Citrus Sinensis ID: 043973


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120----
MWNVIPRGKIRNKMYKVDYILGVNPLKMSYMVGFGPNFSRRIHHRGSSLLSLANHPQSIRCDGGFEPFFHSSNPNILVGAIVGGPNQNDGFPDDRSDYSHSEPATYINAAMVGPLAYFAGGKSG
cccccHHHHHHHHHHHHHHHcccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcHHHHHHHHHHHcccccc
cccccHHHHHHHHHHHHHHHHcccccccccEcccccccccccEcHHHHccccccccccEcccccccccccccccccccccEcccccccccccccccccccccccHHHHHHHHHHHHHHHccccc
mwnviprgkirnkmYKVDYILGvnplkmsymvgfgpnfsrrihhrgssllslanhpqsircdggfepffhssnpnilvgaivggpnqndgfpddrsdyshsepatyinaamvgplayfaggksg
mwnviprgkirnkmykVDYILGVNPLKMSYMVGFGPNFSRRIHHRGSSLLSLANHPQSIRCDGGFEPFFHSSNPNILVGAIVGGPNQNDGFPDDRSDYSHSEPATYINAAMVGPLAYFAGGKSG
MWNVIPRGKIRNKMYKVDYILGVNPLKMSYMVGFGPNFSRRIHHRGSSLLSLANHPQSIRCDGGFEPFFHSSNPNILVGAIVGGPNQNDGFPDDRSDYSHSEPATYINAAMVGPLAYFAGGKSG
***VIPRGKIRNKMYKVDYILGVNPLKMSYMVGFGPNFSRRIHHRGSSLLSLANHPQSIRCDGGFEPFFHSSNPNILVGAIVG*********************TYINAAMVGPLAYFA*****
*WNVIPRGKIRNKMYKVDYILGVNPLKMSYMVGFGPNFSRRIHHRGSSLLSLANHPQSIRCDGGFEPFFHSSNPNILVGAIVGGPNQNDGFPDDRSDYSHSEPATYINAAMVGPLAYFAGG***
MWNVIPRGKIRNKMYKVDYILGVNPLKMSYMVGFGPNFSRRIHHRGSSLLSLANHPQSIRCDGGFEPFFHSSNPNILVGAIVGGPNQNDGFPDDRSDYSHSEPATYINAAMVGPLAYFAGGKSG
**NVIPRGKIRNKMYKVDYILGVNPLKMSYMVGFGPNFSRRIHHRGSSLLSLANHPQSIRCDGGFEPFFHSSNPNILVGAIVGGPNQNDGFPDDRSDYSHSEPATYINAAMVGPLAYFAGGK**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MWNVIPRGKIRNKMYKVDYILGVNPLKMSYMVGFGPNFSRRIHHRGSSLLSLANHPQSIRCDGGFEPFFHSSNPNILVGAIVGGPNQNDGFPDDRSDYSHSEPATYINAAMVGPLAYFAGGKSG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query124 2.2.26 [Sep-21-2011]
Q9C9H5484 Endoglucanase 9 OS=Arabid yes no 0.967 0.247 0.661 1e-40
Q2V4L8484 Endoglucanase 3 OS=Arabid no no 0.967 0.247 0.636 1e-38
O81416516 Endoglucanase 17 OS=Arabi no no 0.943 0.226 0.613 3e-35
Q9SRX3501 Endoglucanase 1 OS=Arabid no no 0.943 0.233 0.630 7e-35
Q8LQ92499 Endoglucanase 3 OS=Oryza yes no 0.838 0.208 0.628 6e-33
P05522494 Endoglucanase 1 OS=Persea N/A no 0.951 0.238 0.571 3e-32
Q7XTH4500 Endoglucanase 11 OS=Oryza no no 0.846 0.21 0.598 4e-32
P23666130 Endoglucanase 2 (Fragment N/A no 0.943 0.9 0.576 8e-32
Q6YXT7523 Endoglucanase 19 OS=Oryza no no 0.838 0.198 0.616 1e-31
Q9SZ90478 Endoglucanase 18 OS=Arabi no no 0.870 0.225 0.581 5e-31
>sp|Q9C9H5|GUN9_ARATH Endoglucanase 9 OS=Arabidopsis thaliana GN=CEL3 PE=1 SV=1 Back     alignment and function desciption
 Score =  165 bits (417), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 80/121 (66%), Positives = 93/121 (76%), Gaps = 1/121 (0%)

Query: 4   VIPRGKIRNKMYKVDYILGVNPLKMSYMVGFGPNFSRRIHHRGSSLLSLANHPQSIRCDG 63
           ++P   I     +VDYILG NP+KMSYMVGF  NF +RIHHR SSL S A   QS+ C+G
Sbjct: 363 IVPNALISLSKRQVDYILGDNPIKMSYMVGFSSNFPKRIHHRASSLPSHALRSQSLGCNG 422

Query: 64  GFEPFF-HSSNPNILVGAIVGGPNQNDGFPDDRSDYSHSEPATYINAAMVGPLAYFAGGK 122
           GF+ F+  + NPNIL GAIVGGPNQNDG+PD R DYSH+EPATYINAA VGPLAYFA G+
Sbjct: 423 GFQSFYTQNPNPNILTGAIVGGPNQNDGYPDQRDDYSHAEPATYINAAFVGPLAYFAAGR 482

Query: 123 S 123
           S
Sbjct: 483 S 483





Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 4
>sp|Q2V4L8|GUN3_ARATH Endoglucanase 3 OS=Arabidopsis thaliana GN=CEL5 PE=2 SV=2 Back     alignment and function description
>sp|O81416|GUN17_ARATH Endoglucanase 17 OS=Arabidopsis thaliana GN=At4g02290 PE=2 SV=1 Back     alignment and function description
>sp|Q9SRX3|GUN1_ARATH Endoglucanase 1 OS=Arabidopsis thaliana GN=CEL2 PE=2 SV=1 Back     alignment and function description
>sp|Q8LQ92|GUN3_ORYSJ Endoglucanase 3 OS=Oryza sativa subsp. japonica GN=GLU8 PE=2 SV=1 Back     alignment and function description
>sp|P05522|GUN1_PERAE Endoglucanase 1 OS=Persea americana GN=CEL1 PE=2 SV=1 Back     alignment and function description
>sp|Q7XTH4|GUN11_ORYSJ Endoglucanase 11 OS=Oryza sativa subsp. japonica GN=GLU4 PE=2 SV=3 Back     alignment and function description
>sp|P23666|GUN2_PERAE Endoglucanase 2 (Fragment) OS=Persea americana GN=CEL2 PE=2 SV=1 Back     alignment and function description
>sp|Q6YXT7|GUN19_ORYSJ Endoglucanase 19 OS=Oryza sativa subsp. japonica GN=Os08g0114200 PE=2 SV=1 Back     alignment and function description
>sp|Q9SZ90|GUN18_ARATH Endoglucanase 18 OS=Arabidopsis thaliana GN=At4g09740 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query124
2290683 488 basic cellulase [Citrus sinensis] 0.879 0.223 0.945 3e-54
50346664 486 Cel9B [Populus tremula x Populus tremulo 0.943 0.240 0.764 1e-46
224127722 481 predicted protein [Populus trichocarpa] 0.879 0.226 0.810 1e-46
356517804 484 PREDICTED: endoglucanase 9-like [Glycine 0.846 0.216 0.841 2e-45
224158277106 predicted protein [Populus trichocarpa] 0.838 0.981 0.839 5e-45
728483 486 endo-1,4-beta-glucanase [Pisum sativum] 0.862 0.220 0.807 1e-44
356508154 484 PREDICTED: endoglucanase 9-like [Glycine 0.846 0.216 0.813 2e-44
449447557 491 PREDICTED: endoglucanase 9-like [Cucumis 0.846 0.213 0.794 2e-44
357456091 484 Endoglucanase [Medicago truncatula] gi|3 0.846 0.216 0.813 5e-44
33943180 497 endo-1,4-beta-glucanase [Malus x domesti 0.846 0.211 0.803 9e-44
>gi|2290683|gb|AAB65156.1| basic cellulase [Citrus sinensis] Back     alignment and taxonomy information
 Score =  215 bits (548), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 105/111 (94%), Positives = 107/111 (96%), Gaps = 2/111 (1%)

Query: 16  KVDYILGVNPLKMSYMVGFGPNFSRRIHHRGSSLLSLANHPQSIRCDGGFEPFFHSS--N 73
           +VDYILGVNP+KMSYMVGFGPNF RRIHHRGSSL SLANHPQSIRCDGGFEPFFHSS  N
Sbjct: 378 QVDYILGVNPIKMSYMVGFGPNFPRRIHHRGSSLPSLANHPQSIRCDGGFEPFFHSSNPN 437

Query: 74  PNILVGAIVGGPNQNDGFPDDRSDYSHSEPATYINAAMVGPLAYFAGGKSG 124
           PNILVGAIVGGPNQNDGFPDDRSDYSHSEPATYINAAMVGPLAYFAGGKSG
Sbjct: 438 PNILVGAIVGGPNQNDGFPDDRSDYSHSEPATYINAAMVGPLAYFAGGKSG 488




Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|50346664|gb|AAT75042.1| Cel9B [Populus tremula x Populus tremuloides] Back     alignment and taxonomy information
>gi|224127722|ref|XP_002329161.1| predicted protein [Populus trichocarpa] gi|222870942|gb|EEF08073.1| predicted protein [Populus trichocarpa] gi|347466581|gb|AEO97203.1| endo-1,4-beta-glucanase [Populus trichocarpa] gi|347466635|gb|AEO97230.1| endo-1,4-beta-glucanase [Populus trichocarpa] gi|429326594|gb|AFZ78637.1| korrigan [Populus tomentosa] Back     alignment and taxonomy information
>gi|356517804|ref|XP_003527576.1| PREDICTED: endoglucanase 9-like [Glycine max] Back     alignment and taxonomy information
>gi|224158277|ref|XP_002337954.1| predicted protein [Populus trichocarpa] gi|222870069|gb|EEF07200.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|728483|gb|AAA96135.1| endo-1,4-beta-glucanase [Pisum sativum] Back     alignment and taxonomy information
>gi|356508154|ref|XP_003522825.1| PREDICTED: endoglucanase 9-like [Glycine max] Back     alignment and taxonomy information
>gi|449447557|ref|XP_004141534.1| PREDICTED: endoglucanase 9-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357456091|ref|XP_003598326.1| Endoglucanase [Medicago truncatula] gi|355487374|gb|AES68577.1| Endoglucanase [Medicago truncatula] Back     alignment and taxonomy information
>gi|33943180|gb|AAQ55294.1| endo-1,4-beta-glucanase [Malus x domestica] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query124
TAIR|locus:2825314484 CEL3 "cellulase 3" [Arabidopsi 0.967 0.247 0.661 8.7e-40
TAIR|locus:2017704484 CEL5 "cellulase 5" [Arabidopsi 0.967 0.247 0.636 7e-38
TAIR|locus:2137824516 GH9B13 "glycosyl hydrolase 9B1 0.943 0.226 0.613 8.3e-35
TAIR|locus:2024670501 CEL2 "cellulase 2" [Arabidopsi 0.943 0.233 0.630 1.7e-34
TAIR|locus:2120242497 GH9B18 "glycosyl hydrolase 9B1 0.919 0.229 0.559 2.6e-31
TAIR|locus:2128394479 GH9B15 "glycosyl hydrolase 9B1 0.862 0.223 0.567 3.8e-30
TAIR|locus:2118519478 GH9B14 "glycosyl hydrolase 9B1 0.870 0.225 0.581 4.9e-30
TAIR|locus:2028015489 GH9B6 "glycosyl hydrolase 9B6" 0.838 0.212 0.561 1.1e-28
TAIR|locus:2033600492 GH9B1 "glycosyl hydrolase 9B1" 0.838 0.211 0.580 2.1e-28
TAIR|locus:2042461492 GH9B12 "glycosyl hydrolase 9B1 0.838 0.211 0.537 6e-28
TAIR|locus:2825314 CEL3 "cellulase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 80/121 (66%), Positives = 93/121 (76%)

Query:     4 VIPRGKIRNKMYKVDYILGVNPLKMSYMVGFGPNFSRRIHHRGSSLLSLANHPQSIRCDG 63
             ++P   I     +VDYILG NP+KMSYMVGF  NF +RIHHR SSL S A   QS+ C+G
Sbjct:   363 IVPNALISLSKRQVDYILGDNPIKMSYMVGFSSNFPKRIHHRASSLPSHALRSQSLGCNG 422

Query:    64 GFEPFF-HSSNPNILVGAIVGGPNQNDGFPDDRSDYSHSEPATYINAAMVGPLAYFAGGK 122
             GF+ F+  + NPNIL GAIVGGPNQNDG+PD R DYSH+EPATYINAA VGPLAYFA G+
Sbjct:   423 GFQSFYTQNPNPNILTGAIVGGPNQNDGYPDQRDDYSHAEPATYINAAFVGPLAYFAAGR 482

Query:   123 S 123
             S
Sbjct:   483 S 483




GO:0003824 "catalytic activity" evidence=IEA
GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0005618 "cell wall" evidence=IDA
GO:0009505 "plant-type cell wall" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
GO:0009506 "plasmodesma" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
TAIR|locus:2017704 CEL5 "cellulase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2137824 GH9B13 "glycosyl hydrolase 9B13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024670 CEL2 "cellulase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120242 GH9B18 "glycosyl hydrolase 9B18" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2128394 GH9B15 "glycosyl hydrolase 9B15" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118519 GH9B14 "glycosyl hydrolase 9B14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028015 GH9B6 "glycosyl hydrolase 9B6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2033600 GH9B1 "glycosyl hydrolase 9B1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042461 GH9B12 "glycosyl hydrolase 9B12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P23666GUN2_PERAE3, ., 2, ., 1, ., 40.57620.94350.9N/Ano

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.1.4LOW CONFIDENCE prediction!
3rd Layer3.2.10.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query124
PLN02175484 PLN02175, PLN02175, endoglucanase 6e-52
PLN02266510 PLN02266, PLN02266, endoglucanase 1e-51
PLN02613498 PLN02613, PLN02613, endoglucanase 1e-47
pfam00759437 pfam00759, Glyco_hydro_9, Glycosyl hydrolase famil 1e-44
PLN02308492 PLN02308, PLN02308, endoglucanase 4e-43
PLN03009495 PLN03009, PLN03009, cellulase 8e-40
PLN00119489 PLN00119, PLN00119, endoglucanase 2e-38
PLN02171 629 PLN02171, PLN02171, endoglucanase 4e-37
PLN02340 614 PLN02340, PLN02340, endoglucanase 9e-35
PLN02420525 PLN02420, PLN02420, endoglucanase 7e-31
PLN02345469 PLN02345, PLN02345, endoglucanase 5e-30
PLN02909486 PLN02909, PLN02909, Endoglucanase 2e-28
>gnl|CDD|177832 PLN02175, PLN02175, endoglucanase Back     alignment and domain information
 Score =  169 bits (430), Expect = 6e-52
 Identities = 79/121 (65%), Positives = 92/121 (76%), Gaps = 1/121 (0%)

Query: 4   VIPRGKIRNKMYKVDYILGVNPLKMSYMVGFGPNFSRRIHHRGSSLLSLANHPQSIRCDG 63
           ++P   I     +VDYILG NP+KMSYMVGF  NF +RIHHR SSL S A    S+ C+G
Sbjct: 363 IVPNALISLSKRQVDYILGDNPIKMSYMVGFSSNFPKRIHHRASSLPSHALRSNSLGCNG 422

Query: 64  GFEPFF-HSSNPNILVGAIVGGPNQNDGFPDDRSDYSHSEPATYINAAMVGPLAYFAGGK 122
           GF+ F+  + NPNIL GAIVGGPNQNDG+PD R DYSH+EPATYINAA VGPLAYFA G+
Sbjct: 423 GFQSFYTQNPNPNILTGAIVGGPNQNDGYPDQRDDYSHAEPATYINAAFVGPLAYFAAGR 482

Query: 123 S 123
           S
Sbjct: 483 S 483


Length = 484

>gnl|CDD|215150 PLN02266, PLN02266, endoglucanase Back     alignment and domain information
>gnl|CDD|215331 PLN02613, PLN02613, endoglucanase Back     alignment and domain information
>gnl|CDD|216104 pfam00759, Glyco_hydro_9, Glycosyl hydrolase family 9 Back     alignment and domain information
>gnl|CDD|177943 PLN02308, PLN02308, endoglucanase Back     alignment and domain information
>gnl|CDD|166650 PLN03009, PLN03009, cellulase Back     alignment and domain information
>gnl|CDD|177732 PLN00119, PLN00119, endoglucanase Back     alignment and domain information
>gnl|CDD|215115 PLN02171, PLN02171, endoglucanase Back     alignment and domain information
>gnl|CDD|215194 PLN02340, PLN02340, endoglucanase Back     alignment and domain information
>gnl|CDD|178040 PLN02420, PLN02420, endoglucanase Back     alignment and domain information
>gnl|CDD|177979 PLN02345, PLN02345, endoglucanase Back     alignment and domain information
>gnl|CDD|178497 PLN02909, PLN02909, Endoglucanase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 124
PLN02308492 endoglucanase 100.0
PLN02266510 endoglucanase 100.0
PLN00119489 endoglucanase 100.0
PLN02171 629 endoglucanase 100.0
PLN02909486 Endoglucanase 100.0
PLN02340 614 endoglucanase 100.0
PLN02613498 endoglucanase 100.0
PLN02175484 endoglucanase 100.0
PLN02420525 endoglucanase 100.0
PLN03009495 cellulase 100.0
PLN02345469 endoglucanase 100.0
PF00759444 Glyco_hydro_9: Glycosyl hydrolase family 9; InterP 100.0
>PLN02308 endoglucanase Back     alignment and domain information
Probab=100.00  E-value=4.2e-47  Score=324.61  Aligned_cols=119  Identities=56%  Similarity=0.957  Sum_probs=112.0

Q ss_pred             cChhHHHHHHHhcchhhcCCCCCCCceEEeeCCCCCCCcccCCCCccccCCCCCcccCCCCCccccCCCC--CCCcceee
Q 043973            4 VIPRGKIRNKMYKVDYILGVNPLKMSYMVGFGPNFSRRIHHRGSSLLSLANHPQSIRCDGGFEPFFHSSN--PNILVGAI   81 (124)
Q Consensus         4 ~~~~~y~~~a~~QidYiLG~Np~g~SyvvG~G~~~P~~pHHR~ss~p~~~~~p~~~~c~~g~~~~~~~~~--p~~l~Gal   81 (124)
                      +++++|++||++|||||||+||+++|||||||+|+|++||||+||||+..++|..++|.+|+ .|+++++  ||+|+|||
T Consensus       370 ~~~~~y~~fA~~QidYiLG~NP~~~SYVVGfG~n~P~~pHHR~as~p~~~~~~~~~~c~~~~-~~~~~~~pnp~vL~GAl  448 (492)
T PLN02308        370 ASPALLRQVAKRQVDYILGDNPLRMSYMVGYGSRFPQRIHHRGSSLPSVAAHPARIGCKEGS-RYFLSPNPNPNLLVGAV  448 (492)
T ss_pred             cCHHHHHHHHHhccceeccCCCCCCceEeccCCCCCCchhhcCCCCCCcccCccccCCCCCc-cccCCCCCCcceeecee
Confidence            46789999999999999999999999999999999999999999999999999999999998 4877765  89999999


Q ss_pred             ecCCCCCCCccccCCCcccccccccchhhHHHHHHHhhcCCC
Q 043973           82 VGGPNQNDGFPDDRSDYSHSEPATYINAAMVGPLAYFAGGKS  123 (124)
Q Consensus        82 VGGP~~~d~y~D~r~~y~~nEvaid~NA~lv~~lA~l~~~~~  123 (124)
                      |||||.+|.|.|+|.+|++|||||||||+||++||+|....+
T Consensus       449 VGGPd~~d~y~D~r~~y~~nEva~dyNA~~vg~la~l~~~~~  490 (492)
T PLN02308        449 VGGPNVTDAFPDSRPYFQQSEPTTYINAPLVGLLAYFSAHPN  490 (492)
T ss_pred             ecCCCCCCCCCccccccccCceeeehhhHHHHHHHHHhcCCC
Confidence            999999999999999999999999999999999999986554



>PLN02266 endoglucanase Back     alignment and domain information
>PLN00119 endoglucanase Back     alignment and domain information
>PLN02171 endoglucanase Back     alignment and domain information
>PLN02909 Endoglucanase Back     alignment and domain information
>PLN02340 endoglucanase Back     alignment and domain information
>PLN02613 endoglucanase Back     alignment and domain information
>PLN02175 endoglucanase Back     alignment and domain information
>PLN02420 endoglucanase Back     alignment and domain information
>PLN03009 cellulase Back     alignment and domain information
>PLN02345 endoglucanase Back     alignment and domain information
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query124
1ia6_A441 Crystal Structure Of The Cellulase Cel9m Of C. Cell 2e-15
1ks8_A433 The Structure Of Endoglucanase From Termite, Nasuti 1e-13
2yik_A611 Catalytic Domain Of Clostridium Thermocellum Celt L 8e-11
1js4_A 605 EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA Le 2e-10
2xfg_A466 Reassembly And Co-Crystallization Of A Family 9 Pro 4e-09
4dod_A475 The Structure Of Cbescii Cela Gh9 Module Length = 4 7e-09
1k72_A 614 The X-ray Crystal Structure Of Cel9g Complexed With 3e-06
1ga2_A 614 The Crystal Structure Of Endoglucanase 9g From Clos 3e-06
3ez8_A537 Crystal Structure Of Endoglucanase Cel9a From The T 8e-05
>pdb|1IA6|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C. Cellulolyticum Length = 441 Back     alignment and structure

Iteration: 1

Score = 77.4 bits (189), Expect = 2e-15, Method: Composition-based stats. Identities = 45/109 (41%), Positives = 63/109 (57%), Gaps = 16/109 (14%) Query: 16 KVDYILGVNPLKMSYMVGFGPNFSRRIHHRGSSLLSLANHPQSIRCDGGFEPFFHSSNPN 75 +VDYILG NP MSY++G+G N+ HHR ++ + AN + +P H Sbjct: 336 QVDYILGDNPANMSYIIGYGSNWCIHPHHRAANGYTYANGDNA-------KPAKH----- 383 Query: 76 ILVGAIVGGPNQNDGFPDDRSDYSHSEPATYINAAMVGPLA----YFAG 120 +L GA+VGGP+QND F DD + Y ++E A NA +VG LA +F G Sbjct: 384 LLTGALVGGPDQNDKFLDDANQYQYTEVALDYNAGLVGVLAGAIKFFGG 432
>pdb|1KS8|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. Length = 433 Back     alignment and structure
>pdb|2YIK|A Chain A, Catalytic Domain Of Clostridium Thermocellum Celt Length = 611 Back     alignment and structure
>pdb|1JS4|A Chain A, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA Length = 605 Back     alignment and structure
>pdb|2XFG|A Chain A, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules Length = 466 Back     alignment and structure
>pdb|4DOD|A Chain A, The Structure Of Cbescii Cela Gh9 Module Length = 475 Back     alignment and structure
>pdb|1K72|A Chain A, The X-ray Crystal Structure Of Cel9g Complexed With Cellotriose Length = 614 Back     alignment and structure
>pdb|1GA2|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium Cellulolyticum Complexed With Cellobiose Length = 614 Back     alignment and structure
>pdb|3EZ8|A Chain A, Crystal Structure Of Endoglucanase Cel9a From The Thermoacidophilic Alicyclobacillus Acidocaldarius Length = 537 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query124
3gzk_A537 Cellulase; fold from GH9 from CAZY database, glyco 4e-39
1ia6_A441 Cellulase CEL9M; cellullase, alpha barrel, hydrola 3e-38
2yik_A611 Endoglucanase; hydrolase; 2.10A {Clostridium therm 5e-37
1tf4_A 605 T. fusca endo/EXO-cellulase E4 catalytic domain an 9e-37
1ks8_A433 Endo-B-1,4-glucanase; cellulase, endoglucanase, te 1e-35
1g87_A 614 Endocellulase 9G; endoglucanase, cellulose binding 2e-35
2xfg_A466 Endoglucanase 1; hydrolase-sugar binding protein c 2e-35
1clc_A639 Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycos 2e-34
1ut9_A609 Cellulose 1,4-beta-cellobiosidase; hydrolase, glyc 6e-34
3h7l_A586 Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, stru 2e-11
>3gzk_A Cellulase; fold from GH9 from CAZY database, glycosidase, hydrolase; 1.80A {Alicyclobacillus acidocaldarius subsp} PDB: 3ez8_A 3h2w_A* 3h3k_A* 3rx5_A* 3rx7_A* 3rx8_A* Length = 537 Back     alignment and structure
 Score =  136 bits (343), Expect = 4e-39
 Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 5/103 (4%)

Query: 17  VDYILGVNPLKMSYMVGFGPNFSRRIHHRGSSLLSLANHPQSIRCDGGFEPFFHSSNPNI 76
            DY+ G NPL   Y+ GFG    R  HHR S      +HP      GG          + 
Sbjct: 435 ADYLFGANPLGQCYVTGFGQRPVRHPHHRPSVA-DDVDHPVPGMVVGGPNR----HLQDE 489

Query: 77  LVGAIVGGPNQNDGFPDDRSDYSHSEPATYINAAMVGPLAYFA 119
           +  A + G    + + D +  YS +E A Y N+  V  +A   
Sbjct: 490 IARAQLAGRPAMEAYIDHQDSYSTNEVAVYWNSPAVFVIAALL 532


>1ia6_A Cellulase CEL9M; cellullase, alpha barrel, hydrolase; 1.80A {Clostridium cellulolyticum} SCOP: a.102.1.2 PDB: 1ia7_A* Length = 441 Back     alignment and structure
>2yik_A Endoglucanase; hydrolase; 2.10A {Clostridium thermocellum} Length = 611 Back     alignment and structure
>1tf4_A T. fusca endo/EXO-cellulase E4 catalytic domain and cellulose-binding domain; glycosyl hydrolase, cellulose degradation; 1.90A {Thermobifida fusca} SCOP: a.102.1.2 b.2.2.2 PDB: 1js4_A 3tf4_A* 4tf4_A* Length = 605 Back     alignment and structure
>1ks8_A Endo-B-1,4-glucanase; cellulase, endoglucanase, termite, glycosyl hydrolase, family 9, (alpha/alpha)6; 1.40A {Nasutitermes takasagoensis} SCOP: a.102.1.2 PDB: 1ksc_A 1ksd_A Length = 433 Back     alignment and structure
>1g87_A Endocellulase 9G; endoglucanase, cellulose binding domain, (ALPH 6-helix barrel, beta barrel, hydrolase; 1.60A {Clostridium cellulolyticum} SCOP: a.102.1.2 b.2.2.2 PDB: 1ga2_A* 1k72_A* 1kfg_A* Length = 614 Back     alignment and structure
>2xfg_A Endoglucanase 1; hydrolase-sugar binding protein complex, family-9 glycoside hydrolase, hydrolase, sugar binding protein; 1.68A {Clostridium thermocellum} Length = 466 Back     alignment and structure
>1clc_A Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycosyl hydrolase; 1.90A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2 Length = 639 Back     alignment and structure
>1ut9_A Cellulose 1,4-beta-cellobiosidase; hydrolase, glycoside hydrolase, family 9, cellobiohydrolase; 2.1A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2 PDB: 1rq5_A* Length = 609 Back     alignment and structure
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus} Length = 586 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query124
1ia6_A441 Cellulase CEL9M; cellullase, alpha barrel, hydrola 100.0
2yik_A611 Endoglucanase; hydrolase; 2.10A {Clostridium therm 100.0
1tf4_A 605 T. fusca endo/EXO-cellulase E4 catalytic domain an 100.0
2xfg_A466 Endoglucanase 1; hydrolase-sugar binding protein c 100.0
1ks8_A433 Endo-B-1,4-glucanase; cellulase, endoglucanase, te 100.0
3gzk_A537 Cellulase; fold from GH9 from CAZY database, glyco 100.0
1g87_A 614 Endocellulase 9G; endoglucanase, cellulose binding 100.0
1ut9_A609 Cellulose 1,4-beta-cellobiosidase; hydrolase, glyc 100.0
1clc_A639 Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycos 100.0
3h7l_A586 Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, stru 99.55
>1ia6_A Cellulase CEL9M; cellullase, alpha barrel, hydrolase; 1.80A {Clostridium cellulolyticum} SCOP: a.102.1.2 PDB: 1ia7_A* Back     alignment and structure
Probab=100.00  E-value=1e-40  Score=280.18  Aligned_cols=108  Identities=38%  Similarity=0.531  Sum_probs=94.7

Q ss_pred             ChhHHHHHHHhcchhhcCCCCCCCceEEeeCCCCCCCcccCCCCccccCCCCCcccCCCCCccccCCCCCCCcceeeecC
Q 043973            5 IPRGKIRNKMYKVDYILGVNPLKMSYMVGFGPNFSRRIHHRGSSLLSLANHPQSIRCDGGFEPFFHSSNPNILVGAIVGG   84 (124)
Q Consensus         5 ~~~~y~~~a~~QidYiLG~Np~g~SyvvG~G~~~P~~pHHR~ss~p~~~~~p~~~~c~~g~~~~~~~~~p~~l~GalVGG   84 (124)
                      .+++|++||++|||||||+||+++|||||||+|+|++||||+|+|+...          ++  -...++|++|+||||||
T Consensus       325 ~~~~y~~~A~~qldYiLG~NP~~~SyvvG~G~~~p~~pHHR~s~~~~~~----------~~--~~p~p~~~~l~GalvGG  392 (441)
T 1ia6_A          325 PDQSLLDLAKKQVDYILGDNPANMSYIIGYGSNWCIHPHHRAANGYTYA----------NG--DNAKPAKHLLTGALVGG  392 (441)
T ss_dssp             CCHHHHHHHHHHHHHHHTCSTTCCCSBTTSSSSCCSCCBCHHHHCCCCC--------------CTTSCCSSCCTTCBCCC
T ss_pred             CHHHHHHHHHHHHHHhcCCCCCCceeEEecCCCCCCCCcChhhccCCcc----------cc--CCCCCCcccCccceeeC
Confidence            3579999999999999999999999999999999999999999986421          01  12233488999999999


Q ss_pred             CCCCCCccccCCCcccccccccchhhHHHHHHHhhcCCCC
Q 043973           85 PNQNDGFPDDRSDYSHSEPATYINAAMVGPLAYFAGGKSG  124 (124)
Q Consensus        85 P~~~d~y~D~r~~y~~nEvaid~NA~lv~~lA~l~~~~~~  124 (124)
                      ||..|+|.|+|.+|++|||||||||+||++||+|...++|
T Consensus       393 P~~~d~y~D~~~~y~~nEvai~~NA~~v~~la~l~~~~~~  432 (441)
T 1ia6_A          393 PDQNDKFLDDANQYQYTEVALDYNAGLVGVLAGAIKFFGG  432 (441)
T ss_dssp             CCTTSCCCCSTTCHHHHBCCHHHHHHHHHHHHHHHHHTC-
T ss_pred             CCCCcCcCcccccccccccchhhhHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999999999887654



>2yik_A Endoglucanase; hydrolase; 2.10A {Clostridium thermocellum} Back     alignment and structure
>1tf4_A T. fusca endo/EXO-cellulase E4 catalytic domain and cellulose-binding domain; glycosyl hydrolase, cellulose degradation; 1.90A {Thermobifida fusca} SCOP: a.102.1.2 b.2.2.2 PDB: 1js4_A 3tf4_A* 4tf4_A* Back     alignment and structure
>2xfg_A Endoglucanase 1; hydrolase-sugar binding protein complex, family-9 glycoside hydrolase, hydrolase, sugar binding protein; 1.68A {Clostridium thermocellum} Back     alignment and structure
>1ks8_A Endo-B-1,4-glucanase; cellulase, endoglucanase, termite, glycosyl hydrolase, family 9, (alpha/alpha)6; 1.40A {Nasutitermes takasagoensis} SCOP: a.102.1.2 PDB: 1ksc_A 1ksd_A Back     alignment and structure
>3gzk_A Cellulase; fold from GH9 from CAZY database, glycosidase, hydrolase; 1.80A {Alicyclobacillus acidocaldarius subsp} PDB: 3ez8_A 3h2w_A* 3h3k_A* 3rx5_A* 3rx7_A* 3rx8_A* Back     alignment and structure
>1g87_A Endocellulase 9G; endoglucanase, cellulose binding domain, (ALPH 6-helix barrel, beta barrel, hydrolase; 1.60A {Clostridium cellulolyticum} SCOP: a.102.1.2 b.2.2.2 PDB: 1ga2_A* 1k72_A* 1kfg_A* Back     alignment and structure
>1ut9_A Cellulose 1,4-beta-cellobiosidase; hydrolase, glycoside hydrolase, family 9, cellobiohydrolase; 2.1A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2 PDB: 1rq5_A* Back     alignment and structure
>1clc_A Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycosyl hydrolase; 1.90A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2 Back     alignment and structure
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 124
d1ia6a_431 a.102.1.2 (A:) Nonprocessive cellulase Cel9M {Clos 2e-35
d1tf4a1460 a.102.1.2 (A:1-460) Endo/exocellulase:cellobiose E 2e-35
d1g87a1454 a.102.1.2 (A:3-456) Endo/exocellulase:cellobiose E 4e-33
d1ut9a1511 a.102.1.2 (A:306-816) Cellulose 1,4-beta-cellobios 4e-31
d1ks8a_433 a.102.1.2 (A:) Endo-b-1,4-glucanase {Termite (Nasu 3e-30
d1clca1441 a.102.1.2 (A:135-575) CelD cellulase, C-terminal d 2e-27
>d1ia6a_ a.102.1.2 (A:) Nonprocessive cellulase Cel9M {Clostridium cellulolyticum [TaxId: 1521]} Length = 431 Back     information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Cellulases catalytic domain
domain: Nonprocessive cellulase Cel9M
species: Clostridium cellulolyticum [TaxId: 1521]
 Score =  123 bits (311), Expect = 2e-35
 Identities = 41/102 (40%), Positives = 57/102 (55%), Gaps = 12/102 (11%)

Query: 17  VDYILGVNPLKMSYMVGFGPNFSRRIHHRGSSLLSLANHPQSIRCDGGFEPFFHSSNPNI 76
           VDYILG NP  MSY++G+G N+    HHR ++  + AN   +                ++
Sbjct: 337 VDYILGDNPANMSYIIGYGSNWCIHPHHRAANGYTYANGDNA------------KPAKHL 384

Query: 77  LVGAIVGGPNQNDGFPDDRSDYSHSEPATYINAAMVGPLAYF 118
           L GA+VGGP+QND F DD + Y ++E A   NA +VG LA  
Sbjct: 385 LTGALVGGPDQNDKFLDDANQYQYTEVALDYNAGLVGVLAGA 426


>d1tf4a1 a.102.1.2 (A:1-460) Endo/exocellulase:cellobiose E-4, N-terminal domain {Thermomonospora fusca [TaxId: 2021]} Length = 460 Back     information, alignment and structure
>d1g87a1 a.102.1.2 (A:3-456) Endo/exocellulase:cellobiose E-4, N-terminal domain {Clostridium cellulolyticum, atcc 35319 [TaxId: 1521]} Length = 454 Back     information, alignment and structure
>d1ut9a1 a.102.1.2 (A:306-816) Cellulose 1,4-beta-cellobiosidase CbhA {Clostridium thermocellum [TaxId: 1515]} Length = 511 Back     information, alignment and structure
>d1ks8a_ a.102.1.2 (A:) Endo-b-1,4-glucanase {Termite (Nasutitermes takasagoensis) [TaxId: 62960]} Length = 433 Back     information, alignment and structure
>d1clca1 a.102.1.2 (A:135-575) CelD cellulase, C-terminal domain {Clostridium thermocellum [TaxId: 1515]} Length = 441 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query124
d1tf4a1460 Endo/exocellulase:cellobiose E-4, N-terminal domai 100.0
d1ia6a_431 Nonprocessive cellulase Cel9M {Clostridium cellulo 100.0
d1g87a1454 Endo/exocellulase:cellobiose E-4, N-terminal domai 100.0
d1clca1441 CelD cellulase, C-terminal domain {Clostridium the 100.0
d1ks8a_433 Endo-b-1,4-glucanase {Termite (Nasutitermes takasa 100.0
d1ut9a1511 Cellulose 1,4-beta-cellobiosidase CbhA {Clostridiu 100.0
>d1tf4a1 a.102.1.2 (A:1-460) Endo/exocellulase:cellobiose E-4, N-terminal domain {Thermomonospora fusca [TaxId: 2021]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Cellulases catalytic domain
domain: Endo/exocellulase:cellobiose E-4, N-terminal domain
species: Thermomonospora fusca [TaxId: 2021]
Probab=100.00  E-value=4.4e-39  Score=267.94  Aligned_cols=107  Identities=36%  Similarity=0.529  Sum_probs=93.3

Q ss_pred             hhHHHHHHHhcchhhcCCCCCCCceEEeeCCCCCCCcccCCCCccccCCCCCcccCCCCCccccCCCCCCCcceeeecCC
Q 043973            6 PRGKIRNKMYKVDYILGVNPLKMSYMVGFGPNFSRRIHHRGSSLLSLANHPQSIRCDGGFEPFFHSSNPNILVGAIVGGP   85 (124)
Q Consensus         6 ~~~y~~~a~~QidYiLG~Np~g~SyvvG~G~~~P~~pHHR~ss~p~~~~~p~~~~c~~g~~~~~~~~~p~~l~GalVGGP   85 (124)
                      +++|+++|++|||||||+||+++|||||||.|+|++||||.++|+...          +.  -...++|++|+|+|||||
T Consensus       339 ~~~y~~~A~~qldylLG~Np~~~SyVtG~G~~~p~~pHHR~s~~~~~~----------~~--~~~~p~~~~l~G~lvGGP  406 (460)
T d1tf4a1         339 KQRYHDFAVRQINYALGDNPRNSSYVVGFGNNPPRNPHHRTAHGSWTD----------SI--ASPAENRHVLYGALVGGP  406 (460)
T ss_dssp             HHHHHHHHHHHHHHHHTCSTTCCCSBTTSSSSCCSCCSCHHHHTCSSS----------CT--TSSSSCSSCCTTCBCCCC
T ss_pred             HHHHHHHHHHhhheecccCCCCcCCCccCCCCCCCCCcCccccCCCcc----------cc--CCCCCCCCCcceeEecCC
Confidence            478999999999999999999999999999999999999998865421          11  112345789999999999


Q ss_pred             C-CCCCccccCCCcccccccccchhhHHHHHHHhhcCCCC
Q 043973           86 N-QNDGFPDDRSDYSHSEPATYINAAMVGPLAYFAGGKSG  124 (124)
Q Consensus        86 ~-~~d~y~D~r~~y~~nEvaid~NA~lv~~lA~l~~~~~~  124 (124)
                      | .+++|+|+|.+|++|||||||||+||++||+|++.++|
T Consensus       407 n~~~~~y~D~~~~y~~nEvai~~NA~lv~~la~l~~~~~~  446 (460)
T d1tf4a1         407 GSPNDAYTDDRQDYVANEVATDYNAGFSSALAMLVEEYGG  446 (460)
T ss_dssp             SSTTCCCCCCTTCTTTTCCCGGGGHHHHHHHHHHHHHHCC
T ss_pred             CCCCCCcCcCcchhhhhhhHHHHHHHHHHHHHHHHHhcCC
Confidence            8 58999999999999999999999999999999877654



>d1ia6a_ a.102.1.2 (A:) Nonprocessive cellulase Cel9M {Clostridium cellulolyticum [TaxId: 1521]} Back     information, alignment and structure
>d1g87a1 a.102.1.2 (A:3-456) Endo/exocellulase:cellobiose E-4, N-terminal domain {Clostridium cellulolyticum, atcc 35319 [TaxId: 1521]} Back     information, alignment and structure
>d1clca1 a.102.1.2 (A:135-575) CelD cellulase, C-terminal domain {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1ks8a_ a.102.1.2 (A:) Endo-b-1,4-glucanase {Termite (Nasutitermes takasagoensis) [TaxId: 62960]} Back     information, alignment and structure
>d1ut9a1 a.102.1.2 (A:306-816) Cellulose 1,4-beta-cellobiosidase CbhA {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure