Citrus Sinensis ID: 043933

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MQLQELNNRFNESNTELLICLARLCPNDLFAAFDKEKLLRLVEFYPKDFFAIDLIALEMQLDLYRIGELARTMVNTKKDKVYPLVYQLVTLALILPVAIATVERVFSSMTFVKNLLRNRMGDQWLMIT
Secondary Structure (PSIPRED)
ccHHHHHHHHcHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHcccHHHHHHHHHHHHcccccHHHHccHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccEEEEc
Coil and Loop (DISEMBL)
mqlqelnnrfnesNTELLICLARLCPNDLFAAFDKEKLLRLVefypkdffAIDLIALEMQLDLYRIGELARTMVntkkdkvyPLVYQLVTLALILPVAIATVERVFSSMTFVKNLLRnrmgdqwlmit
Flexible Loop (DISEMBL)
mqlqelnnRFNESNTELLICLARLCPNDLFAAFDKEKLLRLVEFYPKDFFAIDLIALEMQLDLYRIGELARTMVNTKKDKVYPLVYQLVTLALILPVAIATVERVFSSMTFVKnllrnrmgdqwlmit
Low Complexity Region (SEG)
MQLQELNNRFNESNTELLICLARLCPNDLFAAFDKEKLLRLVEFYPKDFFAIDLIALEMQLDLYRIGELARTMVNTKKDKVYPLVYQLVTLALILPVAIATVERVFSSMTFVKNLLRNRMGDQWLMIT
Disordered region (IsUnstruct)
**************TELLICLARLCPNDLFAAFDKEKLLRLVEFYPKDFFAIDLIALEMQLDLYRIGELARTMVNTKKDKVYPLVYQLVTLALILPVAIATVERVFSSMTFVKNLLRNRMGDQWLM**
Disordered Region (DISOPRED)
MQLQELNNRFNESNTELLICLARLCPNDLFAAFDKEKLLRLVEFYPKDFFAIDLIALEMQLDLYRIGELARTMVNTKKDKVYPLVYQLVTLALILPVAIATVERVFSSMTFVKNLLRNRMGDQWLMI*
Disordered Region (DISEMBL)
MQLQELNNRFNESNTELLICLARLCPNDLFAAFDKEKLLRLVEFYPKDFFAIDLIALEMQLDLYRIGELARTMVNTKKDKVYPLVYQLVTLALILPVAIATVERVFSSMTFVKNLLRNRMGDQWLMIT
Disordered Region (DISPRO)
MQLQELNNRFNESNTELLICLARLCPNDLFAAFDKEKLLRLVEFYPKDFFAIDLIALEMQLDLYRIGELARTMVNTKKDKVYPLVYQLVTLALILPVAIATVERVFSSMTFVKNLLRNRMGDQWLMIT
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQLQELNNRFNESNTELLICLARLCPNDLFAAFDKEKLLRLVEFYPKDFFAIDLIALEMQLDLYRIGELARTMVNTKKDKVYPLVYQLVTLALILPVAIATVERVFSSMTFVKNLLRNRMGDQWLMIT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
224126313	788	predicted protein [Populus trichocarpa]	0.976	0.158	0.546	2e-33
357490617	892	Zinc finger MYM-type protein [Medicago t	0.976	0.140	0.517	2e-32
8954063	811	Contains similarity to a transposable el	0.976	0.154	0.517	1e-31
15221982	769	TTF-type zinc finger protein with HAT di	0.976	0.162	0.517	1e-31
15230070	536	General transcription factor 2-related z	0.976	0.233	0.510	1e-28
242047832	641	hypothetical protein SORBIDRAFT_02g00613	0.968	0.193	0.510	1e-28
116308850	864	H1005F08.16 [Oryza sativa Indica Group]	0.968	0.143	0.536	1e-27
356536945	557	PREDICTED: uncharacterized protein LOC10	0.953	0.219	0.477	1e-27
357143537	809	PREDICTED: zinc finger MYM-type protein	0.960	0.152	0.452	2e-27
125605388	377	hypothetical protein OsJ_29039 [Oryza sa	0.968	0.328	0.463	3e-27

>gi|224126313|ref|XP_002319808.1| predicted protein [Populus trichocarpa] gi|222858184|gb|EEE95731.1| predicted protein [Populus trichocarpa]

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 76/139 (54%), Positives = 98/139 (70%), Gaps = 14/139 (10%)

Query: 1   MQLQELNNRFNESNTELLICLARLCPNDLFAAFDKEKLLRLVEFYPKDFFAIDLIALEMQ 60
           MQL EL++RF E++TELL+C+A L P+D F+AF+KEKLLRL  FYP +F  +DL+ L  Q
Sbjct: 615 MQLTELDDRFTETSTELLLCVACLNPSDSFSAFNKEKLLRLALFYPSEFSIVDLMILGDQ 674

Query: 61  LDLY--------------RIGELARTMVNTKKDKVYPLVYQLVTLALILPVAIATVERVF 106
           LD Y               I  LA  MV TKK+ ++PLVY L+ L+L+LPVA ATVERVF
Sbjct: 675 LDTYIIDLRGDDEFSDIEGIASLAEKMVKTKKNLIFPLVYMLIKLSLLLPVATATVERVF 734

Query: 107 SSMTFVKNLLRNRMGDQWL 125
           S+M  VK+ LRNRMGD+W+
Sbjct: 735 SAMHIVKSRLRNRMGDKWM 753

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357490617|ref|XP_003615596.1| Zinc finger MYM-type protein [Medicago truncatula] gi|355516931|gb|AES98554.1| Zinc finger MYM-type protein [Medicago truncatula]

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 72/139 (51%), Positives = 92/139 (66%), Gaps = 14/139 (10%)

Query: 1   MQLQELNNRFNESNTELLICLARLCPNDLFAAFDKEKLLRLVEFYPKDFFAIDLIALEMQ 60
           MQLQELNNRFNE+N+ LLIC+  LCPN+ F+ FDK KL+   +FYP +F    L+ L+ Q
Sbjct: 719 MQLQELNNRFNETNSRLLICMECLCPNNSFSKFDKAKLIEFAKFYPIEFSPTSLVLLDSQ 778

Query: 61  LDLY--------------RIGELARTMVNTKKDKVYPLVYQLVTLALILPVAIATVERVF 106
           L+ Y               I +L++ MV  KK   YPLVY L+ LA+ILPVA +TVER F
Sbjct: 779 LETYIFDMRRSVEFASLKGISDLSKKMVALKKHIDYPLVYGLLKLAMILPVATSTVERAF 838

Query: 107 SSMTFVKNLLRNRMGDQWL 125
           S+M  VK+ LRNRMGD W+
Sbjct: 839 SAMKIVKSRLRNRMGDDWM 857

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8954063|gb|AAF82236.1|AC069143_12 Contains similarity to a transposable element Tip100 protein for transposase from Ipomoea purpurea gb|4063769 and is a member of the transmembrane 4 family PF|00335 [Arabidopsis thaliana]

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 72/139 (51%), Positives = 95/139 (68%), Gaps = 14/139 (10%)

Query: 1   MQLQELNNRFNESNTELLICLARLCPNDLFAAFDKEKLLRLVEFYPKDFFAIDLIALEMQ 60
           MQLQE N+RF+E N+ELLIC++ L P D F  FDK  L+RL EFYP DF  ++  +L+ Q
Sbjct: 638 MQLQEFNDRFDEVNSELLICMSSLSPIDSFRQFDKSMLVRLTEFYPDDFSFVERRSLDHQ 697

Query: 61  LDLYR--------------IGELARTMVNTKKDKVYPLVYQLVTLALILPVAIATVERVF 106
           L++Y               +G+LAR MV T+K   +PLVY+L+ ++LILPVA ATVER F
Sbjct: 698 LEIYLDNVKNDERFTDLKCLGDLARVMVETRKHLSHPLVYRLLKVSLILPVATATVERCF 757

Query: 107 SSMTFVKNLLRNRMGDQWL 125
           S+M FVK  LRNR+GD +L
Sbjct: 758 SAMNFVKTTLRNRIGDMFL 776

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221982|ref|NP_173360.1| TTF-type zinc finger protein with HAT dimerization domain [Arabidopsis thaliana] gi|332191703|gb|AEE29824.1| TTF-type zinc finger protein with HAT dimerization domain [Arabidopsis thaliana]

 Score =  140 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 72/139 (51%), Positives = 95/139 (68%), Gaps = 14/139 (10%)

Query: 1   MQLQELNNRFNESNTELLICLARLCPNDLFAAFDKEKLLRLVEFYPKDFFAIDLIALEMQ 60
           MQLQE N+RF+E N+ELLIC++ L P D F  FDK  L+RL EFYP DF  ++  +L+ Q
Sbjct: 596 MQLQEFNDRFDEVNSELLICMSSLSPIDSFRQFDKSMLVRLTEFYPDDFSFVERRSLDHQ 655

Query: 61  LDLYR--------------IGELARTMVNTKKDKVYPLVYQLVTLALILPVAIATVERVF 106
           L++Y               +G+LAR MV T+K   +PLVY+L+ ++LILPVA ATVER F
Sbjct: 656 LEIYLDNVKNDERFTDLKCLGDLARVMVETRKHLSHPLVYRLLKVSLILPVATATVERCF 715

Query: 107 SSMTFVKNLLRNRMGDQWL 125
           S+M FVK  LRNR+GD +L
Sbjct: 716 SAMNFVKTTLRNRIGDMFL 734

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230070|ref|NP_189621.1| General transcription factor 2-related zinc finger protein [Arabidopsis thaliana] gi|332644086|gb|AEE77607.1| General transcription factor 2-related zinc finger protein [Arabidopsis thaliana]

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 71/139 (51%), Positives = 92/139 (66%), Gaps = 14/139 (10%)

Query: 1   MQLQELNNRFNESNTELLICLARLCPNDLFAAFDKEKLLRLVEFYPKDFFAIDLIALEMQ 60
           MQLQE N+ F+E N+ELLIC++ L P D F  FDK  L+RL EFYP DF  ++  +L+ Q
Sbjct: 363 MQLQEFNDCFDELNSELLICMSSLSPIDSFRQFDKSMLVRLTEFYPDDFSFVERRSLDHQ 422

Query: 61  LDLY--------------RIGELARTMVNTKKDKVYPLVYQLVTLALILPVAIATVERVF 106
           L++Y               +G+LAR MV T+K   +PLVY+L+ L+LILPVA ATV R F
Sbjct: 423 LEIYLDNVKNDERFTDLEHLGDLARVMVETRKHLSHPLVYRLLKLSLILPVATATVVRCF 482

Query: 107 SSMTFVKNLLRNRMGDQWL 125
           S+M FVK  LRNR GD +L
Sbjct: 483 SAMNFVKTTLRNRFGDVFL 501

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242047832|ref|XP_002461662.1| hypothetical protein SORBIDRAFT_02g006133 [Sorghum bicolor] gi|241925039|gb|EER98183.1| hypothetical protein SORBIDRAFT_02g006133 [Sorghum bicolor]

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/139 (51%), Positives = 96/139 (69%), Gaps = 15/139 (10%)

Query: 2   QLQELNNRFNESNTELLICLARLCPNDLFAAFDKEKLLRLV-EFYPKDFFAIDLIALEMQ 60
           QL+ELN+RF+E NTELL C+A   P DLFAA+D+EKL+RL  +FYPKDF   +L  L  Q
Sbjct: 469 QLRELNDRFDEVNTELLSCMAAFSPIDLFAAYDQEKLVRLATKFYPKDFTTNELSKLPYQ 528

Query: 61  LDLY--------------RIGELARTMVNTKKDKVYPLVYQLVTLALILPVAIATVERVF 106
           L +Y               + EL+  +V+TK+ + Y +VY+L+ L LILPVA A+VERVF
Sbjct: 529 LTVYISHVRRDERFKNLKNLCELSVMLVSTKRHEQYYVVYKLLKLVLILPVATASVERVF 588

Query: 107 SSMTFVKNLLRNRMGDQWL 125
           S+M +VKN  RN+MGD++L
Sbjct: 589 STMNYVKNKQRNKMGDEYL 607

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116308850|emb|CAH65987.1| H1005F08.16 [Oryza sativa Indica Group]

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/138 (53%), Positives = 95/138 (68%), Gaps = 14/138 (10%)

Query: 2   QLQELNNRFNESNTELLICLARLCPNDLFAAFDKEKLLRLVEFYPKDFFAIDLIALEMQL 61
           QLQELN+RF+E NTELL+C+A   P D F+A+DKE L++L +FYPKDF   +L+ L  QL
Sbjct: 692 QLQELNDRFDEVNTELLLCMASFNPIDSFSAYDKENLVKLAQFYPKDFTETELLHLPFQL 751

Query: 62  DLY--------------RIGELARTMVNTKKDKVYPLVYQLVTLALILPVAIATVERVFS 107
            L+               + EL+  +V TKK   Y LVY+L+ L LILPVA A+VERVFS
Sbjct: 752 TLFINFVRRDERFKNVKNLVELSTMLVATKKHTAYELVYKLLKLVLILPVATASVERVFS 811

Query: 108 SMTFVKNLLRNRMGDQWL 125
           SM +VKN LRNRMG+Q+L
Sbjct: 812 SMNYVKNKLRNRMGEQYL 829

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536945|ref|XP_003536992.1| PREDICTED: uncharacterized protein LOC100819269 [Glycine max]

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 65/136 (47%), Positives = 89/136 (65%), Gaps = 14/136 (10%)

Query: 4   QELNNRFNESNTELLICLARLCPNDLFAAFDKEKLLRLVEFYPKDFFAIDLIALEMQLDL 63
           +ELN+RF E+NT LL C+  L P +LF+AFDK +L+   +FYP +F AI+L+ L+ QL+ 
Sbjct: 387 EELNDRFTETNTRLLFCMDCLNPTNLFSAFDKARLIEFAKFYPCEFSAINLVMLDNQLET 446

Query: 64  Y--------------RIGELARTMVNTKKDKVYPLVYQLVTLALILPVAIATVERVFSSM 109
           Y               I  L+  +V T +  VYPLVY L+ LA+ILPVA +T+ER FS+M
Sbjct: 447 YIIDMRSNVELSFLKGIKNLSEKLVETGRHIVYPLVYLLLKLAMILPVATSTMERAFSAM 506

Query: 110 TFVKNLLRNRMGDQWL 125
             VKN LRNR+GD W+
Sbjct: 507 KIVKNRLRNRLGDAWM 522

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357143537|ref|XP_003572955.1| PREDICTED: zinc finger MYM-type protein 1-like [Brachypodium distachyon]

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/137 (45%), Positives = 91/137 (66%), Gaps = 14/137 (10%)

Query: 3   LQELNNRFNESNTELLICLARLCPNDLFAAFDKEKLLRLVEFYPKDFFAIDLIALEMQLD 62
           + E+N+RFNE ++ELL+C++ L P++ FA F+ +KL+RL E Y  DF   D + L  QL 
Sbjct: 630 MTEINHRFNEVSSELLVCMSCLNPSNSFAMFNVDKLVRLAEIYEADFTISDRLMLRSQLQ 689

Query: 63  LY--------------RIGELARTMVNTKKDKVYPLVYQLVTLALILPVAIATVERVFSS 108
           ++               I +L++ MV TKKDK +PLVY+L+ L LILPVA A+VER+FS+
Sbjct: 690 IFILNIRRSEKFHGCSDISKLSQLMVETKKDKTFPLVYRLIELTLILPVATASVERIFSA 749

Query: 109 MTFVKNLLRNRMGDQWL 125
           M+ +K  LRN++ D WL
Sbjct: 750 MSIIKTDLRNKLSDGWL 766

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125605388|gb|EAZ44424.1| hypothetical protein OsJ_29039 [Oryza sativa Japonica Group]

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 64/138 (46%), Positives = 93/138 (67%), Gaps = 14/138 (10%)

Query: 2   QLQELNNRFNESNTELLICLARLCPNDLFAAFDKEKLLRLVEFYPKDFFAIDLIALEMQL 61
           QL+ELN+RF+E +T+LL+C+A     + F +FDKE L++L +FYP DF A D++ L +QL
Sbjct: 213 QLRELNDRFDEVDTDLLVCMASFNRTNSFGSFDKEMLVKLAQFYPNDFSANDIMHLPIQL 272

Query: 62  DLY--------------RIGELARTMVNTKKDKVYPLVYQLVTLALILPVAIATVERVFS 107
           D +               I EL+  +V+T K   Y LVY+L+ L L++PVA  +VERVFS
Sbjct: 273 DCFIIDMHRDERFREVNTIAELSVQLVDTNKHINYTLVYELLKLVLVIPVATTSVERVFS 332

Query: 108 SMTFVKNLLRNRMGDQWL 125
           +M +VKN LRNRMG+++L
Sbjct: 333 TMNYVKNKLRNRMGNEYL 350

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
TAIR|locus:2202165	769	AT1G19260 [Arabidopsis thalian	0.976	0.162	0.517	4.6e-29
TAIR|locus:2829849	536	AT3G29765 [Arabidopsis thalian	0.976	0.233	0.510	3.6e-28
TAIR|locus:4515102803	592	AT2G06541 [Arabidopsis thalian	0.953	0.206	0.489	1.1e-24
TAIR|locus:2118430	664	AT4G09660 [Arabidopsis thalian	0.851	0.164	0.504	2.2e-23
TAIR|locus:5019474775	393	AT3G31402 "AT3G31402" [Arabido	0.945	0.307	0.404	5.8e-19
TAIR|locus:2033523	496	AT1G41920 "AT1G41920" [Arabido	0.5	0.129	0.593	1.3e-13
TAIR|locus:2829839	505	AT3G29763 "AT3G29763" [Arabido	0.320	0.081	0.609	3.3e-07
TAIR|locus:5019474771	168	AT3G30235 "AT3G30235" [Arabido	0.304	0.232	0.564	7.4e-05

TAIR|locus:2202165 AT1G19260 [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 4.6e-29, P = 4.6e-29
 Identities = 72/139 (51%), Positives = 95/139 (68%)

Query:     1 MQLQELNNRFNESNTELLICLARLCPNDLFAAFDKEKLLRLVEFYPKDFFAIDLIALEMQ 60
             MQLQE N+RF+E N+ELLIC++ L P D F  FDK  L+RL EFYP DF  ++  +L+ Q
Sbjct:   596 MQLQEFNDRFDEVNSELLICMSSLSPIDSFRQFDKSMLVRLTEFYPDDFSFVERRSLDHQ 655

Query:    61 LDLYR--------------IGELARTMVNTKKDKVYPLVYQLVTLALILPVAIATVERVF 106
             L++Y               +G+LAR MV T+K   +PLVY+L+ ++LILPVA ATVER F
Sbjct:   656 LEIYLDNVKNDERFTDLKCLGDLARVMVETRKHLSHPLVYRLLKVSLILPVATATVERCF 715

Query:   107 SSMTFVKNLLRNRMGDQWL 125
             S+M FVK  LRNR+GD +L
Sbjct:   716 SAMNFVKTTLRNRIGDMFL 734

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2829849 AT3G29765 [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 3.6e-28, P = 3.6e-28
 Identities = 71/139 (51%), Positives = 92/139 (66%)

Query:     1 MQLQELNNRFNESNTELLICLARLCPNDLFAAFDKEKLLRLVEFYPKDFFAIDLIALEMQ 60
             MQLQE N+ F+E N+ELLIC++ L P D F  FDK  L+RL EFYP DF  ++  +L+ Q
Sbjct:   363 MQLQEFNDCFDELNSELLICMSSLSPIDSFRQFDKSMLVRLTEFYPDDFSFVERRSLDHQ 422

Query:    61 LDLY--------------RIGELARTMVNTKKDKVYPLVYQLVTLALILPVAIATVERVF 106
             L++Y               +G+LAR MV T+K   +PLVY+L+ L+LILPVA ATV R F
Sbjct:   423 LEIYLDNVKNDERFTDLEHLGDLARVMVETRKHLSHPLVYRLLKLSLILPVATATVVRCF 482

Query:   107 SSMTFVKNLLRNRMGDQWL 125
             S+M FVK  LRNR GD +L
Sbjct:   483 SAMNFVKTTLRNRFGDVFL 501

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:4515102803 AT2G06541 [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.1e-24, P = 1.1e-24
 Identities = 67/137 (48%), Positives = 88/137 (64%)

Query:     3 LQELNNRFNESNTELLICLARLCPNDLFAAFDKEKLLRLVEFYPKDFFAIDLIALEMQLD 62
             L E N+ F+E NTELL C+A L P DLF  FD+ K++RL EFYP+DF  +D  +LE QL 
Sbjct:   422 LLEYNDCFDEVNTELLGCVASLSPTDLFREFDQLKVMRLAEFYPQDFTRVDWRSLEHQLG 481

Query:    63 LY--------------RIGELARTMVNTKKDKVYPLVYQLVTLALILPVAIATVERVFSS 108
             LY               +G+LAR M+ T+K   +P VY+L+ + L LP+A ATVER FS+
Sbjct:   482 LYIDNIREDDRFANLKSLGDLARVMIETRKHLSHPQVYRLLKVVLTLPIATATVERCFSA 541

Query:   109 MTFVKNLLRNRMGDQWL 125
              T VK  LRNR+ DQ+L
Sbjct:   542 -TVVKTTLRNRISDQFL 557

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2118430 AT4G09660 [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 2.2e-23, P = 2.2e-23
 Identities = 62/123 (50%), Positives = 82/123 (66%)

Query:     1 MQLQELNNRFNESNTELLICLARLCPNDLFAAFDKEKLLRLVEFYPKDFFAIDLIALEMQ 60
             MQLQE N+RF+E N+ELLIC++ L P D F  FDK  L+RL EFYP +F  ++  +L+ Q
Sbjct:   540 MQLQEFNDRFDEVNSELLICMSSLSPIDSFCQFDKSMLVRLTEFYPDEFSFVERRSLDHQ 599

Query:    61 LDLYR--------------IGELARTMVNTKKDKVYPLVYQLVTLALILPVAIATVERVF 106
             L++Y                G+LAR MV T+K   +PLVY+L+ L+LILPVA ATVER F
Sbjct:   600 LEIYLDNVKNDERFTDLKCFGDLARVMVETRKHLSHPLVYRLLKLSLILPVATATVERCF 659

Query:   107 SSM 109
             S+M
Sbjct:   660 SAM 662

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:5019474775 AT3G31402 "AT3G31402" [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 5.8e-19, P = 5.8e-19
 Identities = 55/136 (40%), Positives = 81/136 (59%)

Query:     3 LQELNNRFNESNTELLICLARLCPNDLFAAFDKEKLLRLVEFYPKDFFAIDLIALEMQLD 62
             +++ ++ FNE NTELLIC A L P D F  FD  KL+RL +FY  DF   + I++E +L 
Sbjct:   238 IKKFDDHFNEVNTELLICAASLSPIDAFYEFDHSKLVRLSKFYQVDFSLGEFISIEKELS 297

Query:    63 LY--------------RIGELARTMVNTKKDKVYPLVYQLVTLALILPVAIATVERVFSS 108
             +Y               +G++A+ +V T+K   YP  Y+L+ L LIL VA ATVER FS+
Sbjct:   298 IYIDTVRNDERFSNLKNLGDIAQKVVETRKHLSYPFGYRLLKLVLILHVATATVERCFSA 357

Query:   109 MTFVKNLLRNRMGDQW 124
             M  +++ + N  GD +
Sbjct:   358 MK-IRSPVLNYQGDDF 372

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2033523 AT1G41920 "AT1G41920" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 38/64 (59%), Positives = 47/64 (73%)

Query:     1 MQLQELNNRFNESNTELLICLARLCPNDLFAAFDKEKLLRLVEFYPKDFFAIDLIALEMQ 60
             MQ+QE N+RF+E NTELL C+A L P D F  FD+ K+LRL EFYP+DF  +D  +LE Q
Sbjct:   421 MQIQEFNDRFDEVNTELLSCVASLSPIDSFHEFDQLKVLRLSEFYPQDFTHVDRRSLEHQ 480

Query:    61 LDLY 64
             L LY
Sbjct:   481 LGLY 484

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2829839 AT3G29763 "AT3G29763" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 3.3e-07, P = 3.3e-07
 Identities = 25/41 (60%), Positives = 31/41 (75%)

Query:     1 MQLQELNNRFNESNTELLICLARLCPNDLFAAFDKEKLLRL 41
             MQLQE N+RF+E N+ELLIC++ L P D F  FDK  L+RL
Sbjct:   464 MQLQEFNDRFDELNSELLICMSSLSPIDSFRQFDKSMLVRL 504

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:5019474771 AT3G30235 "AT3G30235" [Arabidopsis thaliana (taxid:3702)]

 Score = 95 (38.5 bits), Expect = 7.4e-05, P = 7.4e-05
 Identities = 22/39 (56%), Positives = 28/39 (71%)

Query:    84 LVYQLVTLALILPVAIATVERVFSSMTFVKNLLRNRMGD 122
             ++ +L+ L LIL VA ATVER FS+M  VK   RNR+GD
Sbjct:   130 VLMRLLKLILILHVATATVERCFSAMKIVKTDRRNRIGD 168


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.328   0.141   0.405    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      128       128   0.00091  102 3  11 22  0.43    30
                                                     29  0.41    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  548 (58 KB)
  Total size of DFA:  115 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.58u 0.14s 12.72t   Elapsed:  00:00:01
  Total cpu time:  12.58u 0.14s 12.72t   Elapsed:  00:00:01
  Start:  Fri May 10 23:45:42 2013   End:  Fri May 10 23:45:43 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	128
pfam05699	82	pfam05699, Dimer_Tnp_hAT, hAT family dimerisation	8e-05

>gnl|CDD|218702 pfam05699, Dimer_Tnp_hAT, hAT family dimerisation domain

 Score = 38.4 bits (90), Expect = 8e-05
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 82  YPLVYQLVTLALILPVAIATVERVFSSMTFVKNLLRNRMGDQ 123
           YP + +L    L +PV+ A  ER FS  T  K LL +R   +
Sbjct: 31  YPNLSKLARDILSIPVSSAASERSFS--TLGKVLLESRNRLE 70

This dimerisation domain is found at the C terminus of the transposases of elements belonging to the Activator superfamily (hAT element superfamily). The isolated dimerisation domain forms extremely stable dimers in vitro. Length = 82

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	128
PF05699	86	Dimer_Tnp_hAT: hAT family C-terminal dimerisation	99.3
KOG1121	641	consensus Tam3-transposase (Ac family) [Replicatio	93.93

>PF05699 Dimer_Tnp_hAT: hAT family C-terminal dimerisation region; InterPro: IPR008906 This dimerisation domain is found at the C terminus of the transposases of elements belonging to the Activator superfamily (hAT element superfamily)

Probab=99.30  E-value=1.1e-12  Score=81.65  Aligned_cols=49  Identities=27%  Similarity=0.356  Sum_probs=40.1

Q ss_pred             cCCCchhHHHHHHHhhhcccccchhhhhhhhhhhhhhhhccCCCccccc
Q 043933           78 KDKVYPLVYQLVTLALILPVAIATVERVFSSMTFVKNLLRNRMGDQWLM  126 (128)
Q Consensus        78 ~~~~fpnl~~ll~i~ltlPvssa~~ERsFS~lk~iKt~lRstm~~~rL~  126 (128)
                      ....||+++++++.++++|+|+|.+||+||+++++++.-|++++.+.+.
T Consensus        29 ~~~~fP~L~~lA~~~Lsip~ss~~~ER~FS~~~~~~~~~r~~l~~~~~~   77 (86)
T PF05699_consen   29 NSSRFPNLAKLARKYLSIPASSASSERSFSAMGKILTRNRNRLSPENVE   77 (86)
T ss_dssp             TTTTSHHHHHHHHHHHTS-S-TTTTHHHHHHTHHHHH-TTT---HHHHH
T ss_pred             CchhchHHHHHHHHHHHhhccccccccccchhhcccccCccCCCHHHHH
Confidence            6778999999999999999999999999999999999999999987654

The isolated dimerisation domain forms extremely stable dimers in vitro [].; GO: 0046983 protein dimerization activity; PDB: 2BW3_A.

>KOG1121 consensus Tam3-transposase (Ac family) [Replication, recombination and repair]

Probab=93.93  E-value=0.026  Score=46.66  Aligned_cols=47  Identities=23%  Similarity=0.248  Sum_probs=43.6

Q ss_pred             CCchhHHHHHHHhhhcccccchhhhhhhhhhhhhhhhccCCCccccc
Q 043933           80 KVYPLVYQLVTLALILPVAIATVERVFSSMTFVKNLLRNRMGDQWLM  126 (128)
Q Consensus        80 ~~fpnl~~ll~i~ltlPvssa~~ERsFS~lk~iKt~lRstm~~~rL~  126 (128)
                      .-||.+.+++.-++.+|+++...|++||.-.++.+..|+.+..+...
T Consensus       570 ~~y~~ls~~a~d~l~~p~~~~~~e~~f~~~~~~~~~~r~~l~~~~~~  616 (641)
T KOG1121|consen  570 TRYPELSSMARDILSIPITSVASESSFSIGGRVLNKYRSRLLPENVQ  616 (641)
T ss_pred             cccchHHHHHHHHHcCcccCccchhhcccCceecCchhccCCchhhH
Confidence            37999999999999999999999999999999999999999887643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	128
2bw3_A	534	Transposase; DNA recombination, transposition; 2.0	98.52

>2bw3_A Transposase; DNA recombination, transposition; 2.0A {Musca domestica} SCOP: a.270.1.1 c.55.3.12 PDB: 2bw3_B

Probab=98.52  E-value=3.3e-08  Score=78.13  Aligned_cols=50  Identities=32%  Similarity=0.385  Sum_probs=46.7

Q ss_pred             cCCCchhHHHHHHHhhhcccccchhhhhhhhhhhhhhhhccCCCcccccC
Q 043933           78 KDKVYPLVYQLVTLALILPVAIATVERVFSSMTFVKNLLRNRMGDQWLMI  127 (128)
Q Consensus        78 ~~~~fpnl~~ll~i~ltlPvssa~~ERsFS~lk~iKt~lRstm~~~rL~~  127 (128)
                      ....||++.++++-+|++|+|++.|||.||..+++.+..||+++.++++.
T Consensus       472 ~~~~~p~L~~~a~~~l~~p~ss~~~er~fs~~~~~~~~~r~~l~~~~~~~  521 (534)
T 2bw3_A          472 NSKKYPKLSKLALSLLSIPASSAASERTFSLAGNIITEKRNRIGQQTVDS  521 (534)
T ss_dssp             TTTTSHHHHHHHHHHHTSCSCTTTTHHHHHHTHHHHHCTTTCCCHHHHHH
T ss_pred             CCccCChHHHHHHHHhcCCcccccccccccccccccCcccccCCHHHHHH
Confidence            35689999999999999999999999999999999999999999998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	128
d2bw3a2	447	c.55.3.12 (A:163-609) Transposase Hermes, catalyti	5e-08

>d2bw3a2 c.55.3.12 (A:163-609) Transposase Hermes, catalytic domain {House fly (Musca domestica) [TaxId: 7370]} Length = 447

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Hermes transposase-like
domain: Transposase Hermes, catalytic domain
species: House fly (Musca domestica) [TaxId: 7370]

 Score = 47.7 bits (112), Expect = 5e-08
 Identities = 25/134 (18%), Positives = 45/134 (33%), Gaps = 9/134 (6%)

Query: 1   MQLQELNNRFNESNTELLICLARLCPNDLFAAFDKEKLLRLVEFYPKDFFAIDLIALEMQ 60
           ++L    + FNE +   L        N +      + +     F+P+             
Sbjct: 299 LELINRMSSFNELSATQLNQSDSNSHNSIDLTSHSKDISTTSFFFPQLTQNNSREPPVCP 358

Query: 61  LDLYRIGELARTMVNTKKD---------KVYPLVYQLVTLALILPVAIATVERVFSSMTF 111
            D +        +++             K YP + +L    L +P + A  ER FS    
Sbjct: 359 SDEFEFYRKEIVILSEDFKVMEWWNLNSKKYPKLSKLALSLLSIPASSAASERTFSLAGN 418

Query: 112 VKNLLRNRMGDQWL 125
           +    RNR+G Q +
Sbjct: 419 IITEKRNRIGQQTV 432

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	128
d2bw3a2	447	Transposase Hermes, catalytic domain {House fly (M	99.42

>d2bw3a2 c.55.3.12 (A:163-609) Transposase Hermes, catalytic domain {House fly (Musca domestica) [TaxId: 7370]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Hermes transposase-like
domain: Transposase Hermes, catalytic domain
species: House fly (Musca domestica) [TaxId: 7370]

Probab=99.42  E-value=2e-14  Score=107.52  Aligned_cols=50  Identities=32%  Similarity=0.385  Sum_probs=46.9

Q ss_pred             cCCCchhHHHHHHHhhhcccccchhhhhhhhhhhhhhhhccCCCcccccC
Q 043933           78 KDKVYPLVYQLVTLALILPVAIATVERVFSSMTFVKNLLRNRMGDQWLMI  127 (128)
Q Consensus        78 ~~~~fpnl~~ll~i~ltlPvssa~~ERsFS~lk~iKt~lRstm~~~rL~~  127 (128)
                      ....||+++++++.++++|+|+|+|||+||++++|||++||+|+++|++.
T Consensus       385 ~~~~yP~L~~lA~~~Lsip~tsa~~ER~FS~~~~i~t~~R~~L~~e~le~  434 (447)
T d2bw3a2         385 NSKKYPKLSKLALSLLSIPASSAASERTFSLAGNIITEKRNRIGQQTVDS  434 (447)
T ss_dssp             TTTTSHHHHHHHHHHHTSCSCTTTTHHHHHHTHHHHHCTTTCCCHHHHHH
T ss_pred             CCcccHHHHHHHHHHhCCCCcccHHHHHHhccccccCcccCCCCHHHHHH
Confidence            35679999999999999999999999999999999999999999999863