Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
ID Alignment Graph Length
Definition
E-value
Query 124
PLN02175 484
PLN02175, PLN02175, endoglucanase
6e-52
PLN02266 510
PLN02266, PLN02266, endoglucanase
1e-51
PLN02613 498
PLN02613, PLN02613, endoglucanase
1e-47
pfam00759 437
pfam00759, Glyco_hydro_9, Glycosyl hydrolase famil
1e-44
PLN02308 492
PLN02308, PLN02308, endoglucanase
4e-43
PLN03009 495
PLN03009, PLN03009, cellulase
8e-40
PLN00119 489
PLN00119, PLN00119, endoglucanase
2e-38
PLN02171
629
PLN02171, PLN02171, endoglucanase
4e-37
PLN02340
614
PLN02340, PLN02340, endoglucanase
9e-35
PLN02420 525
PLN02420, PLN02420, endoglucanase
7e-31
PLN02345 469
PLN02345, PLN02345, endoglucanase
5e-30
PLN02909 486
PLN02909, PLN02909, Endoglucanase
2e-28
>gnl|CDD|177832 PLN02175, PLN02175, endoglucanase
Back Hide alignment and domain information
Score = 169 bits (430), Expect = 6e-52
Identities = 79/121 (65%), Positives = 92/121 (76%), Gaps = 1/121 (0%)
Query: 4 VIPRGKIRNKMYKVDYILGVNPLKMSYMVGFGPNFSRRIHHRGSSLLSLANHPQSIRCDG 63
++P I +VDYILG NP+KMSYMVGF NF +RIHHR SSL S A S+ C+G
Sbjct: 363 IVPNALISLSKRQVDYILGDNPIKMSYMVGFSSNFPKRIHHRASSLPSHALRSNSLGCNG 422
Query: 64 GFEPFF-HSSNPNILVGAIVGGPNQNDGFPDDRSDYSHSEPATYINAAMVGPLAYFAGGK 122
GF+ F+ + NPNIL GAIVGGPNQNDG+PD R DYSH+EPATYINAA VGPLAYFA G+
Sbjct: 423 GFQSFYTQNPNPNILTGAIVGGPNQNDGYPDQRDDYSHAEPATYINAAFVGPLAYFAAGR 482
Query: 123 S 123
S
Sbjct: 483 S 483
>gnl|CDD|215150 PLN02266, PLN02266, endoglucanase
Back Show alignment and domain information
Score = 169 bits (430), Expect = 1e-51
Identities = 71/105 (67%), Positives = 83/105 (79%), Gaps = 1/105 (0%)
Query: 16 KVDYILGVNPLKMSYMVGFGPNFSRRIHHRGSSLLSLANHPQSIRCDGGFEPFF-HSSNP 74
+VDY+LG NPLKMSYMVG+GP + RRIHHRGSSL S+A HP I+C GF S NP
Sbjct: 400 QVDYLLGDNPLKMSYMVGYGPRYPRRIHHRGSSLPSVAAHPAKIQCSQGFSIMNSQSPNP 459
Query: 75 NILVGAIVGGPNQNDGFPDDRSDYSHSEPATYINAAMVGPLAYFA 119
N+LVGA+VGGP+Q+D FPD+RSDY SEPATYINA +VG LAY A
Sbjct: 460 NVLVGAVVGGPDQHDRFPDERSDYEQSEPATYINAPLVGALAYLA 504
>gnl|CDD|215331 PLN02613, PLN02613, endoglucanase
Back Show alignment and domain information
Score = 159 bits (403), Expect = 1e-47
Identities = 63/110 (57%), Positives = 80/110 (72%), Gaps = 2/110 (1%)
Query: 16 KVDYILGVNPLKMSYMVGFGPNFSRRIHHRGSSLLSLANHPQSIRCDGGFEPFFHSS--N 73
+VDYILG NP+KMSYMVGFG + +IHHRGSS+ S+ P+ + C+GGF +++S N
Sbjct: 374 QVDYILGNNPMKMSYMVGFGTKYPTQIHHRGSSIPSIQVLPEKVDCNGGFSSYYNSDTPN 433
Query: 74 PNILVGAIVGGPNQNDGFPDDRSDYSHSEPATYINAAMVGPLAYFAGGKS 123
PN+ VGAIVGGP+ ND + D RSDYSH+EP TYINAA VG +A S
Sbjct: 434 PNVHVGAIVGGPDSNDQYSDKRSDYSHAEPTTYINAAFVGSVAALIKQVS 483
>gnl|CDD|216104 pfam00759, Glyco_hydro_9, Glycosyl hydrolase family 9
Back Show alignment and domain information
Score = 150 bits (380), Expect = 1e-44
Identities = 58/119 (48%), Positives = 72/119 (60%), Gaps = 17/119 (14%)
Query: 1 MWNVIPRGKIRNKMYK-VDYILGVNPLKMSYMVGFGPNFSRRIHHRGSSLLSLANHPQSI 59
+ + K R+ K +DYILG NPLKMSY+VG+G N +R HHRG+S
Sbjct: 333 LSDFTGASKYRDFAKKQIDYILGDNPLKMSYVVGYGENPPQRPHHRGAS----------- 381
Query: 60 RCDGGFEPFFHS--SNPNILVGAIVGGPNQNDGFPDDRSDYSHSEPATYINAAMVGPLA 116
GG+ S NPN+LVGA+VGGPN ND + DDRSDYS +E AT NA +VG LA
Sbjct: 382 ---GGWSDSIPSPPPNPNVLVGALVGGPNSNDCYTDDRSDYSTNEVATNWNAPLVGALA 437
>gnl|CDD|177943 PLN02308, PLN02308, endoglucanase
Back Show alignment and domain information
Score = 146 bits (371), Expect = 4e-43
Identities = 65/105 (61%), Positives = 76/105 (72%), Gaps = 1/105 (0%)
Query: 16 KVDYILGVNPLKMSYMVGFGPNFSRRIHHRGSSLLSLANHPQSIRCDGGFEPFFHSS-NP 74
+VDYILG NPL+MSYMVG+G F +RIHHRGSSL S+A HP I C G F + NP
Sbjct: 382 QVDYILGDNPLRMSYMVGYGSRFPQRIHHRGSSLPSVAAHPARIGCKEGSRYFLSPNPNP 441
Query: 75 NILVGAIVGGPNQNDGFPDDRSDYSHSEPATYINAAMVGPLAYFA 119
N+LVGA+VGGPN D FPD R + SEP TYINA +VG LAYF+
Sbjct: 442 NLLVGAVVGGPNVTDAFPDSRPYFQQSEPTTYINAPLVGLLAYFS 486
>gnl|CDD|166650 PLN03009, PLN03009, cellulase
Back Show alignment and domain information
Score = 138 bits (348), Expect = 8e-40
Identities = 63/123 (51%), Positives = 83/123 (67%), Gaps = 3/123 (2%)
Query: 3 NVIPRGKIRNKMYKVDYILGVNPLKMSYMVGFGPNFSRRIHHRGSSLLSLANHPQSIRCD 62
+ P + +VDYILG NP+ +SYMVG+ + +RIHHRGSSL S+ +HP++I C
Sbjct: 372 TIGPDSLRQQAKRQVDYILGDNPMGLSYMVGYSERYPQRIHHRGSSLPSIKDHPEAIACK 431
Query: 63 GGFEPFFHSS--NPNILVGAIVGGPNQNDGFPDDRSDYSHSEPATYINAAMVGPLAYFAG 120
G +F+SS NPN+LVGA+VGGP ++D + DDR D+ SEP TYINA VG LAYFA
Sbjct: 432 EG-SVYFNSSNPNPNVLVGAVVGGPGEDDSYEDDRDDFRKSEPTTYINAPFVGVLAYFAA 490
Query: 121 GKS 123
Sbjct: 491 NPG 493
>gnl|CDD|177732 PLN00119, PLN00119, endoglucanase
Back Show alignment and domain information
Score = 134 bits (338), Expect = 2e-38
Identities = 52/106 (49%), Positives = 75/106 (70%), Gaps = 2/106 (1%)
Query: 16 KVDYILGVNPLKMSYMVGFGPNFSRRIHHRGSSLLSLANHPQSIRCDGGFEPFFH--SSN 73
+VDYILG NP MSYMVG+G N+ ++ HHRG+S++S+ + C GGF+ +++ + N
Sbjct: 384 QVDYILGSNPKNMSYMVGYGTNYPKKPHHRGASIVSIKKDKTPVTCSGGFDAWYNNPAPN 443
Query: 74 PNILVGAIVGGPNQNDGFPDDRSDYSHSEPATYINAAMVGPLAYFA 119
PN+L+GAIVGGP+ ND + D+RS++ +EPAT A VG LA A
Sbjct: 444 PNVLMGAIVGGPDDNDVYGDERSNFQQAEPATVTVAPFVGVLAAVA 489
>gnl|CDD|215115 PLN02171, PLN02171, endoglucanase
Back Show alignment and domain information
Score = 132 bits (333), Expect = 4e-37
Identities = 58/111 (52%), Positives = 77/111 (69%), Gaps = 2/111 (1%)
Query: 16 KVDYILGVNPLKMSYMVGFGPNFSRRIHHRGSSLLSLANHPQSIRCDGGFEPFFH--SSN 73
+VDYILG NP SYMVG+G N+ R++HHRGSS++S+ P + C GG+ +F S+
Sbjct: 389 QVDYILGDNPRATSYMVGYGANYPRQVHHRGSSIVSIKVDPSFVSCRGGYATWFSRKGSD 448
Query: 74 PNILVGAIVGGPNQNDGFPDDRSDYSHSEPATYINAAMVGPLAYFAGGKSG 124
PN+L GAIVGGP+ D F D+R +Y +EPATY NA ++G LA AGG G
Sbjct: 449 PNLLTGAIVGGPDAYDNFADERDNYEQTEPATYNNAPLLGVLARLAGGHGG 499
>gnl|CDD|215194 PLN02340, PLN02340, endoglucanase
Back Show alignment and domain information
Score = 125 bits (315), Expect = 9e-35
Identities = 50/115 (43%), Positives = 71/115 (61%), Gaps = 2/115 (1%)
Query: 4 VIPRGKIRNKMYKVDYILGVNPLKMSYMVGFGPNFSRRIHHRGSSLLSLANHPQSIRCDG 63
V P+ + + DYILG NP MSYMVG+GP + +HHRGSS+ S+ ++ C
Sbjct: 377 VQPQELLDFARSQADYILGKNPKGMSYMVGYGPKYPIHVHHRGSSIPSIFALHSTVGCVQ 436
Query: 64 GFEPFFHSS--NPNILVGAIVGGPNQNDGFPDDRSDYSHSEPATYINAAMVGPLA 116
GF+ ++ +PN++ GA+VGGP+ ND F DDRS+Y +EP NA +VG A
Sbjct: 437 GFDSWYRRKEADPNVIYGALVGGPDANDNFSDDRSNYEQTEPTLSGNAPLVGLFA 491
>gnl|CDD|178040 PLN02420, PLN02420, endoglucanase
Back Show alignment and domain information
Score = 114 bits (286), Expect = 7e-31
Identities = 47/105 (44%), Positives = 68/105 (64%), Gaps = 2/105 (1%)
Query: 16 KVDYILGVNPLKMSYMVGFGPNFSRRIHHRGSSLLSLANHPQSIRCDGGFEPFFHSS--N 73
++DYILG NP++ SY+VG+GP + R+HHRG+S+ S H I C G++ ++ S N
Sbjct: 402 QIDYILGSNPMETSYLVGYGPKYPTRVHHRGASIASFKEHKGFIGCTQGYDNWYGRSEPN 461
Query: 74 PNILVGAIVGGPNQNDGFPDDRSDYSHSEPATYINAAMVGPLAYF 118
P++LVGA+VGGP+ D F D R +Y +E TY A +VG A
Sbjct: 462 PSVLVGALVGGPDCQDNFDDRRGNYVQTEACTYNTAPLVGVFARL 506
>gnl|CDD|177979 PLN02345, PLN02345, endoglucanase
Back Show alignment and domain information
Score = 111 bits (279), Expect = 5e-30
Identities = 49/103 (47%), Positives = 68/103 (66%), Gaps = 7/103 (6%)
Query: 16 KVDYILGVNPLKMSYMVGFGPNFSRRIHHRGSSLLSLANHPQSIRCDGGFEPFFHSS--N 73
+ DYILG NP+KMSY+VG+G + + +HHRG+S+ + A C GF+ + HSS N
Sbjct: 359 QADYILGKNPMKMSYLVGYGDKYPQYVHHRGASIPADAK----TGCKDGFK-WLHSSEPN 413
Query: 74 PNILVGAIVGGPNQNDGFPDDRSDYSHSEPATYINAAMVGPLA 116
PN+ GA+VGGP QND F D R + +EP TY +A +VG L+
Sbjct: 414 PNVATGALVGGPFQNDTFVDSRDNSMQNEPTTYNSALLVGLLS 456
>gnl|CDD|178497 PLN02909, PLN02909, Endoglucanase
Back Show alignment and domain information
Score = 107 bits (268), Expect = 2e-28
Identities = 54/107 (50%), Positives = 70/107 (65%), Gaps = 5/107 (4%)
Query: 16 KVDYILGVNPLKMSYMVGFGPNFSRRIHHRGSSLLSL-ANHPQSIRCDGGFEPFFHSS-- 72
++DY+LG NP SYMVGFGPN ++ HHRG+S+ L AN P + C F +F+
Sbjct: 380 QIDYLLGANPQGRSYMVGFGPNPPKQPHHRGASVPVLPANTP--VNCGLSFVEWFNKDRP 437
Query: 73 NPNILVGAIVGGPNQNDGFPDDRSDYSHSEPATYINAAMVGPLAYFA 119
NPN L GAIVGGP++ D F D R + S++EP TYIN+ VG LA A
Sbjct: 438 NPNELTGAIVGGPDRQDNFVDKRWNSSYTEPCTYINSLAVGVLAKLA 484
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value
Query
124
d1ia6a_ 431
a.102.1.2 (A:) Nonprocessive cellulase Cel9M {Clos
2e-35
d1tf4a1 460
a.102.1.2 (A:1-460) Endo/exocellulase:cellobiose E
2e-35
d1g87a1 454
a.102.1.2 (A:3-456) Endo/exocellulase:cellobiose E
4e-33
d1ut9a1 511
a.102.1.2 (A:306-816) Cellulose 1,4-beta-cellobios
4e-31
d1ks8a_ 433
a.102.1.2 (A:) Endo-b-1,4-glucanase {Termite (Nasu
3e-30
d1clca1 441
a.102.1.2 (A:135-575) CelD cellulase, C-terminal d
2e-27
>d1ia6a_ a.102.1.2 (A:) Nonprocessive cellulase Cel9M {Clostridium cellulolyticum [TaxId: 1521]} Length = 431
Back Hide information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Cellulases catalytic domain
domain: Nonprocessive cellulase Cel9M
species: Clostridium cellulolyticum [TaxId: 1521]
Score = 123 bits (311), Expect = 2e-35
Identities = 41/102 (40%), Positives = 57/102 (55%), Gaps = 12/102 (11%)
Query: 17 VDYILGVNPLKMSYMVGFGPNFSRRIHHRGSSLLSLANHPQSIRCDGGFEPFFHSSNPNI 76
VDYILG NP MSY++G+G N+ HHR ++ + AN + ++
Sbjct: 337 VDYILGDNPANMSYIIGYGSNWCIHPHHRAANGYTYANGDNA------------KPAKHL 384
Query: 77 LVGAIVGGPNQNDGFPDDRSDYSHSEPATYINAAMVGPLAYF 118
L GA+VGGP+QND F DD + Y ++E A NA +VG LA
Sbjct: 385 LTGALVGGPDQNDKFLDDANQYQYTEVALDYNAGLVGVLAGA 426
>d1tf4a1 a.102.1.2 (A:1-460) Endo/exocellulase:cellobiose E-4, N-terminal domain {Thermomonospora fusca [TaxId: 2021]} Length = 460
Back Show information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Cellulases catalytic domain
domain: Endo/exocellulase:cellobiose E-4, N-terminal domain
species: Thermomonospora fusca [TaxId: 2021]
Score = 124 bits (312), Expect = 2e-35
Identities = 41/111 (36%), Positives = 51/111 (45%), Gaps = 17/111 (15%)
Query: 17 VDYILGVNPLKMSYMVGFGPNFSRRIHHRGSSLLSLANHPQSIRCDGGFEPFFHS--SNP 74
++Y LG NP SY+VGFG N R HHR + G + S N
Sbjct: 350 INYALGDNPRNSSYVVGFGNNPPRNPHHRTAH--------------GSWTDSIASPAENR 395
Query: 75 NILVGAIVGGPNQ-NDGFPDDRSDYSHSEPATYINAAMVGPLAYFAGGKSG 124
++L GA+VGGP ND + DDR DY +E AT NA LA G
Sbjct: 396 HVLYGALVGGPGSPNDAYTDDRQDYVANEVATDYNAGFSSALAMLVEEYGG 446
>d1g87a1 a.102.1.2 (A:3-456) Endo/exocellulase:cellobiose E-4, N-terminal domain {Clostridium cellulolyticum, atcc 35319 [TaxId: 1521]} Length = 454
Back Show information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Cellulases catalytic domain
domain: Endo/exocellulase:cellobiose E-4, N-terminal domain
species: Clostridium cellulolyticum, atcc 35319 [TaxId: 1521]
Score = 117 bits (295), Expect = 4e-33
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 14/108 (12%)
Query: 17 VDYILGVNPLKMSYMVGFGPNFSRRIHHRGSSLLSLANHPQSIRCDGGFEPFFHSSNPNI 76
+DY LG S++VG+G N + HHR + + + + +
Sbjct: 347 IDYALGSTG--RSFVVGYGVNPPQHPHHRTAH------------GSWTDQMTSPTYHRHT 392
Query: 77 LVGAIVGGPNQNDGFPDDRSDYSHSEPATYINAAMVGPLAYFAGGKSG 124
+ GA+VGGP+ DG+ D+ ++Y ++E A NA G LA G
Sbjct: 393 IYGALVGGPDNADGYTDEINNYVNNEIACDYNAGFTGALAKMYKHSGG 440
>d1ut9a1 a.102.1.2 (A:306-816) Cellulose 1,4-beta-cellobiosidase CbhA {Clostridium thermocellum [TaxId: 1515]} Length = 511
Back Show information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Cellulases catalytic domain
domain: Cellulose 1,4-beta-cellobiosidase CbhA
species: Clostridium thermocellum [TaxId: 1515]
Score = 112 bits (282), Expect = 4e-31
Identities = 22/104 (21%), Positives = 34/104 (32%), Gaps = 5/104 (4%)
Query: 17 VDYILGVNPLKMSYMVGFGPNFSRRIHHRGSSLLSLANHPQSIRC--DGGFEPFFHSSNP 74
+ Y+LG N + SY+ G+G + H R + + P GG
Sbjct: 406 ISYLLGRNAMDQSYVTGYGERPLQNPHDRFWTPQTSKRFPAPPPGIISGGPNS---RFED 462
Query: 75 NILVGAIVGGPNQNDGFPDDRSDYSHSEPATYINAAMVGPLAYF 118
+ A+ F D +S +E NA AY
Sbjct: 463 PTINAAVKKDTPPQKCFIDHTDSWSTNEITVNWNAPFAWVTAYL 506
>d1ks8a_ a.102.1.2 (A:) Endo-b-1,4-glucanase {Termite (Nasutitermes takasagoensis) [TaxId: 62960]} Length = 433
Back Show information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Cellulases catalytic domain
domain: Endo-b-1,4-glucanase
species: Termite (Nasutitermes takasagoensis) [TaxId: 62960]
Score = 109 bits (274), Expect = 3e-30
Identities = 46/105 (43%), Positives = 56/105 (53%), Gaps = 12/105 (11%)
Query: 17 VDYILGVNPLKMSYMVGFGPNFSRRIHHRGSSLLSLANHPQSIRCDGGFEPFFHSSNPN- 75
+DY LG S++ GFG N R HHR SS P CD F+S +PN
Sbjct: 335 IDYALGDGG--RSFVCGFGSNPPTRPHHRSSSC-----PPAPATCDWNT---FNSPDPNY 384
Query: 76 -ILVGAIVGGPNQNDGFPDDRSDYSHSEPATYINAAMVGPLAYFA 119
+L GA+VGGP+QND + DDRSDY H+E AT NA LA
Sbjct: 385 HVLSGALVGGPDQNDNYVDDRSDYVHNEVATDYNAGFQSALAALV 429
>d1clca1 a.102.1.2 (A:135-575) CelD cellulase, C-terminal domain {Clostridium thermocellum [TaxId: 1515]} Length = 441
Back Show information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Cellulases catalytic domain
domain: CelD cellulase, C-terminal domain
species: Clostridium thermocellum [TaxId: 1515]
Score = 102 bits (254), Expect = 2e-27
Identities = 30/102 (29%), Positives = 40/102 (39%), Gaps = 20/102 (19%)
Query: 17 VDYILGVNPLKMSYMVGFGPNFSRRIHHRGSSLLSLANHPQSIRCDGGFEPFFHSSNPNI 76
+ ++ G N SY+ G G N H R S DG +EP P
Sbjct: 356 ISHVFGRNYYNRSYVTGLGINPPMNPHDRRSG------------ADGIWEP-----WPGY 398
Query: 77 LVGAIVGGPNQNDGFPDDRSDYSHSEPATYINAAMVGPLAYF 118
LVG GP + D + Y +E A NAA++ LA F
Sbjct: 399 LVGGGWPGPKD---WVDIQDSYQTNEIAINWNAALIYALAGF 437
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability
Query 124
d1tf4a1 460
Endo/exocellulase:cellobiose E-4, N-terminal domai
100.0
d1ia6a_ 431
Nonprocessive cellulase Cel9M {Clostridium cellulo
100.0
d1g87a1 454
Endo/exocellulase:cellobiose E-4, N-terminal domai
100.0
d1clca1 441
CelD cellulase, C-terminal domain {Clostridium the
100.0
d1ks8a_ 433
Endo-b-1,4-glucanase {Termite (Nasutitermes takasa
100.0
d1ut9a1 511
Cellulose 1,4-beta-cellobiosidase CbhA {Clostridiu
100.0
>d1tf4a1 a.102.1.2 (A:1-460) Endo/exocellulase:cellobiose E-4, N-terminal domain {Thermomonospora fusca [TaxId: 2021]}
Back Hide information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Cellulases catalytic domain
domain: Endo/exocellulase:cellobiose E-4, N-terminal domain
species: Thermomonospora fusca [TaxId: 2021]
Probab=100.00 E-value=4.4e-39 Score=267.94 Aligned_cols=107 Identities=36% Similarity=0.529 Sum_probs=93.3
Q ss_pred hhHHHHHHHhcchhhcCCCCCCCceEEeeCCCCCCCcccCCCCccccCCCCCcccCCCCCccccCCCCCCCcceeeecCC
Q 043973 6 PRGKIRNKMYKVDYILGVNPLKMSYMVGFGPNFSRRIHHRGSSLLSLANHPQSIRCDGGFEPFFHSSNPNILVGAIVGGP 85 (124)
Q Consensus 6 ~~~y~~~a~~QidYiLG~Np~g~SyvvG~G~~~P~~pHHR~ss~p~~~~~p~~~~c~~g~~~~~~~~~p~~l~GalVGGP 85 (124)
+++|+++|++|||||||+||+++|||||||.|+|++||||.++|+... +. -...++|++|+|+|||||
T Consensus 339 ~~~y~~~A~~qldylLG~Np~~~SyVtG~G~~~p~~pHHR~s~~~~~~----------~~--~~~~p~~~~l~G~lvGGP 406 (460)
T d1tf4a1 339 KQRYHDFAVRQINYALGDNPRNSSYVVGFGNNPPRNPHHRTAHGSWTD----------SI--ASPAENRHVLYGALVGGP 406 (460)
T ss_dssp HHHHHHHHHHHHHHHHTCSTTCCCSBTTSSSSCCSCCSCHHHHTCSSS----------CT--TSSSSCSSCCTTCBCCCC
T ss_pred HHHHHHHHHHhhheecccCCCCcCCCccCCCCCCCCCcCccccCCCcc----------cc--CCCCCCCCCcceeEecCC
Confidence 478999999999999999999999999999999999999998865421 11 112345789999999999
Q ss_pred C-CCCCccccCCCcccccccccchhhHHHHHHHhhcCCCC
Q 043973 86 N-QNDGFPDDRSDYSHSEPATYINAAMVGPLAYFAGGKSG 124 (124)
Q Consensus 86 ~-~~d~y~D~r~~y~~nEvaid~NA~lv~~lA~l~~~~~~ 124 (124)
| .+++|+|+|.+|++|||||||||+||++||+|++.++|
T Consensus 407 n~~~~~y~D~~~~y~~nEvai~~NA~lv~~la~l~~~~~~ 446 (460)
T d1tf4a1 407 GSPNDAYTDDRQDYVANEVATDYNAGFSSALAMLVEEYGG 446 (460)
T ss_dssp SSTTCCCCCCTTCTTTTCCCGGGGHHHHHHHHHHHHHHCC
T ss_pred CCCCCCcCcCcchhhhhhhHHHHHHHHHHHHHHHHHhcCC
Confidence 8 58999999999999999999999999999999877654
>d1ia6a_ a.102.1.2 (A:) Nonprocessive cellulase Cel9M {Clostridium cellulolyticum [TaxId: 1521]}
Back Show information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Cellulases catalytic domain
domain: Nonprocessive cellulase Cel9M
species: Clostridium cellulolyticum [TaxId: 1521]
Probab=100.00 E-value=1.2e-38 Score=262.90 Aligned_cols=108 Identities=38% Similarity=0.537 Sum_probs=93.8
Q ss_pred cChhHHHHHHHhcchhhcCCCCCCCceEEeeCCCCCCCcccCCCCccccCCCCCcccCCCCCccccCCCCCCCcceeeec
Q 043973 4 VIPRGKIRNKMYKVDYILGVNPLKMSYMVGFGPNFSRRIHHRGSSLLSLANHPQSIRCDGGFEPFFHSSNPNILVGAIVG 83 (124)
Q Consensus 4 ~~~~~y~~~a~~QidYiLG~Np~g~SyvvG~G~~~P~~pHHR~ss~p~~~~~p~~~~c~~g~~~~~~~~~p~~l~GalVG 83 (124)
....+|+++|++|||||||+||+++|||||+|.|+|++||||.|++......+ ...+++++++|+|||
T Consensus 324 ~~~~~~~~~A~~qldylLG~NP~~~SyvtG~G~~~p~~pHHr~s~~~~~~~~~------------~~~p~~~~~~G~lvG 391 (431)
T d1ia6a_ 324 NPDQSLLDLAKKQVDYILGDNPANMSYIIGYGSNWCIHPHHRAANGYTYANGD------------NAKPAKHLLTGALVG 391 (431)
T ss_dssp SCCHHHHHHHHHHHHHHHTCSTTCCCSBTTSSSSCCSCCBCHHHHCCCCC--C------------TTSCCSSCCTTCBCC
T ss_pred CChHHHHHHHHhccceecccCCCCCCCeecCCCCCCCCCccccccCCCcccCC------------CCCCCCCCcceeEee
Confidence 34578999999999999999999999999999999999999998765432110 122347899999999
Q ss_pred CCCCCCCccccCCCcccccccccchhhHHHHHHHhhcCCC
Q 043973 84 GPNQNDGFPDDRSDYSHSEPATYINAAMVGPLAYFAGGKS 123 (124)
Q Consensus 84 GP~~~d~y~D~r~~y~~nEvaid~NA~lv~~lA~l~~~~~ 123 (124)
|||..++|.|+|++|++|||||||||+||++||+|++.++
T Consensus 392 GPn~~~~y~D~~~~y~~nE~ai~~NA~lv~~la~~~~~~~ 431 (431)
T d1ia6a_ 392 GPDQNDKFLDDANQYQYTEVALDYNAGLVGVLAGAIKFFG 431 (431)
T ss_dssp CCCTTSCCCCSTTCHHHHBCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCcCcchhhhhhHHHHhHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999987654
>d1g87a1 a.102.1.2 (A:3-456) Endo/exocellulase:cellobiose E-4, N-terminal domain {Clostridium cellulolyticum, atcc 35319 [TaxId: 1521]}
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class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Cellulases catalytic domain
domain: Endo/exocellulase:cellobiose E-4, N-terminal domain
species: Clostridium cellulolyticum, atcc 35319 [TaxId: 1521]
Probab=100.00 E-value=1.1e-37 Score=259.09 Aligned_cols=103 Identities=29% Similarity=0.435 Sum_probs=89.9
Q ss_pred hhHHHHHHHhcchhhcCCCCCCCceEEeeCCCCCCCcccCCCCccccCCCCCcccCCCCCccccC--CCCCCCcceeeec
Q 043973 6 PRGKIRNKMYKVDYILGVNPLKMSYMVGFGPNFSRRIHHRGSSLLSLANHPQSIRCDGGFEPFFH--SSNPNILVGAIVG 83 (124)
Q Consensus 6 ~~~y~~~a~~QidYiLG~Np~g~SyvvG~G~~~P~~pHHR~ss~p~~~~~p~~~~c~~g~~~~~~--~~~p~~l~GalVG 83 (124)
.++|+++|++|||||||+|| +|||||||+|+|++||||.|++... .+.. .++|++|+|+|||
T Consensus 336 ~~~y~~~a~~qldylLG~Np--~S~VtG~G~~~p~~pHHR~s~~~~~--------------~~~~~~~~~~~~~~GalvG 399 (454)
T d1g87a1 336 VSVYKDFLKSQIDYALGSTG--RSFVVGYGVNPPQHPHHRTAHGSWT--------------DQMTSPTYHRHTIYGALVG 399 (454)
T ss_dssp HHHHHHHHHHHHHHHHTTTS--SCCBTTSSSSCCSCCBCHHHHTCSS--------------SCTTSSSSCSSCCTTCBCC
T ss_pred HHHHHHHHHHcchhhccCCC--cceEeccCCCCCCCCcchhhccCCc--------------ccccCCCCCCCCCceEEec
Confidence 36799999999999999997 6999999999999999999875321 1222 3347899999999
Q ss_pred CCCCCCCccccCCCcccccccccchhhHHHHHHHhhcCCCC
Q 043973 84 GPNQNDGFPDDRSDYSHSEPATYINAAMVGPLAYFAGGKSG 124 (124)
Q Consensus 84 GP~~~d~y~D~r~~y~~nEvaid~NA~lv~~lA~l~~~~~~ 124 (124)
|||.+|+|.|+|.+|++|||||||||+||++||+|+...+|
T Consensus 400 GPn~~~~y~D~~~~y~~nEvaid~NA~lv~~la~l~~~~~~ 440 (454)
T d1g87a1 400 GPDNADGYTDEINNYVNNEIACDYNAGFTGALAKMYKHSGG 440 (454)
T ss_dssp CCCTTSCCCCCTTCHHHHBCCHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCcccchhhhhhhHHHhhHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999875543
>d1clca1 a.102.1.2 (A:135-575) CelD cellulase, C-terminal domain {Clostridium thermocellum [TaxId: 1515]}
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class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Cellulases catalytic domain
domain: CelD cellulase, C-terminal domain
species: Clostridium thermocellum [TaxId: 1515]
Probab=100.00 E-value=1.9e-37 Score=256.71 Aligned_cols=95 Identities=25% Similarity=0.290 Sum_probs=87.5
Q ss_pred ChhHHHHHHHhcchhhcCCCCCCCceEEeeCCCCCCCcccCCCCccccCCCCCcccCCCCCccccCCCCCCCcceeeecC
Q 043973 5 IPRGKIRNKMYKVDYILGVNPLKMSYMVGFGPNFSRRIHHRGSSLLSLANHPQSIRCDGGFEPFFHSSNPNILVGAIVGG 84 (124)
Q Consensus 5 ~~~~y~~~a~~QidYiLG~Np~g~SyvvG~G~~~P~~pHHR~ss~p~~~~~p~~~~c~~g~~~~~~~~~p~~l~GalVGG 84 (124)
...+|++||++|||||||+||+++|||||||.|+|++||||.|+|+.+ +++++|+||||
T Consensus 344 ~~~~y~~~A~~qldyiLG~NP~~~Syv~G~G~~~p~~pHHr~s~~~~~---------------------~~p~pG~lvGG 402 (441)
T d1clca1 344 PNNDYVNAALDAISHVFGRNYYNRSYVTGLGINPPMNPHDRRSGADGI---------------------WEPWPGYLVGG 402 (441)
T ss_dssp CCHHHHHHHHHHHHHHHTCSTTCCCSBTTSSSSCCSSCBCHHHHHSSC---------------------SSCCSSCBCCC
T ss_pred CchHHHHHHHHhhhHHhcCCCCCCeeEeCCCCCCCCCCcCccccCCCC---------------------CCCCCcCccCC
Confidence 457899999999999999999999999999999999999999987542 46788999999
Q ss_pred CCC-CCCccccCCCcccccccccchhhHHHHHHHhhc
Q 043973 85 PNQ-NDGFPDDRSDYSHSEPATYINAAMVGPLAYFAG 120 (124)
Q Consensus 85 P~~-~d~y~D~r~~y~~nEvaid~NA~lv~~lA~l~~ 120 (124)
|+. .++|.|+|++|++|||||||||+||++||+|+.
T Consensus 403 p~~~~~~y~D~~~~y~~nEvaidyNA~~v~~la~l~~ 439 (441)
T d1clca1 403 GWPGPKDWVDIQDSYQTNEIAINWNAALIYALAGFVN 439 (441)
T ss_dssp CCSSTTCCCCCTTCTTTSBCCHHHHHHHHHHHHTTTT
T ss_pred CCCCccccCccccchhhcccchhhhHHHHHHHHHHhh
Confidence 975 689999999999999999999999999999985
>d1ks8a_ a.102.1.2 (A:) Endo-b-1,4-glucanase {Termite (Nasutitermes takasagoensis) [TaxId: 62960]}
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class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Cellulases catalytic domain
domain: Endo-b-1,4-glucanase
species: Termite (Nasutitermes takasagoensis) [TaxId: 62960]
Probab=100.00 E-value=4.8e-37 Score=253.73 Aligned_cols=108 Identities=41% Similarity=0.584 Sum_probs=93.8
Q ss_pred cChhHHHHHHHhcchhhcCCCCCCCceEEeeCCCCCCCcccCCCCccccCCCCCcccCCCCCccccCC--CCCCCcceee
Q 043973 4 VIPRGKIRNKMYKVDYILGVNPLKMSYMVGFGPNFSRRIHHRGSSLLSLANHPQSIRCDGGFEPFFHS--SNPNILVGAI 81 (124)
Q Consensus 4 ~~~~~y~~~a~~QidYiLG~Np~g~SyvvG~G~~~P~~pHHR~ss~p~~~~~p~~~~c~~g~~~~~~~--~~p~~l~Gal 81 (124)
..+++|+++|++|||||||+|| +|||||||+|+|++||||.|+++... ..|.. ...+. +++++++|+|
T Consensus 322 ~~~~~y~~~A~~qldylLG~Np--~s~V~G~G~~~p~~pHHr~s~~~~~~-----~~~~~---~~~~~~~p~~~~l~G~l 391 (433)
T d1ks8a_ 322 LSASSYRQFAQTQIDYALGDGG--RSFVCGFGSNPPTRPHHRSSSCPPAP-----ATCDW---NTFNSPDPNYHVLSGAL 391 (433)
T ss_dssp SSHHHHHHHHHHHHHHHHTTTS--SCCBTTSSSSCCSCCSCHHHHCCCTT-----SCCSH---HHHTCSSCCSSCCTTCB
T ss_pred CCHHHHHHHHHHhHhhccCCCC--CceEEeeCCCCCCCCCCchhcCCCCC-----CCCCC---CCCCCCCCCCCCCCCee
Confidence 4568999999999999999997 69999999999999999999987532 24432 12333 3478999999
Q ss_pred ecCCCCCCCccccCCCcccccccccchhhHHHHHHHhhcC
Q 043973 82 VGGPNQNDGFPDDRSDYSHSEPATYINAAMVGPLAYFAGG 121 (124)
Q Consensus 82 VGGP~~~d~y~D~r~~y~~nEvaid~NA~lv~~lA~l~~~ 121 (124)
||||+..|+|.|+|.+|++|||||||||+||++||+|+..
T Consensus 392 vGGP~~~~~y~D~~~~y~~nEvaid~NA~lv~~la~l~~~ 431 (433)
T d1ks8a_ 392 VGGPDQNDNYVDDRSDYVHNEVATDYNAGFQSALAALVAL 431 (433)
T ss_dssp CCCCCTTSCCCCCTTCHHHHCCCHHHHHHHHHHHHHHHHT
T ss_pred eCCCCCCCCCCcCcchhhhhhHHHHhHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999865
>d1ut9a1 a.102.1.2 (A:306-816) Cellulose 1,4-beta-cellobiosidase CbhA {Clostridium thermocellum [TaxId: 1515]}
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class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Cellulases catalytic domain
domain: Cellulose 1,4-beta-cellobiosidase CbhA
species: Clostridium thermocellum [TaxId: 1515]
Probab=100.00 E-value=1.5e-35 Score=248.27 Aligned_cols=112 Identities=20% Similarity=0.218 Sum_probs=92.9
Q ss_pred ChhHHHHHHHhcchhhcCCCCCCCceEEeeCCCCCCCcccCCCCccccCCCCCcccCCCCCccccCCCC----CCCccee
Q 043973 5 IPRGKIRNKMYKVDYILGVNPLKMSYMVGFGPNFSRRIHHRGSSLLSLANHPQSIRCDGGFEPFFHSSN----PNILVGA 80 (124)
Q Consensus 5 ~~~~y~~~a~~QidYiLG~Np~g~SyvvG~G~~~P~~pHHR~ss~p~~~~~p~~~~c~~g~~~~~~~~~----p~~l~Ga 80 (124)
...+|+++|++|||||||+||+++|||||||.|+|++||||.++|+....-+ .|..|+. ..-|+ .++|.|+
T Consensus 394 ~~~~y~~~a~~qldyiLG~NP~g~Syv~G~G~~~p~~pHHr~~~~~~~~~~~---~~~~G~l--~gGPn~~~~~~~l~g~ 468 (511)
T d1ut9a1 394 GDSKYLDGMFDGISYLLGRNAMDQSYVTGYGERPLQNPHDRFWTPQTSKRFP---APPPGII--SGGPNSRFEDPTINAA 468 (511)
T ss_dssp CCTHHHHHHHHHHHHHBTCSTTCCBCBBTCSSSCBCCCBCSSSCTTTCTTSC---CCCSSCB--CCCCCTTCCSHHHHHH
T ss_pred CcHHHHHHHHHhcceecccCCCCCeeEecCCCCCCCCCcchhhccCccccCC---CCCCcCc--cCCCCCCCCCcceeee
Confidence 4568999999999999999999999999999999999999999986543222 1223441 11222 2468899
Q ss_pred eecCCCCCCCccccCCCcccccccccchhhHHHHHHHhhcC
Q 043973 81 IVGGPNQNDGFPDDRSDYSHSEPATYINAAMVGPLAYFAGG 121 (124)
Q Consensus 81 lVGGP~~~d~y~D~r~~y~~nEvaid~NA~lv~~lA~l~~~ 121 (124)
+||||+..|+|.|+|.+|++|||||||||+||++||+|...
T Consensus 469 ~~gg~~~~~~y~D~~~~y~~nE~aid~NA~~v~~la~l~~~ 509 (511)
T d1ut9a1 469 VKKDTPPQKCFIDHTDSWSTNEITVNWNAPFAWVTAYLDQY 509 (511)
T ss_dssp SCTTCCGGGCCCCCTTCHHHHBCCHHHHHHHHHHHHHHHHH
T ss_pred ecCCCCcccCcCccccchhhchhhhHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999753