPAALF  301 (375)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHH-HHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHH---HHHHHHH-HHHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhh---ccccHHH-HHHHHHHH
Confidence            37889999999999999998888 458899999998732  222222 111111  11111   0111222 22344455


Q ss_pred             HHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           91 NVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        91 ~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      .++.+...|....++.+..| |+||+++|+.++...++..++|.+.|
T Consensus       302 g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g  347 (375)
T 2gfp_A          302 FFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSA  347 (375)
T ss_dssp             HHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCT
T ss_pred             HHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHH
Confidence            67778888999999999998 89999999999999999999999886

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.56  E-value=2.6e-08  Score=77.53  Aligned_cols=121  Identities=5%  Similarity=-0.047  Sum_probs=87.0

Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHH-----HHHHHHHHHHHHHhhhhhhh----hHHHHHHHHH
Q 043916           15 LSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITR-----IAGVLSITLLTSYTYIAMLS----GFSLALFINC   85 (138)
Q Consensus        15 lg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~-----~~~~~~~~~~~~~p~~~~~~----~~~~~~~l~~   85 (138)
                      ++.+..+.++.....++...+. ..+.+++.||+++|+...     .+..+..+++.++.......    +...+ .+..
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  391 (491)
T 4aps_A          314 VDSSWFPVSWFQSLNPLFIMLY-TPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPL-WLVG  391 (491)
T ss_dssp             CCCSSSCSGGGTTHHHHHHHHH-HHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTH-HHHH
T ss_pred             hccCccCHHHHhccchHHHHHH-HHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHH-HHHH
Confidence            4555567788888888888888 447788999999876555     66666666665555432110    00112 2224


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           86 ASVMKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        86 ~~~~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      ...+..++.+...|....++.+.+|+++||+++|+.+....++..++|.+.|
T Consensus       392 ~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~  443 (491)
T 4aps_A          392 SWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVT  443 (491)
T ss_dssp             HHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556677778778889999999999999999999999999999999998765

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.37  E-value=4.7e-09  Score=80.90  Aligned_cols=119  Identities=12%  Similarity=0.053  Sum_probs=73.6

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHH---HHhhhhhhhhHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLT---SYTYIAMLSGFSLALFINCASVM   89 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~---~~p~~~~~~~~~~~~~l~~~~~~   89 (138)
                      ..+|+|+.|+|++.+...+...+.|. +.+++.||+|+|+++..+...+.+...   ...+.....    +. ......+
T Consensus        36 ~~~g~s~~~~g~~~~~~~~~~~i~~~-~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~  109 (417)
T 2cfq_A           36 DINHISKSDTGIIFAAISLFSLLFQP-LFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQ----YN-ILVGSIV  109 (417)
T ss_dssp             TTTCCCTTTSHHHHHHHHHHHHHHHH-HHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHH----TT-CCHHHHG
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH-HHHHHHH
Confidence            34899999999999999999999966 779999999999999988876644211   111111100    00 0001111


Q ss_pred             HHHHHHHHHHHHHHHHhhcccc--hhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           90 KNVLSVSIITRLFLLQNRAVEQ--HQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        90 ~~~~~~~~~p~~~~li~~~~p~--~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      ...+.+..++.....+....++  +++|...|..+...+++.+++|.++|
T Consensus       110 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~  159 (417)
T 2cfq_A          110 GGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVG  159 (417)
T ss_dssp             GGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHH
Confidence            1112222333333334444433  46677788887778888888887764

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.25  E-value=1.6e-05  Score=61.58  Aligned_cols=120  Identities=13%  Similarity=-0.057  Sum_probs=81.0

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916           14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL   93 (138)
Q Consensus        14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~   93 (138)
                      ..+.+..+........++...+. ..+..++.||+|+|+....+.....+....+......... .+..+..........
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~  383 (491)
T 4gc0_A          306 TLGASTDIALLQTIIVGVINLTF-TVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAP-GIVALLSMLFYVAAF  383 (491)
T ss_dssp             HSSCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHH
T ss_pred             hcCCCccchhhHHHHHHHHHHHH-HHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHH
Confidence            35667777777777777777776 5577899999999999998888777766555433221111 121111111111222


Q ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCC
Q 043916           94 SVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAV  135 (138)
Q Consensus        94 ~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i  135 (138)
                      .....|....+.++..|.+.|++.+|+......++..++|.+
T Consensus       384 ~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~  425 (491)
T 4gc0_A          384 AMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWT  425 (491)
T ss_dssp             HTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTH
T ss_pred             HhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222336677889999999999999999999999998887754

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=97.87  E-value=5.5e-06  Score=64.93  Aligned_cols=115  Identities=7%  Similarity=-0.014  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhH----hhhh----hHHHHHHHHHHHHHHHHHHhhhhhhh----hHHHHHHHHHHHH
Q 043916           21 NVGQVLAISGFNLLFSQLTLYPYVE----RIIG----PIIITRIAGVLSITLLTSYTYIAMLS----GFSLALFINCASV   88 (138)
Q Consensus        21 ~ig~~~~~~g~~~~~~q~~~~~~l~----~~~g----~~~~~~~~~~~~~~~~~~~p~~~~~~----~~~~~~~l~~~~~   88 (138)
                      +.+++.....+...+.+ .+..++.    +|.+    +++....+..+..+.++.+++.....    ....|. +.....
T Consensus       336 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  413 (524)
T 2xut_A          336 EPAMMQALNPLLVMLLI-PFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFW-QILPYA  413 (524)
T ss_dssp             CHHHHHTTSGGGHHHHG-GGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHH-HHHHHH
T ss_pred             cHHHHHHHHHHHHHHhH-HHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHH-HHHHHH
Confidence            34555555555555553 3334432    3333    34566677777777776665532100    001122 223456


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           89 MKNVLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        89 ~~~~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      +..++.+...|...+++++.+|+++||+++|+.++...++..+||.+.|
T Consensus       414 l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g  462 (524)
T 2xut_A          414 LLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANV  462 (524)
T ss_dssp             HHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            6678888889999999999999999999999999999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	138
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.45
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.97
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.59
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.51

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=1.6e-13  Score=102.97  Aligned_cols=120  Identities=10%  Similarity=0.026  Sum_probs=102.8

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916           14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL   93 (138)
Q Consensus        14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~   93 (138)
                      ++|+|..|+|++.+.+.+...+.+. +.+++.||+|+|+++..+..+..+..+++++.......  ...+...+.+..++
T Consensus        53 ~~g~s~~~~g~~~s~~~~~~~~~~~-~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~  129 (447)
T d1pw4a_          53 EQGFSRGDLGFALSGISIAYGFSKF-IMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS--IAVMFVLLFLCGWF  129 (447)
T ss_dssp             SSTTCSSCHHHHHHHHHHHHHHHHH-HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSS--SSHHHHHHHHHHHH
T ss_pred             HhCcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhh--HHHHHHHHHHHHHh
Confidence            5799999999999999999999965 78999999999999999999999988888766433211  12344567788888


Q ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhHccCCc
Q 043916           94 SVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSLTKTAGPAVR  136 (138)
Q Consensus        94 ~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl~r~igP~i~  136 (138)
                      .+...|....++++..|+++||+++|+.+....++..++|.++
T Consensus       130 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~  172 (447)
T d1pw4a_         130 QGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF  172 (447)
T ss_dssp             HHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhh
Confidence            8999999999999999999999999999999999999998754

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.97  E-value=9.7e-10  Score=79.96  Aligned_cols=118  Identities=10%  Similarity=0.030  Sum_probs=95.3

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 043916           13 GGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNV   92 (138)
Q Consensus        13 gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~   92 (138)
                      ...+.+..+.+......++...+. ..+.+++.||+++++....+..+..+....+++.++.     |. +.....+..+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~l~g~  324 (417)
T d1pv7a_         252 ATGEQGTRVFGYVTTMGELLNASI-MFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSA-----LE-VVILKTLHMF  324 (417)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHH-HTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCH-----HH-HHHHHHHHHH
T ss_pred             cccccchhhhcccccccccccccc-hhhhhhhhcccccccchhhhHHHHHHhhhcccccccc-----ch-hhHHHHHHHH
Confidence            445667778888888888888887 5588999999999999999999988888877765542     22 2344456677


Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhhhhHHH-HHHHHHhhHccCCcC
Q 043916           93 LSVSIITRLFLLQNRAVEQHQRGAANGLVM-TVVSLTKTAGPAVRG  137 (138)
Q Consensus        93 ~~~~~~p~~~~li~~~~p~~~~G~~~G~~~-s~~sl~r~igP~i~G  137 (138)
                      +.+...|...+++++.+|+|+||+++|+.. ...+++..++|.++|
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G  370 (417)
T d1pv7a_         325 EVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAG  370 (417)
T ss_dssp             HHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888889999999999999999999999864 456799999998765

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.59  E-value=3e-09  Score=77.24  Aligned_cols=121  Identities=11%  Similarity=0.019  Sum_probs=78.2

Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043916           14 GLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKNVL   93 (138)
Q Consensus        14 glg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~   93 (138)
                      .+|+|+.|+|++.+...+...+.|. +.+++.||+|+||.+..+.....+..............  .............+
T Consensus        37 ~~g~s~~~~g~i~s~~~l~~~i~~~-~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  113 (417)
T d1pv7a_          37 INHISKSDTGIIFAAISLFSLLFQP-LFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLL--QYNILVGSIVGGIY  113 (417)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHHHTHH-HHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHH--HTTCHHHHHHTTTT
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhH--HHHHHHHHHHhhhc
Confidence            4899999999999999999999966 77999999999999999888887777666554432211  11111111111112


Q ss_pred             HHHHHHHHHHHHhhccc--chhhhhhhhHHHHHHHHHhhHccCCcC
Q 043916           94 SVSIITRLFLLQNRAVE--QHQRGAANGLVMTVVSLTKTAGPAVRG  137 (138)
Q Consensus        94 ~~~~~p~~~~li~~~~p--~~~~G~~~G~~~s~~sl~r~igP~i~G  137 (138)
                      .+...+..........+  ++++.+.++..+...+.+..++|.++|
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (417)
T d1pv7a_         114 LGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVG  159 (417)
T ss_dssp             GGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccc
Confidence            22222222222222222  245666778888888888888887654

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.51  E-value=4.2e-07  Score=67.22  Aligned_cols=124  Identities=9%  Similarity=-0.043  Sum_probs=80.9

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 043916           12 YGGLSYSTKNVGQVLAISGFNLLFSQLTLYPYVERIIGPIIITRIAGVLSITLLTSYTYIAMLSGFSLALFINCASVMKN   91 (138)
Q Consensus        12 ~gglg~s~~~ig~~~~~~g~~~~~~q~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~   91 (138)
                      ...++++..+.++.....++...+.+ .+.+++.||+++++................-..........|.. .....+..
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g  354 (447)
T d1pw4a_         277 KEVKHFALDKSSWAYFLYEYAGIPGT-LLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVD-MICMIVIG  354 (447)
T ss_dssp             TTBSCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHH-HHHHHHHH
T ss_pred             ccccccccchhhhhhhcchhhhhhhh-hhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHH-HHHHHHHH
Confidence            45689999999999999999999884 47799999998665433333322222111111111111111222 22333445


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHH-HhhHccCCcC
Q 043916           92 VLSVSIITRLFLLQNRAVEQHQRGAANGLVMTVVSL-TKTAGPAVRG  137 (138)
Q Consensus        92 ~~~~~~~p~~~~li~~~~p~~~~G~~~G~~~s~~sl-~r~igP~i~G  137 (138)
                      .+.....+......++.+|+++||+++|+.+....+ +..++|.+.|
T Consensus       355 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g  401 (447)
T d1pw4a_         355 FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG  401 (447)
T ss_dssp             HHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556666777888999999999999999999888877 4566776654