Citrus Sinensis ID: 043986

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-----
QVMVEYQKELKGLAEKILGLMFRSLGLTQEDIAWFKPKYGCKSPQGVLQLNSYPVCPDPNRAMGLAPHTDSSLLTSLYQGNTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNGRFKSALHRALVNNTRHRISTAYFYGPPQDVKISPSVKLTDHDHPILYRPVTWREYLDAKATHFNKAIELIRYDASSC
cHHHHHHHHHHHHHHHHHHHHHHHccccHHHHcHHccccccccccEEEEEccccccccccccccccccccccccEEEEEcccccEEEEEccccEEEEccccccEEEEcccEEEEEEccccccEEcEEEEcccccEEEEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccc
cHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcccccccccccEEEEccccccccccHcccccccccccEEEEEEEcccccEEEEEccccEEEcccccccEEEEEcHHHHHHcccccccccEEEcccccccEEEEEEEEEccccEEEcccHHHcccccccccccccHHHHHHHHHHHHHHccccEEEEEccc
QVMVEYQKELKGLAEKILGLMFRSlgltqediawfkpkygckspqgvlqlnsypvcpdpnramglaphtdsslltslyqgntsglqvyrdnvgwvpvhpvsGALVVIVGDLMQITCNGRFKSALHRALVNNTRHristayfygppqdvkispsvkltdhdhpilyrpvtwREYLDAKATHFNKAIELIRYDASSC
QVMVEYQKELKGLAEKILGLMFRSLGLTQEDIAWFKPKYGCKSPQGVLQLNSYPVCPDPNRAMGLAPHTDSSLLTSLYQGNTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNGRFKSALHRALVNNTRHRISTAYFYGPPQDVkispsvkltdhdhPILYRPVTWREYLDAKATHFNKAIELIRYDASSC
QVMVEYQKELKGLAEKILGLMFRSLGLTQEDIAWFKPKYGCKSPQGVLQLNSYPVCPDPNRAMGLAPHTDSSLLTSLYQGNTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNGRFKSALHRALVNNTRHRISTAYFYGPPQDVKISPSVKLTDHDHPILYRPVTWREYLDAKATHFNKAIELIRYDASSC
********ELKGLAEKILGLMFRSLGLTQEDIAWFKPKYGCKSPQGVLQLNSYPVCPDPNRAMGLAPHTDSSLLTSLYQGNTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNGRFKSALHRALVNNTRHRISTAYFYGPPQDVKISPSVKLTDHDHPILYRPVTWREYLDAKATHFNKAIELIRY*****
QVMVEYQKELKGLAEKILGLMFRSLGLTQEDIAWFKPKYGCKSPQGVLQLNSYPVCPDPNRAMGLAPHTDSSLLTSLYQGNTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNGRFKSALHRALVNNTRHRISTAYFYGPPQDVKISPSVKLTD*DHPILYRPVTWREYLDAKATHFNKAIELIRYDA***
QVMVEYQKELKGLAEKILGLMFRSLGLTQEDIAWFKPKYGCKSPQGVLQLNSYPVCPDPNRAMGLAPHTDSSLLTSLYQGNTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNGRFKSALHRALVNNTRHRISTAYFYGPPQDVKISPSVKLTDHDHPILYRPVTWREYLDAKATHFNKAIELIRYDASSC
QVMVEYQKELKGLAEKILGLMFRSLGLTQEDIAWFKPKYGCKSPQGVLQLNSYPVCPDPNRAMGLAPHTDSSLLTSLYQGNTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNGRFKSALHRALVNNTRHRISTAYFYGPPQDVKISPSVKLTDHDHPILYRPVTWREYLDAKATHFNKAIELIRYDASSC
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
QVMVEYQKELKGLAEKILGLMFRSLGLTQEDIAWFKPKYGCKSPQGVLQLNSYPVCPDPNRAMGLAPHTDSSLLTSLYQGNTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNGRFKSALHRALVNNTRHRISTAYFYGPPQDVKISPSVKLTDHDHPILYRPVTWREYLDAKATHFNKAIELIRYDASSC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query195 2.2.26 [Sep-21-2011]
Q39103358 Gibberellin 3-beta-dioxyg yes no 0.964 0.525 0.563 1e-56
Q9SVS8349 Gibberellin 3-beta-dioxyg no no 0.958 0.535 0.538 8e-56
Q9ZT84347 Gibberellin 3-beta-dioxyg no no 0.928 0.521 0.535 7e-52
Q9C971355 Gibberellin 3-beta-dioxyg no no 0.964 0.529 0.518 1e-49
Q3I411370 Gibberellin 3-beta-dioxyg N/A no 0.984 0.518 0.425 3e-36
Q3I409369 Gibberellin 3-beta-dioxyg N/A no 0.984 0.520 0.425 4e-36
Q3I410370 Gibberellin 3-beta-dioxyg N/A no 0.984 0.518 0.425 6e-36
Q06942364 Naringenin,2-oxoglutarate N/A no 0.923 0.494 0.373 2e-27
P93771372 Gibberellin 20 oxidase 1 no no 0.953 0.5 0.338 1e-26
Q9S818358 Naringenin,2-oxoglutarate no no 0.923 0.502 0.363 2e-25
>sp|Q39103|G3OX1_ARATH Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA4 PE=1 SV=2 Back     alignment and function desciption
 Score =  219 bits (557), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 106/188 (56%), Positives = 132/188 (70%)

Query: 2   VMVEYQKELKGLAEKILGLMFRSLGLTQEDIAWFKPKYGCKSPQGVLQLNSYPVCPDPNR 61
           ++ EY++ +K LA K++ L   SLG+++EDI W          Q  LQLN YPVCP+P+R
Sbjct: 166 IVEEYEEHMKKLASKLMWLALNSLGVSEEDIEWASLSSDLNWAQAALQLNHYPVCPEPDR 225

Query: 62  AMGLAPHTDSSLLTSLYQGNTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNGRFK 121
           AMGLA HTDS+LLT LYQ NT+GLQV+RD++GWV V P  G+LVV VGDL  I  NG FK
Sbjct: 226 AMGLAAHTDSTLLTILYQNNTAGLQVFRDDLGWVTVPPFPGSLVVNVGDLFHILSNGLFK 285

Query: 122 SALHRALVNNTRHRISTAYFYGPPQDVKISPSVKLTDHDHPILYRPVTWREYLDAKATHF 181
           S LHRA VN TR R+S A+ +GP  D+KISP  KL       LY+ VTW+EYL  KATHF
Sbjct: 286 SVLHRARVNQTRARLSVAFLWGPQSDIKISPVPKLVSPVESPLYQSVTWKEYLRTKATHF 345

Query: 182 NKAIELIR 189
           NKA+ +IR
Sbjct: 346 NKALSMIR 353
Converts the inactive gibbberellin precursors GA9 and GA20 in the bioactives gibberellins GA4 and GA1.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 1EC: 5
>sp|Q9SVS8|G3OX3_ARATH Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=At4g21690 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZT84|G3OX2_ARATH Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA4H PE=1 SV=2 Back     alignment and function description
>sp|Q9C971|G3OX4_ARATH Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis thaliana GN=At1g80330 PE=1 SV=1 Back     alignment and function description
>sp|Q3I411|G3O21_WHEAT Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aestivum GN=GA3ox2-1 PE=1 SV=1 Back     alignment and function description
>sp|Q3I409|G3O23_WHEAT Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aestivum GN=GA3ox2-3 PE=2 SV=1 Back     alignment and function description
>sp|Q3I410|G3O22_WHEAT Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aestivum GN=GA3ox2-2 PE=2 SV=1 Back     alignment and function description
>sp|Q06942|FL3H_MALDO Naringenin,2-oxoglutarate 3-dioxygenase OS=Malus domestica PE=2 SV=1 Back     alignment and function description
>sp|P93771|GAOX1_ORYSJ Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. japonica GN=20ox1 PE=2 SV=2 Back     alignment and function description
>sp|Q9S818|FL3H_ARATH Naringenin,2-oxoglutarate 3-dioxygenase OS=Arabidopsis thaliana GN=F3H PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query195
255546615 356 gibberellin 3-beta hydroxylase, putative 0.994 0.544 0.654 4e-72
255549006 354 gibberellin 3-beta hydroxylase, putative 0.974 0.536 0.657 1e-71
190192212 356 gibberellin 3-oxidase1 [Chrysanthemum x 0.943 0.516 0.590 2e-59
4164145 363 gibberelin 3beta-hydroxylase [Lactuca sa 0.943 0.506 0.595 5e-59
225421145 356 gibberellin 3-oxidase [Solanum tuberosum 0.943 0.516 0.587 9e-59
340796371 368 GA3ox2 [Gossypium hirsutum] 0.964 0.510 0.587 2e-58
405779216 371 gibberellin 3-oxidase [Pyrus communis] 0.969 0.509 0.582 3e-58
365176184 368 gibberellin 3 oxidase 1 [Castanea mollis 0.964 0.510 0.585 4e-58
340796369 364 GA3ox1 [Gossypium hirsutum] 0.964 0.516 0.587 6e-58
4164147 362 gibberellin 3beta-hydroxylase [Lactuca s 0.974 0.524 0.581 6e-58
>gi|255546615|ref|XP_002514367.1| gibberellin 3-beta hydroxylase, putative [Ricinus communis] gi|223546823|gb|EEF48321.1| gibberellin 3-beta hydroxylase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  276 bits (705), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 127/194 (65%), Positives = 156/194 (80%)

Query: 2   VMVEYQKELKGLAEKILGLMFRSLGLTQEDIAWFKPKYGCKSPQGVLQLNSYPVCPDPNR 61
           VM   QKE+KGL+E+I+G+MF+SLGL +ED+ +   K G + PQG LQLNSYP CPDP+R
Sbjct: 160 VMEACQKEMKGLSERIIGIMFKSLGLNEEDVKFLGLKDGSQYPQGALQLNSYPKCPDPDR 219

Query: 62  AMGLAPHTDSSLLTSLYQGNTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNGRFK 121
           AMGLAPHTDSSL+T L+QG  SGLQV+++ +GWVPV PV  ALVV +GDLM I  NGRFK
Sbjct: 220 AMGLAPHTDSSLITVLHQGGVSGLQVFKEGIGWVPVSPVDDALVVNIGDLMHIISNGRFK 279

Query: 122 SALHRALVNNTRHRISTAYFYGPPQDVKISPSVKLTDHDHPILYRPVTWREYLDAKATHF 181
            A H+A+VN TRHRIS AYFYGPP DVKISP ++L D DHP+LY PVTW+EYLDAKA +F
Sbjct: 280 CAQHQAVVNKTRHRISVAYFYGPPGDVKISPLMQLVDFDHPVLYCPVTWKEYLDAKAIYF 339

Query: 182 NKAIELIRYDASSC 195
           +KA++ I+ D S C
Sbjct: 340 DKALDFIKNDKSIC 353

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255549006|ref|XP_002515559.1| gibberellin 3-beta hydroxylase, putative [Ricinus communis] gi|223545503|gb|EEF47008.1| gibberellin 3-beta hydroxylase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|190192212|dbj|BAG48320.1| gibberellin 3-oxidase1 [Chrysanthemum x morifolium] Back     alignment and taxonomy information
>gi|4164145|dbj|BAA37129.1| gibberelin 3beta-hydroxylase [Lactuca sativa] Back     alignment and taxonomy information
>gi|225421145|gb|ACN89834.1| gibberellin 3-oxidase [Solanum tuberosum subsp. andigenum] Back     alignment and taxonomy information
>gi|340796371|gb|AEK70424.1| GA3ox2 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|405779216|gb|AFS18537.1| gibberellin 3-oxidase [Pyrus communis] Back     alignment and taxonomy information
>gi|365176184|gb|AEW67998.1| gibberellin 3 oxidase 1 [Castanea mollissima] Back     alignment and taxonomy information
>gi|340796369|gb|AEK70423.1| GA3ox1 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|4164147|dbj|BAA37130.1| gibberellin 3beta-hydroxylase [Lactuca sativa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query195
TAIR|locus:2196623358 GA3OX1 "gibberellin 3-oxidase 0.964 0.525 0.563 4.9e-53
TAIR|locus:2119068349 GA3OX3 "gibberellin 3-oxidase 0.953 0.532 0.541 1.3e-52
TAIR|locus:2034205347 GA3OX2 "gibberellin 3-oxidase 0.969 0.544 0.523 1.1e-50
TAIR|locus:2034195355 GA3OX4 "gibberellin 3-oxidase 0.964 0.529 0.518 6.9e-47
UNIPROTKB|Q9FU53373 P0013F10.29 "GA 3beta-hydroxyl 0.989 0.517 0.409 8.3e-35
UNIPROTKB|Q6AT12384 OSJNBa0029B02.17 "Putative gib 0.958 0.486 0.395 9.5e-34
TAIR|locus:2089428364 LBO1 "LATERAL BRANCHING OXIDOR 0.830 0.445 0.385 1e-27
TAIR|locus:2127686348 AT4G10490 [Arabidopsis thalian 0.866 0.485 0.378 1.7e-27
TAIR|locus:2169697371 AT5G05600 [Arabidopsis thalian 0.866 0.455 0.367 4.5e-27
UNIPROTKB|P93771372 20ox1 "Gibberellin 20 oxidase 0.953 0.5 0.338 1.5e-26
TAIR|locus:2196623 GA3OX1 "gibberellin 3-oxidase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 106/188 (56%), Positives = 132/188 (70%)

Query:     2 VMVEYQKELKGLAEKILGLMFRSLGLTQEDIAWFKPKYGCKSPQGVLQLNSYPVCPDPNR 61
             ++ EY++ +K LA K++ L   SLG+++EDI W          Q  LQLN YPVCP+P+R
Sbjct:   166 IVEEYEEHMKKLASKLMWLALNSLGVSEEDIEWASLSSDLNWAQAALQLNHYPVCPEPDR 225

Query:    62 AMGLAPHTDSSLLTSLYQGNTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNGRFK 121
             AMGLA HTDS+LLT LYQ NT+GLQV+RD++GWV V P  G+LVV VGDL  I  NG FK
Sbjct:   226 AMGLAAHTDSTLLTILYQNNTAGLQVFRDDLGWVTVPPFPGSLVVNVGDLFHILSNGLFK 285

Query:   122 SALHRALVNNTRHRISTAYFYGPPQDVKISPSVKLTDHDHPILYRPVTWREYLDAKATHF 181
             S LHRA VN TR R+S A+ +GP  D+KISP  KL       LY+ VTW+EYL  KATHF
Sbjct:   286 SVLHRARVNQTRARLSVAFLWGPQSDIKISPVPKLVSPVESPLYQSVTWKEYLRTKATHF 345

Query:   182 NKAIELIR 189
             NKA+ +IR
Sbjct:   346 NKALSMIR 353
GO:0005506 "iron ion binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM;TAS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009686 "gibberellin biosynthetic process" evidence=IMP;TAS
GO:0009739 "response to gibberellin stimulus" evidence=IEP
GO:0009639 "response to red or far red light" evidence=IEP
GO:0008134 "transcription factor binding" evidence=IPI
GO:0010114 "response to red light" evidence=IEP
GO:0016707 "gibberellin 3-beta-dioxygenase activity" evidence=IDA;IMP;TAS
GO:0009740 "gibberellic acid mediated signaling pathway" evidence=TAS
TAIR|locus:2119068 GA3OX3 "gibberellin 3-oxidase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2034205 GA3OX2 "gibberellin 3-oxidase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2034195 GA3OX4 "gibberellin 3-oxidase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9FU53 P0013F10.29 "GA 3beta-hydroxylase" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q6AT12 OSJNBa0029B02.17 "Putative gibberellin 3 beta-hydroxylase" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2089428 LBO1 "LATERAL BRANCHING OXIDOREDUCTASE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127686 AT4G10490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169697 AT5G05600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P93771 20ox1 "Gibberellin 20 oxidase 1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.14.11.15LOW CONFIDENCE prediction!
3rd Layer1.14.11LOW CONFIDENCE prediction!
4th Layer1.14.11.7LOW CONFIDENCE prediction!
4th Layer1.14.11.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query195
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 1e-114
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 2e-38
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 3e-38
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 6e-38
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 6e-36
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 6e-36
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 6e-35
PLN02216357 PLN02216, PLN02216, protein SRG1 2e-34
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 3e-34
PLN02947374 PLN02947, PLN02947, oxidoreductase 1e-33
PLN02704335 PLN02704, PLN02704, flavonol synthase 9e-33
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 1e-32
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 1e-31
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 1e-30
PLN02997325 PLN02997, PLN02997, flavonol synthase 1e-30
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 2e-30
PLN02904357 PLN02904, PLN02904, oxidoreductase 4e-30
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 1e-29
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 2e-29
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 3e-28
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 8e-24
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 1e-23
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 2e-23
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 8e-21
PLN02485329 PLN02485, PLN02485, oxidoreductase 1e-18
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 1e-13
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information 
 Score =  329 bits (846), Expect = e-114
 Identities = 132/192 (68%), Positives = 149/192 (77%)

Query: 2   VMVEYQKELKGLAEKILGLMFRSLGLTQEDIAWFKPKYGCKSPQGVLQLNSYPVCPDPNR 61
           VM EYQKE+K LAE+++ LM  SLG+T+EDI W  PK G +  Q  LQLNSYPVCPDP+R
Sbjct: 166 VMEEYQKEMKKLAERLMWLMLGSLGITEEDIKWAGPKSGSQGAQAALQLNSYPVCPDPDR 225

Query: 62  AMGLAPHTDSSLLTSLYQGNTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNGRFK 121
           AMGLAPHTDSSLLT LYQ NTSGLQV+R+ VGWV V PV G+LVV VGDL+ I  NGRF 
Sbjct: 226 AMGLAPHTDSSLLTILYQSNTSGLQVFREGVGWVTVPPVPGSLVVNVGDLLHILSNGRFP 285

Query: 122 SALHRALVNNTRHRISTAYFYGPPQDVKISPSVKLTDHDHPILYRPVTWREYLDAKATHF 181
           S LHRA+VN TRHRIS AYFYGPP DV+ISP  KL D +HP LYR VTW+EYL  KA HF
Sbjct: 286 SVLHRAVVNKTRHRISVAYFYGPPSDVQISPLPKLVDPNHPPLYRSVTWKEYLATKAKHF 345

Query: 182 NKAIELIRYDAS 193
           NKA+ LIR    
Sbjct: 346 NKALSLIRNCNP 357

Length = 358
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 195
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02904357 oxidoreductase 100.0
PLN02947374 oxidoreductase 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02216357 protein SRG1 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02997325 flavonol synthase 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02704335 flavonol synthase 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02485329 oxidoreductase 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.94
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 97.1
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 96.11
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 95.64
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 95.2
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 91.07
TIGR02466201 conserved hypothetical protein. This family consis 89.22
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 83.0
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information 
Probab=100.00  E-value=4.5e-56  Score=383.78  Aligned_cols=190  Identities=69%  Similarity=1.132  Sum_probs=174.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhcCcCCCCCCcceeEEeecCCCCCCCCCcccccccCCCCeeEEeec
Q 043986            1 QVMVEYQKELKGLAEKILGLMFRSLGLTQEDIAWFKPKYGCKSPQGVLQLNSYPVCPDPNRAMGLAPHTDSSLLTSLYQG   80 (195)
Q Consensus         1 ~~~~~y~~~~~~l~~~ll~~i~~~Lgl~~~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~~~lTlL~q~   80 (195)
                      +++++|+++|.+++.+||++|+++|||++++|+.+........+.+.+|+||||||+.++..+|+++|||+|+||||+||
T Consensus       165 ~~~~~Y~~~~~~L~~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTiL~Qd  244 (358)
T PLN02254        165 DVMEEYQKEMKKLAERLMWLMLGSLGITEEDIKWAGPKSGSQGAQAALQLNSYPVCPDPDRAMGLAPHTDSSLLTILYQS  244 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcccccCcceeEEEecCCCCCCcccccCcCCccCCCcEEEEecC
Confidence            36899999999999999999999999999888654311112456689999999999988889999999999999999999


Q ss_pred             CCCceeEEeCCCceEEeccCCCcEEEecccchhhccCCccccccccccCCCCCcceeEEEeeCCCCCceEecCcCccCCC
Q 043986           81 NTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNGRFKSALHRALVNNTRHRISTAYFYGPPQDVKISPSVKLTDHD  160 (195)
Q Consensus        81 ~~~GLqv~~~~g~W~~v~~~~g~~vVnvGd~l~~~TnG~~~s~~HRVv~~~~~~R~S~~~F~~p~~d~~i~pl~~~~~~~  160 (195)
                      +++||||++++|+|++|+|+||++|||+||+||+||||+|||+.|||+.++.++|||++||+.|+.|++|+|++++++++
T Consensus       245 ~v~GLQV~~~~~~Wi~V~p~pgalVVNiGD~lq~~SNg~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~i~pl~~lv~~~  324 (358)
T PLN02254        245 NTSGLQVFREGVGWVTVPPVPGSLVVNVGDLLHILSNGRFPSVLHRAVVNKTRHRISVAYFYGPPSDVQISPLPKLVDPN  324 (358)
T ss_pred             CCCCceEECCCCEEEEcccCCCCEEEEhHHHHHHHhCCeeccccceeecCCCCCEEEEEEEecCCCCcEEeCcHHhcCCC
Confidence            99999999888789999999999999999999999999999999999998888999999999999999999999999998


Q ss_pred             CCCCCCCccHHHHHHHHHHhhhhhhhhhcc
Q 043986          161 HPILYRPVTWREYLDAKATHFNKAIELIRY  190 (195)
Q Consensus       161 ~~~~y~~~~~~ey~~~~~~~~~~~l~~~~~  190 (195)
                      +|++|++++|+||+..+.+.+.+.++.+|+
T Consensus       325 ~p~~Y~~~t~~ey~~~~~~~~~~~~~~~~~  354 (358)
T PLN02254        325 HPPLYRSVTWKEYLATKAKHFNKALSLIRN  354 (358)
T ss_pred             CCcccCCcCHHHHHHHHHHhhhhhhhhhhc
Confidence            999999999999999998888888888776

>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query195
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 1e-21
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 1e-21
1w9y_A319 The Structure Of Acc Oxidase Length = 319 1e-21
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 8e-21
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 4e-08
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 1e-07
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure 
Iteration: 1

 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 95/174 (54%), Gaps = 4/174 (2%)
Query: 5   EYQKELKGLAEKILGLMFRSLGLTQEDIAWFKPKYGCKSPQGVLQLNSYPVCPDPNRAMG 64
           EY K L+ LA K+   +   LGL  + +   K   G +     +++N YP CP P  A+G
Sbjct: 171 EYAKCLRLLATKVFKALSVGLGLEPDRLE--KEVGGLEELLLQMKINYYPKCPQPELALG 228
Query: 65  LAPHTDSSLLTSLYQGNTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNGRFKSAL 124
           +  HTD S LT +      GLQ++ +   WV    V  ++V+ +GD ++I  NG++KS L
Sbjct: 229 VEAHTDVSALTFILHNMVPGLQLFYEG-KWVTAKCVPDSIVMHIGDTLEILSNGKYKSIL 287
Query: 125 HRALVNNTRHRISTAYFYGPPQD-VKISPSVKLTDHDHPILYRPVTWREYLDAK 177
           HR LVN  + RIS A F  PP+D + + P  ++   + P  + P T+ ++++ K
Sbjct: 288 HRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHK 341
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query195
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 1e-73
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 3e-73
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 2e-53
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 3e-46
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 6e-46
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 3e-44
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
 Score =  224 bits (572), Expect = 1e-73
 Identities = 59/183 (32%), Positives = 100/183 (54%), Gaps = 7/183 (3%)

Query: 2   VMVEYQKELKGLAEKILGLMFRSLGLTQEDIAWFKPKYGCKSPQGVLQLNSYPVCPDPNR 61
           VM ++ K L+ LAE++L L+  +LGL +  +      YG K P    ++++YP CP P+ 
Sbjct: 113 VMRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAF--YGSKGPNFGTKVSNYPPCPKPDL 170

Query: 62  AMGLAPHTDSSLLTSLYQGN-TSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNGRF 120
             GL  HTD+  +  L+Q +  SGLQ+ +D   W+ V P+  ++VV +GD +++  NG++
Sbjct: 171 IKGLRAHTDAGGIILLFQDDKVSGLQLLKDG-QWIDVPPMRHSIVVNLGDQLEVITNGKY 229

Query: 121 KSALHRALVNNTRHRISTAYFYGPPQDVKISPSVKLTDH---DHPILYRPVTWREYLDAK 177
           KS +HR +      R+S A FY P  D  I P+  L +    ++  +Y    + +Y+   
Sbjct: 230 KSVMHRVIAQKDGARMSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYMKLY 289

Query: 178 ATH 180
           A  
Sbjct: 290 AGL 292
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query195
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 95.45
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 94.71
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 92.68
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 91.92
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 91.2
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 90.95
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 89.85
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 88.12
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 80.28
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
Probab=100.00  E-value=3.6e-54  Score=365.13  Aligned_cols=176  Identities=24%  Similarity=0.383  Sum_probs=161.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhcCcCCCCCCcceeEEeecCCCCCCCCCcccccccCCCCeeEEeec
Q 043986            1 QVMVEYQKELKGLAEKILGLMFRSLGLTQEDIAWFKPKYGCKSPQGVLQLNSYPVCPDPNRAMGLAPHTDSSLLTSLYQG   80 (195)
Q Consensus         1 ~~~~~y~~~~~~l~~~ll~~i~~~Lgl~~~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~~~lTlL~q~   80 (195)
                      +++++|+++|.+++.+|+++|+++|||++++|+...     ..+.+.+|++||||++.++..+|+++|||+|+||||+||
T Consensus       129 ~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~-----~~~~~~lr~~~Ypp~~~~~~~~g~~~HtD~g~lTlL~qd  203 (312)
T 3oox_A          129 HDVSWLYNSLDGMGGKVLEAIATYLKLERDFFKPTV-----QDGNSVLRLLHYPPIPKDATGVRAGAHGDINTITLLLGA  203 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTHHHH-----TTCCCEEEEEEECCCSSCCC--CEEEECCCSSEEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHh-----cCCcceeeeEecCCCCCCcCCcCccceecCceEEEEeEc
Confidence            368999999999999999999999999999886542     446689999999999876556999999999999999999


Q ss_pred             CCCceeEEeCCCceEEeccCCCcEEEecccchhhccCCccccccccccCCC----CCcceeEEEeeCCCCCceEecCcCc
Q 043986           81 NTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNGRFKSALHRALVNN----TRHRISTAYFYGPPQDVKISPSVKL  156 (195)
Q Consensus        81 ~~~GLqv~~~~g~W~~v~~~~g~~vVnvGd~l~~~TnG~~~s~~HRVv~~~----~~~R~S~~~F~~p~~d~~i~pl~~~  156 (195)
                      +++||||++.+|+|++|+|+||++|||+||+||+||||+|||+.|||+.++    +.+|||++||++|+.|++|+|++++
T Consensus       204 ~v~GLqV~~~~g~W~~V~p~pg~~vVNiGD~l~~~TnG~~kS~~HRVv~~~~~~~~~~R~Sia~F~~P~~d~~i~pl~~~  283 (312)
T 3oox_A          204 EEGGLEVLDRDGQWLPINPPPGCLVINIGDMLERLTNNVLPSTVHRVVNPPPERRGVPRYSTPFFLHFASDYEIKTLQNC  283 (312)
T ss_dssp             TTSCEEEECTTSCEEECCCCSSCEEEEECHHHHHHTTTSSCCCCEEECCCCGGGTTSCEEECCEEECCCTTCEECCCGGG
T ss_pred             CcCceEEECCCCcEEECCCCCCeEEEEhHHHHHHHhCCeecCCCceEeCCCccCCCCCEEEEEEEecCCCCcEEecCccc
Confidence            999999998888999999999999999999999999999999999998764    4579999999999999999999999


Q ss_pred             cCCCCCCCCC-CccHHHHHHHHHHhh
Q 043986          157 TDHDHPILYR-PVTWREYLDAKATHF  181 (195)
Q Consensus       157 ~~~~~~~~y~-~~~~~ey~~~~~~~~  181 (195)
                      +++++|++|+ +++++||+..|++.+
T Consensus       284 v~~~~p~~y~~~~t~~eyl~~r~~~~  309 (312)
T 3oox_A          284 VTAENPDRYPESITADEFLQQRLREI  309 (312)
T ss_dssp             CCSSSCCSCSSCEEHHHHHHHHHHHH
T ss_pred             cCCCCcccCCCCeeHHHHHHHHHHHh
Confidence            9999999999 999999999998765
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 195
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 2e-37
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 2e-32
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 2e-29
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 6e-25
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  130 bits (327), Expect = 2e-37
 Identities = 60/178 (33%), Positives = 95/178 (53%), Gaps = 4/178 (2%)

Query: 1   QVMVEYQKELKGLAEKILGLMFRSLGLTQEDIAWFKPKYGCKSPQGVLQLNSYPVCPDPN 60
           +   EY K L+ LA K+   +   LGL  E     K   G +     +++N YP CP P 
Sbjct: 166 EATSEYAKCLRLLATKVFKALSVGLGL--EPDRLEKEVGGLEELLLQMKINYYPKCPQPE 223

Query: 61  RAMGLAPHTDSSLLTSLYQGNTSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNGRF 120
            A+G+  HTD S LT +      GLQ++ +   WV    V  ++V+ +GD ++I  NG++
Sbjct: 224 LALGVEAHTDVSALTFILHNMVPGLQLFYEG-KWVTAKCVPDSIVMHIGDTLEILSNGKY 282

Query: 121 KSALHRALVNNTRHRISTAYFYGPPQD-VKISPSVKLTDHDHPILYRPVTWREYLDAK 177
           KS LHR LVN  + RIS A F  PP+D + + P  ++   + P  + P T+ ++++ K
Sbjct: 283 KSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHK 340
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query195
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 94.1
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 91.7
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: 1-aminocyclopropane-1-carboxylate oxidase 1
species: Petunia hybrida [TaxId: 4102]

Probab=100.00  E-value=2.2e-51  Score=344.61  Aligned_cols=175  Identities=33%  Similarity=0.600  Sum_probs=155.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhcCcCCCCCCcceeEEeecCCCCCCCCCcccccccCCCCeeEEeecC
Q 043986            2 VMVEYQKELKGLAEKILGLMFRSLGLTQEDIAWFKPKYGCKSPQGVLQLNSYPVCPDPNRAMGLAPHTDSSLLTSLYQGN   81 (195)
Q Consensus         2 ~~~~y~~~~~~l~~~ll~~i~~~Lgl~~~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~~~lTlL~q~~   81 (195)
                      ++++|+++|.+++.+|+++++++||+++++|......  .....+.+|++||||++.++...|+++|||+|+||+|+|++
T Consensus       112 ~~~~y~~~~~~la~~ll~~la~~Lgl~~~~f~~~~~~--~~~~~~~lr~~~YP~~~~~~~~~g~~~HtD~~~lTlL~q~~  189 (307)
T d1w9ya1         112 VMRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYG--SKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDD  189 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHHHHT--TTCCEEEEEEEECCCCSCGGGGSSCCCBCCSSSEEEEEESS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHhhhhc--cccccccceecCCCCCcccccccccccccccceeEEeeccC
Confidence            6889999999999999999999999999988543211  24567889999999999988889999999999999999964


Q ss_pred             -CCceeEEeCCCceEEeccCCCcEEEecccchhhccCCccccccccccCCCCCcceeEEEeeCCCCCceEecCcCccC--
Q 043986           82 -TSGLQVYRDNVGWVPVHPVSGALVVIVGDLMQITCNGRFKSALHRALVNNTRHRISTAYFYGPPQDVKISPSVKLTD--  158 (195)
Q Consensus        82 -~~GLqv~~~~g~W~~v~~~~g~~vVnvGd~l~~~TnG~~~s~~HRVv~~~~~~R~S~~~F~~p~~d~~i~pl~~~~~--  158 (195)
                       ++|||+..+ |+|++|+|.+|++|||+||+||+||||+||||.|||+.+++.+|||++||++|+.|++|+|++++++  
T Consensus       190 ~~ggl~~~~~-g~Wi~v~p~~~~~vVnvGD~l~~~Tng~~kSt~HRVv~~~~~~R~Si~~F~~p~~d~~i~p~~~~v~~~  268 (307)
T d1w9ya1         190 KVSGLQLLKD-GQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQKDGARMSLASFYNPGSDAVIYPAPALVEKE  268 (307)
T ss_dssp             SCCCEEEEET-TEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSSCCEEEEEEEECCTTCEECCCGGGC---
T ss_pred             CCCeEEEecC-CcEEEeccCCCeEEEEcchhhHHhhCCcccCcCceeecCCCCCcEEEEEEeeCCCCCEEeCCHHHhccc
Confidence             799999875 5999999999999999999999999999999999999998899999999999999999999999986  


Q ss_pred             -CCCCCCCCCccHHHHHHHHHH
Q 043986          159 -HDHPILYRPVTWREYLDAKAT  179 (195)
Q Consensus       159 -~~~~~~y~~~~~~ey~~~~~~  179 (195)
                       +++|++|+|+|++||++.+.+
T Consensus       269 ~~~~p~~y~~~t~~ey~~~~~~  290 (307)
T d1w9ya1         269 AEENKQVYPKFVFDDYMKLYAG  290 (307)
T ss_dssp             -----CCCCCEEHHHHHHTTTT
T ss_pred             CccCCCCCCCeeHHHHHHHHHh
Confidence             457899999999999987653
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure