Citrus Sinensis ID: 044022

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-
Protein Sequence
MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHccccccccEEcEEcccccEEEEEEEcccccHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccHHHHHcccccccccccHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEccccccHHHHHHHHHHHHHHHHHHHHHHHEEEEccccEEEEEEEcccccHHHHHcccHHHHHHHHHHHHHHHHHHHHccccEEEEcccHHHHHEEccccccHHcHccHHEEccccccEEcccEEEEEcccccHHHHHccccccccHHHHHHEEEEEEEccccccccccccccccHHHHHHHHHHHHHcccHHHHccHHHHccccccccHHHHHHHHHHHHHHHcccHHHcccccc
Coil and Loop (DISEMBL)
mkfygheyhrhtygscINNITYAAQMSHNHILKRIgcclqtpipilvfqsveygtlrdcifgaplprlkIASDIVNSLAylhfgfprpivlrnfktqnilfneENVAKWFDFLLSisipegethittdrvigtrgysapeYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKdthdhgcfFNEYLKNYLedkrftgipapiivqdipciEKEQQLHASAQLTLECvnnspedrptmvd
Flexible Loop (DISEMBL)
MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIpegethittdrvigTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLtlecvnnspedrptmvd
Low Complexity Region (SEG)
MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD
Disordered region (IsUnstruct)
**FYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLEC*************
Disordered Region (DISOPRED)
*******YHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIH*************FFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSP*DRPT***
Disordered Region (DISEMBL)
MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD
Disordered Region (DISPRO)
****GH*YHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSP********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	241	2.2.26 [Sep-21-2011]
Q9LSV3	433	Putative wall-associated	no	no	0.900	0.501	0.336	3e-30
Q9LMN7	733	Wall-associated receptor	no	no	0.892	0.293	0.343	3e-29
Q9LMN6	738	Wall-associated receptor	no	no	0.892	0.291	0.339	5e-29
Q9LMN8	741	Wall-associated receptor	no	no	0.892	0.290	0.347	4e-28
Q39191	735	Wall-associated receptor	no	no	0.892	0.292	0.334	8e-28
Q9LMP1	732	Wall-associated receptor	no	no	0.858	0.282	0.336	8e-28
Q9M092	786	Wall-associated receptor	no	no	0.883	0.270	0.341	1e-27
Q0WNY5	793	Wall-associated receptor	no	no	0.896	0.272	0.341	1e-27
Q9LFP7	493	Probable receptor-like pr	no	no	0.887	0.434	0.344	4e-27
O80795	372	Probable inactive recepto	no	no	0.921	0.596	0.326	4e-27

>sp|Q9LSV3|WAKLS_ARATH Putative wall-associated receptor kinase-like 16 OS=Arabidopsis thaliana GN=WAKL16 PE=3 SV=1

 Score =  132 bits (331), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 131/232 (56%), Gaps = 15/232 (6%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLP-------RLK 69
           IN +   +Q++H +++K +GCCL+T +P+LV++ +  G+L D + G+          RL+
Sbjct: 150 INEVLVLSQINHRNVVKLLGCCLETEVPLLVYEFITGGSLFDHLHGSMFVSSLTWEHRLE 209

Query: 70  IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR 129
           IA ++  ++AYLH G   PI+ R+ KT+NIL +E   AK  DF  S   P  +  +TT  
Sbjct: 210 IAIEVAGAIAYLHSGASIPIIHRDIKTENILLDENLTAKVADFGASKLKPMDKEQLTT-M 268

Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLK 189
           V GT GY  PEY +  +LNEKS+V+SFG  L EL++G+  +     +T  H      Y  
Sbjct: 269 VQGTLGYLDPEYYTTWLLNEKSDVYSFGVVLMELISGQKALCFERPETSKH---LVSYFV 325

Query: 190 NYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD 241
              ++ R   I    ++ +    E ++++H +A++ +EC     E+RP M++
Sbjct: 326 LATKENRLHEIIDDQVLNE----ENQREIHEAARVAVECTRLKGEERPRMIE 373

Putative serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: -

>sp|Q9LMN7|WAK5_ARATH Wall-associated receptor kinase 5 OS=Arabidopsis thaliana GN=WAK5 PE=2 SV=1

 Score =  128 bits (322), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 79/230 (34%), Positives = 127/230 (55%), Gaps = 15/230 (6%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLP-------RLK 69
           IN +   +Q++H +++K +GCCL+T +P+LV++ +  GTL D + G+          RL+
Sbjct: 450 INEVLVLSQINHRNVVKLLGCCLETEVPLLVYEFISSGTLFDHLHGSMFDSSLTWEHRLR 509

Query: 70  IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR 129
           IA ++  +LAYLH     PI+ R+ KT NIL +E   AK  DF  S  IP  +  +TT  
Sbjct: 510 IAIEVAGTLAYLHSYASIPIIHRDVKTANILLDENLTAKVADFGASRLIPMDQEQLTT-M 568

Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLK 189
           V GT GY  PEY +  +LNEKS+V+SFG  L ELL+G   +      +  H      Y  
Sbjct: 569 VQGTLGYLDPEYYNTGLLNEKSDVYSFGVVLMELLSGEKALCFERPQSSKH---LVSYFV 625

Query: 190 NYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM 239
           + +++ R   I    ++ +      ++++  SA++ +EC     E+RP+M
Sbjct: 626 SAMKENRLHEIIDGQVMNEY----NQREIQESARIAVECTRIMGEERPSM 671

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. Binding to pectin may have significance in the control of cell expansion, morphogenesis and development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9LMN6|WAK4_ARATH Wall-associated receptor kinase 4 OS=Arabidopsis thaliana GN=WAK4 PE=2 SV=1

 Score =  127 bits (320), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 126/230 (54%), Gaps = 15/230 (6%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLP-------RLK 69
           IN +   +Q++H +++K +GCCL+T +P+LV++ +  GTL D + G+          RL+
Sbjct: 452 INEVLVLSQINHRNVVKLLGCCLETEVPLLVYEFISSGTLFDHLHGSMFDSSLTWEHRLR 511

Query: 70  IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR 129
           +A +I  +LAYLH     PI+ R+ KT NIL +E   AK  DF  S  IP  +  + T  
Sbjct: 512 MAVEIAGTLAYLHSSASIPIIHRDIKTANILLDENLTAKVADFGASRLIPMDKEDLAT-M 570

Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLK 189
           V GT GY  PEY +  +LNEKS+V+SFG  L ELL+G+  +      T  H      Y  
Sbjct: 571 VQGTLGYLDPEYYNTGLLNEKSDVYSFGVVLMELLSGQKALCFERPQTSKH---IVSYFA 627

Query: 190 NYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM 239
           +  ++ R   I    ++ +      ++++  +A++ +EC   + E+RP M
Sbjct: 628 SATKENRLHEIIDGQVMNE----NNQREIQKAARIAVECTRLTGEERPGM 673

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. Binding to pectin may have significance in the control of cell expansion, morphogenesis and development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9LMN8|WAK3_ARATH Wall-associated receptor kinase 3 OS=Arabidopsis thaliana GN=WAK3 PE=2 SV=2

 Score =  125 bits (313), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 80/230 (34%), Positives = 125/230 (54%), Gaps = 15/230 (6%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRD----CIFGAPLP---RLK 69
           I+ +   +Q++H +++K +GCCL+T +P+LV++ +  GTL D     IF + L    RL+
Sbjct: 457 IHEVLVLSQINHRNVVKILGCCLETEVPLLVYEFITNGTLFDHLHGSIFDSSLTWEHRLR 516

Query: 70  IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR 129
           IA ++  +LAYLH     PI+ R+ KT NIL +E   AK  DF  S  IP  +  +TT  
Sbjct: 517 IAIEVAGTLAYLHSSASIPIIHRDIKTANILLDENLTAKVADFGASKLIPMDKEQLTT-M 575

Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLK 189
           V GT GY  PEY +  +LNEKS+V+SFG  L ELL+G+  +         H      Y  
Sbjct: 576 VQGTLGYLDPEYYTTGLLNEKSDVYSFGVVLMELLSGQKALCFERPQASKH---LVSYFV 632

Query: 190 NYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM 239
           +  E+ R   I    ++ +    +  +++  +A++  EC     E+RP M
Sbjct: 633 SATEENRLHEIIDDQVLNE----DNLKEIQEAARIAAECTRLMGEERPRM 678

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. Binding to pectin may have significance in the control of cell expansion, morphogenesis and development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q39191|WAK1_ARATH Wall-associated receptor kinase 1 OS=Arabidopsis thaliana GN=WAK1 PE=1 SV=2

 Score =  124 bits (310), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 77/230 (33%), Positives = 123/230 (53%), Gaps = 15/230 (6%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLP-------RLK 69
           IN +   +Q++H +++K +GCCL+T +P+LV++ +  GTL D + G+ +        RLK
Sbjct: 451 INEVLVLSQINHRNVVKLLGCCLETEVPLLVYEFITNGTLFDHLHGSMIDSSLTWEHRLK 510

Query: 70  IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR 129
           IA ++  +LAYLH     PI+ R+ KT NIL +    AK  DF  S  IP  +  + T  
Sbjct: 511 IAIEVAGTLAYLHSSASIPIIHRDIKTANILLDVNLTAKVADFGASRLIPMDKEELET-M 569

Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLK 189
           V GT GY  PEY +  +LNEKS+V+SFG  L ELL+G+  +      +  H      Y  
Sbjct: 570 VQGTLGYLDPEYYNTGLLNEKSDVYSFGVVLMELLSGQKALCFKRPQSSKH---LVSYFA 626

Query: 190 NYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM 239
              ++ R   I    ++ +    +  +++  +A++  EC     E+RP M
Sbjct: 627 TATKENRLDEIIGGEVMNE----DNLKEIQEAARIAAECTRLMGEERPRM 672

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. Binding to pectin may have significance in the control of cell expansion, morphogenesis and development. Required during plant's response to pathogen infection and in plant defense against heavy metal toxicity. Phosphorylates the oxygen-evolving enhancer protein 2 (OEE2) in an GRP-3-dependent manner.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9LMP1|WAK2_ARATH Wall-associated receptor kinase 2 OS=Arabidopsis thaliana GN=WAK2 PE=1 SV=1

 Score =  124 bits (310), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 80/238 (33%), Positives = 128/238 (53%), Gaps = 31/238 (13%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLP-------RLK 69
           IN +   +Q++H +++K +GCCL+T +P+LV++ +  GTL D + G+          RL+
Sbjct: 446 INEVLVLSQINHRNVVKVLGCCLETEVPLLVYEFINSGTLFDHLHGSLYDSSLTWEHRLR 505

Query: 70  IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR 129
           IA+++  SLAYLH     PI+ R+ KT NIL ++   AK  DF  S  IP  +  +TT  
Sbjct: 506 IATEVAGSLAYLHSSASIPIIHRDIKTANILLDKNLTAKVADFGASRLIPMDKEQLTTI- 564

Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLK 189
           V GT GY  PEY +  +LNEKS+V+SFG  L ELL+G+  +           CF   +  
Sbjct: 565 VQGTLGYLDPEYYNTGLLNEKSDVYSFGVVLMELLSGQKAL-----------CFERPHCP 613

Query: 190 NYL--------EDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM 239
             L        ++ RF  I    ++ +    + ++++  +A++  EC     E+RP M
Sbjct: 614 KNLVSCFASATKNNRFHEIIDGQVMNE----DNQREIQEAARIAAECTRLMGEERPRM 667

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. Binding to pectin may have significance in the control of cell expansion, morphogenesis and development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9M092|WAKLM_ARATH Wall-associated receptor kinase-like 17 OS=Arabidopsis thaliana GN=WAKL17 PE=3 SV=2

 Score =  123 bits (309), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/234 (34%), Positives = 127/234 (54%), Gaps = 21/234 (8%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTL-----------RDCIFGAPL 65
           IN +   +Q++H H++K +GCCL+T +PILV++ +  G L              I+G   
Sbjct: 486 INEVVILSQINHRHVVKLLGCCLETEVPILVYEFIINGNLFKHIHEEEADDYTMIWGM-- 543

Query: 66  PRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHI 125
            RL+IA DI  +L+YLH     PI  R+ K+ NIL +E+  AK  DF  S S+   +TH 
Sbjct: 544 -RLRIAVDIAGALSYLHSAASSPIYHRDIKSTNILLDEKYRAKVADFGTSRSVTIDQTHW 602

Query: 126 TTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFN 185
           TT  + GT GY  PEY       EKS+V+SFG  L EL+ G   +  ++++T +      
Sbjct: 603 TT-VISGTVGYVDPEYYRSSQYTEKSDVYSFGVILAELITGDKPVI-MVQNTQEI-IALA 659

Query: 186 EYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM 239
           E+ +  ++++R + I    I  D     K +Q+ A A L ++C+++   +RP M
Sbjct: 660 EHFRVAMKERRLSDIMDARIRDD----SKPEQVMAVANLAMKCLSSRGRNRPNM 709

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q0WNY5|WAKLN_ARATH Wall-associated receptor kinase-like 18 OS=Arabidopsis thaliana GN=WAKL18 PE=2 SV=1

 Score =  123 bits (308), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/231 (34%), Positives = 126/231 (54%), Gaps = 15/231 (6%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLP--------RL 68
           IN +   +Q++H H++K +GCCL+T +P+LV++ +  G L   I              RL
Sbjct: 495 INEVVILSQINHRHVVKLLGCCLETEVPMLVYEFIINGNLFKHIHEEESDDYTMLWGMRL 554

Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTD 128
           +IA DI  +L+YLH     PI  R+ K+ NIL +E+  AK  DF  S S+   +TH TT 
Sbjct: 555 RIAVDIAGALSYLHSSASSPIYHRDIKSTNILLDEKYRAKVADFGTSRSVTIDQTHWTT- 613

Query: 129 RVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYL 188
            + GT GY  PEY       EKS+V+SFG  L EL+ G   +  ++++T +      E+ 
Sbjct: 614 VISGTVGYVDPEYYQSSQYTEKSDVYSFGVILAELITGDKPVI-MVQNTQEI-VALAEHF 671

Query: 189 KNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM 239
           +  +++KR T I    I  D     K +Q+ A A++ ++C+++  + RP M
Sbjct: 672 RVAMKEKRLTDIIDARIRNDC----KPEQVMAVAKVAMKCLSSKGKKRPNM 718

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9LFP7|Y5158_ARATH Probable receptor-like protein kinase At5g15080 OS=Arabidopsis thaliana GN=At5g15080 PE=1 SV=1

 Score =  121 bits (304), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 79/229 (34%), Positives = 128/229 (55%), Gaps = 15/229 (6%)

Query: 20  ITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLP-----RLKIASDI 74
           I +   + H +++K +G C++    +LV++ +  G+L + +F   LP     R+KIA   
Sbjct: 197 INFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGA 256

Query: 75  VNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIP-EGETHITTDRVIGT 133
              L++LH    +P++ R+FKT NIL + +  AK  DF L+   P EG+TH++T RV+GT
Sbjct: 257 AKGLSFLHEEALKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPDEGKTHVST-RVMGT 315

Query: 134 RGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLE 193
            GY+APEY+    L  KS+V+SFG  L E+L GR  + D  +   +H     E+ + +L 
Sbjct: 316 YGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSM-DKNRPNGEHNLV--EWARPHLL 372

Query: 194 DK-RFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD 241
           DK RF  +  P +      I+  Q++    QL  +C++  P+ RP M D
Sbjct: 373 DKRRFYRLLDPRLEGHF-SIKGAQKV---TQLAAQCLSRDPKIRPKMSD 417

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O80795|Y1652_ARATH Probable inactive receptor-like protein kinase At1g65250 OS=Arabidopsis thaliana GN=At1g65250 PE=2 SV=1

 Score =  121 bits (303), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 77/236 (32%), Positives = 126/236 (53%), Gaps = 14/236 (5%)

Query: 19  NITYAAQMS-HNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDIVNS 77
           +I  ++ +S H + +K +GCCL+   P++V+ SV+     +        R+KIA DI  +
Sbjct: 98  DIAVSSMVSGHKNFMKLVGCCLELDYPVMVYHSVKKHYKLEISEQPWKKRMKIAEDIATA 157

Query: 78  LAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYS 137
           LAYLH  FPRP V R     NIL +E+ VAK  DF   +SIPEGET +  DR +G   Y 
Sbjct: 158 LAYLHTAFPRPFVYRILSHWNILLDEDGVAKLTDFSHCVSIPEGETFVRVDRDVGLYSYF 217

Query: 138 APEYISICVLNEKSNVFSFGAFL-FELLAGRIHIWDLLKDTHDHG-----CFFNEYLKNY 191
           A  Y+   ++++K++VF+FG F+   LL G  + ++  +   +            + +N 
Sbjct: 218 ADNYVRSGLVSDKTDVFAFGIFMGHRLLLGYEYYFEHYRGEEEESEDGFDSLMKRHARNL 277

Query: 192 L----EDKRFTGIPAPIIVQDIPCIEKEQ--QLHASAQLTLECVNNSPEDRPTMVD 241
           L    ED+    I    +++ +  I +++  Q+ A  +L+L C   S E+ PTMV+
Sbjct: 278 LSTLKEDRPMEEIADSKMIEKMGQISEQERCQMKAFLKLSLRCTGPS-EEVPTMVE 332

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
255582635	331	receptor protein kinase, putative [Ricin	0.941	0.685	0.422	1e-43
224123144	344	predicted protein [Populus trichocarpa]	0.941	0.659	0.414	2e-43
255542656	331	serine-threonine protein kinase, plant-t	0.954	0.694	0.421	4e-41
255542668	307	serine-threonine protein kinase, plant-t	0.921	0.723	0.422	3e-40
255542658	356	serine-threonine protein kinase, plant-t	0.929	0.629	0.424	8e-39
255542662	330	serine-threonine protein kinase, plant-t	0.929	0.678	0.406	7e-38
224065631	323	predicted protein [Populus trichocarpa]	0.896	0.668	0.406	8e-34
359495254	331	PREDICTED: wall-associated receptor kina	0.912	0.664	0.407	2e-33
297740943	321	unnamed protein product [Vitis vinifera]	0.912	0.685	0.407	3e-33
255542676	247	serine-threonine protein kinase, plant-t	0.622	0.607	0.519	2e-32

>gi|255582635|ref|XP_002532098.1| receptor protein kinase, putative [Ricinus communis] gi|223528232|gb|EEF30288.1| receptor protein kinase, putative [Ricinus communis]

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 101/239 (42%), Positives = 141/239 (58%), Gaps = 12/239 (5%)

Query: 13  YGSCINNITYAAQMS-HNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFG------APL 65
           Y  C N+I +A QMS H + LK +GCCL+T IP+LVF+ +EYGTL   ++G       PL
Sbjct: 85  YKYCYNDIMFATQMSKHKNFLKLLGCCLETQIPVLVFEPIEYGTLAGRLYGPNKTLYQPL 144

Query: 66  ---PRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGE 122
               RLKIA +I N+++YLH  F RPIV RN K  NI  +E +VAK  DF L++SIPEGE
Sbjct: 145 LWRHRLKIAVEIANAVSYLHTAFSRPIVFRNIKPLNIFLDECHVAKLSDFSLAVSIPEGE 204

Query: 123 THITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGC 182
           +H+  D + G  G  APEY      NE  +V++FG FL  LL G+  + D  +       
Sbjct: 205 SHV-KDMLAGAWGLIAPEYAKTSCFNESQDVYNFGVFLLMLLTGQ-KVVDSYRPQAGEEL 262

Query: 183 FFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD 241
              +++K ++ D RF      II+ +    EK+QQL A   L+  C++ + EDRP M+D
Sbjct: 263 GLVDHVKKFIADDRFYETVDSIILGEGSLPEKDQQLQAFTLLSFRCISEADEDRPMMID 321

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123144|ref|XP_002319005.1| predicted protein [Populus trichocarpa] gi|222857381|gb|EEE94928.1| predicted protein [Populus trichocarpa]

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 100/241 (41%), Positives = 144/241 (59%), Gaps = 14/241 (5%)

Query: 11  HTYGSCINNITYAAQMS-HNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----- 64
             Y  C N+I YA++MS H   +K +GCCL+  IPILVF+ V   TL D ++G+      
Sbjct: 90  EQYEYCFNDIVYASKMSVHKSFMKLLGCCLEARIPILVFEYVGDWTLSDFLWGSEEARCQ 149

Query: 65  ----LPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPE 120
               +PR KIA D+ N++A+LH  F +PIV RN K  NIL ++ + AK  DF +SISIP+
Sbjct: 150 PLLWIPRSKIAMDMANAVAFLHAAFSKPIVFRNIKPLNILLDDNHEAKLSDFSISISIPK 209

Query: 121 GETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDH 180
           GE+H+  D V G  G  APEY++    NEK +VF+FG FL  LL+G++ + D  +   + 
Sbjct: 210 GESHV-RDSVAGATGLIAPEYLTTGNFNEKQDVFNFGVFLLVLLSGQMVV-DFSRPEKE- 266

Query: 181 GCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV 240
                +++K  +ED RF  +    I+ +     KEQQL A   L+L C++   EDRPTM+
Sbjct: 267 -ILLQDHVKKCIEDDRFNKVIDSTIIAEGTWPGKEQQLQAYTALSLRCISELAEDRPTMI 325

Query: 241 D 241
           D
Sbjct: 326 D 326

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542656|ref|XP_002512391.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223548352|gb|EEF49843.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  174 bits (440), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 100/237 (42%), Positives = 138/237 (58%), Gaps = 7/237 (2%)

Query: 9   HRHTYGSCINNITYAAQMS-HNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL-- 65
           ++H     +++I  A++MS H ++LK +GCCL++ IPI VF+  E GTL D +    L  
Sbjct: 82  YKHPSEDPVSDIVIASEMSVHRNVLKLLGCCLESEIPIPVFEYAEKGTLEDYVQKTALLW 141

Query: 66  -PRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH 124
             RLKIA D+ + +AYLH  FPRPIV R+    +IL +E+  AK   F LSISIPEGETH
Sbjct: 142 KDRLKIAVDVASVIAYLHTAFPRPIVHRDISLASILLDEDCAAKVTGFSLSISIPEGETH 201

Query: 125 ITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFF 184
           I  D V GT GY APEY    + NEK +V+SFG  L  LL G   I         H    
Sbjct: 202 I-EDEVAGTIGYVAPEYFMKRMFNEKIDVYSFGVVLLVLLTGHGPILRSPTTNESHALVV 260

Query: 185 NEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD 241
             +++  ++++RF  I  P I+++ P  EKEQQL +   L ++C     EDRP + D
Sbjct: 261 --FVEAKIKNERFNEIIDPAILEEGPWPEKEQQLKSFLTLAMQCTRKDEEDRPEITD 315

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542668|ref|XP_002512397.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223548358|gb|EEF49849.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 98/232 (42%), Positives = 141/232 (60%), Gaps = 10/232 (4%)

Query: 17  INNITYAAQMS-HNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLP------RLK 69
           IN+I +A++MS H ++LK +GCCL++ IPILVF+  + G L+D  +           RL+
Sbjct: 63  INDIVFASEMSVHKNVLKLLGCCLESKIPILVFECAQKGILKDYFYKTDSASLLWQIRLR 122

Query: 70  IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR 129
           IA D+ + ++YLH  FPRPIV R+    NIL +E+ +AK   F LS+SIPEG+THI  D 
Sbjct: 123 IAVDVASVISYLHSAFPRPIVHRDITLSNILLDEDYIAKVTGFSLSMSIPEGKTHI-EDE 181

Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLK 189
           V+GT GY AP Y    + NEK +V+SFG  L  LL G+  I  L   T         ++K
Sbjct: 182 VVGTPGYLAPAYFKTLMFNEKIDVYSFGVLLLVLLTGQQPI--LHSPTTTARYSLVNFVK 239

Query: 190 NYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD 241
             +ED+RF  I  P+I+++ P  EKE+QL     L ++C + + EDRP + D
Sbjct: 240 EKIEDERFDEIIDPVILEEGPWPEKERQLEIFLTLAMQCTHENEEDRPEITD 291

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542658|ref|XP_002512392.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223548353|gb|EEF49844.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  166 bits (420), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 107/252 (42%), Positives = 146/252 (57%), Gaps = 28/252 (11%)

Query: 17  INNITYAAQMS-HNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA------PL---P 66
           IN+I +A++MS H ++LK +GCCL++ IPILVF+  E G L+D I+        PL    
Sbjct: 93  INDIVFASEMSRHKNVLKLLGCCLESEIPILVFEYAEKGKLQDYIYKTDSASFRPLLWKS 152

Query: 67  RLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHIT 126
           RLKIA D  N +AYLH   PRP+V R+    NI  +E+ VAK  DF +S+SI EGETHI 
Sbjct: 153 RLKIAVDAANVIAYLHTACPRPVVHRDITLSNIWLDEDYVAKVTDFTVSMSILEGETHI- 211

Query: 127 TDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHI---WD-LLKDTH---- 178
            D V+GT GY+APEY+   + NEK +VFSFG  L  LL  +      W+ +LKD      
Sbjct: 212 EDFVLGTCGYAAPEYVRSGIFNEKIDVFSFGVLLLVLLTDQKPFQGNWENILKDARFDEI 271

Query: 179 ------DHGCFF-NEYLKNYLEDKR--FTGIPAPIIVQDIPCIEKEQQLHASAQLTLECV 229
                 + G +   E L+ +L   R        PIIV++ P  EKEQQL A   L ++C+
Sbjct: 272 IGSLIVEKGLWSEKEQLETFLTRTRQKLDLTIDPIIVEEGPWPEKEQQLKAFLMLGVQCI 331

Query: 230 NNSPEDRPTMVD 241
           +   E+RP + D
Sbjct: 332 DPDEENRPEITD 343

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542662|ref|XP_002512394.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223548355|gb|EEF49846.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  163 bits (412), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 96/236 (40%), Positives = 135/236 (57%), Gaps = 12/236 (5%)

Query: 16  CINNITYAAQMS-HNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFG------APLP-- 66
            IN I YA+ MS H + +K +GCCL+TP PILVF+S +  TL D I         P+   
Sbjct: 82  AINEIVYASAMSVHINSIKLLGCCLETPSPILVFESAKEKTLADRIIDRNDDHFEPVKWK 141

Query: 67  -RLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHI 125
            RLKI +DI N + Y+H  FPRPIV RN K  NIL +E+ VAK  DF L +SIPEG++ +
Sbjct: 142 LRLKIVADIANVVVYIHTAFPRPIVHRNIKASNILLDEDYVAKLSDFSLCVSIPEGKSRV 201

Query: 126 TTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFN 185
             D + GT G  A E ++    NEKS+V+SFG  L  +L G+   +D  +          
Sbjct: 202 -RDIMAGTMGLIASESLATGYFNEKSDVYSFGVVLLVVLTGQ-RSFDFSRTETGEQFLLV 259

Query: 186 EYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD 241
            ++K ++E   F  +  PIIV +     K Q+L     L L C+++S E+RPTM++
Sbjct: 260 NHVKKHIETGGFKEMVDPIIVAEEAGNRKGQELEDFRDLALRCIHDSAEERPTMIE 315

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065631|ref|XP_002301893.1| predicted protein [Populus trichocarpa] gi|222843619|gb|EEE81166.1| predicted protein [Populus trichocarpa]

 Score =  149 bits (377), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 93/229 (40%), Positives = 129/229 (56%), Gaps = 13/229 (5%)

Query: 18  NNITYAAQMS-HNHILKRIGCCLQTPI-PILVFQSVEYGTLRDCIFGAPLP---RLKIAS 72
            +I  ++QMS HN++LK +GCCL+ P  P LV++  E  +L   I    LP   RLKIA 
Sbjct: 87  RDIVVSSQMSSHNNVLKLLGCCLEIPEGPALVYEYPENRSLDRHIHYGSLPWGTRLKIAK 146

Query: 73  DIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIG 132
           +I N++AYLH  FPRPI+ R+ K  NI  N+   AK  DF  SISIPEGE+ +  D ++G
Sbjct: 147 EIANAVAYLHTAFPRPIIHRDIKPANIFLNQNYAAKLSDFSFSISIPEGESKVGDDLLVG 206

Query: 133 TRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYL 192
           T G+  P+Y     + EK++VFSFG  L  LL GR         T        E++K  +
Sbjct: 207 TFGFLDPDYTMTNFVTEKTDVFSFGVLLLVLLTGRA--------TRQGEIHLIEHVKLLV 258

Query: 193 EDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD 241
           E  R      P+I  +      +QQL AS +L L C ++S EDRP M++
Sbjct: 259 EQDRVHEAVDPMIRGNGGEAIDQQQLEASIELALRCTDDSGEDRPLMIE 307

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495254|ref|XP_002271826.2| PREDICTED: wall-associated receptor kinase-like 8-like [Vitis vinifera]

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/233 (40%), Positives = 130/233 (55%), Gaps = 13/233 (5%)

Query: 16  CINNITYAAQMS-HNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLP-----RLK 69
            IN I  A+QMS H + LK +GCCL+T IPILV++    G+L D IF  P P     RL+
Sbjct: 90  AINEIVIASQMSAHKNALKLLGCCLETRIPILVYEFPSGGSLIDRIFSPPNPLSWKSRLR 149

Query: 70  IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR 129
           IA DI N +AYLH  FPR I+  + K  +   +++  AK  DF LSI++PEGE H+  D 
Sbjct: 150 IAYDIANVIAYLHIAFPRSIIHTDIKPSSFFLDQDCAAKLSDFSLSITLPEGEMHV-EDE 208

Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG-RIHIWDLLKDTHDHGCFFNEYL 188
           + GT GY APE +   V  EK++VFSFG  L ELL G R H        H+      +Y 
Sbjct: 209 IRGTFGYLAPETLISGVYTEKNDVFSFGILLLELLIGKRAH-----SIMHEERASIQDYA 263

Query: 189 KNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD 241
           ++++      GI  PII+     I +E Q  A   L + C     ++RPT+V+
Sbjct: 264 QSFVNTYDINGIVDPIILAQPRGIHEELQFQAIFDLAMRCSMKDMDERPTIVN 316

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740943|emb|CBI31255.3| unnamed protein product [Vitis vinifera]

 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 95/233 (40%), Positives = 130/233 (55%), Gaps = 13/233 (5%)

Query: 16  CINNITYAAQMS-HNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLP-----RLK 69
            IN I  A+QMS H + LK +GCCL+T IPILV++    G+L D IF  P P     RL+
Sbjct: 82  AINEIVIASQMSAHKNALKLLGCCLETRIPILVYEFPSGGSLIDRIFSPPNPLSWKSRLR 141

Query: 70  IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR 129
           IA DI N +AYLH  FPR I+  + K  +   +++  AK  DF LSI++PEGE H+  D 
Sbjct: 142 IAYDIANVIAYLHIAFPRSIIHTDIKPSSFFLDQDCAAKLSDFSLSITLPEGEMHV-EDE 200

Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG-RIHIWDLLKDTHDHGCFFNEYL 188
           + GT GY APE +   V  EK++VFSFG  L ELL G R H        H+      +Y 
Sbjct: 201 IRGTFGYLAPETLISGVYTEKNDVFSFGILLLELLIGKRAH-----SIMHEERASIQDYA 255

Query: 189 KNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD 241
           ++++      GI  PII+     I +E Q  A   L + C     ++RPT+V+
Sbjct: 256 QSFVNTYDINGIVDPIILAQPRGIHEELQFQAIFDLAMRCSMKDMDERPTIVN 308

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542676|ref|XP_002512401.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223548362|gb|EEF49853.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 81/156 (51%), Positives = 105/156 (67%), Gaps = 6/156 (3%)

Query: 17  INNITYAAQMS-HNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLP----RLKIA 71
           IN+I +A++MS H ++LK +GCCL++ IPILVF+  E G L D I+         RLKIA
Sbjct: 85  INDIVFASEMSRHKNVLKLLGCCLESEIPILVFEYAEKGNLHDYIYKTDSASFRRRLKIA 144

Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
            D  N +AYLH  FPRP+V R+    N+  +E++VAK  DF LS+SIPEGETHI  D V+
Sbjct: 145 VDAANVIAYLHTAFPRPVVHRHITLSNVWLDEDSVAKVTDFSLSMSIPEGETHI-EDFVM 203

Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           GT GY+APEY    + NEK +VFSFG  L  LL G+
Sbjct: 204 GTCGYAAPEYARSGIFNEKIDVFSFGVLLLVLLTGQ 239

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
TAIR|locus:2076671	355	AT3G57730 [Arabidopsis thalian	0.904	0.614	0.353	3.3e-31
TAIR|locus:2076681	359	AT3G57720 [Arabidopsis thalian	0.970	0.651	0.330	5.4e-31
TAIR|locus:2094468	433	AT3G25490 [Arabidopsis thalian	0.900	0.501	0.336	4.9e-30
TAIR|locus:2076586	351	AT3G57710 [Arabidopsis thalian	0.941	0.646	0.327	2.1e-29
TAIR|locus:2014912	732	WAK2 "wall-associated kinase 2	0.883	0.290	0.344	2.1e-28
TAIR|locus:2014962	733	WAK5 "wall associated kinase 5	0.892	0.293	0.343	3.9e-28
TAIR|locus:2014952	738	WAK4 "wall associated kinase 4	0.892	0.291	0.339	1.4e-27
TAIR|locus:2206235	372	AT1G65250 [Arabidopsis thalian	0.917	0.594	0.333	2.2e-27
TAIR|locus:2147805	493	AT5G15080 [Arabidopsis thalian	0.887	0.434	0.349	3e-27
TAIR|locus:2057770	424	ARSK1 "root-specific kinase 1"	0.946	0.537	0.333	3.5e-27

TAIR|locus:2076671 AT3G57730 [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 82/232 (35%), Positives = 128/232 (55%)

Query:    19 NITYAAQMS-HNHILKRIGCCLQTPIPILVFQSVEYGTLRD----CIFGAP--LP---RL 68
             +I  +A+MS HN+ LK +GCCL+ P P+LVF+  E+G L       + G    LP   RL
Sbjct:   112 DIVLSARMSNHNNFLKLLGCCLEFPFPVLVFEFAEHGVLNYRGGITVNGEESLLPLSLRL 171

Query:    69 KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTD 128
             KI  +I N+LAYLH  FP+ I+ R+ K  ++  +    AK  D   SIS+ EG++ I  +
Sbjct:   172 KIGKEIANALAYLHMAFPKIIIYRDVKPLHVFLDNNWTAKLSDLSFSISLEEGKSQIEAE 231

Query:   129 RVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYL 188
              V+GT GY  P Y +  ++ E ++V+SFG FL  ++ G I ++    D +  G     Y+
Sbjct:   232 DVLGTYGYLDPLYFATRIVTEYTDVYSFGVFLMVVITG-ISVYFTGSDGYPVGIL--GYM 288

Query:   189 KNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV 240
             K   E+ +   I  P+I++++   ++  Q+ A   L L C     EDRP M+
Sbjct:   289 KGLAENGKLNEIVYPMIMKEMTSAQR-LQVEACVLLALRCCEERVEDRPKMI 339

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2076681 AT3G57720 [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 83/251 (33%), Positives = 135/251 (53%)

Query:     2 KFYGHEYHRHTYGSCINNITYAAQMS-HNHILKRIGCCLQTPIPILVFQSVEYGTLRD-- 58
             +F  ++  ++      N I  +A+MS HN+ LK IG CL+  +P+LVF+  E+G L    
Sbjct:    98 RFSEYKVTQYRVAEVYNEIVLSARMSNHNNFLKLIGFCLEFSLPVLVFEYAEHGVLNHRG 157

Query:    59 --CIFGAP--LP---RLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFD 111
                + G    LP   RLKI  +I N++ YLH  FP+ ++ R+ K +N+  +E    K  D
Sbjct:   158 GVIVNGEEVILPLSLRLKIGKEIANAVTYLHMAFPKILIHRHIKPRNVFLDENWTPKLSD 217

Query:   112 FLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIW 171
             F +SI++PEG++ I  + V GT GY  P Y +  ++ E ++V+SFG FL  +L G+    
Sbjct:   218 FSISINLPEGKSRIEVECVQGTIGYLDPVYYTTKMVTEYTDVYSFGVFLMVILTGK---- 273

Query:   172 DLLKDTHDHGCFFN--EYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECV 229
               L  T   G + +   Y+K + E+ +  G+  P +++DI   +K   + A   L L C 
Sbjct:   274 PALASTSSDGDYKHIASYVKGFHENGQLDGVIDPKVMEDITSAQKVH-VEACVVLALRCC 332

Query:   230 NNSPEDRPTMV 240
                 E+RP M+
Sbjct:   333 ELRDENRPKMI 343

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2094468 AT3G25490 [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 78/232 (33%), Positives = 131/232 (56%)

Query:    17 INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLP-------RLK 69
             IN +   +Q++H +++K +GCCL+T +P+LV++ +  G+L D + G+          RL+
Sbjct:   150 INEVLVLSQINHRNVVKLLGCCLETEVPLLVYEFITGGSLFDHLHGSMFVSSLTWEHRLE 209

Query:    70 IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR 129
             IA ++  ++AYLH G   PI+ R+ KT+NIL +E   AK  DF  S   P  +  +TT  
Sbjct:   210 IAIEVAGAIAYLHSGASIPIIHRDIKTENILLDENLTAKVADFGASKLKPMDKEQLTT-M 268

Query:   130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLK 189
             V GT GY  PEY +  +LNEKS+V+SFG  L EL++G+  +     +T  H      Y  
Sbjct:   269 VQGTLGYLDPEYYTTWLLNEKSDVYSFGVVLMELISGQKALCFERPETSKH---LVSYFV 325

Query:   190 NYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD 241
                ++ R   I    ++ +    E ++++H +A++ +EC     E+RP M++
Sbjct:   326 LATKENRLHEIIDDQVLNE----ENQREIHEAARVAVECTRLKGEERPRMIE 373

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2076586 AT3G57710 [Arabidopsis thaliana (taxid:3702)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 79/241 (32%), Positives = 127/241 (52%)

Query:    10 RHTYGSCINNITYAAQMS-HNHILKRIGCCLQTPIPILVFQSVEYGTLRD----CIFGAP 64
             RH      N+I  +A+MS H++ L+ +GCCL+ P P+LVF+  E+G +       + G  
Sbjct:    98 RHRVKEVYNDIVLSARMSNHSNFLQLLGCCLEFPFPVLVFEFAEHGAMNQRGGVIVNGEE 157

Query:    65 --LP---RLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIP 119
               LP   RLKI  +I N++ YLH  FP+ I+ R+ K  ++  ++   AK  D   SIS+P
Sbjct:   158 SLLPWSVRLKIGKEIANAVTYLHTAFPKIIIHRDVKPMHVFLDKNWTAKLSDLSFSISLP 217

Query:   120 EGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHD 179
             EG++ I  + V+GT GY  P Y   C + E ++V+SFG  L  ++ G+  I  +  D   
Sbjct:   218 EGKSRIEAEWVLGTFGYIDPLYHKTCFVTEYTDVYSFGICLLVIITGKPAIMTI-SDGDL 276

Query:   180 HGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM 239
              G      ++   E+ +   +  P +++DI   ++  Q+ A   L L C     EDRP M
Sbjct:   277 QGIL--SLVRELCENGKLDEVIDPRLMKDITSGQR-LQVEACVVLALRCCKERDEDRPKM 333

Query:   240 V 240
             +
Sbjct:   334 I 334

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2014912 WAK2 "wall-associated kinase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 2.1e-28, Sum P(2) = 2.1e-28
 Identities = 80/232 (34%), Positives = 129/232 (55%)

Query:    17 INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLP-------RLK 69
             IN +   +Q++H +++K +GCCL+T +P+LV++ +  GTL D + G+          RL+
Sbjct:   446 INEVLVLSQINHRNVVKVLGCCLETEVPLLVYEFINSGTLFDHLHGSLYDSSLTWEHRLR 505

Query:    70 IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR 129
             IA+++  SLAYLH     PI+ R+ KT NIL ++   AK  DF  S  IP  +  +TT  
Sbjct:   506 IATEVAGSLAYLHSSASIPIIHRDIKTANILLDKNLTAKVADFGASRLIPMDKEQLTTI- 564

Query:   130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFN--EY 187
             V GT GY  PEY +  +LNEKS+V+SFG  L ELL+G+  +    +  H   C  N    
Sbjct:   565 VQGTLGYLDPEYYNTGLLNEKSDVYSFGVVLMELLSGQKAL--CFERPH---CPKNLVSC 619

Query:   188 LKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM 239
               +  ++ RF  I    ++ +    + ++++  +A++  EC     E+RP M
Sbjct:   620 FASATKNNRFHEIIDGQVMNE----DNQREIQEAARIAAECTRLMGEERPRM 667

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009751 "response to salicylic acid stimulus" evidence=IDA

GO:0009311 "oligosaccharide metabolic process" evidence=IMP

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0009992 "cellular water homeostasis" evidence=IMP;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2014962 WAK5 "wall associated kinase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 79/230 (34%), Positives = 127/230 (55%)

Query:    17 INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLP-------RLK 69
             IN +   +Q++H +++K +GCCL+T +P+LV++ +  GTL D + G+          RL+
Sbjct:   450 INEVLVLSQINHRNVVKLLGCCLETEVPLLVYEFISSGTLFDHLHGSMFDSSLTWEHRLR 509

Query:    70 IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR 129
             IA ++  +LAYLH     PI+ R+ KT NIL +E   AK  DF  S  IP  +  +TT  
Sbjct:   510 IAIEVAGTLAYLHSYASIPIIHRDVKTANILLDENLTAKVADFGASRLIPMDQEQLTT-M 568

Query:   130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLK 189
             V GT GY  PEY +  +LNEKS+V+SFG  L ELL+G   +      +  H      Y  
Sbjct:   569 VQGTLGYLDPEYYNTGLLNEKSDVYSFGVVLMELLSGEKALCFERPQSSKH---LVSYFV 625

Query:   190 NYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM 239
             + +++ R   I    ++ +      ++++  SA++ +EC     E+RP+M
Sbjct:   626 SAMKENRLHEIIDGQVMNEY----NQREIQESARIAVECTRIMGEERPSM 671

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2014952 WAK4 "wall associated kinase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 1.4e-27, P = 1.4e-27
 Identities = 78/230 (33%), Positives = 126/230 (54%)

Query:    17 INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLP-------RLK 69
             IN +   +Q++H +++K +GCCL+T +P+LV++ +  GTL D + G+          RL+
Sbjct:   452 INEVLVLSQINHRNVVKLLGCCLETEVPLLVYEFISSGTLFDHLHGSMFDSSLTWEHRLR 511

Query:    70 IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR 129
             +A +I  +LAYLH     PI+ R+ KT NIL +E   AK  DF  S  IP  +  + T  
Sbjct:   512 MAVEIAGTLAYLHSSASIPIIHRDIKTANILLDENLTAKVADFGASRLIPMDKEDLAT-M 570

Query:   130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLK 189
             V GT GY  PEY +  +LNEKS+V+SFG  L ELL+G+  +      T  H      Y  
Sbjct:   571 VQGTLGYLDPEYYNTGLLNEKSDVYSFGVVLMELLSGQKALCFERPQTSKH---IVSYFA 627

Query:   190 NYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM 239
             +  ++ R   I    ++ +      ++++  +A++ +EC   + E+RP M
Sbjct:   628 SATKENRLHEIIDGQVMNE----NNQREIQKAARIAVECTRLTGEERPGM 673

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0048527 "lateral root development" evidence=RCA;IMP

GO:0048589 "developmental growth" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

TAIR|locus:2206235 AT1G65250 [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 79/237 (33%), Positives = 128/237 (54%)

Query:    19 NITYAAQMS-HNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLP-RLKIASDIVN 76
             +I  ++ +S H + +K +GCCL+   P++V+ SV+     + I   P   R+KIA DI  
Sbjct:    98 DIAVSSMVSGHKNFMKLVGCCLELDYPVMVYHSVKKHYKLE-ISEQPWKKRMKIAEDIAT 156

Query:    77 SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGY 136
             +LAYLH  FPRP V R     NIL +E+ VAK  DF   +SIPEGET +  DR +G   Y
Sbjct:   157 ALAYLHTAFPRPFVYRILSHWNILLDEDGVAKLTDFSHCVSIPEGETFVRVDRDVGLYSY 216

Query:   137 SAPEYISICVLNEKSNVFSFGAFL-FELLAGRIHIWDLLKDTHDHG-----CFFNEYLKN 190
              A  Y+   ++++K++VF+FG F+   LL G  + ++  +   +            + +N
Sbjct:   217 FADNYVRSGLVSDKTDVFAFGIFMGHRLLLGYEYYFEHYRGEEEESEDGFDSLMKRHARN 276

Query:   191 YL----EDKRFTGIPAPIIVQDIPCIEKEQ--QLHASAQLTLECVNNSPEDRPTMVD 241
              L    ED+    I    +++ +  I +++  Q+ A  +L+L C   S E+ PTMV+
Sbjct:   277 LLSTLKEDRPMEEIADSKMIEKMGQISEQERCQMKAFLKLSLRCTGPS-EEVPTMVE 332

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2147805 AT5G15080 [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 3.0e-27, P = 3.0e-27
 Identities = 80/229 (34%), Positives = 129/229 (56%)

Query:    20 ITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIF--GAPLP---RLKIASDI 74
             I +   + H +++K +G C++    +LV++ +  G+L + +F    PLP   R+KIA   
Sbjct:   197 INFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGA 256

Query:    75 VNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIP-EGETHITTDRVIGT 133
                L++LH    +P++ R+FKT NIL + +  AK  DF L+   P EG+TH++T RV+GT
Sbjct:   257 AKGLSFLHEEALKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPDEGKTHVST-RVMGT 315

Query:   134 RGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLE 193
              GY+APEY+    L  KS+V+SFG  L E+L GR  + D  +   +H     E+ + +L 
Sbjct:   316 YGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSM-DKNRPNGEHNLV--EWARPHLL 372

Query:   194 DKR-FTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD 241
             DKR F  +  P +      I+  Q++    QL  +C++  P+ RP M D
Sbjct:   373 DKRRFYRLLDPRLEGHFS-IKGAQKV---TQLAAQCLSRDPKIRPKMSD 417

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2057770 ARSK1 "root-specific kinase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 83/249 (33%), Positives = 132/249 (53%)

Query:     1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI 60
             +  +GH+ HR      +  I +  Q+S+ H++K IG C +    +LV++ +  G+L + +
Sbjct:   125 LDLHGHQGHREW----LAEILFLGQLSNKHLVKLIGFCCEEEQRVLVYEYMPRGSLENQL 180

Query:    61 FGA-PLP-----RLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLL 114
             F    L      R+KIA      LA+LH    +P++ R+FKT NIL + +  AK  DF L
Sbjct:   181 FRRNSLAMAWGIRMKIALGAAKGLAFLHEA-EKPVIYRDFKTSNILLDSDYNAKLSDFGL 239

Query:   115 SISIPEGE-THITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDL 173
             +   PEGE TH+TT RV+GT+GY+APEYI    L   ++V+SFG  L EL+ G+  + D 
Sbjct:   240 AKDGPEGEHTHVTT-RVMGTQGYAAPEYIMTGHLTTMNDVYSFGVVLLELITGKRSM-DN 297

Query:   174 LKDTHDHGCFFNEYLKNYLEDKR-FTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNS 232
              +   +      E+ +  L D+R    I  P +        K +    +A L  +C++  
Sbjct:   298 TRTRREQSLV--EWARPMLRDQRKLERIIDPRLANQ----HKTEAAQVAASLAYKCLSQH 351

Query:   233 PEDRPTMVD 241
             P+ RPTM +
Sbjct:   352 PKYRPTMCE 360

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0048765 "root hair cell differentiation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	241
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	3e-20
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	4e-18
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	3e-17
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	5e-17
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	5e-15
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	2e-13
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	4e-13
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	3e-12
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	5e-12
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	7e-12
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	6e-11
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	1e-10
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	2e-10
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	3e-09
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	4e-09
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	1e-08
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	2e-08
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	2e-08
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	2e-08
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	3e-08
cd06640	277	cd06640, STKc_MST4, Catalytic domain of the Protei	6e-08
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	6e-08
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	7e-08
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	9e-08
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	1e-07
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	1e-07
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	1e-07
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	1e-07
cd05073	260	cd05073, PTKc_Hck, Catalytic domain of the Protein	2e-07
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	2e-07
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	3e-07
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	3e-07
cd05590	320	cd05590, STKc_nPKC_eta, Catalytic domain of the Pr	4e-07
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	4e-07
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	4e-07
cd05608	280	cd05608, STKc_GRK1, Catalytic domain of the Protei	5e-07
cd06641	277	cd06641, STKc_MST3, Catalytic domain of the Protei	5e-07
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	6e-07
cd05607	277	cd05607, STKc_GRK7, Catalytic domain of the Protei	7e-07
cd05606	278	cd05606, STKc_beta_ARK, Catalytic domain of the Pr	8e-07
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	9e-07
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	1e-06
cd05631	285	cd05631, STKc_GRK4, Catalytic domain of the Protei	1e-06
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	1e-06
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	1e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-06
cd05630	285	cd05630, STKc_GRK6, Catalytic domain of the Protei	1e-06
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	2e-06
cd05611	260	cd05611, STKc_Rim15_like, Catalytic domain of fung	2e-06
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	2e-06
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	2e-06
cd05633	279	cd05633, STKc_GRK3, Catalytic domain of the Protei	3e-06
TIGR03903	1266	TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclas	3e-06
cd06642	277	cd06642, STKc_STK25-YSK1, Catalytic domain of the	3e-06
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	3e-06
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	4e-06
cd05632	285	cd05632, STKc_GRK5, Catalytic domain of the Protei	5e-06
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	5e-06
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	5e-06
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	5e-06
cd05584	323	cd05584, STKc_p70S6K, Catalytic domain of the Prot	7e-06
cd05594	325	cd05594, STKc_PKB_alpha, Catalytic domain of the P	7e-06
cd05592	316	cd05592, STKc_nPKC_theta_delta, Catalytic domain o	7e-06
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	8e-06
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	9e-06
cd05605	285	cd05605, STKc_GRK4_like, Catalytic domain of G pro	1e-05
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	1e-05
cd05593	328	cd05593, STKc_PKB_gamma, Catalytic domain of the P	1e-05
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	1e-05
cd05054	337	cd05054, PTKc_VEGFR, Catalytic domain of the Prote	1e-05
cd05587	324	cd05587, STKc_cPKC, Catalytic domain of the Protei	2e-05
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	2e-05
cd05075	272	cd05075, PTKc_Axl, Catalytic domain of the Protein	2e-05
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	2e-05
cd05615	323	cd05615, STKc_cPKC_alpha, Catalytic domain of the	2e-05
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	2e-05
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	3e-05
cd06655	296	cd06655, STKc_PAK2, Catalytic domain of the Protei	3e-05
cd05084	252	cd05084, PTKc_Fes, Catalytic domain of the Protein	3e-05
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	3e-05
cd05616	323	cd05616, STKc_cPKC_beta, Catalytic domain of the P	4e-05
cd07848	287	cd07848, STKc_CDKL5, Catalytic domain of the Serin	4e-05
cd05595	323	cd05595, STKc_PKB_beta, Catalytic domain of the Pr	4e-05
cd05619	316	cd05619, STKc_nPKC_theta, Catalytic domain of the	5e-05
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	5e-05
cd05056	270	cd05056, PTKc_FAK, Catalytic domain of the Protein	6e-05
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	7e-05
cd06618	296	cd06618, PKc_MKK7, Catalytic domain of the dual-sp	9e-05
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	1e-04
cd06649	331	cd06649, PKc_MEK2, Catalytic domain of the dual-sp	1e-04
cd05617	327	cd05617, STKc_aPKC_zeta, Catalytic domain of the P	1e-04
cd05053	293	cd05053, PTKc_FGFR, Catalytic domain of the Protei	1e-04
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	2e-04
cd05110	303	cd05110, PTKc_HER4, Catalytic domain of the Protei	2e-04
cd08223	257	cd08223, STKc_Nek4, Catalytic domain of the Protei	2e-04
cd05604	325	cd05604, STKc_SGK3, Catalytic domain of the Protei	2e-04
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	2e-04
cd05079	284	cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) doma	2e-04
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	2e-04
cd05061	288	cd05061, PTKc_InsR, Catalytic domain of the Protei	2e-04
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	3e-04
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	3e-04
cd05102	338	cd05102, PTKc_VEGFR3, Catalytic domain of the Prot	3e-04
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	3e-04
cd05066	267	cd05066, PTKc_EphR_A, Catalytic domain of the Prot	3e-04
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	4e-04
PTZ00283	496	PTZ00283, PTZ00283, serine/threonine protein kinas	4e-04
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	4e-04
cd05089	297	cd05089, PTKc_Tie1, Catalytic domain of the Protei	4e-04
cd06619	279	cd06619, PKc_MKK5, Catalytic domain of the dual-sp	4e-04
cd06656	297	cd06656, STKc_PAK3, Catalytic domain of the Protei	4e-04
cd07877	345	cd07877, STKc_p38alpha_MAPK14, Catalytic domain of	4e-04
cd05583	288	cd05583, STKc_MSK_N, N-terminal catalytic domain o	4e-04
cd05618	329	cd05618, STKc_aPKC_iota, Catalytic domain of the P	4e-04
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	5e-04
PLN00034	353	PLN00034, PLN00034, mitogen-activated protein kina	6e-04
cd06615	308	cd06615, PKc_MEK, Catalytic domain of the dual-spe	6e-04
cd05055	302	cd05055, PTKc_PDGFR, Catalytic domain of the Prote	6e-04
cd08229	267	cd08229, STKc_Nek7, Catalytic domain of the Protei	6e-04
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	6e-04
cd05047	270	cd05047, PTKc_Tie, Catalytic domain of Tie Protein	6e-04
cd05042	269	cd05042, PTKc_Aatyk, Catalytic domain of the Prote	6e-04
cd06617	283	cd06617, PKc_MKK3_6, Catalytic domain of the dual-	7e-04
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	7e-04
cd05098	307	cd05098, PTKc_FGFR1, Catalytic domain of the Prote	7e-04
cd05620	316	cd05620, STKc_nPKC_delta, Catalytic domain of the	7e-04
cd06650	333	cd06650, PKc_MEK1, Catalytic domain of the dual-sp	8e-04
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	8e-04
cd05571	323	cd05571, STKc_PKB, Catalytic domain of the Protein	8e-04
cd08528	269	cd08528, STKc_Nek10, Catalytic domain of the Prote	8e-04
cd06654	296	cd06654, STKc_PAK1, Catalytic domain of the Protei	8e-04
cd05602	325	cd05602, STKc_SGK1, Catalytic domain of the Protei	8e-04
cd05591	321	cd05591, STKc_nPKC_epsilon, Catalytic domain of th	8e-04
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	0.001
cd05575	323	cd05575, STKc_SGK, Catalytic domain of the Protein	0.001
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	0.001
cd05103	343	cd05103, PTKc_VEGFR2, Catalytic domain of the Prot	0.001
cd05588	329	cd05588, STKc_aPKC, Catalytic domain of the Protei	0.001
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	0.001
cd05603	321	cd05603, STKc_SGK2, Catalytic domain of the Protei	0.001
cd06633	313	cd06633, STKc_TAO3, Catalytic domain of the Protei	0.001
cd05576	237	cd05576, STKc_RPK118_like, Catalytic domain of the	0.001
cd05101	304	cd05101, PTKc_FGFR2, Catalytic domain of the Prote	0.002
cd06658	292	cd06658, STKc_PAK5, Catalytic domain of the Protei	0.002
cd07879	342	cd07879, STKc_p38delta_MAPK13, Catalytic domain of	0.002
cd05104	375	cd05104, PTKc_Kit, Catalytic domain of the Protein	0.002
PHA03207	392	PHA03207, PHA03207, serine/threonine kinase US3; P	0.002
PTZ00263	329	PTZ00263, PTZ00263, protein kinase A catalytic sub	0.002
cd05100	334	cd05100, PTKc_FGFR3, Catalytic domain of the Prote	0.002
cd05062	277	cd05062, PTKc_IGF-1R, Catalytic domain of the Prot	0.002
cd06648	285	cd06648, STKc_PAK_II, Catalytic domain of the Prot	0.002
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	0.002
cd05099	314	cd05099, PTKc_FGFR4, Catalytic domain of the Prote	0.003
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	0.003
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	0.003
cd05077	262	cd05077, PTK_Jak1_rpt1, Pseudokinase (repeat 1) do	0.004
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	0.004
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	0.004
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	0.004

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 85.4 bits (212), Expect = 3e-20
 Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 16/182 (8%)

Query: 1   MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI 60
           +K    E         +  I    +++H +I+K  G         LV +  E G+L+D +
Sbjct: 23  IKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGSLKDLL 82

Query: 61  --FGAPLP---RLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEEN-VAKWFDFLL 114
                 L     L+I   I+  L YLH      I+ R+ K +NIL + +N   K  DF L
Sbjct: 83  KENEGKLSEDEILRILLQILEGLEYLHS---NGIIHRDLKPENILLDSDNGKVKLADFGL 139

Query: 115 SISIPEGETHITTDRVIGTRGYSAPEYI-SICVLNEKSNVFSFGAFLFELLAGRIHIWDL 173
           S  +   ++      ++GT  Y APE +      +EKS+++S G  L+EL      + DL
Sbjct: 140 SKLLTSDKS--LLKTIVGTPAYMAPEVLLGKGYYSEKSDIWSLGVILYEL----PELKDL 193

Query: 174 LK 175
           ++
Sbjct: 194 IR 195

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 80.2 bits (199), Expect = 4e-18
 Identities = 62/227 (27%), Positives = 97/227 (42%), Gaps = 40/227 (17%)

Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI--FGAPLP---RLKIASDIVNSLA 79
           ++SH +I++ +G C Q     +V + +  G L D +   G  L     L++A  I   + 
Sbjct: 57  KLSHPNIVRLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHGEKLTLKDLLQMALQIAKGME 116

Query: 80  YLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRG---Y 136
           YL     +  V R+   +N L  E  V K  DF LS  I E + +       G +    +
Sbjct: 117 YLES---KNFVHRDLAARNCLVTENLVVKISDFGLSRDIYEDDYYRKRG---GGKLPIKW 170

Query: 137 SAPEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLED- 194
            APE +       KS+V+SFG  L+E+   G      +           NE +   LED 
Sbjct: 171 MAPESLKDGKFTSKSDVWSFGVLLWEIFTLGEQPYPGMS----------NEEVLELLEDG 220

Query: 195 KRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD 241
            R   +P P   ++ P      +L+   +L L+C    PEDRPT  +
Sbjct: 221 YR---LPRP---ENCP-----DELY---ELMLQCWAYDPEDRPTFSE 253

Length = 258

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 78.0 bits (193), Expect = 3e-17
 Identities = 51/223 (22%), Positives = 87/223 (39%), Gaps = 31/223 (13%)

Query: 24  AQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI--FGAPLP---RLKIASDIVNSL 78
            ++ H +++K +G C +     +V + +E G L   +      L     L  A  I   +
Sbjct: 56  RKLDHPNVVKLLGVCTEEEPLYIVMEYMEGGDLLSYLRKNRPKLSLSDLLSFALQIARGM 115

Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA 138
            YL     +  + R+   +N L  E  V K  DF LS  + + + +      +  R + A
Sbjct: 116 EYLES---KNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYRKRGGKLPIR-WMA 171

Query: 139 PEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFT 198
           PE +       KS+V+SFG  L+E+       +  +          NE +  YL++    
Sbjct: 172 PESLKEGKFTSKSDVWSFGVLLWEIFTLGEQPYPGMS---------NEEVLEYLKNGYRL 222

Query: 199 GIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD 241
             P P    ++              L L+C    PEDRPT  +
Sbjct: 223 PQP-PNCPPEL------------YDLMLQCWAEDPEDRPTFSE 252

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 77.2 bits (191), Expect = 5e-17
 Identities = 51/224 (22%), Positives = 87/224 (38%), Gaps = 32/224 (14%)

Query: 24  AQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIF---GAPLP---RLKIASDIVNS 77
            ++ H +I+K +G C +    ++V + +  G L D +       L     L  A  I   
Sbjct: 56  RKLDHPNIVKLLGVCTEEEPLMIVMEYMPGGDLLDYLRKNRPKELSLSDLLSFALQIARG 115

Query: 78  LAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYS 137
           + YL     +  + R+   +N L  E  V K  DF LS  + + + +      +  R + 
Sbjct: 116 MEYLES---KNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYKVKGGKLPIR-WM 171

Query: 138 APEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRF 197
           APE +       KS+V+SFG  L+E+       +  +          N  +  YL+    
Sbjct: 172 APESLKEGKFTSKSDVWSFGVLLWEIFTLGEEPYPGMS---------NAEVLEYLKKGYR 222

Query: 198 TGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD 241
              P P    ++             +L L+C    PEDRPT  +
Sbjct: 223 LPKP-PNCPPEL------------YKLMLQCWAEDPEDRPTFSE 253

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 71.8 bits (177), Expect = 5e-15
 Identities = 59/236 (25%), Positives = 92/236 (38%), Gaps = 50/236 (21%)

Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRD------CIFGAPLP-------RLKIA 71
           ++ H ++++ +G C +     LV + +E G L D       +F +P          L  A
Sbjct: 52  KLGHPNVVRLLGVCTEEEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFA 111

Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
             I   + YL     +  V R+   +N L  E+ V K  DF LS  + + + +       
Sbjct: 112 IQIAKGMEYLAS---KKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDDDYYRKK---- 164

Query: 132 GTRGYS-----APEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFN 185
            T G       APE +   +   KS+V+SFG  L+E+   G      L           N
Sbjct: 165 -TGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGLS----------N 213

Query: 186 EYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD 241
           E +  YL       +P P    D        +L+   +L L C    PEDRPT  +
Sbjct: 214 EEVLEYLRKGYR--LPKPEYCPD--------ELY---ELMLSCWQLDPEDRPTFSE 256

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 67.2 bits (165), Expect = 2e-13
 Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 10/147 (6%)

Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI---FGAPLPRLK-IASDIVNSLAY 80
           ++ H +I++            LV +  E G L D +           +     I+++L Y
Sbjct: 53  KLKHPNIVRLYDVFEDEDKLYLVMEYCEGGDLFDLLKKRGRLSEDEARFYLRQILSALEY 112

Query: 81  LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPE 140
           LH    + IV R+ K +NIL +E+   K  DF L+  +  GE   T    +GT  Y APE
Sbjct: 113 LH---SKGIVHRDLKPENILLDEDGHVKLADFGLARQLDPGEKLTT---FVGTPEYMAPE 166

Query: 141 YISICVLNEKSNVFSFGAFLFELLAGR 167
            +      +  +++S G  L+ELL G+
Sbjct: 167 VLLGKGYGKAVDIWSLGVILYELLTGK 193

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 66.7 bits (163), Expect = 4e-13
 Identities = 41/161 (25%), Positives = 65/161 (40%), Gaps = 23/161 (14%)

Query: 18  NNITYAAQMSHNHILKRIGCC--LQTPIPILVFQSVEYGTLRDCIFGAPLPR-------- 67
             I     + H +I+K  G C         L+ + +  G+LRD      L R        
Sbjct: 55  REIEILRTLDHENIVKYKGVCEKPGGRSLRLIMEYLPSGSLRDY-----LQRHRDQINLK 109

Query: 68  --LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHI 125
             L  +S I   + YL     +  + R+   +NIL   E++ K  DF L+  +PE + + 
Sbjct: 110 RLLLFSSQICKGMDYLG---SQRYIHRDLAARNILVESEDLVKISDFGLAKVLPEDKDYY 166

Query: 126 T--TDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELL 164
                       Y APE +     +  S+V+SFG  L+EL 
Sbjct: 167 YVKEPGESPIFWY-APECLRTSKFSSASDVWSFGVTLYELF 206

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 65.1 bits (157), Expect = 3e-12
 Identities = 53/230 (23%), Positives = 89/230 (38%), Gaps = 29/230 (12%)

Query: 27  SHNHILKRIGCCLQTPIPILVFQSVEYGTLRD----CIFGAPLP---RLKIASDIVNSLA 79
              +I+K            LV + V+ G+L D         PL     L I + I+++L 
Sbjct: 56  HPPNIVKLYDFFQDEGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALE 115

Query: 80  YLHFGFPRPIVLRNFKTQNILFNEE-NVAKWFDFLLSISIPEGETHITTDR----VIGTR 134
           YLH    + I+ R+ K +NIL + +  V K  DF L+  +P+  +  +        +GT 
Sbjct: 116 YLH---SKGIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTP 172

Query: 135 GYSAPEYISICVLNE---KSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNY 191
           GY APE +    L      S+++S G  L+ELL G                         
Sbjct: 173 GYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLP-----------PFEGEKNSSATS 221

Query: 192 LEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD 241
              K    +P P +   +     E    A++ L  + +   P++R +   
Sbjct: 222 QTLKIILELPTPSLASPLSPSNPELISKAASDLLKKLLAKDPKNRLSSSS 271

Length = 384

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 63.4 bits (155), Expect = 5e-12
 Identities = 53/161 (32%), Positives = 71/161 (44%), Gaps = 20/161 (12%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIF-GAPLP---RLKIAS 72
              I    ++SH +I++ I          LV +  E G L D +  G PL      KIA 
Sbjct: 46  RREIRILRRLSHPNIVRLIDAFEDKDHLYLVMEYCEGGDLFDYLSRGGPLSEDEAKKIAL 105

Query: 73  DIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIG 132
            I+  L YLH      I+ R+ K +NIL +E  V K  DF L+       +   T  V G
Sbjct: 106 QILRGLEYLH---SNGIIHRDLKPENILLDENGVVKIADFGLA-KKLLKSSSSLTTFV-G 160

Query: 133 TRGYSAPEYISICVLNE------KSNVFSFGAFLFELLAGR 167
           T  Y APE     VL        K +V+S G  L+ELL G+
Sbjct: 161 TPWYMAPE-----VLLGGNGYGPKVDVWSLGVILYELLTGK 196

Length = 260

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 63.0 bits (154), Expect = 7e-12
 Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 11/164 (6%)

Query: 15  SCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI--FGAPLPRLKIA- 71
           S +  I     + H +I+K IG    +    ++ +  E G+LR  I  FG P P   +A 
Sbjct: 45  SIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIILEYAENGSLRQIIKKFG-PFPESLVAV 103

Query: 72  --SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR 129
               ++  LAYLH    + ++ R+ K  NIL  ++ V K  DF ++  +   +       
Sbjct: 104 YVYQVLQGLAYLH---EQGVIHRDIKAANILTTKDGVVKLADFGVATKL--NDVSKDDAS 158

Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDL 173
           V+GT  + APE I +   +  S+++S G  + ELL G    +DL
Sbjct: 159 VVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPPYYDL 202

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 60.7 bits (147), Expect = 6e-11
 Identities = 44/151 (29%), Positives = 72/151 (47%), Gaps = 21/151 (13%)

Query: 26  MSHNHILKRIGCCLQT--PIPILVFQSVEYGTLRDCIFGAPLPRLKI--------ASDIV 75
           + H +I+K  GCC +       L+ + V  G+LRD      LP+ K+        A  I 
Sbjct: 63  LYHENIVKYKGCCSEQGGKGLQLIMEYVPLGSLRDY-----LPKHKLNLAQLLLFAQQIC 117

Query: 76  NSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRG 135
             +AYLH    +  + R+   +N+L + + + K  DF L+ ++PEG  +    R  G   
Sbjct: 118 EGMAYLH---SQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRV-REDGDSP 173

Query: 136 --YSAPEYISICVLNEKSNVFSFGAFLFELL 164
             + A E +     +  S+V+SFG  L+ELL
Sbjct: 174 VFWYAVECLKENKFSYASDVWSFGVTLYELL 204

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 59.5 bits (145), Expect = 1e-10
 Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 11/156 (7%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI--FGAPLPRLKIA--- 71
           IN I    +  H +I+K  G  L+     +V +    G+L+D +      L   +IA   
Sbjct: 45  INEIQILKKCKHPNIVKYYGSYLKKDELWIVMEFCSGGSLKDLLKSTNQTLTESQIAYVC 104

Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
            +++  L YLH      I+ R+ K  NIL   +   K  DF LS  +         + ++
Sbjct: 105 KELLKGLEYLHS---NGIIHRDIKAANILLTSDGEVKLIDFGLSAQL---SDTKARNTMV 158

Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           GT  + APE I+    + K++++S G    EL  G+
Sbjct: 159 GTPYWMAPEVINGKPYDYKADIWSLGITAIELAEGK 194

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 58.7 bits (143), Expect = 2e-10
 Identities = 46/161 (28%), Positives = 70/161 (43%), Gaps = 16/161 (9%)

Query: 25  QMSHNHILKRIGCCLQ-TPIPILVFQSVEY---GTLRDCI--FGAPLPRLKIAS---DIV 75
            + H +I++  G         + +F   EY   G+L   +  FG  LP   I      I+
Sbjct: 55  SLQHPNIVRYYGSERDEEKNTLNIFL--EYVSGGSLSSLLKKFG-KLPEPVIRKYTRQIL 111

Query: 76  NSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRG 135
             LAYLH      IV R+ K  NIL + + V K  DF  +  + + ET   T  V GT  
Sbjct: 112 EGLAYLH---SNGIVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEGTGSVRGTPY 168

Query: 136 YSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKD 176
           + APE I        ++++S G  + E+  G+   W  L +
Sbjct: 169 WMAPEVIRGEEYGRAADIWSLGCTVIEMATGK-PPWSELGN 208

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 55.6 bits (134), Expect = 3e-09
 Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 11/158 (6%)

Query: 16  CINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI---FGAPLPR---LK 69
            I+     A++  ++I++     L      +V +  E G L   +    G PLP     +
Sbjct: 46  AIDEARVLAKLDSSYIIRYYESFLDKGKLNIVMEYAENGDLHKLLKMQRGRPLPEDQVWR 105

Query: 70  IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR 129
               I+  LA+LH    + I+ R+ K+ N+  +  +  K  D  ++  +   +     + 
Sbjct: 106 FFIQILLGLAHLH---SKKILHRDIKSLNLFLDAYDNVKIGDLGVAKLL--SDNTNFANT 160

Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           ++GT  Y +PE       NEKS+V++ G  L+E   G+
Sbjct: 161 IVGTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTGK 198

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 55.3 bits (133), Expect = 4e-09
 Identities = 39/151 (25%), Positives = 75/151 (49%), Gaps = 12/151 (7%)

Query: 25  QMSHNHILKRIGCCLQ-TPIPILVFQSVEYGTLRDCIFG-----APLPRLKIASDIVNSL 78
           ++SH  +++  G C + +PI  LVF+ +E+G L D +       +    L +  D+   +
Sbjct: 55  KLSHPKLVQLYGVCTERSPI-CLVFEFMEHGCLSDYLRAQRGKFSQETLLGMCLDVCEGM 113

Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA 138
           AYL       ++ R+   +N L  E  V K  DF ++  + + +   +T      + +S+
Sbjct: 114 AYLE---SSNVIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQYTSSTGTKFPVK-WSS 169

Query: 139 PEYISICVLNEKSNVFSFGAFLFELLA-GRI 168
           PE  S    + KS+V+SFG  ++E+ + G+ 
Sbjct: 170 PEVFSFSKYSSKSDVWSFGVLMWEVFSEGKT 200

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score = 54.0 bits (130), Expect = 1e-08
 Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 7/107 (6%)

Query: 62  GAPLPRLKI-ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPE 120
           G P  R    A+ I+  L +LH    R IV R+ K +N+L ++    +  D  L++ +  
Sbjct: 91  GFPEARAIFYAAQIICGLEHLH---QRRIVYRDLKPENVLLDDHGNVRISDLGLAVELKG 147

Query: 121 GETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           G+      R  GT GY APE +   V +   + F+ G  L+E++AGR
Sbjct: 148 GKK--IKGRA-GTPGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGR 191

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 53.3 bits (129), Expect = 2e-08
 Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 5/98 (5%)

Query: 70  IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR 129
            A++IV +L YLH      I+ R+ K +NIL + +   K  DF L+  +    +   T  
Sbjct: 98  YAAEIVLALEYLH---SLGIIYRDLKPENILLDADGHIKLTDFGLAKELSSEGSRTNT-- 152

Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
             GT  Y APE +      +  + +S G  L+E+L G+
Sbjct: 153 FCGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGK 190

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 53.2 bits (128), Expect = 2e-08
 Identities = 40/153 (26%), Positives = 72/153 (47%), Gaps = 19/153 (12%)

Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTL--------RDCIFGAPLPRLKIASDIVN 76
            + H ++++ +G  LQ     +V + +  G+L        R  I  A    L  A D+  
Sbjct: 56  TLRHPNLVQLLGVVLQGNPLYIVTEYMAKGSLVDYLRSRGRAVITLAQQ--LGFALDVCE 113

Query: 77  SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGY 136
            + YL     +  V R+   +N+L +E+ VAK  DF L+    E      + ++     +
Sbjct: 114 GMEYLE---EKNFVHRDLAARNVLVSEDLVAKVSDFGLA---KEASQGQDSGKL--PVKW 165

Query: 137 SAPEYISICVLNEKSNVFSFGAFLFELLA-GRI 168
           +APE +     + KS+V+SFG  L+E+ + GR+
Sbjct: 166 TAPEALREKKFSTKSDVWSFGILLWEIYSFGRV 198

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 53.2 bits (128), Expect = 2e-08
 Identities = 46/154 (29%), Positives = 65/154 (42%), Gaps = 23/154 (14%)

Query: 27  SHNHILKRIGCCL---QTPIPILVFQSVEYGTLRDCIFGAPLPR---------LKIASDI 74
              +I+K  G  L    + I I + +  E G+L D I+     R          KIA  +
Sbjct: 57  KSPYIVKYYGAFLDESSSSIGIAM-EYCEGGSL-DSIYKKVKKRGGRIGEKVLGKIAESV 114

Query: 75  VNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRV-IGT 133
           +  L+YLH    R I+ R+ K  NIL   +   K  DF +S     GE   +      GT
Sbjct: 115 LKGLSYLH---SRKIIHRDIKPSNILLTRKGQVKLCDFGVS-----GELVNSLAGTFTGT 166

Query: 134 RGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
             Y APE I     +  S+V+S G  L E+   R
Sbjct: 167 SFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNR 200

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 53.0 bits (127), Expect = 3e-08
 Identities = 43/191 (22%), Positives = 79/191 (41%), Gaps = 40/191 (20%)

Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI----------FGAPLPR------- 67
           Q++H H++K  G C Q    +L+ +  +YG+LR  +           G+   R       
Sbjct: 59  QVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDN 118

Query: 68  -----------LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSI 116
                      +  A  I   + YL       +V R+   +N+L  E    K  DF LS 
Sbjct: 119 PDERALTMGDLISFAWQISRGMQYLA---EMKLVHRDLAARNVLVAEGRKMKISDFGLSR 175

Query: 117 SIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL--LAGRIH----- 169
            + E ++++   +      + A E +   +   +S+V+SFG  L+E+  L G  +     
Sbjct: 176 DVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIAP 235

Query: 170 --IWDLLKDTH 178
             +++LLK  +
Sbjct: 236 ERLFNLLKTGY 246

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

 Score = 52.0 bits (124), Expect = 6e-08
 Identities = 50/222 (22%), Positives = 84/222 (37%), Gaps = 31/222 (13%)

Query: 20  ITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIAS---DIVN 76
           IT  +Q    ++ K  G  L+     ++ + +  G+  D +   P    +IA+   +I+ 
Sbjct: 53  ITVLSQCDSPYVTKYYGSYLKGTKLWIIMEYLGGGSALDLLRAGPFDEFQIATMLKEILK 112

Query: 77  SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGY 136
            L YLH       + R+ K  N+L +E+   K  DF ++  +   +T I  +  +GT  +
Sbjct: 113 GLDYLH---SEKKIHRDIKAANVLLSEQGDVKLADFGVAGQLT--DTQIKRNTFVGTPFW 167

Query: 137 SAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKR 196
            APE I     + K++++S G    EL  G         D H     F            
Sbjct: 168 MAPEVIQQSAYDSKADIWSLGITAIELAKGE----PPNSDMHPMRVLFL----------- 212

Query: 197 FTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT 238
                 P +  +     KE            C+N  P  RPT
Sbjct: 213 IPKNNPPTLTGEFSKPFKE--------FIDACLNKDPSFRPT 246

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Length = 277

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 51.6 bits (124), Expect = 6e-08
 Identities = 52/225 (23%), Positives = 93/225 (41%), Gaps = 36/225 (16%)

Query: 26  MSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI----FGA-PLPRL-KIASDIVNSLA 79
           + H ++++  G  L  P+ ++V +    G+L D +     G   +  L   A  I N + 
Sbjct: 53  LDHENLIRLYGVVLTHPL-MMVTELAPLGSLLDRLRKDALGHFLISTLCDYAVQIANGMR 111

Query: 80  YLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTD---RVIGTRGY 136
           YL     +  + R+   +NIL   ++  K  DF L  ++P+ E H   +   +V     +
Sbjct: 112 YLE---SKRFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVMEEHLKV--PFAW 166

Query: 137 SAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKR 196
            APE +     +  S+V+ FG  L+E+       W         G   ++ LK    DK 
Sbjct: 167 CAPESLRTRTFSHASDVWMFGVTLWEMFTYGEEPW--------AGLSGSQILKKI--DKE 216

Query: 197 FTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD 241
              +  P   +  P     Q ++    + L+C  ++P DRPT   
Sbjct: 217 GERLERP---EACP-----QDIY---NVMLQCWAHNPADRPTFAA 250

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 51.5 bits (124), Expect = 7e-08
 Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 4/102 (3%)

Query: 68  LKIASDIVNSLAYLHFG-FPRPIVL-RNFKTQNILFNEENVAKWFDFLLSISIPEGETHI 125
            +I + ++ +L   H    P   VL R+ K  NI  +  N  K  DF L+  +    +  
Sbjct: 108 WRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKILGHDSSFA 167

Query: 126 TTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
            T   +GT  Y +PE ++    +EKS+++S G  ++EL A  
Sbjct: 168 KT--YVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALS 207

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 51.0 bits (123), Expect = 9e-08
 Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 21/116 (18%)

Query: 70  IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDF-----LLSISIPEGETH 124
            A++I+ +L YLH    + I+ R+ K +NIL +++   K  DF     L   S PE    
Sbjct: 107 YAAEILLALEYLH---SKGIIHRDLKPENILLDKDMHIKITDFGTAKVLDPNSSPESNKG 163

Query: 125 ITTDRV-------------IGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
             T+               +GT  Y +PE ++     + S++++ G  ++++L G+
Sbjct: 164 DATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGK 219

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 53/219 (24%), Positives = 92/219 (42%), Gaps = 55/219 (25%)

Query: 37  CCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKI------ASDIVNSLAYLHFGFPRPIV 90
           C L+ PI I V + ++YG+L + + G     LK+      A+ + + +AYL     +  +
Sbjct: 70  CTLEEPIYI-VTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLE---AQNYI 125

Query: 91  LRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTR---GYSAPEYISICVL 147
            R+   +N+L  E N+ K  DF L+  I E           G +    ++APE       
Sbjct: 126 HRDLAARNVLVGENNICKVADFGLARVIKEDIYEARE----GAKFPIKWTAPEAALYNRF 181

Query: 148 NEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIV 206
           + KS+V+SFG  L E++  GR+                            + G+    ++
Sbjct: 182 SIKSDVWSFGILLTEIVTYGRM---------------------------PYPGMTNAEVL 214

Query: 207 QDI------PCIEK-EQQLHASAQLTLECVNNSPEDRPT 238
           Q +      PC     ++L+    + L+C    P+DRPT
Sbjct: 215 QQVDQGYRMPCPPGCPKELY---DIMLDCWKEDPDDRPT 250

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 41/151 (27%), Positives = 67/151 (44%), Gaps = 19/151 (12%)

Query: 24  AQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-LPRLKI---ASDIVNSLA 79
           AQ+ H  I++ IG C   P+ +LV +    G L   +     +P   +   A  +   +A
Sbjct: 51  AQLDHPCIVRLIGVCKGEPL-MLVMELAPLGPLLKYLKKRREIPVSDLKELAHQVAMGMA 109

Query: 80  YL---HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTR-- 134
           YL   HF      V R+   +N+L    + AK  DF +S ++  G  +         R  
Sbjct: 110 YLESKHF------VHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDYYRATT--AGRWP 161

Query: 135 -GYSAPEYISICVLNEKSNVFSFGAFLFELL 164
             + APE I+    + KS+V+S+G  L+E  
Sbjct: 162 LKWYAPECINYGKFSSKSDVWSYGVTLWEAF 192

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 50.6 bits (121), Expect = 1e-07
 Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 7/155 (4%)

Query: 15  SCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI---FGAPLPRLKIA 71
           +  N       +SH +I++     L+    ++V +    GTL + I     + L    I 
Sbjct: 45  AAQNECQVLKLLSHPNIIEYYENFLEDKALMIVMEYAPGGTLAEYIQKRCNSLLDEDTIL 104

Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNE-ENVAKWFDFLLSISIPEGETHITTDRV 130
              V  L  LH    + I+ R+ KTQNIL ++ + V K  DF +S  +       T   V
Sbjct: 105 HFFVQILLALHHVHTKLILHRDLKTQNILLDKHKMVVKIGDFGISKILSSKSKAYT---V 161

Query: 131 IGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA 165
           +GT  Y +PE       N+KS++++ G  L+EL +
Sbjct: 162 VGTPCYISPELCEGKPYNQKSDIWALGCVLYELAS 196

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 48/167 (28%), Positives = 69/167 (41%), Gaps = 39/167 (23%)

Query: 24  AQMSHNHILKRIGCCLQTPIPILVFQSVEYGTL--------RDCIFGAPLPR-------- 67
               H +I+K  G C +   PI+VF+ +E+G L         D  F              
Sbjct: 63  TNFQHENIVKFYGVCTEGDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLS 122

Query: 68  --LKIASDIVNSLAYL---HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGE 122
             L+IA  I + + YL   HF      V R+  T+N L   + V K  DF +S  +    
Sbjct: 123 QLLQIAVQIASGMVYLASQHF------VHRDLATRNCLVGYDLVVKIGDFGMSRDV---- 172

Query: 123 THITTD--RVIGTR----GYSAPEYISICVLNEKSNVFSFGAFLFEL 163
              TTD  RV G       +  PE I       +S+V+SFG  L+E+
Sbjct: 173 --YTTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEI 217

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

 Score = 50.0 bits (119), Expect = 2e-07
 Identities = 50/224 (22%), Positives = 93/224 (41%), Gaps = 43/224 (19%)

Query: 26  MSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFG-----APLPRL-KIASDIVNSLA 79
           + H+ ++K      + PI I+  + +  G+L D +        PLP+L   ++ I   +A
Sbjct: 58  LQHDKLVKLHAVVTKEPIYIIT-EFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMA 116

Query: 80  YLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAP 139
           ++     R  + R+ +  NIL +   V K  DF L+  I + E +   +       ++AP
Sbjct: 117 FIE---QRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNE-YTAREGAKFPIKWTAP 172

Query: 140 EYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFT 198
           E I+      KS+V+SFG  L E++  GRI                            + 
Sbjct: 173 EAINFGSFTIKSDVWSFGILLMEIVTYGRI---------------------------PYP 205

Query: 199 GIPAPIIVQDIPCIEKEQQLHASAQ----LTLECVNNSPEDRPT 238
           G+  P +++ +    +  +     +    + + C  N PE+RPT
Sbjct: 206 GMSNPEVIRALERGYRMPRPENCPEELYNIMMRCWKNRPEERPT 249

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Hck is present in myeloid and lymphoid cells that play a role in the development of cancer. It may be important in the oncogenic signaling of the protein Tel-Abl, which induces a chronic myelogenous leukemia (CML)-like disease. Hck also acts as a negative regulator of granulocyte colony-stimulating factor (G-CSF)-induced proliferation of granulocytic precursors, suggesting a possible role in the development of acute myeloid leukemia (AML). In addition, Hck is essential in regulating the degranulation of polymorphonuclear leukocytes (PMNs). Genetic polymorphisms affect the expression level of Hck, which affects PMN mediator release and influences the development of chronic obstructive pulmonary disease (COPD). Length = 260

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 15/106 (14%)

Query: 70  IASDIVNSLAYLH-FGFPRPIVLRNFKTQNILFNEENVAKWFDFLLS--------ISIPE 120
             ++IV +L YLH  G    I+ R+ K  NIL +     K  DF LS        I++ +
Sbjct: 98  YIAEIVLALEYLHSNG----IIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLND 153

Query: 121 GETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
            E      R++GT  Y APE I     ++  + +S G  L+E L G
Sbjct: 154 DEKEDK--RIVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEFLVG 197

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 49.9 bits (119), Expect = 3e-07
 Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 13/151 (8%)

Query: 26  MSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI--FGAPLPRL---KIASDIVNSLAY 80
           + H +I++ +G CL      +  + V  G++   +  FG PLP     K    I++ +AY
Sbjct: 59  LKHVNIVQYLGTCLDDNTISIFMEFVPGGSISSILNRFG-PLPEPVFCKYTKQILDGVAY 117

Query: 81  LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI----GTRGY 136
           LH      +V R+ K  N++     + K  DF  +  +     H T   ++    GT  +
Sbjct: 118 LH---NNCVVHRDIKGNNVMLMPNGIIKLIDFGCARRLAWVGLHGTHSNMLKSMHGTPYW 174

Query: 137 SAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
            APE I+      KS+++S G  +FE+  G+
Sbjct: 175 MAPEVINESGYGRKSDIWSIGCTVFEMATGK 205

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 44/165 (26%), Positives = 65/165 (39%), Gaps = 28/165 (16%)

Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGT 133
           IV++++Y+H      I+ R+ KT NI   +  + K  DF +S  +    +   T  V+GT
Sbjct: 110 IVSAVSYIH---KAGILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYSMAET--VVGT 164

Query: 134 RGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLE 193
             Y +PE       N KS++++ G  L+ELL         LK T D     N  +K    
Sbjct: 165 PYYMSPELCQGVKYNFKSDIWALGCVLYELLT--------LKRTFDATNPLNLVVK---- 212

Query: 194 DKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT 238
                      IVQ                L    +   PE RPT
Sbjct: 213 -----------IVQGNYTPVVSVYSSELISLVHSLLQQDPEKRPT 246

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|173681 cd05590, STKc_nPKC_eta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

 Score = 49.5 bits (118), Expect = 4e-07
 Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 15/149 (10%)

Query: 26  MSHNH-ILKRIGCCLQTPIPIL-VFQSVEYGTLRDCI-----FGAPLPRLKIASDIVNSL 78
           ++ NH  L ++ CC QTP  +  V + V  G L   I     F     R   A++I ++L
Sbjct: 51  LARNHPFLTQLYCCFQTPDRLFFVMEFVNGGDLMFHIQKSRRFDEARARF-YAAEITSAL 109

Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDF-LLSISIPEGETHITTDRVIGTRGYS 137
            +LH    + I+ R+ K  N+L + E   K  DF +    I  G    TT    GT  Y 
Sbjct: 110 MFLH---DKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFNG---KTTSTFCGTPDYI 163

Query: 138 APEYISICVLNEKSNVFSFGAFLFELLAG 166
           APE +   +     + ++ G  L+E+L G
Sbjct: 164 APEILQEMLYGPSVDWWAMGVLLYEMLCG 192

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signaling of cell-type specific differentiation. It is also expressed in pro-B cells and early-stage thymocytes, and acts as a key regulator in early B-cell development. PKC-eta increases glioblastoma multiforme (GBM) proliferation and resistance to radiation, and is being developed as a therapeutic target for the management of GBM. Length = 320

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 43/139 (30%), Positives = 63/139 (45%), Gaps = 16/139 (11%)

Query: 37  CCLQTPIPILVFQSVEYGTLRDCIFGA------PLPRLKI-ASDIVNSLAYLHFGFPRPI 89
            C QT     +F  +EY    D +F          PR +  A++IV  L +LH    R I
Sbjct: 63  SCFQTKDR--LFFVMEYVNGGDLMFHIQRSGRFDEPRARFYAAEIVLGLQFLH---ERGI 117

Query: 90  VLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH-ITTDRVIGTRGYSAPEYISICVLN 148
           + R+ K  N+L + E   K  DF +     EG    +TT    GT  Y APE +S     
Sbjct: 118 IYRDLKLDNVLLDSEGHIKIADFGMC---KEGILGGVTTSTFCGTPDYIAPEILSYQPYG 174

Query: 149 EKSNVFSFGAFLFELLAGR 167
              + ++ G  L+E+LAG+
Sbjct: 175 PAVDWWALGVLLYEMLAGQ 193

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 6/98 (6%)

Query: 70  IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR 129
              +IV +L YLH    + I+ R+ K  NIL +E+      DF ++  +        T  
Sbjct: 105 WICEIVLALEYLH---SKGIIHRDIKPDNILLDEQGHVHITDFNIATKVTPDT---LTTS 158

Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
             GT GY APE +     +   + +S G   +E L G+
Sbjct: 159 TSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGK 196

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|173699 cd05608, STKc_GRK1, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

 Score = 49.1 bits (117), Expect = 5e-07
 Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 22/163 (13%)

Query: 22  YAAQMSHNHILKRI--------GCCLQTPIPI-LVFQSVEYGTLRDCIF-------GAPL 65
           Y   M    IL ++            QT   + LV   +  G LR  I+       G P 
Sbjct: 37  YEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIMNGGDLRYHIYNVDEENPGFPE 96

Query: 66  PR-LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH 124
           PR     + I++ L +LH    R I+ R+ K +N+L + +   +  D  L++ + +G++ 
Sbjct: 97  PRACFYTAQIISGLEHLH---QRRIIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQS- 152

Query: 125 ITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
             T    GT G+ APE +     +   + F+ G  L+E++A R
Sbjct: 153 -KTKGYAGTPGFMAPELLQGEEYDFSVDYFALGVTLYEMIAAR 194

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual group of GRKs and is expressed in retinal cells. It phosphorylates rhodopsin in rod cells, which leads to termination of the phototransduction cascade. Mutations in GRK1 are associated to a recessively inherited form of stationary nightblindness called Oguchi disease. Length = 280

>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

 Score = 48.9 bits (116), Expect = 5e-07
 Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 8/150 (5%)

Query: 20  ITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIAS---DIVN 76
           IT  +Q    ++ K  G  L+     ++ + +  G+  D +   PL   +IA+   +I+ 
Sbjct: 53  ITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGPLDETQIATILREILK 112

Query: 77  SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGY 136
            L YLH       + R+ K  N+L +E    K  DF ++  +   +T I  +  +GT  +
Sbjct: 113 GLDYLH---SEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLT--DTQIKRNTFVGTPFW 167

Query: 137 SAPEYISICVLNEKSNVFSFGAFLFELLAG 166
            APE I     + K++++S G    EL  G
Sbjct: 168 MAPEVIKQSAYDSKADIWSLGITAIELAKG 197

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and intrauterine growth retardation. Length = 277

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 48.8 bits (116), Expect = 6e-07
 Identities = 61/227 (26%), Positives = 97/227 (42%), Gaps = 39/227 (17%)

Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTL------RDCIFGAPLPRLKIASDIVNSL 78
           Q SH++I++  G   +    +++ + +E G L       D  F +    + +   I   +
Sbjct: 62  QFSHHNIIRLEGVVTKFKPAMIITEYMENGALDKYLRDHDGEF-SSYQLVGMLRGIAAGM 120

Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISI---PEGETHITTDRVIGTRG 135
            YL        V R+   +NIL N     K  DF LS  +   PEG T+ T+   I  R 
Sbjct: 121 KYLS---DMNYVHRDLAARNILVNSNLECKVSDFGLSRVLEDDPEG-TYTTSGGKIPIR- 175

Query: 136 YSAPEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLED 194
           ++APE I+       S+V+SFG  ++E+++ G    WD+           +E +K   + 
Sbjct: 176 WTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWDMSN---------HEVMKAINDG 226

Query: 195 KRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD 241
            R   +PAP+   D P         A  QL L+C       RP  VD
Sbjct: 227 FR---LPAPM---DCP--------SAVYQLMLQCWQQDRARRPRFVD 259

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

 Score = 48.8 bits (116), Expect = 7e-07
 Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 3/80 (3%)

Query: 89  IVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLN 148
           IV R+ K +N+L +++   +  D  L++ + +G+T   T R  GT GY APE +     +
Sbjct: 116 IVYRDMKPENVLLDDQGNCRLSDLGLAVELKDGKT--ITQRA-GTNGYMAPEILKEEPYS 172

Query: 149 EKSNVFSFGAFLFELLAGRI 168
              + F+ G  ++E++AGR 
Sbjct: 173 YPVDWFAMGCSIYEMVAGRT 192

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual group of GRKs. It is primarily found in the retina and plays a role in the regulation of opsin light receptors. GRK7 is located in retinal cone outer segments and plays an important role in regulating photoresponse of the cones. Length = 277

>gnl|CDD|173697 cd05606, STKc_beta_ARK, Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

 Score = 48.4 bits (115), Expect = 8e-07
 Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 8/97 (8%)

Query: 71  ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRV 130
           A++I+  L ++H  F   +V R+ K  NIL +E    +  D  L+    + + H +    
Sbjct: 103 AAEIILGLEHMHNRF---VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHAS---- 155

Query: 131 IGTRGYSAPEYISICVLNEKS-NVFSFGAFLFELLAG 166
           +GT GY APE +   V  + S + FS G  LF+LL G
Sbjct: 156 VGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRG 192

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is composed of GRK2, GRK3, and similar proteins. GRK2 and GRK3 are both widely expressed in many tissues, although GRK2 is present at higher levels. They contain an N-terminal RGS homology (RH) domain, a central catalytic domain, and C-terminal pleckstrin homology (PH) domain that mediates PIP2 and G protein betagamma-subunit translocation to the membrane. GRK2 (also called beta-ARK or beta-ARK1) is important in regulating several cardiac receptor responses. It plays a role in cardiac development and in hypertension. Deletion of GRK2 in mice results in embryonic lethality, caused by hypoplasia of the ventricular myocardium. GRK2 also plays important roles in the liver (as a regulator of portal blood pressure), in immune cells, and in the nervous system. Altered GRK2 expression has been reported in several disorders including major depression, schizophrenia, bipolar disorder, and Parkinsonism. Length = 278

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 48.0 bits (115), Expect = 9e-07
 Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 5/98 (5%)

Query: 70  IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR 129
           I    +  L YLH       + R+ K  NIL NEE  AK  DF +S  +   +T    + 
Sbjct: 104 ILYQTLKGLEYLHS---NKKIHRDIKAGNILLNEEGQAKLADFGVSGQL--TDTMAKRNT 158

Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           VIGT  + APE I     N K++++S G    E+  G+
Sbjct: 159 VIGTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEGK 196

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 38/117 (32%), Positives = 52/117 (44%), Gaps = 14/117 (11%)

Query: 52  EYGTLRDCIFGAPLPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFD 111
           + G +   I G      KIA  +V  L YL+      I+ R+ K  NIL N     K  D
Sbjct: 96  KGGPIPVEILG------KIAVAVVEGLTYLYN--VHRIMHRDIKPSNILVNSRGQIKLCD 147

Query: 112 FLLSISIPEGE-THITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           F +S     GE  +   D  +GT  Y +PE I       KS+V+S G  + EL  G+
Sbjct: 148 FGVS-----GELINSIADTFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALGK 199

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|173720 cd05631, STKc_GRK4, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

 Score = 48.1 bits (114), Expect = 1e-06
 Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 13/84 (15%)

Query: 89  IVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLN 148
           IV R+ K +NIL ++    +  D  L++ IPEGET     RV GT GY APE     V+N
Sbjct: 123 IVYRDLKPENILLDDRGHIRISDLGLAVQIPEGET--VRGRV-GTVGYMAPE-----VIN 174

Query: 149 EKSNVFS-----FGAFLFELLAGR 167
            +   FS      G  ++E++ G+
Sbjct: 175 NEKYTFSPDWWGLGCLIYEMIQGQ 198

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found in the testis, but is also present in the cerebellum and kidney. It is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK4 polymorphisms are associated with hypertension and salt sensitivity, as they cause hyperphosphorylation, desensitization, and internalization of the dopamine 1 (D1) receptor while increasing the expression of the angiotensin II type 1 receptor. GRK4 plays a crucial role in the D1 receptor regulation of sodium excretion and blood pressure. Length = 285

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 30/96 (31%), Positives = 54/96 (56%), Gaps = 5/96 (5%)

Query: 68  LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITT 127
           + +A  +   +AYL     +  + R+   +NIL  E+ V K  DF L+  I E + ++++
Sbjct: 107 IDMACQVAEGMAYLE---EQNSIHRDLAARNILVGEDLVCKVADFGLARLIKE-DVYLSS 162

Query: 128 DRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL 163
           D+ I  + ++APE  S    + KS+V+SFG  L+E+
Sbjct: 163 DKKIPYK-WTAPEAASHGTFSTKSDVWSFGILLYEM 197

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 47.6 bits (113), Expect = 1e-06
 Identities = 37/150 (24%), Positives = 72/150 (48%), Gaps = 16/150 (10%)

Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI-----FGAPLPRL-KIASDIVNSL 78
           ++ H ++++ +G  L   + I V + +  G L + +         + +L + + D+   +
Sbjct: 55  KLHHKNLVRLLGVILHNGLYI-VMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGM 113

Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA 138
            YL     + +V R+   +NIL +E+ VAK  DF L+     G      D       ++A
Sbjct: 114 EYLE---SKKLVHRDLAARNILVSEDGVAKVSDFGLARVGSMG-----VDNSKLPVKWTA 165

Query: 139 PEYISICVLNEKSNVFSFGAFLFELLA-GR 167
           PE +     + KS+V+S+G  L+E+ + GR
Sbjct: 166 PEALKHKKFSSKSDVWSYGVLLWEVFSYGR 195

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 8/144 (5%)

Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPR-LKIASDIVNSLAYLHF 83
           ++ H +I+K IG C       L+ + +E   L + +      R  KIA  I  +L +LH 
Sbjct: 739 KLQHPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVLRNLSWERRRKIAIGIAKALRFLHC 798

Query: 84  GFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYIS 143
                +V+ N   + I+ + ++        L +S+P      T  +   +  Y APE   
Sbjct: 799 RCSPAVVVGNLSPEKIIIDGKDEPH-----LRLSLPG--LLCTDTKCFISSAYVAPETRE 851

Query: 144 ICVLNEKSNVFSFGAFLFELLAGR 167
              + EKS+++ FG  L ELL G+
Sbjct: 852 TKDITEKSDIYGFGLILIELLTGK 875

Length = 968

>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

 Score = 47.7 bits (113), Expect = 1e-06
 Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 14/101 (13%)

Query: 71  ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRV 130
           A++I   L  LH      IV R+ K +NIL ++    +  D  L++ +PEG+T     RV
Sbjct: 108 AAEICCGLEDLH---QERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQT--IKGRV 162

Query: 131 IGTRGYSAPEYISICVLNEK----SNVFSFGAFLFELLAGR 167
            GT GY APE     V NE+     + ++ G  L+E++AG+
Sbjct: 163 -GTVGYMAPE----VVKNERYTFSPDWWALGCLLYEMIAGQ 198

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK6 plays important roles in the regulation of dopamine, M3 muscarinic, opioid, and chemokine receptor signaling. It also plays maladaptive roles in addiction and Parkinson's disease. GRK6-deficient mice exhibit altered dopamine receptor regulation, decreased lymphocyte chemotaxis, and increased acute inflammation and neutrophil chemotaxis. Length = 285

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 47.1 bits (113), Expect = 2e-06
 Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 11/97 (11%)

Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGT 133
           +  +L YLH    R I+ R+ K QNI      + K  DF +S  +        T  V+GT
Sbjct: 112 LCLALKYLH---SRKILHRDIKPQNIFLTSNGLVKLGDFGISKVLSSTVDLAKT--VVGT 166

Query: 134 RGYSAPEYISICV---LNEKSNVFSFGAFLFELLAGR 167
             Y +PE   +C     N KS+++S G  L+EL   +
Sbjct: 167 PYYLSPE---LCQNKPYNYKSDIWSLGCVLYELCTLK 200

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 9/98 (9%)

Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTD 128
           +  +++V  +  LH    R I+ R+ K +N+L ++    K  DF LS         +   
Sbjct: 101 QYIAEVVLGVEDLH---QRGIIHRDIKPENLLIDQTGHLKLTDFGLS------RNGLENK 151

Query: 129 RVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
           + +GT  Y APE I     ++ S+ +S G  +FE L G
Sbjct: 152 KFVGTPDYLAPETILGVGDDKMSDWWSLGCVIFEFLFG 189

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stationary phase (G0). Thus, it plays a crucial role in regulating yeast proliferation, differentiation, and aging. Cek1 may facilitate progression of mitotic anaphase. Length = 260

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 46.9 bits (111), Expect = 2e-06
 Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 9/102 (8%)

Query: 68  LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITT 127
           LK + D+  ++ YL        V R+   +N+L +E+NVAK  DF L+      E   T 
Sbjct: 105 LKFSLDVCEAMEYLE---ANNFVHRDLAARNVLVSEDNVAKVSDFGLT-----KEASSTQ 156

Query: 128 DRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA-GRI 168
           D       ++APE +     + KS+V+SFG  L+E+ + GR+
Sbjct: 157 DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRV 198

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 46.9 bits (111), Expect = 2e-06
 Identities = 43/179 (24%), Positives = 71/179 (39%), Gaps = 28/179 (15%)

Query: 26  MSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIF-------------GAPLPR----- 67
           + H HI++  G C +    ++VF+ + +G L   +                   +     
Sbjct: 64  LQHQHIVRFYGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQ 123

Query: 68  -LKIASDIVNSLAY---LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGET 123
            L IAS I + + Y   LHF      V R+  T+N L  +  V K  DF +S  I   + 
Sbjct: 124 MLAIASQIASGMVYLASLHF------VHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDY 177

Query: 124 HITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGC 182
           +    R +    +  PE I       +S+++SFG  L+E+       W  L +T    C
Sbjct: 178 YRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLSNTEAIEC 236

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|173722 cd05633, STKc_GRK3, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

 Score = 46.9 bits (111), Expect = 3e-06
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 8/97 (8%)

Query: 71  ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRV 130
           A++I+  L ++H  F   +V R+ K  NIL +E    +  D  L+    + + H +    
Sbjct: 103 ATEIILGLEHMHNRF---VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHAS---- 155

Query: 131 IGTRGYSAPEYISI-CVLNEKSNVFSFGAFLFELLAG 166
           +GT GY APE +      +  ++ FS G  LF+LL G
Sbjct: 156 VGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRG 192

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is widely expressed in many tissues. GRK3-deficient mice show a lack of olfactory receptor desensitization and altered regulation of the M2 muscarinic airway. GRK3 is involved in modulating the cholinergic response of airway smooth muscles. It also plays a role in dopamine receptor regulation. GRK3 promoter polymorphisms may be associated with bipolar disorder. Length = 279

>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein

 Score = 47.5 bits (113), Expect = 3e-06
 Identities = 44/160 (27%), Positives = 76/160 (47%), Gaps = 22/160 (13%)

Query: 24  AQMSHNHILKRI--GCCLQTPIPIL--VFQSVEYGTLRDCIFG-APLPRL---KIASDIV 75
           A++ H +I+  +  G     P  +L  VF+ V   TLR+ +     LP     ++   ++
Sbjct: 33  ARLYHPNIVALLDSGEA---PPGLLFAVFEYVPGRTLREVLAADGALPAGETGRLMLQVL 89

Query: 76  NSLAYLHFGFPRPIVLRNFKTQNILFNEENV---AKWFDFLLSISIP----EGETHIT-T 127
           ++LA  H    + IV R+ K QNI+ ++  V   AK  DF +   +P         +T T
Sbjct: 90  DALACAH---NQGIVHRDLKPQNIMVSQTGVRPHAKVLDFGIGTLLPGVRDADVATLTRT 146

Query: 128 DRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
             V+GT  Y APE +    +   S+++++G    E L G+
Sbjct: 147 TEVLGTPTYCAPEQLRGEPVTPNSDLYAWGLIFLECLTGQ 186

This model represents proteins of 1350 in length, in multiple species of Burkholderia, in Acidovorax avenae subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1, and in multiple copies in Sorangium cellulosum, in genomic neighborhoods that include a cyclodehydratase/docking scaffold fusion protein (TIGR03882) and a member of the thiazole/oxazole modified metabolite (TOMM) precursor family TIGR03795. It has a kinase domain in the N-terminal 300 amino acids, followed by a cyclase homology domain, followed by regions without named domain definitions. It is a probable bacteriocin-like metabolite biosynthesis protein [Cellular processes, Toxin production and resistance]. Length = 1266

>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

 Score = 46.6 bits (110), Expect = 3e-06
 Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 8/150 (5%)

Query: 20  ITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIAS---DIVN 76
           IT  +Q    +I +  G  L+     ++ + +  G+  D +   PL    IA+   +I+ 
Sbjct: 53  ITVLSQCDSPYITRYYGSYLKGTKLWIIMEYLGGGSALDLLKPGPLEETYIATILREILK 112

Query: 77  SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGY 136
            L YLH       + R+ K  N+L +E+   K  DF ++  +   +T I  +  +GT  +
Sbjct: 113 GLDYLH---SERKIHRDIKAANVLLSEQGDVKLADFGVAGQLT--DTQIKRNTFVGTPFW 167

Query: 137 SAPEYISICVLNEKSNVFSFGAFLFELLAG 166
            APE I     + K++++S G    EL  G
Sbjct: 168 MAPEVIKQSAYDFKADIWSLGITAIELAKG 197

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares features with the Albright hereditary osteodystrophy (AHO) phenotype. Length = 277

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 46.3 bits (110), Expect = 3e-06
 Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 19/152 (12%)

Query: 25  QMSHNHILKRIGCCL-QTPIPILVFQSVEYGTLRDC------IFGAPLPRLKIASDIVNS 77
           ++SH ++++  G C  Q PI I V + +  G L +         G     L + SD+  +
Sbjct: 55  KLSHPNLVQLYGVCTKQRPIFI-VTEYMANGCLLNYLRERKGKLGTEW-LLDMCSDVCEA 112

Query: 78  LAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTR--- 134
           + YL        + R+   +N L  E+NV K  DF L+  + + +   +     GT+   
Sbjct: 113 MEYLE---SNGFIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQYTSSQ----GTKFPV 165

Query: 135 GYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
            ++ PE       + KS+V+SFG  ++E+ + 
Sbjct: 166 KWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSE 197

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 57/216 (26%), Positives = 87/216 (40%), Gaps = 37/216 (17%)

Query: 46  LVFQSVEYGTLRDCIFGAP--LPRLKIASDI---VNSLAYLHFGFPRPIVLRNFKTQNIL 100
           LVF+ VE  TL + +  +P  LP   + S I   + ++AY H      I+ R+ K +NIL
Sbjct: 77  LVFEYVER-TLLELLEASPGGLPPDAVRSYIWQLLQAIAYCH---SHNIIHRDIKPENIL 132

Query: 101 FNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSN------VF 154
            +E  V K  DF  + ++        TD V  TR Y APE     +L   +N      V+
Sbjct: 133 VSESGVLKLCDFGFARALRARPASPLTDYVA-TRWYRAPE-----LLVGDTNYGKPVDVW 186

Query: 155 SFGAFLFELLAGRIHIWDLLKDTHDH----------GCFFNEYLKNYLEDKRFTGIPAPI 204
           + G  + ELL G      L     D           G     + + +  + RF G+  P 
Sbjct: 187 AIGCIMAELLDGE----PLFPGDSDIDQLYLIQKCLGPLPPSHQELFSSNPRFAGVAFPE 242

Query: 205 IVQDIPCIEKEQQLHASAQLTL--ECVNNSPEDRPT 238
             Q      +     +S  L     C+   P++R T
Sbjct: 243 PSQPESLERRYPGKVSSPALDFLKACLRMDPKERLT 278

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

 Score = 46.1 bits (109), Expect = 5e-06
 Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 16/102 (15%)

Query: 71  ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRV 130
           A++I+  L  LH       V R+ K +NIL ++    +  D  L++ IPEGE+     RV
Sbjct: 108 AAEILCGLEDLH---RENTVYRDLKPENILLDDYGHIRISDLGLAVKIPEGES--IRGRV 162

Query: 131 IGTRGYSAPEYISICVLNEKSNVFS-----FGAFLFELLAGR 167
            GT GY APE     VLN +    S      G  ++E++ G+
Sbjct: 163 -GTVGYMAPE-----VLNNQRYTLSPDYWGLGCLIYEMIEGQ 198

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with the membrane though an N-terminal PIP2 binding domain and also binds phospholipids via its C-terminus. GRK5 deficiency is associated with early Alzheimer's disease in humans and mouse models. GRK5 also plays a crucial role in the pathogenesis of sporadic Parkinson's disease. It participates in the regulation and desensitization of PDGFRbeta, a receptor tyrosine kinase involved in a variety of downstream cellular effects including cell growth, chemotaxis, apoptosis, and angiogenesis. GRK5 also regulates Toll-like receptor 4, which is involved in innate and adaptive immunity. Length = 285

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 38/118 (32%), Positives = 52/118 (44%), Gaps = 9/118 (7%)

Query: 56  LRDCIFGAPLPRL-KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLL 114
           L++     P   L KIA  ++  L YLH      I+ R+ K  NIL N     K  DF +
Sbjct: 90  LKEVQGRIPERILGKIAVAVLKGLTYLHE--KHKIIHRDVKPSNILVNSRGQIKLCDFGV 147

Query: 115 SISIPEGE-THITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIW 171
           S     G+  +      +GT  Y APE I     + KS+++S G  L EL  GR    
Sbjct: 148 S-----GQLVNSLAKTFVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYP 200

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 46.0 bits (109), Expect = 5e-06
 Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%)

Query: 18  NNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEY---GTLRDCI--FGAPLPRL--KI 70
             I     + H  I++  GC L+    + +F  +EY   G+++D +  +GA    +  K 
Sbjct: 53  CEIQLLKNLQHERIVQYYGC-LRDDETLSIF--MEYMPGGSVKDQLKAYGALTETVTRKY 109

Query: 71  ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR- 129
              I+  + YLH      IV R+ K  NIL +     K  DF  S  +    +  T  + 
Sbjct: 110 TRQILEGVEYLH---SNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICSSGTGMKS 166

Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELL 164
           V GT  + +PE IS      K++V+S G  + E+L
Sbjct: 167 VTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEML 201

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 45.9 bits (109), Expect = 5e-06
 Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 13/148 (8%)

Query: 24  AQMSHNHILKRIGCCLQTPIPILVFQSVEYGTL-------RDCIFGAPLPRLKIASDIVN 76
           A + H H+++ +G CL +    L+ Q +  G L       +D I       L     I  
Sbjct: 64  ASVDHPHVVRLLGICL-SSQVQLITQLMPLGCLLDYVRNHKDNI--GSQYLLNWCVQIAK 120

Query: 77  SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGY 136
            ++YL     + +V R+   +N+L       K  DF L+  +   E     +       +
Sbjct: 121 GMSYLE---EKRLVHRDLAARNVLVKTPQHVKITDFGLAKLLDVDEKEYHAEGGKVPIKW 177

Query: 137 SAPEYISICVLNEKSNVFSFGAFLFELL 164
            A E I   +   KS+V+S+G  ++EL+
Sbjct: 178 MALESILHRIYTHKSDVWSYGVTVWELM 205

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|173675 cd05584, STKc_p70S6K, Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

 Score = 45.9 bits (109), Expect = 7e-06
 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 7/96 (7%)

Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDF-LLSISIPEGETHITTDRV 130
           S+I  +L +LH    + I+ R+ K +NIL + +   K  DF L   SI EG     T   
Sbjct: 107 SEISLALEHLH---QQGIIYRDLKPENILLDAQGHVKLTDFGLCKESIHEGTV---THTF 160

Query: 131 IGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
            GT  Y APE +      +  + +S GA ++++L G
Sbjct: 161 CGTIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTG 196

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the insulin receptor substrate IRS-1, among others. Mammals contain two isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta). Length = 323

>gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

 Score = 45.8 bits (108), Expect = 7e-06
 Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 15/148 (10%)

Query: 57  RDCIFGAPLPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDF-LLS 115
           R+ +F     R    ++IV++L YLH    + +V R+ K +N++ +++   K  DF L  
Sbjct: 88  RERVFSEDRARF-YGAEIVSALDYLHS--EKNVVYRDLKLENLMLDKDGHIKITDFGLCK 144

Query: 116 ISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLK 175
             I +G T  T     GT  Y APE +         + +  G  ++E++ GR+  ++   
Sbjct: 145 EGIKDGATMKT---FCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYN--- 198

Query: 176 DTHDHGCFFNEYLKNYLEDKRFTGIPAP 203
              DH   F   L   +E+ RF    +P
Sbjct: 199 --QDHEKLFELIL---MEEIRFPRTLSP 221

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficient in PKB-alpha exhibit perinatal morbidity, growth retardation, reduction in body weight accompanied by reduced sizes of multiple organs, and enhanced apoptosis in some cell types. PKB-alpha activity has been reported to be frequently elevated in breast and prostate cancers. In some cancer cells, PKB-alpha may act as a suppressor of metastasis. Length = 325

>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

 Score = 45.6 bits (108), Expect = 7e-06
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 5/97 (5%)

Query: 71  ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRV 130
           A++I+  L +LH    + I+ R+ K  N+L +++   K  DF +      GE        
Sbjct: 102 AAEIICGLQFLH---KKGIIYRDLKLDNVLLDKDGHIKIADFGMCKENMNGEG--KASTF 156

Query: 131 IGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
            GT  Y APE +     NE  + +SFG  L+E+L G+
Sbjct: 157 CGTPDYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQ 193

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. Length = 316

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 45.5 bits (108), Expect = 8e-06
 Identities = 63/241 (26%), Positives = 97/241 (40%), Gaps = 58/241 (24%)

Query: 26  MSHNHILKRIGCCLQTPIP--ILVFQSVEYGTLRDC-------IFGAPLPRLKIASDIVN 76
           + H++I+K  G C         LV + + YG+LRD        +    L  L  AS I  
Sbjct: 62  LQHDNIVKYKGVCYSAGRRNLRLVMEYLPYGSLRDYLQKHRERLDHRKL--LLYASQICK 119

Query: 77  SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPE----------GETHIT 126
            + YL     +  V R+  T+NIL   EN  K  DF L+  +P+          GE+ I 
Sbjct: 120 GMEYLG---SKRYVHRDLATRNILVESENRVKIGDFGLTKVLPQDKEYYKVREPGESPIF 176

Query: 127 TDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTH-DHGCF-F 184
                    + APE ++    +  S+V+SFG  L+EL             T+ D  C   
Sbjct: 177 ---------WYAPESLTESKFSVASDVWSFGVVLYELF------------TYSDKSCSPP 215

Query: 185 NEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASA-------QLTLECVNNSPEDRP 237
            E+++    DK+       I+   I  ++   +L A          +  EC NN P  RP
Sbjct: 216 AEFMRMMGNDKQ----GQMIVYHLIELLKNNGRLPAPPGCPAEIYAIMKECWNNDPSQRP 271

Query: 238 T 238
           +
Sbjct: 272 S 272

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 45.4 bits (108), Expect = 9e-06
 Identities = 53/180 (29%), Positives = 79/180 (43%), Gaps = 35/180 (19%)

Query: 64  PLPRL-KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGE 122
            LP+L  +A+ I   +AYL     R  + R+   +NIL  E  V K  DF L+  I   E
Sbjct: 101 RLPQLVDMAAQIAEGMAYLE---SRNYIHRDLAARNILVGENLVCKIADFGLARLI---E 154

Query: 123 THITTDRVIGTR---GYSAPEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTH 178
               T R  G +    ++APE  +      KS+V+SFG  L E++  GR+          
Sbjct: 155 DDEYTARE-GAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVPY-------- 205

Query: 179 DHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT 238
             G    E L+      R   +P P    + P     ++L+    L L+C +  PE+RPT
Sbjct: 206 -PGMTNREVLEQVERGYR---MPRP---PNCP-----EELY---DLMLQCWDKDPEERPT 250

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 16/102 (15%)

Query: 71  ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRV 130
           A++I   L  LH      IV R+ K +NIL ++    +  D  L++ IPEGET     RV
Sbjct: 108 AAEITCGLEDLH---RERIVYRDLKPENILLDDYGHIRISDLGLAVEIPEGET--IRGRV 162

Query: 131 IGTRGYSAPEYISICVLNEKSNVFS-----FGAFLFELLAGR 167
            GT GY APE     V+  +   FS      G  ++E++ G+
Sbjct: 163 -GTVGYMAPE-----VVKNERYTFSPDWWGLGCLIYEMIEGK 198

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, GRK6, and similar GRKs. GRKs in this group contain an N-terminal RGS homology (RH) domain and a catalytic domain, but lack a G protein betagamma-subunit binding domain. They are localized to the plasma membrane through post-translational lipid modification or direct binding to PIP2. Length = 285

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 34/151 (22%), Positives = 65/151 (43%), Gaps = 19/151 (12%)

Query: 29  NHILKRIGCCLQTPIPILVFQSVEYGTLRD-----------CIFGAPLPRLKI---ASDI 74
           +H+++ +G        ++V + +  G L+                 P    K    A++I
Sbjct: 69  HHVVRLLGVVSTGQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEI 128

Query: 75  VNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH-ITTDRVIGT 133
            + +AYL     +  V R+   +N +  E+   K  DF ++  I E + +      ++  
Sbjct: 129 ADGMAYLA---AKKFVHRDLAARNCMVAEDLTVKIGDFGMTRDIYETDYYRKGGKGLLPV 185

Query: 134 RGYSAPEYISICVLNEKSNVFSFGAFLFELL 164
           R + APE +   V   KS+V+SFG  L+E+ 
Sbjct: 186 R-WMAPESLKDGVFTTKSDVWSFGVVLWEMA 215

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|173684 cd05593, STKc_PKB_gamma, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

 Score = 45.1 bits (106), Expect = 1e-05
 Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 15/128 (11%)

Query: 71  ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRV 130
            ++IV++L YLH G    IV R+ K +N++ +++   K  DF L     EG T   T + 
Sbjct: 101 GAEIVSALDYLHSG---KIVYRDLKLENLMLDKDGHIKITDFGLC---KEGITDAATMKT 154

Query: 131 I-GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLK 189
             GT  Y APE +         + +  G  ++E++ GR+  ++      DH   F   L 
Sbjct: 155 FCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYN-----QDHEKLFELIL- 208

Query: 190 NYLEDKRF 197
             +ED +F
Sbjct: 209 --MEDIKF 214

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulated in estrogen-deficient breast cancer cells, androgen-independent prostate cancer cells, and primary ovarian tumors. It acts as a key mediator in the genesis of ovarian cancer. Length = 328

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 53/228 (23%), Positives = 95/228 (41%), Gaps = 49/228 (21%)

Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKI------ASDIVNSL 78
           Q+ H  +++      Q PI I + + +E G+L D +      +L I      A+ I   +
Sbjct: 57  QLQHPRLVRLYAVVTQEPIYI-ITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGM 115

Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA 138
           A++     +  + R+ +  NIL +E    K  DF L+  I + E +   +       ++A
Sbjct: 116 AFIE---RKNYIHRDLRAANILVSETLCCKIADFGLARLIEDNE-YTAREGAKFPIKWTA 171

Query: 139 PEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRF 197
           PE I+      KS+V+SFG  L E++  GRI                            +
Sbjct: 172 PEAINYGTFTIKSDVWSFGILLTEIVTYGRI---------------------------PY 204

Query: 198 TGIPAPIIVQDI------PCIEK-EQQLHASAQLTLECVNNSPEDRPT 238
            G+  P ++Q++      P  +   ++L+   +L   C    PE+RPT
Sbjct: 205 PGMTNPEVIQNLERGYRMPRPDNCPEELY---ELMRLCWKEKPEERPT 249

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|173635 cd05054, PTKc_VEGFR, Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 43/155 (27%), Positives = 66/155 (42%), Gaps = 21/155 (13%)

Query: 87  RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICV 146
           R  + R+   +NIL +E NV K  DF L+  I +   ++          + APE I   V
Sbjct: 192 RKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPESIFDKV 251

Query: 147 LNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIV 206
              +S+V+SFG  L+E+ +        L  +   G   +E     L  K  T + AP   
Sbjct: 252 YTTQSDVWSFGVLLWEIFS--------LGASPYPGVQIDEEFCRRL--KEGTRMRAP--- 298

Query: 207 QDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD 241
                   E        + L+C +N+PEDRPT  +
Sbjct: 299 --------EYATPEIYSIMLDCWHNNPEDRPTFSE 325

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. There are five VEGF ligands in mammals, which bind, in an overlapping pattern to the three VEGFRs, which can form homo or heterodimers. VEGFRs regulate the cardiovascular system. They are critical for vascular development during embryogenesis and blood vessel formation in adults. They induce cellular functions common to other growth factor receptors such as cell migration, survival, and proliferation. VEGFR1 binds VEGFA, VEGFB, and placenta growth factor (PLGF). It regulates monocyte and macrophage migration, vascular permeability, haematopoiesis, and the recruitment of haematopietic progenitor cells from the bone marrow. Length = 337

>gnl|CDD|173678 cd05587, STKc_cPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 7/98 (7%)

Query: 71  ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDF-LLSISIPEGETHITTDR 129
           A++I   L +LH    + I+ R+ K  N++ + E   K  DF +   +I  G+T   T  
Sbjct: 107 AAEIAIGLFFLH---SKGIIYRDLKLDNVMLDAEGHIKIADFGMCKENIFGGKT---TRT 160

Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
             GT  Y APE I+     +  + ++FG  L+E+LAG+
Sbjct: 161 FCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQ 198

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory domain. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. cPKCs are potent kinases for histones, myelin basic protein, and protamine. PKC-gamma is mainly expressed in neuronal tissues. It plays a role in protection from ischemia. Length = 324

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 34/145 (23%), Positives = 72/145 (49%), Gaps = 10/145 (6%)

Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA------PLPRLKIASDIVNSL 78
           ++ H ++++ +G C + P   ++ + + YG L D +          +  L +A+ I +++
Sbjct: 58  EIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAM 117

Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA 138
            YL     +  + R+   +N L  E ++ K  DF LS  +  G+T+           ++A
Sbjct: 118 EYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLS-RLMTGDTYTAHAGAKFPIKWTA 173

Query: 139 PEYISICVLNEKSNVFSFGAFLFEL 163
           PE ++    + KS+V++FG  L+E+
Sbjct: 174 PESLAYNKFSIKSDVWAFGVLLWEI 198

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase, Axl

 Score = 44.3 bits (104), Expect = 2e-05
 Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 19/155 (12%)

Query: 25  QMSHNHILKRIGCCLQT------PIPILVFQSVEYGTLR---------DCIFGAPLPRL- 68
           +  H ++++ IG CLQT      P P+++   +++G L          DC    P   L 
Sbjct: 56  EFDHPNVMRLIGVCLQTVESEGYPSPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLV 115

Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTD 128
           K  +DI + + YL     +  + R+   +N + NE       DF LS  I  G+ +    
Sbjct: 116 KFMTDIASGMEYLS---SKSFIHRDLAARNCMLNENMNVCVADFGLSKKIYNGDYYRQGR 172

Query: 129 RVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL 163
                  + A E ++  V   KS+V+SFG  ++E+
Sbjct: 173 IAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEI 207

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transformed cells. Axl signaling is important in many cellular functions such as survival, anti-apoptosis, proliferation, migration, and adhesion. Axl was originally isolated from patients with chronic myelogenous leukemia and a chronic myeloproliferative disorder. Axl is overexpressed in many human cancers including colon, squamous cell, thyroid, breast, and lung carcinomas. Length = 272

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 6/94 (6%)

Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGT 133
           +V +  YLH    R I+ R+ K +N+L +     K  DF  +  +  G+   T     GT
Sbjct: 102 VVLAFEYLH---NRGIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQKTWT---FCGT 155

Query: 134 RGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
             Y APE I     +   + +S G  L+ELL GR
Sbjct: 156 PEYVAPEIILNKGYDFSVDYWSLGILLYELLTGR 189

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|173706 cd05615, STKc_cPKC_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

 Score = 44.2 bits (104), Expect = 2e-05
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 7/98 (7%)

Query: 71  ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDF-LLSISIPEGETHITTDR 129
           A++I   L +LH    R I+ R+ K  N++ + E   K  DF +    + +G   +TT  
Sbjct: 107 AAEISVGLFFLH---RRGIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMVDG---VTTRT 160

Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
             GT  Y APE I+     +  + +++G  L+E+LAG+
Sbjct: 161 FCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQ 198

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. PKC-alpha is expressed in many tissues and is associated with cell proliferation, apoptosis, and cell motility. It plays a role in the signaling of the growth factors PDGF, VEGF, EGF, and FGF. Abnormal levels of PKC-alpha have been detected in many transformed cell lines and several human tumors. In addition, PKC-alpha is required for HER2 dependent breast cancer invasion. Length = 323

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 8/96 (8%)

Query: 71  ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRV 130
           AS+IV +L YLH    + IV R+ K +NIL ++E   K  DF  +      +    T  +
Sbjct: 107 ASEIVCALEYLH---SKEIVYRDLKPENILLDKEGHIKLTDFGFA-----KKLRDRTWTL 158

Query: 131 IGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
            GT  Y APE I     N+  + ++ G  ++E+L G
Sbjct: 159 CGTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVG 194

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 46/165 (27%), Positives = 74/165 (44%), Gaps = 30/165 (18%)

Query: 23  AAQMS---HNHILKRIGCCLQTPIPILVFQSVEYGTL-------RDCIFGAPLPRLK--- 69
           A  MS   H +I+K +G CL      ++ + +E G L       R   FG PL  LK   
Sbjct: 50  AHLMSNFNHPNIVKLLGVCLLNEPQYIIMELMEGGDLLSYLRDARVERFGPPLLTLKELL 109

Query: 70  -IASDIVNSLAYL---HFGFPRPIVLRNFKTQNILFNEEN-----VAKWFDFLLSISIPE 120
            I  D+     YL   HF      + R+   +N L +E+      V K  DF L+  I +
Sbjct: 110 DICLDVAKGCVYLEQMHF------IHRDLAARNCLVSEKGYDADRVVKIGDFGLARDIYK 163

Query: 121 GETH-ITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELL 164
            + +    + ++  R + APE +       +S+V+SFG  ++E+L
Sbjct: 164 SDYYRKEGEGLLPVR-WMAPESLLDGKFTTQSDVWSFGVLMWEIL 207

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

 Score = 43.6 bits (102), Expect = 3e-05
 Identities = 33/150 (22%), Positives = 66/150 (44%), Gaps = 2/150 (1%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDIVN 76
           IN I    ++ + +I+  +   L      +V + +  G+L D +    +   +IA+    
Sbjct: 64  INEILVMKELKNPNIVNFLDSFLVGDELFVVMEYLAGGSLTDVVTETCMDEAQIAAVCRE 123

Query: 77  SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGY 136
            L  L F     ++ R+ K+ N+L   +   K  DF     I   ++  +T  ++GT  +
Sbjct: 124 CLQALEFLHANQVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQSKRST--MVGTPYW 181

Query: 137 SAPEYISICVLNEKSNVFSFGAFLFELLAG 166
            APE ++      K +++S G    E++ G
Sbjct: 182 MAPEVVTRKAYGPKVDIWSLGIMAIEMVEG 211

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptotic signaling. It is cleaved and activated by caspases leading to morphological changes during apoptosis. PAK2 is also activated in response to a variety of stresses including DNA damage, hyperosmolarity, serum starvation, and contact inhibition, and may play a role in coordinating the stress response. PAK2 also contributes to cancer cell invasion through a mechanism distinct from that of PAK1. Length = 296

>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes

 Score = 43.5 bits (102), Expect = 3e-05
 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 4/141 (2%)

Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDIV---NSLAYL 81
           Q SH +I++ IG C Q     +V + V+ G           PRLK+   I    N+ A +
Sbjct: 49  QYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLT-FLRTEGPRLKVKELIQMVENAAAGM 107

Query: 82  HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEY 141
            +   +  + R+   +N L  E+NV K  DF +S    +G    T         ++APE 
Sbjct: 108 EYLESKHCIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYASTGGMKQIPVKWTAPEA 167

Query: 142 ISICVLNEKSNVFSFGAFLFE 162
           ++    + +S+V+SFG  L+E
Sbjct: 168 LNYGRYSSESDVWSFGILLWE 188

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 43.8 bits (103), Expect = 3e-05
 Identities = 44/175 (25%), Positives = 69/175 (39%), Gaps = 29/175 (16%)

Query: 26  MSHNHILKRIGCCLQTPIPILVFQSVEYGTLRD-----------CIFGAPLPR------- 67
           + H HI+K  G C      I+VF+ +++G L              + G P          
Sbjct: 64  LQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLS 123

Query: 68  --LKIASDIVNSLAYL---HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGE 122
             L IAS I + + YL   HF      V R+  T+N L     + K  DF +S  +   +
Sbjct: 124 QMLHIASQIASGMVYLASQHF------VHRDLATRNCLVGANLLVKIGDFGMSRDVYSTD 177

Query: 123 THITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDT 177
            +      +    +  PE I       +S+V+SFG  L+E+       W  L +T
Sbjct: 178 YYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLSNT 232

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|173707 cd05616, STKc_cPKC_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

 Score = 43.8 bits (103), Expect = 4e-05
 Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 7/98 (7%)

Query: 71  ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDF-LLSISIPEGETHITTDR 129
           A++I   L +LH    + I+ R+ K  N++ + E   K  DF +   ++ +G   +TT  
Sbjct: 107 AAEIAIGLFFLH---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENMWDG---VTTKT 160

Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
             GT  Y APE I+     +  + ++FG  L+E+LAG+
Sbjct: 161 FCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQ 198

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. The PKC beta isoforms (I and II), generated by alternative splicing of a single gene, are preferentially activated by hyperglycemia-induced DAG in retinal tissues. This is implicated in diabetic microangiopathy such as ischemia, neovascularization, and abnormal vasodilator function. PKC-beta also plays an important role in VEGF signaling. In addition, glucose regulates proliferation in retinal endothelial cells via PKC-betaI. PKC-beta is also being explored as a therapeutic target in cancer. It contributes to tumor formation and is involved in the tumor host mechanisms of inflammation and angiogenesis. Length = 323

>gnl|CDD|173745 cd07848, STKc_CDKL5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

 Score = 43.5 bits (102), Expect = 4e-05
 Identities = 47/169 (27%), Positives = 73/169 (43%), Gaps = 12/169 (7%)

Query: 46  LVFQSVEYGTLR---DCIFGAPLPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFN 102
           LVF+ VE   L    +   G P P  K+ S I   +  +H+     IV R+ K +N+L +
Sbjct: 77  LVFEYVEKNMLELLEEMPNGVP-PE-KVRSYIYQLIKAIHWCHKNDIVHRDIKPENLLIS 134

Query: 103 EENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFE 162
             +V K  DF  + ++ EG     T+ V  TR Y +PE +      +  +++S G  L E
Sbjct: 135 HNDVLKLCDFGFARNLSEGSNANYTEYV-ATRWYRSPELLLGAPYGKAVDMWSVGCILGE 193

Query: 163 ------LLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPII 205
                 L  G   I  L       G    E +K +  + RF G+  P +
Sbjct: 194 LSDGQPLFPGESEIDQLFTIQKVLGPLPAEQMKLFYSNPRFHGLRFPAV 242

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes cause a phenotype similar to Rett syndrome (RTT), a progressive neurodevelopmental disorder. These pathogenic mutations are located in the N-terminal portion of the protein within the kinase domain. Length = 287

>gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

 Score = 43.5 bits (102), Expect = 4e-05
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 15/127 (11%)

Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           ++IV++L YLH    R +V R+ K +N++ +++   K  DF L     EG +   T +  
Sbjct: 102 AEIVSALEYLH---SRDVVYRDIKLENLMLDKDGHIKITDFGLC---KEGISDGATMKTF 155

Query: 132 -GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKN 190
            GT  Y APE +         + +  G  ++E++ GR+  ++      DH   F   L  
Sbjct: 156 CGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYN-----QDHERLFELIL-- 208

Query: 191 YLEDKRF 197
            +E+ RF
Sbjct: 209 -MEEIRF 214

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in PKB-beta display normal growth weights but exhibit severe insulin resistance and diabetes, accompanied by lipoatrophy and B-cell failure. Length = 323

>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

 Score = 43.4 bits (102), Expect = 5e-05
 Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 6/104 (5%)

Query: 65  LPRLKI-ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGET 123
           LPR    A++I+  L +LH    + IV R+ K  NIL + +   K  DF +      G+ 
Sbjct: 95  LPRATFYAAEIICGLQFLH---SKGIVYRDLKLDNILLDTDGHIKIADFGMCKENMLGDA 151

Query: 124 HITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
              T    GT  Y APE +     N   + +SFG  L+E+L G+
Sbjct: 152 K--TCTFCGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQ 193

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. Although T-cells also express other PKC isoforms, PKC-theta is unique in that upon antigen stimulation, it is translocated to the plasma membrane at the immunological synapse, where it mediates signals essential for T-cell activation. It is essential for TCR-induced proliferation, cytokine production, T-cell survival, and the differentiation and effector function of T-helper (Th) cells, particularly Th2 and Th17. PKC-theta is being developed as a therapeutic target for Th2-mediated allergic inflammation and Th17-mediated autoimmune diseases. Length = 316

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 56/228 (24%), Positives = 95/228 (41%), Gaps = 48/228 (21%)

Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTL------RDCIFGAPLPRLKIASDIVNSL 78
           Q  H +I++  G   ++   +++ + +E G+L       D  F      + +   I + +
Sbjct: 61  QFDHPNIIRLEGVVTKSRPVMIITEYMENGSLDKFLRENDGKF-TVGQLVGMLRGIASGM 119

Query: 79  AYL-HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRG-- 135
            YL    +    V R+   +NIL N   V K  DF LS  + + E   TT      +G  
Sbjct: 120 KYLSEMNY----VHRDLAARNILVNSNLVCKVSDFGLSRRLEDSEATYTT------KGGK 169

Query: 136 ----YSAPEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKN 190
               ++APE I+       S+V+SFG  ++E+++ G    WD+     D        +K 
Sbjct: 170 IPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYWDM--SNQD-------VIKA 220

Query: 191 YLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT 238
             +  R   +P P+   D P       L+   QL L+C      +RPT
Sbjct: 221 VEDGYR---LPPPM---DCP-----SALY---QLMLDCWQKDRNERPT 254

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

 Score = 42.8 bits (101), Expect = 6e-05
 Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 10/145 (6%)

Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI----FGAPLPRL-KIASDIVNSLA 79
           Q  H HI+K IG   + P+ I V +    G LR  +    +   L  L   +  +  +LA
Sbjct: 63  QFDHPHIVKLIGVITENPVWI-VMELAPLGELRSYLQVNKYSLDLASLILYSYQLSTALA 121

Query: 80  YLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAP 139
           YL     +  V R+   +N+L +  +  K  DF LS  + E E++    +      + AP
Sbjct: 122 YLE---SKRFVHRDIAARNVLVSSPDCVKLGDFGLSRYL-EDESYYKASKGKLPIKWMAP 177

Query: 140 EYISICVLNEKSNVFSFGAFLFELL 164
           E I+       S+V+ FG  ++E+L
Sbjct: 178 ESINFRRFTSASDVWMFGVCMWEIL 202

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 42.5 bits (100), Expect = 7e-05
 Identities = 39/161 (24%), Positives = 71/161 (44%), Gaps = 14/161 (8%)

Query: 20  ITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI--FGA---PLPRLKIASDI 74
           I    ++ H +I++ +G  L      +  + V  G++   +  +GA    L R      I
Sbjct: 57  IALLKELQHENIVQYLGSSLDADHLNIFLEYVPGGSVAALLNNYGAFEETLVR-NFVRQI 115

Query: 75  VNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR----V 130
           +  L YLH    R I+ R+ K  NIL + +   K  DF +S  +        T+     +
Sbjct: 116 LKGLNYLH---NRGIIHRDIKGANILVDNKGGIKISDFGISKKLEANSLSTKTNGARPSL 172

Query: 131 IGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIW 171
            G+  + APE +       K++++S G  + E+L G+ H +
Sbjct: 173 QGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGK-HPF 212

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

 Score = 42.4 bits (100), Expect = 9e-05
 Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 15/106 (14%)

Query: 69  KIASDIVNSLAYL---HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHI 125
           K+   IV +L YL   H      ++ R+ K  NIL +     K  DF +S  + + +   
Sbjct: 118 KMTVAIVKALHYLKEKH-----GVIHRDVKPSNILLDASGNVKLCDFGISGRLVDSKAK- 171

Query: 126 TTDRVIGTRGYSAPEYISICVLNEK----SNVFSFGAFLFELLAGR 167
              R  G   Y APE I     N K    ++V+S G  L EL  G+
Sbjct: 172 --TRSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQ 215

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates its downstream target, c-Jun N-terminal kinase (JNK), on specific threonine and tyrosine residues. Although MKK7 is capable of dual phosphorylation, it prefers to phosphorylate the threonine residue of JNK. Thus, optimal activation of JNK requires both MKK4 (not included in this subfamily) and MKK7. MKK7 is primarily activated by cytokines. MKK7 is essential for liver formation during embryogenesis. It plays roles in G2/M cell cycle arrest and cell growth. In addition, it is involved in the control of programmed cell death, which is crucial in oncogenesis, cancer chemoresistance, and antagonism to TNFalpha-induced killing, through its inhibition by Gadd45beta and the subsequent suppression of the JNK cascade. Length = 296

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 33/140 (23%), Positives = 67/140 (47%), Gaps = 9/140 (6%)

Query: 31  ILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIA---SDIVNSLAYLHFGFPR 87
           I K  G  L+ P   ++ +  E G++R  +   P+    I+    +++ +L Y+H     
Sbjct: 64  ITKYYGSYLKGPRLWIIMEYAEGGSVRTLMKAGPIAEKYISVIIREVLVALKYIH---KV 120

Query: 88  PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVL 147
            ++ R+ K  NIL       K  DF ++  + +  +  +T   +GT  + APE I+    
Sbjct: 121 GVIHRDIKAANILVTNTGNVKLCDFGVAALLNQNSSKRST--FVGTPYWMAPEVITEGKY 178

Query: 148 -NEKSNVFSFGAFLFELLAG 166
            + K++++S G  ++E+  G
Sbjct: 179 YDTKADIWSLGITIYEMATG 198

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|132980 cd06649, PKc_MEK2, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

 Score = 42.0 bits (98), Expect = 1e-04
 Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 6/102 (5%)

Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTD 128
           K++  ++  LAYL       I+ R+ K  NIL N     K  DF +S  + +       +
Sbjct: 107 KVSIAVLRGLAYLRE--KHQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS----MAN 160

Query: 129 RVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHI 170
             +GTR Y +PE +     + +S+++S G  L EL  GR  I
Sbjct: 161 SFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPI 202

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 331

>gnl|CDD|173708 cd05617, STKc_aPKC_zeta, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 45/163 (27%), Positives = 72/163 (44%), Gaps = 17/163 (10%)

Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA----PLPRLKI---ASDIVNS 77
           Q S N  L  +  C QT   +  F  +EY    D +F       LP       A++I  +
Sbjct: 51  QASSNPFLVGLHSCFQTTSRL--FLVIEYVNGGDLMFHMQRQRKLPEEHARFYAAEICIA 108

Query: 78  LAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDF-LLSISIPEGETHITTDRVIGTRGY 136
           L +LH    R I+ R+ K  N+L + +   K  D+ +    +  G+   TT    GT  Y
Sbjct: 109 LNFLH---ERGIIYRDLKLDNVLLDADGHIKLTDYGMCKEGLGPGD---TTSTFCGTPNY 162

Query: 137 SAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHD 179
            APE +         + ++ G  +FE++AGR   +D++ D  D
Sbjct: 163 IAPEILRGEEYGFSVDWWALGVLMFEMMAGR-SPFDIITDNPD 204

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways. PKC-zeta also plays a central role in maintaining cell polarity in yeast and mammalian cells. In addition, it affects actin remodeling in muscle cells. Length = 327

>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 48/183 (26%), Positives = 78/183 (42%), Gaps = 38/183 (20%)

Query: 28  HNHILKRIGCCLQTPIPILVFQSVEYGTLRD-----------CIFGAPLPRLKIAS--DI 74
           H +I+  +G C Q     +V +   +G LRD                P P  +  +  D+
Sbjct: 75  HKNIINLLGVCTQEGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDL 134

Query: 75  VNSLAY-----LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR 129
           V S AY     + F   +  + R+   +N+L  E++V K  DF L+  I   + +  T  
Sbjct: 135 V-SFAYQVARGMEFLASKKCIHRDLAARNVLVTEDHVMKIADFGLARDIHHIDYYRKT-- 191

Query: 130 VIGTRG-----YSAPEYISICVLNEKSNVFSFGAFLFEL--LAGR----IHIW---DLLK 175
              T G     + APE +   V   +S+V+SFG  L+E+  L G     I +     LLK
Sbjct: 192 ---TNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFKLLK 248

Query: 176 DTH 178
           + +
Sbjct: 249 EGY 251

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 11/102 (10%)

Query: 65  LPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH 124
           L  L +A D ++SL          I+ R+ K +NIL +EE   K  DF LS    + E  
Sbjct: 104 LAELALALDHLHSLG---------IIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKK 154

Query: 125 ITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
                  GT  Y APE ++     + ++ +SFG  +FE+L G
Sbjct: 155 --AYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTG 194

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4

 Score = 41.6 bits (97), Expect = 2e-04
 Identities = 41/147 (27%), Positives = 65/147 (44%), Gaps = 11/147 (7%)

Query: 24  AQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI------FGAPLPRLKIASDIVNS 77
           A M H H+++ +G CL +P   LV Q + +G L D +       G+ L  L     I   
Sbjct: 64  ASMDHPHLVRLLGVCL-SPTIQLVTQLMPHGCLLDYVHEHKDNIGSQL-LLNWCVQIAKG 121

Query: 78  LAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYS 137
           + YL     R +V R+   +N+L    N  K  DF L+  +   E     D       + 
Sbjct: 122 MMYLE---ERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWM 178

Query: 138 APEYISICVLNEKSNVFSFGAFLFELL 164
           A E I       +S+V+S+G  ++EL+
Sbjct: 179 ALECIHYRKFTHQSDVWSYGVTIWELM 205

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303

>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 5/90 (5%)

Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGT 133
           I  +L YLH    + I+ R+ KTQN+     N+ K  D  ++  + E +  + +  +IGT
Sbjct: 111 IAMALQYLH---EKHILHRDLKTQNVFLTRTNIIKVGDLGIA-RVLENQCDMAST-LIGT 165

Query: 134 RGYSAPEYISICVLNEKSNVFSFGAFLFEL 163
             Y +PE  S    N KS+V++ G  ++E+
Sbjct: 166 PYYMSPELFSNKPYNYKSDVWALGCCVYEM 195

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. Length = 257

>gnl|CDD|173695 cd05604, STKc_SGK3, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 12/107 (11%)

Query: 64  PLPRLKI-ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLL---SISIP 119
           P PR +  A++I ++L YLH      IV R+ K +NIL + +      DF L    I+  
Sbjct: 94  PEPRARFYAAEIASALGYLH---SINIVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQS 150

Query: 120 EGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
           +     TT    GT  Y APE I     +   + +  GA L+E+L G
Sbjct: 151 D-----TTTTFCGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYG 192

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. Length = 325

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 18/152 (11%)

Query: 25  QMSHNHILKRIGCCLQT-PIPILVFQSVEYGTLRDCIF--GAPLPR---LKIASDIVNSL 78
           Q  H +I+K IG C+Q  PI I V + V  G+L   +      L     L+++ D    +
Sbjct: 48  QYDHPNIVKLIGVCVQKQPIYI-VMELVPGGSLLTFLRKKKNRLTVKKLLQMSLDAAAGM 106

Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTR---- 134
            YL     +  + R+   +N L  E NV K  DF +S    EG  +  +D   G +    
Sbjct: 107 EYLE---SKNCIHRDLAARNCLVGENNVLKISDFGMSRE-EEGGIYTVSD---GLKQIPI 159

Query: 135 GYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
            ++APE ++      +S+V+S+G  L+E  + 
Sbjct: 160 KWTAPEALNYGRYTSESDVWSYGILLWETFSL 191

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 43/154 (27%), Positives = 68/154 (44%), Gaps = 23/154 (14%)

Query: 25  QMSHNHILKRIGCCLQ---TPIPILVFQSVEYGTLRDCIFGAPLPR----------LKIA 71
            + H +I+K  G C +     I  L+ + +  G+L++      LPR          LK A
Sbjct: 62  NLYHENIVKYKGICTEDGGNGIK-LIMEFLPSGSLKEY-----LPRNKNKINLKQQLKYA 115

Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITT-DRV 130
             I   + YL     R  V R+   +N+L   E+  K  DF L+ +I   + + T  D +
Sbjct: 116 VQICKGMDYLG---SRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDL 172

Query: 131 IGTRGYSAPEYISICVLNEKSNVFSFGAFLFELL 164
                + APE +        S+V+SFG  L+ELL
Sbjct: 173 DSPVFWYAPECLIQSKFYIASDVWSFGVTLYELL 206

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 284

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 43/165 (26%), Positives = 70/165 (42%), Gaps = 30/165 (18%)

Query: 23  AAQM---SHNHILKRIGCCLQT------PIPILVFQSVEYGTLRDCIF-----GAP--LP 66
           AA M    H +++K IG C +       P P+++   +++G L   +      G P  LP
Sbjct: 52  AACMKDFDHPNVMKLIGVCFEASSLQKIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLP 111

Query: 67  R---LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEG-- 121
               LK   DI   + YL     R  + R+   +N +  E+      DF LS  I  G  
Sbjct: 112 LQTLLKFMVDIALGMEYLS---NRNFIHRDLAARNCMLREDMTVCVADFGLSKKIYSGDY 168

Query: 122 --ETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELL 164
             +  I    V     + A E ++  V   KS+V++FG  ++E+ 
Sbjct: 169 YRQGRIAKMPV----KWIAIESLADRVYTSKSDVWAFGVTMWEIA 209

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|133192 cd05061, PTKc_InsR, Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 7/106 (6%)

Query: 62  GAPLPRLK----IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSIS 117
           G P P L+    +A++I + +AYL+    +  V R+   +N +   +   K  DF ++  
Sbjct: 112 GRPPPTLQEMIQMAAEIADGMAYLN---AKKFVHRDLAARNCMVAHDFTVKIGDFGMTRD 168

Query: 118 IPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL 163
           I E + +    + +    + APE +   V    S+++SFG  L+E+
Sbjct: 169 IYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEI 214

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein metabolism, ion and amino acid transport, cell cycle and proliferation, cell differentiation, gene transcription, and nitric oxide synthesis. Insulin resistance, caused by abnormalities in InsR signaling, has been described in diabetes, hypertension, cardiovascular disease, metabolic syndrome, heart failure, and female infertility. Length = 288

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 40.8 bits (95), Expect = 3e-04
 Identities = 58/221 (26%), Positives = 92/221 (41%), Gaps = 35/221 (15%)

Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----LPRL-KIASDIVNSL 78
           ++ H  +++      + PI I V + +  G+L D + G       LP+L  +A+ I + +
Sbjct: 57  KLRHEKLVQLYAVVSEEPIYI-VTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGM 115

Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA 138
           AY+        V R+ +  NIL  E  V K  DF L+  I + E           + ++A
Sbjct: 116 AYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIK-WTA 171

Query: 139 PEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRF 197
           PE         KS+V+SFG  L EL   GR+           +    N  + + +E  R 
Sbjct: 172 PEAALYGRFTIKSDVWSFGILLTELTTKGRV----------PYPGMVNREVLDQVE--RG 219

Query: 198 TGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT 238
             +P P         E  + LH    L  +C    PE+RPT
Sbjct: 220 YRMPCP--------PECPESLH---DLMCQCWRKEPEERPT 249

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 40.8 bits (95), Expect = 3e-04
 Identities = 40/145 (27%), Positives = 67/145 (46%), Gaps = 13/145 (8%)

Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTL-------RDCIFGAPLPRLKIASDIVNS 77
           Q  H +I+K IG C Q     +V + V  G         +D +    L  +K A D    
Sbjct: 48  QYDHPNIVKLIGVCTQRQPIYIVMELVPGGDFLSFLRKKKDELKTKQL--VKFALDAAAG 105

Query: 78  LAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYS 137
           +AYL     +  + R+   +N L  E NV K  DF +S    +G    +  + I  + ++
Sbjct: 106 MAYLE---SKNCIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIYSSSGLKQIPIK-WT 161

Query: 138 APEYISICVLNEKSNVFSFGAFLFE 162
           APE ++    + +S+V+S+G  L+E
Sbjct: 162 APEALNYGRYSSESDVWSYGILLWE 186

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|133233 cd05102, PTKc_VEGFR3, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

 Score = 40.8 bits (95), Expect = 3e-04
 Identities = 42/161 (26%), Positives = 65/161 (40%), Gaps = 21/161 (13%)

Query: 81  LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPE 140
           + F   R  + R+   +NIL +E NV K  DF L+  I +   ++          + APE
Sbjct: 187 MEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLPLKWMAPE 246

Query: 141 YISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGI 200
            I   V   +S+V+SFG  L+E+ +        L  +   G   NE     L+D   T +
Sbjct: 247 SIFDKVYTTQSDVWSFGVLLWEIFS--------LGASPYPGVQINEEFCQRLKDG--TRM 296

Query: 201 PAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD 241
            AP           E       ++ L C    P++RPT   
Sbjct: 297 RAP-----------ENATPEIYRIMLACWQGDPKERPTFSA 326

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. VEGFR3 preferentially binds the ligands VEGFC and VEGFD. VEGFR3 is essential for lymphatic endothelial cell (EC) development and function. It has been shown to regulate adaptive immunity during corneal transplantation. VEGFR3 is upregulated on blood vascular ECs in pathological conditions such as vascular tumors and the periphery of solid tumors. It plays a role in cancer progression and lymph node metastasis. Missense mutations in the VEGFR3 gene are associated with primary human lymphedema. Length = 338

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 29/153 (18%)

Query: 90  VLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTR---GYSAPEYISICV 146
           V R+   +NIL N   V K  DF LS  + +  +  T    +G +    ++APE I+   
Sbjct: 128 VHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSSLGGKIPIRWTAPEAIAYRK 187

Query: 147 LNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLE-DKRFTGIPAPI 204
               S+V+S+G  ++E+++ G    WD+           N+ + N +E D R   +P P+
Sbjct: 188 FTSASDVWSYGIVMWEVMSYGERPYWDMS----------NQDVINAIEQDYR---LPPPM 234

Query: 205 IVQDIPCIEKEQQLHASAQLTLECVNNSPEDRP 237
              D P       LH   QL L+C       RP
Sbjct: 235 ---DCPTA-----LH---QLMLDCWQKDRNARP 256

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

 Score = 40.7 bits (95), Expect = 3e-04
 Identities = 44/152 (28%), Positives = 67/152 (44%), Gaps = 29/152 (19%)

Query: 90  VLRNFKTQNILFNEENVAKWFDFLLSISI---PEGETHITTDRVIGTRGYSAPEYISICV 146
           V R+   +NIL N   V K  DF LS  +   PE   + T    I  R ++APE I+   
Sbjct: 128 VHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEA-AYTTRGGKIPIR-WTAPEAIAYRK 185

Query: 147 LNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPII 205
               S+V+S+G  ++E+++ G    W++            + +K   E  R   +PAP+ 
Sbjct: 186 FTSASDVWSYGIVMWEVMSYGERPYWEMSN---------QDVIKAIEEGYR---LPAPM- 232

Query: 206 VQDIPCIEKEQQLHASAQLTLECVNNSPEDRP 237
             D P       LH   QL L+C      +RP
Sbjct: 233 --DCPAA-----LH---QLMLDCWQKDRNERP 254

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 40.4 bits (94), Expect = 4e-04
 Identities = 41/166 (24%), Positives = 66/166 (39%), Gaps = 26/166 (15%)

Query: 26  MSHNHILKRIGCCLQTPIPILVFQSVEYGTLR--------DCIF---GAPLPRLK----- 69
           + H HI+K  G C++    I+VF+ +++G L         D +    G     L      
Sbjct: 64  LQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQML 123

Query: 70  -IASDIVNSLAYL---HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHI 125
            IA  I   + YL   HF      V R+  T+N L  E  + K  DF +S  +   + + 
Sbjct: 124 HIAQQIAAGMVYLASQHF------VHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYR 177

Query: 126 TTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIW 171
                +    +  PE I       +S+V+S G  L+E+       W
Sbjct: 178 VGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPW 223

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

>gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 12/93 (12%)

Query: 78  LAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLS------ISIPEGETHITTDRVI 131
           L  +H    + ++ R+ K+ NIL     + K  DF  S      +S   G T        
Sbjct: 153 LLAVHHVHSKHMIHRDIKSANILLCSNGLVKLGDFGFSKMYAATVSDDVGRT------FC 206

Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELL 164
           GT  Y APE       ++K+++FS G  L+ELL
Sbjct: 207 GTPYYVAPEIWRRKPYSKKADMFSLGVLLYELL 239

Length = 496

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 38/158 (24%), Positives = 70/158 (44%), Gaps = 16/158 (10%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEY---GTLRDCI--FGAPLPRLKIA 71
           IN I       H +I+      L   +   ++  +EY   G+L D I      +   +IA
Sbjct: 63  INEILIMKDCKHPNIVDYYDSYL---VGDELWVVMEYMDGGSLTDIITQNFVRMNEPQIA 119

Query: 72  S---DIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTD 128
               +++  L YLH    + ++ R+ K+ NIL +++   K  DF  +  + + ++   + 
Sbjct: 120 YVCREVLQGLEYLH---SQNVIHRDIKSDNILLSKDGSVKLADFGFAAQLTKEKSKRNS- 175

Query: 129 RVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
            V+GT  + APE I       K +++S G    E+  G
Sbjct: 176 -VVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEG 212

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1

 Score = 40.4 bits (94), Expect = 4e-04
 Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 10/100 (10%)

Query: 68  LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITT 127
           L+ ASD+   + YL     +  + R+   +N+L  E   +K  DF LS     GE  +  
Sbjct: 122 LQFASDVATGMQYLS---EKQFIHRDLAARNVLVGENLASKIADFGLS----RGE-EVYV 173

Query: 128 DRVIGTRG--YSAPEYISICVLNEKSNVFSFGAFLFELLA 165
            + +G     + A E ++  V   KS+V+SFG  L+E+++
Sbjct: 174 KKTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVS 213

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297

>gnl|CDD|132950 cd06619, PKc_MKK5, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 7/99 (7%)

Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTD 128
           +IA  +V  L YL   +   I+ R+ K  N+L N     K  DF +S  +     +    
Sbjct: 99  RIAVAVVKGLTYL---WSLKILHRDVKPSNMLVNTRGQVKLCDFGVSTQL----VNSIAK 151

Query: 129 RVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
             +GT  Y APE IS       S+V+S G    EL  GR
Sbjct: 152 TYVGTNAYMAPERISGEQYGIHSDVWSLGISFMELALGR 190

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that phosphorylates its downstream target, extracellular signal-regulated kinase 5 (ERK5), on specific threonine and tyrosine residues. MKK5 is activated by MEKK2 and MEKK3 in response to mitogenic and stress stimuli. The ERK5 cascade promotes cell proliferation, differentiation, neuronal survival, and neuroprotection. This cascade plays an essential role in heart development. Mice deficient in either ERK5 or MKK5 die around embryonic day 10 due to cardiovascular defects including underdevelopment of the myocardium. In addition, MKK5 is associated with metastasis and unfavorable prognosis in prostate cancer. Length = 279

>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

 Score = 40.5 bits (94), Expect = 4e-04
 Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 2/121 (1%)

Query: 46  LVFQSVEYGTLRDCIFGAPLPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEEN 105
           +V + +  G+L D +    +   +IA+     L  L F     ++ R+ K+ NIL   + 
Sbjct: 93  VVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALDFLHSNQVIHRDIKSDNILLGMDG 152

Query: 106 VAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA 165
             K  DF     I   ++  +T  ++GT  + APE ++      K +++S G    E++ 
Sbjct: 153 SVKLTDFGFCAQITPEQSKRST--MVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVE 210

Query: 166 G 166
           G
Sbjct: 211 G 211

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK3 is highly expressed in the brain. It is implicated in neuronal plasticity, synapse formation, dendritic spine morphogenesis, cell cycle progression, neuronal migration, and apoptosis. Inactivating mutations in the PAK3 gene cause X-linked non-syndromic mental retardation, the severity of which depends on the site of the mutation. Length = 297

>gnl|CDD|143382 cd07877, STKc_p38alpha_MAPK14, Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

 Score = 40.4 bits (94), Expect = 4e-04
 Identities = 41/152 (26%), Positives = 64/152 (42%), Gaps = 21/152 (13%)

Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGT 133
           I+  L Y+H      I+ R+ K  N+  NE+   K  DF L+    +  T       + T
Sbjct: 129 ILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTG-----YVAT 180

Query: 134 RGYSAPE-YISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYL 192
           R Y APE  ++    N+  +++S G  + ELL GR     L   T DH     + LK  L
Sbjct: 181 RWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT----LFPGT-DH----IDQLKLIL 231

Query: 193 EDKRFTGIPAPIIVQDIPCIEKEQQLHASAQL 224
              R  G P   +++ I        + +  Q+
Sbjct: 232 ---RLVGTPGAELLKKISSESARNYIQSLTQM 260

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14, is expressed in most tissues and is the major isoform involved in the immune and inflammatory response. It is the central p38 MAPK involved in myogenesis. It plays a role in regulating cell cycle check-point transition and promoting cell differentiation. p38alpha also regulates cell proliferation and death through crosstalk with the JNK pathway. Its substrates include MAPK activated protein kinase 2 (MK2), MK5, and the transcription factors ATF2 and Mitf. Length = 345

>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 35/102 (34%), Positives = 44/102 (43%), Gaps = 7/102 (6%)

Query: 67  RLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHIT 126
           R+ IA +IV +L +LH      I+ R+ K +NIL + E      DF LS      E    
Sbjct: 108 RVYIA-EIVLALDHLH---QLGIIYRDIKLENILLDSEGHVVLTDFGLSKEFLAEEEERA 163

Query: 127 TDRVIGTRGYSAPEYISICVLNEKSNV--FSFGAFLFELLAG 166
                GT  Y APE I          V  +S G   FELL G
Sbjct: 164 YS-FCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTG 204

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) in the C-terminal extension of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSKs are predominantly nuclear proteins. They are widely expressed in many tissues including heart, brain, lung, liver, kidney, and pancreas. There are two isoforms of MSK, called MSK1 and MSK2. Length = 288

>gnl|CDD|88519 cd05618, STKc_aPKC_iota, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

 Score = 40.4 bits (94), Expect = 4e-04
 Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 16/151 (10%)

Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA----PLPRLKI---ASDIVNS 77
           Q S++  L  +  C QT   +  F  +EY    D +F       LP       +++I  +
Sbjct: 51  QASNHPFLVGLHSCFQTESRL--FFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLA 108

Query: 78  LAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDF-LLSISIPEGETHITTDRVIGTRGY 136
           L YLH    R I+ R+ K  N+L + E   K  D+ +    +  G+T   T    GT  Y
Sbjct: 109 LNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDT---TSTFCGTPNY 162

Query: 137 SAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
            APE +         + ++ G  +FE++AGR
Sbjct: 163 IAPEILRGEDYGFSVDWWALGVLMFEMMAGR 193

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target of tumor-specific gene amplification in many human cancers, and has been identified as a human oncogene. In addition to its role in transformed growth, PKC-iota also promotes invasion, chemoresistance, and tumor cell survival. Expression profiling of PKC-iota is a prognostic marker of poor clinical outcome in several human cancers. PKC-iota also plays a role in establishing cell polarity, and has critical embryonic functions. Length = 329

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 52/230 (22%), Positives = 90/230 (39%), Gaps = 37/230 (16%)

Query: 20  ITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEY---GTLRDCI-----FGAPLPRLKIA 71
           I     + H +I++ +G    T   + +F  +EY   G++  C+     F   L R    
Sbjct: 59  IETLKDLDHLNIVQYLGF-ETTEEYLSIF--LEYVPGGSIGSCLRTYGRFEEQLVRF-FT 114

Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
             ++  LAYLH    + I+ R+ K  N+L + + + K  DF +S    +   +     + 
Sbjct: 115 EQVLEGLAYLH---SKGILHRDLKADNLLVDADGICKISDFGISKKSDDIYDNDQNMSMQ 171

Query: 132 GTRGYSAPEYISI--CVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLK 189
           G+  + APE I       + K +++S G  + E+ AGR   W    D       F     
Sbjct: 172 GSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGR-RPW---SDEEAIAAMF----- 222

Query: 190 NYLEDKRFTGIPAPIIVQDI-PCIEKEQQLHASAQLTLECVNNSPEDRPT 238
                K      AP I  D+   +        +      C   +P++RPT
Sbjct: 223 -----KLGNKRSAPPIPPDVSMNLSPV-----ALDFLNACFTINPDNRPT 262

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase; Provisional

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 12/104 (11%)

Query: 70  IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR 129
           +A  I++ +AYLH    R IV R+ K  N+L N     K  DF   +S    +T    + 
Sbjct: 173 VARQILSGIAYLH---RRHIVHRDIKPSNLLINSAKNVKIADF--GVSRILAQTMDPCNS 227

Query: 130 VIGTRGYSAPEYISICVLNE------KSNVFSFGAFLFELLAGR 167
            +GT  Y +PE I+   LN         +++S G  + E   GR
Sbjct: 228 SVGTIAYMSPERINT-DLNHGAYDGYAGDIWSLGVSILEFYLGR 270

Length = 353

>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 8/103 (7%)

Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHIT-T 127
           KI+  ++  L YL       I+ R+ K  NIL N     K  DF +S     G+   +  
Sbjct: 103 KISIAVLRGLTYLRE--KHKIMHRDVKPSNILVNSRGEIKLCDFGVS-----GQLIDSMA 155

Query: 128 DRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHI 170
           +  +GTR Y +PE +       +S+++S G  L E+  GR  I
Sbjct: 156 NSFVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYPI 198

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the downstream targets, ERK(extracellular signal-regulated kinase) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1/2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. This cascade has also been implicated in synaptic plasticity, migration, morphological determination, and stress response immunological reactions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1/2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 308

>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

 Score = 39.8 bits (93), Expect = 6e-04
 Identities = 31/145 (21%), Positives = 62/145 (42%), Gaps = 9/145 (6%)

Query: 27  SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI------FGAPLPRLKIASDIVNSLAY 80
           +H +I+  +G C      +++ +   YG L + +      F      L  +  +   +A+
Sbjct: 97  NHENIVNLLGACTIGGPILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAF 156

Query: 81  LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPE 140
           L     +  + R+   +N+L     + K  DF L+  I     ++          + APE
Sbjct: 157 LAS---KNCIHRDLAARNVLLTHGKIVKICDFGLARDIMNDSNYVVKGNARLPVKWMAPE 213

Query: 141 YISICVLNEKSNVFSFGAFLFELLA 165
            I  CV   +S+V+S+G  L+E+ +
Sbjct: 214 SIFNCVYTFESDVWSYGILLWEIFS 238

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR subfamily receptors are important in the development of a variety of cells. PDGFRs are expressed in a many cells including fibroblasts, neurons, endometrial cells, mammary epithelial cells, and vascular smooth muscle cells. PDGFR signaling is critical in normal embryonic development, angiogenesis, and wound healing. PDGFRs transduce mitogenic signals for connective tissue cells and are important for cell shape and motility. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. Mammalian FLT3 plays an important role in the survival, proliferation, and differentiation of stem cells. Length = 302

>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

 Score = 40.0 bits (93), Expect = 6e-04
 Identities = 51/230 (22%), Positives = 87/230 (37%), Gaps = 33/230 (14%)

Query: 16  CINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDIV 75
           CI  I    Q++H +++K     ++     +V +  + G L   I      +  I    V
Sbjct: 49  CIKEIDLLKQLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPEKTV 108

Query: 76  --------NSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITT 127
                   ++L ++H    R ++ R+ K  N+      V K  D  L        T    
Sbjct: 109 WKYFVQLCSALEHMH---SRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTT--AA 163

Query: 128 DRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEY 187
             ++GT  Y +PE I     N KS+++S G  L+E+ A +               F+ + 
Sbjct: 164 HSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQ-------------SPFYGDK 210

Query: 188 LKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRP 237
           +  Y   K+      P     +P     ++L    QL   C+N  PE RP
Sbjct: 211 MNLYSLCKKIEQCDYP----PLPSDHYSEELR---QLVNMCINPDPEKRP 253

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 40/161 (24%), Positives = 65/161 (40%), Gaps = 15/161 (9%)

Query: 15  SCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI-----FGAPLPR-- 67
             +N I   A ++H +I+      L      +V +   +G L   I         +P   
Sbjct: 45  DAVNEIRILASVNHPNIISYKEAFLDGNKLCIVMEYAPFGDLSKAISKRKKKRKLIPEQE 104

Query: 68  -LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHIT 126
             +I   ++  L  LH    + I+ R+ K+ NIL    ++ K  D  L IS    +    
Sbjct: 105 IWRIFIQLLRGLQALH---EQKILHRDLKSANILLVANDLVKIGD--LGISKVLKKNMAK 159

Query: 127 TDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           T   IGT  Y APE       + KS+++S G  L+E+    
Sbjct: 160 T--QIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFA 198

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine Kinases

 Score = 39.7 bits (92), Expect = 6e-04
 Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 10/100 (10%)

Query: 68  LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITT 127
           L  A+D+   + YL     +  + R+   +NIL  E  VAK  DF LS     G+  +  
Sbjct: 115 LHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVAKIADFGLS----RGQ-EVYV 166

Query: 128 DRVIGTRG--YSAPEYISICVLNEKSNVFSFGAFLFELLA 165
            + +G     + A E ++  V    S+V+S+G  L+E+++
Sbjct: 167 KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVS 206

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific ligand has been identified for Tie1. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. In vivo studies of Tie1 show that it is critical in vascular development. Length = 270

>gnl|CDD|133174 cd05042, PTKc_Aatyk, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

 Score = 39.9 bits (93), Expect = 6e-04
 Identities = 31/154 (20%), Positives = 67/154 (43%), Gaps = 19/154 (12%)

Query: 26  MSHNHILKRIGCCLQTPIPILVFQSVEYGTL-------RDCIFGAPLPRL--KIASDIVN 76
           ++H ++L+ +G C+++   +LV +    G L       R  +       +  ++A ++ +
Sbjct: 52  LNHPNVLQCLGQCIESIPYLLVLEFCPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEVAS 111

Query: 77  SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGY 136
            L +LH       +  +   +N     +   K  D+ L++     + +IT D       +
Sbjct: 112 GLLWLH---QADFIHSDLALRNCQLTADLSVKIGDYGLALEQYPEDYYITKDCHAVPLRW 168

Query: 137 SAPEYISICVLN-------EKSNVFSFGAFLFEL 163
            APE + I   +       +KSN++S G  ++EL
Sbjct: 169 LAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWEL 202

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kinases based on overall sequence similarity and the phylogenetic tree. However, analysis of catalytic residues suggests that Aatyk proteins may be multispecific kinases, functioning also as serine/threonine kinases. They are involved in neural differentiation, nerve growth factor (NGF) signaling, apoptosis, and spermatogenesis. Length = 269

>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 9/103 (8%)

Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTD 128
           KIA  IV +L YLH      ++ R+ K  N+L N     K  DF +S  + +    +   
Sbjct: 107 KIAVSIVKALEYLHSKLS--VIHRDVKPSNVLINRNGQVKLCDFGISGYLVDS---VAKT 161

Query: 129 RVIGTRGYSAPEYI----SICVLNEKSNVFSFGAFLFELLAGR 167
              G + Y APE I    +    + KS+V+S G  + EL  GR
Sbjct: 162 IDAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGR 204

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma. Length = 283

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 39.5 bits (92), Expect = 7e-04
 Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 17/148 (11%)

Query: 25  QMSHNHILKRIGCCL-QTPIPILVFQSVEYGT-------LRDCIFG-APLPRLKIASDIV 75
           ++SH  +++  G C  Q PI I+     EY +       LR+      P   L++  D+ 
Sbjct: 55  KLSHEKLVQLYGVCTKQRPIYIVT----EYMSNGCLLNYLREHGKRFQPSQLLEMCKDVC 110

Query: 76  NSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRG 135
             +AYL     +  + R+   +N L +++   K  DF LS  + + E   +       R 
Sbjct: 111 EGMAYLE---SKQFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEYTSSVGSKFPVR- 166

Query: 136 YSAPEYISICVLNEKSNVFSFGAFLFEL 163
           +S PE +     + KS+V++FG  ++E+
Sbjct: 167 WSPPEVLLYSKFSSKSDVWAFGVLMWEV 194

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

 Score = 39.6 bits (92), Expect = 7e-04
 Identities = 41/177 (23%), Positives = 76/177 (42%), Gaps = 26/177 (14%)

Query: 28  HNHILKRIGCCLQTPIPILVFQSVEYGTLRD------------CIFGAPLPRLKIASDIV 75
           H +I+  +G C Q     ++ +    G LR+            C     +P  +++   +
Sbjct: 83  HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDL 142

Query: 76  NSLAY-----LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRV 130
            S AY     + +   +  + R+   +N+L  E+NV K  DF L+  I   + +  T   
Sbjct: 143 VSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNG 202

Query: 131 IGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL--LAGRIH-------IWDLLKDTH 178
                + APE +   +   +S+V+SFG  L+E+  L G  +       ++ LLK+ H
Sbjct: 203 RLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGH 259

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Alternative splicing of FGFR1 transcripts produces a variety of isoforms, which are differentially expressed in cells. FGFR1 binds the ligands, FGF1 and FGF2, with high affinity and has also been reported to bind FGF4, FGF6, and FGF9. FGFR1 signaling is critical in the control of cell migration during embryo development. It promotes cell proliferation in fibroblasts. Nuclear FGFR1 plays a role in the regulation of transcription. Mutations, insertions or deletions of FGFR1 have been identified in patients with Kallman's syndrome (KS), an inherited disorder characterized by hypogonadotropic hypogonadism and loss of olfaction. Aberrant FGFR1 expression has been found in some human cancers including 8P11 myeloproliferative syndrome (EMS), breast cancer, and pancreatic adenocarcinoma. Length = 307

>gnl|CDD|173710 cd05620, STKc_nPKC_delta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

 Score = 39.9 bits (93), Expect = 7e-04
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 5/97 (5%)

Query: 71  ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRV 130
           A++IV  L +LH    + I+ R+ K  N++ + +   K  DF +      G+   +T   
Sbjct: 102 AAEIVCGLQFLH---SKGIIYRDLKLDNVMLDRDGHIKIADFGMCKENVFGDNRAST--F 156

Query: 131 IGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
            GT  Y APE +         + +SFG  L+E+L G+
Sbjct: 157 CGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQ 193

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. It slows down cell proliferation, inducing cell cycle arrest and enhancing cell differentiation. PKC-delta is also involved in the regulation of transcription as well as immune and inflammatory responses. It plays a central role in the genotoxic stress response that leads to DNA damaged-induced apoptosis. Length = 316

>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

 Score = 39.6 bits (92), Expect = 8e-04
 Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 6/102 (5%)

Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTD 128
           K++  ++  L YL       I+ R+ K  NIL N     K  DF +S  + +       +
Sbjct: 107 KVSIAVIKGLTYLRE--KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS----MAN 160

Query: 129 RVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHI 170
             +GTR Y +PE +     + +S+++S G  L E+  GR  I
Sbjct: 161 SFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYPI 202

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. MEK1 also plays a role in cell cycle control. Length = 333

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 39.4 bits (92), Expect = 8e-04
 Identities = 46/170 (27%), Positives = 74/170 (43%), Gaps = 33/170 (19%)

Query: 24  AQMSHNHILKRIG-CCLQTPIPILVFQSVEYGTL----RDC-----------------IF 61
           A+  H +I+K +G C +  P+  L+F+ + YG L    R                     
Sbjct: 63  AEFDHPNIVKLLGVCAVGKPM-CLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCG 121

Query: 62  GAPLP-----RLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSI 116
             PLP     +L IA  +   +AYL     R  V R+  T+N L  E  V K  DF LS 
Sbjct: 122 LNPLPLSCTEQLCIAKQVAAGMAYLS---ERKFVHRDLATRNCLVGENMVVKIADFGLSR 178

Query: 117 SIPEGETH-ITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA 165
           +I   + +  + +  I  R +  PE I       +S+V+++G  L+E+ +
Sbjct: 179 NIYSADYYKASENDAIPIR-WMPPESIFYNRYTTESDVWAYGVVLWEIFS 227

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

 Score = 39.4 bits (92), Expect = 8e-04
 Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 16/142 (11%)

Query: 57  RDCIFGAPLPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDF-LLS 115
           R+ +F     R    ++IV++L YLH      +V R+ K +N++ +++   K  DF L  
Sbjct: 88  RERVFSEDRARF-YGAEIVSALGYLH---SCDVVYRDLKLENLMLDKDGHIKITDFGLCK 143

Query: 116 ISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLK 175
             I +G    T     GT  Y APE +         + +  G  ++E++ GR+  ++   
Sbjct: 144 EGISDGA---TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYN--- 197

Query: 176 DTHDHGCFFNEYLKNYLEDKRF 197
              DH   F   L   +E+ RF
Sbjct: 198 --QDHEKLFELIL---MEEIRF 214

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having been implicated in tumor initiation, progression, and metastasis. Length = 323

>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

 Score = 39.4 bits (92), Expect = 8e-04
 Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 5/95 (5%)

Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTD 128
            I   +V +L YLH    + IV R+    NI+  E++     DF L+      E+ +T+ 
Sbjct: 117 NIFVQMVLALRYLHK--EKRIVHRDLTPNNIMLGEDDKVTITDFGLAKQKQP-ESKLTS- 172

Query: 129 RVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL 163
            V+GT  YS PE +      EK++V++FG  L+++
Sbjct: 173 -VVGTILYSCPEIVKNEPYGEKADVWAFGCILYQM 206

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. Length = 269

>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

 Score = 39.3 bits (91), Expect = 8e-04
 Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 4/122 (3%)

Query: 46  LVFQSVEYGTLRDCIFGAPLPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEEN 105
           +V + +  G+L D +    +   +IA+     L  L F     ++ R+ K+ NIL   + 
Sbjct: 94  VVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDG 153

Query: 106 VAKWFDFLLSISI-PEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELL 164
             K  DF     I PE         ++GT  + APE ++      K +++S G    E++
Sbjct: 154 SVKLTDFGFCAQITPEQSKR---STMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMI 210

Query: 165 AG 166
            G
Sbjct: 211 EG 212

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296

>gnl|CDD|173693 cd05602, STKc_SGK1, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

 Score = 39.6 bits (92), Expect = 8e-04
 Identities = 36/114 (31%), Positives = 52/114 (45%), Gaps = 6/114 (5%)

Query: 53  YGTLRDCIFGAPLPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDF 112
           Y   R+  F  P  R   A++I ++L YLH      IV R+ K +NIL + +      DF
Sbjct: 85  YHLQRERCFLEPRARF-YAAEIASALGYLH---SLNIVYRDLKPENILLDSQGHIVLTDF 140

Query: 113 LLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
            L       E + TT    GT  Y APE +     +   + +  GA L+E+L G
Sbjct: 141 GLCKE--NIEHNGTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYG 192

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt sensitivity, memory consolidation, and cardiac repolarization. A common SGK1 variant is associated with increased blood pressure and body weight. SGK1 may also contribute to tumor growth, neurodegeneration, fibrosing disease, and ischemia. Length = 325

>gnl|CDD|173682 cd05591, STKc_nPKC_epsilon, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

 Score = 39.4 bits (92), Expect = 8e-04
 Identities = 41/150 (27%), Positives = 66/150 (44%), Gaps = 15/150 (10%)

Query: 26  MSHNH-ILKRIGCCLQTPIPIL-VFQSVEYGTL-----RDCIFGAPLPRLKIASDIVNSL 78
           ++  H  L  + CC QT   +  V + V  G L     R   F  P  R   A+++  +L
Sbjct: 51  LAAKHPFLTALHCCFQTKDRLFFVMEYVNGGDLMFQIQRSRKFDEPRSRF-YAAEVTLAL 109

Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDF-LLSISIPEGETHITTDRVIGTRGYS 137
            +LH      ++ R+ K  NIL + E   K  DF +    I  G   +TT    GT  Y 
Sbjct: 110 MFLH---RHGVIYRDLKLDNILLDAEGHCKLADFGMCKEGILNG---VTTTTFCGTPDYI 163

Query: 138 APEYISICVLNEKSNVFSFGAFLFELLAGR 167
           APE +         + ++ G  ++E++AG+
Sbjct: 164 APEILQELEYGPSVDWWALGVLMYEMMAGQ 193

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to neoplastic transformation depending on the cell type. It contributes to oncogenesis by inducing disordered cell growth and inhibiting cell death. It also plays a role in tumor invasion and metastasis. PKC-epsilon has also been found to confer cardioprotection against ischemia and reperfusion-mediated damage. Other cellular functions include the regulation of gene expression, cell adhesion, and cell motility. Length = 321

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 39.4 bits (93), Expect = 0.001
 Identities = 37/137 (27%), Positives = 56/137 (40%), Gaps = 29/137 (21%)

Query: 78  LAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLS--ISIPEGETHITTDRVIGTRG 135
           L YLH      ++ R+ K  NIL N     K  DF L+  +   E E    T+ V+ TR 
Sbjct: 116 LKYLHSA---NVIHRDLKPSNILVNSNCDLKICDFGLARGVDPDEDEKGFLTEYVV-TRW 171

Query: 136 YSAPEYISICVLNEKS-----NVFSFGAFLFELLAGR--------IHIWDLLKDT----- 177
           Y APE +    L+        +++S G    ELL  +        I   +L+ +      
Sbjct: 172 YRAPELL----LSSSRYTKAIDIWSVGCIFAELLTRKPLFPGRDYIDQLNLIVEVLGTPS 227

Query: 178 -HDHGCFFNEYLKNYLE 193
             D     +E  +NYL+
Sbjct: 228 EEDLKFITSEKARNYLK 244

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|173666 cd05575, STKc_SGK, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 6/104 (5%)

Query: 64  PLPRLKI-ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGE 122
           P PR +  A++I ++L YLH      I+ R+ K +NIL + +      DF L     E  
Sbjct: 94  PEPRARFYAAEIASALGYLH---SLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGIEHS 150

Query: 123 THITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
              TT    GT  Y APE +     +   + +  GA L+E+L G
Sbjct: 151 K--TTSTFCGTPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYG 192

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell proliferation, and apoptosis. Length = 323

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score = 39.1 bits (91), Expect = 0.001
 Identities = 35/150 (23%), Positives = 65/150 (43%), Gaps = 2/150 (1%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDIVN 76
           IN I    +  H +I+  +   L      +V + +  G+L D +    +   +IA+    
Sbjct: 64  INEILVMRENKHPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRE 123

Query: 77  SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGY 136
            L  L F     ++ R+ K+ NIL   +   K  DF     I   ++  +T  ++GT  +
Sbjct: 124 CLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRST--MVGTPYW 181

Query: 137 SAPEYISICVLNEKSNVFSFGAFLFELLAG 166
            APE ++      K +++S G    E++ G
Sbjct: 182 MAPEVVTRKAYGPKVDIWSLGIMAIEMVEG 211

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

>gnl|CDD|133234 cd05103, PTKc_VEGFR2, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

 Score = 39.2 bits (91), Expect = 0.001
 Identities = 26/85 (30%), Positives = 42/85 (49%)

Query: 81  LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPE 140
           + F   R  + R+   +NIL +E NV K  DF L+  I +   ++          + APE
Sbjct: 192 MEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPE 251

Query: 141 YISICVLNEKSNVFSFGAFLFELLA 165
            I   V   +S+V+SFG  L+E+ +
Sbjct: 252 TIFDRVYTIQSDVWSFGVLLWEIFS 276

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosphorylation and activation. VEGFR2 binds the ligands VEGFA, VEGFC, VEGFD and VEGFE. VEGFR2 signaling is implicated in all aspects of normal and pathological vascular endothelial cell biology. It induces a variety of cellular effects including migration, survival, and proliferation. It is critical in regulating embryonic vascular development and angiogenesis. VEGFR2 is the major signal transducer in pathological angiogenesis including cancer and diabetic retinopathy, and is a target for inhibition in cancer therapy. Length = 343

>gnl|CDD|173679 cd05588, STKc_aPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 28/157 (17%)

Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKI--------ASDIVN 76
             S++  L  +  C QT   +  F  +E+ +  D +F     R K+        +++I  
Sbjct: 51  TASNHPFLVGLHSCFQTESRL--FFVIEFVSGGDLMFHMQRQR-KLPEEHARFYSAEISL 107

Query: 77  SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDF-LLSISIPEGETHITTDRVIGTRG 135
           +L +LH    R I+ R+ K  N+L + E   K  D+ +    I  G+   TT    GT  
Sbjct: 108 ALNFLH---ERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIRPGD---TTSTFCGTPN 161

Query: 136 YSAPEYISICVLNEKSNVFS-----FGAFLFELLAGR 167
           Y APE     +L  +   FS      G  +FE++AGR
Sbjct: 162 YIAPE-----ILRGEDYGFSVDWWALGVLMFEMMAGR 193

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions including proliferation, migration, apoptosis, polarity maintenance and cytoskeletal regulation. They also play a critical role in the regulation of glucose metabolism and in the pathogenesis of type 2 diabetes. Length = 329

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 38.6 bits (90), Expect = 0.001
 Identities = 38/160 (23%), Positives = 66/160 (41%), Gaps = 17/160 (10%)

Query: 16  CINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIF-----GAPLPRLKI 70
           C+  I    Q+ H +++K +   ++     +V +  + G L   I         +P   I
Sbjct: 49  CLKEIDLLKQLDHPNVIKYLASFIENNELNIVLELADAGDLSRMIKHFKKQKRLIPERTI 108

Query: 71  ASDIV---NSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLS--ISIPEGETHI 125
               V   ++L ++H    + I+ R+ K  N+      V K  D  L    S      H 
Sbjct: 109 WKYFVQLCSALEHMH---SKRIMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAH- 164

Query: 126 TTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA 165
               ++GT  Y +PE I     N KS+++S G  L+E+ A
Sbjct: 165 ---SLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAA 201

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|173694 cd05603, STKc_SGK2, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

 Score = 38.8 bits (90), Expect = 0.001
 Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 8/111 (7%)

Query: 57  RDCIFGAPLPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSI 116
           R+  F  P  R   A+++ +++ YLH      I+ R+ K +NIL + +      DF L  
Sbjct: 89  RERCFLEPRARF-YAAEVASAIGYLH---SLNIIYRDLKPENILLDSQGHVVLTDFGLC- 143

Query: 117 SIPEG-ETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
              EG E   TT    GT  Y APE +     +   + +  GA L+E+L G
Sbjct: 144 --KEGVEPEETTSTFCGTPEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYG 192

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. Length = 321

>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

 Score = 38.9 bits (90), Expect = 0.001
 Identities = 48/176 (27%), Positives = 76/176 (43%), Gaps = 29/176 (16%)

Query: 1   MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEY--GTLRD 58
           M + G + +   +   I  + +  Q+ H + ++  GC L+     LV   +EY  G+  D
Sbjct: 54  MSYSGKQTNE-KWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWLV---MEYCLGSASD 109

Query: 59  C--IFGAPLPRLKIAS---DIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDF- 112
              +   PL  ++IA+     +  LAYLH      ++ R+ K  NIL  E    K  DF 
Sbjct: 110 LLEVHKKPLQEVEIAAITHGALQGLAYLH---SHNMIHRDIKAGNILLTEPGQVKLADFG 166

Query: 113 LLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNE-----KSNVFSFGAFLFEL 163
             S S P        +  +GT  + APE   I  ++E     K +V+S G    EL
Sbjct: 167 SASKSSP-------ANSFVGTPYWMAPEV--ILAMDEGQYDGKVDVWSLGITCIEL 213

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pathway. TAO3 is upregulated in retinal ganglion cells after axotomy, and may play a role in apoptosis. Length = 313

>gnl|CDD|173667 cd05576, STKc_RPK118_like, Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 36/126 (28%), Positives = 52/126 (41%), Gaps = 12/126 (9%)

Query: 46  LVFQSVEYGTLRDCIFG-APLPRLKI---ASDIVNSLAYLHFGFPRPIVLRNFKTQNILF 101
           LV Q  E G L   I     +P   +   A+++V +L  LH      IV R+    NIL 
Sbjct: 62  LVLQHAEGGKLWSHISKFLNIPEECVKRWAAEMVVALDALH---REGIVCRDLNPNNILL 118

Query: 102 NEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLF 161
           ++    +   F     + +     + D       Y APE   I    E  + +S GA LF
Sbjct: 119 DDRGHIQLTYFSRWSEVED-----SCDGEAVENMYCAPEVGGISEETEACDWWSLGAILF 173

Query: 162 ELLAGR 167
           ELL G+
Sbjct: 174 ELLTGK 179

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. RPK118 also binds the antioxidant peroxiredoxin-3 (PRDX3). RPK118 may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Length = 237

>gnl|CDD|133232 cd05101, PTKc_FGFR2, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

 Score = 38.5 bits (89), Expect = 0.002
 Identities = 40/177 (22%), Positives = 74/177 (41%), Gaps = 26/177 (14%)

Query: 28  HNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDIVN----------- 76
           H +I+  +G C Q     ++ +    G LR+ +     P ++ + DI             
Sbjct: 80  HKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDL 139

Query: 77  -SLAY-----LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRV 130
            S  Y     + +   +  + R+   +N+L  E NV K  DF L+  +   + +  T   
Sbjct: 140 VSCTYQVARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDVNNIDYYKKTTNG 199

Query: 131 IGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL--LAGRIH-------IWDLLKDTH 178
                + APE +   V   +S+V+SFG  ++E+  L G  +       ++ LLK+ H
Sbjct: 200 RLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGH 256

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. There are many splice variants of FGFR2 which show differential expression and binding to FGF ligands. Disruption of either FGFR2 or FGFR2b is lethal in mice, due to defects in the placenta or severe impairment of tissue development including lung, limb, and thyroid, respectively. Disruption of FGFR2c in mice results in defective bone and skull development. Genetic alterations of FGFR2 are associated with many human skeletal disorders including Apert syndrome, Crouzon syndrome, Jackson-Weiss syndrome, and Pfeiffer syndrome. Length = 304

>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

 Score = 38.5 bits (89), Expect = 0.002
 Identities = 31/128 (24%), Positives = 64/128 (50%), Gaps = 16/128 (12%)

Query: 46  LVFQSVEYGTLRDCIFGAPLPRLKIAS---DIVNSLAYLHFGFPRPIVLRNFKTQNILFN 102
           +V + +E G L D +    +   +IA+    ++ +L+YLH    + ++ R+ K+ +IL  
Sbjct: 96  VVMEFLEGGALTDIVTHTRMNEEQIATVCLSVLRALSYLH---NQGVIHRDIKSDSILLT 152

Query: 103 EENVAKWFDF----LLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGA 158
            +   K  DF     +S  +P+ ++      ++GT  + APE IS      + +++S G 
Sbjct: 153 SDGRIKLSDFGFCAQVSKEVPKRKS------LVGTPYWMAPEVISRLPYGTEVDIWSLGI 206

Query: 159 FLFELLAG 166
            + E++ G
Sbjct: 207 MVIEMIDG 214

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is required for normal levels of locomotion and activity, and for learning and memory. PAK5 cooperates with Inca (induced in neural crest by AP2) in the regulation of cell adhesion and cytoskeletal organization in the embryo and in neural crest cells during craniofacial development. PAK5 may also play a role in controlling the signaling of Raf-1, an effector of Ras, at the mitochondria. Length = 292

>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 42/162 (25%), Positives = 68/162 (41%), Gaps = 18/162 (11%)

Query: 60  IFGAPLPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIP 119
           I G PL   K+   +   L  L +     I+ R+ K  N+  NE+   K  DF L+    
Sbjct: 109 IMGHPLSEDKVQYLVYQMLCGLKYIHSAGIIHRDLKPGNLAVNEDCELKILDFGLARH-- 166

Query: 120 EGETHITTDRVIGTRGYSAPEYI-SICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTH 178
             +  +T   V  TR Y APE I +    N+  +++S G  + E+L G+     L K   
Sbjct: 167 -ADAEMTGYVV--TRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKT----LFKG-- 217

Query: 179 DHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHA 220
                  +YL    +  + TG+P P  VQ +     +  + +
Sbjct: 218 ------KDYLDQLTQILKVTGVPGPEFVQKLEDKAAKSYIKS 253

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13, is found in skeletal muscle, heart, lung, testis, pancreas, and small intestine. It regulates microtubule function by phosphorylating Tau. It activates the c-jun promoter and plays a role in G2 cell cycle arrest. It also controls the degration of c-Myb, which is associated with myeloid leukemia and poor prognosis in colorectal cancer. p38delta is the main isoform involved in regulating the differentiation and apoptosis of keratinocytes. Length = 342

>gnl|CDD|133235 cd05104, PTKc_Kit, Catalytic domain of the Protein Tyrosine Kinase, Kit

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 21/74 (28%), Positives = 35/74 (47%)

Query: 92  RNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKS 151
           R+   +NIL     + K  DF L+  I     ++          + APE I  CV   +S
Sbjct: 238 RDLAARNILLTHGRITKICDFGLARDIRNDSNYVVKGNARLPVKWMAPESIFNCVYTFES 297

Query: 152 NVFSFGAFLFELLA 165
           +V+S+G  L+E+ +
Sbjct: 298 DVWSYGILLWEIFS 311

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. Kit signaling is involved in major cellular functions including cell survival, proliferation, differentiation, adhesion, and chemotaxis. Mutations in Kit, which result in constitutive ligand-independent activation, are found in human cancers such as gastrointestinal stromal tumor (GIST) and testicular germ cell tumor (TGCT). The aberrant expression of Kit and/or SCF is associated with other tumor types such as systemic mastocytosis and cancers of the breast, neurons, lung, prostate, colon, and rectum. Although the structure of the human Kit catalytic domain is known, it is excluded from this specific alignment model because it contains a deletion in its sequence. Length = 375

>gnl|CDD|165473 PHA03207, PHA03207, serine/threonine kinase US3; Provisional

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 12/111 (10%)

Query: 64  PLP---RLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPE 120
           PLP    + I   ++ +LAYLH    R I+ R+ KT+NI  +E   A   DF  +  +  
Sbjct: 181 PLPLEQAITIQRRLLEALAYLH---GRGIIHRDVKTENIFLDEPENAVLGDFGAACKLDA 237

Query: 121 GETHITTDRV---IGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRI 168
              H  T +     GT   ++PE +++     K++++S G  LFE+    +
Sbjct: 238 ---HPDTPQCYGWSGTLETNSPELLALDPYCAKTDIWSAGLVLFEMSVKNV 285

Length = 392

>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit; Provisional

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 8/95 (8%)

Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           +++V +  YLH    + I+ R+ K +N+L + +   K  DF  +  +P+      T  + 
Sbjct: 125 AELVLAFEYLH---SKDIIYRDLKPENLLLDNKGHVKVTDFGFAKKVPD-----RTFTLC 176

Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
           GT  Y APE I      +  + ++ G  L+E +AG
Sbjct: 177 GTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAG 211

Length = 329

>gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

 Score = 38.1 bits (88), Expect = 0.002
 Identities = 38/155 (24%), Positives = 67/155 (43%), Gaps = 19/155 (12%)

Query: 28  HNHILKRIGCCLQT-PIPILVFQSVEYGTLRDCIFGAPLPRLKIASDIVN---------- 76
           H +I+  +G C Q  P+ +LV +    G LR+ +     P +  + D             
Sbjct: 77  HKNIINLLGACTQDGPLYVLV-EYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKD 135

Query: 77  --SLAY-----LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR 129
             S AY     + +   +  + R+   +N+L  E+NV K  DF L+  +   + +  T  
Sbjct: 136 LVSCAYQVARGMEYLASQKCIHRDLAARNVLVTEDNVMKIADFGLARDVHNIDYYKKTTN 195

Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELL 164
                 + APE +   V   +S+V+SFG  L+E+ 
Sbjct: 196 GRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIF 230

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Many FGFR3 splice variants have been reported with the IIIb and IIIc isoforms being the predominant forms. FGFR3 IIIc is the isoform expressed in chondrocytes, the cells affected in dwarfism, while IIIb is expressed in epithelial cells. FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and FGF23. It is a negative regulator of long bone growth. In the cochlear duct and in the lens, FGFR3 is involved in differentiation while it appears to have a role in cell proliferation in epithelial cells. Germline mutations in FGFR3 are associated with skeletal disorders including several forms of dwarfism. Some missense mutations are associated with multiple myeloma and carcinomas of the bladder and cervix. Overexpression of FGFR3 is found in thyroid carcinoma. Length = 334

>gnl|CDD|133193 cd05062, PTKc_IGF-1R, Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

 Score = 38.1 bits (88), Expect = 0.002
 Identities = 35/161 (21%), Positives = 73/161 (45%), Gaps = 17/161 (10%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYG-------TLRDCIFGAP---LP 66
           +N  +   + + +H+++ +G   Q    +++ + +  G       +LR  +   P    P
Sbjct: 57  LNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPP 116

Query: 67  RLK----IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGE 122
            LK    +A +I + +AYL+       V R+   +N +  E+   K  DF ++  I E +
Sbjct: 117 SLKKMIQMAGEIADGMAYLN---ANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETD 173

Query: 123 THITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL 163
            +    + +    + +PE +   V    S+V+SFG  L+E+
Sbjct: 174 YYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEI 214

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, where it is frequently overexpressed, IGF-1R is implicated in proliferation, the suppression of apoptosis, invasion, and metastasis. IGF-1R is being developed as a therapeutic target in cancer treatment. Length = 277

>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 30/128 (23%), Positives = 63/128 (49%), Gaps = 16/128 (12%)

Query: 46  LVFQSVEYGTLRDCIFGAPLPRLKIAS---DIVNSLAYLHFGFPRPIVLRNFKTQNILFN 102
           +V + +E G L D +    +   +IA+    ++ +L++LH    + ++ R+ K+ +IL  
Sbjct: 93  VVMEFLEGGALTDIVTHTRMNEEQIATVCLAVLKALSFLH---AQGVIHRDIKSDSILLT 149

Query: 103 EENVAKWFDF----LLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGA 158
            +   K  DF     +S  +P  ++      ++GT  + APE IS      + +++S G 
Sbjct: 150 SDGRVKLSDFGFCAQVSKEVPRRKS------LVGTPYWMAPEVISRLPYGTEVDIWSLGI 203

Query: 159 FLFELLAG 166
            + E++ G
Sbjct: 204 MVIEMVDG 211

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 38/129 (29%), Positives = 60/129 (46%), Gaps = 12/129 (9%)

Query: 46  LVFQSVE---YGTLRDCIFGAPLPRLK-IASDIVNSLAYLHFGFPRPIVLRNFKTQNILF 101
           LVF+ ++   Y  ++D   G P   +K     ++  LA+ H      I+ R+ K +N+L 
Sbjct: 75  LVFEFMDTDLYKLIKDRQRGLPESLIKSYLYQLLQGLAFCH---SHGILHRDLKPENLLI 131

Query: 102 NEENVAKWFDFLLSISI-PEGETHITTDRVIGTRGYSAPEYISIC-VLNEKSNVFSFGAF 159
           N E V K  DF L+ S       +  T  V+ TR Y APE +      +   +++S G  
Sbjct: 132 NTEGVLKLADFGLARSFGSPVRPY--THYVV-TRWYRAPELLLGDKGYSTPVDIWSVGCI 188

Query: 160 LFELLAGRI 168
             ELL+ R 
Sbjct: 189 FAELLSRRP 197

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|133230 cd05099, PTKc_FGFR4, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

 Score = 38.0 bits (88), Expect = 0.003
 Identities = 38/155 (24%), Positives = 67/155 (43%), Gaps = 19/155 (12%)

Query: 28  HNHILKRIGCCLQT-PIPILVFQSVEYGTLRDCIFGAPLPRLKIASDIVN---------- 76
           H +I+  +G C Q  P+ ++V +    G LR+ +     P      DI            
Sbjct: 77  HKNIINLLGVCTQEGPLYVIV-EYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKD 135

Query: 77  --SLAY-----LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR 129
             S AY     + +   R  + R+   +N+L  E+NV K  DF L+  + + + +  T  
Sbjct: 136 LVSCAYQVARGMEYLESRRCIHRDLAARNVLVTEDNVMKIADFGLARGVHDIDYYKKTSN 195

Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELL 164
                 + APE +   V   +S+V+SFG  ++E+ 
Sbjct: 196 GRLPVKWMAPEALFDRVYTHQSDVWSFGILMWEIF 230

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Unlike other FGFRs, there is only one splice form of FGFR4. It binds FGF1, FGF2, FGF6, FGF19, and FGF23. FGF19 is a selective ligand for FGFR4. Although disruption of FGFR4 in mice causes no obvious phenotype, in vivo inhibition of FGFR4 in cultured skeletal muscle cells resulted in an arrest of muscle progenitor differentiation. FGF6 and FGFR4 are uniquely expressed in myofibers and satellite cells. FGF6/FGFR4 signaling appears to play a key role in the regulation of muscle regeneration. A polymorphism in FGFR4 is found in head and neck squamous cell carcinoma. Length = 314

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 37.7 bits (87), Expect = 0.003
 Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 6/106 (5%)

Query: 65  LPRL-KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGET 123
           LP+L   ++ I   +AY+     +  + R+ +  N+L +E  + K  DF L+  I + E 
Sbjct: 102 LPKLIDFSAQIAEGMAYIE---RKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEY 158

Query: 124 HITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA-GRI 168
                     + ++APE I+      KS+V+SFG  L+E++  G+I
Sbjct: 159 TAREGAKFPIK-WTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKI 203

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 37.5 bits (88), Expect = 0.003
 Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 17/97 (17%)

Query: 78  LAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYS 137
           L YLH      I+ R+ K  NIL N + V K  DF L+    +  +   T+RVI T  Y 
Sbjct: 113 LQYLH---SNGILHRDIKGSNILINNDGVLKLADFGLARPYTKRNSADYTNRVI-TLWYR 168

Query: 138 APE-------YISICVLNEKSNVFSFGAFLFELLAGR 167
            PE       Y        + +++S G  L EL  G+
Sbjct: 169 PPELLLGATRY------GPEVDMWSVGCILAELFLGK 199

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173643 cd05077, PTK_Jak1_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 37.2 bits (86), Expect = 0.004
 Identities = 58/226 (25%), Positives = 93/226 (41%), Gaps = 46/226 (20%)

Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTL------RDCIFGAPLPRLKIASDIVNSL 78
           Q+SH HI+   G C++    I+V + VE+G L      +  +   P  + K+A  + ++L
Sbjct: 60  QVSHKHIVLLYGVCVRDVENIMVEEFVEFGPLDLFMHRKSDVLTTPW-KFKVAKQLASAL 118

Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGE-THITTDRVIGTRGYS 137
           +YL     + +V  N  T+NIL   E +       + +S P    T ++    +    + 
Sbjct: 119 SYLE---DKDLVHGNVCTKNILLAREGIDGECGPFIKLSDPGIPITVLSRQECVERIPWI 175

Query: 138 APEYISICVLNEK-----SNVFSFGAFLFEL-LAGRIHIWDLLKDTHDHGCFFNEYLKNY 191
           APE    CV + K     ++ +SFG  L+E+   G I     LKD            K  
Sbjct: 176 APE----CVEDSKNLSIAADKWSFGTTLWEICYNGEIP----LKD------------KTL 215

Query: 192 LEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRP 237
            E +RF      ++     C E        A L   C+N  P  RP
Sbjct: 216 AEKERFYEGQCMLVTPS--CKE-------LADLMTHCMNYDPNQRP 252

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 262

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 9/88 (10%)

Query: 56  LRDCIFGAPLPRLKIAS---DIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDF 112
           LRD     PLP  ++ S    ++  +AY+H      I+ R+ K  N+L + + V K  DF
Sbjct: 89  LRDE--ERPLPEAQVKSYMRMLLKGVAYMH---ANGIMHRDLKPANLLISADGVLKIADF 143

Query: 113 LLSISIPEGETHITTDRVIGTRGYSAPE 140
            L+    E E  + + +V  TR Y APE
Sbjct: 144 GLARLFSEEEPRLYSHQV-ATRWYRAPE 170

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 6/97 (6%)

Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEG--ETHITTDRVI 131
           ++  L YLH       + R+ K  NIL  E+   K  DF +S S+ +G   T       +
Sbjct: 111 VLKGLEYLH---SNGQIHRDIKAGNILLGEDGSVKIADFGVSASLADGGDRTRKVRKTFV 167

Query: 132 GTRGYSAPEYIS-ICVLNEKSNVFSFGAFLFELLAGR 167
           GT  + APE +  +   + K++++SFG    EL  G 
Sbjct: 168 GTPCWMAPEVMEQVHGYDFKADIWSFGITAIELATGA 204

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 37.5 bits (88), Expect = 0.004
 Identities = 41/156 (26%), Positives = 64/156 (41%), Gaps = 26/156 (16%)

Query: 25  QMSHNHI--LKRIGCCLQTPIPILVFQSVEY---GTLRDCIFGAPLPRLK-IASDIVNSL 78
           ++ H +I  L  +    +  +  LVF+  +      L           +K I   ++  L
Sbjct: 54  ELKHPNIVKLLDV-IHTERKL-YLVFEYCDMDLKKYLDKRPGPLSPNLIKSIMYQLLRGL 111

Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLS--ISIPEGETHITTDRVIGTRGY 136
           AY H      I+ R+ K QNIL N + V K  DF L+    IP       T  V+ T  Y
Sbjct: 112 AYCH---SHRILHRDLKPQNILINRDGVLKLADFGLARAFGIP---LRTYTHEVV-TLWY 164

Query: 137 SAPEYISICVLNEKS-----NVFSFGAFLFELLAGR 167
            APE +    L  K      +++S G    E++ G+
Sbjct: 165 RAPEIL----LGSKHYSTAVDIWSVGCIFAEMITGK 196

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	241
KOG0581	364	consensus Mitogen-activated protein kinase kinase	100.0
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	100.0
KOG0192	362	consensus Tyrosine kinase specific for activated (	100.0
KOG1187	361	consensus Serine/threonine protein kinase [Signal	100.0
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	100.0
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	100.0
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	100.0
KOG0575	592	consensus Polo-like serine/threonine protein kinas	100.0
KOG0582	516	consensus Ste20-like serine/threonine protein kina	100.0
KOG0578	550	consensus p21-activated serine/threonine protein k	100.0
KOG0595	429	consensus Serine/threonine-protein kinase involved	100.0
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	100.0
KOG0598	357	consensus Ribosomal protein S6 kinase and related	100.0
KOG0198	313	consensus MEKK and related serine/threonine protei	100.0
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	100.0
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	100.0
PHA02988	283	hypothetical protein; Provisional	100.0
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG4721	904	consensus Serine/threonine protein kinase, contain	100.0
KOG0583	370	consensus Serine/threonine protein kinase [Signal	100.0
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	100.0
KOG0201	467	consensus Serine/threonine protein kinase [Signal	100.0
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	100.0
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	100.0
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	100.0
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	100.0
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	100.0
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	100.0
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	100.0
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	100.0
KOG0589	426	consensus Serine/threonine protein kinase [General	100.0
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	100.0
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	100.0
KOG0661	538	consensus MAPK related serine/threonine protein ki	100.0
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	100.0
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	100.0
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	100.0
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	100.0
PLN00034	353	mitogen-activated protein kinase kinase; Provision	100.0
PTZ00267	478	NIMA-related protein kinase; Provisional	100.0
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	100.0
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	100.0
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	100.0
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	100.0
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	100.0
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	100.0
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	100.0
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	100.0
PTZ00263	329	protein kinase A catalytic subunit; Provisional	100.0
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	100.0
KOG0610	459	consensus Putative serine/threonine protein kinase	100.0
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	100.0
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	100.0
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	100.0
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	100.0
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	100.0
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	100.0
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	100.0
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	100.0
KOG0611	668	consensus Predicted serine/threonine protein kinas	100.0
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	100.0
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	100.0
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	100.0
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	100.0
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	100.0
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	100.0
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	100.0
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	100.0
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	100.0
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	100.0
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	100.0
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	100.0
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	100.0
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	100.0
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	100.0
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	100.0
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	100.0
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	100.0
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	100.0
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	100.0
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	100.0
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	100.0
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	100.0
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	100.0
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	100.0
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	100.0
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	100.0
KOG0694	694	consensus Serine/threonine protein kinase [Signal	100.0
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	100.0
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	100.0
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	100.0
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	100.0
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	100.0
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	100.0
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	100.0
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	100.0
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	100.0
PHA03212	391	serine/threonine kinase US3; Provisional	100.0
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	100.0
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	100.0
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	100.0
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	100.0
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	100.0
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	100.0
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	100.0
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	100.0
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	100.0
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	100.0
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	100.0
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	100.0
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	100.0
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	100.0
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	100.0
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	100.0
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	100.0
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	100.0
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	100.0
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	100.0
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	100.0
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	100.0
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	100.0
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	100.0
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	100.0
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	100.0
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	100.0
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	100.0
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	100.0
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	100.0
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	100.0
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	100.0
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	100.0
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	100.0
KOG0596	677	consensus Dual specificity; serine/threonine and t	100.0
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	100.0
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	100.0
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	100.0
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	100.0
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	100.0
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	100.0
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	100.0
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	100.0
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	100.0
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	100.0
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	100.0
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	100.0
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	100.0
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	100.0
PHA03207	392	serine/threonine kinase US3; Provisional	100.0
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	100.0
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	100.0
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	100.0
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	100.0
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	100.0
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	100.0
KOG1989	738	consensus ARK protein kinase family [Signal transd	100.0
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	100.0
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	100.0
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	100.0
KOG0605	550	consensus NDR and related serine/threonine kinases	100.0
PTZ00283	496	serine/threonine protein kinase; Provisional	100.0
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	100.0
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	100.0
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	100.0
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	100.0
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	100.0
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	100.0
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	100.0
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	100.0
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	100.0
KOG0584	632	consensus Serine/threonine protein kinase [General	100.0
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	100.0
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	100.0
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	100.0
PHA03211	461	serine/threonine kinase US3; Provisional	100.0
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	100.0
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	100.0
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	100.0
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	100.0
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	100.0
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	100.0
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	100.0
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	100.0
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	100.0
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	100.0
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	100.0
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	100.0
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	100.0
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	100.0
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	100.0
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	100.0
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	100.0
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	100.0
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	100.0
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	100.0
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	100.0
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	100.0
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	100.0
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	100.0
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	100.0
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	100.0
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	100.0
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	100.0
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	100.0
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	100.0
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	100.0
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	100.0
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	100.0
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	100.0
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	100.0
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	100.0
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	100.0
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	100.0
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	100.0
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	100.0
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	100.0
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	100.0
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	100.0
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	100.0
KOG4717	864	consensus Serine/threonine protein kinase [Signal	100.0
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	100.0
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	100.0
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	100.0
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	100.0
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	100.0
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	100.0
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	100.0
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	100.0
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	100.0
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	100.0
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	100.0
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	100.0
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	100.0
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	100.0
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	100.0
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	100.0
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	100.0
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	100.0
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	100.0
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	100.0
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	100.0
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	100.0
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	100.0
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	100.0
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	100.0
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	100.0
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	100.0
PHA03209	357	serine/threonine kinase US3; Provisional	100.0
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	100.0
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	100.0
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	100.0
KOG0586	596	consensus Serine/threonine protein kinase [General	100.0
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	100.0
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	100.0
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	100.0
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	100.0
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	100.0
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	100.0
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	100.0
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	100.0
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	100.0
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	100.0
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	100.0
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	100.0
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	100.0
PTZ00266	1021	NIMA-related protein kinase; Provisional	100.0
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	100.0
KOG2052	513	consensus Activin A type IB receptor, serine/threo	100.0
PTZ00036	440	glycogen synthase kinase; Provisional	100.0
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	100.0
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	100.0
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	100.0
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	100.0
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	100.0
PHA03210	501	serine/threonine kinase US3; Provisional	100.0
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	100.0
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	100.0
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	100.0
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	100.0
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	100.0
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	100.0
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	100.0
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	100.0
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	100.0
KOG0577	948	consensus Serine/threonine protein kinase [Signal	100.0
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	100.0
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	100.0
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	100.0
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	100.0
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	100.0
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	100.0
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	100.0
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	100.0
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	100.0
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	100.0
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	100.0
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	100.0
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	100.0
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	100.0
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	100.0
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	100.0
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	100.0
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	100.0
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	100.0
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	100.0
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	100.0
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	100.0
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	100.0
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	100.0
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	100.0
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	100.0
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	100.0
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	100.0
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	100.0
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	100.0
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	100.0
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	100.0
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	100.0
PTZ00284	467	protein kinase; Provisional	100.0
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	100.0
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	100.0
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	100.0
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	100.0
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	100.0
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	100.0
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	100.0
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	100.0
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	100.0
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	100.0
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	100.0
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	100.0
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	100.0
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	100.0
KOG3653	534	consensus Transforming growth factor beta/activin	100.0
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	100.0
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	100.0
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	100.0
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	100.0
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	100.0
PLN00009	294	cyclin-dependent kinase A; Provisional	100.0
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	100.0
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	100.0
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	100.0
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	100.0
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	100.0
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	100.0
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	100.0
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	100.0
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	100.0
KOG0690	516	consensus Serine/threonine protein kinase [Signal	100.0
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	100.0
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	100.0
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	100.0
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	100.0
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	100.0
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	100.0
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	100.0
PHA02882	294	putative serine/threonine kinase; Provisional	99.98
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.98
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.98
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.98
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.98
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.98
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.98
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.98
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.97
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.97
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.97
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.97
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.97
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.97
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.97
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.97
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.97
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.97
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.97
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.97
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.97
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.96
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.96
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.96
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.96
PLN00181	793	protein SPA1-RELATED; Provisional	99.96
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.96
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.95
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.95
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.95
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.95
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.95
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.95
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.95
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	99.94
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.94
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.94
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.94
KOG1152	772	consensus Signal transduction serine/threonine kin	99.94
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.94
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.93
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.93
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.92
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.92
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.92
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	99.9
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.89
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	99.85
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.85
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.84
PRK09188	365	serine/threonine protein kinase; Provisional	99.82
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	99.78
PRK12274	218	serine/threonine protein kinase; Provisional	99.78
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.77
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.76
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.74
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.71
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.7
PRK10345	210	hypothetical protein; Provisional	99.7
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.64
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.64
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.63
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.62
KOG1266	458	consensus Protein kinase [Signal transduction mech	99.61
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.61
PRK14879	211	serine/threonine protein kinase; Provisional	99.6
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.59
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.58
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.55
KOG1243	690	consensus Protein kinase [General function predict	99.52
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.51
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.46
smart00090	237	RIO RIO-like kinase.	99.45
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.44
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.24
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	99.18
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	99.18
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	99.16
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.15
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	99.06
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	99.03
KOG3087	229	consensus Serine/threonine protein kinase [General	98.96
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	98.94
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	98.92
KOG2137	700	consensus Protein kinase [Signal transduction mech	98.92
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	98.85
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	98.85
COG4248	637	Uncharacterized protein with protein kinase and he	98.78
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	98.75
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	98.69
PRK09902	216	hypothetical protein; Provisional	98.45
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	98.39
COG0478	304	RIO-like serine/threonine protein kinase fused to	98.33
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	98.31
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	98.25
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	98.09
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	98.07
KOG0576	829	consensus Mitogen-activated protein kinase kinase	98.04
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	98.0
COG0661	517	AarF Predicted unusual protein kinase [General fun	97.55
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	97.53
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	97.47
KOG1093	725	consensus Predicted protein kinase (contains TBC a	97.45
KOG1235	538	consensus Predicted unusual protein kinase [Genera	97.4
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	97.4
PLN02876	822	acyl-CoA dehydrogenase	97.29
PF01636	239	APH: Phosphotransferase enzyme family This family	97.14
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	96.84
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	96.76
KOG1826	2724	consensus Ras GTPase activating protein RasGAP/neu	96.42
COG3173	321	Predicted aminoglycoside phosphotransferase [Gener	96.31
COG5072	488	ALK1 Serine/threonine kinase of the haspin family	96.15
PLN02236	344	choline kinase	96.01
KOG2268	465	consensus Serine/threonine protein kinase [Signal	95.82
PLN02421	330	phosphotransferase, alcohol group as acceptor/kina	95.47
PF13095	207	FTA2: Kinetochore Sim4 complex subunit FTA2	95.46
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	95.29
PF07387	308	Seadorna_VP7: Seadornavirus VP7; InterPro: IPR0099	93.88
PRK05231	319	homoserine kinase; Provisional	93.86
PF03881	288	Fructosamin_kin: Fructosamine kinase; InterPro: IP	93.42
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	93.35
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	93.34
PTZ00384	383	choline kinase; Provisional	93.3
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	93.29
PF01633	211	Choline_kinase: Choline/ethanolamine kinase; Inter	92.32
PRK10271	188	thiK thiamine kinase; Provisional	92.22
COG0510	269	ycfN Thiamine kinase and related kinases [Coenzyme	92.19
TIGR02906	313	spore_CotS spore coat protein, CotS family. Member	91.28
COG3001	286	Uncharacterized protein conserved in bacteria [Fun	91.15
PRK10593	297	hypothetical protein; Provisional	91.13
COG2334	331	Putative homoserine kinase type II (protein kinase	91.09
smart00587	196	CHK ZnF_C4 abd HLH domain containing kinases domai	90.74
TIGR02904	309	spore_ysxE spore coat protein YsxE. Members of thi	89.79
cd05152	276	MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH	89.74
COG4499	434	Predicted membrane protein [Function unknown]	87.34
PRK06148	1013	hypothetical protein; Provisional	86.99
PRK09550	401	mtnK methylthioribose kinase; Reviewed	85.8
KOG4720	391	consensus Ethanolamine kinase [Lipid transport and	85.4
PHA03111	444	Ser/Thr kinase; Provisional	85.35

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-47  Score=301.16  Aligned_cols=217  Identities=22%  Similarity=0.263  Sum_probs=176.5

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCc-ceEEEEecCCCCHHHhhcCC----CchHHHHHHHHHH
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPI-PILVFQSVEYGTLRDCIFGA----PLPRLKIASDIVN   76 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~-~~lv~e~~~~~sL~~~l~~~----~~~~~~~~~~i~~   76 (241)
                      |......+....++..+|+++++..+||+||.+||.|...+. ..++||||.+|||.+++...    +...-+++.++++
T Consensus       110 K~I~~~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~~~~~isI~mEYMDgGSLd~~~k~~g~i~E~~L~~ia~~VL~  189 (364)
T KOG0581|consen  110 KVILLNIDPALQKQILRELEILRSCQSPYIVGFYGAFYSNGEEISICMEYMDGGSLDDILKRVGRIPEPVLGKIARAVLR  189 (364)
T ss_pred             EeecccCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEeCCceEEeehhhcCCCCHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence            455555566678889999999999999999999999999995 99999999999999998853    2245689999999


Q ss_pred             HhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHH
Q 044022           77 SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSF  156 (241)
Q Consensus        77 ~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~  156 (241)
                      ||.|||.  +++|+||||||+|+|++..|.+||+|||.+..+.+.    ...+.+||..|||||.+.+..|+.++|||||
T Consensus       190 GL~YLh~--~~~IIHRDIKPsNlLvNskGeVKicDFGVS~~lvnS----~a~tfvGT~~YMsPERi~g~~Ys~~sDIWSL  263 (364)
T KOG0581|consen  190 GLSYLHE--ERKIIHRDIKPSNLLVNSKGEVKICDFGVSGILVNS----IANTFVGTSAYMSPERISGESYSVKSDIWSL  263 (364)
T ss_pred             HHHHHhh--ccCeeeccCCHHHeeeccCCCEEeccccccHHhhhh----hcccccccccccChhhhcCCcCCcccceecc
Confidence            9999994  489999999999999999999999999999877655    3366789999999999999999999999999


Q ss_pred             HHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCC
Q 044022          157 GAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDR  236 (241)
Q Consensus       157 G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~R  236 (241)
                      |+.++|+++|+.||...    ......+.+.+.....+.      .+.++..       .+++++++|+..||++||.+|
T Consensus       264 GLsllE~a~GrfP~~~~----~~~~~~~~~Ll~~Iv~~p------pP~lP~~-------~fS~ef~~FV~~CL~Kdp~~R  326 (364)
T KOG0581|consen  264 GLSLLELAIGRFPYPPP----NPPYLDIFELLCAIVDEP------PPRLPEG-------EFSPEFRSFVSCCLRKDPSER  326 (364)
T ss_pred             cHHHHHHhhCCCCCCCc----CCCCCCHHHHHHHHhcCC------CCCCCcc-------cCCHHHHHHHHHHhcCCcccC
Confidence            99999999999999652    111223333333332211      1122111       355789999999999999999


Q ss_pred             CCCCC
Q 044022          237 PTMVD  241 (241)
Q Consensus       237 pt~~e  241 (241)
                      ||++|
T Consensus       327 ~s~~q  331 (364)
T KOG0581|consen  327 PSAKQ  331 (364)
T ss_pred             CCHHH
Confidence            99864

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=7.1e-47  Score=309.25  Aligned_cols=203  Identities=26%  Similarity=0.358  Sum_probs=169.6

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC------chHHHHHHHHHHHhchhhcC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP------LPRLKIASDIVNSLAYLHFG   84 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~------~~~~~~~~~i~~~l~~lh~~   84 (241)
                      ...++|.+|+++|++|+|+|||+++++|..++.++||||||+.|+|.++|+...      .+.+.++.||++|++||.  
T Consensus       243 m~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~piyIVtE~m~~GsLl~yLr~~~~~~l~~~~Ll~~a~qIaeGM~YLe--  320 (468)
T KOG0197|consen  243 MSPEAFLREAQIMKKLRHEKLVKLYGVCTKQEPIYIVTEYMPKGSLLDYLRTREGGLLNLPQLLDFAAQIAEGMAYLE--  320 (468)
T ss_pred             cChhHHHHHHHHHHhCcccCeEEEEEEEecCCceEEEEEecccCcHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHH--
Confidence            456889999999999999999999999999889999999999999999998732      156789999999999999  


Q ss_pred             CCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHH
Q 044022           85 FPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        85 ~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~  164 (241)
                       ++++|||||.++|||++.+..+||+|||+++...... ........-+..|+|||.+..+.++.+|||||||+++||++
T Consensus       321 -s~~~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~d~~-Y~~~~~~kfPIkWtAPEa~~~~~FS~kSDVWSFGVlL~E~f  398 (468)
T KOG0197|consen  321 -SKNYIHRDLAARNILVDEDLVVKISDFGLARLIGDDE-YTASEGGKFPIKWTAPEALNYGKFSSKSDVWSFGVLLWELF  398 (468)
T ss_pred             -hCCccchhhhhhheeeccCceEEEcccccccccCCCc-eeecCCCCCCceecCHHHHhhCCcccccceeehhhhHHHHh
Confidence             9999999999999999999999999999999544432 22333345678899999999999999999999999999999


Q ss_pred             h-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          165 A-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       165 ~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                      | |+.|+..         ....+.+... +.+.....++             .++..+.++|..||+.+|++|||++
T Consensus       399 T~G~~py~~---------msn~ev~~~l-e~GyRlp~P~-------------~CP~~vY~lM~~CW~~~P~~RPtF~  452 (468)
T KOG0197|consen  399 TYGRVPYPG---------MSNEEVLELL-ERGYRLPRPE-------------GCPDEVYELMKSCWHEDPEDRPTFE  452 (468)
T ss_pred             ccCCCCCCC---------CCHHHHHHHH-hccCcCCCCC-------------CCCHHHHHHHHHHhhCCcccCCCHH
Confidence            8 8888854         3334444443 3343333332             4557899999999999999999985

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=100.00  E-value=5e-46  Score=303.56  Aligned_cols=201  Identities=28%  Similarity=0.397  Sum_probs=164.3

Q ss_pred             HHHHHHHHHHHHhcCCCcccceeeeeeeCC-cceEEEEecCCCCHHHhhcCC---Cc---hHHHHHHHHHHHhchhhcCC
Q 044022           13 YGSCINNITYAAQMSHNHILKRIGCCLQTP-IPILVFQSVEYGTLRDCIFGA---PL---PRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~-~~~lv~e~~~~~sL~~~l~~~---~~---~~~~~~~~i~~~l~~lh~~~   85 (241)
                      .+.|.+|+.+|.+++|||||+++|+|.+.. .+++||||+++|+|.+++...   ..   .++.++.+|+.|+.|||   
T Consensus        83 ~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~~~~iVtEy~~~GsL~~~l~~~~~~~l~~~~~l~~aldiArGm~YLH---  159 (362)
T KOG0192|consen   83 RKAFRREASLLSRLRHPNIVQFYGACTSPPGSLCIVTEYMPGGSLSVLLHKKRKRKLPLKVRLRIALDIARGMEYLH---  159 (362)
T ss_pred             HHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCceEEEEEeCCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHh---
Confidence            679999999999999999999999999887 799999999999999999762   11   47899999999999999   


Q ss_pred             CCC-ceeccCCCCCeeecCCC-CeEEeeccCceecCCCCcceeecccccCCCccCccccc--ccCCCcchhhHHHHHHHH
Q 044022           86 PRP-IVLRNFKTQNILFNEEN-VAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYIS--ICVLNEKSNVFSFGAFLF  161 (241)
Q Consensus        86 ~~~-ivh~dl~~~nil~~~~~-~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~--~~~~~~~~Di~s~G~~~~  161 (241)
                      +++ |||||||++|+|++.++ ++||+|||+++......  ...+...||+.|||||++.  ...++.++||||||+++|
T Consensus       160 ~~~~iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~~~~~~--~~~~~~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlW  237 (362)
T KOG0192|consen  160 SEGPIIHRDLKSDNILVDLKGKTLKIADFGLSREKVISK--TSMTSVAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLW  237 (362)
T ss_pred             cCCCeeecccChhhEEEcCCCCEEEECCCccceeecccc--ccccCCCCCccccChhhhcCCCCcCCccchhhhHHHHHH
Confidence            778 99999999999999997 99999999998765432  1123357999999999999  568999999999999999


Q ss_pred             HHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          162 ELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       162 ~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                      |++||+.||.....         ..........+....++.             .+.+.+..++.+||..||+.||++.
T Consensus       238 El~t~~~Pf~~~~~---------~~~~~~v~~~~~Rp~~p~-------------~~~~~l~~l~~~CW~~dp~~RP~f~  294 (362)
T KOG0192|consen  238 ELLTGEIPFEDLAP---------VQVASAVVVGGLRPPIPK-------------ECPPHLSSLMERCWLVDPSRRPSFL  294 (362)
T ss_pred             HHHHCCCCCCCCCH---------HHHHHHHHhcCCCCCCCc-------------cCCHHHHHHHHHhCCCCCCcCCCHH
Confidence            99999999966321         112222222222222222             1336789999999999999999975

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=5.6e-45  Score=299.02  Aligned_cols=232  Identities=35%  Similarity=0.542  Sum_probs=190.7

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCC-cceEEEEecCCCCHHHhhcCCCc------hHHHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTP-IPILVFQSVEYGTLRDCIFGAPL------PRLKIASD   73 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~-~~~lv~e~~~~~sL~~~l~~~~~------~~~~~~~~   73 (241)
                      ||.+......+ ..+|.+|+.++.+++|||+|+++|||.+.+ +.++|+||+++|||.+.+.....      +|++|+.+
T Consensus       104 VK~~~~~~~~~-~~eF~~Ei~~ls~l~H~Nlv~LlGyC~e~~~~~~LVYEym~nGsL~d~L~~~~~~~L~W~~R~kIa~g  182 (361)
T KOG1187|consen  104 VKRLSSNSGQG-EREFLNEVEILSRLRHPNLVKLLGYCLEGGEHRLLVYEYMPNGSLEDHLHGKKGEPLDWETRLKIALG  182 (361)
T ss_pred             EEEecCCCCcc-hhHHHHHHHHHhcCCCcCcccEEEEEecCCceEEEEEEccCCCCHHHHhCCCCCCCCCHHHHHHHHHH
Confidence            45444444433 667999999999999999999999999988 59999999999999999977542      58999999


Q ss_pred             HHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCC-CCcceeecccccCCCccCcccccccCCCcchh
Q 044022           74 IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPE-GETHITTDRVIGTRGYSAPEYISICVLNEKSN  152 (241)
Q Consensus        74 i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~-~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~D  152 (241)
                      +|.||+|||+.+...|+|||||++|||+|.+.++||+|||+++..+. .......  ..||.+|+|||+...+..+.++|
T Consensus       183 ~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~~aKlsDFGLa~~~~~~~~~~~~~--~~gt~gY~~PEy~~~g~lt~KsD  260 (361)
T KOG1187|consen  183 AARGLAYLHEGCPPPIIHRDIKSSNILLDEDFNAKLSDFGLAKLGPEGDTSVSTT--VMGTFGYLAPEYASTGKLTEKSD  260 (361)
T ss_pred             HHHHHHHHccCCCCCEecCCCCHHHeeECCCCCEEccCccCcccCCccccceeee--cCCCCccCChhhhccCCcCcccc
Confidence            99999999987777899999999999999999999999999966554 2221111  16899999999999999999999


Q ss_pred             hHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCcccc-CCCchhHHHHHHHHHHHHHHhccC
Q 044022          153 VFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQ-DIPCIEKEQQLHASAQLTLECVNN  231 (241)
Q Consensus       153 i~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~cl~~  231 (241)
                      |||||++++|+++|+.|.+...   ........+|.+.....+...++.|+.+.. .++..   .....+..+..+|++.
T Consensus       261 VySFGVvllElitgr~~~d~~~---~~~~~~l~~w~~~~~~~~~~~eiiD~~l~~~~~~~~---~~~~~~~~~a~~C~~~  334 (361)
T KOG1187|consen  261 VYSFGVVLLELITGRKAVDQSR---PRGELSLVEWAKPLLEEGKLREIVDPRLKEGEYPDE---KEVKKLAELALRCLRP  334 (361)
T ss_pred             cccchHHHHHHHhCCcccCCCC---CcccccHHHHHHHHHHCcchhheeCCCccCCCCChH---HHHHHHHHHHHHHcCc
Confidence            9999999999999998876422   122333788888888888899999999873 33211   4556789999999999


Q ss_pred             CCCCCCCCCC
Q 044022          232 SPEDRPTMVD  241 (241)
Q Consensus       232 ~p~~Rpt~~e  241 (241)
                      +|.+||++.|
T Consensus       335 ~~~~RP~m~~  344 (361)
T KOG1187|consen  335 DPKERPTMSQ  344 (361)
T ss_pred             CCCcCcCHHH
Confidence            9999999854

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.3e-45  Score=292.90  Aligned_cols=204  Identities=23%  Similarity=0.296  Sum_probs=163.1

Q ss_pred             HHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCCCC
Q 044022           13 YGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFPRP   88 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~~~   88 (241)
                      .....+|+++|++|+|||||+++++|...+..|||+||++||.|.+++-++..    ....++.|++.|+.|||   ++|
T Consensus       220 ~~~v~~EieILkkL~HP~IV~~~d~f~~~ds~YmVlE~v~GGeLfd~vv~nk~l~ed~~K~~f~Qll~avkYLH---~~G  296 (475)
T KOG0615|consen  220 TRDVQNEIEILKKLSHPNIVRIKDFFEVPDSSYMVLEYVEGGELFDKVVANKYLREDLGKLLFKQLLTAVKYLH---SQG  296 (475)
T ss_pred             hhhhHHHHHHHHhcCCCCEEEEeeeeecCCceEEEEEEecCccHHHHHHhccccccchhHHHHHHHHHHHHHHH---HcC
Confidence            44467999999999999999999999999999999999999999999876643    34568899999999999   999


Q ss_pred             ceeccCCCCCeeecCC---CCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCC---CcchhhHHHHHHHHH
Q 044022           89 IVLRNFKTQNILFNEE---NVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVL---NEKSNVFSFGAFLFE  162 (241)
Q Consensus        89 ivh~dl~~~nil~~~~---~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~---~~~~Di~s~G~~~~~  162 (241)
                      |+||||||+|||+..+   ..+||+|||+++.....+.   -.+.+||+.|.|||++.+...   ..++||||+||++|-
T Consensus       297 I~HRDiKPeNILl~~~~e~~llKItDFGlAK~~g~~sf---m~TlCGTpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfv  373 (475)
T KOG0615|consen  297 IIHRDIKPENILLSNDAEDCLLKITDFGLAKVSGEGSF---MKTLCGTPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFV  373 (475)
T ss_pred             cccccCCcceEEeccCCcceEEEecccchhhcccccee---hhhhcCCccccChhheecCCeecccchheeeeccceEEE
Confidence            9999999999999876   6789999999988764432   245689999999999987643   347899999999999


Q ss_pred             HHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          163 LLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       163 ~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +++|.+||.+..-     ...    +......+.+.-.          +.....-++...+||..||..||++|||++|
T Consensus       374 cLsG~pPFS~~~~-----~~s----l~eQI~~G~y~f~----------p~~w~~Iseea~dlI~~mL~VdP~~R~s~~e  433 (475)
T KOG0615|consen  374 CLSGYPPFSEEYT-----DPS----LKEQILKGRYAFG----------PLQWDRISEEALDLINWMLVVDPENRPSADE  433 (475)
T ss_pred             EeccCCCcccccC-----Ccc----HHHHHhcCccccc----------ChhhhhhhHHHHHHHHHhhEeCcccCcCHHH
Confidence            9999999965211     111    2222222322211          1223355678899999999999999999875

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.9e-45  Score=279.35  Aligned_cols=208  Identities=23%  Similarity=0.337  Sum_probs=170.4

Q ss_pred             cccccHHHHHHHHHHHHhcCCCcccceee-eeeeCCc-ceEEEEecCCCCHHHhhcCC--------CchHHHHHHHHHHH
Q 044022            8 YHRHTYGSCINNITYAAQMSHNHILKRIG-CCLQTPI-PILVFQSVEYGTLRDCIFGA--------PLPRLKIASDIVNS   77 (241)
Q Consensus         8 ~~~~~~~~~~~e~~~l~~l~h~~iv~~~~-~~~~~~~-~~lv~e~~~~~sL~~~l~~~--------~~~~~~~~~~i~~~   77 (241)
                      .++...+....|+.+|++|+|||||++++ .|.++.. +++|||+|.+|+|.+.++..        +...++++.|++.|
T Consensus        57 md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evlnivmE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~A  136 (375)
T KOG0591|consen   57 MDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVLNIVMELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRA  136 (375)
T ss_pred             ccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhhHHHHHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHH
Confidence            34556778899999999999999999999 6666555 89999999999999988643        22578999999999


Q ss_pred             hchhhcCCCC-CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHH
Q 044022           78 LAYLHFGFPR-PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSF  156 (241)
Q Consensus        78 l~~lh~~~~~-~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~  156 (241)
                      |..+|+-..+ .+.||||||.||+++.+|.+|++|||+++.+....+.  ..+.+|||.||+||.+...+|+.+|||||+
T Consensus       137 L~~cH~~~~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL~r~l~s~~tf--A~S~VGTPyYMSPE~i~~~~Y~~kSDiWsl  214 (375)
T KOG0591|consen  137 LYHCHSKIPRGTVMHRDIKPANIFLTANGVVKLGDFGLGRFLSSKTTF--AHSLVGTPYYMSPERIHESGYNFKSDIWSL  214 (375)
T ss_pred             HHHHhccccccceeeccCcchheEEcCCCceeeccchhHhHhcchhHH--HHhhcCCCcccCHHHHhcCCCCcchhHHHH
Confidence            9999942223 3899999999999999999999999999988765443  356789999999999999999999999999


Q ss_pred             HHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCC
Q 044022          157 GAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDR  236 (241)
Q Consensus       157 G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~R  236 (241)
                      ||++|||+.-++||+..         .+.+. ....+++.+.+++            .+.++.++..++..|+..||..|
T Consensus       215 GCllyEMcaL~~PF~g~---------n~~~L-~~KI~qgd~~~~p------------~~~YS~~l~~li~~ci~vd~~~R  272 (375)
T KOG0591|consen  215 GCLLYEMCALQSPFYGD---------NLLSL-CKKIEQGDYPPLP------------DEHYSTDLRELINMCIAVDPEQR  272 (375)
T ss_pred             HHHHHHHHhcCCCcccc---------cHHHH-HHHHHcCCCCCCc------------HHHhhhHHHHHHHHHccCCcccC
Confidence            99999999999999652         22222 2233344443333            24778899999999999999999


Q ss_pred             CCC
Q 044022          237 PTM  239 (241)
Q Consensus       237 pt~  239 (241)
                      |+.
T Consensus       273 P~t  275 (375)
T KOG0591|consen  273 PDT  275 (375)
T ss_pred             CCc
Confidence            973

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.1e-45  Score=312.11  Aligned_cols=215  Identities=24%  Similarity=0.378  Sum_probs=180.5

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc---------------
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL---------------   65 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~---------------   65 (241)
                      ||....+...+...+|.+|++++..|+|||||+++|+|..++.+|||+|||.+|+|..||....+               
T Consensus       521 VK~LKd~a~~~~~~dF~REaeLla~l~H~nIVrLlGVC~~~~P~~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L  600 (774)
T KOG1026|consen  521 VKALKDKAENQARQDFRREAELLAELQHPNIVRLLGVCREGDPLCMVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPL  600 (774)
T ss_pred             HhhhcccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEccCCeeEEEEEecccccHHHHHHhhCCccccccCCCCCCCCC
Confidence            56676666666889999999999999999999999999999999999999999999999965411               


Q ss_pred             ---hHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccc
Q 044022           66 ---PRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYI  142 (241)
Q Consensus        66 ---~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~  142 (241)
                         +.+.++.||+.|+.||-   ++.+|||||.++|+|++.+..|||+|||+++-.-........+.-.-+..|||||.+
T Consensus       601 ~~~q~L~iA~QIAaGM~YLs---~~~FVHRDLATRNCLVge~l~VKIsDfGLsRdiYssDYYk~~~~t~lPIRWMppEsI  677 (774)
T KOG1026|consen  601 STSQFLHIATQIAAGMEYLS---SHHFVHRDLATRNCLVGENLVVKISDFGLSRDIYSSDYYKVRGNTLLPIRWMPPESI  677 (774)
T ss_pred             CHHHHHHHHHHHHHHHHHHH---hCcccccchhhhhceeccceEEEecccccchhhhhhhhhcccCCceeeeecCCHHHh
Confidence               46889999999999999   999999999999999999999999999999866544333333333557899999999


Q ss_pred             cccCCCcchhhHHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHH
Q 044022          143 SICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHAS  221 (241)
Q Consensus       143 ~~~~~~~~~Di~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (241)
                      ..++++.+||||||||++||+++ |+.||+...++         + +-.....+.....++             .++..+
T Consensus       678 ly~kFTteSDVWs~GVvLWEIFsyG~QPy~glSn~---------E-VIe~i~~g~lL~~Pe-------------~CP~~v  734 (774)
T KOG1026|consen  678 LYGKFTTESDVWSFGVVLWEIFSYGKQPYYGLSNQ---------E-VIECIRAGQLLSCPE-------------NCPTEV  734 (774)
T ss_pred             hcCcccchhhhhhhhhhhhhhhccccCcccccchH---------H-HHHHHHcCCcccCCC-------------CCCHHH
Confidence            99999999999999999999998 99999774433         2 334444555444443             555789


Q ss_pred             HHHHHHhccCCCCCCCCCCC
Q 044022          222 AQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       222 ~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      .+||+.||+.+|++|||+.|
T Consensus       735 Y~LM~~CW~~~P~~RPsF~e  754 (774)
T KOG1026|consen  735 YSLMLECWNENPKRRPSFKE  754 (774)
T ss_pred             HHHHHHHhhcCcccCCCHHH
Confidence            99999999999999999864

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.9e-43  Score=292.60  Aligned_cols=203  Identities=20%  Similarity=0.269  Sum_probs=169.2

Q ss_pred             cccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC----CchHHHHHHHHHHHhchhhcCC
Q 044022           10 RHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA----PLPRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        10 ~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~----~~~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ....+...+||+|.++|+|||||+++++|++.++.|||.|+|+.++|..+++..    +..+..++.||+.||.|||   
T Consensus        59 ~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~nVYivLELC~~~sL~el~Krrk~ltEpEary~l~QIv~GlkYLH---  135 (592)
T KOG0575|consen   59 PKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNNVYIVLELCHRGSLMELLKRRKPLTEPEARYFLRQIVEGLKYLH---  135 (592)
T ss_pred             cchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCceEEEEEecCCccHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHH---
Confidence            356778899999999999999999999999999999999999999999998854    3357889999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~  165 (241)
                      +++|+|||||..|+|++.+.++||+|||+|..+......  ..+.+||+-|.|||++.....+..+||||+||++|.++.
T Consensus       136 ~~~IiHRDLKLGNlfL~~~~~VKIgDFGLAt~le~~~Er--k~TlCGTPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~  213 (592)
T KOG0575|consen  136 SLGIIHRDLKLGNLFLNENMNVKIGDFGLATQLEYDGER--KKTLCGTPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLV  213 (592)
T ss_pred             hcCceecccchhheeecCcCcEEecccceeeeecCcccc--cceecCCCcccChhHhccCCCCCchhhhhhhhHHHhhhh
Confidence            999999999999999999999999999999888755322  234689999999999999999999999999999999999


Q ss_pred             cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          166 GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       166 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      |++||..         ....+............       +.        ..+....+||+++|+.||.+|||+++
T Consensus       214 G~PPFet---------k~vkety~~Ik~~~Y~~-------P~--------~ls~~A~dLI~~lL~~~P~~Rpsl~~  265 (592)
T KOG0575|consen  214 GRPPFET---------KTVKETYNKIKLNEYSM-------PS--------HLSAEAKDLIRKLLRPNPSERPSLDE  265 (592)
T ss_pred             CCCCccc---------chHHHHHHHHHhcCccc-------cc--------ccCHHHHHHHHHHhcCCcccCCCHHH
Confidence            9999965         22333333332222111       11        12246789999999999999999864

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6e-43  Score=280.19  Aligned_cols=224  Identities=20%  Similarity=0.253  Sum_probs=178.6

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc------hHHHHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL------PRLKIASDI   74 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~------~~~~~~~~i   74 (241)
                      ||.++.|-.....+.+.+|++.+..++||||++++.+|.-+..+|+||.||.+||+.+.++....      .+..+++++
T Consensus        56 IK~inLEkc~~~ld~l~kE~~~msl~~HPNIv~~~~sFvv~~~LWvVmpfMa~GS~ldIik~~~~~Gl~E~~Ia~iLre~  135 (516)
T KOG0582|consen   56 IKIINLEKCNNDLDALRKEVQTMSLIDHPNIVTYHCSFVVDSELWVVMPFMAGGSLLDIIKTYYPDGLEEASIATILREV  135 (516)
T ss_pred             EEEeehhhhhhhHHHHHHHHHHhhhcCCCCcceEEEEEEecceeEEeehhhcCCcHHHHHHHHccccccHHHHHHHHHHH
Confidence            68888777777789999999999999999999999999999999999999999999999976522      466789999


Q ss_pred             HHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcc-eee-cccccCCCccCcccccc--cCCCcc
Q 044022           75 VNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH-ITT-DRVIGTRGYSAPEYISI--CVLNEK  150 (241)
Q Consensus        75 ~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~-~~~-~~~~~~~~~~aPE~~~~--~~~~~~  150 (241)
                      +.||.|||   .+|.+|||+|+.|||++.+|.+||+|||.+..+-..... ... ...+|+++|||||++..  ..|+.|
T Consensus       136 LkaL~YLH---~~G~IHRdvKAgnILi~~dG~VkLadFgvsa~l~~~G~R~~~rf~tfvgtp~wmAPEvl~q~~~GYdfK  212 (516)
T KOG0582|consen  136 LKALDYLH---QNGHIHRDVKAGNILIDSDGTVKLADFGVSASLFDSGDRQVTRFNTFVGTPCWMAPEVLMQQLHGYDFK  212 (516)
T ss_pred             HHHHHHHH---hcCceecccccccEEEcCCCcEEEcCceeeeeecccCceeeEeeccccCcccccChHHhhhcccCccch
Confidence            99999999   999999999999999999999999999998776554322 222 55689999999999643  378999


Q ss_pred             hhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhcc
Q 044022          151 SNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVN  230 (241)
Q Consensus       151 ~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~  230 (241)
                      +||||||+...|+.+|..||.....        ..-.+..+.+......      -...+.......+.+++.++..||.
T Consensus       213 aDIwSfGITA~ELA~G~aPf~k~pP--------mkvLl~tLqn~pp~~~------t~~~~~d~~k~~~ksf~e~i~~CL~  278 (516)
T KOG0582|consen  213 ADIWSFGITACELAHGHAPFSKYPP--------MKVLLLTLQNDPPTLL------TSGLDKDEDKKFSKSFREMIALCLV  278 (516)
T ss_pred             hhhhhhhHHHHHHhcCCCCcccCCh--------HHHHHHHhcCCCCCcc------cccCChHHhhhhcHHHHHHHHHHhh
Confidence            9999999999999999999966321        1112222222221111      1122223334666789999999999


Q ss_pred             CCCCCCCCCCC
Q 044022          231 NSPEDRPTMVD  241 (241)
Q Consensus       231 ~~p~~Rpt~~e  241 (241)
                      +||++||||++
T Consensus       279 kDP~kRptAsk  289 (516)
T KOG0582|consen  279 KDPSKRPTASK  289 (516)
T ss_pred             cCcccCCCHHH
Confidence            99999999863

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-43  Score=290.64  Aligned_cols=205  Identities=20%  Similarity=0.282  Sum_probs=170.8

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC---CchHHHHHHHHHHHhchhhcCCCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA---PLPRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~---~~~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ...+-.++|+.+|+..+|+|||.+++.|.-.+.+|+||||++||+|.+.+...   +.++..++.+++.||+|||   .+
T Consensus       312 ~~keLilnEi~Vm~~~~H~NiVnfl~Sylv~deLWVVMEym~ggsLTDvVt~~~~~E~qIA~Icre~l~aL~fLH---~~  388 (550)
T KOG0578|consen  312 PKKELLLNEILVMRDLHHPNIVNFLDSYLVGDELWVVMEYMEGGSLTDVVTKTRMTEGQIAAICREILQGLKFLH---AR  388 (550)
T ss_pred             CchhhhHHHHHHHHhccchHHHHHHHHhcccceeEEEEeecCCCchhhhhhcccccHHHHHHHHHHHHHHHHHHH---hc
Confidence            44566789999999999999999999999999999999999999999999877   5578899999999999999   99


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcC
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR  167 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~  167 (241)
                      +|+|||||.+|||++.+|.+||+|||+|..+.....  ...+.+||++|||||+.....|+++.||||||++++||+.|.
T Consensus       389 gIiHrDIKSDnILL~~~g~vKltDFGFcaqi~~~~~--KR~TmVGTPYWMAPEVvtrk~YG~KVDIWSLGIMaIEMveGE  466 (550)
T KOG0578|consen  389 GIIHRDIKSDNILLTMDGSVKLTDFGFCAQISEEQS--KRSTMVGTPYWMAPEVVTRKPYGPKVDIWSLGIMAIEMVEGE  466 (550)
T ss_pred             ceeeeccccceeEeccCCcEEEeeeeeeeccccccC--ccccccCCCCccchhhhhhcccCccccchhhhhHHHHHhcCC
Confidence            999999999999999999999999999988766543  346789999999999999999999999999999999999999


Q ss_pred             cccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          168 IHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       168 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +||...       .  -..-++-...++. ..+..           .+..+..+++|+.+||..|+.+|+||.|
T Consensus       467 PPYlnE-------~--PlrAlyLIa~ng~-P~lk~-----------~~klS~~~kdFL~~cL~~dv~~RasA~e  519 (550)
T KOG0578|consen  467 PPYLNE-------N--PLRALYLIATNGT-PKLKN-----------PEKLSPELKDFLDRCLVVDVEQRASAKE  519 (550)
T ss_pred             CCccCC-------C--hHHHHHHHhhcCC-CCcCC-----------ccccCHHHHHHHHHHhhcchhcCCCHHH
Confidence            999541       1  1111111111221 11111           1244578999999999999999999864

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=4.1e-43  Score=278.52  Aligned_cols=158  Identities=23%  Similarity=0.378  Sum_probs=142.0

Q ss_pred             ccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcC
Q 044022            9 HRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFG   84 (241)
Q Consensus         9 ~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~   84 (241)
                      .....+....|+.+|+.++|||||.++++++..+..|+|||||.||+|.++++....    ....++.||+.|+++||  
T Consensus        49 ~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i~lVMEyC~gGDLs~yi~~~~~l~e~t~r~Fm~QLA~alq~L~--  126 (429)
T KOG0595|consen   49 NKKLVELLLSEIKILKELKHPNIVRLLDCIEDDDFIYLVMEYCNGGDLSDYIRRRGRLPEATARHFMQQLASALQFLH--  126 (429)
T ss_pred             CHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCCeEEEEEEeCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH--
Confidence            444566778999999999999999999999999999999999999999999987632    56778999999999999  


Q ss_pred             CCCCceeccCCCCCeeecCC------CCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHH
Q 044022           85 FPRPIVLRNFKTQNILFNEE------NVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGA  158 (241)
Q Consensus        85 ~~~~ivh~dl~~~nil~~~~------~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~  158 (241)
                       +++|+||||||+|||++..      ..+||+|||+++.+.....   ..+.+|++.|||||++....|+.|+|+||+|+
T Consensus       127 -~~~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~L~~~~~---a~tlcGSplYMAPEV~~~~~YdAKADLWSiG~  202 (429)
T KOG0595|consen  127 -ENNIIHRDLKPQNILLSTTARNDTSPVLKIADFGFARFLQPGSM---AETLCGSPLYMAPEVIMSQQYDAKADLWSIGT  202 (429)
T ss_pred             -HCCeeeccCCcceEEeccCCCCCCCceEEecccchhhhCCchhH---HHHhhCCccccCHHHHHhccccchhhHHHHHH
Confidence             9999999999999999865      5689999999998876543   24568999999999999999999999999999


Q ss_pred             HHHHHHhcCccccc
Q 044022          159 FLFELLAGRIHIWD  172 (241)
Q Consensus       159 ~~~~~~~g~~p~~~  172 (241)
                      |+|++++|+.||..
T Consensus       203 Ilyq~l~g~~Pf~a  216 (429)
T KOG0595|consen  203 ILYQCLTGKPPFDA  216 (429)
T ss_pred             HHHHHHhCCCCccc
Confidence            99999999999965

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=100.00  E-value=8.2e-43  Score=267.45  Aligned_cols=233  Identities=19%  Similarity=0.248  Sum_probs=179.3

Q ss_pred             ccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc-----hHHHHHHHHHHH
Q 044022            3 FYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL-----PRLKIASDIVNS   77 (241)
Q Consensus         3 ~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-----~~~~~~~~i~~~   77 (241)
                      |...+.+....+-.++|+++|++|+|+|+|.++++|.....+++|+|||+. ++.+-+...+.     ...+++.|++.|
T Consensus        35 F~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkrklhLVFE~~dh-TvL~eLe~~p~G~~~~~vk~~l~Q~l~a  113 (396)
T KOG0593|consen   35 FVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKRKLHLVFEYCDH-TVLHELERYPNGVPSELVKKYLYQLLKA  113 (396)
T ss_pred             eccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcceeEEEeeecch-HHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence            344555556677789999999999999999999999999999999999985 66555655432     356899999999


Q ss_pred             hchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc-cCCCcchhhHHH
Q 044022           78 LAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI-CVLNEKSNVFSF  156 (241)
Q Consensus        78 l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~  156 (241)
                      +.|+|   +++++||||||+|||++.++.+|++|||+++.+.....  ..+-.+.|..|+|||.+.+ ..|+.++||||+
T Consensus       114 i~~cH---k~n~IHRDIKPENILit~~gvvKLCDFGFAR~L~~pgd--~YTDYVATRWYRaPELLvGDtqYG~pVDiWAi  188 (396)
T KOG0593|consen  114 IHFCH---KNNCIHRDIKPENILITQNGVVKLCDFGFARTLSAPGD--NYTDYVATRWYRAPELLVGDTQYGKPVDIWAI  188 (396)
T ss_pred             hhhhh---hcCeecccCChhheEEecCCcEEeccchhhHhhcCCcc--hhhhhhhhhhccChhhhcccCcCCCcccchhh
Confidence            99999   99999999999999999999999999999998764322  1233578889999999988 689999999999


Q ss_pred             HHHHHHHHhcCccccccccc------CCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhH-HHHHHHHHHHHHHhc
Q 044022          157 GAFLFELLAGRIHIWDLLKD------THDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEK-EQQLHASAQLTLECV  229 (241)
Q Consensus       157 G~~~~~~~~g~~p~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~cl  229 (241)
                      ||++.||++|.+-|......      ....+....+...-+..++.+.++.-+......+.... ...+..+.+++..||
T Consensus       189 GCv~aEl~~G~pL~PG~SDiDQLy~I~ktLG~L~prhq~iF~~N~~F~Gv~lP~~~~~epLe~k~p~~s~~~ld~~k~cL  268 (396)
T KOG0593|consen  189 GCVFAELLTGEPLWPGRSDIDQLYLIRKTLGNLIPRHQSIFSSNPFFHGVRLPEPEHPEPLERKYPKISNVLLDLLKKCL  268 (396)
T ss_pred             hHHHHHHhcCCcCCCCcchHHHHHHHHHHHcccCHHHHHHhccCCceeeeecCCCCCccchhhhcccchHHHHHHHHHHh
Confidence            99999999999887542111      11223334444555555666666655544333332111 244457899999999


Q ss_pred             cCCCCCCCCCCC
Q 044022          230 NNSPEDRPTMVD  241 (241)
Q Consensus       230 ~~~p~~Rpt~~e  241 (241)
                      ..||++|+|.+|
T Consensus       269 ~~dP~~R~sc~q  280 (396)
T KOG0593|consen  269 KMDPDDRLSCEQ  280 (396)
T ss_pred             cCCccccccHHH
Confidence            999999999754

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=100.00  E-value=1e-41  Score=267.85  Aligned_cols=200  Identities=22%  Similarity=0.270  Sum_probs=164.3

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ........|..+|.+++||+||++.-.|++...+|+|+||+.||.|...|+....    ...-++.+|+.||.|||   +
T Consensus        67 ~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~kLylVld~~~GGeLf~hL~~eg~F~E~~arfYlaEi~lAL~~LH---~  143 (357)
T KOG0598|consen   67 KEVRHTKAERNILSKIKHPFIVKLIYSFQTEEKLYLVLDYLNGGELFYHLQREGRFSEDRARFYLAEIVLALGYLH---S  143 (357)
T ss_pred             hhHHHHHHHHHHHHhCCCCcEeeeEEecccCCeEEEEEeccCCccHHHHHHhcCCcchhHHHHHHHHHHHHHHHHH---h
Confidence            3567788999999999999999999999999999999999999999999986533    45668899999999999   9


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhc
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      ++|+||||||+|||+|.+|+++|+|||+++..-....  ...+.+||+.|||||++....++..+|.||+|+++|+|++|
T Consensus       144 ~gIiyRDlKPENILLd~~GHi~LtDFgL~k~~~~~~~--~t~tfcGT~eYmAPEil~~~gy~~~vDWWsLGillYeML~G  221 (357)
T KOG0598|consen  144 KGIIYRDLKPENILLDEQGHIKLTDFGLCKEDLKDGD--ATRTFCGTPEYMAPEILLGKGYDKAVDWWSLGILLYEMLTG  221 (357)
T ss_pred             CCeeeccCCHHHeeecCCCcEEEeccccchhcccCCC--ccccccCCccccChHHHhcCCCCcccchHhHHHHHHHHhhC
Confidence            9999999999999999999999999999985543322  22447899999999999999999999999999999999999


Q ss_pred             CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCC
Q 044022          167 RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT  238 (241)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt  238 (241)
                      .+||..         ....+..........      ... +.       --+...+++++..|..||++|.-
T Consensus       222 ~pPF~~---------~~~~~~~~~I~~~k~------~~~-p~-------~ls~~ardll~~LL~rdp~~RLg  270 (357)
T KOG0598|consen  222 KPPFYA---------EDVKKMYDKILKGKL------PLP-PG-------YLSEEARDLLKKLLKRDPRQRLG  270 (357)
T ss_pred             CCCCcC---------ccHHHHHHHHhcCcC------CCC-Cc-------cCCHHHHHHHHHHhccCHHHhcC
Confidence            999965         223333333332220      000 00       11256889999999999999963

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=5.6e-42  Score=272.40  Aligned_cols=205  Identities=25%  Similarity=0.317  Sum_probs=158.4

Q ss_pred             HHHHHHHHHHHHhcCCCcccceeeeeeeCC--cceEEEEecCCCCHHHhhcCCC--c---hHHHHHHHHHHHhchhhcCC
Q 044022           13 YGSCINNITYAAQMSHNHILKRIGCCLQTP--IPILVFQSVEYGTLRDCIFGAP--L---PRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~e~~~~~sL~~~l~~~~--~---~~~~~~~~i~~~l~~lh~~~   85 (241)
                      .+++.+|+++|.+|+|||||+++|......  .+++.|||+++|||.+++.+..  .   ....+..||+.||+|||   
T Consensus        58 ~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~i~mEy~~~GsL~~~~~~~g~~l~E~~v~~ytr~iL~GL~ylH---  134 (313)
T KOG0198|consen   58 SESLEREIRILSRLNHPNIVQYYGSSSSRENDEYNIFMEYAPGGSLSDLIKRYGGKLPEPLVRRYTRQILEGLAYLH---  134 (313)
T ss_pred             HHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeEeeeeccCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            667899999999999999999999744433  6899999999999999998764  1   46789999999999999   


Q ss_pred             CCCceeccCCCCCeeecC-CCCeEEeeccCceecCCCC-cceeecccccCCCccCccccccc-CCCcchhhHHHHHHHHH
Q 044022           86 PRPIVLRNFKTQNILFNE-ENVAKWFDFLLSISIPEGE-THITTDRVIGTRGYSAPEYISIC-VLNEKSNVFSFGAFLFE  162 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~-~~~~~l~df~~~~~~~~~~-~~~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~~~~  162 (241)
                      +++++||||||+|||++. ++.+||+|||.+....... .........||+.|||||++..+ ....++|||||||++.|
T Consensus       135 s~g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~~~~~~~~~~~~~~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtVvE  214 (313)
T KOG0198|consen  135 SKGIVHCDIKPANILLDPSNGDVKLADFGLAKKLESKGTKSDSELSVQGTPNYMAPEVIRNGEVARRESDIWSLGCTVVE  214 (313)
T ss_pred             hCCEeccCcccceEEEeCCCCeEEeccCccccccccccccccccccccCCccccCchhhcCCCcCCccchhhhcCCEEEe
Confidence            999999999999999999 7999999999987665311 11122346799999999999953 33459999999999999


Q ss_pred             HHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          163 LLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       163 ~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      |+||+.||...        ....+.........     ..+.++...        +....+|+.+|+..||++||||++
T Consensus       215 M~Tg~~PW~~~--------~~~~~~~~~ig~~~-----~~P~ip~~l--------s~~a~~Fl~~C~~~~p~~Rpta~e  272 (313)
T KOG0198|consen  215 MLTGKPPWSEF--------FEEAEALLLIGRED-----SLPEIPDSL--------SDEAKDFLRKCFKRDPEKRPTAEE  272 (313)
T ss_pred             ccCCCCcchhh--------cchHHHHHHHhccC-----CCCCCCccc--------CHHHHHHHHHHhhcCcccCcCHHH
Confidence            99999999652        00111111111111     111222222        256889999999999999999864

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=100.00  E-value=7.4e-41  Score=273.78  Aligned_cols=203  Identities=20%  Similarity=0.265  Sum_probs=164.3

Q ss_pred             cHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ..+-..+|-.+|.+| .||.|++++-.|.++..+|+|+||+++|.|.+++++.+.    ....++.+|+.||.|||   +
T Consensus       116 KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~sLYFvLe~A~nGdll~~i~K~Gsfde~caR~YAAeIldAleylH---~  192 (604)
T KOG0592|consen  116 KVKYVTREKEALTQLSGHPGIVKLYFTFQDEESLYFVLEYAPNGDLLDLIKKYGSFDETCARFYAAEILDALEYLH---S  192 (604)
T ss_pred             ccchhhHHHHHHHHhhCCCCeEEEEEEeecccceEEEEEecCCCcHHHHHHHhCcchHHHHHHHHHHHHHHHHHHH---h
Confidence            445566788999999 899999999999999999999999999999999987643    35678999999999999   9


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcc---------ee--ecccccCCCccCcccccccCCCcchhhHH
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH---------IT--TDRVIGTRGYSAPEYISICVLNEKSNVFS  155 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~---------~~--~~~~~~~~~~~aPE~~~~~~~~~~~Di~s  155 (241)
                      +|||||||||+|||++.+++++|+|||.++.+......         ..  ..+.+||..|.+||++.....++.+|+|+
T Consensus       193 ~GIIHRDlKPENILLd~dmhikITDFGsAK~l~~~~~~~~~~~~~~~a~s~~~SFVGTAeYVSPElL~~~~~~~~sDiWA  272 (604)
T KOG0592|consen  193 NGIIHRDLKPENILLDKDGHIKITDFGSAKILSPSQKSQENPVDPNQASSRRSSFVGTAEYVSPELLNDSPAGPSSDLWA  272 (604)
T ss_pred             cCceeccCChhheeEcCCCcEEEeeccccccCChhhccccCccCcccccCcccceeeeecccCHHHhcCCCCCcccchHH
Confidence            99999999999999999999999999999877543221         11  24588999999999999999999999999


Q ss_pred             HHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCC
Q 044022          156 FGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPED  235 (241)
Q Consensus       156 ~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~  235 (241)
                      |||++|.|+.|.+||.....         .-..+.... .      +-.+.+.++        +.+.+|+.+.|..||++
T Consensus       273 lGCilyQmlaG~PPFra~Ne---------yliFqkI~~-l------~y~fp~~fp--------~~a~dLv~KLLv~dp~~  328 (604)
T KOG0592|consen  273 LGCILYQMLAGQPPFRAANE---------YLIFQKIQA-L------DYEFPEGFP--------EDARDLIKKLLVRDPSD  328 (604)
T ss_pred             HHHHHHHHhcCCCCCccccH---------HHHHHHHHH-h------cccCCCCCC--------HHHHHHHHHHHccCccc
Confidence            99999999999999965211         111111111 0      111222222        67889999999999999


Q ss_pred             CCCCCC
Q 044022          236 RPTMVD  241 (241)
Q Consensus       236 Rpt~~e  241 (241)
                      |+|+.|
T Consensus       329 Rlt~~q  334 (604)
T KOG0592|consen  329 RLTSQQ  334 (604)
T ss_pred             cccHHH
Confidence            999753

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=100.00  E-value=2.4e-40  Score=272.27  Aligned_cols=215  Identities=21%  Similarity=0.337  Sum_probs=161.3

Q ss_pred             cccccccccccHHHHHHHHHHHHhc-CCCcccceeeeeeeCC-cceEEEEecCCCCHHHhhcCCC---------------
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQM-SHNHILKRIGCCLQTP-IPILVFQSVEYGTLRDCIFGAP---------------   64 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~-~~~lv~e~~~~~sL~~~l~~~~---------------   64 (241)
                      |.+...........+.+|+.++.++ +||||++++++|...+ ..++||||+++|+|.+++....               
T Consensus        43 K~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~  122 (338)
T cd05102          43 KMLKEGATASEHKALMSELKILIHIGNHLNVVNLLGACTKPNGPLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRG  122 (338)
T ss_pred             eccccccchHHHHHHHHHHHHHHHhccCcceeeEEeEecCCCCceEEEEecCCCCcHHHHHHhcchhcccccccchhhhh
Confidence            4444333334456789999999999 8999999999887644 5789999999999999886421               


Q ss_pred             ------------------------------------------------c---hHHHHHHHHHHHhchhhcCCCCCceecc
Q 044022           65 ------------------------------------------------L---PRLKIASDIVNSLAYLHFGFPRPIVLRN   93 (241)
Q Consensus        65 ------------------------------------------------~---~~~~~~~~i~~~l~~lh~~~~~~ivh~d   93 (241)
                                                                      .   ..+.++.|++.||.|||   +.+++|||
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrD  199 (338)
T cd05102         123 RFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPPQETDDLWKSPLTMEDLICYSFQVARGMEFLA---SRKCIHRD  199 (338)
T ss_pred             hhhhhhhhhccccccccccCCccccccccccCcccccchhccccccCCCCHHHHHHHHHHHHHHHHHHH---HCCEECCC
Confidence                                                            0   23568889999999999   89999999


Q ss_pred             CCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh-cCccccc
Q 044022           94 FKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWD  172 (241)
Q Consensus        94 l~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~-g~~p~~~  172 (241)
                      |||+|||++.++.++|+|||++................++..|+|||++.+..++.++||||||+++|+|++ |..||..
T Consensus       200 iKp~Nil~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~el~~~g~~pf~~  279 (338)
T cd05102         200 LAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPG  279 (338)
T ss_pred             CccceEEEcCCCcEEEeecccccccccCcchhcccCCCCCccccCcHHhhcCCCCcccCHHHHHHHHHHHHhCCCCCCCC
Confidence            999999999999999999999876543322222233456678999999998889999999999999999997 9999854


Q ss_pred             ccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          173 LLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ...         .+........+....     ...        ..+..+.+++.+||+.||++|||+.|
T Consensus       280 ~~~---------~~~~~~~~~~~~~~~-----~~~--------~~~~~l~~li~~cl~~dp~~RPs~~e  326 (338)
T cd05102         280 VQI---------NEEFCQRLKDGTRMR-----APE--------NATPEIYRIMLACWQGDPKERPTFSA  326 (338)
T ss_pred             CCc---------cHHHHHHHhcCCCCC-----CCC--------CCCHHHHHHHHHHccCChhhCcCHHH
Confidence            211         011111111111111     111        22357899999999999999999864

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>PHA02988 hypothetical protein; Provisional

Probab=100.00  E-value=3.8e-40  Score=264.77  Aligned_cols=199  Identities=18%  Similarity=0.215  Sum_probs=157.5

Q ss_pred             HHHHHHHHHHHHhcCCCcccceeeeeee----CCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcC
Q 044022           13 YGSCINNITYAAQMSHNHILKRIGCCLQ----TPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFG   84 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~----~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~   84 (241)
                      .+.|.+|+.++++++||||+++++++..    ....++||||+++|+|.+++.....    ..+.++.+++.|+.|||  
T Consensus        62 ~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~i~~~i~~~l~~lH--  139 (283)
T PHA02988         62 IDITENEIKNLRRIDSNNILKIYGFIIDIVDDLPRLSLILEYCTRGYLREVLDKEKDLSFKTKLDMAIDCCKGLYNLY--  139 (283)
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEeeeEEecccCCCceEEEEEeCCCCcHHHHHhhCCCCChhHHHHHHHHHHHHHHHHH--
Confidence            5778899999999999999999999876    3467999999999999999876532    46789999999999999  


Q ss_pred             CC-CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc--cCCCcchhhHHHHHHHH
Q 044022           85 FP-RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI--CVLNEKSNVFSFGAFLF  161 (241)
Q Consensus        85 ~~-~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~--~~~~~~~Di~s~G~~~~  161 (241)
                       + .+++||||||+||+++.++.+||+|||++.......     ....++..|+|||.+.+  ..++.++||||||+++|
T Consensus       140 -~~~~~~Hrdlkp~nill~~~~~~kl~dfg~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~k~Di~SlGvil~  213 (283)
T PHA02988        140 -KYTNKPYKNLTSVSFLVTENYKLKIICHGLEKILSSPP-----FKNVNFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLW  213 (283)
T ss_pred             -hcCCCCCCcCChhhEEECCCCcEEEcccchHhhhcccc-----ccccCcccccCHHHhhhccccccchhhhhHHHHHHH
Confidence             5 488899999999999999999999999987544322     22357889999999976  67899999999999999


Q ss_pred             HHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          162 ELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       162 ~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +|++|+.||....         ..+............     ....        ..+..+.+++.+||+.||++|||++|
T Consensus       214 el~~g~~Pf~~~~---------~~~~~~~i~~~~~~~-----~~~~--------~~~~~l~~li~~cl~~dp~~Rps~~e  271 (283)
T PHA02988        214 EIFTGKIPFENLT---------TKEIYDLIINKNNSL-----KLPL--------DCPLEIKCIVEACTSHDSIKRPNIKE  271 (283)
T ss_pred             HHHHCCCCCCCCC---------HHHHHHHHHhcCCCC-----CCCC--------cCcHHHHHHHHHHhcCCcccCcCHHH
Confidence            9999999996521         112222221111111     1111        22357899999999999999999864

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-40  Score=294.18  Aligned_cols=213  Identities=25%  Similarity=0.380  Sum_probs=174.2

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc-----------hHHHH
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL-----------PRLKI   70 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-----------~~~~~   70 (241)
                      |-.....+.+....|++|..+|..++|||||+++|+|......++++|||++|+|..||++...           ..+.+
T Consensus       728 K~l~~~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~~~~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~  807 (1025)
T KOG1095|consen  728 KSLKRLSSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLDSGPPLILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAF  807 (1025)
T ss_pred             EeccccCCHHHHHHHHHHHHHHhcCCCcceeeEEEeecCCCCcEEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHH
Confidence            4444555567788999999999999999999999999999999999999999999999987621           24789


Q ss_pred             HHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcc
Q 044022           71 ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEK  150 (241)
Q Consensus        71 ~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~  150 (241)
                      +.+|+.|+.||+   ++++|||||.++|+|++....+||+|||+++-+-............-+..|||||++....++.+
T Consensus       808 a~dvA~G~~YLe---~~~fvHRDLAaRNCLL~~~r~VKIaDFGlArDiy~~~yyr~~~~a~lPvkWm~PEsl~d~iFtsk  884 (1025)
T KOG1095|consen  808 ALDVAKGMNYLE---SKHFVHRDLAARNCLLDERRVVKIADFGLARDIYDKDYYRKHGEAMLPVKWMPPESLKDGIFTSK  884 (1025)
T ss_pred             HHHHhhhhHHHH---hCCCcCcchhhhheeecccCcEEEcccchhHhhhhchheeccCccccceecCCHHHHhhcccccc
Confidence            999999999999   99999999999999999999999999999985444333333333356788999999999999999


Q ss_pred             hhhHHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhc
Q 044022          151 SNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECV  229 (241)
Q Consensus       151 ~Di~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl  229 (241)
                      +|||||||++||++| |..||...         ...+.+......++   ...+.           .++..+.++|.+||
T Consensus       885 SDvWsFGVllWEifslG~~PY~~~---------~n~~v~~~~~~ggR---L~~P~-----------~CP~~ly~lM~~CW  941 (1025)
T KOG1095|consen  885 SDVWSFGVLLWEIFSLGATPYPSR---------SNFEVLLDVLEGGR---LDPPS-----------YCPEKLYQLMLQCW  941 (1025)
T ss_pred             cchhhhHHHHHHHHhCCCCCCCCc---------chHHHHHHHHhCCc---cCCCC-----------CCChHHHHHHHHHc
Confidence            999999999999999 88898653         23334444444442   12221           34467889999999


Q ss_pred             cCCCCCCCCCC
Q 044022          230 NNSPEDRPTMV  240 (241)
Q Consensus       230 ~~~p~~Rpt~~  240 (241)
                      +.+|++||++.
T Consensus       942 ~~~pe~RP~F~  952 (1025)
T KOG1095|consen  942 KHDPEDRPSFR  952 (1025)
T ss_pred             cCChhhCccHH
Confidence            99999999974

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=100.00  E-value=2.4e-41  Score=278.29  Aligned_cols=195  Identities=25%  Similarity=0.392  Sum_probs=163.4

Q ss_pred             HHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCCCCceecc
Q 044022           18 NNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFPRPIVLRN   93 (241)
Q Consensus        18 ~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~~~ivh~d   93 (241)
                      .+|+=|++|+||||+.|.|+|.+...+|||||||..|-|...|+....    ....|.++|+.|+.|||   .+.|+|||
T Consensus       161 TdIKHLRkLkH~NII~FkGVCtqsPcyCIiMEfCa~GqL~~VLka~~~itp~llv~Wsk~IA~GM~YLH---~hKIIHRD  237 (904)
T KOG4721|consen  161 TDIKHLRKLKHPNIITFKGVCTQSPCYCIIMEFCAQGQLYEVLKAGRPITPSLLVDWSKGIAGGMNYLH---LHKIIHRD  237 (904)
T ss_pred             hhHHHHHhccCcceeeEeeeecCCceeEEeeeccccccHHHHHhccCccCHHHHHHHHHHhhhhhHHHH---HhhHhhhc
Confidence            478889999999999999999999999999999999999999988643    34679999999999999   99999999


Q ss_pred             CCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcCcccccc
Q 044022           94 FKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDL  173 (241)
Q Consensus        94 l~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~~p~~~~  173 (241)
                      ||.-||||..+..+||+|||.++.....++..   +..||..|||||++...+.+.++|||||||++|||+||..||.+.
T Consensus       238 LKSPNiLIs~~d~VKIsDFGTS~e~~~~STkM---SFaGTVaWMAPEvIrnePcsEKVDIwSfGVVLWEmLT~EiPYkdV  314 (904)
T KOG4721|consen  238 LKSPNILISYDDVVKISDFGTSKELSDKSTKM---SFAGTVAWMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGEIPYKDV  314 (904)
T ss_pred             cCCCceEeeccceEEeccccchHhhhhhhhhh---hhhhhHhhhCHHHhhcCCcccccceehhHHHHHHHHhcCCCcccc
Confidence            99999999999999999999998776654433   357999999999999999999999999999999999999999774


Q ss_pred             cccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          174 LKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                      .....                  ++++-...+.-    +-...++..++-|+++||...|..||++.
T Consensus       315 dssAI------------------IwGVGsNsL~L----pvPstcP~GfklL~Kqcw~sKpRNRPSFr  359 (904)
T KOG4721|consen  315 DSSAI------------------IWGVGSNSLHL----PVPSTCPDGFKLLLKQCWNSKPRNRPSFR  359 (904)
T ss_pred             chhee------------------EEeccCCcccc----cCcccCchHHHHHHHHHHhcCCCCCccHH
Confidence            33221                  11221111111    11125567899999999999999999985

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=9.8e-40  Score=268.67  Aligned_cols=201  Identities=23%  Similarity=0.327  Sum_probs=161.9

Q ss_pred             cHHHHHHHHHHHHhcC-CCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQMS-HNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~-h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ..+...+|+.+++.++ ||||+++++++......++||||+.||.|.+++.....    ...+++.|++.|++|||   +
T Consensus        62 ~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~~~~ivmEy~~gGdL~~~i~~~g~l~E~~ar~~F~Qlisav~y~H---~  138 (370)
T KOG0583|consen   62 LDELIKREISILRRLRSHPNIIRLLEVFATPTKIYIVMEYCSGGDLFDYIVNKGRLKEDEARKYFRQLISAVAYCH---S  138 (370)
T ss_pred             cchhhHHHHHHHHHhccCCCEeEEEEEEecCCeEEEEEEecCCccHHHHHHHcCCCChHHHHHHHHHHHHHHHHHH---h
Confidence            4556668999999998 99999999999999999999999999999999977422    46789999999999999   9


Q ss_pred             CCceeccCCCCCeeecCC-CCeEEeeccCceecC-CCCcceeecccccCCCccCcccccccC-CC-cchhhHHHHHHHHH
Q 044022           87 RPIVLRNFKTQNILFNEE-NVAKWFDFLLSISIP-EGETHITTDRVIGTRGYSAPEYISICV-LN-EKSNVFSFGAFLFE  162 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~-~~~~l~df~~~~~~~-~~~~~~~~~~~~~~~~~~aPE~~~~~~-~~-~~~Di~s~G~~~~~  162 (241)
                      ++|+||||||+|+|++.+ +++||+|||++.... ...   .....+|++.|+|||++.+.. |+ .++||||+|+++|.
T Consensus       139 ~gi~HRDLK~ENilld~~~~~~Kl~DFG~s~~~~~~~~---~l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~  215 (370)
T KOG0583|consen  139 RGIVHRDLKPENILLDGNEGNLKLSDFGLSAISPGEDG---LLKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLGVILYV  215 (370)
T ss_pred             CCEeeCCCCHHHEEecCCCCCEEEeccccccccCCCCC---cccCCCCCcccCCHHHhCCCCCcCCchhhhhhhHHHHHH
Confidence            999999999999999999 999999999998773 222   235568999999999999876 75 78999999999999


Q ss_pred             HHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          163 LLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       163 ~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      |++|+.||.+..         ....... ...+.   ..-+....          +..+.+++.+||..||.+|+|+.|
T Consensus       216 ml~G~~PF~d~~---------~~~l~~k-i~~~~---~~~p~~~~----------S~~~~~Li~~mL~~~P~~R~t~~~  271 (370)
T KOG0583|consen  216 LLCGRLPFDDSN---------VPNLYRK-IRKGE---FKIPSYLL----------SPEARSLIEKMLVPDPSTRITLLE  271 (370)
T ss_pred             HHhCCCCCCCcc---------HHHHHHH-HhcCC---ccCCCCcC----------CHHHHHHHHHHcCCCcccCCCHHH
Confidence            999999997611         1111111 11111   11111100          367899999999999999999753

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=5.7e-40  Score=274.04  Aligned_cols=211  Identities=22%  Similarity=0.261  Sum_probs=171.3

Q ss_pred             Cccccccc--ccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHH
Q 044022            1 MKFYGHEY--HRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDI   74 (241)
Q Consensus         1 iK~~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i   74 (241)
                      ||+..+..  .........+|+-+|+.++|||+++++++|++..++|+|.||+++|.|++++...+.    ...+++.||
T Consensus        42 iKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~~lylvlEyv~gGELFdylv~kG~l~e~eaa~ff~QI  121 (786)
T KOG0588|consen   42 IKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQHLYLVLEYVPGGELFDYLVRKGPLPEREAAHFFRQI  121 (786)
T ss_pred             EEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeeccCceEEEEEEecCCchhHHHHHhhCCCCCHHHHHHHHHH
Confidence            45555443  223355578999999999999999999999999999999999999999999865532    578899999


Q ss_pred             HHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCC-cchhh
Q 044022           75 VNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLN-EKSNV  153 (241)
Q Consensus        75 ~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~-~~~Di  153 (241)
                      +.|+.|||   ..+|+|||+||+|+|++..+++||+|||.|.....+...   .+.+|++.|.|||++.+.+|+ .++||
T Consensus       122 i~gv~yCH---~~~icHRDLKpENlLLd~~~nIKIADFGMAsLe~~gklL---eTSCGSPHYA~PEIV~G~pYdG~~sDV  195 (786)
T KOG0588|consen  122 LDGVSYCH---AFNICHRDLKPENLLLDVKNNIKIADFGMASLEVPGKLL---ETSCGSPHYAAPEIVSGRPYDGRPSDV  195 (786)
T ss_pred             HHHHHHHh---hhcceeccCCchhhhhhcccCEeeeccceeecccCCccc---cccCCCcccCCchhhcCCCCCCCcccc
Confidence            99999999   999999999999999999999999999999765554432   345899999999999998775 78999


Q ss_pred             HHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCC
Q 044022          154 FSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSP  233 (241)
Q Consensus       154 ~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p  233 (241)
                      ||+|+|+|.+++|+.||++          ...+.+......|.+..      +...        +.+..+|+++|++.||
T Consensus       196 WSCGVILfALLtG~LPFdD----------dNir~LLlKV~~G~f~M------Ps~I--------s~eaQdLLr~ml~VDp  251 (786)
T KOG0588|consen  196 WSCGVILFALLTGKLPFDD----------DNIRVLLLKVQRGVFEM------PSNI--------SSEAQDLLRRMLDVDP  251 (786)
T ss_pred             chhHHHHHHHHhCCCCCCC----------ccHHHHHHHHHcCcccC------CCcC--------CHHHHHHHHHHhccCc
Confidence            9999999999999999975          12233334444454421      1222        2578899999999999


Q ss_pred             CCCCCCCC
Q 044022          234 EDRPTMVD  241 (241)
Q Consensus       234 ~~Rpt~~e  241 (241)
                      ++|.|.+|
T Consensus       252 ~~RiT~~e  259 (786)
T KOG0588|consen  252 STRITTEE  259 (786)
T ss_pred             cccccHHH
Confidence            99999764

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.4e-41  Score=270.51  Aligned_cols=213  Identities=20%  Similarity=0.258  Sum_probs=178.2

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVN   76 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~   76 (241)
                      ||+.+.+.........++|+.+|.+++++||.++|+.+..+..++++||||.||++.+.++....    ...-++++++.
T Consensus        43 iKii~Le~~~deIediqqei~~Ls~~~~~~it~yygsyl~g~~LwiiMey~~gGsv~~lL~~~~~~~E~~i~~ilre~l~  122 (467)
T KOG0201|consen   43 IKIIDLEEAEDEIEDIQQEISVLSQCDSPNITEYYGSYLKGTKLWIIMEYCGGGSVLDLLKSGNILDEFEIAVILREVLK  122 (467)
T ss_pred             EEEechhhcchhhHHHHHHHHHHHhcCcchHHhhhhheeecccHHHHHHHhcCcchhhhhccCCCCccceeeeehHHHHH
Confidence            57788888888899999999999999999999999999999999999999999999999987654    34457889999


Q ss_pred             HhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHH
Q 044022           77 SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSF  156 (241)
Q Consensus        77 ~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~  156 (241)
                      |+.|||   ..+.+|||||+.|||+..+|.+|++|||++..........  .+.+||++|||||++.+..|+.++|||||
T Consensus       123 ~l~ylH---~~~kiHrDIKaanil~s~~g~vkl~DfgVa~ql~~~~~rr--~tfvGTPfwMAPEVI~~~~Y~~KADIWSL  197 (467)
T KOG0201|consen  123 GLDYLH---SEKKIHRDIKAANILLSESGDVKLADFGVAGQLTNTVKRR--KTFVGTPFWMAPEVIKQSGYDTKADIWSL  197 (467)
T ss_pred             Hhhhhh---hcceecccccccceeEeccCcEEEEecceeeeeechhhcc--ccccccccccchhhhccccccchhhhhhh
Confidence            999999   9999999999999999999999999999998877654332  56789999999999998899999999999


Q ss_pred             HHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCC
Q 044022          157 GAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDR  236 (241)
Q Consensus       157 G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~R  236 (241)
                      |++.+||.+|.+|+.+.-..                       ...-.+....|+......+..+++|+..||.+||+.|
T Consensus       198 GITaiEla~GePP~s~~hPm-----------------------rvlflIpk~~PP~L~~~~S~~~kEFV~~CL~k~P~~R  254 (467)
T KOG0201|consen  198 GITAIELAKGEPPHSKLHPM-----------------------RVLFLIPKSAPPRLDGDFSPPFKEFVEACLDKNPEFR  254 (467)
T ss_pred             hHHHHHHhcCCCCCcccCcc-----------------------eEEEeccCCCCCccccccCHHHHHHHHHHhhcCcccC
Confidence            99999999999999662110                       0000111112222222455789999999999999999


Q ss_pred             CCCCC
Q 044022          237 PTMVD  241 (241)
Q Consensus       237 pt~~e  241 (241)
                      |||.+
T Consensus       255 psA~~  259 (467)
T KOG0201|consen  255 PSAKE  259 (467)
T ss_pred             cCHHH
Confidence            99864

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=100.00  E-value=1.2e-39  Score=264.38  Aligned_cols=221  Identities=19%  Similarity=0.291  Sum_probs=163.0

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----------------
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----------------   64 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----------------   64 (241)
                      |++..........+|.+|++++.+++||||+++++++...+..++||||+++++|.+++....                 
T Consensus        52 K~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~  131 (304)
T cd05096          52 KILRPDANKNARNDFLKEVKILSRLKDPNIIRLLGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHC  131 (304)
T ss_pred             EEecCCCCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEecCCceEEEEecCCCCcHHHHHHhccccccccccccccccccc
Confidence            444333333456679999999999999999999999999999999999999999999885421                 


Q ss_pred             ------chHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccC
Q 044022           65 ------LPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA  138 (241)
Q Consensus        65 ------~~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~a  138 (241)
                            ...++++.+++.||.|||   +.+++|+||||+|||++.++.+||+|||.+............+...++..|+|
T Consensus       132 ~~~~~~~~~~~i~~~i~~al~~lH---~~~ivH~dlkp~Nill~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~a  208 (304)
T cd05096         132 LPAISYSSLLHVALQIASGMKYLS---SLNFVHRDLATRNCLVGENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMA  208 (304)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHH---HCCccccCcchhheEEcCCccEEECCCccceecccCceeEecCcCCCCccccC
Confidence                  125689999999999999   89999999999999999999999999999876544332222233455778999


Q ss_pred             cccccccCCCcchhhHHHHHHHHHHHh--cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHH
Q 044022          139 PEYISICVLNEKSNVFSFGAFLFELLA--GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQ  216 (241)
Q Consensus       139 PE~~~~~~~~~~~Di~s~G~~~~~~~~--g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (241)
                      ||++....++.++||||||+++|+|++  +..||......      ...+............  ......+        .
T Consensus       209 PE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~~~------~~~~~~~~~~~~~~~~--~~~~~~~--------~  272 (304)
T cd05096         209 WECILMGKFTTASDVWAFGVTLWEILMLCKEQPYGELTDE------QVIENAGEFFRDQGRQ--VYLFRPP--------P  272 (304)
T ss_pred             HHHHhcCCCCchhhhHHHHHHHHHHHHccCCCCCCcCCHH------HHHHHHHHHhhhcccc--ccccCCC--------C
Confidence            999988889999999999999999987  55677542111      0111111111110000  0000011        1


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          217 QLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       217 ~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ++..+.+++.+||+.||++|||++|
T Consensus       273 ~~~~~~~li~~cl~~~p~~RPs~~~  297 (304)
T cd05096         273 CPQGLYELMLQCWSRDCRERPSFSD  297 (304)
T ss_pred             CCHHHHHHHHHHccCCchhCcCHHH
Confidence            2357899999999999999999864

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=6.1e-40  Score=245.21  Aligned_cols=209  Identities=22%  Similarity=0.363  Sum_probs=164.7

Q ss_pred             ccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC----CchHHHHHHHHHHHhchhh
Q 044022            7 EYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA----PLPRLKIASDIVNSLAYLH   82 (241)
Q Consensus         7 ~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~----~~~~~~~~~~i~~~l~~lh   82 (241)
                      ...+++.+.+.+|++|-+.|+|||||++.+.+...+..++|+|+++|+.|..-+-..    +...-.++.||+.+|.|+|
T Consensus        48 k~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~~~ylvFe~m~G~dl~~eIV~R~~ySEa~aSH~~rQiLeal~yCH  127 (355)
T KOG0033|consen   48 KLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAREFYSEADASHCIQQILEALAYCH  127 (355)
T ss_pred             hhccccHHHHHHHHHHHHhcCCCcEeehhhhhcccceeEEEEecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344468889999999999999999999999999999999999999999996544322    2245578999999999999


Q ss_pred             cCCCCCceeccCCCCCeeecC---CCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHH
Q 044022           83 FGFPRPIVLRNFKTQNILFNE---ENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAF  159 (241)
Q Consensus        83 ~~~~~~ivh~dl~~~nil~~~---~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~  159 (241)
                         .++|||||+||.|+++-.   ..-+|++|||++.....+...   ....|||.|+|||++...+++..+|||+.|++
T Consensus       128 ---~n~IvHRDvkP~nllLASK~~~A~vKL~~FGvAi~l~~g~~~---~G~~GtP~fmaPEvvrkdpy~kpvDiW~cGVi  201 (355)
T KOG0033|consen  128 ---SNGIVHRDLKPENLLLASKAKGAAVKLADFGLAIEVNDGEAW---HGFAGTPGYLSPEVLKKDPYSKPVDIWACGVI  201 (355)
T ss_pred             ---hcCceeccCChhheeeeeccCCCceeecccceEEEeCCcccc---ccccCCCcccCHHHhhcCCCCCcchhhhhhHH
Confidence               999999999999999953   346899999999988744332   23579999999999999999999999999999


Q ss_pred             HHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCC
Q 044022          160 LFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM  239 (241)
Q Consensus       160 ~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~  239 (241)
                      +|-++.|.+||++...          ..+......+.+ +.+.+.+         +.-+++.++|+++||..||++|.|+
T Consensus       202 LfiLL~G~~PF~~~~~----------~rlye~I~~g~y-d~~~~~w---------~~is~~Ak~LvrrML~~dP~kRIta  261 (355)
T KOG0033|consen  202 LYILLVGYPPFWDEDQ----------HRLYEQIKAGAY-DYPSPEW---------DTVTPEAKSLIRRMLTVNPKKRITA  261 (355)
T ss_pred             HHHHHhCCCCCCCccH----------HHHHHHHhcccc-CCCCccc---------CcCCHHHHHHHHHHhccChhhhccH
Confidence            9999999999976111          111111222221 1112222         2334678999999999999999998


Q ss_pred             CC
Q 044022          240 VD  241 (241)
Q Consensus       240 ~e  241 (241)
                      .|
T Consensus       262 ~E  263 (355)
T KOG0033|consen  262 DE  263 (355)
T ss_pred             HH
Confidence            64

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.6e-40  Score=274.18  Aligned_cols=206  Identities=22%  Similarity=0.328  Sum_probs=167.7

Q ss_pred             cccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc-----hHHHHHHHHHHHhchhh
Q 044022            8 YHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL-----PRLKIASDIVNSLAYLH   82 (241)
Q Consensus         8 ~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-----~~~~~~~~i~~~l~~lh   82 (241)
                      ..+....+|++|++++++++|||||+++|++..+..+++|||+|.||+|.++|++...     .++.++.+++.||+|||
T Consensus       200 ~~~~~~~e~m~EArvMr~l~H~NVVr~yGVa~~~~Pl~ivmEl~~gGsL~~~L~k~~~~v~~~ek~~~~~~AA~Gl~YLh  279 (474)
T KOG0194|consen  200 LTKEQIKEFMKEARVMRQLNHPNVVRFYGVAVLEEPLMLVMELCNGGSLDDYLKKNKKSLPTLEKLRFCYDAARGLEYLH  279 (474)
T ss_pred             ccHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCccEEEEEecCCCcHHHHHHhCCCCCCHHHHHHHHHHHHhHHHHHH
Confidence            4556788899999999999999999999999999999999999999999999988752     57889999999999999


Q ss_pred             cCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHH
Q 044022           83 FGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFE  162 (241)
Q Consensus        83 ~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~  162 (241)
                         +++++||||.++|+|++.++.+||+|||+++.......  ......-+..|+|||.+....++.++||||||+++||
T Consensus       280 ---~k~~IHRDIAARNcL~~~~~~vKISDFGLs~~~~~~~~--~~~~~klPirWLAPEtl~~~~~s~kTDV~sfGV~~~E  354 (474)
T KOG0194|consen  280 ---SKNCIHRDIAARNCLYSKKGVVKISDFGLSRAGSQYVM--KKFLKKLPIRWLAPETLNTGIFSFKTDVWSFGVLLWE  354 (474)
T ss_pred             ---HCCCcchhHhHHHheecCCCeEEeCccccccCCcceee--ccccccCcceecChhhhccCccccccchhheeeeEEe
Confidence               99999999999999999999999999999876542111  1112245788999999999999999999999999999


Q ss_pred             HHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          163 LLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       163 ~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                      +++ |..||...         ...+.......++.....+.             ..+..+..++.+||..||++|||+.
T Consensus       355 if~~g~~Py~g~---------~~~~v~~kI~~~~~r~~~~~-------------~~p~~~~~~~~~c~~~~p~~R~tm~  411 (474)
T KOG0194|consen  355 IFENGAEPYPGM---------KNYEVKAKIVKNGYRMPIPS-------------KTPKELAKVMKQCWKKDPEDRPTMS  411 (474)
T ss_pred             eeccCCCCCCCC---------CHHHHHHHHHhcCccCCCCC-------------CCHHHHHHHHHHhccCChhhccCHH
Confidence            998 78888542         22222222223333222222             3336788999999999999999985

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=100.00  E-value=5.4e-39  Score=245.65  Aligned_cols=193  Identities=23%  Similarity=0.263  Sum_probs=160.8

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ..++..+|.++|+.+.||+++++.+.|.+..+.+|||||.+||.|..++++..    .....++.+|+.|+.|||   ++
T Consensus        87 QveH~~nEk~vL~~v~~PFlv~l~~t~~d~~~lymvmeyv~GGElFS~Lrk~~rF~e~~arFYAAeivlAleylH---~~  163 (355)
T KOG0616|consen   87 QVEHTHNEKRVLKAVSHPFLVKLYGTFKDNSNLYMVMEYVPGGELFSYLRKSGRFSEPHARFYAAEIVLALEYLH---SL  163 (355)
T ss_pred             HHHHHhhHHHHHhhccCceeEEEEEeeccCCeEEEEEeccCCccHHHHHHhcCCCCchhHHHHHHHHHHHHHHHH---hc
Confidence            45667889999999999999999999999999999999999999999998742    356778999999999999   99


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcC
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR  167 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~  167 (241)
                      +|++|||||+|||+|++|.+||+|||+++..... +    -+.+||+.|+|||.+.+.++..++|.||||+++|||+.|.
T Consensus       164 ~iiYRDLKPENiLlD~~G~iKitDFGFAK~v~~r-T----~TlCGTPeYLAPEii~sk~ynkavDWWalGVLIYEMlaG~  238 (355)
T KOG0616|consen  164 DIIYRDLKPENLLLDQNGHIKITDFGFAKRVSGR-T----WTLCGTPEYLAPEIIQSKGYNKAVDWWALGVLIYEMLAGY  238 (355)
T ss_pred             CeeeccCChHHeeeccCCcEEEEeccceEEecCc-E----EEecCCccccChHHhhcCCCCcchhHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999999987654 2    3457999999999999999999999999999999999999


Q ss_pred             cccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCC
Q 044022          168 IHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDR  236 (241)
Q Consensus       168 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~R  236 (241)
                      +||++.+..        .-..+-+.....+..                -.+.++++|+...|+.|-++|
T Consensus       239 pPF~~~~~~--------~iY~KI~~~~v~fP~----------------~fs~~~kdLl~~LL~vD~t~R  283 (355)
T KOG0616|consen  239 PPFYDDNPI--------QIYEKILEGKVKFPS----------------YFSSDAKDLLKKLLQVDLTKR  283 (355)
T ss_pred             CCCcCCChH--------HHHHHHHhCcccCCc----------------ccCHHHHHHHHHHHhhhhHhh
Confidence            999773221        111111111111111                223578899999999999888

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=100.00  E-value=5.7e-40  Score=260.53  Aligned_cols=215  Identities=28%  Similarity=0.421  Sum_probs=161.9

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC---Cc---hHHHHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA---PL---PRLKIASDI   74 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~---~~---~~~~~~~~i   74 (241)
                      ||.+.........+.|.+|++.+++++||||++++|++...+..++|+||+++|+|.+++...   ..   .+..++.+|
T Consensus        33 vk~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~lv~e~~~~g~L~~~L~~~~~~~~~~~~~~~i~~~i  112 (259)
T PF07714_consen   33 VKILKPSSSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENEPLFLVMEYCPGGSLDDYLKSKNKEPLSEQQRLSIAIQI  112 (259)
T ss_dssp             EEEESTTSSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHH
T ss_pred             EEEeccccccccceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            455544444445789999999999999999999999999888899999999999999998765   21   578899999


Q ss_pred             HHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhH
Q 044022           75 VNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVF  154 (241)
Q Consensus        75 ~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~  154 (241)
                      +.||.|||   +.+++|++|+++||+++.++.+||+|||++.................+..|+|||.+....++.++|||
T Consensus       113 ~~~l~~Lh---~~~iiH~~l~~~nill~~~~~~Kl~~f~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~ksDVy  189 (259)
T PF07714_consen  113 AEALSYLH---SNNIIHGNLSPSNILLDSNGQVKLSDFGLSRPISEKSKYKNDSSQQLPLRYLAPEVLKDGEYTKKSDVY  189 (259)
T ss_dssp             HHHHHHHH---HTTEEEST-SGGGEEEETTTEEEEESTTTGEETTTSSSEEESTTSESGGGGS-HHHHHHSEESHHHHHH
T ss_pred             cccccccc---ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999   889999999999999999999999999999877433333333344567789999999988899999999


Q ss_pred             HHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCC
Q 044022          155 SFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSP  233 (241)
Q Consensus       155 s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p  233 (241)
                      |||+++||+++ |+.||.+.         ...+..... ..+.....+.             ..+..+.+++.+||+.||
T Consensus       190 sfG~~l~ei~~~~~~p~~~~---------~~~~~~~~~-~~~~~~~~~~-------------~~~~~~~~li~~C~~~~p  246 (259)
T PF07714_consen  190 SFGMLLYEILTLGKFPFSDY---------DNEEIIEKL-KQGQRLPIPD-------------NCPKDIYSLIQQCWSHDP  246 (259)
T ss_dssp             HHHHHHHHHHTTSSGTTTTS---------CHHHHHHHH-HTTEETTSBT-------------TSBHHHHHHHHHHT-SSG
T ss_pred             cccccccccccccccccccc---------ccccccccc-cccccceecc-------------chhHHHHHHHHHHcCCCh
Confidence            99999999999 67887542         122222222 2222211111             122578899999999999


Q ss_pred             CCCCCCCC
Q 044022          234 EDRPTMVD  241 (241)
Q Consensus       234 ~~Rpt~~e  241 (241)
                      .+|||+.|
T Consensus       247 ~~RPs~~~  254 (259)
T PF07714_consen  247 EKRPSFQE  254 (259)
T ss_dssp             GGS--HHH
T ss_pred             hhCcCHHH
Confidence            99999753

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=100.00  E-value=6.7e-40  Score=270.20  Aligned_cols=222  Identities=21%  Similarity=0.348  Sum_probs=181.7

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc------hHHHHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL------PRLKIASDI   74 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~------~~~~~~~~i   74 (241)
                      ||....+.+.+...+|.+|+++|.+|+|||||.++|+|..++.+|+|+||+++|+|.+|+.++..      +.++++.||
T Consensus       567 VK~Lr~~a~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~DePicmI~EYmEnGDLnqFl~aheapt~~t~~~vsi~tqi  646 (807)
T KOG1094|consen  567 VKILRPDATKNARNDFLKEIKILSRLKHPNIVELLGVCVQDDPLCMITEYMENGDLNQFLSAHELPTAETAPGVSICTQI  646 (807)
T ss_pred             EeecCcccchhHHHHHHHHHHHHhccCCCCeeEEEeeeecCCchHHHHHHHhcCcHHHHHHhccCcccccchhHHHHHHH
Confidence            57888888889999999999999999999999999999999999999999999999999988733      457899999


Q ss_pred             HHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhH
Q 044022           75 VNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVF  154 (241)
Q Consensus        75 ~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~  154 (241)
                      +.|++||.   +.++||||+.++|+|++.++++||+|||.++.+-........++.+.+..|+|||.+.-+.++.+||+|
T Consensus       647 asgmaYLe---s~nfVHrd~a~rNcLv~~e~~iKiadfgmsR~lysg~yy~vqgr~vlpiRwmawEsillgkFttaSDvW  723 (807)
T KOG1094|consen  647 ASGMAYLE---SLNFVHRDLATRNCLVDGEFTIKIADFGMSRNLYSGDYYRVQGRAVLPIRWMAWESILLGKFTTASDVW  723 (807)
T ss_pred             HHHHHHHH---hhchhhccccccceeecCcccEEecCcccccccccCCceeeecceeeeeeehhHHHHHhccccchhhhh
Confidence            99999999   999999999999999999999999999999977666555556677889999999999999999999999


Q ss_pred             HHHHHHHHHHh--cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCC
Q 044022          155 SFGAFLFELLA--GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNS  232 (241)
Q Consensus       155 s~G~~~~~~~~--g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~  232 (241)
                      +||+.+||+++  ...||.++.++.      ..+........+.     .....     ..+..++..+.++|.+||..|
T Consensus       724 afgvTlwE~~~~C~e~Py~~lt~e~------vven~~~~~~~~~-----~~~~l-----~~P~~cp~~lyelml~Cw~~e  787 (807)
T KOG1094|consen  724 AFGVTLWEVFMLCREQPYSQLTDEQ------VVENAGEFFRDQG-----RQVVL-----SRPPACPQGLYELMLRCWRRE  787 (807)
T ss_pred             hhHHHHHHHHHHHhhCchhhhhHHH------HHHhhhhhcCCCC-----cceec-----cCCCcCcHHHHHHHHHHhchh
Confidence            99999999886  678886643331      1111111111110     00000     111245577889999999999


Q ss_pred             CCCCCCCCC
Q 044022          233 PEDRPTMVD  241 (241)
Q Consensus       233 p~~Rpt~~e  241 (241)
                      -++|||+++
T Consensus       788 s~~RPsFe~  796 (807)
T KOG1094|consen  788 SEQRPSFEQ  796 (807)
T ss_pred             hhcCCCHHH
Confidence            999999863

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=100.00  E-value=8.5e-39  Score=262.39  Aligned_cols=164  Identities=24%  Similarity=0.303  Sum_probs=139.4

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHH
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNS   77 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~   77 (241)
                      |+...+.......++.+|++++++++||||+++++++...+..++||||+++++|.+++.....    ....++.+++.|
T Consensus        36 k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~  115 (331)
T cd06649          36 KLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKEAKRIPEEILGKVSIAVLRG  115 (331)
T ss_pred             EEeecccCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEeecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            3443333334456799999999999999999999999999999999999999999999865432    356889999999


Q ss_pred             hchhhcCCCC-CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHH
Q 044022           78 LAYLHFGFPR-PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSF  156 (241)
Q Consensus        78 l~~lh~~~~~-~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~  156 (241)
                      |.|||   +. +++|+||||+||+++.++.++|+|||++.......    .....++..|+|||++.+..++.++|||||
T Consensus       116 l~~lH---~~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~----~~~~~g~~~y~aPE~~~~~~~~~~~Diwsl  188 (331)
T cd06649         116 LAYLR---EKHQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM----ANSFVGTRSYMSPERLQGTHYSVQSDIWSM  188 (331)
T ss_pred             HHHHh---hcCCEEcCCCChhhEEEcCCCcEEEccCcccccccccc----cccCCCCcCcCCHhHhcCCCCCchHhHHHH
Confidence            99999   64 69999999999999999999999999987554322    133468899999999998889999999999


Q ss_pred             HHHHHHHHhcCccccc
Q 044022          157 GAFLFELLAGRIHIWD  172 (241)
Q Consensus       157 G~~~~~~~~g~~p~~~  172 (241)
                      |+++|+|++|+.||..
T Consensus       189 G~il~el~tg~~p~~~  204 (331)
T cd06649         189 GLSLVELAIGRYPIPP  204 (331)
T ss_pred             HHHHHHHHhCCCCCCC
Confidence            9999999999999954

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.5e-39  Score=246.66  Aligned_cols=203  Identities=23%  Similarity=0.344  Sum_probs=165.0

Q ss_pred             HHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCCC
Q 044022           13 YGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        13 ~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      .+.-.+|+.||+++ -||+|+++.++++.+...++|+|.|+.|.|.|++.+.-    ....++++|+..|+.|||   .+
T Consensus        66 ~EaT~~Ev~ILRqv~GHP~II~l~D~yes~sF~FlVFdl~prGELFDyLts~VtlSEK~tR~iMrqlfegVeylH---a~  142 (411)
T KOG0599|consen   66 REATRQEISILRQVMGHPYIIDLQDVYESDAFVFLVFDLMPRGELFDYLTSKVTLSEKETRRIMRQLFEGVEYLH---AR  142 (411)
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEeeeeccCcchhhhhhhhcccchHHHHhhhheeecHHHHHHHHHHHHHHHHHHH---Hh
Confidence            34456799999999 79999999999999999999999999999999998752    245689999999999999   99


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc------CCCcchhhHHHHHHHH
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC------VLNEKSNVFSFGAFLF  161 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~------~~~~~~Di~s~G~~~~  161 (241)
                      .||||||||+|||++++.+++|+|||++..+..+...   ...+||++|+|||.+...      .|+...|+||+|+|+|
T Consensus       143 ~IVHRDLKpENILlddn~~i~isDFGFa~~l~~GekL---relCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImy  219 (411)
T KOG0599|consen  143 NIVHRDLKPENILLDDNMNIKISDFGFACQLEPGEKL---RELCGTPGYLAPETIKCSMYENHPGYSKEVDEWACGVIMY  219 (411)
T ss_pred             hhhhcccChhheeeccccceEEeccceeeccCCchhH---HHhcCCCcccChhheeeecccCCCCccchhhHHHHHHHHH
Confidence            9999999999999999999999999999888766543   335899999999999643      5778899999999999


Q ss_pred             HHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          162 ELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       162 ~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      .++.|.+||+..-          .-.+.....++.+. +..         ++..+.+...++|+.+||+.||++|.|++|
T Consensus       220 TLLaGcpPFwHRk----------QmlMLR~ImeGkyq-F~s---------peWadis~~~KdLIsrlLqVdp~~Ritake  279 (411)
T KOG0599|consen  220 TLLAGCPPFWHRK----------QMLMLRMIMEGKYQ-FRS---------PEWADISATVKDLISRLLQVDPTKRITAKE  279 (411)
T ss_pred             HHHcCCCchhHHH----------HHHHHHHHHhcccc-cCC---------cchhhccccHHHHHHHHHeeCchhcccHHH
Confidence            9999999997610          11122222233321 111         222355567899999999999999999864

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=100.00  E-value=9.5e-39  Score=256.41  Aligned_cols=205  Identities=21%  Similarity=0.345  Sum_probs=161.6

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC--------------------chHHHH
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP--------------------LPRLKI   70 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~--------------------~~~~~~   70 (241)
                      ....+|.+|++++.+++||||+++++++...+..++++||+++++|.+++....                    ...+.+
T Consensus        50 ~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  129 (283)
T cd05048          50 KVQQEFRQEAELMSDLQHPNIVCLLGVCTKEQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHI  129 (283)
T ss_pred             HHHHHHHHHHHHHHhcCCcccceEEEEEcCCCceEEEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHH
Confidence            345678999999999999999999999998889999999999999999986531                    134678


Q ss_pred             HHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcc
Q 044022           71 ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEK  150 (241)
Q Consensus        71 ~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~  150 (241)
                      +.+++.||.|||   +.+++|+||||+||+++.++.++|+|||++................++..|+|||++....++.+
T Consensus       130 ~~~l~~al~~lH---~~~i~H~dlkp~Nil~~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  206 (283)
T cd05048         130 AIQIAAGMEYLS---SHHFVHRDLAARNCLVGEGLTVKISDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAILYGKFTTE  206 (283)
T ss_pred             HHHHHHHHHHHH---hCCeeccccccceEEEcCCCcEEECCCcceeeccccccccccCCCcccccccCHHHhccCcCchh
Confidence            999999999999   89999999999999999999999999999876543322222233456788999999988889999


Q ss_pred             hhhHHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhc
Q 044022          151 SNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECV  229 (241)
Q Consensus       151 ~Di~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl  229 (241)
                      +||||||+++|+|++ |..||.....         .+.... ...+.....     .        ...+..+.+|+.+||
T Consensus       207 sDv~slG~il~el~~~g~~p~~~~~~---------~~~~~~-i~~~~~~~~-----~--------~~~~~~~~~l~~~c~  263 (283)
T cd05048         207 SDIWSFGVVLWEIFSYGLQPYYGFSN---------QEVIEM-IRSRQLLPC-----P--------EDCPARVYALMIECW  263 (283)
T ss_pred             hhHHHHHHHHHHHHcCCCCCCCCCCH---------HHHHHH-HHcCCcCCC-----c--------ccCCHHHHHHHHHHc
Confidence            999999999999998 9999864211         111111 111111111     1        133468999999999


Q ss_pred             cCCCCCCCCCCC
Q 044022          230 NNSPEDRPTMVD  241 (241)
Q Consensus       230 ~~~p~~Rpt~~e  241 (241)
                      +.||.+|||+.|
T Consensus       264 ~~~p~~Rp~~~~  275 (283)
T cd05048         264 NEIPARRPRFKD  275 (283)
T ss_pred             cCChhhCcCHHH
Confidence            999999999864

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=1.6e-39  Score=265.03  Aligned_cols=204  Identities=22%  Similarity=0.318  Sum_probs=169.7

Q ss_pred             cccHHHHHHHHHHHHhcCCCcccceeeeeeeCCc-ceEEEEecCCCCHHHhhcCCC------chHHHHHHHHHHHhchhh
Q 044022           10 RHTYGSCINNITYAAQMSHNHILKRIGCCLQTPI-PILVFQSVEYGTLRDCIFGAP------LPRLKIASDIVNSLAYLH   82 (241)
Q Consensus        10 ~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~-~~lv~e~~~~~sL~~~l~~~~------~~~~~~~~~i~~~l~~lh   82 (241)
                      ....+...+|+.++++++|||||.+.+.|..++. .||||+||+||+|.+.+....      .....|+.|++.|+.|||
T Consensus        44 ~~~r~~A~~E~~lis~~~hP~iv~y~ds~~~~~~~l~Ivm~Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH  123 (426)
T KOG0589|consen   44 EPERRSAIQEMDLLSKLLHPNIVEYKDSFEEDGQLLCIVMEYCEGGDLAQLIKEQKGVLFPEERILKWFVQILLAVNYLH  123 (426)
T ss_pred             chhhHHHHHHHHHHHhccCCCeeeeccchhcCCceEEEEEeecCCCCHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH
Confidence            3455678999999999999999999999999988 999999999999999986553      256789999999999999


Q ss_pred             cCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHH
Q 044022           83 FGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFE  162 (241)
Q Consensus        83 ~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~  162 (241)
                         +..|+|||||+.|||+++++.++|+|||+++.+.....  ...+++||+.|++||.+.+.+|..++|||||||++||
T Consensus       124 ---~~~iLHRDlK~~Nifltk~~~VkLgDfGlaK~l~~~~~--~a~tvvGTp~YmcPEil~d~pYn~KSDiWsLGC~~yE  198 (426)
T KOG0589|consen  124 ---ENRVLHRDLKCANIFLTKDKKVKLGDFGLAKILNPEDS--LASTVVGTPYYMCPEILSDIPYNEKSDIWSLGCCLYE  198 (426)
T ss_pred             ---hhhhhcccchhhhhhccccCceeecchhhhhhcCCchh--hhheecCCCcccCHHHhCCCCCCccCcchhhcchHHH
Confidence               99999999999999999999999999999998876542  2255789999999999999999999999999999999


Q ss_pred             HHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          163 LLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       163 ~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      |++-+++|..         .......... .......++             ..++.+++.++..|+..+|..||++.|
T Consensus       199 m~~lk~aF~a---------~~m~~Li~ki-~~~~~~Plp-------------~~ys~el~~lv~~~l~~~P~~RPsa~~  254 (426)
T KOG0589|consen  199 MCTLKPAFKA---------SNMSELILKI-NRGLYSPLP-------------SMYSSELRSLVKSMLRKNPEHRPSALE  254 (426)
T ss_pred             HHhcccccCc---------cchHHHHHHH-hhccCCCCC-------------ccccHHHHHHHHHHhhcCCccCCCHHH
Confidence            9999999954         1112222111 111122211             256678999999999999999999853

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=100.00  E-value=4.1e-39  Score=268.13  Aligned_cols=215  Identities=20%  Similarity=0.332  Sum_probs=162.4

Q ss_pred             cccccccccccHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----------------
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----------------   64 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----------------   64 (241)
                      |.+...........+.+|+++++.+ +|+||++++++|...+..++||||+++|+|.+++....                
T Consensus        74 K~~~~~~~~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~  153 (374)
T cd05106          74 KMLKASAHTDEREALMSELKILSHLGQHKNIVNLLGACTHGGPVLVITEYCCYGDLLNFLRKKAETFLNFVMALPEISET  153 (374)
T ss_pred             EeccCCCCHHHHHHHHHHHHHHHhhccCCceeeEeeEecCCCCeEEeHhhccCCcHHHHHHhhhhhhccccccccccccc
Confidence            4443333333456788999999999 89999999999999999999999999999999874321                


Q ss_pred             ----------------------------------------------------------chHHHHHHHHHHHhchhhcCCC
Q 044022           65 ----------------------------------------------------------LPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        65 ----------------------------------------------------------~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                                                                                ....+++.|++.||.|||   +
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH---~  230 (374)
T cd05106         154 SSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVSSSSSQSSDSKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLA---S  230 (374)
T ss_pred             cccccccchhcccccccccccccccccccccCCccccccccccccchhccCCCCCcCHHHHHHHHHHHHHHHHHHH---H
Confidence                                                                      024678999999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh-
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA-  165 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~-  165 (241)
                      ++++||||||+|||++.++.++|+|||++................++..|+|||++....++.++||||||+++|+|++ 
T Consensus       231 ~giiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt~  310 (374)
T cd05106         231 KNCIHRDVAARNVLLTDGRVAKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSL  310 (374)
T ss_pred             CCEEeccCchheEEEeCCCeEEEeeceeeeeccCCcceeeccCCCCccceeCHHHhcCCCCCccccHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999876544332222223345667999999988889999999999999999997 


Q ss_pred             cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          166 GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       166 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      |+.||......         .........+.....     ..        ..+..+.+++.+||+.||++|||++|
T Consensus       311 G~~Pf~~~~~~---------~~~~~~~~~~~~~~~-----~~--------~~~~~l~~li~~cl~~dp~~RPs~~~  364 (374)
T cd05106         311 GKSPYPGILVN---------SKFYKMVKRGYQMSR-----PD--------FAPPEIYSIMKMCWNLEPTERPTFSQ  364 (374)
T ss_pred             CCCCCcccccc---------HHHHHHHHcccCccC-----CC--------CCCHHHHHHHHHHcCCChhhCcCHHH
Confidence            99999652111         111111111110000     01        11257899999999999999999864

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=100.00  E-value=1.7e-38  Score=254.43  Aligned_cols=214  Identities=23%  Similarity=0.338  Sum_probs=165.1

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----------------
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----------------   65 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----------------   65 (241)
                      |.+.........+++.+|+++++.++|+||+++++++...+..++||||+++++|.+++.....                
T Consensus        41 K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~  120 (280)
T cd05049          41 KTLKETASNDARKDFEREAELLTNFQHENIVKFYGVCTEGDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELT  120 (280)
T ss_pred             EeecccCCHHHHHHHHHHHHHHHhcCCCCchheeeEEecCCCeEEEEecCCCCCHHHHHHhcCCchhhhccccccccccc
Confidence            4443333333567899999999999999999999999999999999999999999999865321                


Q ss_pred             --hHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccc
Q 044022           66 --PRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYIS  143 (241)
Q Consensus        66 --~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~  143 (241)
                        ....++.+++.|+.+||   +.+++|+||||+||+++.++.++|+|||.+................++..|+|||++.
T Consensus       121 ~~~~~~~~~~i~~~l~~lH---~~~i~h~dlkp~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  197 (280)
T cd05049         121 LSQLLQIAVQIASGMVYLA---SQHFVHRDLATRNCLVGYDLVVKIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESIM  197 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHh---hCCeeccccccceEEEcCCCeEEECCcccceecccCcceecCCCCcccceecChhhhc
Confidence              34678999999999999   8999999999999999999999999999987543332222223334567899999999


Q ss_pred             ccCCCcchhhHHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHH
Q 044022          144 ICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASA  222 (241)
Q Consensus       144 ~~~~~~~~Di~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (241)
                      +..++.++||||||+++|+|++ |..||.....         .+..... ..+......     .        ..+..+.
T Consensus       198 ~~~~~~~~Di~slG~il~e~~~~g~~p~~~~~~---------~~~~~~~-~~~~~~~~~-----~--------~~~~~~~  254 (280)
T cd05049         198 YRKFTTESDVWSFGVVLWEIFTYGKQPWYGLSN---------EEVIECI-TQGRLLQRP-----R--------TCPSEVY  254 (280)
T ss_pred             cCCcchhhhHHHHHHHHHHHHhcCCCCCCCCCH---------HHHHHHH-HcCCcCCCC-----C--------CCCHHHH
Confidence            8999999999999999999998 9999854211         1111111 111111111     1        2235789


Q ss_pred             HHHHHhccCCCCCCCCCCC
Q 044022          223 QLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       223 ~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +++.+||..||++|||++|
T Consensus       255 ~li~~~l~~~p~~Rp~~~e  273 (280)
T cd05049         255 DIMLGCWKRDPQQRINIKD  273 (280)
T ss_pred             HHHHHHcCCCcccCCCHHH
Confidence            9999999999999999864

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-39  Score=261.42  Aligned_cols=214  Identities=20%  Similarity=0.226  Sum_probs=160.4

Q ss_pred             HHHHHHHHHhcC-CCcccceeeeeeeCC-cceEEEEecCCCCHHHhhcCCCc-----hHHHHHHHHHHHhchhhcCCCCC
Q 044022           16 CINNITYAAQMS-HNHILKRIGCCLQTP-IPILVFQSVEYGTLRDCIFGAPL-----PRLKIASDIVNSLAYLHFGFPRP   88 (241)
Q Consensus        16 ~~~e~~~l~~l~-h~~iv~~~~~~~~~~-~~~lv~e~~~~~sL~~~l~~~~~-----~~~~~~~~i~~~l~~lh~~~~~~   88 (241)
                      -+||++.|++|. ||||+++.+++.+.+ ++++|||||+ .+|+++++....     .+..|+.||++||+|+|   ++|
T Consensus        55 nLREvksL~kln~hpniikL~Evi~d~~~~L~fVfE~Md-~NLYqLmK~R~r~fse~~irnim~QilqGL~hiH---k~G  130 (538)
T KOG0661|consen   55 NLREVKSLRKLNPHPNIIKLKEVIRDNDRILYFVFEFMD-CNLYQLMKDRNRLFSESDIRNIMYQILQGLAHIH---KHG  130 (538)
T ss_pred             HHHHHHHHHhcCCCCcchhhHHHhhccCceEeeeHHhhh-hhHHHHHhhcCCcCCHHHHHHHHHHHHHHHHHHH---hcC
Confidence            358999999998 999999999999887 9999999997 699999987632     46789999999999999   999


Q ss_pred             ceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc-cCCCcchhhHHHHHHHHHHHhcC
Q 044022           89 IVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI-CVLNEKSNVFSFGAFLFELLAGR  167 (241)
Q Consensus        89 ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~~~~~~~g~  167 (241)
                      +.|||+||+|||+.....+||+|||+|+...+....   +..+.|..|+|||++.. +.|+.+.||||+|||++|+.+-+
T Consensus       131 fFHRDlKPENiLi~~~~~iKiaDFGLARev~SkpPY---TeYVSTRWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~sLr  207 (538)
T KOG0661|consen  131 FFHRDLKPENILISGNDVIKIADFGLAREVRSKPPY---TEYVSTRWYRAPEVLLRSGYYSSPVDMWAVGCIMAELYSLR  207 (538)
T ss_pred             cccccCChhheEecccceeEecccccccccccCCCc---chhhhcccccchHHhhhccccCCchHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999987665433   34578999999998864 57899999999999999999999


Q ss_pred             cccccccccC----------CCcccchHHH-HHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCC
Q 044022          168 IHIWDLLKDT----------HDHGCFFNEY-LKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDR  236 (241)
Q Consensus       168 ~p~~~~~~~~----------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~R  236 (241)
                      +-|....+.+          ......+.+. ...-.-+-.+.......+..-.+     ..+.+..+++.+|+++||.+|
T Consensus       208 PLFPG~sE~Dqi~KIc~VLGtP~~~~~~eg~~La~~mnf~~P~~~~~~l~~L~p-----~~s~~~~~li~~ll~WDP~kR  282 (538)
T KOG0661|consen  208 PLFPGASEIDQIYKICEVLGTPDKDSWPEGYNLASAMNFRFPQVKPSPLKDLLP-----NASSEAASLIERLLAWDPDKR  282 (538)
T ss_pred             ccCCCCcHHHHHHHHHHHhCCCccccchhHHHHHHHhccCCCcCCCCChHHhCc-----ccCHHHHHHHHHHhcCCCccC
Confidence            8885421110          0000000010 00000011111112111111111     245778999999999999999


Q ss_pred             CCCCC
Q 044022          237 PTMVD  241 (241)
Q Consensus       237 pt~~e  241 (241)
                      |||+|
T Consensus       283 pTA~~  287 (538)
T KOG0661|consen  283 PTASQ  287 (538)
T ss_pred             ccHHH
Confidence            99964

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=100.00  E-value=3.3e-39  Score=265.47  Aligned_cols=198  Identities=21%  Similarity=0.273  Sum_probs=167.8

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ..+...+|++|++.|+|||||.++++|+...++|+|+||+.| +|..++....    .+...++.+++.||.|||   +.
T Consensus        44 ~l~~l~~ev~i~r~lkHpniv~m~esfEt~~~~~vVte~a~g-~L~~il~~d~~lpEe~v~~~a~~LVsaL~yLh---s~  119 (808)
T KOG0597|consen   44 ELKNLRQEVRILRSLKHPNIVEMLESFETSAHLWVVTEYAVG-DLFTILEQDGKLPEEQVRAIAYDLVSALYYLH---SN  119 (808)
T ss_pred             HHHHHHHHHHHHHhcCCcchhhHHHhhcccceEEEEehhhhh-hHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH---hc
Confidence            456688999999999999999999999999999999999985 9999997653    267889999999999999   99


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcC
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR  167 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~  167 (241)
                      +|.|||+||+|||++..+.+|++|||+++.++....  ..++..||+.|||||...+.+|+..+|+||+|||+||+++|+
T Consensus       120 rilhrd~kPqniLl~~~~~~KlcdFg~Ar~m~~~t~--vltsikGtPlYmAPElv~e~pyd~~sDlWslGcilYE~~~G~  197 (808)
T KOG0597|consen  120 RILHRDMKPQNILLEKGGTLKLCDFGLARAMSTNTS--VLTSIKGTPLYMAPELVEEQPYDHTSDLWSLGCILYELYVGQ  197 (808)
T ss_pred             CcccccCCcceeeecCCCceeechhhhhhhcccCce--eeeeccCcccccCHHHHcCCCccchhhHHHHHHHHHHHhcCC
Confidence            999999999999999999999999999998776433  234567999999999999999999999999999999999999


Q ss_pred             cccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCC
Q 044022          168 IHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM  239 (241)
Q Consensus       168 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~  239 (241)
                      +||+.         ..+...++....+.....               ...+..+.+++...|.+||.+|.|=
T Consensus       198 PPF~a---------~si~~Lv~~I~~d~v~~p---------------~~~S~~f~nfl~gLL~kdP~~RltW  245 (808)
T KOG0597|consen  198 PPFYA---------RSITQLVKSILKDPVKPP---------------STASSSFVNFLQGLLIKDPAQRLTW  245 (808)
T ss_pred             CCchH---------HHHHHHHHHHhcCCCCCc---------------ccccHHHHHHHHHHhhcChhhcccH
Confidence            99965         233444444433332111               1445789999999999999999873

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=100.00  E-value=9.2e-39  Score=266.19  Aligned_cols=215  Identities=19%  Similarity=0.325  Sum_probs=162.6

Q ss_pred             cccccccccccHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----------------
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----------------   64 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----------------   64 (241)
                      |++.........+.+.+|++++..+ +||||++++++|...+..++||||+++|+|.+++....                
T Consensus        71 K~l~~~~~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~  150 (375)
T cd05104          71 KMLKPSAHLTEREALMSELKVLSYLGNHINIVNLLGACTVGGPTLVITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAAL  150 (375)
T ss_pred             EeccCCcCcHHHHHHHHHHHHHHHhcCCcceeeeeeeeccCCcceeeehhccCCcHHHHHHhcccccccccccchhhhHH
Confidence            4444333334566789999999999 89999999999999999999999999999999885321                


Q ss_pred             ---------------------------------------------------------------chHHHHHHHHHHHhchh
Q 044022           65 ---------------------------------------------------------------LPRLKIASDIVNSLAYL   81 (241)
Q Consensus        65 ---------------------------------------------------------------~~~~~~~~~i~~~l~~l   81 (241)
                                                                                     .....++.+|+.||.||
T Consensus       151 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~l  230 (375)
T cd05104         151 YKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADKRRSVRSGSYIDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFL  230 (375)
T ss_pred             HHhhhhhhcccchhhhhhhhcCCCcccccccccccccccccceecccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHH
Confidence                                                                           02356889999999999


Q ss_pred             hcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHH
Q 044022           82 HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLF  161 (241)
Q Consensus        82 h~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~  161 (241)
                      |   +.+++||||||+|||++.++.++|+|||++............+...++..|+|||++.+..++.++||||||+++|
T Consensus       231 H---~~~ivH~Dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDi~slG~~l~  307 (375)
T cd05104         231 A---SKNCIHRDLAARNILLTHGRITKICDFGLARDIRNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLW  307 (375)
T ss_pred             H---HCCeeccCCchhhEEEECCCcEEEecCccceeccCcccccccCCCCCCcceeChhHhcCCCCCCCCCHHHHHHHHH
Confidence            9   8999999999999999999999999999987654433222222334566799999999889999999999999999


Q ss_pred             HHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          162 ELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       162 ~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                      +|++ |..||......        .... .....+.....  +   .        ..+..+.+++.+||+.||++|||+.
T Consensus       308 ellt~g~~p~~~~~~~--------~~~~-~~~~~~~~~~~--~---~--------~~~~~l~~li~~cl~~dP~~RPs~~  365 (375)
T cd05104         308 EIFSLGSSPYPGMPVD--------SKFY-KMIKEGYRMLS--P---E--------CAPSEMYDIMKSCWDADPLKRPTFK  365 (375)
T ss_pred             HHHhcCCCCCCCCCch--------HHHH-HHHHhCccCCC--C---C--------CCCHHHHHHHHHHccCChhHCcCHH
Confidence            9998 88888552111        0111 11111111000  0   0        1124688999999999999999986


Q ss_pred             C
Q 044022          241 D  241 (241)
Q Consensus       241 e  241 (241)
                      |
T Consensus       366 e  366 (375)
T cd05104         366 Q  366 (375)
T ss_pred             H
Confidence            4

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.7e-39  Score=268.84  Aligned_cols=205  Identities=22%  Similarity=0.324  Sum_probs=170.9

Q ss_pred             cccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc------hHHHHHHHHHHHhchhhc
Q 044022           10 RHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL------PRLKIASDIVNSLAYLHF   83 (241)
Q Consensus        10 ~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~------~~~~~~~~i~~~l~~lh~   83 (241)
                      ....++|+.|+.+|+.++|||+|+++|+|..+..+|||+|||.+|+|.++|+....      ..+.++.||..|+.||. 
T Consensus       304 tMeveEFLkEAAvMKeikHpNLVqLLGVCT~EpPFYIiTEfM~yGNLLdYLRecnr~ev~avvLlyMAtQIsSaMeYLE-  382 (1157)
T KOG4278|consen  304 TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTHEPPFYIITEFMCYGNLLDYLRECNRSEVPAVVLLYMATQISSAMEYLE-  382 (1157)
T ss_pred             chhHHHHHHHHHHHHhhcCccHHHHhhhhccCCCeEEEEecccCccHHHHHHHhchhhcchhHHHHHHHHHHHHHHHHH-
Confidence            34678999999999999999999999999999999999999999999999987633      35688999999999999 


Q ss_pred             CCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHH
Q 044022           84 GFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL  163 (241)
Q Consensus        84 ~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~  163 (241)
                        .+.++||||.++|+|+..+..+|++|||+++.+..+.... .....-+..|.|||.+....++.++|||+||+++||+
T Consensus       383 --kknFIHRDLAARNCLVgEnhiVKvADFGLsRlMtgDTYTA-HAGAKFPIKWTAPEsLAyNtFSiKSDVWAFGVLLWEI  459 (1157)
T KOG4278|consen  383 --KKNFIHRDLAARNCLVGENHIVKVADFGLSRLMTGDTYTA-HAGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEI  459 (1157)
T ss_pred             --HhhhhhhhhhhhhccccccceEEeeccchhhhhcCCceec-ccCccCcccccCcccccccccccchhhHHHHHHHHHH
Confidence              9999999999999999999999999999999887653222 1223456789999999999999999999999999999


Q ss_pred             Hh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          164 LA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       164 ~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      .| |..||....          ...+..+.+.+...+.+             +.|++.+.+||+.||.++|++||++.|
T Consensus       460 ATYGMsPYPGid----------lSqVY~LLEkgyRM~~P-------------eGCPpkVYeLMraCW~WsPsDRPsFae  515 (1157)
T KOG4278|consen  460 ATYGMSPYPGID----------LSQVYGLLEKGYRMDGP-------------EGCPPKVYELMRACWNWSPSDRPSFAE  515 (1157)
T ss_pred             HhcCCCCCCCcc----------HHHHHHHHhccccccCC-------------CCCCHHHHHHHHHHhcCCcccCccHHH
Confidence            98 888885421          22344444444433322             256688999999999999999999864

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=100.00  E-value=1.8e-38  Score=255.28  Aligned_cols=202  Identities=19%  Similarity=0.284  Sum_probs=158.2

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC------chHHHHHHHHHHHhchhhcCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP------LPRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~------~~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ....+.+|++++++++|+||+++++++...+..++|+||+++|+|.+.+....      .....++.|++.||.|||   
T Consensus        43 ~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---  119 (285)
T cd05631          43 GEAMALNEKRILEKVNSRFVVSLAYAYETKDALCLVLTIMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQ---  119 (285)
T ss_pred             hHHHHHHHHHHHHhcCCCcEEEEEEEEccCCeEEEEEEecCCCcHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            34567899999999999999999999999999999999999999988764321      146778999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~  165 (241)
                      +.+++||||||+||+++.++.++|+|||++........   .....|+..|+|||++.+..++.++||||||+++|+|++
T Consensus       120 ~~~iiH~dikp~Nill~~~~~~kl~Dfg~~~~~~~~~~---~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~~  196 (285)
T cd05631         120 RERIVYRDLKPENILLDDRGHIRISDLGLAVQIPEGET---VRGRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQ  196 (285)
T ss_pred             hCCEEeCCCCHHHEEECCCCCEEEeeCCCcEEcCCCCe---ecCCCCCCCccCHhhhcCCCCCcccCchhHHHHHHHHHh
Confidence            99999999999999999999999999999876543321   123468999999999998899999999999999999999


Q ss_pred             cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCC
Q 044022          166 GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM  239 (241)
Q Consensus       166 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~  239 (241)
                      |+.||.......      ..+..........      .....        ..+..+.+|+++||+.||++|||+
T Consensus       197 g~~pf~~~~~~~------~~~~~~~~~~~~~------~~~~~--------~~s~~~~~li~~~l~~~P~~R~~~  250 (285)
T cd05631         197 GQSPFRKRKERV------KREEVDRRVKEDQ------EEYSE--------KFSEDAKSICRMLLTKNPKERLGC  250 (285)
T ss_pred             CCCCCCCCCcch------hHHHHHHHhhccc------ccCCc--------cCCHHHHHHHHHHhhcCHHHhcCC
Confidence            999996521110      0011111111110      00111        223578899999999999999985

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=100.00  E-value=9.5e-39  Score=264.28  Aligned_cols=215  Identities=18%  Similarity=0.222  Sum_probs=161.3

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCchHHHHHHHHHHHhchh
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDIVNSLAYL   81 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~i~~~l~~l   81 (241)
                      |++...........+.+|+++++.++|+||+++++++...+..++|+||+++++|.+...........++.+|+.||.||
T Consensus       105 K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~i~~qi~~aL~~L  184 (353)
T PLN00034        105 KVIYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMFDHNGEIQVLLEFMDGGSLEGTHIADEQFLADVARQILSGIAYL  184 (353)
T ss_pred             EEEecCCcHHHHHHHHHHHHHHHhCCCCCcceeeeEeccCCeEEEEEecCCCCcccccccCCHHHHHHHHHHHHHHHHHH
Confidence            44433333344567899999999999999999999999999999999999999998765444445678999999999999


Q ss_pred             hcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc-----cCCCcchhhHHH
Q 044022           82 HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI-----CVLNEKSNVFSF  156 (241)
Q Consensus        82 h~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-----~~~~~~~Di~s~  156 (241)
                      |   +.+++||||||+|||++.++.+||+|||++........  ......|+..|+|||++..     ...+.++|||||
T Consensus       185 H---~~~ivHrDlkp~NIll~~~~~~kL~DfG~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~Dvwsl  259 (353)
T PLN00034        185 H---RRHIVHRDIKPSNLLINSAKNVKIADFGVSRILAQTMD--PCNSSVGTIAYMSPERINTDLNHGAYDGYAGDIWSL  259 (353)
T ss_pred             H---HCCEeecCCCHHHEEEcCCCCEEEcccccceecccccc--cccccccCccccCccccccccccCcCCCcchhHHHH
Confidence            9   99999999999999999999999999999876543221  1123468999999998743     234568999999


Q ss_pred             HHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCC
Q 044022          157 GAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDR  236 (241)
Q Consensus       157 G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~R  236 (241)
                      |+++|+|++|+.||.....      ..+........... .     .....        ..+..+.+|+.+||+.||++|
T Consensus       260 Gvil~el~~g~~pf~~~~~------~~~~~~~~~~~~~~-~-----~~~~~--------~~~~~l~~li~~~l~~~P~~R  319 (353)
T PLN00034        260 GVSILEFYLGRFPFGVGRQ------GDWASLMCAICMSQ-P-----PEAPA--------TASREFRHFISCCLQREPAKR  319 (353)
T ss_pred             HHHHHHHHhCCCCCCCCCC------ccHHHHHHHHhccC-C-----CCCCC--------ccCHHHHHHHHHHccCChhhC
Confidence            9999999999999963111      11111111111000 0     00111        223578999999999999999


Q ss_pred             CCCCC
Q 044022          237 PTMVD  241 (241)
Q Consensus       237 pt~~e  241 (241)
                      ||+.|
T Consensus       320 pt~~e  324 (353)
T PLN00034        320 WSAMQ  324 (353)
T ss_pred             cCHHH
Confidence            99864

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=1.2e-38  Score=272.89  Aligned_cols=203  Identities=21%  Similarity=0.230  Sum_probs=160.7

Q ss_pred             HHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC-----Cc---hHHHHHHHHHHHhchhhcC
Q 044022           13 YGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA-----PL---PRLKIASDIVNSLAYLHFG   84 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~-----~~---~~~~~~~~i~~~l~~lh~~   84 (241)
                      ...+.+|+++++.++|||||++++++...+..++||||+++|+|.+++...     ..   ....++.|++.||.|||  
T Consensus       109 ~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH--  186 (478)
T PTZ00267        109 AAYARSELHCLAACDHFGIVKHFDDFKSDDKLLLIMEYGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVH--  186 (478)
T ss_pred             HHHHHHHHHHHHhCCCCCEeEEEEEEEECCEEEEEEECCCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH--
Confidence            446778999999999999999999999999999999999999999877432     11   35678899999999999  


Q ss_pred             CCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHH
Q 044022           85 FPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        85 ~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~  164 (241)
                       +++|+||||||+|||++.++.+||+|||++................||+.|+|||++.+..++.++||||||+++|+|+
T Consensus       187 -~~~ivHrDlkp~NIll~~~~~~kL~DFgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~  265 (478)
T PTZ00267        187 -SRKMMHRDLKSANIFLMPTGIIKLGDFGFSKQYSDSVSLDVASSFCGTPYYLAPELWERKRYSKKADMWSLGVILYELL  265 (478)
T ss_pred             -hCCEEECCcCHHhEEECCCCcEEEEeCcCceecCCccccccccccCCCccccCHhHhCCCCCCcHHhHHHHHHHHHHHH
Confidence             8999999999999999999999999999998765432222233456899999999999888999999999999999999


Q ss_pred             hcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          165 AGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       165 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +|+.||...         ...+....... +.....+     .        ..+..+.+++.+||..||++|||++|
T Consensus       266 tg~~Pf~~~---------~~~~~~~~~~~-~~~~~~~-----~--------~~s~~~~~li~~~L~~dP~~Rps~~~  319 (478)
T PTZ00267        266 TLHRPFKGP---------SQREIMQQVLY-GKYDPFP-----C--------PVSSGMKALLDPLLSKNPALRPTTQQ  319 (478)
T ss_pred             hCCCCCCCC---------CHHHHHHHHHh-CCCCCCC-----c--------cCCHHHHHHHHHHhccChhhCcCHHH
Confidence            999999541         11122222111 1111111     1        12256889999999999999999753

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-39  Score=268.78  Aligned_cols=217  Identities=23%  Similarity=0.330  Sum_probs=170.1

Q ss_pred             Cccccccc-ccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc-----hHHHHHHHH
Q 044022            1 MKFYGHEY-HRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL-----PRLKIASDI   74 (241)
Q Consensus         1 iK~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-----~~~~~~~~i   74 (241)
                      ||+++-+. ..+..+.|.+|+.++++-||.||+-++|+|...+. .||+.+|+|.||+.+++-...     +.+.|+.||
T Consensus       419 VK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~p~~-AIiTqwCeGsSLY~hlHv~etkfdm~~~idIAqQi  497 (678)
T KOG0193|consen  419 VKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLFMGACMNPPL-AIITQWCEGSSLYTHLHVQETKFDMNTTIDIAQQI  497 (678)
T ss_pred             EEEEecCCCCHHHHHHHHHHHHHHhhcchhhheeeehhhcCCce-eeeehhccCchhhhhccchhhhhhHHHHHHHHHHH
Confidence            45555332 23467889999999999999999999999988887 999999999999999875432     467899999


Q ss_pred             HHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc---cCCCcch
Q 044022           75 VNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI---CVLNEKS  151 (241)
Q Consensus        75 ~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~---~~~~~~~  151 (241)
                      +.|+.|||   .++|+|+|||..|||+..++.|||+|||++................|...|||||++..   .+|++.|
T Consensus       498 aqGM~YLH---AK~IIHrDLKSnNIFl~~~~kVkIgDFGLatvk~~w~g~~q~~qp~gsilwmAPEvIRmqd~nPfS~qS  574 (678)
T KOG0193|consen  498 AQGMDYLH---AKNIIHRDLKSNNIFLHEDLKVKIGDFGLATVKTRWSGEQQLEQPHGSLLWMAPEVIRMQDDNPFSFQS  574 (678)
T ss_pred             HHhhhhhh---hhhhhhhhccccceEEccCCcEEEecccceeeeeeeccccccCCCccchhhhcHHHHhhcccCCCCccc
Confidence            99999999   99999999999999999999999999999876655544444455678889999999964   4789999


Q ss_pred             hhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccC
Q 044022          152 NVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNN  231 (241)
Q Consensus       152 Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~  231 (241)
                      ||||||+++|||++|..||..-..+.            -++.-++....++....       ...+.+++++|+..||.+
T Consensus       575 DVYaFGiV~YELltg~lPysi~~~dq------------IifmVGrG~l~pd~s~~-------~s~~pk~mk~Ll~~C~~~  635 (678)
T KOG0193|consen  575 DVYAFGIVWYELLTGELPYSIQNRDQ------------IIFMVGRGYLMPDLSKI-------RSNCPKAMKRLLSDCWKF  635 (678)
T ss_pred             chhhhhHHHHHHHhCcCCcCCCChhh------------eEEEecccccCccchhh-------hccCHHHHHHHHHHHHhc
Confidence            99999999999999999996321111            11111111111221111       125557899999999999


Q ss_pred             CCCCCCCCC
Q 044022          232 SPEDRPTMV  240 (241)
Q Consensus       232 ~p~~Rpt~~  240 (241)
                      ++++||++.
T Consensus       636 ~~~eRP~F~  644 (678)
T KOG0193|consen  636 DREERPLFP  644 (678)
T ss_pred             CcccCccHH
Confidence            999999874

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=100.00  E-value=2.5e-38  Score=251.97  Aligned_cols=213  Identities=19%  Similarity=0.252  Sum_probs=161.8

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHH
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVN   76 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~   76 (241)
                      |.............|.+|+.++++++||||+++++++..++..++||||+++|+|.+++....     ...+.++.+++.
T Consensus        39 k~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~i~~  118 (266)
T cd05064          39 HTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRLEGVITRGNTMMIVTEYMSNGALDSFLRKHEGQLVAGQLMGMLPGLAS  118 (266)
T ss_pred             EecCCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEecCCCcEEEEEeCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence            344333333345678999999999999999999999999999999999999999999986542     146789999999


Q ss_pred             HhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHH
Q 044022           77 SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSF  156 (241)
Q Consensus        77 ~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~  156 (241)
                      ||+|||   +.+++||||||+||+++.++.++++|||.+......... ......++..|+|||.+.+..++.++|||||
T Consensus       119 al~~lH---~~~iiH~dikp~nili~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~sl  194 (266)
T cd05064         119 GMKYLS---EMGYVHKGLAAHKVLVNSDLVCKISGFRRLQEDKSEAIY-TTMSGKSPVLWAAPEAIQYHHFSSASDVWSF  194 (266)
T ss_pred             HHHHHH---HCCEeeccccHhhEEEcCCCcEEECCCcccccccccchh-cccCCCCceeecCHHHHhhCCccchhHHHHH
Confidence            999999   999999999999999999999999999987543222111 1112234567999999998899999999999


Q ss_pred             HHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCC
Q 044022          157 GAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPED  235 (241)
Q Consensus       157 G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~  235 (241)
                      |+++|++++ |..||....         ..+..... ..+...  +   ...        ..+..+.+++.+||+.+|++
T Consensus       195 G~~l~ell~~g~~p~~~~~---------~~~~~~~~-~~~~~~--~---~~~--------~~~~~~~~li~~c~~~~p~~  251 (266)
T cd05064         195 GIVMWEVMSYGERPYWDMS---------GQDVIKAV-EDGFRL--P---APR--------NCPNLLHQLMLDCWQKERGE  251 (266)
T ss_pred             HHHHHHHhcCCCCCcCcCC---------HHHHHHHH-HCCCCC--C---CCC--------CCCHHHHHHHHHHcCCCchh
Confidence            999999775 999996521         11112221 111111  1   111        23357889999999999999


Q ss_pred             CCCCCC
Q 044022          236 RPTMVD  241 (241)
Q Consensus       236 Rpt~~e  241 (241)
                      |||++|
T Consensus       252 RP~~~~  257 (266)
T cd05064         252 RPRFSQ  257 (266)
T ss_pred             CCCHHH
Confidence            999864

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.4e-38  Score=257.72  Aligned_cols=200  Identities=19%  Similarity=0.218  Sum_probs=159.5

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      .....+.+|+.++++++||||+++++++...+..++||||+++|+|.+++.....    ....++.|++.||.|||   +
T Consensus        35 ~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH---~  111 (312)
T cd05585          35 SEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLAFINGGELFHHLQREGRFDLSRARFYTAELLCALENLH---K  111 (312)
T ss_pred             hHHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEcCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---h
Confidence            3456788999999999999999999999999999999999999999998865422    45678899999999999   9


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhc
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      ++++||||||+||+++.++.++|+|||++........  ......|++.|+|||++.+..++.++||||||+++|+|++|
T Consensus       112 ~~i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg  189 (312)
T cd05585         112 FNVIYRDLKPENILLDYQGHIALCDFGLCKLNMKDDD--KTNTFCGTPEYLAPELLLGHGYTKAVDWWTLGVLLYEMLTG  189 (312)
T ss_pred             CCeEeCCCCHHHeEECCCCcEEEEECcccccCccCCC--ccccccCCcccCCHHHHcCCCCCCccceechhHHHHHHHhC
Confidence            9999999999999999999999999999875332221  12334689999999999988899999999999999999999


Q ss_pred             CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCC
Q 044022          167 RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM  239 (241)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~  239 (241)
                      +.||....         ..+.........       ..+..        ..+..+.+++.+||+.||++||++
T Consensus       190 ~~pf~~~~---------~~~~~~~~~~~~-------~~~~~--------~~~~~~~~li~~~L~~dp~~R~~~  238 (312)
T cd05585         190 LPPFYDEN---------VNEMYRKILQEP-------LRFPD--------GFDRDAKDLLIGLLSRDPTRRLGY  238 (312)
T ss_pred             CCCcCCCC---------HHHHHHHHHcCC-------CCCCC--------cCCHHHHHHHHHHcCCCHHHcCCC
Confidence            99996421         112222211110       01111        122568899999999999999875

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=100.00  E-value=1.2e-38  Score=260.56  Aligned_cols=198  Identities=17%  Similarity=0.219  Sum_probs=157.4

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ....+.+|++++++++||||+++++++...+..++||||+++++|.+++.....    ....++.||+.||.|||   +.
T Consensus        38 ~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~lH---~~  114 (323)
T cd05571          38 EVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRERVFSEDRARFYGAEIVSALGYLH---SC  114 (323)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---hC
Confidence            456688999999999999999999999999999999999999999998865432    45678899999999999   99


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcC
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR  167 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~  167 (241)
                      +++||||||+||+++.++.+||+|||++........  ......|++.|+|||++.+..++.++|||||||++|+|++|+
T Consensus       115 ~ivHrDlkp~NIll~~~~~~kl~DfG~a~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~  192 (323)
T cd05571         115 DVVYRDLKLENLMLDKDGHIKITDFGLCKEGISDGA--TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGR  192 (323)
T ss_pred             CeEeCCCCHHHEEECCCCCEEEeeCCCCcccccCCC--cccceecCccccChhhhcCCCCCccccCcccchhhhhhhcCC
Confidence            999999999999999999999999999865322211  112346899999999999888999999999999999999999


Q ss_pred             cccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCC
Q 044022          168 IHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT  238 (241)
Q Consensus       168 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt  238 (241)
                      .||....         ......... ...      ..+..        ..+..+.+++.+||+.||++||+
T Consensus       193 ~Pf~~~~---------~~~~~~~~~-~~~------~~~p~--------~~~~~~~~li~~~L~~dP~~R~~  239 (323)
T cd05571         193 LPFYNQD---------HEKLFELIL-MEE------IRFPR--------TLSPEAKSLLAGLLKKDPKQRLG  239 (323)
T ss_pred             CCCCCCC---------HHHHHHHHH-cCC------CCCCC--------CCCHHHHHHHHHHccCCHHHcCC
Confidence            9996521         111111111 110      01111        12356889999999999999994

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=100.00  E-value=3.3e-38  Score=252.68  Aligned_cols=204  Identities=18%  Similarity=0.301  Sum_probs=158.8

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC--------------chHHHHHHHHHHH
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP--------------LPRLKIASDIVNS   77 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~--------------~~~~~~~~~i~~~   77 (241)
                      ...+|.+|+.+++.++||||+++++++......++|+||+++++|.+++....              .....++.+++.|
T Consensus        52 ~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  131 (277)
T cd05062          52 ERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADG  131 (277)
T ss_pred             HHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCeEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHH
Confidence            45678899999999999999999999998899999999999999999986421              1356789999999


Q ss_pred             hchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHH
Q 044022           78 LAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFG  157 (241)
Q Consensus        78 l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G  157 (241)
                      |.|||   +.+++|+||||+||+++.++.++++|||.+................++..|+|||++.+..++.++||||||
T Consensus       132 l~~lH---~~~~vH~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG  208 (277)
T cd05062         132 MAYLN---ANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFG  208 (277)
T ss_pred             HHHHH---HCCcccCCcchheEEEcCCCCEEECCCCCccccCCcceeecCCCCccCHhhcChhHhhcCCcCchhHHHHHH
Confidence            99999   899999999999999999999999999998755433222222223456789999999988899999999999


Q ss_pred             HHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCC
Q 044022          158 AFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDR  236 (241)
Q Consensus       158 ~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~R  236 (241)
                      +++|+|++ |..||....         ..+...... ........     .        ..+..+.+++.+||+.||++|
T Consensus       209 ~~l~el~~~~~~p~~~~~---------~~~~~~~~~-~~~~~~~~-----~--------~~~~~~~~li~~~l~~~p~~R  265 (277)
T cd05062         209 VVLWEIATLAEQPYQGMS---------NEQVLRFVM-EGGLLDKP-----D--------NCPDMLFELMRMCWQYNPKMR  265 (277)
T ss_pred             HHHHHHHcCCCCCCCCCC---------HHHHHHHHH-cCCcCCCC-----C--------CCCHHHHHHHHHHcCCChhhC
Confidence            99999999 688885421         111111111 11111111     1        122568999999999999999


Q ss_pred             CCCCC
Q 044022          237 PTMVD  241 (241)
Q Consensus       237 pt~~e  241 (241)
                      ||+.|
T Consensus       266 ps~~e  270 (277)
T cd05062         266 PSFLE  270 (277)
T ss_pred             cCHHH
Confidence            99864

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=100.00  E-value=5e-38  Score=257.97  Aligned_cols=155  Identities=23%  Similarity=0.301  Sum_probs=134.9

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ....++.+|++++++++|+||++++++|...+..++||||+++++|.+++.....    ....++.+++.|+.|||   +
T Consensus        45 ~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~l~~~l~~lH---~  121 (333)
T cd06650          45 AIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLR---E  121 (333)
T ss_pred             HHHHHHHHHHHHHHHCCCCcccceeEEEEECCEEEEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---h
Confidence            3456789999999999999999999999999999999999999999999865432    35678899999999999   5


Q ss_pred             -CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh
Q 044022           87 -RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        87 -~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~  165 (241)
                       .+++|+||||+||+++.++.++|+|||++.......    .....++..|+|||++.+..++.++|+||||+++|++++
T Consensus       122 ~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~  197 (333)
T cd06650         122 KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM----ANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAI  197 (333)
T ss_pred             cCCEEecCCChhhEEEcCCCCEEEeeCCcchhhhhhc----cccCCCCccccCHHHhcCCCCCcHHHHHHHHHHHHHHHH
Confidence             479999999999999999999999999986543221    123467889999999998889999999999999999999


Q ss_pred             cCccccc
Q 044022          166 GRIHIWD  172 (241)
Q Consensus       166 g~~p~~~  172 (241)
                      |+.||..
T Consensus       198 g~~p~~~  204 (333)
T cd06650         198 GRYPIPP  204 (333)
T ss_pred             CCCCCCC
Confidence            9999864

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=100.00  E-value=4.8e-38  Score=253.50  Aligned_cols=204  Identities=23%  Similarity=0.348  Sum_probs=161.1

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC--------------------chHHHHH
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP--------------------LPRLKIA   71 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~--------------------~~~~~~~   71 (241)
                      ..+.+.+|++++++++|+||+++++++...+..++||||+++++|.+++....                    ..++.++
T Consensus        50 ~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  129 (291)
T cd05094          50 ARKDFQREAELLTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIA  129 (291)
T ss_pred             HHHHHHHHHHHHhcCCCCCcceEEEEEccCCceEEEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHH
Confidence            34678999999999999999999999999999999999999999999986432                    1357899


Q ss_pred             HHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcch
Q 044022           72 SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKS  151 (241)
Q Consensus        72 ~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~  151 (241)
                      .+|+.|++|||   +++++|+||||+||+++.++.++|+|||.+................++..|+|||++.+..++.++
T Consensus       130 ~~i~~al~~lH---~~~i~H~dlkp~Nil~~~~~~~~l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~  206 (291)
T cd05094         130 SQIASGMVYLA---SQHFVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTES  206 (291)
T ss_pred             HHHHHHHHHHH---hCCeeecccCcceEEEccCCcEEECCCCcccccCCCceeecCCCCCcceeecChHHhccCCCCchh
Confidence            99999999999   999999999999999999999999999998755443222222334567789999999988899999


Q ss_pred             hhHHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhcc
Q 044022          152 NVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVN  230 (241)
Q Consensus       152 Di~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~  230 (241)
                      ||||||+++|+|++ |..||.....         .+.. .....+......     .        ..+..+.+++.+||+
T Consensus       207 Di~slG~il~el~t~g~~p~~~~~~---------~~~~-~~~~~~~~~~~~-----~--------~~~~~~~~li~~~l~  263 (291)
T cd05094         207 DVWSFGVILWEIFTYGKQPWFQLSN---------TEVI-ECITQGRVLERP-----R--------VCPKEVYDIMLGCWQ  263 (291)
T ss_pred             hHHHHHHHHHHHHhCCCCCCCCCCH---------HHHH-HHHhCCCCCCCC-----c--------cCCHHHHHHHHHHcc
Confidence            99999999999998 9999855211         1111 111222111111     1        123568899999999


Q ss_pred             CCCCCCCCCCC
Q 044022          231 NSPEDRPTMVD  241 (241)
Q Consensus       231 ~~p~~Rpt~~e  241 (241)
                      .||++|||+.+
T Consensus       264 ~~P~~Rpt~~~  274 (291)
T cd05094         264 REPQQRLNIKE  274 (291)
T ss_pred             cChhhCcCHHH
Confidence            99999999853

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=100.00  E-value=9e-38  Score=249.04  Aligned_cols=210  Identities=20%  Similarity=0.292  Sum_probs=156.4

Q ss_pred             cccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc---------hHHHHHHHHHHHhch
Q 044022           10 RHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL---------PRLKIASDIVNSLAY   80 (241)
Q Consensus        10 ~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~---------~~~~~~~~i~~~l~~   80 (241)
                      ......|.+|+++++.++|+||+++++++......++||||+++|+|.+++.....         ....++.|++.|+.|
T Consensus        36 ~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~  115 (269)
T cd05042          36 PDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLEFCPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLW  115 (269)
T ss_pred             hHHHHHHHHHHHHHHhCCCCCcceEEEEECCCCceEEEEEeCCCCcHHHHHHhccccccccccHHHHHHHHHHHHHHHHH
Confidence            34456789999999999999999999999999999999999999999999865421         346789999999999


Q ss_pred             hhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc-------cCCCcchhh
Q 044022           81 LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI-------CVLNEKSNV  153 (241)
Q Consensus        81 lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-------~~~~~~~Di  153 (241)
                      ||   +++++||||||+||+++.++.++|+|||.+................++..|+|||++..       ..++.++||
T Consensus       116 lH---~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~Di  192 (269)
T cd05042         116 LH---QADFIHSDLALRNCQLTADLSVKIGDYGLALEQYPEDYYITKDCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNI  192 (269)
T ss_pred             HH---hcCEecccccHhheEecCCCcEEEeccccccccccchheeccCCCCCcccccCHHHHhhccccccccccchhhHH
Confidence            99   89999999999999999999999999999865433221112223345677999998743       356789999


Q ss_pred             HHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCC
Q 044022          154 FSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNS  232 (241)
Q Consensus       154 ~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~  232 (241)
                      ||||+++|+|++ |..||.....         .+......... ....+.+.+..        ..+..+.+++..|| .|
T Consensus       193 wslG~~l~el~~~~~~p~~~~~~---------~~~~~~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~~~~~-~d  253 (269)
T cd05042         193 WSLGVTMWELFTAADQPYPDLSD---------EQVLKQVVREQ-DIKLPKPQLDL--------KYSDRWYEVMQFCW-LD  253 (269)
T ss_pred             HHHHHHHHHHHhCCCCCCCcCCH---------HHHHHHHhhcc-CccCCCCcccc--------cCCHHHHHHHHHHh-cC
Confidence            999999999999 7788854211         11111111111 11222222222        22356778999999 59


Q ss_pred             CCCCCCCCC
Q 044022          233 PEDRPTMVD  241 (241)
Q Consensus       233 p~~Rpt~~e  241 (241)
                      |++|||++|
T Consensus       254 p~~Rpt~~~  262 (269)
T cd05042         254 PETRPTAEE  262 (269)
T ss_pred             cccccCHHH
Confidence            999999864

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=100.00  E-value=3e-38  Score=258.91  Aligned_cols=196  Identities=19%  Similarity=0.233  Sum_probs=158.0

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ..+.+.+|++++++++||||+++++++...+..++||||+++++|.+++.....    ....++.|++.||.|||   +.
T Consensus        61 ~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH---~~  137 (329)
T PTZ00263         61 QVQHVAQEKSILMELSHPFIVNMMCSFQDENRVYFLLEFVVGGELFTHLRKAGRFPNDVAKFYHAELVLAFEYLH---SK  137 (329)
T ss_pred             hHHHHHHHHHHHHhCCCCCCCcEEEEEEcCCEEEEEEcCCCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HC
Confidence            456788999999999999999999999999999999999999999998865432    35567899999999999   99


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcC
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR  167 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~  167 (241)
                      +++||||||+|||++.++.+||+|||++.......     ....|++.|+|||++.+..++.++||||||+++|+|++|.
T Consensus       138 ~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~  212 (329)
T PTZ00263        138 DIIYRDLKPENLLLDNKGHVKVTDFGFAKKVPDRT-----FTLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGY  212 (329)
T ss_pred             CeeecCCCHHHEEECCCCCEEEeeccCceEcCCCc-----ceecCChhhcCHHHHcCCCCCCcceeechHHHHHHHHcCC
Confidence            99999999999999999999999999987654332     2246889999999999888999999999999999999999


Q ss_pred             cccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCC
Q 044022          168 IHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM  239 (241)
Q Consensus       168 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~  239 (241)
                      .||....         ..+...... .+.. .     +...        .+..+.+++.+||+.||++||+.
T Consensus       213 ~pf~~~~---------~~~~~~~i~-~~~~-~-----~p~~--------~~~~~~~li~~~L~~dP~~R~~~  260 (329)
T PTZ00263        213 PPFFDDT---------PFRIYEKIL-AGRL-K-----FPNW--------FDGRARDLVKGLLQTDHTKRLGT  260 (329)
T ss_pred             CCCCCCC---------HHHHHHHHh-cCCc-C-----CCCC--------CCHHHHHHHHHHhhcCHHHcCCC
Confidence            9995421         111111111 1110 0     1111        12467899999999999999984

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=100.00  E-value=5.7e-38  Score=252.72  Aligned_cols=204  Identities=23%  Similarity=0.335  Sum_probs=160.4

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----------------chHHHHHHHH
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----------------LPRLKIASDI   74 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----------------~~~~~~~~~i   74 (241)
                      ..+.+.+|++++++++||||+++++++...+..++|+||+++++|.+++....                 ...+.++.++
T Consensus        50 ~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql  129 (288)
T cd05093          50 ARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQI  129 (288)
T ss_pred             HHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEEEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999986432                 1457889999


Q ss_pred             HHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhH
Q 044022           75 VNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVF  154 (241)
Q Consensus        75 ~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~  154 (241)
                      +.||+|||   +.+++||||||+||+++.++.++|+|||.+............+...++..|+|||++.+..++.++|+|
T Consensus       130 ~~aL~~lH---~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiw  206 (288)
T cd05093         130 AAGMVYLA---SQHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVW  206 (288)
T ss_pred             HHHHHHHH---hCCeeecccCcceEEEccCCcEEeccCCccccccCCceeecCCCCCccccccCHHHhccCCCCchhhHH
Confidence            99999999   999999999999999999999999999998765433222222233456789999999988899999999


Q ss_pred             HHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCC
Q 044022          155 SFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSP  233 (241)
Q Consensus       155 s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p  233 (241)
                      |||+++|+|++ |..||.....         .+.... ...+.....     ..        ..+..+.+++.+||+.||
T Consensus       207 slG~il~~l~t~g~~p~~~~~~---------~~~~~~-i~~~~~~~~-----~~--------~~~~~l~~li~~~l~~~p  263 (288)
T cd05093         207 SLGVVLWEIFTYGKQPWYQLSN---------NEVIEC-ITQGRVLQR-----PR--------TCPKEVYDLMLGCWQREP  263 (288)
T ss_pred             HHHHHHHHHHhCCCCCCCCCCH---------HHHHHH-HHcCCcCCC-----CC--------CCCHHHHHHHHHHccCCh
Confidence            99999999998 8999854211         111111 111211111     11        122568999999999999


Q ss_pred             CCCCCCCC
Q 044022          234 EDRPTMVD  241 (241)
Q Consensus       234 ~~Rpt~~e  241 (241)
                      .+|||+.|
T Consensus       264 ~~Rpt~~~  271 (288)
T cd05093         264 HMRLNIKE  271 (288)
T ss_pred             hhCCCHHH
Confidence            99999864

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=8.1e-38  Score=248.74  Aligned_cols=213  Identities=24%  Similarity=0.292  Sum_probs=169.9

Q ss_pred             Cccccccc--ccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc------hHHHHHH
Q 044022            1 MKFYGHEY--HRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL------PRLKIAS   72 (241)
Q Consensus         1 iK~~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~------~~~~~~~   72 (241)
                      ||+..+++  .+....+.+.|-+||+.+.||.++.+|+.|+.++..|++||||+||+|...+++.+.      .+..++.
T Consensus       107 mKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~~~~cl~meyCpGGdL~~LrqkQp~~~fse~~aRFYaA  186 (459)
T KOG0610|consen  107 MKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFETDKYSCLVMEYCPGGDLHSLRQKQPGKRFSESAARFYAA  186 (459)
T ss_pred             EEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeeccceeEEEEecCCCccHHHHHhhCCCCccchhhHHHHHH
Confidence            46666555  346677888899999999999999999999999999999999999999999887643      3456899


Q ss_pred             HHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCC--------------------------------
Q 044022           73 DIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPE--------------------------------  120 (241)
Q Consensus        73 ~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~--------------------------------  120 (241)
                      +++.||.|||   -.|||.|||||+|||+.++|++-|+||.++.....                                
T Consensus       187 Evl~ALEYLH---mlGivYRDLKPENILvredGHIMLsDFDLS~~~~~~Pt~~~s~~~~~~~~~~~~~~~~~s~f~~r~~  263 (459)
T KOG0610|consen  187 EVLLALEYLH---MLGIVYRDLKPENILVREDGHIMLSDFDLSLRCPVSPTLVKSSSPRSSGSQPSCRSRQPSCFSPRCL  263 (459)
T ss_pred             HHHHHHHHHH---hhceeeccCCcceeEEecCCcEEeeeccccccCCCCCeeeccCCCCCCCCCcccccccccccccchh
Confidence            9999999999   89999999999999999999999999988643211                                


Q ss_pred             -C-C--------------------cceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcCcccccccccCC
Q 044022          121 -G-E--------------------THITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTH  178 (241)
Q Consensus       121 -~-~--------------------~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~~p~~~~~~~~~  178 (241)
                       . .                    ......+.+||..|+|||++.+...+.++|.|+||+++|||+.|.-||..      
T Consensus       264 ~~~~~~~k~~~~~~~~~p~~~aep~~~RSnSFVGThEYlAPEvI~G~GHgsAVDWWtfGIflYEmLyG~TPFKG------  337 (459)
T KOG0610|consen  264 SSSKKRKKKDESASRSLPELVAEPTGARSNSFVGTHEYLAPEVIRGEGHGSAVDWWTFGIFLYEMLYGTTPFKG------  337 (459)
T ss_pred             ccccccccccccccccchhhhcCCCCccccccccccccccceeeecCCCCchhhHHHHHHHHHHHHhCCCCcCC------
Confidence             0 0                    00122356799999999999999999999999999999999999999954      


Q ss_pred             CcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCC
Q 044022          179 DHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT  238 (241)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt  238 (241)
                         ....+...+......  ..+.      .     ...+.++++||++.|.+||++|.-
T Consensus       338 ---~~~~~Tl~NIv~~~l--~Fp~------~-----~~vs~~akDLIr~LLvKdP~kRlg  381 (459)
T KOG0610|consen  338 ---SNNKETLRNIVGQPL--KFPE------E-----PEVSSAAKDLIRKLLVKDPSKRLG  381 (459)
T ss_pred             ---CCchhhHHHHhcCCC--cCCC------C-----CcchhHHHHHHHHHhccChhhhhc
Confidence               333444444433221  1111      1     133457899999999999999976

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=100.00  E-value=7.3e-38  Score=247.21  Aligned_cols=206  Identities=22%  Similarity=0.298  Sum_probs=158.1

Q ss_pred             cccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC--c---hHHHHHHHHHHHhchhhcC
Q 044022           10 RHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP--L---PRLKIASDIVNSLAYLHFG   84 (241)
Q Consensus        10 ~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~--~---~~~~~~~~i~~~l~~lh~~   84 (241)
                      ......+.+|++++++++||||+++++++......++|+||+++++|.+++....  .   ....++.+++.||.|||  
T Consensus        34 ~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH--  111 (252)
T cd05084          34 PDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGPRLKVKELIQMVENAAAGMEYLE--  111 (252)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCeEEEEeeccCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH--
Confidence            3446779999999999999999999999999999999999999999999986432  1   45778999999999999  


Q ss_pred             CCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHH
Q 044022           85 FPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        85 ~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~  164 (241)
                       +.+++|+||+|+||+++.++.++|+|||.+.................+..|+|||.+.+..++.++|+||||+++|+++
T Consensus       112 -~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~e~~  190 (252)
T cd05084         112 -SKHCIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYASTGGMKQIPVKWTAPEALNYGRYSSESDVWSFGILLWEAF  190 (252)
T ss_pred             -hCCccccccchheEEEcCCCcEEECccccCcccccccccccCCCCCCceeecCchhhcCCCCChHHHHHHHHHHHHHHH
Confidence             9999999999999999999999999999987543321111111112345699999998888999999999999999999


Q ss_pred             h-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          165 A-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       165 ~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      + |..||.....         ....... ........     ..        ..+..+.+++.+||..+|++|||+.|
T Consensus       191 ~~~~~p~~~~~~---------~~~~~~~-~~~~~~~~-----~~--------~~~~~~~~li~~~l~~~p~~Rps~~~  245 (252)
T cd05084         191 SLGAVPYANLSN---------QQTREAI-EQGVRLPC-----PE--------LCPDAVYRLMERCWEYDPGQRPSFST  245 (252)
T ss_pred             hCCCCCccccCH---------HHHHHHH-HcCCCCCC-----cc--------cCCHHHHHHHHHHcCCChhhCcCHHH
Confidence            8 8888854211         1111111 11110010     11        22357889999999999999999864

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.5e-38  Score=255.22  Aligned_cols=195  Identities=23%  Similarity=0.253  Sum_probs=157.6

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ..+.+.+|++++++++||||+++++++...+..++||||+++++|.+++.....    ....++.|++.||.|||   ++
T Consensus        44 ~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~  120 (291)
T cd05612          44 QEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRFLYMLMEYVPGGELFSYLRNSGRFSNSTGLFYASEIVCALEYLH---SK  120 (291)
T ss_pred             HHHHHHHHHHHHHhCCCCcHhhhHhhhccCCeEEEEEeCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HC
Confidence            456688999999999999999999999999999999999999999999865432    45678999999999999   99


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcC
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR  167 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~  167 (241)
                      +++||||||+||+++.++.++|+|||++.......     ....|++.|+|||++.+..++.++||||||+++|+|++|+
T Consensus       121 ~i~H~dlkp~NIli~~~~~~kl~Dfg~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~~l~~g~  195 (291)
T cd05612         121 EIVYRDLKPENILLDKEGHIKLTDFGFAKKLRDRT-----WTLCGTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGY  195 (291)
T ss_pred             CeeecCCCHHHeEECCCCCEEEEecCcchhccCCc-----ccccCChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999987654321     2346889999999999888999999999999999999999


Q ss_pred             cccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCC
Q 044022          168 IHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT  238 (241)
Q Consensus       168 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt  238 (241)
                      .||....         ..+......... .      .+..        ..+..+.+++.+||+.||.+||+
T Consensus       196 ~pf~~~~---------~~~~~~~i~~~~-~------~~~~--------~~~~~~~~li~~~l~~dp~~R~~  242 (291)
T cd05612         196 PPFFDDN---------PFGIYEKILAGK-L------EFPR--------HLDLYAKDLIKKLLVVDRTRRLG  242 (291)
T ss_pred             CCCCCCC---------HHHHHHHHHhCC-c------CCCc--------cCCHHHHHHHHHHcCCCHHHccC
Confidence            9995421         111111111111 0      0111        11256889999999999999996

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=100.00  E-value=6.6e-38  Score=255.55  Aligned_cols=213  Identities=20%  Similarity=0.275  Sum_probs=162.0

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc-----hHHHHHHHHHH
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL-----PRLKIASDIVN   76 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-----~~~~~~~~i~~   76 (241)
                      |.+.........+++.+|+.+++.++||||++++++|... ..++++||+++|+|.+++.....     ..+.++.+++.
T Consensus        42 K~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~-~~~~v~e~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~  120 (316)
T cd05108          42 KELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAK  120 (316)
T ss_pred             EeccccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCC-CceeeeecCCCCCHHHHHHhccccCCHHHHHHHHHHHHH
Confidence            4443333334567899999999999999999999999765 46899999999999999876431     45788999999


Q ss_pred             HhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHH
Q 044022           77 SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSF  156 (241)
Q Consensus        77 ~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~  156 (241)
                      ||+|||   +.+++||||||+||+++.++.+||+|||++.................+..|+|||++....++.++|||||
T Consensus       121 ~L~~LH---~~~iiH~dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~sl  197 (316)
T cd05108         121 GMNYLE---ERRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGADEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSY  197 (316)
T ss_pred             HHHHHH---hcCeeccccchhheEecCCCcEEEccccccccccCCCcceeccCCccceeecChHHhccCCCCchhhhHHH
Confidence            999999   89999999999999999999999999999987654433222222334667999999998899999999999


Q ss_pred             HHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCC
Q 044022          157 GAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPED  235 (241)
Q Consensus       157 G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~  235 (241)
                      |+++|++++ |..||....         ..+. ......+...  +.+   .        .++..+.+++.+||..||++
T Consensus       198 Gv~l~el~t~g~~p~~~~~---------~~~~-~~~~~~~~~~--~~~---~--------~~~~~~~~li~~cl~~~p~~  254 (316)
T cd05108         198 GVTVWELMTFGSKPYDGIP---------ASEI-SSILEKGERL--PQP---P--------ICTIDVYMIMVKCWMIDADS  254 (316)
T ss_pred             HHHHHHHHcCCCCCCCCCC---------HHHH-HHHHhCCCCC--CCC---C--------CCCHHHHHHHHHHccCChhh
Confidence            999999997 999985421         1111 1111111111  111   1        12246889999999999999


Q ss_pred             CCCCCC
Q 044022          236 RPTMVD  241 (241)
Q Consensus       236 Rpt~~e  241 (241)
                      |||+.|
T Consensus       255 Rps~~~  260 (316)
T cd05108         255 RPKFRE  260 (316)
T ss_pred             CcCHHH
Confidence            999853

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=100.00  E-value=4.4e-38  Score=253.09  Aligned_cols=227  Identities=19%  Similarity=0.212  Sum_probs=160.5

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-c---hHHHHHHHHHHHhchhhcCCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-L---PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-~---~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ...+.+.+|++++++++||||+++++++...+..++||||++++++..+..... .   ....++.|++.||.|||   +
T Consensus        42 ~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH---~  118 (287)
T cd07848          42 EVKETTLRELKMLRTLKQENIVELKEAFRRRGKLYLVFEYVEKNMLELLEEMPNGVPPEKVRSYIYQLIKAIHWCH---K  118 (287)
T ss_pred             cchhhHHHHHHHHHhCCCccccchhhhEecCCEEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            345678899999999999999999999999999999999999877765543321 1   45778999999999999   9


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhc
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      .+++|+||||+||+++.++.++|+|||.+......... ......+++.|+|||++.+..++.++|+||||+++|+|++|
T Consensus       119 ~~i~H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g  197 (287)
T cd07848         119 NDIVHRDIKPENLLISHNDVLKLCDFGFARNLSEGSNA-NYTEYVATRWYRSPELLLGAPYGKAVDMWSVGCILGELSDG  197 (287)
T ss_pred             CCeecCCCCHHHEEEcCCCcEEEeeccCcccccccccc-cccccccccccCCcHHHcCCCCCCchhHHhHHHHHHHHHhC
Confidence            99999999999999999999999999998765432211 11234688899999999888899999999999999999999


Q ss_pred             CcccccccccCC------CcccchHHHHHHHhhhcccCCCCCCccccCCC--chhHHHHHHHHHHHHHHhccCCCCCCCC
Q 044022          167 RIHIWDLLKDTH------DHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIP--CIEKEQQLHASAQLTLECVNNSPEDRPT  238 (241)
Q Consensus       167 ~~p~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~cl~~~p~~Rpt  238 (241)
                      ++||........      ..+....+................+.......  .......+..+.+|+.+||+.||++|||
T Consensus       198 ~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~~P~~R~s  277 (287)
T cd07848         198 QPLFPGESEIDQLFTIQKVLGPLPAEQMKLFYSNPRFHGLRFPAVNHPQSLERRYLGILSGVLLDLMKNLLKLNPTDRYL  277 (287)
T ss_pred             CCCCCCCCHHHHHHHHHHhhCCCCHHHHHhhhccchhcccccCcccCcccHHHhhhcccCHHHHHHHHHHccCCcccCCC
Confidence            999964211000      00000000111111111100000000000000  0001123467899999999999999999


Q ss_pred             CCC
Q 044022          239 MVD  241 (241)
Q Consensus       239 ~~e  241 (241)
                      ++|
T Consensus       278 ~~~  280 (287)
T cd07848         278 TEQ  280 (287)
T ss_pred             HHH
Confidence            864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=100.00  E-value=1.7e-38  Score=255.87  Aligned_cols=165  Identities=21%  Similarity=0.255  Sum_probs=135.7

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc-----hHHHHHHHHHH
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL-----PRLKIASDIVN   76 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-----~~~~~~~~i~~   76 (241)
                      |.+..+........+.+|++++++++||||+++++++..++..++||||+. ++|.+++.....     ....++.|++.
T Consensus        36 K~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~qi~~  114 (288)
T cd07871          36 KEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDIIHTERCLTLVFEYLD-SDLKQYLDNCGNLMSMHNVKIFMFQLLR  114 (288)
T ss_pred             EEecccccCCcchhHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEEeCCC-cCHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence            444333333445678899999999999999999999999889999999997 599988754321     45678999999


Q ss_pred             HhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc-cCCCcchhhHH
Q 044022           77 SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI-CVLNEKSNVFS  155 (241)
Q Consensus        77 ~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s  155 (241)
                      ||+|||   +++++||||||+|||++.++.+||+|||.+........  ......+++.|+|||.+.+ ..++.++||||
T Consensus       115 aL~~LH---~~~ivH~dlkp~Nil~~~~~~~kl~DfG~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~Diws  189 (288)
T cd07871         115 GLSYCH---KRKILHRDLKPQNLLINEKGELKLADFGLARAKSVPTK--TYSNEVVTLWYRPPDVLLGSTEYSTPIDMWG  189 (288)
T ss_pred             HHHHHH---hCCcccCCCCHHHEEECCCCCEEECcCcceeeccCCCc--cccCceecccccChHHhcCCcccCcHHHHHH
Confidence            999999   99999999999999999999999999999876433221  1123457889999998875 46889999999


Q ss_pred             HHHHHHHHHhcCccccc
Q 044022          156 FGAFLFELLAGRIHIWD  172 (241)
Q Consensus       156 ~G~~~~~~~~g~~p~~~  172 (241)
                      +|+++|+|++|+.||..
T Consensus       190 lG~~l~~l~~g~~pf~~  206 (288)
T cd07871         190 VGCILYEMATGRPMFPG  206 (288)
T ss_pred             HHHHHHHHHhCCCCCCC
Confidence            99999999999999954

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=100.00  E-value=2.8e-38  Score=259.00  Aligned_cols=199  Identities=18%  Similarity=0.225  Sum_probs=157.8

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      .....+.+|+++++.++||||+++++++...+..++||||+++|+|.+++.....    ....++.||+.||+|||   +
T Consensus        37 ~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH---~  113 (328)
T cd05593          37 DEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGGELFFHLSRERVFSEDRTRFYGAEIVSALDYLH---S  113 (328)
T ss_pred             hHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEEEeCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---h
Confidence            3456788999999999999999999999999999999999999999988865432    46778999999999999   9


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhc
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      ++++||||||+|||++.++.+||+|||++........  ......|++.|+|||++.+..++.++||||||+++|+|++|
T Consensus       114 ~~ivHrDikp~NIll~~~~~~kL~DfG~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG  191 (328)
T cd05593         114 GKIVYRDLKLENLMLDKDGHIKITDFGLCKEGITDAA--TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCG  191 (328)
T ss_pred             CCeEecccCHHHeEECCCCcEEEecCcCCccCCCccc--ccccccCCcCccChhhhcCCCCCccCCccccchHHHHHhhC
Confidence            9999999999999999999999999999865322211  11234689999999999988899999999999999999999


Q ss_pred             CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCC
Q 044022          167 RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT  238 (241)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt  238 (241)
                      +.||....         ..+.........       ..+..        ..+..+.+++.+||..||++||+
T Consensus       192 ~~Pf~~~~---------~~~~~~~~~~~~-------~~~p~--------~~~~~~~~li~~~L~~dP~~R~~  239 (328)
T cd05593         192 RLPFYNQD---------HEKLFELILMED-------IKFPR--------TLSADAKSLLSGLLIKDPNKRLG  239 (328)
T ss_pred             CCCCCCCC---------HHHHHHHhccCC-------ccCCC--------CCCHHHHHHHHHHcCCCHHHcCC
Confidence            99995421         111111111100       01111        12256889999999999999984

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.5e-38  Score=257.00  Aligned_cols=214  Identities=18%  Similarity=0.215  Sum_probs=158.0

Q ss_pred             HHHHHHHHHhcCCCcccceeeeeeeC--CcceEEEEecCCCCHHHhhcCC-----CchHHHHHHHHHHHhchhhcCCCCC
Q 044022           16 CINNITYAAQMSHNHILKRIGCCLQT--PIPILVFQSVEYGTLRDCIFGA-----PLPRLKIASDIVNSLAYLHFGFPRP   88 (241)
Q Consensus        16 ~~~e~~~l~~l~h~~iv~~~~~~~~~--~~~~lv~e~~~~~sL~~~l~~~-----~~~~~~~~~~i~~~l~~lh~~~~~~   88 (241)
                      ..+||.||++|.||||+++.+.....  +.+|||+|||++ +|.-++...     ..++..++.|++.||.|||   .++
T Consensus       163 ~~REI~ILr~l~HpNIikL~eivt~~~~~siYlVFeYMdh-DL~GLl~~p~vkft~~qIKc~mkQLl~Gl~~cH---~~g  238 (560)
T KOG0600|consen  163 AIREIKILRRLDHPNIIKLEEIVTSKLSGSIYLVFEYMDH-DLSGLLSSPGVKFTEPQIKCYMKQLLEGLEYCH---SRG  238 (560)
T ss_pred             HHHHHHHHHhcCCCcccceeeEEEecCCceEEEEEecccc-hhhhhhcCCCcccChHHHHHHHHHHHHHHHHHh---hcC
Confidence            45899999999999999999999876  689999999985 888887664     3367889999999999999   999


Q ss_pred             ceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc-CCCcchhhHHHHHHHHHHHhcC
Q 044022           89 IVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-VLNEKSNVFSFGAFLFELLAGR  167 (241)
Q Consensus        89 ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~~~~~~~g~  167 (241)
                      ++|||||.+|||+|.+|.+||+|||+++........ ..+..+-|..|+|||.+.+. .|+++.|+||.|||+.||++|+
T Consensus       239 vlHRDIK~SNiLidn~G~LKiaDFGLAr~y~~~~~~-~~T~rVvTLWYRpPELLLG~t~Yg~aVDlWS~GCIl~El~~gk  317 (560)
T KOG0600|consen  239 VLHRDIKGSNILIDNNGVLKIADFGLARFYTPSGSA-PYTSRVVTLWYRPPELLLGATSYGTAVDLWSVGCILAELFLGK  317 (560)
T ss_pred             eeeccccccceEEcCCCCEEeccccceeeccCCCCc-ccccceEEeeccChHHhcCCcccccceeehhhhHHHHHHHcCC
Confidence            999999999999999999999999999866554322 23445678899999999876 7999999999999999999999


Q ss_pred             cccccccccCCCcccchHHHHHHHhh--hcccCC---CCCCc-cccCCC--c-hh--HHHHHHHHHHHHHHhccCCCCCC
Q 044022          168 IHIWDLLKDTHDHGCFFNEYLKNYLE--DKRFTG---IPAPI-IVQDIP--C-IE--KEQQLHASAQLTLECVNNSPEDR  236 (241)
Q Consensus       168 ~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~-~~~~~~--~-~~--~~~~~~~~~~l~~~cl~~~p~~R  236 (241)
                      ++|.....-.      ..+....+..  ....+.   ++... +.+..+  . ..  ....+....+|+..+|..||++|
T Consensus       318 PI~~G~tEve------Ql~kIfklcGSP~e~~W~~~kLP~~~~~kp~~~y~r~l~E~~~~~~~~~l~Ll~~lL~ldP~kR  391 (560)
T KOG0600|consen  318 PILQGRTEVE------QLHKIFKLCGSPTEDYWPVSKLPHATIFKPQQPYKRRLRETFKDFPASALDLLEKLLSLDPDKR  391 (560)
T ss_pred             CCcCCccHHH------HHHHHHHHhCCCChhccccccCCcccccCCCCcccchHHHHhccCCHHHHHHHHHHhccCcccc
Confidence            9986521110      0000000000  011111   01000 000000  0 00  11233667899999999999999


Q ss_pred             CCCC
Q 044022          237 PTMV  240 (241)
Q Consensus       237 pt~~  240 (241)
                      .||.
T Consensus       392 ~tA~  395 (560)
T KOG0600|consen  392 GTAS  395 (560)
T ss_pred             ccHH
Confidence            9985

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-39  Score=276.35  Aligned_cols=215  Identities=23%  Similarity=0.360  Sum_probs=176.8

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc-----hHHHHHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL-----PRLKIASDIV   75 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-----~~~~~~~~i~   75 (241)
                      ||-+..-+.+.....|+.|+.||-|+.||||+++.|+....+...||+|||++|+|..||+.+..     +...+++.|+
T Consensus       662 IKTLK~GytekqrrdFL~EAsIMGQFdHPNIIrLEGVVTks~PvMIiTEyMENGsLDsFLR~~DGqftviQLVgMLrGIA  741 (996)
T KOG0196|consen  662 IKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIRLEGVVTKSKPVMIITEYMENGSLDSFLRQNDGQFTVIQLVGMLRGIA  741 (996)
T ss_pred             EeeeccCccHHHHhhhhhhhhhcccCCCCcEEEEEEEEecCceeEEEhhhhhCCcHHHHHhhcCCceEeehHHHHHHHHH
Confidence            45555556666788899999999999999999999999999999999999999999999987743     5678999999


Q ss_pred             HHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcc-eeecccccCCCccCcccccccCCCcchhhH
Q 044022           76 NSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH-ITTDRVIGTRGYSAPEYISICVLNEKSNVF  154 (241)
Q Consensus        76 ~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~-~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~  154 (241)
                      .|++||.   +++.|||||.++|||++.+..+|++|||+++.+.++... .+.....-+..|.|||.+...+++.+||||
T Consensus       742 sGMkYLs---dm~YVHRDLAARNILVNsnLvCKVsDFGLSRvledd~~~~ytt~GGKIPiRWTAPEAIa~RKFTsASDVW  818 (996)
T KOG0196|consen  742 SGMKYLS---DMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTLGGKIPIRWTAPEAIAYRKFTSASDVW  818 (996)
T ss_pred             HHhHHHh---hcCchhhhhhhhheeeccceEEEeccccceeecccCCCccccccCCccceeecChhHhhhcccCchhhcc
Confidence            9999999   999999999999999999999999999999987665411 111112235789999999999999999999


Q ss_pred             HHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCC
Q 044022          155 SFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSP  233 (241)
Q Consensus       155 s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p  233 (241)
                      |||+++||.++ |..||+++.+         .+.++.....-+   ++.+.           +++..+.+||..||++|-
T Consensus       819 SyGIVmWEVmSyGERPYWdmSN---------QdVIkaIe~gyR---LPpPm-----------DCP~aL~qLMldCWqkdR  875 (996)
T KOG0196|consen  819 SYGIVMWEVMSYGERPYWDMSN---------QDVIKAIEQGYR---LPPPM-----------DCPAALYQLMLDCWQKDR  875 (996)
T ss_pred             ccceEEEEecccCCCcccccch---------HHHHHHHHhccC---CCCCC-----------CCcHHHHHHHHHHHHHHh
Confidence            99999999776 9999987433         344444433222   22222           566889999999999999


Q ss_pred             CCCCCCCC
Q 044022          234 EDRPTMVD  241 (241)
Q Consensus       234 ~~Rpt~~e  241 (241)
                      ..||+++|
T Consensus       876 ~~RP~F~q  883 (996)
T KOG0196|consen  876 NRRPKFAQ  883 (996)
T ss_pred             hcCCCHHH
Confidence            99999854

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=3.8e-38  Score=250.67  Aligned_cols=200  Identities=20%  Similarity=0.245  Sum_probs=167.3

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      +..-.+.+||+||..|+||||+.++.+|++.+...+||||..+|.|++++.....    ....+++||+.|+.|+|   +
T Consensus        95 qDlvhIRREIeIMSsLNHPhII~IyEVFENkdKIvivMEYaS~GeLYDYiSer~~LsErEaRhfFRQIvSAVhYCH---k  171 (668)
T KOG0611|consen   95 QDLVHIRREIEIMSSLNHPHIIQIYEVFENKDKIVIVMEYASGGELYDYISERGSLSEREARHFFRQIVSAVHYCH---K  171 (668)
T ss_pred             HHHHHHHHHHHHHhhcCCCceeehhhhhcCCceEEEEEEecCCccHHHHHHHhccccHHHHHHHHHHHHHHHHHHh---h
Confidence            4455678999999999999999999999999999999999999999999976532    46789999999999999   9


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCC-cchhhHHHHHHHHHHHh
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLN-EKSNVFSFGAFLFELLA  165 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~-~~~Di~s~G~~~~~~~~  165 (241)
                      ++++|||||.+|||+|.++++||+|||++........   ..+.+|++-|.+||.+.+.+|. +.+|-||||+++|.++.
T Consensus       172 nrVvHRDLKLENILLD~N~NiKIADFGLSNly~~~kf---LqTFCGSPLYASPEIvNG~PY~GPEVDsWsLGvLLYtLVy  248 (668)
T KOG0611|consen  172 NRVVHRDLKLENILLDQNNNIKIADFGLSNLYADKKF---LQTFCGSPLYASPEIVNGTPYKGPEVDSWSLGVLLYTLVY  248 (668)
T ss_pred             ccceecccchhheeecCCCCeeeeccchhhhhccccH---HHHhcCCcccCCccccCCCCCCCCccchhhHHHHHHHHhh
Confidence            9999999999999999999999999999976655433   2456899999999999998874 88999999999999999


Q ss_pred             cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          166 GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       166 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      |.+||+.         ..+...++..........-                .+....-||+.||-.||++|.|++|
T Consensus       249 GtMPFDG---------~Dhk~lvrQIs~GaYrEP~----------------~PSdA~gLIRwmLmVNP~RRATieD  299 (668)
T KOG0611|consen  249 GTMPFDG---------RDHKRLVRQISRGAYREPE----------------TPSDASGLIRWMLMVNPERRATIED  299 (668)
T ss_pred             cccccCC---------chHHHHHHHhhcccccCCC----------------CCchHHHHHHHHHhcCcccchhHHH
Confidence            9999954         4455555555433322211                1134567999999999999999864

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=100.00  E-value=7.1e-38  Score=262.15  Aligned_cols=214  Identities=18%  Similarity=0.334  Sum_probs=162.5

Q ss_pred             cccccccccccHHHHHHHHHHHHhcC-CCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----------------
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMS-HNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----------------   64 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~-h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----------------   64 (241)
                      |.+.........+.+.+|+++++++. ||||++++++|...+..++||||+++|+|.+++....                
T Consensus        73 K~l~~~~~~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~  152 (400)
T cd05105          73 KMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKSGPIYIITEYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLD  152 (400)
T ss_pred             EecCCCCChHHHHHHHHHHHHHHhcCCCCCeeeEEEEEccCCceEEEEEecCCCcHHHHHHHhhhhhhcccccccccccc
Confidence            44444333344567999999999995 9999999999999999999999999999998874310                


Q ss_pred             --------------------------------------------------------------------------------
Q 044022           65 --------------------------------------------------------------------------------   64 (241)
Q Consensus        65 --------------------------------------------------------------------------------   64 (241)
                                                                                                      
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  232 (400)
T cd05105         153 IFGINPADESTRSYVILSFENKGDYMDMKQADTTQYVPMLEIKEASKYSDIQRSNYDRPASYKGSNDSEVKNLLSDDGSE  232 (400)
T ss_pred             ccCCCcccccccchhhhhhcccccccccccccccccchhhhhhhhhhhhhcccCcccccccccCcchhhHHHHHHhcccC
Confidence                                                                                            


Q ss_pred             -c---hHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcc
Q 044022           65 -L---PRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPE  140 (241)
Q Consensus        65 -~---~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE  140 (241)
                       .   ....++.|++.||.|||   +.+++|+||||+|||++.++.++|+|||++................++..|+|||
T Consensus       233 ~l~~~~~~~~~~qi~~aL~~LH---~~~ivH~dikp~Nill~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE  309 (400)
T cd05105         233 GLTTLDLLSFTYQVARGMEFLA---SKNCVHRDLAARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPE  309 (400)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChHhEEEeCCCEEEEEeCCcceeccccccccccCCcCCCcceEChh
Confidence             0   13568899999999999   8999999999999999999999999999987654433222223345677899999


Q ss_pred             cccccCCCcchhhHHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHH
Q 044022          141 YISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLH  219 (241)
Q Consensus       141 ~~~~~~~~~~~Di~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (241)
                      .+.+..++.++||||||+++|+|++ |..||......         .........+....     ...        ..+.
T Consensus       310 ~~~~~~~~~~~DiwSlGvil~ellt~g~~P~~~~~~~---------~~~~~~~~~~~~~~-----~~~--------~~~~  367 (400)
T cd05105         310 SIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMIVD---------STFYNKIKSGYRMA-----KPD--------HATQ  367 (400)
T ss_pred             hhcCCCCCchhhHHHHHHHHHHHHHCCCCCCcccchh---------HHHHHHHhcCCCCC-----CCc--------cCCH
Confidence            9988889999999999999999997 88998542111         11111111111100     011        2335


Q ss_pred             HHHHHHHHhccCCCCCCCCCC
Q 044022          220 ASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       220 ~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                      .+.+++.+||+.||++|||+.
T Consensus       368 ~l~~li~~cl~~dP~~RPt~~  388 (400)
T cd05105         368 EVYDIMVKCWNSEPEKRPSFL  388 (400)
T ss_pred             HHHHHHHHHCccCHhHCcCHH
Confidence            789999999999999999974

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.5e-38  Score=258.93  Aligned_cols=206  Identities=18%  Similarity=0.183  Sum_probs=161.1

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ....+.+|++++.+++||||+++++++...+..++||||+++++|.+++....    .....++.|++.||.|||   +.
T Consensus        44 ~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH---~~  120 (333)
T cd05600          44 EVRHVLTERDILTTTKSEWLVKLLYAFQDDEYLYLAMEYVPGGDFRTLLNNLGVLSEDHARFYMAEMFEAVDALH---EL  120 (333)
T ss_pred             HHHHHHHHHHHHHhCCCCCCccEEEEEEcCCEEEEEEeCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HC
Confidence            45678899999999999999999999999999999999999999999986542    246678999999999999   99


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcC
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR  167 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~  167 (241)
                      +++||||||+||+++.++.+||+|||++.....     ......|++.|+|||++.+..++.++||||||+++|+|++|.
T Consensus       121 ~ivH~dlkp~Nil~~~~~~~kL~Dfg~a~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~  195 (333)
T cd05600         121 GYIHRDLKPENFLIDASGHIKLTDFGLSKGIVT-----YANSVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGF  195 (333)
T ss_pred             CccccCCCHHHEEECCCCCEEEEeCcCCccccc-----ccCCcccCccccChhHhcCCCCCCccceecchHHHhhhhhCC
Confidence            999999999999999999999999999875543     123456899999999999889999999999999999999999


Q ss_pred             cccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          168 IHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       168 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      .||....         ..+..............  +.....     ....+..+.+++.+||..+|.+|||++|
T Consensus       196 ~pf~~~~---------~~~~~~~i~~~~~~~~~--~~~~~~-----~~~~s~~~~~li~~~l~~~~~rr~s~~~  253 (333)
T cd05600         196 PPFSGST---------PNETWENLKYWKETLQR--PVYDDP-----RFNLSDEAWDLITKLINDPSRRFGSLED  253 (333)
T ss_pred             CCCCCCC---------HHHHHHHHHhccccccC--CCCCcc-----ccccCHHHHHHHHHHhhChhhhcCCHHH
Confidence            9995421         11111111111100000  000000     0122357889999999999999999753

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=100.00  E-value=2.5e-37  Score=246.59  Aligned_cols=208  Identities=20%  Similarity=0.294  Sum_probs=155.3

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC---------chHHHHHHHHHHHhchhh
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP---------LPRLKIASDIVNSLAYLH   82 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~---------~~~~~~~~~i~~~l~~lh   82 (241)
                      ....+.+|+.++++++||||+++++++......++||||+++|+|.+++....         .....++.+++.|+.|||
T Consensus        38 ~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH  117 (269)
T cd05087          38 EQMKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEFCPLGDLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLH  117 (269)
T ss_pred             HHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCCcEEEEECCCCCcHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHH
Confidence            44578899999999999999999999998889999999999999999986421         124578899999999999


Q ss_pred             cCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc-------CCCcchhhHH
Q 044022           83 FGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-------VLNEKSNVFS  155 (241)
Q Consensus        83 ~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-------~~~~~~Di~s  155 (241)
                         +.+++|+||||+||+++.++.++++|||.+................++..|+|||++...       .++.++|+||
T Consensus       118 ---~~~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~Diws  194 (269)
T cd05087         118 ---KNNFIHSDLALRNCLLTADLTVKIGDYGLSHNKYKEDYYVTPDQLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWS  194 (269)
T ss_pred             ---HCCEeccccCcceEEEcCCCcEEECCccccccccCcceeecCCCcCCcccccCHhHhccccccccccCCCccchhHH
Confidence               899999999999999999999999999998654333222222334567889999988632       3578999999


Q ss_pred             HHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCC
Q 044022          156 FGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPE  234 (241)
Q Consensus       156 ~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~  234 (241)
                      ||+++|+|++ |..||......         +... ............+.+...        .++.+.+++.+|| .+|+
T Consensus       195 lG~~l~el~~~g~~p~~~~~~~---------~~~~-~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~c~-~~P~  255 (269)
T cd05087         195 LGVTIWELFELGSQPYRHLSDE---------QVLT-YTVREQQLKLPKPRLKLP--------LSDRWYEVMQFCW-LQPE  255 (269)
T ss_pred             HHHHHHHHHhCCCCCCCCCChH---------HHHH-HHhhcccCCCCCCccCCC--------CChHHHHHHHHHh-cCcc
Confidence            9999999996 99999542111         1111 111111111222221111        2246788999999 6899


Q ss_pred             CCCCCCC
Q 044022          235 DRPTMVD  241 (241)
Q Consensus       235 ~Rpt~~e  241 (241)
                      +|||++|
T Consensus       256 ~Rpt~~~  262 (269)
T cd05087         256 QRPSAEE  262 (269)
T ss_pred             cCCCHHH
Confidence            9999874

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-38  Score=263.78  Aligned_cols=208  Identities=23%  Similarity=0.331  Sum_probs=169.4

Q ss_pred             cccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc-----hHHHHHHHHHHHhch
Q 044022            6 HEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL-----PRLKIASDIVNSLAY   80 (241)
Q Consensus         6 ~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-----~~~~~~~~i~~~l~~   80 (241)
                      .+...+..+.|++|+-+|++++||||++++|+|.... .|+|||+++-|.|..+++.+..     ....++.||+.||+|
T Consensus       428 ~d~t~d~tekflqEa~iMrnfdHphIikLIGv~~e~P-~WivmEL~~~GELr~yLq~nk~sL~l~tL~ly~~Qi~talaY  506 (974)
T KOG4257|consen  428 TDCTPDDTEKFLQEASIMRNFDHPHIIKLIGVCVEQP-MWIVMELAPLGELREYLQQNKDSLPLRTLTLYCYQICTALAY  506 (974)
T ss_pred             cCCChhhHHHHHHHHHHHHhCCCcchhheeeeeeccc-eeEEEecccchhHHHHHHhccccchHHHHHHHHHHHHHHHHH
Confidence            3344456889999999999999999999999997665 7999999999999999987643     346789999999999


Q ss_pred             hhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHH
Q 044022           81 LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFL  160 (241)
Q Consensus        81 lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~  160 (241)
                      ||   +..+|||||.++|||+.....+|++|||+++.+........ +....+..|||||.+...+++.+||||.||+.+
T Consensus       507 Le---SkrfVHRDIAaRNiLVsSp~CVKLaDFGLSR~~ed~~yYka-S~~kLPIKWmaPESINfRrFTtASDVWMFgVCm  582 (974)
T KOG4257|consen  507 LE---SKRFVHRDIAARNILVSSPQCVKLADFGLSRYLEDDAYYKA-SRGKLPIKWMAPESINFRRFTTASDVWMFGVCM  582 (974)
T ss_pred             HH---hhchhhhhhhhhheeecCcceeeecccchhhhccccchhhc-cccccceeecCccccchhcccchhhHHHHHHHH
Confidence            99   99999999999999999999999999999998877654443 345678899999999999999999999999999


Q ss_pred             HHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCC
Q 044022          161 FELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM  239 (241)
Q Consensus       161 ~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~  239 (241)
                      ||++. |..||....+.+-          -...+++...+.+             +.+++.+..|+.+||++||.+||++
T Consensus       583 WEIl~lGvkPfqgvkNsDV----------I~~iEnGeRlP~P-------------~nCPp~LYslmskcWayeP~kRPrf  639 (974)
T KOG4257|consen  583 WEILSLGVKPFQGVKNSDV----------IGHIENGERLPCP-------------PNCPPALYSLMSKCWAYEPSKRPRF  639 (974)
T ss_pred             HHHHHhcCCccccccccce----------EEEecCCCCCCCC-------------CCCChHHHHHHHHHhccCcccCCcH
Confidence            99987 8899966433220          0111122222211             2455789999999999999999998


Q ss_pred             CC
Q 044022          240 VD  241 (241)
Q Consensus       240 ~e  241 (241)
                      .|
T Consensus       640 te  641 (974)
T KOG4257|consen  640 TE  641 (974)
T ss_pred             HH
Confidence            64

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=100.00  E-value=1.2e-37  Score=250.18  Aligned_cols=205  Identities=21%  Similarity=0.317  Sum_probs=159.0

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC---------------------chHHH
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP---------------------LPRLK   69 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~---------------------~~~~~   69 (241)
                      .....+.+|++++++++||||+++++++......|+||||+++++|.+++....                     ...+.
T Consensus        49 ~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (283)
T cd05090          49 QQWGEFQQEASLMAELHHPNIVCLLGVVTQEQPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLH  128 (283)
T ss_pred             HHHHHHHHHHHHHhhCCCCCeeeEEEEEecCCceEEEEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHH
Confidence            445678999999999999999999999999999999999999999999884211                     13467


Q ss_pred             HHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCc
Q 044022           70 IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNE  149 (241)
Q Consensus        70 ~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~  149 (241)
                      ++.+++.||.|||   +++++|+||||+||+++.++.++|+|||++................++..|+|||++.+..++.
T Consensus       129 i~~~i~~al~~lH---~~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  205 (283)
T cd05090         129 IAIQIAAGMEYLS---SHFFVHKDLAARNILIGEQLHVKISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAIMYGKFSS  205 (283)
T ss_pred             HHHHHHHHHHHHH---hcCeehhccccceEEEcCCCcEEeccccccccccCCcceecccCCCccceecChHHhccCCCCc
Confidence            8999999999999   8999999999999999999999999999987654332222223334567799999998888999


Q ss_pred             chhhHHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHh
Q 044022          150 KSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLEC  228 (241)
Q Consensus       150 ~~Di~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c  228 (241)
                      ++|+||||+++|+|++ |..||....         ..+....... .....     ...        ..+..+.+++.+|
T Consensus       206 ~~Dv~slG~il~el~~~g~~p~~~~~---------~~~~~~~~~~-~~~~~-----~~~--------~~~~~~~~li~~c  262 (283)
T cd05090         206 DSDIWSFGVVLWEIFSFGLQPYYGFS---------NQEVIEMVRK-RQLLP-----CSE--------DCPPRMYSLMTEC  262 (283)
T ss_pred             hhhhHHHHHHHHHHHcCCCCCCCCCC---------HHHHHHHHHc-CCcCC-----CCC--------CCCHHHHHHHHHH
Confidence            9999999999999998 988985411         1111111111 11111     111        1235788999999


Q ss_pred             ccCCCCCCCCCCC
Q 044022          229 VNNSPEDRPTMVD  241 (241)
Q Consensus       229 l~~~p~~Rpt~~e  241 (241)
                      |+.||++||++.+
T Consensus       263 l~~~p~~Rp~~~~  275 (283)
T cd05090         263 WQEGPSRRPRFKD  275 (283)
T ss_pred             cccCcccCcCHHH
Confidence            9999999999853

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=100.00  E-value=8.6e-38  Score=250.94  Aligned_cols=214  Identities=16%  Similarity=0.225  Sum_probs=162.6

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----------------
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----------------   64 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----------------   64 (241)
                      |.+.........+.+.+|+.++.+++||||+++++++......++++||+.+++|.+++....                 
T Consensus        41 K~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  120 (283)
T cd05091          41 KTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQPLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKST  120 (283)
T ss_pred             EEccCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCCceEEEEEcCCCCcHHHHHHhcCCCccccccccccccccc
Confidence            444433333345678899999999999999999999999899999999999999999974210                 


Q ss_pred             ---chHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccc
Q 044022           65 ---LPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEY  141 (241)
Q Consensus        65 ---~~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~  141 (241)
                         .....++.|++.||.|||   +++++||||||.||+++.++.+||+|||++................+++.|+|||+
T Consensus       121 ~~~~~~~~~~~ql~~aL~~lH---~~gi~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~  197 (283)
T cd05091         121 LEPADFVHIVTQIAAGMEFLS---SHHVVHKDLATRNVLVFDKLNVKISDLGLFREVYAADYYKLMGNSLLPIRWMSPEA  197 (283)
T ss_pred             cCHHHHHHHHHHHHHHHHHHH---HcCccccccchhheEecCCCceEecccccccccccchheeeccCccCCccccCHHH
Confidence               124678999999999999   99999999999999999999999999999876543322222233345678999999


Q ss_pred             ccccCCCcchhhHHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHH
Q 044022          142 ISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHA  220 (241)
Q Consensus       142 ~~~~~~~~~~Di~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (241)
                      +.+..++.++||||||+++|+|++ |..||....         ..+.... .........     ..        .++..
T Consensus       198 ~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~---------~~~~~~~-i~~~~~~~~-----~~--------~~~~~  254 (283)
T cd05091         198 IMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYS---------NQDVIEM-IRNRQVLPC-----PD--------DCPAW  254 (283)
T ss_pred             HhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCC---------HHHHHHH-HHcCCcCCC-----CC--------CCCHH
Confidence            988889999999999999999998 888875411         1111111 112211111     11        23356


Q ss_pred             HHHHHHHhccCCCCCCCCCCC
Q 044022          221 SAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       221 ~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +.+++.+||+.+|++|||++|
T Consensus       255 ~~~li~~cl~~~p~~RP~~~~  275 (283)
T cd05091         255 VYTLMLECWNEFPSRRPRFKD  275 (283)
T ss_pred             HHHHHHHHhCCCcccCCCHHH
Confidence            889999999999999999864

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=100.00  E-value=4.8e-38  Score=258.61  Aligned_cols=195  Identities=17%  Similarity=0.208  Sum_probs=157.3

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ...+.+.+|+++++.++||||+++++++...+..++||||+++|+|.+++.....    ....++.|++.||.|||   +
T Consensus        73 ~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv~Ey~~~g~L~~~i~~~~~~~~~~~~~~~~qi~~aL~~LH---~  149 (340)
T PTZ00426         73 KQVDHVFSERKILNYINHPFCVNLYGSFKDESYLYLVLEFVIGGEFFTFLRRNKRFPNDVGCFYAAQIVLIFEYLQ---S  149 (340)
T ss_pred             hhHHHHHHHHHHHHhCCCCCCcceEEEEEeCCEEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            3456788999999999999999999999999999999999999999999866432    45678999999999999   9


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhc
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      .+++||||||+|||++.++.++|+|||++.......     ....||+.|+|||++.+..++.++|+||||+++|+|++|
T Consensus       150 ~~ivHrDLkp~NILl~~~~~ikL~DFG~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~G  224 (340)
T PTZ00426        150 LNIVYRDLKPENLLLDKDGFIKMTDFGFAKVVDTRT-----YTLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVG  224 (340)
T ss_pred             CCeEccCCCHHHEEECCCCCEEEecCCCCeecCCCc-----ceecCChhhcCHHHHhCCCCCccccccchhhHHHHHhcC
Confidence            999999999999999999999999999987654321     234689999999999988899999999999999999999


Q ss_pred             CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCC
Q 044022          167 RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRP  237 (241)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rp  237 (241)
                      ..||.....         ........ .+..      .....        .+..+.+++.+||+.||++|+
T Consensus       225 ~~Pf~~~~~---------~~~~~~i~-~~~~------~~p~~--------~~~~~~~li~~~l~~dp~~R~  271 (340)
T PTZ00426        225 CPPFYANEP---------LLIYQKIL-EGII------YFPKF--------LDNNCKHLMKKLLSHDLTKRY  271 (340)
T ss_pred             CCCCCCCCH---------HHHHHHHh-cCCC------CCCCC--------CCHHHHHHHHHHcccCHHHcC
Confidence            999965211         11111111 1110      01111        124678999999999999996

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=100.00  E-value=6.7e-38  Score=256.23  Aligned_cols=198  Identities=17%  Similarity=0.227  Sum_probs=156.9

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ....+.+|++++++++||||+++++++...+..|+||||+++|+|..++....    .....++.|++.||.|||   ++
T Consensus        38 ~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH---~~  114 (323)
T cd05595          38 EVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLH---SR  114 (323)
T ss_pred             HHHHHHHHHHHHHhCCCCCCcceeeEEecCCEEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HC
Confidence            45567889999999999999999999999999999999999999998886542    246778999999999999   99


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcC
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR  167 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~  167 (241)
                      +++||||||+|||++.++.++|+|||++........  ......|++.|+|||++.+..++.++||||||+++|+|++|+
T Consensus       115 ~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~g~  192 (323)
T cd05595         115 DVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGA--TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGR  192 (323)
T ss_pred             CeEecCCCHHHEEEcCCCCEEecccHHhccccCCCC--ccccccCCcCcCCcccccCCCCCchhchhhhHHHHHHHHhCC
Confidence            999999999999999999999999998865322211  112346899999999999888999999999999999999999


Q ss_pred             cccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCC
Q 044022          168 IHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT  238 (241)
Q Consensus       168 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt  238 (241)
                      .||.....         .+.........       ..+..        ..++.+.+++.+||..||++||+
T Consensus       193 ~Pf~~~~~---------~~~~~~~~~~~-------~~~p~--------~~~~~~~~li~~~L~~dP~~R~~  239 (323)
T cd05595         193 LPFYNQDH---------ERLFELILMEE-------IRFPR--------TLSPEAKSLLAGLLKKDPKQRLG  239 (323)
T ss_pred             CCCCCCCH---------HHHHHHHhcCC-------CCCCC--------CCCHHHHHHHHHHccCCHHHhCC
Confidence            99954211         11111111111       01111        12256889999999999999984

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=100.00  E-value=1.4e-37  Score=234.60  Aligned_cols=212  Identities=19%  Similarity=0.194  Sum_probs=162.9

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc-----hHHHHHHHHHHHhchhhcCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL-----PRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-----~~~~~~~~i~~~l~~lh~~~   85 (241)
                      -.....++||+.|+.++|+||+.++++|...+...+|+||++ .+|+..++....     ....++.+++.|++|||   
T Consensus        43 Gi~~talREIK~Lqel~h~nIi~LiD~F~~~~~l~lVfEfm~-tdLe~vIkd~~i~l~pa~iK~y~~m~LkGl~y~H---  118 (318)
T KOG0659|consen   43 GINRTALREIKLLQELKHPNIIELIDVFPHKSNLSLVFEFMP-TDLEVVIKDKNIILSPADIKSYMLMTLKGLAYCH---  118 (318)
T ss_pred             CccHHHHHHHHHHHHccCcchhhhhhhccCCCceEEEEEecc-ccHHHHhcccccccCHHHHHHHHHHHHHHHHHHH---
Confidence            345678899999999999999999999999999999999997 799999988743     46789999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc-CCCcchhhHHHHHHHHHHH
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-VLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~~~~~~  164 (241)
                      .+.|+||||||.|+|++.+|.+||+|||+++...........  .+-|..|+|||.+.+. .|+...||||.|||+.|++
T Consensus       119 ~~~IlHRDlKPnNLLis~~g~lKiADFGLAr~f~~p~~~~~~--~V~TRWYRAPELLfGsr~Yg~~VDmWavGCI~AELl  196 (318)
T KOG0659|consen  119 SKWILHRDLKPNNLLISSDGQLKIADFGLARFFGSPNRIQTH--QVVTRWYRAPELLFGSRQYGTGVDMWAVGCIFAELL  196 (318)
T ss_pred             hhhhhcccCCccceEEcCCCcEEeecccchhccCCCCccccc--ceeeeeccChHHhccchhcCCcchhhhHHHHHHHHH
Confidence            999999999999999999999999999999988766544332  2568889999999876 6899999999999999999


Q ss_pred             hcCcccccccccCCCcccchHHHHH--HHhhhccc---------------CCCCCCccccCCCchhHHHHHHHHHHHHHH
Q 044022          165 AGRIHIWDLLKDTHDHGCFFNEYLK--NYLEDKRF---------------TGIPAPIIVQDIPCIEKEQQLHASAQLTLE  227 (241)
Q Consensus       165 ~g~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  227 (241)
                      -|.+-|....        .......  ........               .-.+.+.....+     ..++.+..+|+.+
T Consensus       197 lr~P~fpG~s--------DidQL~~If~~LGTP~~~~WP~~~~lpdY~~~~~~P~~~~~~lf-----~aas~d~ldLl~~  263 (318)
T KOG0659|consen  197 LRVPFFPGDS--------DIDQLSKIFRALGTPTPDQWPEMTSLPDYVKIQQFPKPPLNNLF-----PAASSDALDLLSK  263 (318)
T ss_pred             ccCCCCCCCc--------hHHHHHHHHHHcCCCCcccCccccccccHHHHhcCCCCcccccc-----ccccHHHHHHHHh
Confidence            8876553211        0111000  00111111               111111111111     1344667999999


Q ss_pred             hccCCCCCCCCCCC
Q 044022          228 CVNNSPEDRPTMVD  241 (241)
Q Consensus       228 cl~~~p~~Rpt~~e  241 (241)
                      ||.+||.+|+|+.|
T Consensus       264 m~~ynP~~Rita~q  277 (318)
T KOG0659|consen  264 MLTYNPKKRITASQ  277 (318)
T ss_pred             hhccCchhcccHHH
Confidence            99999999999864

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=100.00  E-value=2.4e-37  Score=247.98  Aligned_cols=206  Identities=20%  Similarity=0.263  Sum_probs=157.9

Q ss_pred             ccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc-----hHHHHHHHHHHHhchhhc
Q 044022            9 HRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL-----PRLKIASDIVNSLAYLHF   83 (241)
Q Consensus         9 ~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-----~~~~~~~~i~~~l~~lh~   83 (241)
                      .+....++..|+.++++++||||+++++++. ....++++||+++|+|.+++.....     ....++.|++.|+.||| 
T Consensus        49 ~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~-~~~~~~i~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH-  126 (279)
T cd05111          49 GRQTFQEITDHMLAMGSLDHAYIVRLLGICP-GASLQLVTQLSPLGSLLDHVRQHRDSLDPQRLLNWCVQIAKGMYYLE-  126 (279)
T ss_pred             chHHHHHHHHHHHHHhcCCCCCcceEEEEEC-CCccEEEEEeCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH-
Confidence            3344567888899999999999999999885 4457899999999999999865321     46789999999999999 


Q ss_pred             CCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHH
Q 044022           84 GFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL  163 (241)
Q Consensus        84 ~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~  163 (241)
                        +.+++|+||||+||+++.++.++|+|||.+............+...++..|+|||++.+..++.++||||||+++|++
T Consensus       127 --~~~iiH~dlkp~nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~el  204 (279)
T cd05111         127 --EHRMVHRNLAARNILLKSDSIVQIADFGVADLLYPDDKKYFYSEHKTPIKWMALESILFGRYTHQSDVWSYGVTVWEM  204 (279)
T ss_pred             --HCCEeccccCcceEEEcCCCcEEEcCCccceeccCCCcccccCCCCCcccccCHHHhccCCcCchhhHHHHHHHHHHH
Confidence              899999999999999999999999999999765443322222334567789999999888899999999999999999


Q ss_pred             Hh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          164 LA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       164 ~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ++ |..||....         ..+ .......+...  ..+.           .+...+.+++.+||..||++|||+.|
T Consensus       205 ~t~g~~p~~~~~---------~~~-~~~~~~~~~~~--~~~~-----------~~~~~~~~li~~c~~~~p~~Rps~~e  260 (279)
T cd05111         205 MSYGAEPYAGMR---------PHE-VPDLLEKGERL--AQPQ-----------ICTIDVYMVMVKCWMIDENVRPTFKE  260 (279)
T ss_pred             HcCCCCCCCCCC---------HHH-HHHHHHCCCcC--CCCC-----------CCCHHHHHHHHHHcCCCcccCcCHHH
Confidence            98 999985421         111 11111111111  1111           12246788999999999999999864

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=100.00  E-value=2.4e-37  Score=246.22  Aligned_cols=214  Identities=23%  Similarity=0.323  Sum_probs=164.4

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHH
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVN   76 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~   76 (241)
                      |.............|.+|+.++++++||||+++++++...+..+++|||+++++|.+++....     .....++.+++.
T Consensus        38 k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~  117 (266)
T cd05033          38 KTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSRPVMIITEYMENGSLDKFLRENDGKFTVGQLVGMLRGIAS  117 (266)
T ss_pred             EEcCCCCChHHHHHHHHHHHHHHhCCCCCcceEeEEEecCCceEEEEEcCCCCCHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence            444443444456678999999999999999999999999999999999999999999986532     146788999999


Q ss_pred             HhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHH
Q 044022           77 SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSF  156 (241)
Q Consensus        77 ~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~  156 (241)
                      |+.|||   +.+++|+||+|+||+++.++.++++|||.+................++..|+|||.+.+..++.++|+|||
T Consensus       118 ~l~~Lh---~~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Dv~sl  194 (266)
T cd05033         118 GMKYLS---EMNYVHRDLAARNILVNSNLVCKVSDFGLSRRLEDSEATYTTKGGKIPIRWTAPEAIAYRKFTSASDVWSF  194 (266)
T ss_pred             HHHHHH---hCCcccCCCCcceEEEcCCCCEEECccchhhcccccccceeccCCCCCccccChhhhccCCCccccchHHH
Confidence            999999   89999999999999999999999999999987652222111122334567999999998889999999999


Q ss_pred             HHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCC
Q 044022          157 GAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPED  235 (241)
Q Consensus       157 G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~  235 (241)
                      |+++|++++ |..||.....         .+..... .......  .   ..        ..+..+.+++.+||+.+|++
T Consensus       195 G~~l~~l~~~g~~p~~~~~~---------~~~~~~~-~~~~~~~--~---~~--------~~~~~l~~li~~cl~~~p~~  251 (266)
T cd05033         195 GIVMWEVMSYGERPYWDMSN---------QDVIKAV-EDGYRLP--P---PM--------DCPSALYQLMLDCWQKDRNE  251 (266)
T ss_pred             HHHHHHHHccCCCCCCCCCH---------HHHHHHH-HcCCCCC--C---CC--------CCCHHHHHHHHHHcCCCccc
Confidence            999999998 9999854211         1111111 1111100  0   01        22357889999999999999


Q ss_pred             CCCCCC
Q 044022          236 RPTMVD  241 (241)
Q Consensus       236 Rpt~~e  241 (241)
                      |||++|
T Consensus       252 Rp~~~e  257 (266)
T cd05033         252 RPTFSQ  257 (266)
T ss_pred             CcCHHH
Confidence            999864

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=100.00  E-value=2.5e-37  Score=249.93  Aligned_cols=212  Identities=18%  Similarity=0.306  Sum_probs=159.7

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc---------------hHHHHHHHHH
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL---------------PRLKIASDIV   75 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~---------------~~~~~~~~i~   75 (241)
                      ....+|.+|+++++.++|+||+++++++...+..++++||+++++|.+++.....               ....++.+++
T Consensus        61 ~~~~~~~~E~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  140 (296)
T cd05095          61 NARNDFLKEIKIMSRLKDPNIIRLLAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIA  140 (296)
T ss_pred             HHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHH
Confidence            3456899999999999999999999999999999999999999999999865421               3678899999


Q ss_pred             HHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHH
Q 044022           76 NSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFS  155 (241)
Q Consensus        76 ~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s  155 (241)
                      .|++|||   +.+++|+||||+||+++.++.++|+|||.+............+...++..|+|||......++.++|+||
T Consensus       141 ~al~~lH---~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~DiwS  217 (296)
T cd05095         141 SGMKYLS---SLNFVHRDLATRNCLVGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESILLGKFTTASDVWA  217 (296)
T ss_pred             HHHHHHH---HCCeecccCChheEEEcCCCCEEeccCcccccccCCcceeccCcCcCccccCCHHHHhcCCccchhhhhH
Confidence            9999999   8999999999999999999999999999987654332222222334467899999988888999999999


Q ss_pred             HHHHHHHHHh--cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCC
Q 044022          156 FGAFLFELLA--GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSP  233 (241)
Q Consensus       156 ~G~~~~~~~~--g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p  233 (241)
                      ||+++|+|++  |..||.......     ..................+.+   .        .++..+.+++.+||+.||
T Consensus       218 lG~~l~el~~~~~~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~---~--------~~~~~~~~li~~cl~~~p  281 (296)
T cd05095         218 FGVTLWEILTLCKEQPYSQLSDEQ-----VIENTGEFFRDQGRQVYLPKP---A--------LCPDSLYKLMLSCWRRNA  281 (296)
T ss_pred             HHHHHHHHHHhCCCCCccccChHH-----HHHHHHHHHhhccccccCCCC---C--------CCCHHHHHHHHHHcCCCc
Confidence            9999999998  678885422110     000000000000000000000   0        123578899999999999


Q ss_pred             CCCCCCCC
Q 044022          234 EDRPTMVD  241 (241)
Q Consensus       234 ~~Rpt~~e  241 (241)
                      ++|||+.|
T Consensus       282 ~~Rp~~~~  289 (296)
T cd05095         282 KERPSFQE  289 (296)
T ss_pred             ccCCCHHH
Confidence            99999864

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=100.00  E-value=1.7e-37  Score=248.86  Aligned_cols=218  Identities=21%  Similarity=0.253  Sum_probs=164.7

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCchHHHHHHHHHHHhchh
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDIVNSLAYL   81 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~i~~~l~~l   81 (241)
                      |....+......+++.+|++++++++||||+++++++...+..++|+||+++++|..+..........++.+++.|+.||
T Consensus        32 K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~qi~~~l~~l  111 (279)
T cd06619          32 KVIPLDITVELQKQIMSELEILYKCDSPYIIGFYGAFFVENRISICTEFMDGGSLDVYRKIPEHVLGRIAVAVVKGLTYL  111 (279)
T ss_pred             EEEecCCChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECCEEEEEEecCCCCChHHhhcCCHHHHHHHHHHHHHHHHHH
Confidence            44433333344567899999999999999999999999999999999999999997665433445678999999999999


Q ss_pred             hcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHH
Q 044022           82 HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLF  161 (241)
Q Consensus        82 h~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~  161 (241)
                      |   +.+++|+||||+||+++.++.++|+|||++.......    .....++..|+|||++.+..++.++|+||||+++|
T Consensus       112 H---~~~i~H~dlkp~Nill~~~~~~~l~dfg~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~  184 (279)
T cd06619         112 W---SLKILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNSI----AKTYVGTNAYMAPERISGEQYGIHSDVWSLGISFM  184 (279)
T ss_pred             H---HCCEeeCCCCHHHEEECCCCCEEEeeCCcceeccccc----ccCCCCChhhcCceeecCCCCCCcchHHHHHHHHH
Confidence            9   9999999999999999999999999999987654322    12346888999999999888999999999999999


Q ss_pred             HHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          162 ELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       162 ~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +|++|+.||.........  ....... ........     +....       ...++.+.+++.+||+.+|++||+++|
T Consensus       185 ~l~~g~~pf~~~~~~~~~--~~~~~~~-~~~~~~~~-----~~~~~-------~~~~~~~~~li~~~l~~~P~~Rp~~~e  249 (279)
T cd06619         185 ELALGRFPYPQIQKNQGS--LMPLQLL-QCIVDEDP-----PVLPV-------GQFSEKFVHFITQCMRKQPKERPAPEN  249 (279)
T ss_pred             HHHhCCCCchhhcccccc--cchHHHH-HHHhccCC-----CCCCC-------CcCCHHHHHHHHHHhhCChhhCCCHHH
Confidence            999999999652211100  0011111 11111110     01100       012356889999999999999999864

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=3e-37  Score=249.31  Aligned_cols=221  Identities=19%  Similarity=0.261  Sum_probs=162.4

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----------------c
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----------------L   65 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----------------~   65 (241)
                      |.+..+........|.+|++++++++|+|++++++++...+..++||||+++++|.+++....                .
T Consensus        50 K~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~  129 (295)
T cd05097          50 KMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLLGVCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIA  129 (295)
T ss_pred             EecCCCCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEcCCCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHH
Confidence            444443334455679999999999999999999999999999999999999999999885421                1


Q ss_pred             hHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc
Q 044022           66 PRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC  145 (241)
Q Consensus        66 ~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~  145 (241)
                      ..+.++.+++.|+.|||   +.+++|+||||+||+++.++.++|+|||.+................++..|+|||++...
T Consensus       130 ~~~~i~~~i~~al~~lH---~~~i~H~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  206 (295)
T cd05097         130 NLLYMAVQIASGMKYLA---SLNFVHRDLATRNCLVGNHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESILLG  206 (295)
T ss_pred             HHHHHHHHHHHHHHHHH---hcCeeccccChhhEEEcCCCcEEecccccccccccCcceeccCcCcCceeecChhhhccC
Confidence            35678999999999999   999999999999999999999999999998765433222222334456789999999888


Q ss_pred             CCCcchhhHHHHHHHHHHHh--cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHH
Q 044022          146 VLNEKSNVFSFGAFLFELLA--GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQ  223 (241)
Q Consensus       146 ~~~~~~Di~s~G~~~~~~~~--g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (241)
                      .++.++|+||||+++|+|++  |..||......     ....................   ...        ..+..+.+
T Consensus       207 ~~~~~~DvwSlG~~l~el~~~~~~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---~~~--------~~~~~l~~  270 (295)
T cd05097         207 KFTTASDVWAFGVTLWEMFTLCKEQPYSLLSDE-----QVIENTGEFFRNQGRQIYLS---QTP--------LCPSPVFK  270 (295)
T ss_pred             CcCchhhHHHHHHHHHHHHHcCCCCCCcccChH-----HHHHHHHHhhhhccccccCC---CCC--------CCCHHHHH
Confidence            89999999999999999998  56677542111     00000000000000000000   011        12257999


Q ss_pred             HHHHhccCCCCCCCCCCC
Q 044022          224 LTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       224 l~~~cl~~~p~~Rpt~~e  241 (241)
                      ++.+||+.||++|||+++
T Consensus       271 li~~~l~~~p~~RPs~~~  288 (295)
T cd05097         271 LMMRCWSRDIKDRPTFNK  288 (295)
T ss_pred             HHHHHcCCCchhCcCHHH
Confidence            999999999999999864

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.4e-37  Score=248.88  Aligned_cols=205  Identities=21%  Similarity=0.324  Sum_probs=160.3

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC--------------chHHHHHHHHHH
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP--------------LPRLKIASDIVN   76 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~--------------~~~~~~~~~i~~   76 (241)
                      .....+.+|+++++.++|+||+++++++......++|+||+++++|.+++....              ...+.++.+++.
T Consensus        51 ~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  130 (277)
T cd05032          51 RERIEFLNEASVMKEFNCHHVVRLLGVVSTGQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIAD  130 (277)
T ss_pred             HHHHHHHHHHHHHHhCCCCceeEEEEEEcCCCCcEEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHH
Confidence            345678899999999999999999999999999999999999999999986421              135678999999


Q ss_pred             HhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHH
Q 044022           77 SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSF  156 (241)
Q Consensus        77 ~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~  156 (241)
                      ||.|||   +.+++|+||||+||+++.++.++|+|||.+................++..|+|||.+....++.++|||||
T Consensus       131 ~l~~lH---~~~i~H~di~p~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~sl  207 (277)
T cd05032         131 GMAYLA---AKKFVHRDLAARNCMVAEDLTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTKSDVWSF  207 (277)
T ss_pred             HHHHHH---hCCccccccChheEEEcCCCCEEECCcccchhhccCcccccCCCCCccccccCHHHHhcCCCCcccchHHH
Confidence            999999   99999999999999999999999999999876543322222233346778999999988889999999999


Q ss_pred             HHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCC
Q 044022          157 GAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPED  235 (241)
Q Consensus       157 G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~  235 (241)
                      |+++|++++ |..||....         ..+..+... .+.....+.             ..+..+.+++.+||..+|++
T Consensus       208 G~il~el~t~g~~p~~~~~---------~~~~~~~~~-~~~~~~~~~-------------~~~~~~~~li~~~l~~~p~~  264 (277)
T cd05032         208 GVVLWEMATLAEQPYQGLS---------NEEVLKFVI-DGGHLDLPE-------------NCPDKLLELMRMCWQYNPKM  264 (277)
T ss_pred             HHHHHHhhccCCCCCccCC---------HHHHHHHHh-cCCCCCCCC-------------CCCHHHHHHHHHHcCCChhh
Confidence            999999998 888885411         111222221 111111111             11357889999999999999


Q ss_pred             CCCCCC
Q 044022          236 RPTMVD  241 (241)
Q Consensus       236 Rpt~~e  241 (241)
                      |||+.|
T Consensus       265 Rpt~~~  270 (277)
T cd05032         265 RPTFLE  270 (277)
T ss_pred             CCCHHH
Confidence            999864

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=100.00  E-value=2.9e-37  Score=244.75  Aligned_cols=213  Identities=20%  Similarity=0.284  Sum_probs=160.3

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC--C---chHHHHHHHHHH
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA--P---LPRLKIASDIVN   76 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~--~---~~~~~~~~~i~~   76 (241)
                      |+..........+.|.+|+.++++++|+||+++++++. .+..++|+||+++++|.+++...  .   ..++.++.+++.
T Consensus        28 k~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~  106 (257)
T cd05115          28 KVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIGVCE-AEALMLVMEMASGGPLNKFLSGKKDEITVSNVVELMHQVSM  106 (257)
T ss_pred             EEcccccChHHHHHHHHHHHHHHhcCCCCeEEEEEEEc-CCCeEEEEEeCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence            44444434445677999999999999999999999885 45689999999999999998642  2   246789999999


Q ss_pred             HhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCccee-ecccccCCCccCcccccccCCCcchhhHH
Q 044022           77 SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHIT-TDRVIGTRGYSAPEYISICVLNEKSNVFS  155 (241)
Q Consensus        77 ~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~-~~~~~~~~~~~aPE~~~~~~~~~~~Di~s  155 (241)
                      |+.|||   +++++|+||||+||+++.++.++|+|||.+........... .....++..|+|||.+....++.++||||
T Consensus       107 ~l~~lH---~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s  183 (257)
T cd05115         107 GMKYLE---GKNFVHRDLAARNVLLVNQHYAKISDFGLSKALGADDSYYKARSAGKWPLKWYAPECINFRKFSSRSDVWS  183 (257)
T ss_pred             HHHHHH---hcCeeecccchheEEEcCCCcEEeccCCccccccCCccceeccCCCCCCcccCCHHHHccCCCCchhhHHH
Confidence            999999   89999999999999999999999999999875433321111 11122356799999998888899999999


Q ss_pred             HHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCC
Q 044022          156 FGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPE  234 (241)
Q Consensus       156 ~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~  234 (241)
                      ||+++|++++ |..||.....         .+..... ..+....     ...        .+++++.+++.+||..||+
T Consensus       184 lG~~l~el~~~g~~p~~~~~~---------~~~~~~~-~~~~~~~-----~~~--------~~~~~l~~li~~c~~~~~~  240 (257)
T cd05115         184 YGITMWEAFSYGQKPYKKMKG---------PEVMSFI-EQGKRLD-----CPA--------ECPPEMYALMKDCWIYKWE  240 (257)
T ss_pred             HHHHHHHHhcCCCCCcCcCCH---------HHHHHHH-HCCCCCC-----CCC--------CCCHHHHHHHHHHcCCChh
Confidence            9999999996 9999965211         1111111 1111111     111        2236788999999999999


Q ss_pred             CCCCCCC
Q 044022          235 DRPTMVD  241 (241)
Q Consensus       235 ~Rpt~~e  241 (241)
                      +||++.+
T Consensus       241 ~Rp~~~~  247 (257)
T cd05115         241 DRPNFAK  247 (257)
T ss_pred             hCcCHHH
Confidence            9999753

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=3.4e-38  Score=257.44  Aligned_cols=201  Identities=22%  Similarity=0.229  Sum_probs=159.7

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ....+.+|++++++++||||+++++++...+..++||||+++|+|.+++.....    ....++.|++.||.|||   +.
T Consensus        41 ~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH---~~  117 (318)
T cd05582          41 DRVRTKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLH---SL  117 (318)
T ss_pred             hHHHHHHHHHHHHhCCCCCcccEEEEEEcCCEEEEEEcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HC
Confidence            345677899999999999999999999999999999999999999999865432    46788999999999999   99


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcC
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR  167 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~  167 (241)
                      +++||||||+||+++.++.++|+|||.+.........  .....|++.|+|||.+.+..++.++||||||+++|+|++|+
T Consensus       118 ~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~--~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~  195 (318)
T cd05582         118 GIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKK--AYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGS  195 (318)
T ss_pred             CEecCCCCHHHeEECCCCcEEEeeccCCcccCCCCCc--eecccCChhhcCHHHHcCCCCCCccceeccceEeeeeccCC
Confidence            9999999999999999999999999998754332111  12346889999999999888899999999999999999999


Q ss_pred             cccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          168 IHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       168 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      .||....         ..+.........  ..     +..        ..+..+.+++.+||+.||++|||+.+
T Consensus       196 ~p~~~~~---------~~~~~~~i~~~~--~~-----~p~--------~~~~~~~~li~~~l~~~P~~R~~a~~  245 (318)
T cd05582         196 LPFQGKD---------RKETMTMILKAK--LG-----MPQ--------FLSPEAQSLLRALFKRNPANRLGAGP  245 (318)
T ss_pred             CCCCCCC---------HHHHHHHHHcCC--CC-----CCC--------CCCHHHHHHHHHHhhcCHhHcCCCCC
Confidence            9995421         111111111111  00     111        12256889999999999999999753

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=100.00  E-value=2.7e-37  Score=252.79  Aligned_cols=200  Identities=20%  Similarity=0.213  Sum_probs=156.1

Q ss_pred             cHHHHHHHHHHH---HhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc---hHHHHHHHHHHHhchhhcCC
Q 044022           12 TYGSCINNITYA---AQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL---PRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        12 ~~~~~~~e~~~l---~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ..+.+.+|++++   +.++||||+++++++...+..|+||||+++++|...+.....   ....++.+++.||.|||   
T Consensus        42 ~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~~L~~~~~~~~l~~~~~~~~~~qi~~al~~lH---  118 (324)
T cd05589          42 EVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCFVMEYAAGGDLMMHIHTDVFSEPRAVFYAACVVLGLQYLH---  118 (324)
T ss_pred             HHHHHHHHHHHHHhccccCCCChhceeeEEEcCCEEEEEEcCCCCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            345677777665   456899999999999999999999999999999988876533   46789999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~  165 (241)
                      +.+++||||||+||+++.++.+||+|||++........  ......|++.|+|||.+.+..++.++||||||+++|+|++
T Consensus       119 ~~~ivHrdlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~--~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~  196 (324)
T cd05589         119 ENKIVYRDLKLDNLLLDTEGFVKIADFGLCKEGMGFGD--RTSTFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLV  196 (324)
T ss_pred             hCCeEecCCCHHHeEECCCCcEEeCcccCCccCCCCCC--cccccccCccccCHhHhcCCCCCcccchhhHHHHHHHHHh
Confidence            99999999999999999999999999998864322211  1234568999999999998889999999999999999999


Q ss_pred             cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          166 GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       166 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                      |+.||....         ..+..........       .....        .+..+.+++.+||..||++||++.
T Consensus       197 G~~pf~~~~---------~~~~~~~i~~~~~-------~~p~~--------~~~~~~~li~~~L~~dP~~R~~~~  247 (324)
T cd05589         197 GESPFPGDD---------EEEVFDSIVNDEV-------RYPRF--------LSREAISIMRRLLRRNPERRLGSG  247 (324)
T ss_pred             CCCCCCCCC---------HHHHHHHHHhCCC-------CCCCC--------CCHHHHHHHHHHhhcCHhHcCCCC
Confidence            999995421         1111222111110       01111        225678999999999999999753

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=100.00  E-value=2.2e-37  Score=251.05  Aligned_cols=165  Identities=19%  Similarity=0.213  Sum_probs=135.4

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHH
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVN   76 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~   76 (241)
                      |++...........+.+|+++++.++||||+++++++......++||||+. ++|.+++....     .....++.|++.
T Consensus        36 K~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~  114 (303)
T cd07869          36 KVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDIIHTKETLTLVFEYVH-TDLCQYMDKHPGGLHPENVKLFLFQLLR  114 (303)
T ss_pred             EEeccccccccchhHHHHHHHHhhCCCCCcCeEEEEEecCCeEEEEEECCC-cCHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence            444433333345567899999999999999999999999999999999996 68888775432     145678999999


Q ss_pred             HhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc-CCCcchhhHH
Q 044022           77 SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-VLNEKSNVFS  155 (241)
Q Consensus        77 ~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s  155 (241)
                      ||.|||   +.+++||||||+|||++.++.+||+|||.+........  ......+++.|+|||++.+. .++.++||||
T Consensus       115 al~~lH---~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~Diws  189 (303)
T cd07869         115 GLSYIH---QRYILHRDLKPQNLLISDTGELKLADFGLARAKSVPSH--TYSNEVVTLWYRPPDVLLGSTEYSTCLDMWG  189 (303)
T ss_pred             HHHHHH---HCCeecCCCCHHHEEECCCCCEEECCCCcceeccCCCc--cCCCCcccCCCCChHHHcCCCCCCcHHHHHH
Confidence            999999   99999999999999999999999999999875433221  11234678899999998654 5788999999


Q ss_pred             HHHHHHHHHhcCccccc
Q 044022          156 FGAFLFELLAGRIHIWD  172 (241)
Q Consensus       156 ~G~~~~~~~~g~~p~~~  172 (241)
                      +|+++|+|++|..||..
T Consensus       190 lG~il~~l~~g~~pf~~  206 (303)
T cd07869         190 VGCIFVEMIQGVAAFPG  206 (303)
T ss_pred             HHHHHHHHHhCCCCCCC
Confidence            99999999999999965

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=100.00  E-value=2.1e-37  Score=249.67  Aligned_cols=205  Identities=24%  Similarity=0.341  Sum_probs=159.5

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC--------------------------
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP--------------------------   64 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~--------------------------   64 (241)
                      ...+++.+|++++++++||||+++++.+...+..++++||+.+++|.+++....                          
T Consensus        45 ~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  124 (290)
T cd05045          45 SELRDLLSEFNLLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERAL  124 (290)
T ss_pred             HHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCCcEEEEEecCCCCHHHHHHhcCCccccccccccccccccccCcccccc
Confidence            345679999999999999999999999999999999999999999999875321                          


Q ss_pred             --chHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccc
Q 044022           65 --LPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYI  142 (241)
Q Consensus        65 --~~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~  142 (241)
                        ...+.++.+++.||.|||   +.+++||||||+||+++.++.++|+|||.+................++..|+|||.+
T Consensus       125 ~~~~~~~i~~~i~~~l~~LH---~~~ivH~dikp~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~  201 (290)
T cd05045         125 TMGDLISFAWQISRGMQYLA---EMKLVHRDLAARNVLVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESL  201 (290)
T ss_pred             CHHHHHHHHHHHHHHHHHHH---HCCeehhhhhhheEEEcCCCcEEeccccccccccCccchhcccCCCCCccccCHHHH
Confidence              134688999999999999   999999999999999999999999999998755433222222233456789999999


Q ss_pred             cccCCCcchhhHHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHH
Q 044022          143 SICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHAS  221 (241)
Q Consensus       143 ~~~~~~~~~Di~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (241)
                      .+..++.++||||||+++|+|++ |..||....          .+.............     ...        ..+..+
T Consensus       202 ~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~----------~~~~~~~~~~~~~~~-----~~~--------~~~~~~  258 (290)
T cd05045         202 FDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIA----------PERLFNLLKTGYRME-----RPE--------NCSEEM  258 (290)
T ss_pred             ccCCcchHhHHHHHHHHHHHHHhcCCCCCCCCC----------HHHHHHHHhCCCCCC-----CCC--------CCCHHH
Confidence            88889999999999999999998 999985421          111122221111000     011        223578


Q ss_pred             HHHHHHhccCCCCCCCCCCC
Q 044022          222 AQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       222 ~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      .+++.+||+.+|++|||+.|
T Consensus       259 ~~~i~~cl~~~P~~Rp~~~~  278 (290)
T cd05045         259 YNLMLTCWKQEPDKRPTFAD  278 (290)
T ss_pred             HHHHHHHccCCcccCCCHHH
Confidence            89999999999999999864

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=100.00  E-value=3.3e-37  Score=249.91  Aligned_cols=206  Identities=17%  Similarity=0.314  Sum_probs=160.5

Q ss_pred             ccHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC------chHHHHHHHHHHHhchhhc
Q 044022           11 HTYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP------LPRLKIASDIVNSLAYLHF   83 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~------~~~~~~~~~i~~~l~~lh~   83 (241)
                      ...+.+.+|+.+++++ +|+||+++++++...+..++++||+.+++|.+++....      .+...++.+++.||.||| 
T Consensus        80 ~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~lH-  158 (302)
T cd05055          80 SEREALMSELKIMSHLGNHENIVNLLGACTIGGPILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLA-  158 (302)
T ss_pred             HHHHHHHHHHHHHHhccCCCCcceEEEEEecCCceEEEEEcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH-
Confidence            3456789999999999 79999999999999999999999999999999986432      246788999999999999 


Q ss_pred             CCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHH
Q 044022           84 GFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL  163 (241)
Q Consensus        84 ~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~  163 (241)
                        +.+++|+||||+||+++.++.++++|||.+................++..|+|||.+.+..++.++||||||+++|++
T Consensus       159 --~~~ivH~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el  236 (302)
T cd05055         159 --SKNCIHRDLAARNVLLTHGKIVKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEI  236 (302)
T ss_pred             --HCCeehhhhccceEEEcCCCeEEECCCcccccccCCCceeecCCCCcccccCCHhhhccCCCCcHhHHHHHHHHHHHH
Confidence              899999999999999999999999999998765443322222233456789999999988899999999999999999


Q ss_pred             Hh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          164 LA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       164 ~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ++ |..||.....         .+........+....     ...        ..++.+.+++.+||+.+|++|||+.|
T Consensus       237 ~t~g~~p~~~~~~---------~~~~~~~~~~~~~~~-----~~~--------~~~~~~~~li~~cl~~~p~~Rpt~~e  293 (302)
T cd05055         237 FSLGSNPYPGMPV---------DSKFYKLIKEGYRMA-----QPE--------HAPAEIYDIMKTCWDADPLKRPTFKQ  293 (302)
T ss_pred             HhCCCCCcCCCCc---------hHHHHHHHHcCCcCC-----CCC--------CCCHHHHHHHHHHcCCCchhCcCHHH
Confidence            98 9999854211         111111111111000     001        11257899999999999999999864

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=1.5e-37  Score=254.13  Aligned_cols=197  Identities=19%  Similarity=0.210  Sum_probs=156.3

Q ss_pred             HHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCCCC
Q 044022           13 YGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFPRP   88 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~~~   88 (241)
                      ...+.+|++++++++||||+++++++..++..++||||+++++|.+++.....    ....++.|++.||.|||   +.+
T Consensus        44 ~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~  120 (323)
T cd05584          44 TAHTKAERNILEAVKHPFIVDLIYAFQTGGKLYLILEYLSGGELFMHLEREGIFMEDTACFYLSEISLALEHLH---QQG  120 (323)
T ss_pred             HHHHHHHHHHHHhCCCCchhceeeEEecCCeEEEEEeCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCC
Confidence            45677899999999999999999999999999999999999999999865432    35668889999999999   999


Q ss_pred             ceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcCc
Q 044022           89 IVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRI  168 (241)
Q Consensus        89 ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~~  168 (241)
                      ++||||||+|||++.++.++|+|||++........  ......|++.|+|||++.+..++.++||||||+++|+|++|+.
T Consensus       121 ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~  198 (323)
T cd05584         121 IIYRDLKPENILLDAQGHVKLTDFGLCKESIHEGT--VTHTFCGTIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGAP  198 (323)
T ss_pred             eecCCCCHHHeEECCCCCEEEeeCcCCeecccCCC--cccccCCCccccChhhccCCCCCCcceecccHHHHHHHhcCCC
Confidence            99999999999999999999999999865332221  1123468999999999998888999999999999999999999


Q ss_pred             ccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCC
Q 044022          169 HIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT  238 (241)
Q Consensus       169 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt  238 (241)
                      ||....         .......... +..      .+...        .+..+.+++.+||+.||++||+
T Consensus       199 pf~~~~---------~~~~~~~~~~-~~~------~~~~~--------~~~~~~~li~~~l~~~p~~R~~  244 (323)
T cd05584         199 PFTAEN---------RKKTIDKILK-GKL------NLPPY--------LTPEARDLLKKLLKRNPSSRLG  244 (323)
T ss_pred             CCCCCC---------HHHHHHHHHc-CCC------CCCCC--------CCHHHHHHHHHHcccCHhHcCC
Confidence            995421         1111111111 110      01111        1256889999999999999994

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=100.00  E-value=2.7e-37  Score=253.21  Aligned_cols=208  Identities=21%  Similarity=0.240  Sum_probs=158.4

Q ss_pred             cHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ....+.+|+.++.++ +||||+++++++...+..++||||+++|+|..++.....    ....++.+++.||.|||   +
T Consensus        38 ~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~~~~L~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH---~  114 (329)
T cd05618          38 DIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLH---E  114 (329)
T ss_pred             HHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            345677899998887 899999999999999999999999999999988755422    46778999999999999   9


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhc
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      ++++||||||+||+++.++.++|+|||++........  ......|++.|+|||++.+..++.++|+||||+++|+|++|
T Consensus       115 ~~ivH~Dikp~Nili~~~~~~kL~DfG~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g  192 (329)
T cd05618         115 RGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGD--TTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAG  192 (329)
T ss_pred             CCeeeCCCCHHHEEECCCCCEEEeeCCccccccCCCC--ccccccCCccccCHHHHcCCCCCCccceecccHHHHHHhhC
Confidence            9999999999999999999999999999865322111  11234689999999999988999999999999999999999


Q ss_pred             CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCC
Q 044022          167 RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM  239 (241)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~  239 (241)
                      +.||.......... ................ .     +..        ..+..+.+++.+||+.||++|||+
T Consensus       193 ~~Pf~~~~~~~~~~-~~~~~~~~~~i~~~~~-~-----~p~--------~~~~~~~~ll~~~L~~dP~~R~~~  250 (329)
T cd05618         193 RSPFDIVGSSDNPD-QNTEDYLFQVILEKQI-R-----IPR--------SLSVKAASVLKSFLNKDPKERLGC  250 (329)
T ss_pred             CCCCccCCCcCCcc-cccHHHHHHHHhcCCC-C-----CCC--------CCCHHHHHHHHHHhcCCHHHcCCC
Confidence            99996422111111 1111111111111110 1     111        122567899999999999999996

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=100.00  E-value=6.6e-37  Score=244.08  Aligned_cols=209  Identities=20%  Similarity=0.239  Sum_probs=155.1

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc--------hHHHHHHHHHHHhchhh
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL--------PRLKIASDIVNSLAYLH   82 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~--------~~~~~~~~i~~~l~~lh   82 (241)
                      ...+.|.+|+.+++.++||||+++++.|......++||||+++|+|.+++.....        ....++.+++.||.|||
T Consensus        37 ~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH  116 (268)
T cd05086          37 KEQNEFLQQGDPYRILQHPNILQCLGQCVEAIPYLLVFEYCELGDLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMH  116 (268)
T ss_pred             HHHHHHHHHHHHHhccCCcchhheEEEecCCCccEEEEecCCCCcHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHH
Confidence            3467899999999999999999999999999999999999999999999865311        24578899999999999


Q ss_pred             cCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc-------cCCCcchhhHH
Q 044022           83 FGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI-------CVLNEKSNVFS  155 (241)
Q Consensus        83 ~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-------~~~~~~~Di~s  155 (241)
                         +.+++|+||||+|||++.++.++|+|||.+................++..|+|||++..       ..++.++||||
T Consensus       117 ---~~~i~H~dikp~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~Diws  193 (268)
T cd05086         117 ---KHNFLHSDLALRNCFLTSDLTVKVGDYGIGPSRYKEDYIETEDDKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWA  193 (268)
T ss_pred             ---HCCeeccCCccceEEEcCCccEEecccccccccCcchhhhcccCCcCcccccCchhcccccCccccCCCCCcchhHH
Confidence               89999999999999999999999999998754322211112233467888999998753       24577899999


Q ss_pred             HHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCC
Q 044022          156 FGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPE  234 (241)
Q Consensus       156 ~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~  234 (241)
                      ||+++|+|++ |..||....         ..+......... .....++.+...        ....+.+++.+|| .+|+
T Consensus       194 lG~~l~el~~~~~~p~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~~~--------~~~~~~~l~~~c~-~~P~  254 (268)
T cd05086         194 LGVTLWELFENAAQPYSHLS---------DREVLNHVIKDQ-QVKLFKPQLELP--------YSERWYEVLQFCW-LSPE  254 (268)
T ss_pred             HHHHHHHHHhCCCCCCCCCC---------HHHHHHHHHhhc-ccccCCCccCCC--------CcHHHHHHHHHHh-hCcc
Confidence            9999999997 566774311         111122211111 112222222222        2256788999999 6899


Q ss_pred             CCCCCCC
Q 044022          235 DRPTMVD  241 (241)
Q Consensus       235 ~Rpt~~e  241 (241)
                      +|||++|
T Consensus       255 ~Rp~~~~  261 (268)
T cd05086         255 KRATAEE  261 (268)
T ss_pred             cCCCHHH
Confidence            9999864

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=100.00  E-value=3.2e-37  Score=252.82  Aligned_cols=208  Identities=19%  Similarity=0.220  Sum_probs=159.1

Q ss_pred             cHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ..+.+.+|..++.++ +||||+++++++...+..++||||+++|+|.+++....    ..+..++.|++.||.|||   +
T Consensus        38 ~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~~~~g~L~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH---~  114 (329)
T cd05588          38 DIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEFVSGGDLMFHMQRQRKLPEEHARFYSAEISLALNFLH---E  114 (329)
T ss_pred             HHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            345688899999998 79999999999999999999999999999998875442    246778999999999999   9


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhc
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      ++++||||||+||+++.++.++|+|||++........  ......|++.|+|||++.+..++.++|+||||+++|++++|
T Consensus       115 ~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~g  192 (329)
T cd05588         115 RGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIRPGD--TTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAG  192 (329)
T ss_pred             CCeEecCCCHHHeEECCCCCEEECcCccccccccCCC--ccccccCCccccCHHHHcCCCCCCccceechHHHHHHHHHC
Confidence            9999999999999999999999999999864322111  11234689999999999988899999999999999999999


Q ss_pred             CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCC
Q 044022          167 RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM  239 (241)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~  239 (241)
                      +.||........ ......+........... .     +...        .+..+.+++.+||..||.+|||+
T Consensus       193 ~~Pf~~~~~~~~-~~~~~~~~~~~~~~~~~~-~-----~p~~--------~~~~~~~li~~~L~~dP~~R~~~  250 (329)
T cd05588         193 RSPFDIVGMSDN-PDQNTEDYLFQVILEKQI-R-----IPRS--------LSVKASSVLKGFLNKDPKERLGC  250 (329)
T ss_pred             CCCccccccccc-ccccchHHHHHHHHcCCC-C-----CCCC--------CCHHHHHHHHHHhccCHHHcCCC
Confidence            999964221111 111111222221111111 1     1111        22568899999999999999985

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=100.00  E-value=3.2e-37  Score=251.50  Aligned_cols=200  Identities=21%  Similarity=0.268  Sum_probs=156.3

Q ss_pred             cHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ..+.+..|..++..+ +||||+++++++...+..++||||+++|+|.+++.....    ....++.|++.||.|||   +
T Consensus        38 ~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~~~~~~~~~~qi~~al~~LH---~  114 (316)
T cd05592          38 DVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVMEYLNGGDLMFHIQSSGRFDEARARFYAAEIICGLQFLH---K  114 (316)
T ss_pred             hHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            345566777777754 899999999999999999999999999999998865422    45678999999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhc
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      .+++||||||+||+++.++.++|+|||++........  ......|++.|+|||++.+..++.++||||||+++|+|++|
T Consensus       115 ~~ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~G  192 (316)
T cd05592         115 KGIIYRDLKLDNVLLDKDGHIKIADFGMCKENMNGEG--KASTFCGTPDYIAPEILKGQKYNESVDWWSFGVLLYEMLIG  192 (316)
T ss_pred             CCEEeCCCCHHHeEECCCCCEEEccCcCCeECCCCCC--ccccccCCccccCHHHHcCCCCCCcccchhHHHHHHHHHhC
Confidence            9999999999999999999999999999875433221  12335689999999999988899999999999999999999


Q ss_pred             CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          167 RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                      +.||....         ..+.........       +....        ..+..+.+++.+||+.||++||++.
T Consensus       193 ~~Pf~~~~---------~~~~~~~i~~~~-------~~~~~--------~~~~~~~~ll~~~l~~~P~~R~~~~  242 (316)
T cd05592         193 QSPFHGED---------EDELFDSILNDR-------PHFPR--------WISKEAKDCLSKLFERDPTKRLGVD  242 (316)
T ss_pred             CCCCCCCC---------HHHHHHHHHcCC-------CCCCC--------CCCHHHHHHHHHHccCCHHHcCCCh
Confidence            99996421         111111111110       01111        1225678999999999999999864

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=100.00  E-value=3.8e-37  Score=247.01  Aligned_cols=204  Identities=20%  Similarity=0.274  Sum_probs=158.0

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC--------CchHHHHHHHHHHHhchhhc
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA--------PLPRLKIASDIVNSLAYLHF   83 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~--------~~~~~~~~~~i~~~l~~lh~   83 (241)
                      ..+.+..|++++++++|+||+++.+++......++||||+++|+|.+.+...        ......++.|++.||.||| 
T Consensus        36 ~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH-  114 (280)
T cd05608          36 GYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIMNGGDLRYHIYNVDEENPGFPEPRACFYTAQIISGLEHLH-  114 (280)
T ss_pred             HHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEeCCCCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHH-
Confidence            3466788999999999999999999999999999999999999998876321        1245678999999999999 


Q ss_pred             CCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHH
Q 044022           84 GFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL  163 (241)
Q Consensus        84 ~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~  163 (241)
                        +.+++||||||+||+++.++.++|+|||.+.........  .....|++.|+|||++.+..++.++|+||||+++|+|
T Consensus       115 --~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~--~~~~~g~~~y~aPE~~~~~~~~~~~DvwslG~il~el  190 (280)
T cd05608         115 --QRRIIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQSK--TKGYAGTPGFMAPELLQGEEYDFSVDYFALGVTLYEM  190 (280)
T ss_pred             --HCCcccCCCCHHHEEECCCCCEEEeeCccceecCCCCcc--ccccCCCcCccCHHHhcCCCCCccccHHHHHHHHHHH
Confidence              999999999999999999999999999998765443221  1234688999999999998999999999999999999


Q ss_pred             HhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          164 LAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       164 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                      ++|+.||.......     ...+.....     ...  ......        ..+..+.+++.+||+.||++||+++
T Consensus       191 ~~g~~pf~~~~~~~-----~~~~~~~~~-----~~~--~~~~~~--------~~~~~~~~li~~~l~~~P~~R~~~~  247 (280)
T cd05608         191 IAARGPFRARGEKV-----ENKELKQRI-----LND--SVTYPD--------KFSPASKSFCEALLAKDPEKRLGFR  247 (280)
T ss_pred             HhCCCCCCCCCcch-----hHHHHHHhh-----ccc--CCCCcc--------cCCHHHHHHHHHHhcCCHHHhcCCC
Confidence            99999996421110     000111110     000  000111        2336788999999999999999654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=100.00  E-value=3.3e-37  Score=247.31  Aligned_cols=205  Identities=22%  Similarity=0.313  Sum_probs=159.9

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-------------------chHHHHH
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-------------------LPRLKIA   71 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-------------------~~~~~~~   71 (241)
                      ...+.+.+|+++++.++|+||+++++++...+..++++||+++++|.+++....                   ...+.++
T Consensus        49 ~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  128 (280)
T cd05092          49 SARQDFQREAELLTVLQHQHIVRFYGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIA  128 (280)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCceEEEEEecCCceEEEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHH
Confidence            345679999999999999999999999999999999999999999999986532                   1356788


Q ss_pred             HHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcch
Q 044022           72 SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKS  151 (241)
Q Consensus        72 ~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~  151 (241)
                      .+++.|++|||   +.+++|+||||+||+++.++.++|+|||.+................+++.|+|||++.+..++.++
T Consensus       129 ~qi~~al~~LH---~~~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~  205 (280)
T cd05092         129 SQIASGMVYLA---SLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTES  205 (280)
T ss_pred             HHHHHHHHHHH---HCCeecccccHhhEEEcCCCCEEECCCCceeEcCCCceeecCCCccccccccCHHHhccCCcCchh
Confidence            99999999999   999999999999999999999999999998755433222222233456789999999988899999


Q ss_pred             hhHHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhcc
Q 044022          152 NVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVN  230 (241)
Q Consensus       152 Di~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~  230 (241)
                      ||||||+++|+|++ |..||.....         .+...... .+.....+     .        ..+..+.+++.+||+
T Consensus       206 Di~slG~il~el~~~g~~p~~~~~~---------~~~~~~~~-~~~~~~~~-----~--------~~~~~~~~li~~cl~  262 (280)
T cd05092         206 DIWSFGVVLWEIFTYGKQPWYQLSN---------TEAIECIT-QGRELERP-----R--------TCPPEVYAIMQGCWQ  262 (280)
T ss_pred             hHHHHHHHHHHHHcCCCCCCccCCH---------HHHHHHHH-cCccCCCC-----C--------CCCHHHHHHHHHHcc
Confidence            99999999999998 8999855211         11111111 11110000     1        122568899999999


Q ss_pred             CCCCCCCCCCC
Q 044022          231 NSPEDRPTMVD  241 (241)
Q Consensus       231 ~~p~~Rpt~~e  241 (241)
                      .||.+|||++|
T Consensus       263 ~~P~~Rp~~~~  273 (280)
T cd05092         263 REPQQRMVIKD  273 (280)
T ss_pred             CChhhCCCHHH
Confidence            99999999864

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3e-37  Score=258.87  Aligned_cols=210  Identities=20%  Similarity=0.241  Sum_probs=169.9

Q ss_pred             Cccccccc--ccccHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc---hHHHHHHHH
Q 044022            1 MKFYGHEY--HRHTYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL---PRLKIASDI   74 (241)
Q Consensus         1 iK~~~~~~--~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~i   74 (241)
                      ||+..++.  .++..++.+.|.+|+... +||.+++++.+|+...++|.||||+.||++...++....   ....++..+
T Consensus       398 IK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~~l~fvmey~~Ggdm~~~~~~~~F~e~rarfyaAev  477 (694)
T KOG0694|consen  398 IKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTKEHLFFVMEYVAGGDLMHHIHTDVFSEPRARFYAAEV  477 (694)
T ss_pred             EEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccccccCCeEEEEEEecCCCcEEEEEecccccHHHHHHHHHHH
Confidence            45555443  557788899999999888 699999999999999999999999999997777765533   456789999


Q ss_pred             HHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhH
Q 044022           75 VNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVF  154 (241)
Q Consensus        75 ~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~  154 (241)
                      +.||.|||   +++|++||||.+|||+|.+|.+||+|||+++..-...  ...++.+||+.|+|||++.+..|+.++|.|
T Consensus       478 ~l~L~fLH---~~~IIYRDlKLdNiLLD~eGh~kiADFGlcKe~m~~g--~~TsTfCGTpey~aPEil~e~~Yt~aVDWW  552 (694)
T KOG0694|consen  478 VLGLQFLH---ENGIIYRDLKLDNLLLDTEGHVKIADFGLCKEGMGQG--DRTSTFCGTPEFLAPEVLTEQSYTRAVDWW  552 (694)
T ss_pred             HHHHHHHH---hcCceeeecchhheEEcccCcEEecccccccccCCCC--CccccccCChhhcChhhhccCcccchhhHH
Confidence            99999999   9999999999999999999999999999998654222  234678999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCC
Q 044022          155 SFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPE  234 (241)
Q Consensus       155 s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~  234 (241)
                      ||||++|||+.|..||..         +.-.+..........    ..|+           ..+.+..++++++|.+||+
T Consensus       553 ~lGVLlyeML~Gq~PF~g---------ddEee~FdsI~~d~~----~yP~-----------~ls~ea~~il~~ll~k~p~  608 (694)
T KOG0694|consen  553 GLGVLLYEMLVGESPFPG---------DDEEEVFDSIVNDEV----RYPR-----------FLSKEAIAIMRRLLRKNPE  608 (694)
T ss_pred             HHHHHHHHHHcCCCCCCC---------CCHHHHHHHHhcCCC----CCCC-----------cccHHHHHHHHHHhccCcc
Confidence            999999999999999953         122223333322221    1111           2336788999999999999


Q ss_pred             CCCCC
Q 044022          235 DRPTM  239 (241)
Q Consensus       235 ~Rpt~  239 (241)
                      +|..+
T Consensus       609 kRLG~  613 (694)
T KOG0694|consen  609 KRLGS  613 (694)
T ss_pred             cccCC
Confidence            99876

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=100.00  E-value=4.3e-37  Score=248.31  Aligned_cols=221  Identities=22%  Similarity=0.273  Sum_probs=164.4

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC------------c---h
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP------------L---P   66 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~------------~---~   66 (241)
                      |.+.........+++.+|++++++++||||+++++++...+..++++|++++++|.+++....            .   .
T Consensus        52 K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~  131 (296)
T cd05051          52 KVLRPDASDNAREDFLKEVKILSRLSDPNIARLLGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFST  131 (296)
T ss_pred             EEecCccCHHHHHHHHHHHHHHHhcCCCCEeEEEEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHH
Confidence            444433333456789999999999999999999999999999999999999999999986543            1   3


Q ss_pred             HHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccC
Q 044022           67 RLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICV  146 (241)
Q Consensus        67 ~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~  146 (241)
                      .+.++.+++.||+|||   +.+++|+||||+||+++.++.++|+|||.+................++..|+|||++.+..
T Consensus       132 ~~~~~~~i~~al~~LH---~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  208 (296)
T cd05051         132 LLYMATQIASGMRYLE---SLNFVHRDLATRNCLVGKNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVLLGK  208 (296)
T ss_pred             HHHHHHHHHHHHHHHH---HcCccccccchhceeecCCCceEEccccceeecccCcceeecCcCCCCceecCHHHhhcCC
Confidence            5788999999999999   8999999999999999999999999999987654333222223445677899999998888


Q ss_pred             CCcchhhHHHHHHHHHHHh--cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHH
Q 044022          147 LNEKSNVFSFGAFLFELLA--GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQL  224 (241)
Q Consensus       147 ~~~~~Di~s~G~~~~~~~~--g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  224 (241)
                      ++.++||||||+++|++++  |..||....         ..+.........   ...........+    ...+..+.++
T Consensus       209 ~~~~~Dv~slG~~l~el~~~~~~~p~~~~~---------~~~~~~~~~~~~---~~~~~~~~~~~~----~~~~~~l~~l  272 (296)
T cd05051         209 FTTKSDVWAFGVTLWEILTLCREQPYEHLT---------DQQVIENAGHFF---RDDGRQIYLPRP----PNCPKDIYEL  272 (296)
T ss_pred             CCccchhhhhHHHHHHHHhcCCCCCCCCcC---------hHHHHHHHHhcc---ccccccccCCCc----cCCCHHHHHH
Confidence            9999999999999999998  667774421         111111111100   000000000000    0223578999


Q ss_pred             HHHhccCCCCCCCCCCC
Q 044022          225 TLECVNNSPEDRPTMVD  241 (241)
Q Consensus       225 ~~~cl~~~p~~Rpt~~e  241 (241)
                      +.+||+.||++|||+.|
T Consensus       273 i~~cl~~~p~~Rpt~~e  289 (296)
T cd05051         273 MLECWRRDEEDRPTFRE  289 (296)
T ss_pred             HHHHhccChhcCCCHHH
Confidence            99999999999999864

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=100.00  E-value=8.6e-37  Score=244.57  Aligned_cols=204  Identities=20%  Similarity=0.276  Sum_probs=157.8

Q ss_pred             HHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC------chHHHHHHHHHHHhchhhcCCC
Q 044022           13 YGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP------LPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~------~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ...+..|++++++++||||+++.+++......++||||+++++|.+++....      .....++.|++.||.|||   +
T Consensus        37 ~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~~~lv~e~~~g~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~  113 (277)
T cd05607          37 EKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMSLMNGGDLKYHIYNVGERGLEMERVIHYSAQITCGILHLH---S  113 (277)
T ss_pred             hHHHHHHHHHHHhcCCCcEEEEEEEEecCCeEEEEEecCCCCCHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            4456679999999999999999999999999999999999999988875432      135678899999999999   9


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhc
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      .+++||||||+||+++.++.++|+|||.+........   .....++..|+|||++.+..++.++|+||+|+++|+|++|
T Consensus       114 ~~ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~el~~g  190 (277)
T cd05607         114 MDIVYRDMKPENVLLDDQGNCRLSDLGLAVELKDGKT---ITQRAGTNGYMAPEILKEEPYSYPVDWFAMGCSIYEMVAG  190 (277)
T ss_pred             CCEEEccCChHhEEEcCCCCEEEeeceeeeecCCCce---eeccCCCCCccCHHHHccCCCCCchhHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999876544321   1234678899999999888899999999999999999999


Q ss_pred             CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          167 RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +.||.......     ...+...... ...    .. ....        ..+..+.+++.+||+.||++|||+.|
T Consensus       191 ~~p~~~~~~~~-----~~~~~~~~~~-~~~----~~-~~~~--------~~~~~~~~li~~~L~~~P~~R~~~~~  246 (277)
T cd05607         191 RTPFKDHKEKV-----AKEELKRRTL-EDE----VK-FEHQ--------NFTEESKDICRLFLAKKPEDRLGSRE  246 (277)
T ss_pred             CCCCCCCcchh-----hHHHHHHHhh-ccc----cc-cccc--------cCCHHHHHHHHHHhccCHhhCCCCcc
Confidence            99986421110     0011111110 000    00 0000        22356899999999999999999853

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=100.00  E-value=1.9e-37  Score=250.09  Aligned_cols=214  Identities=21%  Similarity=0.317  Sum_probs=162.1

Q ss_pred             cccccccccccHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----------------
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----------------   64 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----------------   64 (241)
                      |............++.+|+++++++ +|+||+++++++...+..+++|||+++++|.+++....                
T Consensus        48 k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~  127 (293)
T cd05053          48 KMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQEGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEE  127 (293)
T ss_pred             EEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEcCCCCeEEEEEeCCCCcHHHHHHhcCCCcccccccccccccc
Confidence            3333333333456788999999999 89999999999999999999999999999999985321                


Q ss_pred             ----chHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcc
Q 044022           65 ----LPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPE  140 (241)
Q Consensus        65 ----~~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE  140 (241)
                          ...+.++.|++.||.|||   +.+++|+||||+||+++.++.++++|||.+................++..|+|||
T Consensus       128 ~l~~~~~~~i~~qi~~al~~LH---~~~ivH~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE  204 (293)
T cd05053         128 TLTQKDLVSFAYQVARGMEFLA---SKKCIHRDLAARNVLVTEDHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPE  204 (293)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHH---HCCccccccceeeEEEcCCCeEEeCccccccccccccceeccCCCCCCccccCHH
Confidence                135678999999999999   9999999999999999999999999999987654432222222233556799999


Q ss_pred             cccccCCCcchhhHHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHH
Q 044022          141 YISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLH  219 (241)
Q Consensus       141 ~~~~~~~~~~~Di~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (241)
                      ++.+..++.++||||||+++|++++ |..||....         ..+.... ...+.....     ..        ..+.
T Consensus       205 ~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~---------~~~~~~~-~~~~~~~~~-----~~--------~~~~  261 (293)
T cd05053         205 ALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIP---------VEELFKL-LKEGYRMEK-----PQ--------NCTQ  261 (293)
T ss_pred             HhccCCcCcccceeehhhHHHHHhcCCCCCCCCCC---------HHHHHHH-HHcCCcCCC-----CC--------CCCH
Confidence            9988889999999999999999997 888885421         1111111 111111111     11        1225


Q ss_pred             HHHHHHHHhccCCCCCCCCCCC
Q 044022          220 ASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       220 ~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      .+.+++.+||..||++|||+.|
T Consensus       262 ~~~~li~~~l~~~p~~Rps~~e  283 (293)
T cd05053         262 ELYHLMRDCWHEVPSQRPTFKQ  283 (293)
T ss_pred             HHHHHHHHHcccCcccCcCHHH
Confidence            7889999999999999999864

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=100.00  E-value=5e-37  Score=243.04  Aligned_cols=214  Identities=21%  Similarity=0.331  Sum_probs=163.7

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC------chHHHHHHHHH
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP------LPRLKIASDIV   75 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~------~~~~~~~~~i~   75 (241)
                      |....+......+++.+|++++++++||||+++++.+.. ...++|+||+++++|.+++....      .....++.+++
T Consensus        29 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~  107 (257)
T cd05040          29 KCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLYGVVLT-HPLMMVTELAPLGSLLDRLRKDALGHFLISTLCDYAVQIA  107 (257)
T ss_pred             eecCCcccHHHHHHHHHHHHHHhhcCCCCccceeEEEcC-CeEEEEEEecCCCcHHHHHHhcccccCcHHHHHHHHHHHH
Confidence            344333332456789999999999999999999999988 88999999999999999986643      14567889999


Q ss_pred             HHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcc-eeecccccCCCccCcccccccCCCcchhhH
Q 044022           76 NSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH-ITTDRVIGTRGYSAPEYISICVLNEKSNVF  154 (241)
Q Consensus        76 ~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~-~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~  154 (241)
                      .||.|||   +.+++|+||+|+||+++.++.++|+|||.+......... .......++..|+|||++.+..++.++|||
T Consensus       108 ~~L~~lH---~~~i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Di~  184 (257)
T cd05040         108 NGMRYLE---SKRFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVMEEHLKVPFAWCAPESLRTRTFSHASDVW  184 (257)
T ss_pred             HHHHHHH---hCCccccccCcccEEEecCCEEEeccccccccccccccceecccCCCCCceecCHHHhcccCcCchhhhH
Confidence            9999999   999999999999999999999999999998766442211 111233467789999999888899999999


Q ss_pred             HHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCC
Q 044022          155 SFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSP  233 (241)
Q Consensus       155 s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p  233 (241)
                      |||+++|+|++ |..||.....         .+.............     ...        ..+..+.+++.+||..+|
T Consensus       185 slG~~l~el~t~g~~p~~~~~~---------~~~~~~~~~~~~~~~-----~~~--------~~~~~~~~li~~~l~~~p  242 (257)
T cd05040         185 MFGVTLWEMFTYGEEPWAGLSG---------SQILKKIDKEGERLE-----RPE--------ACPQDIYNVMLQCWAHNP  242 (257)
T ss_pred             HHHHHHHHHHhCCCCCCCCCCH---------HHHHHHHHhcCCcCC-----CCc--------cCCHHHHHHHHHHCCCCc
Confidence            99999999998 9999854211         111222211111110     011        123578899999999999


Q ss_pred             CCCCCCCC
Q 044022          234 EDRPTMVD  241 (241)
Q Consensus       234 ~~Rpt~~e  241 (241)
                      ++|||+.|
T Consensus       243 ~~Rps~~~  250 (257)
T cd05040         243 ADRPTFAA  250 (257)
T ss_pred             ccCCCHHH
Confidence            99999864

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=4.6e-38  Score=253.92  Aligned_cols=205  Identities=24%  Similarity=0.356  Sum_probs=157.1

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeee--CCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQ--TPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~--~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ..+...+||.+|++|+|||||+++++..+  .+.+|||+|||..|.+...--..+    .+..+++++++.||.|||   
T Consensus       151 ~~ekv~~EIailKkl~H~nVV~LiEvLDDP~s~~~YlVley~s~G~v~w~p~d~~els~~~Ar~ylrDvv~GLEYLH---  227 (576)
T KOG0585|consen  151 PIEKVRREIAILKKLHHPNVVKLIEVLDDPESDKLYLVLEYCSKGEVKWCPPDKPELSEQQARKYLRDVVLGLEYLH---  227 (576)
T ss_pred             cHHHHHHHHHHHHhcCCcCeeEEEEeecCcccCceEEEEEeccCCccccCCCCcccccHHHHHHHHHHHHHHHHHHH---
Confidence            34688999999999999999999999875  458999999999888765443333    257889999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCC---cceeecccccCCCccCcccccccC----CCcchhhHHHHH
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGE---THITTDRVIGTRGYSAPEYISICV----LNEKSNVFSFGA  158 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~---~~~~~~~~~~~~~~~aPE~~~~~~----~~~~~Di~s~G~  158 (241)
                      .++|+||||||+|+|++.+|++||+|||.+.....+.   ........+||+.|+|||.+.++.    .+.+.||||+|+
T Consensus       228 ~QgiiHRDIKPsNLLl~~~g~VKIsDFGVs~~~~~~~~~~~d~~L~~tvGTPAF~APE~c~~~~~~~~~g~a~DiWalGV  307 (576)
T KOG0585|consen  228 YQGIIHRDIKPSNLLLSSDGTVKISDFGVSNEFPQGSDEGSDDQLSRTVGTPAFFAPELCSGGNSFSYSGFALDIWALGV  307 (576)
T ss_pred             hcCeeccccchhheEEcCCCcEEeeccceeeecccCCccccHHHHhhcCCCccccchHhhcCCCCccccchhhhhhhhhh
Confidence            9999999999999999999999999999997663221   111122368999999999998732    346889999999


Q ss_pred             HHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCC
Q 044022          159 FLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT  238 (241)
Q Consensus       159 ~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt  238 (241)
                      ++|-++.|+.||.+         ....+.........        ...+..+     +..+.+++||.++|.+||++|.|
T Consensus       308 TLYCllfG~~PF~~---------~~~~~l~~KIvn~p--------L~fP~~p-----e~~e~~kDli~~lL~KdP~~Ri~  365 (576)
T KOG0585|consen  308 TLYCLLFGQLPFFD---------DFELELFDKIVNDP--------LEFPENP-----EINEDLKDLIKRLLEKDPEQRIT  365 (576)
T ss_pred             hHHHhhhccCCccc---------chHHHHHHHHhcCc--------ccCCCcc-----cccHHHHHHHHHHhhcChhheee
Confidence            99999999999965         11122222211111        1111111     34478899999999999999999


Q ss_pred             CCC
Q 044022          239 MVD  241 (241)
Q Consensus       239 ~~e  241 (241)
                      +.|
T Consensus       366 l~~  368 (576)
T KOG0585|consen  366 LPD  368 (576)
T ss_pred             hhh
Confidence            754

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=100.00  E-value=4.2e-37  Score=251.21  Aligned_cols=200  Identities=19%  Similarity=0.250  Sum_probs=157.9

Q ss_pred             ccHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCC
Q 044022           11 HTYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~   85 (241)
                      .....+.+|..++..+ +||||+++++++...+..++||||+++|+|.+++.....    ....++.|++.||.|||   
T Consensus        37 ~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey~~~g~L~~~i~~~~~l~~~~~~~~~~ql~~~L~~lH---  113 (320)
T cd05590          37 DDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVMEFVNGGDLMFHIQKSRRFDEARARFYAAEITSALMFLH---  113 (320)
T ss_pred             cHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEcCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            3456677899998877 799999999999999999999999999999988865422    46678999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~  165 (241)
                      +++++||||||+|||++.++.++|+|||++........  ......|++.|+|||++.+..++.++||||||+++|+|++
T Consensus       114 ~~~ivH~dlkp~NIli~~~~~~kL~DfG~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~  191 (320)
T cd05590         114 DKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFNGK--TTSTFCGTPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLC  191 (320)
T ss_pred             HCCeEeCCCCHHHeEECCCCcEEEeeCCCCeecCcCCC--cccccccCccccCHHHHcCCCCCCccchhhhHHHHHHHhh
Confidence            99999999999999999999999999999875432211  1133468999999999998889999999999999999999


Q ss_pred             cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCC
Q 044022          166 GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM  239 (241)
Q Consensus       166 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~  239 (241)
                      |+.||....         ..+.........    ..   ...        ..+..+.+++.+||+.||++||++
T Consensus       192 g~~Pf~~~~---------~~~~~~~i~~~~----~~---~~~--------~~~~~~~~li~~~L~~dP~~R~~~  241 (320)
T cd05590         192 GHAPFEAEN---------EDDLFEAILNDE----VV---YPT--------WLSQDAVDILKAFMTKNPTMRLGS  241 (320)
T ss_pred             CCCCCCCCC---------HHHHHHHHhcCC----CC---CCC--------CCCHHHHHHHHHHcccCHHHCCCC
Confidence            999996421         111111111111    00   011        122568899999999999999997

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=3.7e-37  Score=247.29  Aligned_cols=217  Identities=24%  Similarity=0.309  Sum_probs=158.3

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeC--CcceEEEEecCCCCHHHhhcCCCc---hHHHHHHHHHHHhchhhcCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQT--PIPILVFQSVEYGTLRDCIFGAPL---PRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~--~~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~i~~~l~~lh~~~   85 (241)
                      .....|.+|++++++++||||+++++++...  ...+++|||+++++|.+++.....   .+..++.+++.||.|||   
T Consensus        48 ~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~l~~lH---  124 (283)
T cd05080          48 QNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQLIMEYVPLGSLRDYLPKHKLNLAQLLLFAQQICEGMAYLH---  124 (283)
T ss_pred             HHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCceEEEEecCCCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH---
Confidence            3466788999999999999999999988754  357899999999999999876533   56789999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcce-eecccccCCCccCcccccccCCCcchhhHHHHHHHHHHH
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHI-TTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~-~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~  164 (241)
                      +.+++|+||||+||+++.++.++|+|||.+.......... ......++..|+|||.+....++.++||||||+++|+|+
T Consensus       125 ~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~~l~el~  204 (283)
T cd05080         125 SQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELL  204 (283)
T ss_pred             HCCeeccccChheEEEcCCCcEEEeecccccccCCcchhhccCCCCCCCceeeCHhHhcccCCCcccccHHHHHHHHHHH
Confidence            8999999999999999999999999999987654332111 111223556799999998888999999999999999999


Q ss_pred             hcCcccccccccCCCcccchHHHHHHHhh---hcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          165 AGRIHIWDLLKDTHDHGCFFNEYLKNYLE---DKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       165 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +|..|+.......       .+.......   ................+    ...+..+.+++.+||+.+|++|||+++
T Consensus       205 tg~~p~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~li~~cl~~~p~~Rps~~~  273 (283)
T cd05080         205 THCDSKQSPPKKF-------EEMIGPKQGQMTVVRLIELLERGMRLPCP----KNCPQEVYILMKNCWETEAKFRPTFRS  273 (283)
T ss_pred             hCCCCCCCCcchh-------hhhhcccccccchhhhhhhhhcCCCCCCC----CCCCHHHHHHHHHHhccChhhCCCHHH
Confidence            9999985422110       000000000   00000000000000000    123367899999999999999999864

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=100.00  E-value=3.9e-37  Score=252.99  Aligned_cols=215  Identities=21%  Similarity=0.350  Sum_probs=161.4

Q ss_pred             cccccccccccHHHHHHHHHHHHhc-CCCcccceeeeeeeC-CcceEEEEecCCCCHHHhhcCCC---------------
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQM-SHNHILKRIGCCLQT-PIPILVFQSVEYGTLRDCIFGAP---------------   64 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~-~~~~lv~e~~~~~sL~~~l~~~~---------------   64 (241)
                      |.+.........+.+.+|++++.++ +|+||++++++|... ...++++||+++++|.+++....               
T Consensus        43 K~~~~~~~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~~~~~~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~  122 (337)
T cd05054          43 KMLKEGATASEYKALMTELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKRE  122 (337)
T ss_pred             eeccCCCCHHHHHHHHHHHHHHHhhccCcchhheeeeEecCCCCEEEEEecCCCCCHHHHHHhccccccccccccccccc
Confidence            4444333334456788999999999 899999999988754 56789999999999999875311               


Q ss_pred             --------------------------------------------------chHHHHHHHHHHHhchhhcCCCCCceeccC
Q 044022           65 --------------------------------------------------LPRLKIASDIVNSLAYLHFGFPRPIVLRNF   94 (241)
Q Consensus        65 --------------------------------------------------~~~~~~~~~i~~~l~~lh~~~~~~ivh~dl   94 (241)
                                                                        .....++.+++.||.|||   +.+++||||
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH---~~~ivHrDi  199 (337)
T cd05054         123 MKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEEGDELYKEPLTLEDLISYSFQVARGMEFLA---SRKCIHRDL  199 (337)
T ss_pred             cccccccccccccCCccccccccccccCcchhhcccchhhhHHhhcCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCC
Confidence                                                              024678899999999999   999999999


Q ss_pred             CCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh-cCcccccc
Q 044022           95 KTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDL  173 (241)
Q Consensus        95 ~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~-g~~p~~~~  173 (241)
                      ||+||+++.++.++|+|||++............+...++..|+|||++.+..++.++|||||||++|++++ |..||...
T Consensus       200 kp~Nill~~~~~vkL~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~SlGv~l~el~t~g~~p~~~~  279 (337)
T cd05054         200 AARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGV  279 (337)
T ss_pred             CcceEEEeCCCcEEEeccccchhcccCcchhhccCCCCCccccCcHHhcCCCCCccccHHHHHHHHHHHHHcCCCCCCCC
Confidence            99999999999999999999976544332223334456678999999999999999999999999999998 99998541


Q ss_pred             cccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          174 LKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ..         .+........+.....     ..        ..+..+.+++.+||+.+|++|||++|
T Consensus       280 ~~---------~~~~~~~~~~~~~~~~-----~~--------~~~~~~~~l~~~cl~~~p~~RPs~~e  325 (337)
T cd05054         280 QI---------DEEFCRRLKEGTRMRA-----PE--------YATPEIYSIMLDCWHNNPEDRPTFSE  325 (337)
T ss_pred             Cc---------cHHHHHHHhccCCCCC-----Cc--------cCCHHHHHHHHHHccCChhhCcCHHH
Confidence            11         0111111111111100     01        22357899999999999999999864

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=100.00  E-value=1.3e-36  Score=240.76  Aligned_cols=203  Identities=20%  Similarity=0.314  Sum_probs=158.7

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ....|.+|+++++.++||||+++++++...+..++||||+++|+|.+++....     .....++.+++.||.|||   +
T Consensus        42 ~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~  118 (256)
T cd05114          42 SEEDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIVTEFMENGCLLNYLRQRQGKLSKDMLLSMCQDVCEGMEYLE---R  118 (256)
T ss_pred             cHHHHHHHHHHHHHCCCCCceeEEEEEccCCCEEEEEEcCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            45678999999999999999999999999999999999999999999886432     146788999999999999   9


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh-
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA-  165 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~-  165 (241)
                      .+++|+||+|+||+++.++.++++|||.+.......... .....++..|+|||.+.+..++.++|+||||+++|++++ 
T Consensus       119 ~~i~H~dl~p~ni~i~~~~~~kl~d~g~~~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~s~G~~l~el~~~  197 (256)
T cd05114         119 NSFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEYTS-SSGAKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTE  197 (256)
T ss_pred             CCccccccCcceEEEcCCCeEEECCCCCccccCCCceec-cCCCCCchhhCChhhcccCccchhhhhHHHHHHHHHHHcC
Confidence            999999999999999999999999999887553322211 112234567999999988889999999999999999999 


Q ss_pred             cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          166 GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       166 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      |+.||....         ..+......... .  ...+.           ..+..+.+++.+||..+|++|||++|
T Consensus       198 g~~p~~~~~---------~~~~~~~i~~~~-~--~~~~~-----------~~~~~~~~li~~c~~~~p~~Rps~~~  250 (256)
T cd05114         198 GKMPFEKKS---------NYEVVEMISRGF-R--LYRPK-----------LASMTVYEVMYSCWHEKPEGRPTFAE  250 (256)
T ss_pred             CCCCCCCCC---------HHHHHHHHHCCC-C--CCCCC-----------CCCHHHHHHHHHHccCCcccCcCHHH
Confidence            899985421         112222221111 0  01111           12256899999999999999999864

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>PHA03212 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=7.3e-37  Score=255.70  Aligned_cols=155  Identities=19%  Similarity=0.237  Sum_probs=132.2

Q ss_pred             HHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCCCC
Q 044022           13 YGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFPRP   88 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~~~   88 (241)
                      .+.+.+|++++++|+||||+++++++......++|+|++. ++|..++....    ...+.++.|++.||.|||   +++
T Consensus       127 ~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~l~~~~~~~i~~qi~~aL~ylH---~~~  202 (391)
T PHA03212        127 RGGTATEAHILRAINHPSIIQLKGTFTYNKFTCLILPRYK-TDLYCYLAAKRNIAICDILAIERSVLRAIQYLH---ENR  202 (391)
T ss_pred             hhhhHHHHHHHHhCCCCCCCCEeEEEEECCeeEEEEecCC-CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCC
Confidence            3457899999999999999999999999999999999995 78888875432    146788999999999999   899


Q ss_pred             ceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcCc
Q 044022           89 IVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRI  168 (241)
Q Consensus        89 ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~~  168 (241)
                      |+||||||+|||++.++.++|+|||++........ .......||+.|+|||++.+..++.++||||||+++|+|++|+.
T Consensus       203 IvHrDiKP~NIll~~~~~vkL~DFG~a~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~  281 (391)
T PHA03212        203 IIHRDIKAENIFINHPGDVCLGDFGAACFPVDINA-NKYYGWAGTIATNAPELLARDPYGPAVDIWSAGIVLFEMATCHD  281 (391)
T ss_pred             cccCCCChHhEEEcCCCCEEEEeCCcccccccccc-cccccccCccCCCChhhhcCCCCCcHHHHHHHHHHHHHHHHCCC
Confidence            99999999999999999999999999864322111 11123468999999999998889999999999999999999998


Q ss_pred             cccc
Q 044022          169 HIWD  172 (241)
Q Consensus       169 p~~~  172 (241)
                      ||..
T Consensus       282 p~~~  285 (391)
T PHA03212        282 SLFE  285 (391)
T ss_pred             CcCC
Confidence            8754

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=100.00  E-value=1.4e-36  Score=246.46  Aligned_cols=214  Identities=19%  Similarity=0.288  Sum_probs=163.5

Q ss_pred             cccccccccccHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----------------
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----------------   64 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----------------   64 (241)
                      |.+..+......+++.+|+.+++.+ +||||+++++++...+..+++|||+++++|.+++....                
T Consensus        53 K~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~  132 (304)
T cd05101          53 KMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDE  132 (304)
T ss_pred             eecccccchHHHHHHHHHHHHHHhhccCCCchheeEEEecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcc
Confidence            4444333334567789999999999 89999999999999999999999999999999986431                


Q ss_pred             ----chHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcc
Q 044022           65 ----LPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPE  140 (241)
Q Consensus        65 ----~~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE  140 (241)
                          .....++.|++.||.|||   +.+++|+||||+||+++.++.++|+|||.+................++..|+|||
T Consensus       133 ~~~~~~~~~~~~qi~~al~~LH---~~givH~dlkp~Nili~~~~~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aPE  209 (304)
T cd05101         133 QMTFKDLVSCTYQVARGMEYLA---SQKCIHRDLAARNVLVTENNVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPE  209 (304)
T ss_pred             cccHHHHHHHHHHHHHHHHHHH---HCCeeecccccceEEEcCCCcEEECCCccceecccccccccccCCCCCceeeCch
Confidence                024678899999999999   8999999999999999999999999999988665433222222334567899999


Q ss_pred             cccccCCCcchhhHHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHH
Q 044022          141 YISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLH  219 (241)
Q Consensus       141 ~~~~~~~~~~~Di~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (241)
                      ++.+..++.++||||||+++|++++ |..||...         ...+...... .......     ..        ..+.
T Consensus       210 ~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~---------~~~~~~~~~~-~~~~~~~-----~~--------~~~~  266 (304)
T cd05101         210 ALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGI---------PVEELFKLLK-EGHRMDK-----PA--------NCTN  266 (304)
T ss_pred             hhccCCCCchhhHHHHHHHHHHHHcCCCCCcccC---------CHHHHHHHHH-cCCcCCC-----CC--------CCCH
Confidence            9988889999999999999999998 78887432         1122222221 1111111     01        2236


Q ss_pred             HHHHHHHHhccCCCCCCCCCCC
Q 044022          220 ASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       220 ~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      .+.+++.+||..+|++|||+.|
T Consensus       267 ~~~~li~~cl~~~p~~Rps~~e  288 (304)
T cd05101         267 ELYMMMRDCWHAIPSHRPTFKQ  288 (304)
T ss_pred             HHHHHHHHHcccChhhCCCHHH
Confidence            7889999999999999999854

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=100.00  E-value=1.6e-36  Score=241.07  Aligned_cols=203  Identities=19%  Similarity=0.299  Sum_probs=158.2

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC------chHHHHHHHHHHHhchhhcCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP------LPRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~------~~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ....+.+|++++++++|+||+++++++...+..++++||+++++|.+++....      ...+.++.|++.||+|||   
T Consensus        45 ~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH---  121 (263)
T cd05052          45 EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE---  121 (263)
T ss_pred             HHHHHHHHHHHHHhCCCCChhheEEEEcCCCCcEEEEEeCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            35678999999999999999999999999999999999999999999986532      145778999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~  165 (241)
                      +.+++|+||||+||+++.++.++|+|||.+.......... ......+..|+|||.+.+..++.++||||||+++|+|++
T Consensus       122 ~~~i~H~dlkp~nil~~~~~~~kl~df~~~~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t  200 (263)
T cd05052         122 KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTA-HAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT  200 (263)
T ss_pred             hCCEeecccCcceEEEcCCCcEEeCCCccccccccceeec-cCCCCCccccCCHHHhccCCCCchhHHHHHHHHHHHHHc
Confidence            8999999999999999999999999999987654432111 111223567999999988889999999999999999998


Q ss_pred             -cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          166 -GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       166 -g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                       |..||...         ...+...... ....     .....        ..+..+.+++.+||..||++|||+.|
T Consensus       201 ~g~~p~~~~---------~~~~~~~~~~-~~~~-----~~~~~--------~~~~~~~~li~~cl~~~p~~Rp~~~~  254 (263)
T cd05052         201 YGMSPYPGI---------DLSQVYELLE-KGYR-----MERPE--------GCPPKVYELMRACWQWNPSDRPSFAE  254 (263)
T ss_pred             CCCCCCCCC---------CHHHHHHHHH-CCCC-----CCCCC--------CCCHHHHHHHHHHccCCcccCCCHHH
Confidence             88888541         1111111111 1100     01111        12367899999999999999999864

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=100.00  E-value=2.5e-37  Score=257.15  Aligned_cols=206  Identities=16%  Similarity=0.218  Sum_probs=159.0

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc---hHHHHHHHHHHHhchhhcCCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL---PRLKIASDIVNSLAYLHFGFPRP   88 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~i~~~l~~lh~~~~~~   88 (241)
                      ....+.+|+.+++.++||||+++++++..++..++||||+++|+|.+++.....   ....++.+++.||.|||   +.+
T Consensus        86 ~~~~~~~e~~il~~~~h~~iv~~~~~~~~~~~~~lv~Ey~~gg~L~~~l~~~~l~~~~~~~~~~qi~~aL~~LH---~~~  162 (370)
T cd05596          86 DSAFFWEERDIMAHANSEWIVQLHYAFQDDKYLYMVMEYMPGGDLVNLMSNYDIPEKWARFYTAEVVLALDAIH---SMG  162 (370)
T ss_pred             hHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEEEEEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH---HCC
Confidence            345578899999999999999999999999999999999999999999876533   45678889999999999   999


Q ss_pred             ceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc----CCCcchhhHHHHHHHHHHH
Q 044022           89 IVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC----VLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        89 ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~----~~~~~~Di~s~G~~~~~~~  164 (241)
                      ++||||||+|||++.++.++|+|||.+......... ......|++.|+|||++.+.    .++.++||||||+++|+|+
T Consensus       163 ivHrDLkp~NILl~~~~~~kL~DfG~~~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~DiwSlGvilyell  241 (370)
T cd05596         163 FIHRDVKPDNMLLDKSGHLKLADFGTCMKMDANGMV-RCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEML  241 (370)
T ss_pred             eeccCCCHHHEEEcCCCCEEEEeccceeeccCCCcc-cCCCCCCCcCeECHHHhccCCCCCCCCCceeeeehhHHHHHHH
Confidence            999999999999999999999999998765433211 12345689999999998653    4788999999999999999


Q ss_pred             hcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCC--CCCCCC
Q 044022          165 AGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPED--RPTMVD  241 (241)
Q Consensus       165 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~--Rpt~~e  241 (241)
                      +|+.||....         .................+.     .      ...+..+.+++.+||..+|.+  |||++|
T Consensus       242 tG~~Pf~~~~---------~~~~~~~i~~~~~~~~~~~-----~------~~~s~~~~~li~~~L~~~p~r~~R~s~~e  300 (370)
T cd05596         242 VGDTPFYADS---------LVGTYSKIMDHKNSLTFPD-----D------IEISKQAKDLICAFLTDREVRLGRNGVDE  300 (370)
T ss_pred             hCCCCcCCCC---------HHHHHHHHHcCCCcCCCCC-----c------CCCCHHHHHHHHHHccChhhccCCCCHHH
Confidence            9999996521         1111122111111111111     0      012357889999999999988  998753

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=100.00  E-value=6.1e-37  Score=250.41  Aligned_cols=200  Identities=19%  Similarity=0.225  Sum_probs=157.0

Q ss_pred             ccHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCC
Q 044022           11 HTYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~   85 (241)
                      .....+..|.+++..+ +||||+++++++...+..|+||||+++++|.+.+.....    ....++.+++.||.|||   
T Consensus        37 ~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH---  113 (321)
T cd05591          37 DDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEYVNGGDLMFQIQRSRKFDEPRSRFYAAEVTLALMFLH---  113 (321)
T ss_pred             hHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            3455677899999876 899999999999999999999999999999988865422    45678999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~  165 (241)
                      +.+++||||||+||+++.++.++|+|||.+........  ......|++.|+|||++.+..++.++||||||+++|+|++
T Consensus       114 ~~~ivHrDikp~Nill~~~~~~kL~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~t  191 (321)
T cd05591         114 RHGVIYRDLKLDNILLDAEGHCKLADFGMCKEGILNGV--TTTTFCGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMA  191 (321)
T ss_pred             HCCeeccCCCHHHeEECCCCCEEEeecccceecccCCc--cccccccCccccCHHHHcCCCCCCccceechhHHHHHHhc
Confidence            99999999999999999999999999999875432221  1123468999999999998889999999999999999999


Q ss_pred             cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCC
Q 044022          166 GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM  239 (241)
Q Consensus       166 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~  239 (241)
                      |+.||....         ..+.........    ...   ..        ..+..+.+++.+||+.||++||++
T Consensus       192 g~~Pf~~~~---------~~~~~~~i~~~~----~~~---p~--------~~~~~~~~ll~~~L~~dp~~R~~~  241 (321)
T cd05591         192 GQPPFEADN---------EDDLFESILHDD----VLY---PV--------WLSKEAVSILKAFMTKNPNKRLGC  241 (321)
T ss_pred             CCCCCCCCC---------HHHHHHHHHcCC----CCC---CC--------CCCHHHHHHHHHHhccCHHHcCCC
Confidence            999996421         111122211111    000   01        112568899999999999999954

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=3.4e-37  Score=253.40  Aligned_cols=157  Identities=22%  Similarity=0.262  Sum_probs=130.4

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCC-----cceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhh
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTP-----IPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLH   82 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~-----~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh   82 (241)
                      ...++.+|++++++++||||+++++++....     ..++||||+. ++|.+++.....    ....++.|++.||.|||
T Consensus        42 ~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH  120 (338)
T cd07859          42 DATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIYVVFELME-SDLHQVIKANDDLTPEHHQFFLYQLLRALKYIH  120 (338)
T ss_pred             hHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceEEEEEecCC-CCHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence            4557889999999999999999999886432     4799999995 799988865422    46678999999999999


Q ss_pred             cCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCc-ceeecccccCCCccCcccccc--cCCCcchhhHHHHHH
Q 044022           83 FGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGET-HITTDRVIGTRGYSAPEYISI--CVLNEKSNVFSFGAF  159 (241)
Q Consensus        83 ~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~-~~~~~~~~~~~~~~aPE~~~~--~~~~~~~Di~s~G~~  159 (241)
                         +++++||||||+|||++.++.+||+|||.+........ ........+++.|+|||++.+  ..++.++||||||++
T Consensus       121 ---~~~ivH~dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DvwSlGvv  197 (338)
T cd07859         121 ---TANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCI  197 (338)
T ss_pred             ---HCCeecCCCCHHHeEECCCCcEEEccCccccccccccCccccccCCCCCCCcCCHHHHhccccccCchhHHHHHHHH
Confidence               89999999999999999999999999999875432211 111123468899999999875  578899999999999


Q ss_pred             HHHHHhcCccccc
Q 044022          160 LFELLAGRIHIWD  172 (241)
Q Consensus       160 ~~~~~~g~~p~~~  172 (241)
                      +|+|++|+.||..
T Consensus       198 l~el~tg~~pf~~  210 (338)
T cd07859         198 FAEVLTGKPLFPG  210 (338)
T ss_pred             HHHHHcCCCCCCC
Confidence            9999999999954

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=100.00  E-value=1.3e-36  Score=240.87  Aligned_cols=202  Identities=21%  Similarity=0.270  Sum_probs=156.6

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ..+++.+|+.+++.+.|+||+++++++. .+..++|+||+++++|.+++....    .....++.|++.|+.|||   ++
T Consensus        39 ~~~~~~~e~~~l~~l~h~~i~~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH---~~  114 (257)
T cd05116          39 LKDELLREANVMQQLDNPYIVRMIGICE-AESWMLVMELAELGPLNKFLQKNKHVTEKNITELVHQVSMGMKYLE---ET  114 (257)
T ss_pred             HHHHHHHHHHHHHhCCCCCcceEEEEEc-CCCcEEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HC
Confidence            4667899999999999999999999885 456799999999999999986542    256789999999999999   89


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCCccee-ecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh-
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHIT-TDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA-  165 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~-~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~-  165 (241)
                      +++|+||||.||+++.++.++|+|||.+........... .....++..|+|||.+....++.++|+||||+++|+|++ 
T Consensus       115 ~i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~  194 (257)
T cd05116         115 NFVHRDLAARNVLLVTQHYAKISDFGLSKALGADENYYKAKTHGKWPVKWYAPECMNYYKFSSKSDVWSFGVLMWEAFSY  194 (257)
T ss_pred             CEeecccchhhEEEcCCCeEEECCCccccccCCCCCeeeecCCCCCCccccCHhHhccCCcCchhHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999876544322111 112234578999999988888999999999999999998 


Q ss_pred             cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          166 GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       166 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                      |..||....         ..+..... ..+....     ...        ..+..+.+++.+||+.||++|||++
T Consensus       195 g~~p~~~~~---------~~~~~~~i-~~~~~~~-----~~~--------~~~~~l~~li~~~~~~~p~~Rp~~~  246 (257)
T cd05116         195 GQKPYKGMK---------GNEVTQMI-ESGERME-----CPQ--------RCPPEMYDLMKLCWTYGVDERPGFA  246 (257)
T ss_pred             CCCCCCCCC---------HHHHHHHH-HCCCCCC-----CCC--------CCCHHHHHHHHHHhccCchhCcCHH
Confidence            999985421         11112211 1111111     111        1235788999999999999999985

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=100.00  E-value=8.6e-37  Score=249.19  Aligned_cols=199  Identities=23%  Similarity=0.268  Sum_probs=157.7

Q ss_pred             cHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ....+.+|+++++.+ +||||+++++++...+..++||||+++++|..++.....    ....++.+++.||.|||   +
T Consensus        38 ~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~qi~~~l~~LH---~  114 (318)
T cd05570          38 DVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEYVNGGDLMFHIQRSGRFDEPRARFYAAEIVLGLQFLH---E  114 (318)
T ss_pred             HHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---h
Confidence            456678899999888 799999999999999999999999999999988865522    46778999999999999   9


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhc
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      .+++||||||+||+++.++.++|+|||++........  ......|+..|+|||++.+..++.++|+||||+++|+|++|
T Consensus       115 ~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslGvil~~l~~G  192 (318)
T cd05570         115 RGIIYRDLKLDNVLLDSEGHIKIADFGMCKEGILGGV--TTSTFCGTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAG  192 (318)
T ss_pred             CCeEccCCCHHHeEECCCCcEEecccCCCeecCcCCC--cccceecCccccCHHHhcCCCCCcchhhhhHHHHHHHHhhC
Confidence            9999999999999999999999999999865322211  11234688999999999988999999999999999999999


Q ss_pred             CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCC
Q 044022          167 RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM  239 (241)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~  239 (241)
                      +.||....         .......... ...      ....        ..+..+.+++.+||..||++|||+
T Consensus       193 ~~pf~~~~---------~~~~~~~i~~-~~~------~~~~--------~~~~~~~~li~~~l~~dP~~R~s~  241 (318)
T cd05570         193 QSPFEGDD---------EDELFQSILE-DEV------RYPR--------WLSKEAKSILKSFLTKNPEKRLGC  241 (318)
T ss_pred             CCCCCCCC---------HHHHHHHHHc-CCC------CCCC--------cCCHHHHHHHHHHccCCHHHcCCC
Confidence            99995421         1111111111 100      0111        122568899999999999999998

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=100.00  E-value=1.3e-36  Score=243.43  Aligned_cols=206  Identities=19%  Similarity=0.290  Sum_probs=157.7

Q ss_pred             cccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----------chHHHHHHHHHHHh
Q 044022           10 RHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----------LPRLKIASDIVNSL   78 (241)
Q Consensus        10 ~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----------~~~~~~~~~i~~~l   78 (241)
                      ......|.+|+.++++++|+||+++++++...+..++|+||+++++|.+++....           ...+.++.+|+.|+
T Consensus        50 ~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l  129 (277)
T cd05036          50 EQDESDFLMEALIMSKFNHQNIVRLIGVSFERLPRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGC  129 (277)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCcEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            3345679999999999999999999999999889999999999999999985432           13567999999999


Q ss_pred             chhhcCCCCCceeccCCCCCeeecCCC---CeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHH
Q 044022           79 AYLHFGFPRPIVLRNFKTQNILFNEEN---VAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFS  155 (241)
Q Consensus        79 ~~lh~~~~~~ivh~dl~~~nil~~~~~---~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s  155 (241)
                      .|||   +.+++|+||||+||+++.++   .++++|||.+.................+..|+|||++.+..++.++||||
T Consensus       130 ~~LH---~~~ivH~dlkp~nil~~~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Diws  206 (277)
T cd05036         130 KYLE---ENHFIHRDIAARNCLLTCKGPGRVAKIADFGMARDIYRASYYRKGGRAMLPIKWMPPEAFLDGIFTSKTDVWS  206 (277)
T ss_pred             HHHH---HCCEeecccchheEEEeccCCCcceEeccCccccccCCccceecCCCCCccHhhCCHHHHhcCCcCchhHHHH
Confidence            9999   89999999999999998654   68999999987653322211112223456799999999888999999999


Q ss_pred             HHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCC
Q 044022          156 FGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPE  234 (241)
Q Consensus       156 ~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~  234 (241)
                      ||+++|+|++ |..||.....         .+...........      ....        ..+..+.+++.+||+.+|+
T Consensus       207 lG~il~el~~~g~~pf~~~~~---------~~~~~~~~~~~~~------~~~~--------~~~~~~~~~i~~cl~~~p~  263 (277)
T cd05036         207 FGVLLWEIFSLGYMPYPGRTN---------QEVMEFVTGGGRL------DPPK--------GCPGPVYRIMTDCWQHTPE  263 (277)
T ss_pred             HHHHHHHHHcCCCCCCCCCCH---------HHHHHHHHcCCcC------CCCC--------CCCHHHHHHHHHHcCCCcc
Confidence            9999999997 9999854211         1112221111110      0111        1225788999999999999


Q ss_pred             CCCCCCC
Q 044022          235 DRPTMVD  241 (241)
Q Consensus       235 ~Rpt~~e  241 (241)
                      +|||+.|
T Consensus       264 ~Rps~~~  270 (277)
T cd05036         264 DRPNFAT  270 (277)
T ss_pred             cCcCHHH
Confidence            9999864

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=100.00  E-value=1.3e-36  Score=239.74  Aligned_cols=213  Identities=22%  Similarity=0.278  Sum_probs=161.9

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHH
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVN   76 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~   76 (241)
                      |++...........+.+|++++++++||||+++++++...+..++||||+++++|.+++....     .....++.+++.
T Consensus        25 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~  104 (250)
T cd05085          25 KTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVMELVPGGDFLSFLRKKKDELKTKQLVKFALDAAA  104 (250)
T ss_pred             EecCCcCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCCccEEEEECCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence            444433333445678999999999999999999999999999999999999999999886532     246788999999


Q ss_pred             HhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHH
Q 044022           77 SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSF  156 (241)
Q Consensus        77 ~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~  156 (241)
                      ||.|+|   +.+++|+||+|+||+++.++.++++|||.+.......... .....++..|+|||++.+..++.++|+|||
T Consensus       105 ~l~~lH---~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~sl  180 (250)
T cd05085         105 GMAYLE---SKNCIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIYSS-SGLKQIPIKWTAPEALNYGRYSSESDVWSY  180 (250)
T ss_pred             HHHHHH---hCCeeecccChheEEEcCCCeEEECCCccceecccccccc-CCCCCCcccccCHHHhccCCCCchhHHHHH
Confidence            999999   9999999999999999999999999999986543322111 112234567999999998889999999999


Q ss_pred             HHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCC
Q 044022          157 GAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPED  235 (241)
Q Consensus       157 G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~  235 (241)
                      |+++|++++ |..||.....         ....... ..+....     ...        ..+..+.+++.+||..+|++
T Consensus       181 G~ll~~~~~~g~~p~~~~~~---------~~~~~~~-~~~~~~~-----~~~--------~~~~~~~~li~~~l~~~p~~  237 (250)
T cd05085         181 GILLWETFSLGVCPYPGMTN---------QQAREQV-EKGYRMS-----CPQ--------KCPDDVYKVMQRCWDYKPEN  237 (250)
T ss_pred             HHHHHHHhcCCCCCCCCCCH---------HHHHHHH-HcCCCCC-----CCC--------CCCHHHHHHHHHHcccCccc
Confidence            999999998 9999854211         1111111 1111100     011        12357899999999999999


Q ss_pred             CCCCCC
Q 044022          236 RPTMVD  241 (241)
Q Consensus       236 Rpt~~e  241 (241)
                      |||+.|
T Consensus       238 Rp~~~~  243 (250)
T cd05085         238 RPKFSE  243 (250)
T ss_pred             CCCHHH
Confidence            999754

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=100.00  E-value=1.6e-37  Score=254.31  Aligned_cols=198  Identities=16%  Similarity=0.225  Sum_probs=156.2

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCC-
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFP-   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~-   86 (241)
                      ....+.+|+++++.++||||+++++++...+..++||||+++|+|..++.....    ....++.||+.||.|||   + 
T Consensus        38 ~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH---~~  114 (325)
T cd05594          38 EVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRERVFSEDRARFYGAEIVSALDYLH---SE  114 (325)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hc
Confidence            456678899999999999999999999999999999999999999988865422    45678899999999999   6 


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhc
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      .+++||||||+|||++.++.++|+|||++.........  .....|++.|+|||++.+..++.++||||||+++|+|++|
T Consensus       115 ~~ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~tG  192 (325)
T cd05594         115 KNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGAT--MKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCG  192 (325)
T ss_pred             CCEEecCCCCCeEEECCCCCEEEecCCCCeecCCCCcc--cccccCCcccCCHHHHccCCCCCccccccccceeeeeccC
Confidence            79999999999999999999999999998753322111  1234689999999999988899999999999999999999


Q ss_pred             CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCC
Q 044022          167 RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT  238 (241)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt  238 (241)
                      ..||.....         .+.........       ..+..        ..+..+.+++.+||+.||++|++
T Consensus       193 ~~Pf~~~~~---------~~~~~~i~~~~-------~~~p~--------~~~~~~~~li~~~L~~dP~~R~~  240 (325)
T cd05594         193 RLPFYNQDH---------EKLFELILMEE-------IRFPR--------TLSPEAKSLLSGLLKKDPKQRLG  240 (325)
T ss_pred             CCCCCCCCH---------HHHHHHHhcCC-------CCCCC--------CCCHHHHHHHHHHhhcCHHHhCC
Confidence            999954211         11111111100       00111        12256889999999999999973

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=100.00  E-value=9.7e-37  Score=248.65  Aligned_cols=200  Identities=19%  Similarity=0.225  Sum_probs=156.7

Q ss_pred             cHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ....+..|..++... +||||+++++++...+..++||||+++|+|..++.....    ....++.|++.||+|||   +
T Consensus        38 ~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~g~L~~~i~~~~~~~~~~~~~~~~qi~~~l~~lH---~  114 (316)
T cd05620          38 DVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFLNGGDLMFHIQDKGRFDLYRATFYAAEIVCGLQFLH---S  114 (316)
T ss_pred             hHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEECCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            345667788888765 899999999999999999999999999999998865422    45678999999999999   9


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhc
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      ++++||||||+||+++.++.++|+|||.+........  ......|+..|+|||++.+..++.++||||||+++|+|++|
T Consensus       115 ~~ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g  192 (316)
T cd05620         115 KGIIYRDLKLDNVMLDRDGHIKIADFGMCKENVFGDN--RASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIG  192 (316)
T ss_pred             CCeEecCCCHHHeEECCCCCEEeCccCCCeecccCCC--ceeccCCCcCccCHHHHcCCCCCcccchhhhHHHHHHHHhC
Confidence            9999999999999999999999999999864322211  12335689999999999988999999999999999999999


Q ss_pred             CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          167 RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                      ..||.....         .+....... .      .+.....        .+..+.+++.+||+.||++|||+.
T Consensus       193 ~~Pf~~~~~---------~~~~~~~~~-~------~~~~~~~--------~~~~~~~li~~~l~~dP~~R~~~~  242 (316)
T cd05620         193 QSPFHGDDE---------DELFESIRV-D------TPHYPRW--------ITKESKDILEKLFERDPTRRLGVV  242 (316)
T ss_pred             CCCCCCCCH---------HHHHHHHHh-C------CCCCCCC--------CCHHHHHHHHHHccCCHHHcCCCh
Confidence            999964211         111111111 1      0111111        225688999999999999999974

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=100.00  E-value=1.1e-36  Score=242.75  Aligned_cols=205  Identities=23%  Similarity=0.313  Sum_probs=159.0

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----------chHHHHHHHHHHHhc
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----------LPRLKIASDIVNSLA   79 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----------~~~~~~~~~i~~~l~   79 (241)
                      .....+.+|+++++.++||||+++++++...+..++|+||+++++|.+++....           ...+.++.+++.|+.
T Consensus        41 ~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  120 (269)
T cd05044          41 QEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCV  120 (269)
T ss_pred             hhHHHHHHHHHHHHhcCCCCeeeEeeeecCCCCeEEEEeccCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHH
Confidence            456678999999999999999999999998889999999999999999985421           135678999999999


Q ss_pred             hhhcCCCCCceeccCCCCCeeecCCC-----CeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhH
Q 044022           80 YLHFGFPRPIVLRNFKTQNILFNEEN-----VAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVF  154 (241)
Q Consensus        80 ~lh~~~~~~ivh~dl~~~nil~~~~~-----~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~  154 (241)
                      |||   +.+++|+||+|+||+++.++     .++++|||.+................++..|+|||++.+..++.++|||
T Consensus       121 ~lH---~~~i~H~dl~p~nil~~~~~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~  197 (269)
T cd05044         121 YLE---QMHFIHRDLAARNCLVSEKGYDADRVVKIGDFGLARDIYKSDYYRKEGEGLLPVRWMAPESLLDGKFTTQSDVW  197 (269)
T ss_pred             HHH---hCCcccCCCChheEEEecCCCCCCcceEECCcccccccccccccccCcccCCCccccCHHHHccCCcccchhHH
Confidence            999   89999999999999999887     8999999998755433222222233456789999999988899999999


Q ss_pred             HHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCC
Q 044022          155 SFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSP  233 (241)
Q Consensus       155 s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p  233 (241)
                      |||+++|+|++ |..||.....         .+..... ..+...     ...        ...+..+.+++.+||..+|
T Consensus       198 slG~il~ellt~g~~p~~~~~~---------~~~~~~~-~~~~~~-----~~~--------~~~~~~~~~li~~~l~~~p  254 (269)
T cd05044         198 SFGVLMWEILTLGQQPYPALNN---------QEVLQHV-TAGGRL-----QKP--------ENCPDKIYQLMTNCWAQDP  254 (269)
T ss_pred             HHHHHHHHHHHcCCCCCcccCH---------HHHHHHH-hcCCcc-----CCc--------ccchHHHHHHHHHHcCCCc
Confidence            99999999998 9999854211         1111111 111000     000        1233678899999999999


Q ss_pred             CCCCCCCC
Q 044022          234 EDRPTMVD  241 (241)
Q Consensus       234 ~~Rpt~~e  241 (241)
                      ++|||+++
T Consensus       255 ~~Rp~~~~  262 (269)
T cd05044         255 SERPTFDR  262 (269)
T ss_pred             ccCCCHHH
Confidence            99999864

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=100.00  E-value=1.5e-36  Score=240.43  Aligned_cols=214  Identities=23%  Similarity=0.311  Sum_probs=167.3

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC---------Cc----hHH
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA---------PL----PRL   68 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~---------~~----~~~   68 (241)
                      |++.........+.+.+|+++++.++|+|++++++++......++|+||+++++|.+++...         ..    ...
T Consensus        29 k~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~  108 (262)
T cd00192          29 KTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLL  108 (262)
T ss_pred             EeeccccchhHHHHHHHHHHHHhhcCCCChheeeeeecCCCceEEEEEeccCCcHHHHHhhccccccccccccCCHHHHH
Confidence            44444333334778999999999999999999999999989999999999999999998764         11    467


Q ss_pred             HHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCC
Q 044022           69 KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLN  148 (241)
Q Consensus        69 ~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~  148 (241)
                      .++.+++.||.+||   +.+++|+||+|+||+++.++.++|+|||.+................++..|+|||.+....++
T Consensus       109 ~~~~~l~~al~~lH---~~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  185 (262)
T cd00192         109 SFAIQIAKGMEYLA---SKKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDDDYYRKKTGGKLPIRWMAPESLKDGIFT  185 (262)
T ss_pred             HHHHHHHHHHHHHH---cCCcccCccCcceEEECCCCcEEEcccccccccccccccccccCCCcCccccCHHHhccCCcc
Confidence            89999999999999   999999999999999999999999999999876554322222334567889999999888899


Q ss_pred             cchhhHHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHH
Q 044022          149 EKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLE  227 (241)
Q Consensus       149 ~~~Di~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  227 (241)
                      .++||||+|+++|+|++ |..||....         ..+...... .+....     ...        ..+..+.+++.+
T Consensus       186 ~~~Di~slG~il~~l~~~g~~p~~~~~---------~~~~~~~~~-~~~~~~-----~~~--------~~~~~~~~li~~  242 (262)
T cd00192         186 SKSDVWSFGVLLWEIFTLGATPYPGLS---------NEEVLEYLR-KGYRLP-----KPE--------YCPDELYELMLS  242 (262)
T ss_pred             hhhccHHHHHHHHHHHhcCCCCCCCCC---------HHHHHHHHH-cCCCCC-----CCc--------cCChHHHHHHHH
Confidence            99999999999999999 599986531         111111111 111111     111        223678999999


Q ss_pred             hccCCCCCCCCCCC
Q 044022          228 CVNNSPEDRPTMVD  241 (241)
Q Consensus       228 cl~~~p~~Rpt~~e  241 (241)
                      ||..||++|||++|
T Consensus       243 ~l~~~p~~Rps~~~  256 (262)
T cd00192         243 CWQLDPEDRPTFSE  256 (262)
T ss_pred             HccCCcccCcCHHH
Confidence            99999999999864

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=100.00  E-value=9.4e-37  Score=245.53  Aligned_cols=214  Identities=24%  Similarity=0.351  Sum_probs=162.3

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----------------
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----------------   64 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----------------   64 (241)
                      |.+..+........+.+|+.++++++||||+++++++......++++||+++++|.+++....                 
T Consensus        41 K~~~~~~~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~  120 (288)
T cd05050          41 KMLKEEASADMQADFQREAALMAEFDHPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKC  120 (288)
T ss_pred             EecCCCcCHHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCccEEEEecCCCCCHHHHHHHcCccccccccccccccccc
Confidence            444333333345679999999999999999999999999899999999999999999986421                 


Q ss_pred             ---------chHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCC
Q 044022           65 ---------LPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRG  135 (241)
Q Consensus        65 ---------~~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~  135 (241)
                               ...+.++.+++.||.|||   +.+++|+||+|+||+++.++.++|+|||.+.................+..
T Consensus       121 ~~~~~~l~~~~~~~~~~~i~~aL~~lH---~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~  197 (288)
T cd05050         121 GLNPLPLSCTEQLCIAKQVAAGMAYLS---ERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKASENDAIPIR  197 (288)
T ss_pred             cccccccCHHHHHHHHHHHHHHHHHHH---hCCeecccccHhheEecCCCceEECccccceecccCccccccCCCccChh
Confidence                     134789999999999999   89999999999999999999999999999875433322111222334567


Q ss_pred             ccCcccccccCCCcchhhHHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhH
Q 044022          136 YSAPEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEK  214 (241)
Q Consensus       136 ~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (241)
                      |+|||++.+..++.++|+||||+++|+|++ |..||.....         .+..... ..+.....+     .       
T Consensus       198 y~aPE~~~~~~~~~~~Dv~slG~il~el~~~~~~p~~~~~~---------~~~~~~~-~~~~~~~~~-----~-------  255 (288)
T cd05050         198 WMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQPYYGMAH---------EEVIYYV-RDGNVLSCP-----D-------  255 (288)
T ss_pred             hcCHHHHhcCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCH---------HHHHHHH-hcCCCCCCC-----C-------
Confidence            999999988889999999999999999997 8888854211         1222221 111111111     1       


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          215 EQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       215 ~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                       ..+..+.+++.+||..+|++|||++|
T Consensus       256 -~~~~~l~~li~~~l~~~p~~Rpt~~e  281 (288)
T cd05050         256 -NCPLELYNLMRLCWSKLPSDRPSFAS  281 (288)
T ss_pred             -CCCHHHHHHHHHHcccCcccCCCHHH
Confidence             12357889999999999999999864

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=100.00  E-value=8.8e-37  Score=246.83  Aligned_cols=201  Identities=20%  Similarity=0.302  Sum_probs=155.3

Q ss_pred             cHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC--------------------chHHHH
Q 044022           12 TYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP--------------------LPRLKI   70 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~--------------------~~~~~~   70 (241)
                      ..+.+.+|++++.++ +||||+++++++...+..++++||+++++|.+++....                    .....+
T Consensus        45 ~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i  124 (297)
T cd05089          45 DHRDFAGELEVLCKLGHHPNIINLLGACENRGYLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQF  124 (297)
T ss_pred             HHHHHHHHHHHHHhhcCCCchhheEEEEccCCcceEEEEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHH
Confidence            456789999999999 79999999999999899999999999999999986431                    135778


Q ss_pred             HHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcc
Q 044022           71 ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEK  150 (241)
Q Consensus        71 ~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~  150 (241)
                      +.+++.||+|||   +.+++|+||||+||+++.++.++|+|||++.......   .......+..|+|||++.+..++.+
T Consensus       125 ~~qi~~al~~lH---~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~  198 (297)
T cd05089         125 ASDVATGMQYLS---EKQFIHRDLAARNVLVGENLASKIADFGLSRGEEVYV---KKTMGRLPVRWMAIESLNYSVYTTK  198 (297)
T ss_pred             HHHHHHHHHHHH---HCCcccCcCCcceEEECCCCeEEECCcCCCcccccee---ccCCCCcCccccCchhhccCCCCch
Confidence            999999999999   8999999999999999999999999999885332111   1111223456999999988889999


Q ss_pred             hhhHHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhc
Q 044022          151 SNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECV  229 (241)
Q Consensus       151 ~Di~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl  229 (241)
                      +||||||+++|+|++ |..||....         ..+..... ..+...     ....        ..+..+.+++.+||
T Consensus       199 ~DvwSlG~il~el~t~g~~pf~~~~---------~~~~~~~~-~~~~~~-----~~~~--------~~~~~~~~li~~~l  255 (297)
T cd05089         199 SDVWSFGVLLWEIVSLGGTPYCGMT---------CAELYEKL-PQGYRM-----EKPR--------NCDDEVYELMRQCW  255 (297)
T ss_pred             hhHHHHHHHHHHHHcCCCCCCCCCC---------HHHHHHHH-hcCCCC-----CCCC--------CCCHHHHHHHHHHc
Confidence            999999999999997 999995421         11111111 111100     0111        12357889999999


Q ss_pred             cCCCCCCCCCCC
Q 044022          230 NNSPEDRPTMVD  241 (241)
Q Consensus       230 ~~~p~~Rpt~~e  241 (241)
                      +.+|.+|||+++
T Consensus       256 ~~~p~~Rp~~~~  267 (297)
T cd05089         256 RDRPYERPPFAQ  267 (297)
T ss_pred             CCChhhCcCHHH
Confidence            999999999864

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=100.00  E-value=1.2e-36  Score=240.67  Aligned_cols=204  Identities=21%  Similarity=0.264  Sum_probs=162.2

Q ss_pred             cccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC------chHHHHHHHHHHHhchhhc
Q 044022           10 RHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP------LPRLKIASDIVNSLAYLHF   83 (241)
Q Consensus        10 ~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~------~~~~~~~~~i~~~l~~lh~   83 (241)
                      ......+.+|++++++++|||++++++++...+..++|+||+++++|.+++....      .....++.+++.||.||| 
T Consensus        40 ~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~~l~~al~~lH-  118 (256)
T cd08529          40 RREREEAIDEARVLAKLDSSYIIRYYESFLDKGKLNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLH-  118 (256)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCeehheeeeccCCEEEEEEEeCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH-
Confidence            3456778999999999999999999999999999999999999999999986541      145678999999999999 


Q ss_pred             CCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHH
Q 044022           84 GFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL  163 (241)
Q Consensus        84 ~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~  163 (241)
                        +.+++|+||+|+||+++.++.++|+|||.+..........  ....+++.|+|||+..+..++.++|+||||+++|+|
T Consensus       119 --~~~i~h~dl~~~nili~~~~~~~l~df~~~~~~~~~~~~~--~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l  194 (256)
T cd08529         119 --SKKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTNFA--NTIVGTPYYLSPELCEDKPYNEKSDVWALGVVLYEC  194 (256)
T ss_pred             --HCCcccCCCCcceEEEeCCCCEEEcccccceeccCccchh--hccccCccccCHHHhcCCCCCCccchHHHHHHHHHH
Confidence              8999999999999999999999999999987655432211  234578889999999988899999999999999999


Q ss_pred             HhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          164 LAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       164 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ++|+.||....         ..+..... ..+......     .        ..+..+.+++.+||+.+|++||++.|
T Consensus       195 ~~g~~p~~~~~---------~~~~~~~~-~~~~~~~~~-----~--------~~~~~~~~~i~~~l~~~p~~Rp~~~~  249 (256)
T cd08529         195 CTGKHPFDANN---------QGALILKI-IRGVFPPVS-----Q--------MYSQQLAQLIDQCLTKDYRQRPDTFQ  249 (256)
T ss_pred             HhCCCCCCCCC---------HHHHHHHH-HcCCCCCCc-----c--------ccCHHHHHHHHHHccCCcccCcCHHH
Confidence            99999995421         11111111 111111111     1        22357899999999999999999753

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=100.00  E-value=7.1e-37  Score=250.21  Aligned_cols=199  Identities=20%  Similarity=0.211  Sum_probs=155.1

Q ss_pred             HHHHHHHHH-HHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCCC
Q 044022           13 YGSCINNIT-YAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        13 ~~~~~~e~~-~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ..++.+|.. +++.++||||+++++++...+..++||||+++|+|..++.....    ....++.||+.||.|||   +.
T Consensus        39 ~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH---~~  115 (323)
T cd05575          39 QKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDYVNGGELFFHLQRERSFPEPRARFYAAEIASALGYLH---SL  115 (323)
T ss_pred             HHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEEcCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HC
Confidence            345556655 46778999999999999999999999999999999998865432    45678999999999999   99


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcC
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR  167 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~  167 (241)
                      +++||||||+|||++.++.+||+|||++........  ......|++.|+|||++.+..++.++||||||+++|+|++|.
T Consensus       116 givH~dikp~NIll~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~  193 (323)
T cd05575         116 NIIYRDLKPENILLDSQGHVVLTDFGLCKEGIEHSK--TTSTFCGTPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGL  193 (323)
T ss_pred             CeEeCCCCHHHeEECCCCcEEEeccCCCcccccCCC--ccccccCChhhcChhhhcCCCCCccccccccchhhhhhhcCC
Confidence            999999999999999999999999999865322211  112346899999999999888999999999999999999999


Q ss_pred             cccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          168 IHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       168 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                      .||....         ..+......... .      .+.+.        .+..+.+++.+||+.||++||++.
T Consensus       194 ~pf~~~~---------~~~~~~~i~~~~-~------~~~~~--------~~~~~~~li~~~l~~~p~~R~~~~  242 (323)
T cd05575         194 PPFYSRD---------TAEMYDNILNKP-L------RLKPN--------ISVSARHLLEGLLQKDRTKRLGAK  242 (323)
T ss_pred             CCCCCCC---------HHHHHHHHHcCC-C------CCCCC--------CCHHHHHHHHHHhhcCHHhCCCCC
Confidence            9996521         111112211110 0      11111        125688999999999999999984

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=100.00  E-value=1.8e-36  Score=246.99  Aligned_cols=200  Identities=21%  Similarity=0.246  Sum_probs=156.8

Q ss_pred             cHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ....+..|..++... +||||+++++++...+..++||||+++|+|.+++....    .....++.|++.||.|||   +
T Consensus        38 ~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~al~~LH---~  114 (316)
T cd05619          38 DVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEYLNGGDLMFHIQSCHKFDLPRATFYAAEIICGLQFLH---S  114 (316)
T ss_pred             hHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---h
Confidence            345567788888764 99999999999999999999999999999999986532    246778999999999999   9


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhc
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      .+++||||||+||+++.++.++|+|||++........  ......|+..|+|||++.+..++.++||||||+++|+|++|
T Consensus       115 ~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G  192 (316)
T cd05619         115 KGIVYRDLKLDNILLDTDGHIKIADFGMCKENMLGDA--KTCTFCGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIG  192 (316)
T ss_pred             CCeEeCCCCHHHEEECCCCCEEEccCCcceECCCCCC--ceeeecCCccccCHHHHcCCCCCchhhhhhHHHHHHHHHhC
Confidence            9999999999999999999999999999875322211  11234689999999999988899999999999999999999


Q ss_pred             CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          167 RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                      +.||....         ..+.........       +....        ..+..+.+++.+||+.||++||++.
T Consensus       193 ~~pf~~~~---------~~~~~~~i~~~~-------~~~~~--------~~~~~~~~li~~~l~~~P~~R~~~~  242 (316)
T cd05619         193 QSPFHGHD---------EEELFQSIRMDN-------PCYPR--------WLTREAKDILVKLFVREPERRLGVK  242 (316)
T ss_pred             CCCCCCCC---------HHHHHHHHHhCC-------CCCCc--------cCCHHHHHHHHHHhccCHhhcCCCh
Confidence            99996421         111122111111       01111        1225678999999999999999985

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=100.00  E-value=1.2e-36  Score=254.68  Aligned_cols=215  Identities=20%  Similarity=0.293  Sum_probs=162.5

Q ss_pred             cccccccccccHHHHHHHHHHHHhcC-CCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc---------------
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMS-HNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL---------------   65 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~-h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~---------------   65 (241)
                      |.+.........+.+.+|++++.++. ||||++++++|...+..++|+||+++|+|.+++.....               
T Consensus        73 K~l~~~~~~~~~~~~~~E~~~l~~l~~H~niv~~~~~~~~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~  152 (401)
T cd05107          73 KMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLLGACTKGGPIYIITEYCRYGDLVDYLHRNKHTFLQYYLDKNRDDGS  152 (401)
T ss_pred             EecCCCCChhHHHHHHHHHHHHHhcCCCCCeEEEEEEEccCCCcEEEEeccCCCcHHHHHHhccccchhhhccccccccc
Confidence            45544333344567899999999997 99999999999999999999999999999998854210               


Q ss_pred             --------------------------------------------------------------------------------
Q 044022           66 --------------------------------------------------------------------------------   65 (241)
Q Consensus        66 --------------------------------------------------------------------------------   65 (241)
                                                                                                      
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (401)
T cd05107         153 LISGGSTPLSQRKSHVSLGSESDGGYMDMSKDESADYVPMQDMKGTVKYADIESSNYESPYDQYLPSAPERTRRDTLINE  232 (401)
T ss_pred             ccccccccccccccchhhhhccCccccccCCccccCccchhcchhhhhhhhhhccCcCCchhhhhcccCCCcchhhhhcC
Confidence                                                                                            


Q ss_pred             -------hHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccC
Q 044022           66 -------PRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA  138 (241)
Q Consensus        66 -------~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~a  138 (241)
                             ..+.++.+++.||.|||   +.+++||||||+|||++.++.++|+|||++................++..|+|
T Consensus       233 ~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrdlkp~NiLl~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~a  309 (401)
T cd05107         233 SPALSYMDLVGFSYQVANGMEFLA---SKNCVHRDLAARNVLICEGKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMA  309 (401)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHh---cCCcCcccCCcceEEEeCCCEEEEEecCcceecccccccccCCCcCCCCceeC
Confidence                   13567889999999999   89999999999999999999999999999876433222222223456788999


Q ss_pred             cccccccCCCcchhhHHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHH
Q 044022          139 PEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQ  217 (241)
Q Consensus       139 PE~~~~~~~~~~~Di~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (241)
                      ||.+....++.++||||||+++|||++ |..||.....         .+........+....     ...        ..
T Consensus       310 PE~~~~~~~~~~~DvwslGvil~e~l~~g~~P~~~~~~---------~~~~~~~~~~~~~~~-----~p~--------~~  367 (401)
T cd05107         310 PESIFNNLYTTLSDVWSFGILLWEIFTLGGTPYPELPM---------NEQFYNAIKRGYRMA-----KPA--------HA  367 (401)
T ss_pred             hHHhcCCCCCcHhHHHHHHHHHHHHHHcCCCCCCCCCc---------hHHHHHHHHcCCCCC-----CCC--------CC
Confidence            999988889999999999999999998 8889854211         111111111111110     111        12


Q ss_pred             HHHHHHHHHHhccCCCCCCCCCCC
Q 044022          218 LHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       218 ~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +..+.+++.+||..+|.+|||++|
T Consensus       368 ~~~l~~li~~cl~~~P~~RPs~~e  391 (401)
T cd05107         368 SDEIYEIMQKCWEEKFEIRPDFSQ  391 (401)
T ss_pred             CHHHHHHHHHHcCCChhHCcCHHH
Confidence            357899999999999999999864

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2e-36  Score=240.38  Aligned_cols=205  Identities=20%  Similarity=0.222  Sum_probs=159.7

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ....+.+|++++++++||||+++++++..++..++|+||+++++|.+.+....    .....++.+++.|+.|||   +.
T Consensus        47 ~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~  123 (263)
T cd06625          47 EVNALECEIQLLKNLQHERIVQYYGCLRDDETLSIFMEYMPGGSVKDQLKAYGALTETVTRKYTRQILEGVEYLH---SN  123 (263)
T ss_pred             HHHHHHHHHHHHHhCCCCCeeeeEEEEccCCeEEEEEEECCCCcHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH---hC
Confidence            34578899999999999999999999999999999999999999999886542    245778999999999999   99


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCCccee-ecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhc
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHIT-TDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~-~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      +++|+||+|+||+++.++.++|+|||.+........... .....++..|+|||.+.+..++.++||||||+++|++++|
T Consensus       124 ~i~H~dl~p~nilv~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g  203 (263)
T cd06625         124 MIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICSSGTGMKSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTE  203 (263)
T ss_pred             CeecCCCCHHHEEEcCCCCEEEeecccceeccccccccccccCCCcCccccCcceeccCCCCchhhhHHHHHHHHHHHhC
Confidence            999999999999999999999999999875543211111 0223567889999999988899999999999999999999


Q ss_pred             CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          167 RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +.||.....         .+...........     ..+..        ..+..+.+++.+||..+|.+|||+.|
T Consensus       204 ~~p~~~~~~---------~~~~~~~~~~~~~-----~~~~~--------~~~~~~~~li~~~l~~~p~~Rpt~~~  256 (263)
T cd06625         204 KPPWAEFEA---------MAAIFKIATQPTN-----PQLPS--------HVSPDARNFLRRTFVENAKKRPSAEE  256 (263)
T ss_pred             CCCccccch---------HHHHHHHhccCCC-----CCCCc--------cCCHHHHHHHHHHhhcCcccCCCHHH
Confidence            999865211         0111111111100     11111        22356889999999999999999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=100.00  E-value=1.1e-36  Score=248.05  Aligned_cols=205  Identities=22%  Similarity=0.337  Sum_probs=157.1

Q ss_pred             ccHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----------------c---hHHH
Q 044022           11 HTYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----------------L---PRLK   69 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----------------~---~~~~   69 (241)
                      .....+.+|+++++++ +||||+++++++...+..++++||+++|+|.+++....                 .   ....
T Consensus        59 ~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  138 (314)
T cd05099          59 KDLADLISEMELMKLIGKHKNIINLLGVCTQEGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVS  138 (314)
T ss_pred             HHHHHHHHHHHHHHhccCCCCeeeEEEEEccCCceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHH
Confidence            4456788999999999 69999999999998889999999999999999985421                 1   2467


Q ss_pred             HHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCc
Q 044022           70 IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNE  149 (241)
Q Consensus        70 ~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~  149 (241)
                      ++.+++.||.|||   +++++|+||||+||+++.++.++|+|||.++...............++..|+|||++.+..++.
T Consensus       139 ~~~qi~~aL~~lH---~~gi~H~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  215 (314)
T cd05099         139 CAYQVARGMEYLE---SRRCIHRDLAARNVLVTEDNVMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEALFDRVYTH  215 (314)
T ss_pred             HHHHHHHHHHHHH---HCCeeeccccceeEEEcCCCcEEEccccccccccccccccccccCCCCccccCHHHHccCCcCc
Confidence            8999999999999   9999999999999999999999999999997654322111111223445799999998888999


Q ss_pred             chhhHHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHh
Q 044022          150 KSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLEC  228 (241)
Q Consensus       150 ~~Di~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c  228 (241)
                      ++||||||+++|++++ |..||....         ..+..... ........     ..        ..+..+.+++.+|
T Consensus       216 ~~DiwslG~~l~el~~~g~~p~~~~~---------~~~~~~~~-~~~~~~~~-----~~--------~~~~~l~~li~~c  272 (314)
T cd05099         216 QSDVWSFGILMWEIFTLGGSPYPGIP---------VEELFKLL-REGHRMDK-----PS--------NCTHELYMLMREC  272 (314)
T ss_pred             cchhhHHHHHHHHHHhCCCCCCCCCC---------HHHHHHHH-HcCCCCCC-----CC--------CCCHHHHHHHHHH
Confidence            9999999999999999 888885421         11111111 11111111     11        1225688999999


Q ss_pred             ccCCCCCCCCCCC
Q 044022          229 VNNSPEDRPTMVD  241 (241)
Q Consensus       229 l~~~p~~Rpt~~e  241 (241)
                      |..+|++|||+.|
T Consensus       273 l~~~p~~Rps~~~  285 (314)
T cd05099         273 WHAVPTQRPTFKQ  285 (314)
T ss_pred             cCCCcccCcCHHH
Confidence            9999999999753

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=100.00  E-value=2e-36  Score=242.58  Aligned_cols=213  Identities=21%  Similarity=0.234  Sum_probs=161.3

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc-----hHHHHHHHHHH
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL-----PRLKIASDIVN   76 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-----~~~~~~~~i~~   76 (241)
                      |++..+........+.+|+.+++.+.|+||+++++++... ..++++||+++|+|.+++.....     ..+.++.|++.
T Consensus        42 K~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-~~~l~~~~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~  120 (279)
T cd05109          42 KVLRENTSPKANKEILDEAYVMAGVGSPYVCRLLGICLTS-TVQLVTQLMPYGCLLDYVRENKDRIGSQDLLNWCVQIAK  120 (279)
T ss_pred             EEecCCCCHHHHHHHHHHHHHHHhcCCCCCceEEEEEcCC-CcEEEEEcCCCCCHHHHHhhccCCCCHHHHHHHHHHHHH
Confidence            4444444444567788999999999999999999999754 57899999999999999865321     46788999999


Q ss_pred             HhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHH
Q 044022           77 SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSF  156 (241)
Q Consensus        77 ~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~  156 (241)
                      ||.|||   +.+++|+||||+||+++.++.++|+|||++................++..|+|||...+..++.++|||||
T Consensus       121 ~L~~lH---~~~iiH~dlkp~Nil~~~~~~~kL~dfG~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~sl  197 (279)
T cd05109         121 GMSYLE---EVRLVHRDLAARNVLVKSPNHVKITDFGLARLLDIDETEYHADGGKVPIKWMALESILHRRFTHQSDVWSY  197 (279)
T ss_pred             HHHHHH---HCCeeccccccceEEEcCCCcEEECCCCceeecccccceeecCCCccchhhCCHHHhccCCCCchhHHHHH
Confidence            999999   99999999999999999999999999999886654322222222234667999999988889999999999


Q ss_pred             HHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCC
Q 044022          157 GAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPED  235 (241)
Q Consensus       157 G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~  235 (241)
                      |+++||+++ |..||.....          ...............     ..        ..+..+.+++.+||..||+.
T Consensus       198 G~~l~el~t~g~~p~~~~~~----------~~~~~~~~~~~~~~~-----~~--------~~~~~~~~li~~~l~~dp~~  254 (279)
T cd05109         198 GVTVWELMTFGAKPYDGIPA----------REIPDLLEKGERLPQ-----PP--------ICTIDVYMIMVKCWMIDSEC  254 (279)
T ss_pred             HHHHHHHHcCCCCCCCCCCH----------HHHHHHHHCCCcCCC-----Cc--------cCCHHHHHHHHHHcCCChhh
Confidence            999999998 8888854111          111111111111110     01        12357889999999999999


Q ss_pred             CCCCCC
Q 044022          236 RPTMVD  241 (241)
Q Consensus       236 Rpt~~e  241 (241)
                      |||+.|
T Consensus       255 Rp~~~~  260 (279)
T cd05109         255 RPRFRE  260 (279)
T ss_pred             CcCHHH
Confidence            999864

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=100.00  E-value=3.1e-36  Score=238.70  Aligned_cols=203  Identities=19%  Similarity=0.331  Sum_probs=158.5

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC--c---hHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP--L---PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~--~---~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ..+.|.+|+.++++++||||+++++++......+++|||+++++|.+++....  .   ..+.++.+++.||+|||   +
T Consensus        42 ~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~lH---~  118 (256)
T cd05113          42 SEDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIVTEYMSNGCLLNYLREHGKRFQPSQLLEMCKDVCEGMAYLE---S  118 (256)
T ss_pred             cHHHHHHHHHHHhcCCCCCeeeEEEEEccCCCcEEEEEcCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---h
Confidence            35679999999999999999999999998888999999999999999986532  1   46789999999999999   9


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh-
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA-  165 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~-  165 (241)
                      .+++|+||+|+||+++.++.++|+|||.+......... ......++..|+|||.+.+..++.++|+||||+++|+|++ 
T Consensus       119 ~~i~H~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~~-~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~~l~~~  197 (256)
T cd05113         119 KQFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEYT-SSVGSKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSL  197 (256)
T ss_pred             CCeeccccCcceEEEcCCCCEEECCCccceecCCCcee-ecCCCccChhhCCHHHHhcCcccchhHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999998765433211 1112234567999999988889999999999999999998 


Q ss_pred             cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          166 GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       166 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      |..||.....         .+..... ........+     .        ..+..+.+++.+||+.||++|||+.+
T Consensus       198 g~~p~~~~~~---------~~~~~~~-~~~~~~~~~-----~--------~~~~~~~~li~~cl~~~p~~Rp~~~~  250 (256)
T cd05113         198 GKMPYERFNN---------SETVEKV-SQGLRLYRP-----H--------LASEKVYAIMYSCWHEKAEERPTFQQ  250 (256)
T ss_pred             CCCCcCcCCH---------HHHHHHH-hcCCCCCCC-----C--------CCCHHHHHHHHHHcCCCcccCCCHHH
Confidence            9999854211         1111111 111110000     0        12357899999999999999999853

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=100.00  E-value=1.5e-36  Score=248.71  Aligned_cols=207  Identities=21%  Similarity=0.232  Sum_probs=159.2

Q ss_pred             cHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ..+.+.+|+.++.++ +||||+++++++...+..++||||+++|+|..++....    ..+..++.|++.||.|||   +
T Consensus        38 ~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~qi~~al~~lH---~  114 (327)
T cd05617          38 DIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEYVNGGDLMFHMQRQRKLPEEHARFYAAEICIALNFLH---E  114 (327)
T ss_pred             HHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            455688999999998 69999999999999999999999999999998875432    246788999999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhc
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      ++++||||||+|||++.++.++|+|||++........  ......|++.|+|||++.+..++.++||||||+++|+|++|
T Consensus       115 ~~ivHrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~ell~g  192 (327)
T cd05617         115 RGIIYRDLKLDNVLLDADGHIKLTDYGMCKEGLGPGD--TTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAG  192 (327)
T ss_pred             CCeeccCCCHHHEEEeCCCCEEEeccccceeccCCCC--ceecccCCcccCCHHHHCCCCCCchheeehhHHHHHHHHhC
Confidence            9999999999999999999999999999875322211  11335689999999999988999999999999999999999


Q ss_pred             CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          167 RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                      ..||.......   .....+...........      .+...        .+..+.+++.+||..||++|+++.
T Consensus       193 ~~pf~~~~~~~---~~~~~~~~~~~~~~~~~------~~p~~--------~~~~~~~li~~~L~~dP~~R~~~~  249 (327)
T cd05617         193 RSPFDIITDNP---DMNTEDYLFQVILEKPI------RIPRF--------LSVKASHVLKGFLNKDPKERLGCQ  249 (327)
T ss_pred             CCCCCccCCCc---ccccHHHHHHHHHhCCC------CCCCC--------CCHHHHHHHHHHhccCHHHcCCCC
Confidence            99996422211   11111112221111110      11111        124678999999999999999863

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=100.00  E-value=1e-36  Score=241.04  Aligned_cols=203  Identities=17%  Similarity=0.210  Sum_probs=160.7

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC------chHHHHHHHHHHHhchhhcC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP------LPRLKIASDIVNSLAYLHFG   84 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~------~~~~~~~~~i~~~l~~lh~~   84 (241)
                      ...+.+.+|+.+++.++|+||+++++.+..++..++++||+++++|.+++....      .....++.+++.|+.+||  
T Consensus        40 ~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH--  117 (255)
T cd08219          40 SAVEDSRKEAVLLAKMKHPNIVAFKESFEADGHLYIVMEYCDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIH--  117 (255)
T ss_pred             HHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEeeCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHh--
Confidence            456778899999999999999999999999999999999999999999875421      145788999999999999  


Q ss_pred             CCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHH
Q 044022           85 FPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        85 ~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~  164 (241)
                       +.+++|+||+|+||+++.++.++++|||.+.........  .....++..|+|||++.+..++.++|+||||+++|+|+
T Consensus       118 -~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~~~aPE~~~~~~~~~~~Dv~slG~i~~~l~  194 (255)
T cd08219         118 -EKRVLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSPGAY--ACTYVGTPYYVPPEIWENMPYNNKSDIWSLGCILYELC  194 (255)
T ss_pred             -hCCcccCCCCcceEEECCCCcEEEcccCcceeecccccc--cccccCCccccCHHHHccCCcCchhhhhhhchhheehh
Confidence             999999999999999999999999999998765443221  12345788899999998888999999999999999999


Q ss_pred             hcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          165 AGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       165 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +|..||....         ......... .+.....+     .        ..+..+.+++.+||+.||++|||+.|
T Consensus       195 ~g~~p~~~~~---------~~~~~~~~~-~~~~~~~~-----~--------~~~~~~~~li~~~l~~~P~~Rp~~~~  248 (255)
T cd08219         195 TLKHPFQANS---------WKNLILKVC-QGSYKPLP-----S--------HYSYELRSLIKQMFKRNPRSRPSATT  248 (255)
T ss_pred             hccCCCCCCC---------HHHHHHHHh-cCCCCCCC-----c--------ccCHHHHHHHHHHHhCCcccCCCHHH
Confidence            9999995411         111111111 11111111     1        12356889999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=100.00  E-value=1.3e-36  Score=244.80  Aligned_cols=204  Identities=20%  Similarity=0.315  Sum_probs=157.9

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC--------------chHHHHHHHHHHH
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP--------------LPRLKIASDIVNS   77 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~--------------~~~~~~~~~i~~~   77 (241)
                      ....+.+|+.+++.++||||+++++++......++||||+++|+|.+++....              .....++.+++.|
T Consensus        52 ~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  131 (288)
T cd05061          52 ERIEFLNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADG  131 (288)
T ss_pred             HHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHH
Confidence            34568899999999999999999999998889999999999999999986421              1346789999999


Q ss_pred             hchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHH
Q 044022           78 LAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFG  157 (241)
Q Consensus        78 l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G  157 (241)
                      |.|||   +++++||||||+||+++.++.++++|||++................++..|+|||.+.+..++.++|+||||
T Consensus       132 l~~lH---~~~i~H~dikp~nili~~~~~~~L~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~DvwslG  208 (288)
T cd05061         132 MAYLN---AKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFG  208 (288)
T ss_pred             HHHHH---hCCCcCCCCChheEEEcCCCcEEECcCCccccccccccccccCCCcccccccCHHHhccCCCChHhHHHHHH
Confidence            99999   999999999999999999999999999998755433222222233456779999999888899999999999


Q ss_pred             HHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCC
Q 044022          158 AFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDR  236 (241)
Q Consensus       158 ~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~R  236 (241)
                      +++|+|++ |..||....         ..+...... .+.....+     .        ..+..+.+++.+||+.||++|
T Consensus       209 ~~l~el~~~~~~p~~~~~---------~~~~~~~~~-~~~~~~~~-----~--------~~~~~~~~li~~~l~~~p~~R  265 (288)
T cd05061         209 VVLWEITSLAEQPYQGLS---------NEQVLKFVM-DGGYLDQP-----D--------NCPERVTDLMRMCWQFNPKMR  265 (288)
T ss_pred             HHHHHHHhCCCCCCCCCC---------HHHHHHHHH-cCCCCCCC-----C--------CCCHHHHHHHHHHcCCChhHC
Confidence            99999998 788885421         111111111 11111111     1        122578999999999999999


Q ss_pred             CCCCC
Q 044022          237 PTMVD  241 (241)
Q Consensus       237 pt~~e  241 (241)
                      ||+.|
T Consensus       266 ps~~~  270 (288)
T cd05061         266 PTFLE  270 (288)
T ss_pred             cCHHH
Confidence            99853

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=100.00  E-value=2.3e-36  Score=241.16  Aligned_cols=202  Identities=21%  Similarity=0.299  Sum_probs=155.6

Q ss_pred             ccHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC--------------------chHHH
Q 044022           11 HTYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP--------------------LPRLK   69 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~--------------------~~~~~   69 (241)
                      ...+.+.+|++++.++ +||||+++++++...+..+++|||+++++|.+++....                    .....
T Consensus        37 ~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  116 (270)
T cd05047          37 DDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLH  116 (270)
T ss_pred             HHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEEEeCCCCcHHHHHHhccccccccccccccCCcCCCCHHHHHH
Confidence            4456788999999999 89999999999999999999999999999999986421                    13578


Q ss_pred             HHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCc
Q 044022           70 IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNE  149 (241)
Q Consensus        70 ~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~  149 (241)
                      ++.+++.|++|||   +.+++|+||||+||+++.++.++++|||++.......   .......+..|+|||++....++.
T Consensus       117 ~~~~i~~al~~lH---~~~i~H~dikp~nili~~~~~~kl~dfgl~~~~~~~~---~~~~~~~~~~y~apE~~~~~~~~~  190 (270)
T cd05047         117 FAADVARGMDYLS---QKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYV---KKTMGRLPVRWMAIESLNYSVYTT  190 (270)
T ss_pred             HHHHHHHHHHHHH---HCCEeecccccceEEEcCCCeEEECCCCCccccchhh---hccCCCCccccCChHHHccCCCCc
Confidence            8999999999999   8999999999999999999999999999875322111   111122355799999998888999


Q ss_pred             chhhHHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHh
Q 044022          150 KSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLEC  228 (241)
Q Consensus       150 ~~Di~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c  228 (241)
                      ++|+||||+++|+|++ |..||....         ..+...... .......+     .        ..+..+.+++.+|
T Consensus       191 ~~Di~slG~il~el~~~g~~pf~~~~---------~~~~~~~~~-~~~~~~~~-----~--------~~~~~~~~li~~~  247 (270)
T cd05047         191 NSDVWSYGVLLWEIVSLGGTPYCGMT---------CAELYEKLP-QGYRLEKP-----L--------NCDDEVYDLMRQC  247 (270)
T ss_pred             hhhHHHHHHHHHHHHcCCCCCccccC---------HHHHHHHHh-CCCCCCCC-----C--------cCCHHHHHHHHHH
Confidence            9999999999999997 999985421         111111111 11000000     0        1225688999999


Q ss_pred             ccCCCCCCCCCCC
Q 044022          229 VNNSPEDRPTMVD  241 (241)
Q Consensus       229 l~~~p~~Rpt~~e  241 (241)
                      |..||.+|||++|
T Consensus       248 l~~~p~~Rps~~~  260 (270)
T cd05047         248 WREKPYERPSFAQ  260 (270)
T ss_pred             cccChhhCCCHHH
Confidence            9999999999864

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=100.00  E-value=1.8e-36  Score=246.23  Aligned_cols=154  Identities=23%  Similarity=0.303  Sum_probs=134.5

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCC-
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFP-   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~-   86 (241)
                      ...++.+|++++++++||||+++++++..++..++|+||+++++|.+++.....    ....++.+++.||.|||   + 
T Consensus        42 ~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ey~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH---~~  118 (308)
T cd06615          42 IRNQIIRELKVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPENILGKISIAVLRGLTYLR---EK  118 (308)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCEEEEEeeccCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hh
Confidence            456688999999999999999999999999999999999999999999865422    45688999999999999   5 


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhc
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      .+++|+||+|+||+++.++.++|+|||.+.......    .....++..|+|||.+.+..++.++|+||||+++|++++|
T Consensus       119 ~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~----~~~~~~~~~~~aPE~~~~~~~~~~~DiwslG~~l~~l~~g  194 (308)
T cd06615         119 HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM----ANSFVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIG  194 (308)
T ss_pred             CCEEECCCChHHEEEecCCcEEEccCCCcccccccc----cccCCCCcCccChhHhcCCCCCccchHHHHHHHHHHHHhC
Confidence            589999999999999999999999999886543321    1234678899999999888889999999999999999999


Q ss_pred             Cccccc
Q 044022          167 RIHIWD  172 (241)
Q Consensus       167 ~~p~~~  172 (241)
                      +.||..
T Consensus       195 ~~p~~~  200 (308)
T cd06615         195 RYPIPP  200 (308)
T ss_pred             CCCCCC
Confidence            999854

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=100.00  E-value=1.2e-36  Score=247.15  Aligned_cols=214  Identities=20%  Similarity=0.307  Sum_probs=160.9

Q ss_pred             cccccccccccHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----------------
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----------------   64 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----------------   64 (241)
                      |.+..+........+.+|+.+++.+ +|+||+++++++...+..++|+||+++++|.+++....                
T Consensus        56 K~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~  135 (307)
T cd05098          56 KMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEE  135 (307)
T ss_pred             EeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccc
Confidence            3443332333456788999999999 89999999999999999999999999999999986421                


Q ss_pred             ----chHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcc
Q 044022           65 ----LPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPE  140 (241)
Q Consensus        65 ----~~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE  140 (241)
                          ...+.++.+++.||+|||   +.+++|+||||+||+++.++.++|+|||.+................++..|+|||
T Consensus       136 ~l~~~~~~~~~~qi~~aL~~lH---~~gi~H~dlkp~Nill~~~~~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE  212 (307)
T cd05098         136 QLSFKDLVSCAYQVARGMEYLA---SKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPE  212 (307)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHH---HCCcccccccHHheEEcCCCcEEECCCcccccccccchhhccccCCCccceeChH
Confidence                135688999999999999   8999999999999999999999999999987554322111111122446799999


Q ss_pred             cccccCCCcchhhHHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHH
Q 044022          141 YISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLH  219 (241)
Q Consensus       141 ~~~~~~~~~~~Di~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (241)
                      ++.+..++.++|+||||+++|+|++ |..||....         ..+..... ........     ..        ..+.
T Consensus       213 ~~~~~~~~~~~DvwslG~~l~el~~~g~~p~~~~~---------~~~~~~~~-~~~~~~~~-----~~--------~~~~  269 (307)
T cd05098         213 ALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP---------VEELFKLL-KEGHRMDK-----PS--------NCTN  269 (307)
T ss_pred             HhccCCCCcHHHHHHHHHHHHHHHcCCCCCCCcCC---------HHHHHHHH-HcCCCCCC-----CC--------cCCH
Confidence            9988889999999999999999998 888884311         11222221 11111111     11        1235


Q ss_pred             HHHHHHHHhccCCCCCCCCCCC
Q 044022          220 ASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       220 ~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      .+.+++.+||..+|++|||+.|
T Consensus       270 ~~~~li~~~l~~~p~~Rps~~e  291 (307)
T cd05098         270 ELYMMMRDCWHAVPSQRPTFKQ  291 (307)
T ss_pred             HHHHHHHHHcccChhhCcCHHH
Confidence            7889999999999999999864

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=100.00  E-value=3.1e-36  Score=239.13  Aligned_cols=203  Identities=18%  Similarity=0.318  Sum_probs=159.2

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC------chHHHHHHHHHHHhchhhcCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP------LPRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~------~~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ..+.+.+|+.++++++|+||+++++++...+..++++||+++++|.+++....      ...+.++.+++.||+|||   
T Consensus        44 ~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~LH---  120 (261)
T cd05072          44 SVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIE---  120 (261)
T ss_pred             hHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEEecCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            45688999999999999999999999999999999999999999999986532      145778999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~  165 (241)
                      +.+++|+||+|+||+++.++.++|+|||.+.......... .....++..|+|||++....++.++|+||||+++|+|++
T Consensus       121 ~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~t  199 (261)
T cd05072         121 RKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTA-REGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVT  199 (261)
T ss_pred             HCCeeccccchhhEEecCCCcEEECCCccceecCCCceec-cCCCccceecCCHHHhccCCCChhhhhhhhHHHHHHHHc
Confidence            8999999999999999999999999999998765432211 122235667999999988889999999999999999998


Q ss_pred             -cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          166 -GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       166 -g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                       |..||.....         .+...... ...    ..+. ..        ..+..+.+++.+||..+|++|||+++
T Consensus       200 ~g~~p~~~~~~---------~~~~~~~~-~~~----~~~~-~~--------~~~~~~~~li~~~l~~~p~~Rp~~~~  253 (261)
T cd05072         200 YGKIPYPGMSN---------SDVMSALQ-RGY----RMPR-ME--------NCPDELYDIMKTCWKEKAEERPTFDY  253 (261)
T ss_pred             cCCCCCCCCCH---------HHHHHHHH-cCC----CCCC-CC--------CCCHHHHHHHHHHccCCcccCcCHHH
Confidence             9999854211         11111111 111    0111 01        12256889999999999999999864

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=100.00  E-value=1.7e-37  Score=254.54  Aligned_cols=205  Identities=16%  Similarity=0.165  Sum_probs=158.6

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC--c---hHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP--L---PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~--~---~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ....+.+|+.+++.++|+||+++++++...+..++||||+++|+|.+++....  .   ....++.|++.||.|||   +
T Consensus        44 ~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~lH---~  120 (330)
T cd05601          44 TVSFFEEERDILSISNSPWIPQLQYAFQDKDNLYLVMEYQPGGDLLSLLNRYEDQFDEDMAQFYLAELVLAIHSVH---Q  120 (330)
T ss_pred             HHHHHHHHHHHHHhCCCCCCcceeeEEecCCeEEEEECCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            45668899999999999999999999999999999999999999999986641  1   35678899999999999   9


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccc------ccCCCcchhhHHHHHHH
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYIS------ICVLNEKSNVFSFGAFL  160 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~------~~~~~~~~Di~s~G~~~  160 (241)
                      .+++||||||+||+++.++.++|+|||.+......... ......+++.|+|||++.      ...++.++||||||+++
T Consensus       121 ~~i~H~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il  199 (330)
T cd05601         121 MGYVHRDIKPENVLIDRTGHIKLADFGSAARLTANKMV-NSKLPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIA  199 (330)
T ss_pred             CCeEcccCchHheEECCCCCEEeccCCCCeECCCCCce-eeecccCCccccCHHHhccccccccCCCCCcceeeccccee
Confidence            99999999999999999999999999999766543322 223346899999999986      45677899999999999


Q ss_pred             HHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          161 FELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       161 ~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                      |+|++|+.||.....         .+..............+..   .        ..+..+.+++..||. +|++|||++
T Consensus       200 ~el~~g~~Pf~~~~~---------~~~~~~i~~~~~~~~~~~~---~--------~~~~~~~~li~~ll~-~p~~R~t~~  258 (330)
T cd05601         200 YEMIYGRSPFHEGTS---------AKTYNNIMNFQRFLKFPED---P--------KVSSDFLDLIQSLLC-GQKERLGYE  258 (330)
T ss_pred             eeeccCCCCCCCCCH---------HHHHHHHHcCCCccCCCCC---C--------CCCHHHHHHHHHHcc-ChhhCCCHH
Confidence            999999999954211         1111111111111111110   0        122568899999998 999999985


Q ss_pred             C
Q 044022          241 D  241 (241)
Q Consensus       241 e  241 (241)
                      +
T Consensus       259 ~  259 (330)
T cd05601         259 G  259 (330)
T ss_pred             H
Confidence            3

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=100.00  E-value=1.6e-36  Score=241.39  Aligned_cols=206  Identities=20%  Similarity=0.301  Sum_probs=160.3

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC-----C---chHHHHHHHHHHHhchhh
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA-----P---LPRLKIASDIVNSLAYLH   82 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~-----~---~~~~~~~~~i~~~l~~lh   82 (241)
                      .....+.+|+++++.++||||+++++++...+..++++||+++++|.+++...     .   .....++.+++.||.|||
T Consensus        44 ~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH  123 (267)
T cd08228          44 KARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNELNIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMH  123 (267)
T ss_pred             HHHHHHHHHHHHHHhCCCcceeeeeeeEEECCeEEEEEEecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHh
Confidence            34567889999999999999999999999999999999999999999887421     1   145788999999999999


Q ss_pred             cCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHH
Q 044022           83 FGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFE  162 (241)
Q Consensus        83 ~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~  162 (241)
                         +.+++|+||+|+||+++.++.++|+|||.+.........  .....++..|+|||.+.+..++.++|+||||+++|+
T Consensus       124 ---~~~i~H~dl~~~nil~~~~~~~~l~d~g~~~~~~~~~~~--~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~e  198 (267)
T cd08228         124 ---SRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTA--AHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYE  198 (267)
T ss_pred             ---hCCeeCCCCCHHHEEEcCCCCEEECccccceeccchhHH--HhcCCCCccccChhhhccCCCCchhhHHHHHHHHHH
Confidence               999999999999999999999999999998765433221  123457888999999988888999999999999999


Q ss_pred             HHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          163 LLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       163 ~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      |++|+.||.....       ...+...... ........            ....+..+.+++.+||..+|++|||+.|
T Consensus       199 l~~g~~p~~~~~~-------~~~~~~~~~~-~~~~~~~~------------~~~~~~~~~~li~~cl~~~p~~Rp~~~~  257 (267)
T cd08228         199 MAALQSPFYGDKM-------NLFSLCQKIE-QCDYPPLP------------TEHYSEKLRELVSMCIYPDPDQRPDIGY  257 (267)
T ss_pred             HhcCCCCCccccc-------cHHHHHHHHh-cCCCCCCC------------hhhcCHHHHHHHHHHCCCCcccCcCHHH
Confidence            9999999854211       1111111111 11111100            1133467899999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=100.00  E-value=3e-36  Score=246.63  Aligned_cols=200  Identities=21%  Similarity=0.246  Sum_probs=156.8

Q ss_pred             ccHHHHHHHHHHHHhcCC-CcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCC
Q 044022           11 HTYGSCINNITYAAQMSH-NHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h-~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ...+.+..|++++..+.| ++|+++++++...+..++||||+++|+|.+++....    .....++.|++.||.|||   
T Consensus        42 ~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~g~L~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---  118 (324)
T cd05587          42 DDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQVGKFKEPHAVFYAAEIAIGLFFLH---  118 (324)
T ss_pred             hHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEEEEcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            345678899999999976 468889999998899999999999999999886542    246778999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~  165 (241)
                      +++++||||||+|||++.++.++|+|||++........  ......|++.|+|||++.+..++.++||||+|+++|+|++
T Consensus       119 ~~~ivH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~ellt  196 (324)
T cd05587         119 SKGIIYRDLKLDNVMLDAEGHIKIADFGMCKENIFGGK--TTRTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLA  196 (324)
T ss_pred             HCCeEecCCCHHHeEEcCCCCEEEeecCcceecCCCCC--ceeeecCCccccChhhhcCCCCCcccchhhhHHHHHHHHh
Confidence            89999999999999999999999999999865322211  1123468999999999998889999999999999999999


Q ss_pred             cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCC
Q 044022          166 GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM  239 (241)
Q Consensus       166 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~  239 (241)
                      |+.||....         ..+.........       .....        ..+..+.+++.+||..||++|+++
T Consensus       197 G~~pf~~~~---------~~~~~~~i~~~~-------~~~~~--------~~~~~~~~li~~~l~~~P~~R~~~  246 (324)
T cd05587         197 GQPPFDGED---------EDELFQSIMEHN-------VSYPK--------SLSKEAVSICKGLLTKHPAKRLGC  246 (324)
T ss_pred             CCCCCCCCC---------HHHHHHHHHcCC-------CCCCC--------CCCHHHHHHHHHHhhcCHHHcCCC
Confidence            999995421         111222221111       00111        122568899999999999999986

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=2.2e-36  Score=239.50  Aligned_cols=213  Identities=23%  Similarity=0.296  Sum_probs=160.8

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHH
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNS   77 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~   77 (241)
                      |.+..+......+.+.+|+++++++.|+|++++++++. ....++|+||+.+++|.+++.....    .+..++.+++.|
T Consensus        29 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~  107 (257)
T cd05060          29 KTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVCK-GEPLMLVMELAPLGPLLKYLKKRREIPVSDLKELAHQVAMG  107 (257)
T ss_pred             EecccccchHHHHHHHHHHHHHHhcCCCCeeeEEEEEc-CCceEEEEEeCCCCcHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence            34433333335667899999999999999999999875 4567999999999999999976542    467899999999


Q ss_pred             hchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCccee-ecccccCCCccCcccccccCCCcchhhHHH
Q 044022           78 LAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHIT-TDRVIGTRGYSAPEYISICVLNEKSNVFSF  156 (241)
Q Consensus        78 l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~-~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~  156 (241)
                      ++|||   ..+++|+||||+||+++.++.++|+|||.+........... .....++..|+|||.+.+..++.++|||||
T Consensus       108 l~~lh---~~~i~H~di~p~nili~~~~~~kl~df~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~sl  184 (257)
T cd05060         108 MAYLE---SKHFVHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDYYRATTAGRWPLKWYAPECINYGKFSSKSDVWSY  184 (257)
T ss_pred             HHHHh---hcCeeccCcccceEEEcCCCcEEeccccccceeecCCcccccccCccccccccCHHHhcCCCCCccchHHHH
Confidence            99999   89999999999999999999999999999876644332211 111223467999999988889999999999


Q ss_pred             HHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCC
Q 044022          157 GAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPED  235 (241)
Q Consensus       157 G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~  235 (241)
                      |+++|++++ |..||.....         .+...... .......     ..        ..+..+.+++.+||..+|++
T Consensus       185 G~~l~~~~~~g~~p~~~~~~---------~~~~~~~~-~~~~~~~-----~~--------~~~~~l~~li~~cl~~~p~~  241 (257)
T cd05060         185 GVTLWEAFSYGAKPYGEMKG---------AEVIAMLE-SGERLPR-----PE--------ECPQEIYSIMLSCWKYRPED  241 (257)
T ss_pred             HHHHHHHHcCCCCCcccCCH---------HHHHHHHH-cCCcCCC-----CC--------CCCHHHHHHHHHHhcCChhh
Confidence            999999998 9999854211         11111111 1111111     11        22357889999999999999


Q ss_pred             CCCCCC
Q 044022          236 RPTMVD  241 (241)
Q Consensus       236 Rpt~~e  241 (241)
                      |||+.|
T Consensus       242 Rp~~~~  247 (257)
T cd05060         242 RPTFSE  247 (257)
T ss_pred             CcCHHH
Confidence            999853

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.8e-36  Score=248.63  Aligned_cols=210  Identities=20%  Similarity=0.304  Sum_probs=165.8

Q ss_pred             ccccccHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc-----hHHHHHHHHHHHhch
Q 044022            7 EYHRHTYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL-----PRLKIASDIVNSLAY   80 (241)
Q Consensus         7 ~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-----~~~~~~~~i~~~l~~   80 (241)
                      ..+.+..+.|.+|+.+|.+| .|.+|+.+++|-..++.+|||||+=+ .+|...|+....     ....++.|++.++.+
T Consensus       397 ~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~lYmvmE~Gd-~DL~kiL~k~~~~~~~~~lk~ywkqML~aV~~  475 (677)
T KOG0596|consen  397 EADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDGYLYMVMECGD-IDLNKILKKKKSIDPDWFLKFYWKQMLLAVKT  475 (677)
T ss_pred             hcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCceEEEEeeccc-ccHHHHHHhccCCCchHHHHHHHHHHHHHHHH
Confidence            34446788899999999999 58999999999999999999999875 699999876532     356789999999999


Q ss_pred             hhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc-----------CCCc
Q 044022           81 LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-----------VLNE  149 (241)
Q Consensus        81 lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-----------~~~~  149 (241)
                      .|   ..||||.||||.|+|+- .|.+||+|||++..+..+.+.....+.+||+-||+||.+...           ..+.
T Consensus       476 IH---~~gIVHSDLKPANFLlV-kG~LKLIDFGIA~aI~~DTTsI~kdsQvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r  551 (677)
T KOG0596|consen  476 IH---QHGIVHSDLKPANFLLV-KGRLKLIDFGIANAIQPDTTSIVKDSQVGTVNYMSPEALTDMSSSRENGKSKIKISR  551 (677)
T ss_pred             HH---HhceeecCCCcccEEEE-eeeEEeeeechhcccCccccceeeccccCcccccCHHHHhhccccccCCCcceeecC
Confidence            99   99999999999999986 578999999999999988888888889999999999999643           2467


Q ss_pred             chhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhc
Q 044022          150 KSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECV  229 (241)
Q Consensus       150 ~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl  229 (241)
                      +|||||+|||+|+|+.|+.||.+..          .-+.+       +..+.++.-.-.++....   ...+.++|+.||
T Consensus       552 ~SDvWSLGCILYqMvYgktPf~~~~----------n~~aK-------l~aI~~P~~~Iefp~~~~---~~~li~~mK~CL  611 (677)
T KOG0596|consen  552 KSDVWSLGCILYQMVYGKTPFGQII----------NQIAK-------LHAITDPNHEIEFPDIPE---NDELIDVMKCCL  611 (677)
T ss_pred             ccchhhhhhHHHHHHhcCCchHHHH----------HHHHH-------HHhhcCCCccccccCCCC---chHHHHHHHHHH
Confidence            8999999999999999999996611          11111       112222211101111100   023889999999


Q ss_pred             cCCCCCCCCCCC
Q 044022          230 NNSPEDRPTMVD  241 (241)
Q Consensus       230 ~~~p~~Rpt~~e  241 (241)
                      .+||++|||+.|
T Consensus       612 ~rdPkkR~si~e  623 (677)
T KOG0596|consen  612 ARDPKKRWSIPE  623 (677)
T ss_pred             hcCcccCCCcHH
Confidence            999999999864

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=100.00  E-value=2.1e-36  Score=247.84  Aligned_cols=158  Identities=18%  Similarity=0.222  Sum_probs=130.5

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC------chHHHHHHHHHHHhchhhcCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP------LPRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~------~~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ..+.+.+|+++++.++||||++++++|..++..++|+||+++|+|.+++....      .....++.|++.||+|||   
T Consensus        42 ~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH---  118 (327)
T cd08227          42 MVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFMAYGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIH---  118 (327)
T ss_pred             HHHHHHHHHHHHHhcCCCCeeeEEEEEEECCEEEEEEeccCCCcHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            34567789999999999999999999999999999999999999999985431      246788999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcce-----eecccccCCCccCcccccc--cCCCcchhhHHHHH
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHI-----TTDRVIGTRGYSAPEYISI--CVLNEKSNVFSFGA  158 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~-----~~~~~~~~~~~~aPE~~~~--~~~~~~~Di~s~G~  158 (241)
                      +.+++||||||+||+++.++.++++||+............     ......++..|+|||++.+  ..++.++||||||+
T Consensus       119 ~~~iiH~dlkp~Nil~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~  198 (327)
T cd08227         119 HMGYVHRSVKASHILISVDGKVYLSGLRSNLSMINHGQRLRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGI  198 (327)
T ss_pred             HCCEecCCCChhhEEEecCCcEEEcccchhhccccccccccccccccccccceecccChHHhhcccCCCCchhhHHHHHH
Confidence            8999999999999999999999999998654332211100     0112345677999999976  35889999999999


Q ss_pred             HHHHHHhcCccccc
Q 044022          159 FLFELLAGRIHIWD  172 (241)
Q Consensus       159 ~~~~~~~g~~p~~~  172 (241)
                      ++|++++|+.||..
T Consensus       199 il~el~~g~~pf~~  212 (327)
T cd08227         199 TACELANGHVPFKD  212 (327)
T ss_pred             HHHHHHHCCCCCCC
Confidence            99999999999965

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.3e-37  Score=255.41  Aligned_cols=203  Identities=15%  Similarity=0.188  Sum_probs=156.6

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ....+.+|+++++.++||||+++++++...+..++||||+++|+|.+++.....    ....++.|++.||.|||   +.
T Consensus        44 ~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~g~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH---~~  120 (364)
T cd05599          44 QVAHVRAERDILAEADNPWVVKLYYSFQDENYLYLIMEYLPGGDMMTLLMKKDTFTEEETRFYIAETILAIDSIH---KL  120 (364)
T ss_pred             HHHHHHHHHHHHHhCCCCCCcceEEEEEcCCeEEEEECCCCCcHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HC
Confidence            445678899999999999999999999999999999999999999999865422    46778999999999999   99


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcc------------------------------------eeecccc
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH------------------------------------ITTDRVI  131 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~------------------------------------~~~~~~~  131 (241)
                      +++||||||+|||++.++.++|+|||++.........                                    ......+
T Consensus       121 ~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (364)
T cd05599         121 GYIHRDIKPDNLLLDAKGHIKLSDFGLCTGLKKSHRTEFYRILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYSTV  200 (364)
T ss_pred             CeEeccCCHHHeEECCCCCEEEeecccceeccccccccccccccccccccccccccccccccccccchhhcccccccccc
Confidence            9999999999999999999999999998654321100                                    0011246


Q ss_pred             cCCCccCcccccccCCCcchhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCc
Q 044022          132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPC  211 (241)
Q Consensus       132 ~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (241)
                      ||+.|+|||++....++.++|||||||++|+|++|..||....         ..+..............+.     ..  
T Consensus       201 gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~G~~Pf~~~~---------~~~~~~~i~~~~~~~~~~~-----~~--  264 (364)
T cd05599         201 GTPDYIAPEVFLQTGYNKECDWWSLGVIMYEMLVGYPPFCSDN---------PQETYRKIINWKETLQFPD-----EV--  264 (364)
T ss_pred             cCccccCHHHHcCCCCCCeeeeecchhHHHHhhcCCCCCCCCC---------HHHHHHHHHcCCCccCCCC-----CC--
Confidence            8999999999998889999999999999999999999996521         1111111111111011111     00  


Q ss_pred             hhHHHHHHHHHHHHHHhccCCCCCCCC
Q 044022          212 IEKEQQLHASAQLTLECVNNSPEDRPT  238 (241)
Q Consensus       212 ~~~~~~~~~~~~l~~~cl~~~p~~Rpt  238 (241)
                          ..++.+.+++.+|+. +|.+|++
T Consensus       265 ----~~s~~~~~li~~ll~-~p~~R~~  286 (364)
T cd05599         265 ----PLSPEAKDLIKRLCC-EAERRLG  286 (364)
T ss_pred             ----CCCHHHHHHHHHHcc-CHhhcCC
Confidence                123567899999996 9999998

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.4e-37  Score=255.57  Aligned_cols=206  Identities=19%  Similarity=0.240  Sum_probs=160.5

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      .....+.+|++++..++|+||+++++++...+..++||||+++++|.+++.....    ....++.|++.||.|||   +
T Consensus        43 ~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH---~  119 (350)
T cd05573          43 NQIAHVRAERDILADADSPWIVKLYYSFQDEEHLYLVMEYMPGGDLMNLLIRKDVFPEETARFYIAELVLALDSVH---K  119 (350)
T ss_pred             cHHHHHHHHHHHHHhcCCCCccchhhheecCCeEEEEEcCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            4456788999999999999999999999999999999999999999999866522    46678999999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCC---------------------------cceeecccccCCCccCc
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGE---------------------------THITTDRVIGTRGYSAP  139 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~aP  139 (241)
                      .+++||||||+||+++.++.++|+|||.+.......                           .........|++.|+||
T Consensus       120 ~giiH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aP  199 (350)
T cd05573         120 LGFIHRDIKPDNILIDADGHIKLADFGLCKKMNKAKDREYYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAP  199 (350)
T ss_pred             CCeeccCCCHHHeEECCCCCEEeecCCCCccCcccCcccccccccccccccccccccccccccccccccccccCccccCH
Confidence            999999999999999999999999999987654332                           00112335689999999


Q ss_pred             ccccccCCCcchhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHH
Q 044022          140 EYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLH  219 (241)
Q Consensus       140 E~~~~~~~~~~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (241)
                      |++.+..++.++|||||||++|+|++|+.||....         ..+..............+..   .        ..++
T Consensus       200 E~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~---------~~~~~~~i~~~~~~~~~p~~---~--------~~~~  259 (350)
T cd05573         200 EVLRGTPYGLECDWWSLGVILYEMLYGFPPFYSDT---------LQETYNKIINWKESLRFPPD---P--------PVSP  259 (350)
T ss_pred             HHHcCCCCCCceeeEecchhhhhhccCCCCCCCCC---------HHHHHHHHhccCCcccCCCC---C--------CCCH
Confidence            99999899999999999999999999999996521         11111111110000011100   0        1236


Q ss_pred             HHHHHHHHhccCCCCCCCC-CC
Q 044022          220 ASAQLTLECVNNSPEDRPT-MV  240 (241)
Q Consensus       220 ~~~~l~~~cl~~~p~~Rpt-~~  240 (241)
                      .+.+++.+||. ||.+||+ ++
T Consensus       260 ~~~~li~~ll~-dp~~R~~s~~  280 (350)
T cd05573         260 EAIDLICRLLC-DPEDRLGSFE  280 (350)
T ss_pred             HHHHHHHHHcc-ChhhcCCCHH
Confidence            78899999997 9999999 64

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=100.00  E-value=1e-36  Score=250.17  Aligned_cols=205  Identities=20%  Similarity=0.163  Sum_probs=156.1

Q ss_pred             cHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ..+.+.+|+++++++ +|+||+++++++...+..++||||+++|+|.+++....    .....++.||+.||.|||   +
T Consensus        47 ~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH---~  123 (332)
T cd05614          47 TVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKLHLILDYVSGGEMFTHLYQRDNFSEDEVRFYSGEIILALEHLH---K  123 (332)
T ss_pred             HHHHHHHHHHHHHhccCCCCcccEEEEEecCCEEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            345678899999999 58999999999999999999999999999999886542    245678889999999999   9


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc-CCCcchhhHHHHHHHHHHHh
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-VLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~~~~~~~  165 (241)
                      ++++||||||+|||++.++.++|+|||++.......... .....|+..|+|||++.+. .++.++||||||+++|+|++
T Consensus       124 ~~ivHrDlkp~Nili~~~~~~kl~DfG~~~~~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ellt  202 (332)
T cd05614         124 LGIVYRDIKLENILLDSEGHVVLTDFGLSKEFLSEEKER-TYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLT  202 (332)
T ss_pred             CCcEecCCCHHHeEECCCCCEEEeeCcCCccccccCCCc-cccccCCccccCHHHhcCCCCCCCccccccchhhhhhhhc
Confidence            999999999999999999999999999987543322111 1234689999999998765 47889999999999999999


Q ss_pred             cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          166 GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       166 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                      |+.||......     ............ .      .+.+..        ..+..+.+++.+||+.||++||++.
T Consensus       203 g~~pf~~~~~~-----~~~~~~~~~~~~-~------~~~~~~--------~~~~~~~~li~~~l~~dp~~R~~~~  257 (332)
T cd05614         203 GASPFTLEGER-----NTQSEVSRRILK-C------DPPFPS--------FIGPEAQDLLHKLLRKDPKKRLGAG  257 (332)
T ss_pred             CCCCCCCCCCC-----CCHHHHHHHHhc-C------CCCCCC--------CCCHHHHHHHHHHcCCCHHHcCCCC
Confidence            99999542111     011111111111 0      111111        1225688999999999999999653

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=100.00  E-value=4.3e-36  Score=240.43  Aligned_cols=212  Identities=21%  Similarity=0.305  Sum_probs=165.6

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc---hHHHHHHHHHHHh
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL---PRLKIASDIVNSL   78 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~i~~~l   78 (241)
                      |.+...........+.+|+.+++++.|+||+++++.+...+..++||||+++++|.+++.....   ....++.+++.|+
T Consensus        35 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~l~~~~~~~~~~~l~~~l  114 (277)
T cd06640          35 KIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGTKLWIIMEYLGGGSALDLLRAGPFDEFQIATMLKEILKGL  114 (277)
T ss_pred             EEEeccccHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEecCCCCcHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            4443333334567889999999999999999999999999999999999999999999876543   4567889999999


Q ss_pred             chhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHH
Q 044022           79 AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGA  158 (241)
Q Consensus        79 ~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~  158 (241)
                      .|||   +.+++|+||+|+||+++.++.++++|||.+.........  .....++..|+|||++.+..++.++|+||||+
T Consensus       115 ~~lh---~~~ivH~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~y~apE~~~~~~~~~~~Dv~slG~  189 (277)
T cd06640         115 DYLH---SEKKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIK--RNTFVGTPFWMAPEVIQQSAYDSKADIWSLGI  189 (277)
T ss_pred             HHHH---hCCccCcCCChhhEEEcCCCCEEEcccccceeccCCccc--cccccCcccccCHhHhccCCCccHHHHHHHHH
Confidence            9999   899999999999999999999999999998766443221  12345778899999998888999999999999


Q ss_pred             HHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCC
Q 044022          159 FLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT  238 (241)
Q Consensus       159 ~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt  238 (241)
                      ++|+|++|..||......         ...... ...     ..+.+        ....+..+.+++.+||..+|++|||
T Consensus       190 il~el~tg~~p~~~~~~~---------~~~~~~-~~~-----~~~~~--------~~~~~~~~~~li~~~l~~~p~~Rp~  246 (277)
T cd06640         190 TAIELAKGEPPNSDMHPM---------RVLFLI-PKN-----NPPTL--------TGEFSKPFKEFIDACLNKDPSFRPT  246 (277)
T ss_pred             HHHHHHHCCCCCCCcChH---------hHhhhh-hcC-----CCCCC--------chhhhHHHHHHHHHHcccCcccCcC
Confidence            999999999998642111         001000 000     00111        1234567889999999999999999


Q ss_pred             CCC
Q 044022          239 MVD  241 (241)
Q Consensus       239 ~~e  241 (241)
                      ++|
T Consensus       247 ~~~  249 (277)
T cd06640         247 AKE  249 (277)
T ss_pred             HHH
Confidence            864

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=100.00  E-value=1.8e-36  Score=242.58  Aligned_cols=212  Identities=23%  Similarity=0.306  Sum_probs=164.5

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc---hHHHHHHHHHHHh
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL---PRLKIASDIVNSL   78 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~i~~~l   78 (241)
                      |.+.........+.+.+|++++++++||||+++++++...+..++|+||+++++|.+++.....   ....++.+++.|+
T Consensus        35 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~i~~~l  114 (277)
T cd06642          35 KIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSYLKGTKLWIIMEYLGGGSALDLLKPGPLEETYIATILREILKGL  114 (277)
T ss_pred             EEeccccchHHHHHHHHHHHHHHcCCCCccHhhhcccccCCceEEEEEccCCCcHHHHhhcCCCCHHHHHHHHHHHHHHH
Confidence            4444333334456789999999999999999999999999999999999999999998876533   4567899999999


Q ss_pred             chhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHH
Q 044022           79 AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGA  158 (241)
Q Consensus        79 ~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~  158 (241)
                      .|||   +.+++|+||+|+||+++.++.++++|||.+........  ......++..|+|||++.+..++.++|+||||+
T Consensus       115 ~~lH---~~~ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~  189 (277)
T cd06642         115 DYLH---SERKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQI--KRNTFVGTPFWMAPEVIKQSAYDFKADIWSLGI  189 (277)
T ss_pred             HHHh---cCCeeccCCChheEEEeCCCCEEEccccccccccCcch--hhhcccCcccccCHHHhCcCCCchhhhHHHHHH
Confidence            9999   89999999999999999999999999999876543221  112235778899999999888899999999999


Q ss_pred             HHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCC
Q 044022          159 FLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT  238 (241)
Q Consensus       159 ~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt  238 (241)
                      ++|++++|+.|+......         ..... ....     ..+.+..        ..+..+.+++.+||..+|++|||
T Consensus       190 il~el~tg~~p~~~~~~~---------~~~~~-~~~~-----~~~~~~~--------~~~~~~~~li~~~l~~~p~~Rp~  246 (277)
T cd06642         190 TAIELAKGEPPNSDLHPM---------RVLFL-IPKN-----SPPTLEG--------QYSKPFKEFVEACLNKDPRFRPT  246 (277)
T ss_pred             HHHHHHhCCCCCcccchh---------hHHhh-hhcC-----CCCCCCc--------ccCHHHHHHHHHHccCCcccCcC
Confidence            999999999998542111         00000 0001     0111111        23356889999999999999999


Q ss_pred             CCC
Q 044022          239 MVD  241 (241)
Q Consensus       239 ~~e  241 (241)
                      +.|
T Consensus       247 ~~~  249 (277)
T cd06642         247 AKE  249 (277)
T ss_pred             HHH
Confidence            854

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=100.00  E-value=2.5e-36  Score=240.95  Aligned_cols=204  Identities=22%  Similarity=0.347  Sum_probs=156.9

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCc------ceEEEEecCCCCHHHhhcCC-------Cc---hHHHHHHHHH
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPI------PILVFQSVEYGTLRDCIFGA-------PL---PRLKIASDIV   75 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~------~~lv~e~~~~~sL~~~l~~~-------~~---~~~~~~~~i~   75 (241)
                      ....+.+|++.++.++|+||+++++++.....      .++++||+++++|..++...       ..   ....++.+++
T Consensus        44 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~  123 (273)
T cd05035          44 EIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIA  123 (273)
T ss_pred             HHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccCcccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHH
Confidence            45678999999999999999999998876543      79999999999999887432       11   3567899999


Q ss_pred             HHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHH
Q 044022           76 NSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFS  155 (241)
Q Consensus        76 ~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s  155 (241)
                      .||.|||   +.+++|+||||+||+++.++.++|+|||.+.................+..|+|||++.+..++.++||||
T Consensus       124 ~aL~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~S  200 (273)
T cd05035         124 LGMEYLS---NRNFIHRDLAARNCMLREDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWA  200 (273)
T ss_pred             HHHHHHH---hCCeeccccchheEEECCCCeEEECCccceeeccccccccccccccCCccccCHhhcccCCCCcccchHH
Confidence            9999999   8999999999999999999999999999988665433222222233467899999998888999999999


Q ss_pred             HHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCC
Q 044022          156 FGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPE  234 (241)
Q Consensus       156 ~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~  234 (241)
                      ||+++|+|++ |..||.....         .+...... .+.....+     .        ..+..+.+++.+||+.||+
T Consensus       201 lG~il~el~~~g~~p~~~~~~---------~~~~~~~~-~~~~~~~~-----~--------~~~~~~~~li~~~l~~~p~  257 (273)
T cd05035         201 FGVTMWEIATRGQTPYPGVEN---------HEIYDYLR-HGNRLKQP-----E--------DCLDELYDLMYSCWRADPK  257 (273)
T ss_pred             HHHHHHHHHhCCCCCCCCCCH---------HHHHHHHH-cCCCCCCC-----c--------CCCHHHHHHHHHHcCCChh
Confidence            9999999999 8888854211         11222211 11111111     1        2235789999999999999


Q ss_pred             CCCCCCC
Q 044022          235 DRPTMVD  241 (241)
Q Consensus       235 ~Rpt~~e  241 (241)
                      +|||+.|
T Consensus       258 ~Rp~~~e  264 (273)
T cd05035         258 DRPTFTK  264 (273)
T ss_pred             hCcCHHH
Confidence            9999854

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=100.00  E-value=8.7e-37  Score=254.96  Aligned_cols=159  Identities=17%  Similarity=0.220  Sum_probs=135.1

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      .....+.+|++++++++|+||+++++++...+..++||||+++|+|.+++.....    ....++.|++.||.|||   +
T Consensus        43 ~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~aL~~LH---~  119 (381)
T cd05626          43 NQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYIPGGDMMSLLIRMEVFPEVLARFYIAELTLAIESVH---K  119 (381)
T ss_pred             HHHHHHHHHHHHHHhcCCCCeeeeEEEEecCCEEEEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---h
Confidence            3456788999999999999999999999999999999999999999999865432    35567889999999999   9


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCc-------------------------------------------
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGET-------------------------------------------  123 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~-------------------------------------------  123 (241)
                      .+|+||||||+|||++.++.++|+|||++........                                           
T Consensus       120 ~givHrDlKp~Nili~~~~~~kL~DFGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (381)
T cd05626         120 MGFIHRDIKPDNILIDLDGHIKLTDFGLCTGFRWTHNSKYYQKGSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQ  199 (381)
T ss_pred             CCeeecCCcHHHEEECCCCCEEEeeCcCCcccccccccccccccccccccccCcccccccccccccccccchhhcccccc
Confidence            9999999999999999999999999998753210000                                           


Q ss_pred             --ceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcCccccc
Q 044022          124 --HITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       124 --~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~~p~~~  172 (241)
                        ........||+.|+|||++.+..++.++|||||||++|+|++|..||..
T Consensus       200 ~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~  250 (381)
T cd05626         200 HQRCLAHSLVGTPNYIAPEVLLRKGYTQLCDWWSVGVILFEMLVGQPPFLA  250 (381)
T ss_pred             ccccccccccCCccccCHHHHcCCCCCCccceeehhhHHHHHHhCCCCCcC
Confidence              0001234689999999999988899999999999999999999999965

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=100.00  E-value=1.7e-36  Score=247.79  Aligned_cols=199  Identities=20%  Similarity=0.233  Sum_probs=154.1

Q ss_pred             HHHHHHHHH-HHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCCC
Q 044022           13 YGSCINNIT-YAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        13 ~~~~~~e~~-~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ...+.+|.. +++.++||||+++++++...+..++||||+++++|...+....    .....++.||+.||.|||   +.
T Consensus        39 ~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~lH---~~  115 (321)
T cd05603          39 QNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDYVNGGELFFHLQRERCFLEPRARFYAAEVASAIGYLH---SL  115 (321)
T ss_pred             HHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEEcCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HC
Confidence            344556654 5788899999999999999999999999999999988876542    245678899999999999   89


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcC
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR  167 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~  167 (241)
                      +++||||||+||+++.++.+||+|||++........  ......|++.|+|||.+.+..++.++||||||+++|+|++|.
T Consensus       116 ~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~  193 (321)
T cd05603         116 NIIYRDLKPENILLDSQGHVVLTDFGLCKEGVEPEE--TTSTFCGTPEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGL  193 (321)
T ss_pred             CeEeccCCHHHeEECCCCCEEEccCCCCccCCCCCC--ccccccCCcccCCHHHhcCCCCCCcCcccccchhhhhhhcCC
Confidence            999999999999999999999999999865322211  123346899999999999888999999999999999999999


Q ss_pred             cccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          168 IHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       168 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                      .||....         .......... .. ..     +..        ..+..+.+++.+||+.||.+||++.
T Consensus       194 ~pf~~~~---------~~~~~~~i~~-~~-~~-----~~~--------~~~~~~~~li~~~l~~~p~~R~~~~  242 (321)
T cd05603         194 PPFYSRD---------VSQMYDNILH-KP-LQ-----LPG--------GKTVAACDLLVGLLHKDQRRRLGAK  242 (321)
T ss_pred             CCCCCCC---------HHHHHHHHhc-CC-CC-----CCC--------CCCHHHHHHHHHHccCCHhhcCCCC
Confidence            9996521         1111111111 10 00     111        1225688999999999999999874

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=100.00  E-value=1.9e-36  Score=247.91  Aligned_cols=199  Identities=21%  Similarity=0.235  Sum_probs=154.5

Q ss_pred             HHHHHHHH-HHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCCCC
Q 044022           14 GSCINNIT-YAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFPRP   88 (241)
Q Consensus        14 ~~~~~e~~-~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~~~   88 (241)
                      ..+..|.. +++.++||||+++++++...+..++||||+++++|.+++.....    ....++.||+.||.|||   +.+
T Consensus        40 ~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH---~~g  116 (325)
T cd05602          40 KHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYINGGELFYHLQRERCFLEPRARFYAAEIASALGYLH---SLN  116 (325)
T ss_pred             HHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCC
Confidence            34445544 56778999999999999999999999999999999998865432    45668899999999999   999


Q ss_pred             ceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcCc
Q 044022           89 IVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRI  168 (241)
Q Consensus        89 ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~~  168 (241)
                      ++||||||+|||++.++.++|+|||++........  ......|++.|+|||++.+..++.++||||||+++|+|++|..
T Consensus       117 iiHrDlkp~Nili~~~~~~kl~DfG~a~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~  194 (325)
T cd05602         117 IVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNG--TTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLP  194 (325)
T ss_pred             eEecCCCHHHeEECCCCCEEEccCCCCcccccCCC--CcccccCCccccCHHHHcCCCCCCccccccccHHHHHHhcCCC
Confidence            99999999999999999999999999865322211  1233468999999999998889999999999999999999999


Q ss_pred             ccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          169 HIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       169 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ||....         ..+........ ..      ...+.        .+..+.+++.+||+.||.+||++.+
T Consensus       195 pf~~~~---------~~~~~~~i~~~-~~------~~~~~--------~~~~~~~li~~~l~~~p~~R~~~~~  243 (325)
T cd05602         195 PFYSRN---------TAEMYDNILNK-PL------QLKPN--------ITNSARHLLEGLLQKDRTKRLGAKD  243 (325)
T ss_pred             CCCCCC---------HHHHHHHHHhC-Cc------CCCCC--------CCHHHHHHHHHHcccCHHHCCCCCC
Confidence            996421         11111221111 00      01111        2256889999999999999999863

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=5.6e-36  Score=238.00  Aligned_cols=197  Identities=25%  Similarity=0.370  Sum_probs=151.7

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHHHhchhhcCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~~l~~lh~~~   85 (241)
                      .....|.+|+.++.+++||||+++++++......++|+||+++++|..++....     .....++.||+.|++|||   
T Consensus        46 ~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---  122 (262)
T cd05077          46 DISLAFFETASMMRQVSHKHIVLLYGVCVRDVENIMVEEFVEFGPLDLFMHRKSDVLTTPWKFKVAKQLASALSYLE---  122 (262)
T ss_pred             hHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCEEEEecccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhh---
Confidence            344578889999999999999999999999889999999999999998876431     246789999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCC-------eEEeeccCceecCCCCcceeecccccCCCccCccccc-ccCCCcchhhHHHH
Q 044022           86 PRPIVLRNFKTQNILFNEENV-------AKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYIS-ICVLNEKSNVFSFG  157 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~-------~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~-~~~~~~~~Di~s~G  157 (241)
                      +.+++||||||+|||++.++.       ++++|||.+......      ....++..|+|||.+. +..++.++||||||
T Consensus       123 ~~~ivH~dlkp~Nill~~~~~~~~~~~~~~l~d~g~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG  196 (262)
T cd05077         123 DKDLVHGNVCTKNILLAREGIDGECGPFIKLSDPGIPITVLSR------QECVERIPWIAPECVEDSKNLSIAADKWSFG  196 (262)
T ss_pred             hCCeECCCCCcccEEEecCCccCCCCceeEeCCCCCCccccCc------ccccccccccChhhhcCCCCCCchhHHHHHH
Confidence            999999999999999987664       899999988654322      2235678899999886 45688999999999


Q ss_pred             HHHHHHH-hcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCC
Q 044022          158 AFLFELL-AGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDR  236 (241)
Q Consensus       158 ~~~~~~~-~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~R  236 (241)
                      +++|+|+ +|..||.....         .+.. .... .... ..     .        .....+.+++.+||+.||.+|
T Consensus       197 ~~l~el~~~~~~p~~~~~~---------~~~~-~~~~-~~~~-~~-----~--------~~~~~~~~li~~cl~~dp~~R  251 (262)
T cd05077         197 TTLWEICYNGEIPLKDKTL---------AEKE-RFYE-GQCM-LV-----T--------PSCKELADLMTHCMNYDPNQR  251 (262)
T ss_pred             HHHHHHHhCCCCCCCCcch---------hHHH-HHHh-cCcc-CC-----C--------CChHHHHHHHHHHcCCChhhC
Confidence            9999997 58888754111         1111 1111 1000 00     0        112468899999999999999


Q ss_pred             CCCCC
Q 044022          237 PTMVD  241 (241)
Q Consensus       237 pt~~e  241 (241)
                      ||+.|
T Consensus       252 p~~~~  256 (262)
T cd05077         252 PFFRA  256 (262)
T ss_pred             cCHHH
Confidence            99853

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=100.00  E-value=1.3e-36  Score=246.46  Aligned_cols=202  Identities=20%  Similarity=0.284  Sum_probs=155.6

Q ss_pred             ccHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC--------------------chHHH
Q 044022           11 HTYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP--------------------LPRLK   69 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~--------------------~~~~~   69 (241)
                      ....++.+|+.++.++ +|+||+++++++...+..++|+||+++++|.+++....                    ...+.
T Consensus        49 ~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  128 (303)
T cd05088          49 DDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLH  128 (303)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCcceEEEEECCCCCceEEEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHH
Confidence            3456788999999999 89999999999999999999999999999999986421                    13578


Q ss_pred             HHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCc
Q 044022           70 IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNE  149 (241)
Q Consensus        70 ~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~  149 (241)
                      ++.+++.|++|||   +++++||||||+||+++.++.++|+|||++.......   .......+..|+|||++.+..++.
T Consensus       129 ~~~qi~~al~~LH---~~gi~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~  202 (303)
T cd05088         129 FAADVARGMDYLS---QKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYV---KKTMGRLPVRWMAIESLNYSVYTT  202 (303)
T ss_pred             HHHHHHHHHHHHH---hCCccccccchheEEecCCCcEEeCccccCcccchhh---hcccCCCcccccCHHHHhccCCcc
Confidence            8999999999999   9999999999999999999999999999885322111   111122356799999998888899


Q ss_pred             chhhHHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHh
Q 044022          150 KSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLEC  228 (241)
Q Consensus       150 ~~Di~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c  228 (241)
                      ++||||||+++|++++ |..||.....         .+..... ........     ..        ..+..+.+++.+|
T Consensus       203 ~~Di~slG~il~ellt~g~~p~~~~~~---------~~~~~~~-~~~~~~~~-----~~--------~~~~~~~~li~~~  259 (303)
T cd05088         203 NSDVWSYGVLLWEIVSLGGTPYCGMTC---------AELYEKL-PQGYRLEK-----PL--------NCDDEVYDLMRQC  259 (303)
T ss_pred             cccchhhhhHHHHHHhcCCCCcccCCh---------HHHHHHH-hcCCcCCC-----CC--------CCCHHHHHHHHHH
Confidence            9999999999999998 9999854211         1111111 11100000     00        1225688999999


Q ss_pred             ccCCCCCCCCCCC
Q 044022          229 VNNSPEDRPTMVD  241 (241)
Q Consensus       229 l~~~p~~Rpt~~e  241 (241)
                      |+.+|++|||+++
T Consensus       260 l~~~p~~Rp~~~~  272 (303)
T cd05088         260 WREKPYERPSFAQ  272 (303)
T ss_pred             cCCChhhCcCHHH
Confidence            9999999999864

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=100.00  E-value=4.2e-36  Score=246.75  Aligned_cols=205  Identities=21%  Similarity=0.328  Sum_probs=158.6

Q ss_pred             ccHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC--------------------chHHH
Q 044022           11 HTYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP--------------------LPRLK   69 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~--------------------~~~~~   69 (241)
                      ...+++.+|+++++++ +||||++++++|...+..++++||+++|+|.+++....                    ..++.
T Consensus        59 ~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  138 (334)
T cd05100          59 KDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVS  138 (334)
T ss_pred             HHHHHHHHHHHHHHhhcCCCCeeeeeEEEccCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHH
Confidence            3456889999999999 89999999999999999999999999999999986421                    13467


Q ss_pred             HHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCc
Q 044022           70 IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNE  149 (241)
Q Consensus        70 ~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~  149 (241)
                      ++.|++.||.|||   +.+++|+||||+||+++.++.++|+|||.++...............++..|+|||++.+..++.
T Consensus       139 ~~~qi~~al~~LH---~~givH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  215 (334)
T cd05100         139 CAYQVARGMEYLA---SQKCIHRDLAARNVLVTEDNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALFDRVYTH  215 (334)
T ss_pred             HHHHHHHHHHHHH---HCCeeccccccceEEEcCCCcEEECCcccceecccccccccccCCCcCceEcCHHHhccCCcCc
Confidence            8999999999999   9999999999999999999999999999987654432222122223456799999999888999


Q ss_pred             chhhHHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHh
Q 044022          150 KSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLEC  228 (241)
Q Consensus       150 ~~Di~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c  228 (241)
                      ++||||||+++|+|++ |..||....         ..+...... .......+     .        ..+..+.+++.+|
T Consensus       216 ~~Di~slG~il~el~~~g~~p~~~~~---------~~~~~~~~~-~~~~~~~~-----~--------~~~~~l~~li~~c  272 (334)
T cd05100         216 QSDVWSFGVLLWEIFTLGGSPYPGIP---------VEELFKLLK-EGHRMDKP-----A--------NCTHELYMIMREC  272 (334)
T ss_pred             hhhhHHHHHHHHHHHhcCCCCCCCCC---------HHHHHHHHH-cCCCCCCC-----C--------CCCHHHHHHHHHH
Confidence            9999999999999998 888885421         112222211 11111111     1        1225688999999


Q ss_pred             ccCCCCCCCCCCC
Q 044022          229 VNNSPEDRPTMVD  241 (241)
Q Consensus       229 l~~~p~~Rpt~~e  241 (241)
                      |+.+|++|||+.|
T Consensus       273 l~~~p~~Rps~~e  285 (334)
T cd05100         273 WHAVPSQRPTFKQ  285 (334)
T ss_pred             cccChhhCcCHHH
Confidence            9999999999854

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=100.00  E-value=4.3e-36  Score=236.90  Aligned_cols=205  Identities=24%  Similarity=0.358  Sum_probs=158.3

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC--c---hHHHHHHHHHHHhchhhcCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP--L---PRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~--~---~~~~~~~~i~~~l~~lh~~~   85 (241)
                      .....+.+|++++++++|+||+++++++......++|+||+++++|.+++....  .   ..+.++.+++.|+.|||   
T Consensus        34 ~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~lH---  110 (251)
T cd05041          34 DLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVMELVPGGSLLTFLRKKKNRLTVKKLLQMSLDAAAGMEYLE---  110 (251)
T ss_pred             HHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCeEEEEEcCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            355679999999999999999999999999999999999999999999985432  1   45778899999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~  165 (241)
                      +.+++|+||+|+||+++.++.++|+|||.+.................+..|+|||.+.+..++.++|+||||+++|++++
T Consensus       111 ~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~i~~~l~t  190 (251)
T cd05041         111 SKNCIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVSDGLKQIPIKWTAPEALNYGRYTSESDVWSYGILLWETFS  190 (251)
T ss_pred             hCCEehhhcCcceEEEcCCCcEEEeeccccccccCCcceeccccCcceeccCChHhhccCCCCcchhHHHHHHHHHHHHh
Confidence            99999999999999999999999999999875543222111122233566999999988889999999999999999999


Q ss_pred             -cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          166 -GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       166 -g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                       |..||.....         ....... ....  ....+           ...+..+.+++.+||..+|.+|||++|
T Consensus       191 ~~~~p~~~~~~---------~~~~~~~-~~~~--~~~~~-----------~~~~~~~~~li~~~l~~~p~~Rp~~~e  244 (251)
T cd05041         191 LGDTPYPGMSN---------QQTRERI-ESGY--RMPAP-----------QLCPEEIYRLMLQCWAYDPENRPSFSE  244 (251)
T ss_pred             ccCCCCccCCH---------HHHHHHH-hcCC--CCCCC-----------ccCCHHHHHHHHHHhccChhhCcCHHH
Confidence             8888854211         1111111 1110  00000           122357899999999999999999864

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>PHA03207 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=2e-36  Score=253.67  Aligned_cols=154  Identities=22%  Similarity=0.285  Sum_probs=134.1

Q ss_pred             HHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCCCCce
Q 044022           15 SCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFPRPIV   90 (241)
Q Consensus        15 ~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~~~iv   90 (241)
                      .+.+|++++++++||||+++++++......|++||++. ++|.+++.....    .+..++.|++.||.|||   +++|+
T Consensus       132 ~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~l~~~~~~~i~~ql~~aL~~LH---~~giv  207 (392)
T PHA03207        132 TPGREIDILKTISHRAIINLIHAYRWKSTVCMVMPKYK-CDLFTYVDRSGPLPLEQAITIQRRLLEALAYLH---GRGII  207 (392)
T ss_pred             cHHHHHHHHHhcCCCCccceeeeEeeCCEEEEEehhcC-CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCcc
Confidence            45689999999999999999999999999999999996 688888854322    46789999999999999   89999


Q ss_pred             eccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcCccc
Q 044022           91 LRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHI  170 (241)
Q Consensus        91 h~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~~p~  170 (241)
                      ||||||+|||++.++.++|+|||++................||..|+|||++.+..++.++||||||+++|+|++|+.||
T Consensus       208 HrDlkp~Nill~~~~~~~l~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf  287 (392)
T PHA03207        208 HRDVKTENIFLDEPENAVLGDFGAACKLDAHPDTPQCYGWSGTLETNSPELLALDPYCAKTDIWSAGLVLFEMSVKNVTL  287 (392)
T ss_pred             ccCCCHHHEEEcCCCCEEEccCccccccCcccccccccccccccCccCHhHhcCCCCCchhhHHHHHHHHHHHHHCCCCC
Confidence            99999999999999999999999987655443322223456899999999999888999999999999999999999999


Q ss_pred             cc
Q 044022          171 WD  172 (241)
Q Consensus       171 ~~  172 (241)
                      ..
T Consensus       288 ~~  289 (392)
T PHA03207        288 FG  289 (392)
T ss_pred             CC
Confidence            65

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=6.9e-36  Score=237.18  Aligned_cols=203  Identities=22%  Similarity=0.354  Sum_probs=158.4

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC---c---hHHHHHHHHHHHhchhhcCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP---L---PRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~---~---~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ..+++.+|++++++++|+||+++++++...+..++++||+++++|.+++....   .   ....++.+++.|+.+||   
T Consensus        44 ~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---  120 (261)
T cd05068          44 DPKDFLAEAQIMKKLRHPKLIQLYAVCTLEEPIYIVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLE---  120 (261)
T ss_pred             cHHHHHHHHHHHHHCCCCCccceeEEEecCCCeeeeeecccCCcHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            45678999999999999999999999999999999999999999999986543   1   46788999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~  165 (241)
                      +.+++|+||||+||+++.++.++|+|||.+........... .....+..|+|||++.+..++.++|+||||+++|++++
T Consensus       121 ~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t  199 (261)
T cd05068         121 AQNYIHRDLAARNVLVGENNICKVADFGLARVIKEDIYEAR-EGAKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVT  199 (261)
T ss_pred             hCCeeeccCCcceEEEcCCCCEEECCcceEEEccCCccccc-CCCcCceeccCccccccCCCCchhhHHHHHHHHHHHHh
Confidence            89999999999999999999999999999887653221111 11123457999999998889999999999999999999


Q ss_pred             -cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          166 -GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       166 -g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                       |+.||....         ...... ..........     ..        ..+..+.+++.+||+.+|++|||+++
T Consensus       200 ~g~~p~~~~~---------~~~~~~-~~~~~~~~~~-----~~--------~~~~~~~~li~~~l~~~P~~Rp~~~~  253 (261)
T cd05068         200 YGRMPYPGMT---------NAEVLQ-QVDQGYRMPC-----PP--------GCPKELYDIMLDCWKEDPDDRPTFET  253 (261)
T ss_pred             cCCCCCCCCC---------HHHHHH-HHHcCCCCCC-----CC--------cCCHHHHHHHHHHhhcCcccCCCHHH
Confidence             999985421         111111 1111110000     01        12367899999999999999999853

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=8.4e-36  Score=238.97  Aligned_cols=205  Identities=21%  Similarity=0.265  Sum_probs=158.6

Q ss_pred             ccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHHHhchhhc
Q 044022            9 HRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVNSLAYLHF   83 (241)
Q Consensus         9 ~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~~l~~lh~   83 (241)
                      ......++.+|+.++++++||||+++++++.. ...++|+||+++|+|.+++....     ...+.++.+++.|++||| 
T Consensus        49 ~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH-  126 (279)
T cd05057          49 SPKANKEILDEAYVMASVDHPHVVRLLGICLS-SQVQLITQLMPLGCLLDYVRNHKDNIGSQYLLNWCVQIAKGMSYLE-  126 (279)
T ss_pred             CHHHHHHHHHHHHHHHhCCCCCcceEEEEEec-CceEEEEecCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH-
Confidence            33445778899999999999999999999987 77899999999999999986642     146788999999999999 


Q ss_pred             CCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHH
Q 044022           84 GFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL  163 (241)
Q Consensus        84 ~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~  163 (241)
                        +.+++|+||+|+||+++.++.++|+|||.+................++..|+|||.+....++.++|+||||+++|++
T Consensus       127 --~~~i~H~di~p~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el  204 (279)
T cd05057         127 --EKRLVHRDLAARNVLVKTPQHVKITDFGLAKLLDVDEKEYHAEGGKVPIKWMALESILHRIYTHKSDVWSYGVTVWEL  204 (279)
T ss_pred             --hCCEEecccCcceEEEcCCCeEEECCCcccccccCcccceecCCCcccccccCHHHhhcCCcCchhhHHHHHHHHHHH
Confidence              899999999999999999999999999998766543322221222235679999999888889999999999999999


Q ss_pred             Hh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          164 LA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       164 ~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                      ++ |+.||...         ...+...... .+...  ..+   .        .++..+.+++.+||..||+.|||+.
T Consensus       205 ~~~g~~p~~~~---------~~~~~~~~~~-~~~~~--~~~---~--------~~~~~~~~~~~~~l~~~p~~Rp~~~  259 (279)
T cd05057         205 MTFGAKPYEGI---------PAVEIPDLLE-KGERL--PQP---P--------ICTIDVYMVLVKCWMIDAESRPTFK  259 (279)
T ss_pred             hcCCCCCCCCC---------CHHHHHHHHh-CCCCC--CCC---C--------CCCHHHHHHHHHHcCCChhhCCCHH
Confidence            98 99998542         1112221111 11111  111   1        1224688999999999999999975

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=100.00  E-value=7.7e-36  Score=237.72  Aligned_cols=205  Identities=24%  Similarity=0.347  Sum_probs=159.0

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHHHhchhhcCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ...+.+.+|++++++++|+|++++.+++...+..++||||+++++|.+++....     .....++.+++.|+.|||   
T Consensus        48 ~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH---  124 (268)
T cd05063          48 KQRQDFLSEASIMGQFSHHNIIRLEGVVTKFKPAMIITEYMENGALDKYLRDHDGEFSSYQLVGMLRGIAAGMKYLS---  124 (268)
T ss_pred             HHHHHHHHHHHHHhcCCCCCeeEEEEEEccCCCcEEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            345678999999999999999999999999999999999999999999986532     146788999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCccee-ecccccCCCccCcccccccCCCcchhhHHHHHHHHHHH
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHIT-TDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~-~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~  164 (241)
                      +.+++|+||||+||+++.++.++++|||.+........... ......+..|+|||++....++.++|+||||+++|+++
T Consensus       125 ~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~il~ell  204 (268)
T cd05063         125 DMNYVHRDLAARNILVNSNLECKVSDFGLSRVLEDDPEGTYTTSGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVM  204 (268)
T ss_pred             HCCeeccccchhhEEEcCCCcEEECCCccceecccccccceeccCCCcCceecCHHHhhcCCcChHhHHHHHHHHHHHHH
Confidence            89999999999999999999999999999876543322111 11122345699999998888899999999999999999


Q ss_pred             h-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          165 A-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       165 ~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      + |+.||....         ..+...... ...  ..+.   ..        ..+..+.+++.+||..+|++||++.+
T Consensus       205 ~~g~~p~~~~~---------~~~~~~~i~-~~~--~~~~---~~--------~~~~~~~~li~~c~~~~p~~Rp~~~~  259 (268)
T cd05063         205 SFGERPYWDMS---------NHEVMKAIN-DGF--RLPA---PM--------DCPSAVYQLMLQCWQQDRARRPRFVD  259 (268)
T ss_pred             hCCCCCCCcCC---------HHHHHHHHh-cCC--CCCC---CC--------CCCHHHHHHHHHHcCCCcccCcCHHH
Confidence            7 999985421         112222221 111  0010   01        12357889999999999999999853

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=8.2e-37  Score=239.50  Aligned_cols=224  Identities=20%  Similarity=0.227  Sum_probs=163.3

Q ss_pred             ccccccHHHHHHHHHHHHhcCCCcccceeeeeee-----CCcceEEEEecCCCCHHHhhcCCC-c---hHHHHHHHHHHH
Q 044022            7 EYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQ-----TPIPILVFQSVEYGTLRDCIFGAP-L---PRLKIASDIVNS   77 (241)
Q Consensus         7 ~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-----~~~~~lv~e~~~~~sL~~~l~~~~-~---~~~~~~~~i~~~   77 (241)
                      ..+....++-++|+++|+.++|+||+.+.+.+..     -+..|+|+|+|+ .+|.+.++... .   ....++.|++.|
T Consensus        59 F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f~DvYiV~elMe-tDL~~iik~~~~L~d~H~q~f~YQiLrg  137 (359)
T KOG0660|consen   59 FENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKFNDVYLVFELME-TDLHQIIKSQQDLTDDHAQYFLYQILRG  137 (359)
T ss_pred             hhchHHHHHHHHHHHHHHHhcCCCcceEEeecccccccccceeEEehhHHh-hHHHHHHHcCccccHHHHHHHHHHHHHh
Confidence            3344567888999999999999999999999875     236899999995 79999998775 2   356678899999


Q ss_pred             hchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc-CCCcchhhHHH
Q 044022           78 LAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-VLNEKSNVFSF  156 (241)
Q Consensus        78 l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~  156 (241)
                      |+|+|   +.+++||||||.|++++.+..+||+|||+++..........-+..+.|..|+|||.+... .|+...||||.
T Consensus       138 LKyiH---SAnViHRDLKPsNll~n~~c~lKI~DFGLAR~~~~~~~~~~mTeYVaTRWYRAPElll~~~~Yt~aiDiWSv  214 (359)
T KOG0660|consen  138 LKYIH---SANVIHRDLKPSNLLLNADCDLKICDFGLARYLDKFFEDGFMTEYVATRWYRAPELLLNSSEYTKAIDIWSV  214 (359)
T ss_pred             cchhh---cccccccccchhheeeccCCCEEeccccceeeccccCcccchhcceeeeeecCHHHHhccccccchhhhhhh
Confidence            99999   999999999999999999999999999999987543212222446778899999988654 78999999999


Q ss_pred             HHHHHHHHhcCccccccc--------------ccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHH
Q 044022          157 GAFLFELLAGRIHIWDLL--------------KDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASA  222 (241)
Q Consensus       157 G~~~~~~~~g~~p~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (241)
                      |||+.||++|++-|....              .+.........+.++.+....  ...+...+...++     ..++...
T Consensus       215 GCI~AEmL~gkplFpG~d~v~Ql~lI~~~lGtP~~e~l~~i~s~~ar~yi~sl--p~~p~~~f~~~fp-----~a~p~Ai  287 (359)
T KOG0660|consen  215 GCILAEMLTGKPLFPGKDYVHQLQLILELLGTPSEEDLQKIRSEKARPYIKSL--PQIPKQPFSSIFP-----NANPLAI  287 (359)
T ss_pred             hHHHHHHHcCCCCCCCCchHHHHHHHHHhcCCCCHHHHHHhccHHHHHHHHhC--CCCCCCCHHHHcC-----CCCHHHH
Confidence            999999999998874310              000000001111112221111  1111111111122     3336788


Q ss_pred             HHHHHhccCCCCCCCCCCC
Q 044022          223 QLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       223 ~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +|+.+||..||.+|+|++|
T Consensus       288 dLlekmL~fdP~kRita~e  306 (359)
T KOG0660|consen  288 DLLEKMLVFDPKKRITAEE  306 (359)
T ss_pred             HHHHHHhccCccccCCHHH
Confidence            9999999999999999875

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=100.00  E-value=7.4e-36  Score=238.26  Aligned_cols=205  Identities=23%  Similarity=0.351  Sum_probs=155.2

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeC------CcceEEEEecCCCCHHHhhcCC-----C-----chHHHHHHHH
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQT------PIPILVFQSVEYGTLRDCIFGA-----P-----LPRLKIASDI   74 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~------~~~~lv~e~~~~~sL~~~l~~~-----~-----~~~~~~~~~i   74 (241)
                      ...+.+.+|+++++.++|+||+++++++...      ...++++||+++|+|.+++...     .     .....++.++
T Consensus        42 ~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i  121 (272)
T cd05075          42 SEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPSPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDI  121 (272)
T ss_pred             HHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCCCcEEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHH
Confidence            3466788999999999999999999987532      2568999999999999886321     1     1356789999


Q ss_pred             HHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhH
Q 044022           75 VNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVF  154 (241)
Q Consensus        75 ~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~  154 (241)
                      +.||+|||   +++++||||||+||+++.++.++|+|||.+................++..|+|||+..+..++.++|||
T Consensus       122 ~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Di~  198 (272)
T cd05075         122 ASGMEYLS---SKSFIHRDLAARNCMLNENMNVCVADFGLSKKIYNGDYYRQGRIAKMPVKWIAIESLADRVYTTKSDVW  198 (272)
T ss_pred             HHHHHHHH---HCCeeccccchhheEEcCCCCEEECCCCcccccCcccceecCCcccCCcccCCHHHccCCCcChHHHHH
Confidence            99999999   899999999999999999999999999998866443322222233456789999999988899999999


Q ss_pred             HHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCC
Q 044022          155 SFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSP  233 (241)
Q Consensus       155 s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p  233 (241)
                      |||+++|++++ |+.||.....         .+.... ...+....     ...        ..+..+.+++.+||+.||
T Consensus       199 slG~il~el~~~g~~p~~~~~~---------~~~~~~-~~~~~~~~-----~~~--------~~~~~~~~li~~~l~~~p  255 (272)
T cd05075         199 SFGVTMWEIATRGQTPYPGVEN---------SEIYDY-LRQGNRLK-----QPP--------DCLDGLYSLMSSCWLLNP  255 (272)
T ss_pred             HHHHHHHHHHcCCCCCCCCCCH---------HHHHHH-HHcCCCCC-----CCC--------CCCHHHHHHHHHHcCCCc
Confidence            99999999999 7888854111         111111 11111100     011        122568899999999999


Q ss_pred             CCCCCCCC
Q 044022          234 EDRPTMVD  241 (241)
Q Consensus       234 ~~Rpt~~e  241 (241)
                      ++|||++|
T Consensus       256 ~~Rps~~~  263 (272)
T cd05075         256 KDRPSFET  263 (272)
T ss_pred             ccCcCHHH
Confidence            99999864

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=100.00  E-value=7.9e-36  Score=237.65  Aligned_cols=204  Identities=22%  Similarity=0.330  Sum_probs=158.8

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc-----hHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL-----PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-----~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ..+.|.+|+.++++++||||+++++++..++..++||||+++++|.+++.....     ..+.++.+++.|+++||   +
T Consensus        48 ~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~  124 (267)
T cd05066          48 QRRDFLSEASIMGQFDHPNIIHLEGVVTKSKPVMIVTEYMENGSLDAFLRKHDGQFTVIQLVGMLRGIASGMKYLS---D  124 (267)
T ss_pred             HHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            456789999999999999999999999999999999999999999999865421     46788999999999999   9


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceee-cccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITT-DRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~-~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~  165 (241)
                      .+++|+||||+||+++.++.++++|||.+............ ....++..|+|||++.+..++.++|+||||+++|++++
T Consensus       125 ~~i~h~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~ell~  204 (267)
T cd05066         125 MGYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMS  204 (267)
T ss_pred             CCEeehhhchhcEEECCCCeEEeCCCCcccccccccceeeecCCCccceeecCHhHhccCccCchhhhHHHHHHHHHHhc
Confidence            99999999999999999999999999998766543221111 11223457999999998889999999999999999886


Q ss_pred             -cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          166 -GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       166 -g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                       |..||.....         .+...... ...  ..+.   ..        ..+..+.+++.+||+.+|.+|||+.+
T Consensus       205 ~g~~p~~~~~~---------~~~~~~~~-~~~--~~~~---~~--------~~~~~~~~li~~~l~~~p~~Rp~~~~  258 (267)
T cd05066         205 YGERPYWEMSN---------QDVIKAIE-EGY--RLPA---PM--------DCPAALHQLMLDCWQKDRNERPKFEQ  258 (267)
T ss_pred             CCCCCcccCCH---------HHHHHHHh-CCC--cCCC---CC--------CCCHHHHHHHHHHcccCchhCCCHHH
Confidence             9999865211         11111111 110  0110   01        12357889999999999999999864

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=100.00  E-value=6.5e-37  Score=263.24  Aligned_cols=205  Identities=20%  Similarity=0.256  Sum_probs=157.9

Q ss_pred             ccccHHHHHHHHHHHHhcC-CCcccceeeeee-eC------CcceEEEEecCCCCHHHhhcCC------CchHHHHHHHH
Q 044022            9 HRHTYGSCINNITYAAQMS-HNHILKRIGCCL-QT------PIPILVFQSVEYGTLRDCIFGA------PLPRLKIASDI   74 (241)
Q Consensus         9 ~~~~~~~~~~e~~~l~~l~-h~~iv~~~~~~~-~~------~~~~lv~e~~~~~sL~~~l~~~------~~~~~~~~~~i   74 (241)
                      +++..+...+||++|++|+ |+|||.+++... ..      -.+++.||||+||+|-+++...      +..+++|+.++
T Consensus        74 de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~~~EvllLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv  153 (738)
T KOG1989|consen   74 DEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNGVWEVLLLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDV  153 (738)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCceeEEEeehhhccCCcHHHHHHHHHhccCChHHHHHHHHHH
Confidence            4456777889999999996 999999999432 21      2568999999999999998643      33689999999


Q ss_pred             HHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCC-cce------eecccccCCCccCccccc---c
Q 044022           75 VNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGE-THI------TTDRVIGTRGYSAPEYIS---I  144 (241)
Q Consensus        75 ~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~-~~~------~~~~~~~~~~~~aPE~~~---~  144 (241)
                      ++|+++||.+ +-+|+|||||.+|||++.++..||||||.+....... ...      ..-...-|+.|+|||.+.   +
T Consensus       154 ~~AVa~mH~~-~pPiIHRDLKiENvLls~~g~~KLCDFGSatt~~~~~~~~~e~~~ve~eI~k~TTp~YRsPEMIDlysg  232 (738)
T KOG1989|consen  154 CEAVAAMHYL-KPPIIHRDLKIENVLLSADGNYKLCDFGSATTKILSPTSAQEVNYVEEEIEKYTTPQYRSPEMIDLYSG  232 (738)
T ss_pred             HHHHHHHhcC-CCccchhhhhhhheEEcCCCCEEeCcccccccccCCCccHHHHHHHHHHHHhhCCccccChHHHhhhcC
Confidence            9999999954 5669999999999999999999999999875332211 100      011234689999999874   5


Q ss_pred             cCCCcchhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHH
Q 044022          145 CVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQL  224 (241)
Q Consensus       145 ~~~~~~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  224 (241)
                      ..++.|+|||||||++|.++....||.....                          ...+...+..+....++..+.+|
T Consensus       233 ~pI~eKsDIWALGclLYkLCy~t~PFe~sg~--------------------------laIlng~Y~~P~~p~ys~~l~~L  286 (738)
T KOG1989|consen  233 LPIGEKSDIWALGCLLYKLCYFTTPFEESGK--------------------------LAILNGNYSFPPFPNYSDRLKDL  286 (738)
T ss_pred             CCCcchhHHHHHHHHHHHHHHhCCCcCcCcc--------------------------eeEEeccccCCCCccHHHHHHHH
Confidence            5789999999999999999999999965100                          11112222222223677899999


Q ss_pred             HHHhccCCCCCCCCCC
Q 044022          225 TLECVNNSPEDRPTMV  240 (241)
Q Consensus       225 ~~~cl~~~p~~Rpt~~  240 (241)
                      |+.||+.||.+||++-
T Consensus       287 I~~mL~~nP~~RPnI~  302 (738)
T KOG1989|consen  287 IRTMLQPNPDERPNIY  302 (738)
T ss_pred             HHHHhccCcccCCCHH
Confidence            9999999999999873

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.5e-36  Score=240.52  Aligned_cols=213  Identities=23%  Similarity=0.289  Sum_probs=165.9

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc---hHHHHHHHHHHHh
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL---PRLKIASDIVNSL   78 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~i~~~l   78 (241)
                      |.+..+........+.+|++++++++|+|++++++++..+...++|+||+++++|.+++.....   ....++.+++.|+
T Consensus        32 k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~ql~~~l  111 (274)
T cd06609          32 KVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSKLWIIMEYCGGGSCLDLLKPGKLDETYIAFILREVLLGL  111 (274)
T ss_pred             EEeeccccchHHHHHHHHHHHHHHcCCCCeeeeeEEEEECCeEEEEEEeeCCCcHHHHHhhcCCCHHHHHHHHHHHHHHH
Confidence            4444333334556788999999999999999999999999999999999999999999887532   4678899999999


Q ss_pred             chhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHH
Q 044022           79 AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGA  158 (241)
Q Consensus        79 ~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~  158 (241)
                      .|||   +.+++|+||+|+||+++.++.++++|||.+........  ......++..|+|||++.+..++.++|+||||+
T Consensus       112 ~~lh---~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~--~~~~~~~~~~y~~PE~~~~~~~~~~sDv~slG~  186 (274)
T cd06609         112 EYLH---EEGKIHRDIKAANILLSEEGDVKLADFGVSGQLTSTMS--KRNTFVGTPFWMAPEVIKQSGYDEKADIWSLGI  186 (274)
T ss_pred             HHHH---hCCcccCCCCHHHEEECCCCCEEEcccccceeeccccc--ccccccCCccccChhhhccCCCCchhhHHHHHH
Confidence            9999   89999999999999999999999999999877654321  112345778899999999888999999999999


Q ss_pred             HHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCC
Q 044022          159 FLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT  238 (241)
Q Consensus       159 ~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt  238 (241)
                      ++|++++|+.||.....         ........ ..     ..+.+...       ..+..+.+++.+||..+|++|||
T Consensus       187 il~~l~tg~~p~~~~~~---------~~~~~~~~-~~-----~~~~~~~~-------~~~~~~~~~l~~~l~~~p~~Rpt  244 (274)
T cd06609         187 TAIELAKGEPPLSDLHP---------MRVLFLIP-KN-----NPPSLEGN-------KFSKPFKDFVSLCLNKDPKERPS  244 (274)
T ss_pred             HHHHHHhCCCCcccCch---------HHHHHHhh-hc-----CCCCCccc-------ccCHHHHHHHHHHhhCChhhCcC
Confidence            99999999999954210         01111111 11     01111111       13357889999999999999999


Q ss_pred             CCC
Q 044022          239 MVD  241 (241)
Q Consensus       239 ~~e  241 (241)
                      +++
T Consensus       245 ~~~  247 (274)
T cd06609         245 AKE  247 (274)
T ss_pred             HHH
Confidence            854

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=100.00  E-value=1.2e-36  Score=252.86  Aligned_cols=157  Identities=18%  Similarity=0.279  Sum_probs=135.9

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc---hHHHHHHHHHHHhchhhcCCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL---PRLKIASDIVNSLAYLHFGFPRP   88 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~i~~~l~~lh~~~~~~   88 (241)
                      ....+.+|+.+++.++||||+++++++..+...++||||+++|+|.+++.....   ....++.+|+.||.|||   +++
T Consensus        86 ~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~~lv~Ey~~gg~L~~~l~~~~~~~~~~~~~~~qil~aL~~LH---~~~  162 (370)
T cd05621          86 DSAFFWEERDIMAFANSPWVVQLFCAFQDDKYLYMVMEYMPGGDLVNLMSNYDVPEKWAKFYTAEVVLALDAIH---SMG  162 (370)
T ss_pred             hHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH---HCC
Confidence            345678999999999999999999999999999999999999999999876533   45678899999999999   999


Q ss_pred             ceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc----CCCcchhhHHHHHHHHHHH
Q 044022           89 IVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC----VLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        89 ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~----~~~~~~Di~s~G~~~~~~~  164 (241)
                      |+||||||+|||++.++.+||+|||++........ .......||+.|+|||++.+.    .++.++|+||+|+++|+|+
T Consensus       163 IvHrDLKp~NILl~~~~~~kL~DFG~a~~~~~~~~-~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyell  241 (370)
T cd05621         163 LIHRDVKPDNMLLDKHGHLKLADFGTCMKMDETGM-VRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEML  241 (370)
T ss_pred             eEecCCCHHHEEECCCCCEEEEecccceecccCCc-eecccCCCCcccCCHHHHhccCCCCCCCcccCEEeehHHHHHHH
Confidence            99999999999999999999999999976543221 122345789999999998754    3778999999999999999


Q ss_pred             hcCccccc
Q 044022          165 AGRIHIWD  172 (241)
Q Consensus       165 ~g~~p~~~  172 (241)
                      +|+.||..
T Consensus       242 ~G~~Pf~~  249 (370)
T cd05621         242 VGDTPFYA  249 (370)
T ss_pred             hCCCCCCC
Confidence            99999964

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=100.00  E-value=5.4e-36  Score=238.79  Aligned_cols=214  Identities=21%  Similarity=0.338  Sum_probs=161.6

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHH
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVN   76 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~   76 (241)
                      |....+........|.+|+.++++++||||+++.+++..++..++|+||+++++|.+++....     .....++.+++.
T Consensus        38 K~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~l~~  117 (269)
T cd05065          38 KTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSRPVMIITEFMENGALDSFLRQNDGQFTVIQLVGMLRGIAA  117 (269)
T ss_pred             EEcCCCCCHHHHHHHHHHHHHHHhCCCcCcceEEEEECCCCceEEEEecCCCCcHHHHHhhCCCCCCHHHHHHHHHHHHH
Confidence            444443344456789999999999999999999999999999999999999999999986532     146788999999


Q ss_pred             HhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccc---cCCCccCcccccccCCCcchhh
Q 044022           77 SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI---GTRGYSAPEYISICVLNEKSNV  153 (241)
Q Consensus        77 ~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~---~~~~~~aPE~~~~~~~~~~~Di  153 (241)
                      |++|||   +.+++|+||+|+||+++.++.++++|||.+................   .+..|+|||++.+..++.++||
T Consensus       118 al~~lH---~~g~~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv  194 (269)
T cd05065         118 GMKYLS---EMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSSLGGKIPIRWTAPEAIAYRKFTSASDV  194 (269)
T ss_pred             HHHHHH---HCCEeecccChheEEEcCCCcEEECCCccccccccCccccccccccCCCcceeecCHhHhccCcccchhhh
Confidence            999999   8999999999999999999999999999886554322111111111   1346999999998889999999


Q ss_pred             HHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCC
Q 044022          154 FSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNS  232 (241)
Q Consensus       154 ~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~  232 (241)
                      ||||+++||+++ |..||.....         .+...... ..  ...+.   ..        ..+..+.+++.+||..+
T Consensus       195 wslG~~l~e~l~~g~~p~~~~~~---------~~~~~~i~-~~--~~~~~---~~--------~~~~~~~~li~~~l~~~  251 (269)
T cd05065         195 WSYGIVMWEVMSYGERPYWDMSN---------QDVINAIE-QD--YRLPP---PM--------DCPTALHQLMLDCWQKD  251 (269)
T ss_pred             hhhHHHHHHHhcCCCCCCCCCCH---------HHHHHHHH-cC--CcCCC---cc--------cCCHHHHHHHHHHcCCC
Confidence            999999999886 9999865211         11111111 11  01111   11        22356889999999999


Q ss_pred             CCCCCCCCC
Q 044022          233 PEDRPTMVD  241 (241)
Q Consensus       233 p~~Rpt~~e  241 (241)
                      |++|||+++
T Consensus       252 p~~Rp~~~~  260 (269)
T cd05065         252 RNARPKFGQ  260 (269)
T ss_pred             hhhCcCHHH
Confidence            999999853

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=100.00  E-value=2.2e-36  Score=247.46  Aligned_cols=205  Identities=16%  Similarity=0.196  Sum_probs=159.8

Q ss_pred             cccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCC
Q 044022           10 RHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        10 ~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~   85 (241)
                      +........|=.+|....+|+||+++-.|++...+|+||||++||++.++|.....    ....++.+++.|+..+|   
T Consensus       182 ~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~~LYLiMEylPGGD~mTLL~~~~~L~e~~arfYiaE~vlAI~~iH---  258 (550)
T KOG0605|consen  182 KNQVEHVRAERDILAEVDSPWVVKLYYSFQDKEYLYLIMEYLPGGDMMTLLMRKDTLTEDWARFYIAETVLAIESIH---  258 (550)
T ss_pred             hhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCCeeEEEEEecCCccHHHHHHhcCcCchHHHHHHHHHHHHHHHHHH---
Confidence            35567788899999999999999999999999999999999999999999876533    45678889999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCC---------------------CCcce-----e-------------
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPE---------------------GETHI-----T-------------  126 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~---------------------~~~~~-----~-------------  126 (241)
                      +.|++||||||+|+|||..|++||+|||++.....                     .....     .             
T Consensus       259 ~~gyIHRDIKPdNlLiD~~GHiKLSDFGLs~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~  338 (550)
T KOG0605|consen  259 QLGYIHRDIKPDNLLIDAKGHIKLSDFGLSTGLDKKHRIESYRLDEQMQINLSEAKPSDFPKFNTPRSTMSRREQLQTWK  338 (550)
T ss_pred             HcCcccccCChhheeecCCCCEeeccccccchhhhhhhhhhhcchhhhhhhhccCCCccccccccccchhhHHHHHHHHH
Confidence            99999999999999999999999999999853311                     00000     0             


Q ss_pred             ------ecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCC
Q 044022          127 ------TDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGI  200 (241)
Q Consensus       127 ------~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (241)
                            ..+.+|||-|+|||++.+..|+..+|.||+|||+|||+.|.+||+...         ..+.-+....-......
T Consensus       339 ~nrr~~a~StVGTPDYiAPEVll~kgY~~~cDwWSLG~ImyEmLvGyPPF~s~t---------p~~T~rkI~nwr~~l~f  409 (550)
T KOG0605|consen  339 RNRRQLAYSTVGTPDYIAPEVLLGKGYGKECDWWSLGCIMYEMLVGYPPFCSET---------PQETYRKIVNWRETLKF  409 (550)
T ss_pred             hhhhhhhhcccCCccccchHHHhcCCCCccccHHHHHHHHHHHHhCCCCCCCCC---------HHHHHHHHHHHhhhccC
Confidence                  113679999999999999999999999999999999999999997621         12222222211111122


Q ss_pred             CCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCC
Q 044022          201 PAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT  238 (241)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt  238 (241)
                      +...           ..+....+||.+|+. ||++|..
T Consensus       410 P~~~-----------~~s~eA~DLI~rll~-d~~~RLG  435 (550)
T KOG0605|consen  410 PEEV-----------DLSDEAKDLITRLLC-DPENRLG  435 (550)
T ss_pred             CCcC-----------cccHHHHHHHHHHhc-CHHHhcC
Confidence            2111           222567899999999 9999975

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=100.00  E-value=2e-36  Score=259.71  Aligned_cols=205  Identities=19%  Similarity=0.225  Sum_probs=158.6

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCC--------cceEEEEecCCCCHHHhhcCCC-----c---hHHHHHHHH
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTP--------IPILVFQSVEYGTLRDCIFGAP-----L---PRLKIASDI   74 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--------~~~lv~e~~~~~sL~~~l~~~~-----~---~~~~~~~~i   74 (241)
                      .....+.+|+.++..++|+|++++++.+....        ..++||||+++|+|.+++....     .   ....++.|+
T Consensus        73 ~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~~~~~~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~ql  152 (496)
T PTZ00283         73 ADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRNPENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQV  152 (496)
T ss_pred             HHHHHHHHHHHHHhcCCCCcEEEeecceecccccCcccceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHH
Confidence            44567889999999999999999988775432        3679999999999999885421     1   356789999


Q ss_pred             HHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhH
Q 044022           75 VNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVF  154 (241)
Q Consensus        75 ~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~  154 (241)
                      +.||.|||   +.+++||||||+|||++.++.+||+|||+++...............||+.|+|||++.+..++.++|||
T Consensus       153 l~aL~~lH---~~~IiHrDLKP~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~s~k~DVw  229 (496)
T PTZ00283        153 LLAVHHVH---SKHMIHRDIKSANILLCSNGLVKLGDFGFSKMYAATVSDDVGRTFCGTPYYVAPEIWRRKPYSKKADMF  229 (496)
T ss_pred             HHHHHHHH---hCCEecCCCCHHHEEEeCCCCEEEEecccCeeccccccccccccccCCcceeCHHHhCCCCCCcHHHHH
Confidence            99999999   899999999999999999999999999998765433222222345689999999999988999999999


Q ss_pred             HHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCC
Q 044022          155 SFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPE  234 (241)
Q Consensus       155 s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~  234 (241)
                      |||+++|+|++|+.||...         ...+...... .+....     +..        ..++.+.+++.+||+.||+
T Consensus       230 SlGvilyeLltG~~Pf~~~---------~~~~~~~~~~-~~~~~~-----~~~--------~~~~~l~~li~~~L~~dP~  286 (496)
T PTZ00283        230 SLGVLLYELLTLKRPFDGE---------NMEEVMHKTL-AGRYDP-----LPP--------SISPEMQEIVTALLSSDPK  286 (496)
T ss_pred             HHHHHHHHHHHCCCCCCCC---------CHHHHHHHHh-cCCCCC-----CCC--------CCCHHHHHHHHHHcccChh
Confidence            9999999999999999541         1112222211 111111     111        1235788999999999999


Q ss_pred             CCCCCCC
Q 044022          235 DRPTMVD  241 (241)
Q Consensus       235 ~Rpt~~e  241 (241)
                      +|||+.+
T Consensus       287 ~RPs~~e  293 (496)
T PTZ00283        287 RRPSSSK  293 (496)
T ss_pred             hCcCHHH
Confidence            9999753

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=8.9e-37  Score=227.12  Aligned_cols=200  Identities=19%  Similarity=0.273  Sum_probs=166.0

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC------CchHHHHHHHHHHHhchhhcC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA------PLPRLKIASDIVNSLAYLHFG   84 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~------~~~~~~~~~~i~~~l~~lh~~   84 (241)
                      ....++.+|++|...|+||||.+++++|.++...|+++||...|+|...|+..      +.....++.|++.|+.|+|  
T Consensus        64 ~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~riyLilEya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~h--  141 (281)
T KOG0580|consen   64 QVEHQLRREIEIQSHLRHPNILRLYGYFHDSKRIYLILEYAPRGELYKDLQEGRMKRFDEQRAATYIKQLANALLYCH--  141 (281)
T ss_pred             cchhhhhheeEeecccCCccHHhhhhheeccceeEEEEEecCCchHHHHHHhcccccccccchhHHHHHHHHHHHHhc--
Confidence            56788999999999999999999999999999999999999999999999843      2356789999999999999  


Q ss_pred             CCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHH
Q 044022           85 FPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        85 ~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~  164 (241)
                       .++++||||||+|+|++..+..|++|||-++..+...    ..+.+||.-|++||...+...+..+|+|++|++.||++
T Consensus       142 -~k~VIhRdiKpenlLlg~~~~lkiAdfGwsV~~p~~k----R~tlcgt~dyl~pEmv~~~~hd~~Vd~w~lgvl~yefl  216 (281)
T KOG0580|consen  142 -LKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSNK----RKTLCGTLDYLPPEMVEGRGHDKFVDLWSLGVLCYEFL  216 (281)
T ss_pred             -cCCcccCCCCHHHhccCCCCCeeccCCCceeecCCCC----ceeeecccccCCHhhcCCCCccchhhHHHHHHHHHHHH
Confidence             9999999999999999999999999999987665332    34568999999999999999999999999999999999


Q ss_pred             hcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          165 AGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       165 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      .|.+||.+..         ..+..+...+-.    ...+   .        ..+....++|.+|+.++|.+|.+..|
T Consensus       217 vg~ppFes~~---------~~etYkrI~k~~----~~~p---~--------~is~~a~dlI~~ll~~~p~~r~~l~~  269 (281)
T KOG0580|consen  217 VGLPPFESQS---------HSETYKRIRKVD----LKFP---S--------TISGGAADLISRLLVKNPIERLALTE  269 (281)
T ss_pred             hcCCchhhhh---------hHHHHHHHHHcc----ccCC---c--------ccChhHHHHHHHHhccCccccccHHH
Confidence            9999996521         222222222111    1111   1        22256789999999999999988653

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=100.00  E-value=1.1e-36  Score=246.16  Aligned_cols=204  Identities=18%  Similarity=0.264  Sum_probs=160.0

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc---hHHHHHHHHHHHhchhhcCCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL---PRLKIASDIVNSLAYLHFGFPRP   88 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~i~~~l~~lh~~~~~~   88 (241)
                      ..+.+.+|+.++++++|+|++++++.+..+...++|+||+++++|.+++.....   ....++.+++.||.|||   +.+
T Consensus        60 ~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~i~~ql~~aL~~LH---~~g  136 (296)
T cd06654          60 KKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLH---SNQ  136 (296)
T ss_pred             hHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEeecccCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH---HCC
Confidence            456788999999999999999999999999999999999999999999875432   56788999999999999   899


Q ss_pred             ceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcCc
Q 044022           89 IVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRI  168 (241)
Q Consensus        89 ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~~  168 (241)
                      ++|+||||+||+++.++.++|+|||.+.........  .....+++.|+|||.+.+..++.++|+||||+++|+|++|+.
T Consensus       137 i~H~dLkp~Nill~~~~~~kl~dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Dv~s~Gvil~~l~~g~~  214 (296)
T cd06654         137 VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK--RSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEP  214 (296)
T ss_pred             cccCCCCHHHEEEcCCCCEEECccccchhccccccc--cCcccCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999988754332211  122357889999999988888999999999999999999999


Q ss_pred             ccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          169 HIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       169 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ||.....         ............ .....   .        ...+..+.+++.+||..+|++|||++|
T Consensus       215 pf~~~~~---------~~~~~~~~~~~~-~~~~~---~--------~~~~~~l~~li~~~l~~~p~~Rpt~~e  266 (296)
T cd06654         215 PYLNENP---------LRALYLIATNGT-PELQN---P--------EKLSAIFRDFLNRCLDMDVEKRGSAKE  266 (296)
T ss_pred             CCCCCCH---------HHhHHHHhcCCC-CCCCC---c--------cccCHHHHHHHHHHCcCCcccCcCHHH
Confidence            9954211         011111111110 00000   0        123356889999999999999999854

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.4e-36  Score=242.93  Aligned_cols=200  Identities=21%  Similarity=0.295  Sum_probs=156.0

Q ss_pred             HHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC---Cc---hHHHHHHHHHHHhchhhcCCC
Q 044022           13 YGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA---PL---PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~---~~---~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ...+.+|+++++.++||||+++++++..++..++||||+++|+|.+++...   ..   ....++.|++.|+.|||   +
T Consensus        44 ~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~  120 (285)
T cd05605          44 EAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLH---R  120 (285)
T ss_pred             HHHHHHHHHHHHhcCCCCEeeeeeeecCCCeEEEEEeccCCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            456788999999999999999999999999999999999999999887432   11   35678999999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhc
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      .+++|+||||+||+++.++.++|+|||.+.........   ....|+..|+|||++.+..++.++||||+|+++|++++|
T Consensus       121 ~~ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Diws~G~~l~el~~g  197 (285)
T cd05605         121 ERIVYRDLKPENILLDDYGHIRISDLGLAVEIPEGETI---RGRVGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEG  197 (285)
T ss_pred             CCcEecCCCHHHEEECCCCCEEEeeCCCceecCCCCcc---ccccCCCCccCcHHhcCCCCCccccchhHHHHHHHHHHC
Confidence            99999999999999999999999999998765433221   234688999999999988899999999999999999999


Q ss_pred             CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCC
Q 044022          167 RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT  238 (241)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt  238 (241)
                      ..||......      ...+..........      ....        ...+..+.+++.+||..||++||+
T Consensus       198 ~~pf~~~~~~------~~~~~~~~~~~~~~------~~~~--------~~~~~~~~~li~~~l~~~P~~R~~  249 (285)
T cd05605         198 KSPFRQRKEK------VKREEVERRVKEDQ------EEYS--------EKFSEAARSICRQLLTKDPGFRLG  249 (285)
T ss_pred             CCCCCCCchh------hHHHHHHHHhhhcc------cccC--------cccCHHHHHHHHHHccCCHHHhcC
Confidence            9999642111      00011111111100      0001        123357889999999999999994

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=100.00  E-value=1.7e-36  Score=246.49  Aligned_cols=165  Identities=21%  Similarity=0.256  Sum_probs=134.8

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHH
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVN   76 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~   76 (241)
                      |.+...........+.+|++++++++||||+++++++..++..++||||++ ++|.+++....     .....++.|++.
T Consensus        37 K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~  115 (309)
T cd07872          37 KEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIVHTDKSLTLVFEYLD-KDLKQYMDDCGNIMSMHNVKIFLYQILR  115 (309)
T ss_pred             EEeeccccCCcchhHHHHHHHHHhCCCCCcceEEEEEeeCCeEEEEEeCCC-CCHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence            444333333345568899999999999999999999999999999999997 58888775432     135678899999


Q ss_pred             HhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc-cCCCcchhhHH
Q 044022           77 SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI-CVLNEKSNVFS  155 (241)
Q Consensus        77 ~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s  155 (241)
                      ||.|||   +.+++||||||+||+++.++.++|+|||.+.........  .....++..|+|||.+.+ ..++.++||||
T Consensus       116 aL~~lH---~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~Diws  190 (309)
T cd07872         116 GLAYCH---RRKVLHRDLKPQNLLINERGELKLADFGLARAKSVPTKT--YSNEVVTLWYRPPDVLLGSSEYSTQIDMWG  190 (309)
T ss_pred             HHHHHH---HCCeecCCCCHHHEEECCCCCEEECccccceecCCCccc--cccccccccccCCHHHhCCCCCCcHHHHHH
Confidence            999999   999999999999999999999999999998754332211  122357889999998865 45789999999


Q ss_pred             HHHHHHHHHhcCccccc
Q 044022          156 FGAFLFELLAGRIHIWD  172 (241)
Q Consensus       156 ~G~~~~~~~~g~~p~~~  172 (241)
                      ||+++|+|++|+.||..
T Consensus       191 lG~il~el~tg~~pf~~  207 (309)
T cd07872         191 VGCIFFEMASGRPLFPG  207 (309)
T ss_pred             HHHHHHHHHhCCCCCCC
Confidence            99999999999999954

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=100.00  E-value=8.8e-36  Score=235.99  Aligned_cols=203  Identities=20%  Similarity=0.333  Sum_probs=157.5

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ..+.|.+|++++++++|+||+++++++...+..++|+||+++++|.+++....     .....++.+++.|++|||   +
T Consensus        42 ~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH---~  118 (256)
T cd05059          42 SEDDFIEEAKVMMKLSHPNLVQLYGVCTKQRPIFIVTEYMANGCLLNYLRERKGKLGTEWLLDMCSDVCEAMEYLE---S  118 (256)
T ss_pred             CHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCceEEEEecCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            34578899999999999999999999999999999999999999999986532     145789999999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh-
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA-  165 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~-  165 (241)
                      .+++|+||||+||+++.++.++|+|||.+........... ....++..|+|||.+.+..++.++|+||||+++|++++ 
T Consensus       119 ~~i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~~~~~~~~~-~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~il~~l~~~  197 (256)
T cd05059         119 NGFIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQYTSS-QGTKFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSE  197 (256)
T ss_pred             CCcccccccHhhEEECCCCcEEECCcccceeccccccccc-CCCCCCccccCHHHhccCCCCchhhHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999876543221111 11123457999999998889999999999999999998 


Q ss_pred             cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          166 GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       166 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      |..||.....         .+...... ...  ....   ..        ..+..+.+++.+||..+|++|||+.|
T Consensus       198 g~~p~~~~~~---------~~~~~~~~-~~~--~~~~---~~--------~~~~~~~~li~~cl~~~p~~Rpt~~~  250 (256)
T cd05059         198 GKMPYERFSN---------SEVVESVS-AGY--RLYR---PK--------LAPTEVYTIMYSCWHEKPEDRPAFKK  250 (256)
T ss_pred             CCCCCCCCCH---------HHHHHHHH-cCC--cCCC---CC--------CCCHHHHHHHHHHhcCChhhCcCHHH
Confidence            8999854211         11111111 110  0000   01        12357899999999999999999864

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=100.00  E-value=9.7e-36  Score=236.32  Aligned_cols=204  Identities=22%  Similarity=0.288  Sum_probs=153.5

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeee-eCCcceEEEEecCCCCHHHhhcCCCc-----hHHHHHHHHHHHhchhhcCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCL-QTPIPILVFQSVEYGTLRDCIFGAPL-----PRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~lv~e~~~~~sL~~~l~~~~~-----~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ..+.+.+|+.+++.++||||+++++++. .++..++++||+.+++|.+++.....     ..+.++.+++.||.|||   
T Consensus        39 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---  115 (262)
T cd05058          39 EVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLPYMKHGDLRNFIRSETHNPTVKDLIGFGLQVAKGMEYLA---  115 (262)
T ss_pred             HHHHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            4567889999999999999999999776 45568999999999999999865321     35678899999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcc--eeecccccCCCccCcccccccCCCcchhhHHHHHHHHHH
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH--ITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL  163 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~--~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~  163 (241)
                      +.+++|+||||+||+++.++.++|+|||.+.........  .......++..|+|||++.+..++.++||||||+++|+|
T Consensus       116 ~~~i~H~dlk~~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el  195 (262)
T cd05058         116 SKKFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSVHNHTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWEL  195 (262)
T ss_pred             hCCccccccCcceEEEcCCCcEEECCccccccccCCcceeecccccCcCCccccChhHhccCccchHHHHHHHHHHHHHH
Confidence            899999999999999999999999999998754332111  111123456789999999888899999999999999999


Q ss_pred             Hhc-CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          164 LAG-RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       164 ~~g-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ++| .+||...         ...+....... +....     ...        ..+..+.+++.+||..+|++|||+.|
T Consensus       196 ~~~~~~~~~~~---------~~~~~~~~~~~-~~~~~-----~~~--------~~~~~~~~li~~cl~~~p~~Rp~~~~  251 (262)
T cd05058         196 MTRGAPPYPDV---------DSFDITVYLLQ-GRRLL-----QPE--------YCPDPLYEVMLSCWHPKPEMRPTFSE  251 (262)
T ss_pred             HcCCCCCCCCC---------CHHHHHHHHhc-CCCCC-----CCC--------cCCHHHHHHHHHHcCCChhhCCCHHH
Confidence            995 5555331         11111111111 11000     001        12256889999999999999999864

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=100.00  E-value=9.7e-36  Score=236.21  Aligned_cols=202  Identities=23%  Similarity=0.346  Sum_probs=159.5

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC------chHHHHHHHHHHHhchhhcCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP------LPRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~------~~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ....+.+|+++++.++|+||+++++++......++||||+++++|.+++....      .....++.+++.|+.|||   
T Consensus        45 ~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH---  121 (261)
T cd05148          45 KQQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYIITELMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLE---  121 (261)
T ss_pred             hHHHHHHHHHHHhcCCCcchhheeeeEecCCCeEEEEeecccCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            45678899999999999999999999999999999999999999999987532      146789999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~  165 (241)
                      +.+++|+||+|+||+++.++.++|+|||.+..........  ....++..|+|||++....++.++|+||||+++|++++
T Consensus       122 ~~~i~h~dl~~~nilv~~~~~~kl~d~g~~~~~~~~~~~~--~~~~~~~~~~~PE~~~~~~~~~~~DiwslG~~l~~l~~  199 (261)
T cd05148         122 EQNSIHRDLAARNILVGEDLVCKVADFGLARLIKEDVYLS--SDKKIPYKWTAPEAASHGTFSTKSDVWSFGILLYEMFT  199 (261)
T ss_pred             HCCeeccccCcceEEEcCCceEEEccccchhhcCCccccc--cCCCCceEecCHHHHccCCCCchhhHHHHHHHHHHHHc
Confidence            8999999999999999999999999999987654332211  12345677999999988889999999999999999998


Q ss_pred             -cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          166 -GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       166 -g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                       |+.||....         ..+.......... .  ..   ..        ..+..+.+++.+||..||++|||+.+
T Consensus       200 ~g~~p~~~~~---------~~~~~~~~~~~~~-~--~~---~~--------~~~~~~~~~i~~~l~~~p~~Rpt~~~  253 (261)
T cd05148         200 YGQVPYPGMN---------NHEVYDQITAGYR-M--PC---PA--------KCPQEIYKIMLECWAAEPEDRPSFKA  253 (261)
T ss_pred             CCCCCCCcCC---------HHHHHHHHHhCCc-C--CC---CC--------CCCHHHHHHHHHHcCCCchhCcCHHH
Confidence             899985421         1112222211111 0  00   01        22367889999999999999999864

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=100.00  E-value=2.2e-36  Score=247.49  Aligned_cols=200  Identities=22%  Similarity=0.218  Sum_probs=155.2

Q ss_pred             cHHHHHHHHH-HHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNIT-YAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~-~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ....+.+|.. +++.++||||+++++++...+..++||||+++|+|..++.....    ....++.||+.||.|||   +
T Consensus        38 ~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH---~  114 (325)
T cd05604          38 EQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVNGGELFFHLQRERSFPEPRARFYAAEIASALGYLH---S  114 (325)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEEcCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            3445566655 46778999999999999999999999999999999988765422    46678999999999999   9


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhc
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      .+++||||||+|||++.++.++|+|||++........  ......|++.|+|||++.+..++.++||||||+++|+|++|
T Consensus       115 ~givH~Dlkp~NIll~~~~~~kL~DfG~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G  192 (325)
T cd05604         115 INIVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQSD--TTTTFCGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYG  192 (325)
T ss_pred             CCeeecCCCHHHeEECCCCCEEEeecCCcccCCCCCC--CcccccCChhhCCHHHHcCCCCCCcCccccccceehhhhcC
Confidence            9999999999999999999999999999864322111  12334689999999999988999999999999999999999


Q ss_pred             CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          167 RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                      ..||....         ..+....... ...      .+.+.        .+..+.+++.+||+.+|.+||++.
T Consensus       193 ~~pf~~~~---------~~~~~~~~~~-~~~------~~~~~--------~~~~~~~ll~~ll~~~p~~R~~~~  242 (325)
T cd05604         193 LPPFYCRD---------VAEMYDNILH-KPL------VLRPG--------ASLTAWSILEELLEKDRQRRLGAK  242 (325)
T ss_pred             CCCCCCCC---------HHHHHHHHHc-CCc------cCCCC--------CCHHHHHHHHHHhccCHHhcCCCC
Confidence            99996521         1111111111 100      01111        224678999999999999999975

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=100.00  E-value=5.9e-36  Score=244.10  Aligned_cols=157  Identities=21%  Similarity=0.214  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHHHhcCCCcccceeeeeee--CCcceEEEEecCCCCHHHhhcCCC----------c---hHHHHHHHHHHH
Q 044022           13 YGSCINNITYAAQMSHNHILKRIGCCLQ--TPIPILVFQSVEYGTLRDCIFGAP----------L---PRLKIASDIVNS   77 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~--~~~~~lv~e~~~~~sL~~~l~~~~----------~---~~~~~~~~i~~~   77 (241)
                      ...+.+|++++++++||||+++++++..  ....++++||+. ++|.+++....          .   ....++.|++.|
T Consensus        42 ~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~a  120 (317)
T cd07868          42 SMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDG  120 (317)
T ss_pred             cHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEEeccC-CCHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHH
Confidence            4567899999999999999999999864  446789999996 68888764221          1   246789999999


Q ss_pred             hchhhcCCCCCceeccCCCCCeee----cCCCCeEEeeccCceecCCCCc-ceeecccccCCCccCccccccc-CCCcch
Q 044022           78 LAYLHFGFPRPIVLRNFKTQNILF----NEENVAKWFDFLLSISIPEGET-HITTDRVIGTRGYSAPEYISIC-VLNEKS  151 (241)
Q Consensus        78 l~~lh~~~~~~ivh~dl~~~nil~----~~~~~~~l~df~~~~~~~~~~~-~~~~~~~~~~~~~~aPE~~~~~-~~~~~~  151 (241)
                      |.|||   +.+++||||||+|||+    +..+.+||+|||++........ ........+|+.|+|||++.+. .++.++
T Consensus       121 l~~LH---~~~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~  197 (317)
T cd07868         121 IHYLH---ANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAI  197 (317)
T ss_pred             HHHHH---hCCEEcCCCCHHHEEEecCCCCcCcEEEeecCceeccCCCCccccccCCccccccccCCHHHcCCCCcCchh
Confidence            99999   9999999999999999    4567899999999976543221 1122345678999999998764 578999


Q ss_pred             hhHHHHHHHHHHHhcCcccccc
Q 044022          152 NVFSFGAFLFELLAGRIHIWDL  173 (241)
Q Consensus       152 Di~s~G~~~~~~~~g~~p~~~~  173 (241)
                      ||||+||++|+|++|++||...
T Consensus       198 DiwslG~il~el~~g~~~f~~~  219 (317)
T cd07868         198 DIWAIGCIFAELLTSEPIFHCR  219 (317)
T ss_pred             hHHHHHHHHHHHHhCCCCccCC
Confidence            9999999999999999999653

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=7.6e-37  Score=254.16  Aligned_cols=202  Identities=18%  Similarity=0.276  Sum_probs=161.2

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCc--ceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPI--PILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~--~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ..++|..|+.+|+.|+||||++++.+|.....  .-+|+|++..|+|..|+++...    ....|++||+.||.|||+. 
T Consensus        84 ~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~iTEL~TSGtLr~Y~kk~~~vn~kaik~W~RQILkGL~yLHs~-  162 (632)
T KOG0584|consen   84 ELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFITELFTSGTLREYRKKHRRVNIKAIKSWCRQILKGLVYLHSQ-  162 (632)
T ss_pred             HHHHHHHHHHHHccCCCCceeeeeeheecCCCceeeeeeecccCCcHHHHHHHhccCCHHHHHHHHHHHHHHhhhhhcC-
Confidence            45889999999999999999999999987654  7799999999999999988754    3467999999999999975 


Q ss_pred             CCCceeccCCCCCeeecCC-CCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHH
Q 044022           86 PRPIVLRNFKTQNILFNEE-NVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~-~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~  164 (241)
                      ..+|+|||||.+|||++.+ |.+||||+|+|........    ..++|||.|||||..- ..|+..+||||||..++||+
T Consensus       163 ~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl~r~s~a----ksvIGTPEFMAPEmYE-E~YnE~VDVYaFGMCmLEMv  237 (632)
T KOG0584|consen  163 DPPIIHRDLKCDNIFVNGNLGEVKIGDLGLATLLRKSHA----KSVIGTPEFMAPEMYE-ENYNELVDVYAFGMCMLEMV  237 (632)
T ss_pred             CCCccccccccceEEEcCCcCceeecchhHHHHhhcccc----ceeccCccccChHHHh-hhcchhhhhhhhhHHHHHHH
Confidence            5689999999999999865 8999999999987654432    3468999999999988 78899999999999999999


Q ss_pred             hcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          165 AGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       165 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      |+..||....+.     ..+..-+-...+...+..+.+                +.+++||.+|+.. .+.|||+.|
T Consensus       238 T~eYPYsEC~n~-----AQIYKKV~SGiKP~sl~kV~d----------------Pevr~fIekCl~~-~~~R~sa~e  292 (632)
T KOG0584|consen  238 TSEYPYSECTNP-----AQIYKKVTSGIKPAALSKVKD----------------PEVREFIEKCLAT-KSERLSAKE  292 (632)
T ss_pred             hccCChhhhCCH-----HHHHHHHHcCCCHHHhhccCC----------------HHHHHHHHHHhcC-chhccCHHH
Confidence            999999542221     111111111111222222222                5789999999999 999999854

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=9.3e-37  Score=254.51  Aligned_cols=159  Identities=18%  Similarity=0.212  Sum_probs=134.7

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ...+.+.+|++++++++||||+++++++...+..|+||||+++|+|.+++.....    ....++.|++.||.|||   +
T Consensus        43 ~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~ql~~aL~~LH---~  119 (377)
T cd05629          43 DQLAHVKAERDVLAESDSPWVVSLYYSFQDAQYLYLIMEFLPGGDLMTMLIKYDTFSEDVTRFYMAECVLAIEAVH---K  119 (377)
T ss_pred             HHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCeeEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---h
Confidence            3456788999999999999999999999999999999999999999999865432    35568899999999999   9


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCc------------c------------------------------
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGET------------H------------------------------  124 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~------------~------------------------------  124 (241)
                      .+++||||||+|||++.++.++|+|||++........            .                              
T Consensus       120 ~givHrDlkp~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (377)
T cd05629         120 LGFIHRDIKPDNILIDRGGHIKLSDFGLSTGFHKQHDSAYYQKLLQGKSNKNRIDNRNSVAVDSINLTMSSKDQIATWKK  199 (377)
T ss_pred             CCeeccCCCHHHEEECCCCCEEEeecccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhh
Confidence            9999999999999999999999999998853211000            0                              


Q ss_pred             ---eeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcCccccc
Q 044022          125 ---ITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       125 ---~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~~p~~~  172 (241)
                         .......||+.|+|||++.+..++.++|||||||++|+|++|..||..
T Consensus       200 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~  250 (377)
T cd05629         200 NRRLMAYSTVGTPDYIAPEIFLQQGYGQECDWWSLGAIMFECLIGWPPFCS  250 (377)
T ss_pred             cccccccccCCCccccCHHHHccCCCCCceeeEecchhhhhhhcCCCCCCC
Confidence               000124689999999999988899999999999999999999999954

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-36  Score=255.81  Aligned_cols=213  Identities=21%  Similarity=0.317  Sum_probs=171.1

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc------hHHHHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL------PRLKIASDI   74 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~------~~~~~~~~i   74 (241)
                      ||....+.-....++|++|+.+|.+|+|+|++++||+... ....||+|+++.|||.++|.+...      ..-.++.||
T Consensus       143 VKclr~d~l~~~mddflrEas~M~~L~H~hliRLyGvVl~-qp~mMV~ELaplGSLldrLrka~~~~llv~~Lcdya~Qi  221 (1039)
T KOG0199|consen  143 VKCLRDDSLNAIMDDFLREASHMLKLQHPHLIRLYGVVLD-QPAMMVFELAPLGSLLDRLRKAKKAILLVSRLCDYAMQI  221 (1039)
T ss_pred             EEeccCCccchhHHHHHHHHHHHHhccCcceeEEeeeecc-chhhHHhhhcccchHHHHHhhccccceeHHHHHHHHHHH
Confidence            4556555554589999999999999999999999999987 557899999999999999987321      234689999


Q ss_pred             HHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCC-cceeecccccCCCccCcccccccCCCcchhh
Q 044022           75 VNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGE-THITTDRVIGTRGYSAPEYISICVLNEKSNV  153 (241)
Q Consensus        75 ~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~-~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di  153 (241)
                      +.|+.||.   .+++|||||.++|+|+.....+||+|||+.+.+.... .........-+..|+|||.+....++.+||+
T Consensus       222 A~aM~YLe---skrlvHRDLAARNlllasprtVKI~DFGLmRaLg~ned~Yvm~p~rkvPfAWCaPEsLrh~kFShaSDv  298 (1039)
T KOG0199|consen  222 AKAMQYLE---SKRLVHRDLAARNLLLASPRTVKICDFGLMRALGENEDMYVMAPQRKVPFAWCAPESLRHRKFSHASDV  298 (1039)
T ss_pred             HHHHHHHh---hhhhhhhhhhhhhheecccceeeeecccceeccCCCCcceEecCCCcCcccccCHhHhccccccccchh
Confidence            99999999   9999999999999999999999999999999876542 2233333445678999999999999999999


Q ss_pred             HHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCC
Q 044022          154 FSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNS  232 (241)
Q Consensus       154 ~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~  232 (241)
                      |+|||.+|||++ |..||-.         ......+.... .+.....+             ..+++++.+++++||..+
T Consensus       299 WmyGVTiWEMFtyGEePW~G---------~~g~qIL~~iD-~~erLpRP-------------k~csedIY~imk~cWah~  355 (1039)
T KOG0199|consen  299 WMYGVTIWEMFTYGEEPWVG---------CRGIQILKNID-AGERLPRP-------------KYCSEDIYQIMKNCWAHN  355 (1039)
T ss_pred             hhhhhhHHhhhccCCCCCCC---------CCHHHHHHhcc-ccccCCCC-------------CCChHHHHHHHHHhccCC
Confidence            999999999998 7888843         22233333333 22222111             256689999999999999


Q ss_pred             CCCCCCCC
Q 044022          233 PEDRPTMV  240 (241)
Q Consensus       233 p~~Rpt~~  240 (241)
                      |.+|||+.
T Consensus       356 paDRptFs  363 (1039)
T KOG0199|consen  356 PADRPTFS  363 (1039)
T ss_pred             ccccccHH
Confidence            99999974

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=5.1e-36  Score=240.84  Aligned_cols=223  Identities=22%  Similarity=0.245  Sum_probs=162.5

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeC--CcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHH
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQT--PIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDI   74 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~--~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i   74 (241)
                      |.+...........+.+|++++++++|||++++.+++...  ...++||||+++++|.+++....     ..+..++.++
T Consensus        39 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~i~~~i  118 (284)
T cd05079          39 KSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPRNKNKINLKQQLKYAVQI  118 (284)
T ss_pred             EEcCccccHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCCceEEEEEccCCCCHHHHHHhccCCCCHHHHHHHHHHH
Confidence            4444444444567899999999999999999999998765  46789999999999999986532     2467899999


Q ss_pred             HHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcc-eeecccccCCCccCcccccccCCCcchhh
Q 044022           75 VNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH-ITTDRVIGTRGYSAPEYISICVLNEKSNV  153 (241)
Q Consensus        75 ~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~-~~~~~~~~~~~~~aPE~~~~~~~~~~~Di  153 (241)
                      +.||.|||   +.+++|+||||+||+++.++.++|+|||.+......... .......++..|+|||++.+..++.++||
T Consensus       119 ~~aL~~lH---~~gi~H~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di  195 (284)
T cd05079         119 CKGMDYLG---SRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDLDSPVFWYAPECLIQSKFYIASDV  195 (284)
T ss_pred             HHHHHHHH---HCCeeecccchheEEEcCCCCEEECCCccccccccCccceeecCCCCCCccccCHHHhccCCCCccccc
Confidence            99999999   999999999999999999999999999998765433221 11123346677999999988889999999


Q ss_pred             HHHHHHHHHHHhcCcccccccccC------CCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHH
Q 044022          154 FSFGAFLFELLAGRIHIWDLLKDT------HDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLE  227 (241)
Q Consensus       154 ~s~G~~~~~~~~g~~p~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  227 (241)
                      ||||+++|+++++..|........      ............. ...+.....     ..        ..+..+.+|+.+
T Consensus       196 ~slG~il~ellt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~--------~~~~~~~~li~~  261 (284)
T cd05079         196 WSFGVTLYELLTYCDSESSPMTLFLKMIGPTHGQMTVTRLVRV-LEEGKRLPR-----PP--------NCPEEVYQLMRK  261 (284)
T ss_pred             hhhhhhhhhhhcCCCCCccccchhhhhcccccccccHHHHHHH-HHcCccCCC-----CC--------CCCHHHHHHHHH
Confidence            999999999999877653321100      0000011111111 111111100     11        233678999999


Q ss_pred             hccCCCCCCCCCCC
Q 044022          228 CVNNSPEDRPTMVD  241 (241)
Q Consensus       228 cl~~~p~~Rpt~~e  241 (241)
                      ||+.||++|||++|
T Consensus       262 ~l~~~p~~Rpt~~~  275 (284)
T cd05079         262 CWEFQPSKRTTFQN  275 (284)
T ss_pred             HccCCcccCcCHHH
Confidence            99999999999864

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>PHA03211 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=5.6e-36  Score=253.86  Aligned_cols=156  Identities=19%  Similarity=0.246  Sum_probs=132.9

Q ss_pred             HHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHHHhchhhcCCCC
Q 044022           13 YGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ..++.+|++++++|+|+|||++++++..++..++|+|++. ++|.+++....     ..++.++.|++.||.|||   +.
T Consensus       204 ~~~~~~E~~iL~~L~HpnIv~l~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~yLH---~~  279 (461)
T PHA03211        204 YASSVHEARLLRRLSHPAVLALLDVRVVGGLTCLVLPKYR-SDLYTYLGARLRPLGLAQVTAVARQLLSAIDYIH---GE  279 (461)
T ss_pred             ccCHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEEccC-CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HC
Confidence            3457799999999999999999999999999999999995 78888875432     246789999999999999   89


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcC
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR  167 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~  167 (241)
                      +|+||||||+|||++.++.++|+|||++................||..|+|||++.+..++.++|||||||++|||++|.
T Consensus       280 gIvHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~sDvwSlGviL~El~~g~  359 (461)
T PHA03211        280 GIIHRDIKTENVLVNGPEDICLGDFGAACFARGSWSTPFHYGIAGTVDTNAPEVLAGDPYTPSVDIWSAGLVIFEAAVHT  359 (461)
T ss_pred             CEEECcCCHHHEEECCCCCEEEcccCCceecccccccccccccCCCcCCcCHHHHcCCCCCchHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999987654332221222346899999999999889999999999999999999988


Q ss_pred             ccccc
Q 044022          168 IHIWD  172 (241)
Q Consensus       168 ~p~~~  172 (241)
                      .|+..
T Consensus       360 ~~lf~  364 (461)
T PHA03211        360 ASLFS  364 (461)
T ss_pred             CCccc
Confidence            76644

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=100.00  E-value=1.4e-35  Score=236.56  Aligned_cols=212  Identities=20%  Similarity=0.266  Sum_probs=160.9

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHH
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVN   76 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~   76 (241)
                      |.+.........+.+.+|++++++++||||+++++++.. +..++|+||+++++|.+++....     ..+..++.+++.
T Consensus        40 k~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~  118 (270)
T cd05056          40 KTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLIGVITE-NPVWIVMELAPLGELRSYLQVNKYSLDLASLILYSYQLST  118 (270)
T ss_pred             EecCCcCCHHHHHHHHHHHHHHHhCCCCchhceeEEEcC-CCcEEEEEcCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence            444444434456689999999999999999999998865 45789999999999999986532     146778999999


Q ss_pred             HhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHH
Q 044022           77 SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSF  156 (241)
Q Consensus        77 ~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~  156 (241)
                      ||.|||   +.+++|+||||+||+++..+.++++|||.+........... ....++..|+|||.+....++.++|||||
T Consensus       119 ~l~~lH---~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~Di~sl  194 (270)
T cd05056         119 ALAYLE---SKRFVHRDIAARNVLVSSPDCVKLGDFGLSRYLEDESYYKA-SKGKLPIKWMAPESINFRRFTSASDVWMF  194 (270)
T ss_pred             HHHHHH---hCCeeccccChheEEEecCCCeEEccCceeeecccccceec-CCCCccccccChhhhccCCCCchhhhHHH
Confidence            999999   89999999999999999999999999999876654322221 22234567999999988889999999999


Q ss_pred             HHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCC
Q 044022          157 GAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPED  235 (241)
Q Consensus       157 G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~  235 (241)
                      |+++|++++ |..||.....         .+..... ..+....     ...        ..+..+.+++.+||..+|++
T Consensus       195 G~il~el~~~g~~pf~~~~~---------~~~~~~~-~~~~~~~-----~~~--------~~~~~~~~li~~~l~~~P~~  251 (270)
T cd05056         195 GVCMWEILMLGVKPFQGVKN---------NDVIGRI-ENGERLP-----MPP--------NCPPTLYSLMTKCWAYDPSK  251 (270)
T ss_pred             HHHHHHHHHcCCCCCCCCCH---------HHHHHHH-HcCCcCC-----CCC--------CCCHHHHHHHHHHcCCChhh
Confidence            999999986 9999854211         1111111 1111111     111        22357899999999999999


Q ss_pred             CCCCCC
Q 044022          236 RPTMVD  241 (241)
Q Consensus       236 Rpt~~e  241 (241)
                      |||+.|
T Consensus       252 Rpt~~~  257 (270)
T cd05056         252 RPRFTE  257 (270)
T ss_pred             CcCHHH
Confidence            999853

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=100.00  E-value=7.1e-36  Score=239.44  Aligned_cols=206  Identities=21%  Similarity=0.313  Sum_probs=158.6

Q ss_pred             cccHHHHHHHHHHHHhcCCCcccceeeeeee-CCcceEEEEecCCCCHHHhhcCCC---------c---hHHHHHHHHHH
Q 044022           10 RHTYGSCINNITYAAQMSHNHILKRIGCCLQ-TPIPILVFQSVEYGTLRDCIFGAP---------L---PRLKIASDIVN   76 (241)
Q Consensus        10 ~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~lv~e~~~~~sL~~~l~~~~---------~---~~~~~~~~i~~   76 (241)
                      ......+.+|++++++++|+||+++++++.. ....+++++|+++++|.+++....         .   ....++.+++.
T Consensus        49 ~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~  128 (280)
T cd05043          49 EIQVTLLLQESCLLYGLSHQNILPILHVCIEDGEPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIAC  128 (280)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCCEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHH
Confidence            3446778999999999999999999998776 467899999999999999985421         1   35788999999


Q ss_pred             HhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHH
Q 044022           77 SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSF  156 (241)
Q Consensus        77 ~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~  156 (241)
                      ||.|||   +.+++|+||+|+||+++.++.++|+|||+++...............++..|+|||++.+..++.++|||||
T Consensus       129 ~l~~LH---~~~i~H~di~p~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~sl  205 (280)
T cd05043         129 GMSYLH---KRGVIHKDIAARNCVIDEELQVKITDNALSRDLFPMDYHCLGDNENRPVKWMALESLVNKEYSSASDVWSF  205 (280)
T ss_pred             HHHHHH---HCCEeecccCHhhEEEcCCCcEEECCCCCcccccCCceEEeCCCCCcchhccCHHHHhcCCCCchhhHHHh
Confidence            999999   99999999999999999999999999999876543332222223345677999999988889999999999


Q ss_pred             HHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCC
Q 044022          157 GAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPED  235 (241)
Q Consensus       157 G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~  235 (241)
                      |+++|++++ |+.||.....         .+. .........  ...   ..        ..+..+.+++.+||..||++
T Consensus       206 G~~l~el~~~g~~p~~~~~~---------~~~-~~~~~~~~~--~~~---~~--------~~~~~~~~li~~~l~~~p~~  262 (280)
T cd05043         206 GVLLWELMTLGQTPYVEIDP---------FEM-AAYLKDGYR--LAQ---PI--------NCPDELFAVMACCWALDPEE  262 (280)
T ss_pred             HHHHHHHhcCCCCCcCcCCH---------HHH-HHHHHcCCC--CCC---CC--------cCCHHHHHHHHHHcCCChhh
Confidence            999999999 9999965211         111 111111110  000   11        12357899999999999999


Q ss_pred             CCCCCC
Q 044022          236 RPTMVD  241 (241)
Q Consensus       236 Rpt~~e  241 (241)
                      |||+.|
T Consensus       263 Rps~~~  268 (280)
T cd05043         263 RPSFSQ  268 (280)
T ss_pred             CCCHHH
Confidence            999854

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=1.1e-35  Score=237.93  Aligned_cols=196  Identities=23%  Similarity=0.360  Sum_probs=150.8

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ...+|.+|+.++++++||||+++++++...+..++||||+++|+|..++....     ..++.++.|++.||.|||   +
T Consensus        59 ~~~~~~~~~~~~~~l~h~niv~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH---~  135 (274)
T cd05076          59 IALAFFETASLMSQVSHIHLAFVHGVCVRGSENIMVEEFVEHGPLDVCLRKEKGRVPVAWKITVAQQLASALSYLE---D  135 (274)
T ss_pred             HHHHHHHHHHHHhcCCCCCeeeEEEEEEeCCceEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---c
Confidence            34578899999999999999999999999999999999999999999886532     246789999999999999   8


Q ss_pred             CCceeccCCCCCeeecCCC-------CeEEeeccCceecCCCCcceeecccccCCCccCcccccc-cCCCcchhhHHHHH
Q 044022           87 RPIVLRNFKTQNILFNEEN-------VAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI-CVLNEKSNVFSFGA  158 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~-------~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~  158 (241)
                      ++++||||||+||+++..+       .++++|||.+......      ....++..|+|||.+.+ ..++.++|+||||+
T Consensus       136 ~~iiH~dlkp~Nill~~~~~~~~~~~~~kl~d~g~~~~~~~~------~~~~~~~~~~aPe~~~~~~~~~~~~Dv~slG~  209 (274)
T cd05076         136 KNLVHGNVCAKNILLARLGLAEGTSPFIKLSDPGVSFTALSR------EERVERIPWIAPECVPGGNSLSTAADKWSFGT  209 (274)
T ss_pred             CCccCCCCCcccEEEeccCcccCccceeeecCCccccccccc------cccccCCcccCchhhcCCCCCCcHHHHHHHHH
Confidence            9999999999999997643       4799999987543222      12346778999998865 46789999999999


Q ss_pred             HHHHHH-hcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCC
Q 044022          159 FLFELL-AGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRP  237 (241)
Q Consensus       159 ~~~~~~-~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rp  237 (241)
                      ++|+++ +|..||......         +. .......  ...+     ..        ....+.+++.+||+.+|++||
T Consensus       210 ~l~el~~~g~~p~~~~~~~---------~~-~~~~~~~--~~~~-----~~--------~~~~~~~li~~cl~~~p~~Rp  264 (274)
T cd05076         210 TLLEICFDGEVPLKERTPS---------EK-ERFYEKK--HRLP-----EP--------SCKELATLISQCLTYEPTQRP  264 (274)
T ss_pred             HHHHHHhCCCCCccccChH---------HH-HHHHHhc--cCCC-----CC--------CChHHHHHHHHHcccChhhCc
Confidence            999984 689998542111         00 1111100  0001     11        113588999999999999999


Q ss_pred             CCCC
Q 044022          238 TMVD  241 (241)
Q Consensus       238 t~~e  241 (241)
                      |+.|
T Consensus       265 s~~~  268 (274)
T cd05076         265 SFRT  268 (274)
T ss_pred             CHHH
Confidence            9864

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=4.5e-36  Score=247.03  Aligned_cols=204  Identities=23%  Similarity=0.310  Sum_probs=165.9

Q ss_pred             cHHHHHHHHHHHHhcC-CCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC-C--chHHHHHHHHHHHhchhhcCCCC
Q 044022           12 TYGSCINNITYAAQMS-HNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA-P--LPRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~-h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~-~--~~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ....+.+|+++|+++. |||||.++++|+.....++|||++.||.|.+.+... .  .....++.+++.+++|||   +.
T Consensus        78 ~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~~~~lvmEL~~GGeLfd~i~~~~~sE~da~~~~~~il~av~~lH---~~  154 (382)
T KOG0032|consen   78 DREDVRREVAILQQLSGHPNIVQLKDAFEDPDSVYLVMELCEGGELFDRIVKKHYSERDAAGIIRQILEAVKYLH---SL  154 (382)
T ss_pred             cHHHHHHHHHHHHhccCCCCEEEEEEEEEcCCeEEEEEEecCCchHHHHHHHccCCHHHHHHHHHHHHHHHHHHH---hC
Confidence            4578899999999998 999999999999999999999999999999998764 2  246789999999999999   89


Q ss_pred             CceeccCCCCCeeecCC----CCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHH
Q 044022           88 PIVLRNFKTQNILFNEE----NVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL  163 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~----~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~  163 (241)
                      +++||||||+|+|+...    +.++++|||++.......   .....+||+.|+|||++....++..+||||+|+++|.|
T Consensus       155 gvvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~~~~~~~---~~~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~yiL  231 (382)
T KOG0032|consen  155 GVVHRDLKPENLLLASKDEGSGRIKLIDFGLAKFIKPGE---RLHTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVILYIL  231 (382)
T ss_pred             CceeccCCHHHeeeccccCCCCcEEEeeCCCceEccCCc---eEeeecCCccccCchhhcCCCCCcccchhHHHHHHHHH
Confidence            99999999999999644    479999999998877622   23456899999999999999999999999999999999


Q ss_pred             HhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          164 LAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       164 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ++|.+||.......         ... ....+.+ .+..+.         ....+..+.++++.|+..||.+|+|+.+
T Consensus       232 L~G~~PF~~~~~~~---------~~~-~i~~~~~-~f~~~~---------w~~is~~akd~i~~ll~~dp~~R~ta~~  289 (382)
T KOG0032|consen  232 LSGVPPFWGETEFE---------IFL-AILRGDF-DFTSEP---------WDDISESAKDFIRKLLEFDPRKRLTAAQ  289 (382)
T ss_pred             hhCCCCCcCCChhH---------HHH-HHHcCCC-CCCCCC---------ccccCHHHHHHHHHhcccCcccCCCHHH
Confidence            99999997632221         011 1111211 112221         1244578899999999999999999853

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=100.00  E-value=3e-36  Score=250.27  Aligned_cols=158  Identities=16%  Similarity=0.219  Sum_probs=135.8

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ....+.+|+.++.+++|+||+++++.+......++||||+++|+|.+++.....    ....++.|++.||.|||   ++
T Consensus        44 ~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH---~~  120 (363)
T cd05628          44 QVGHIRAERDILVEADSLWVVKMFYSFQDKLNLYLIMEFLPGGDMMTLLMKKDTLTEEETQFYIAETVLAIDSIH---QL  120 (363)
T ss_pred             HHHHHHHHHHHHHhCCCCCcceEEEEEecCCeEEEEEcCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hC
Confidence            345688899999999999999999999999999999999999999999865422    46778999999999999   99


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCCc---------------------------------ceeecccccCC
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGET---------------------------------HITTDRVIGTR  134 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~---------------------------------~~~~~~~~~~~  134 (241)
                      +|+||||||+|||++.++.++|+|||++........                                 .......+||+
T Consensus       121 givHrDlKp~NILi~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~  200 (363)
T cd05628         121 GFIHRDIKPDNLLLDSKGHVKLSDFGLCTGLKKAHRTEFYRNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVGTP  200 (363)
T ss_pred             CeEecCCCHHHeEECCCCCEEEeeccCcccccccccccccccccccccccccccccccccccchhhhccccccccccCCc
Confidence            999999999999999999999999999865432100                                 00012346899


Q ss_pred             CccCcccccccCCCcchhhHHHHHHHHHHHhcCccccc
Q 044022          135 GYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       135 ~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~~p~~~  172 (241)
                      .|+|||++.+..++.++|||||||++|+|++|+.||..
T Consensus       201 ~Y~aPE~~~~~~~~~~~DvwSlGvil~ell~G~~Pf~~  238 (363)
T cd05628         201 DYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCS  238 (363)
T ss_pred             cccCHHHHcCCCCCCchhhhhhHHHHHHHHhCCCCCCC
Confidence            99999999988999999999999999999999999964

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=100.00  E-value=4.4e-36  Score=241.82  Aligned_cols=216  Identities=19%  Similarity=0.216  Sum_probs=153.4

Q ss_pred             HHHHHHHHHHHHhc---CCCcccceeeeeee-----CCcceEEEEecCCCCHHHhhcCCC------chHHHHHHHHHHHh
Q 044022           13 YGSCINNITYAAQM---SHNHILKRIGCCLQ-----TPIPILVFQSVEYGTLRDCIFGAP------LPRLKIASDIVNSL   78 (241)
Q Consensus        13 ~~~~~~e~~~l~~l---~h~~iv~~~~~~~~-----~~~~~lv~e~~~~~sL~~~l~~~~------~~~~~~~~~i~~~l   78 (241)
                      ...+.+|+.+++.+   +||||+++++++..     ....++|+||+. ++|.+++....      .....++.|++.||
T Consensus        45 ~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL  123 (290)
T cd07862          45 PLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGL  123 (290)
T ss_pred             hHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCCCCcEEEEEccCC-CCHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence            44567788887776   69999999999862     346899999996 69999886432      14678999999999


Q ss_pred             chhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHH
Q 044022           79 AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGA  158 (241)
Q Consensus        79 ~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~  158 (241)
                      .|||   +.+++||||||+|||++.++.++|+|||.+.......   ......+++.|+|||.+.+..++.++||||||+
T Consensus       124 ~~lH---~~~iiH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~  197 (290)
T cd07862         124 DFLH---SHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQM---ALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGC  197 (290)
T ss_pred             HHHH---HCCeeeCCCCHHHEEEcCCCCEEEccccceEeccCCc---ccccccccccccChHHHhCCCCCCccchHHHHH
Confidence            9999   9999999999999999999999999999987654331   123346889999999998888999999999999


Q ss_pred             HHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCC------CCCccccCCCchh---HHHHHHHHHHHHHHhc
Q 044022          159 FLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGI------PAPIIVQDIPCIE---KEQQLHASAQLTLECV  229 (241)
Q Consensus       159 ~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~~l~~~cl  229 (241)
                      ++|+|++|++||......     ......... .........      .............   ....++.+.+++.+||
T Consensus       198 il~el~~g~~~f~~~~~~-----~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l  271 (290)
T cd07862         198 IFAEMFRRKPLFRGSSDV-----DQLGKILDV-IGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCL  271 (290)
T ss_pred             HHHHHHcCCCCcCCCCHH-----HHHHHHHHH-hCCCChhhchhhhcccchhccCCCCCCHHHHccCCCHHHHHHHHHHh
Confidence            999999999999652111     011111100 000000000      0000000000000   0123356789999999


Q ss_pred             cCCCCCCCCCCC
Q 044022          230 NNSPEDRPTMVD  241 (241)
Q Consensus       230 ~~~p~~Rpt~~e  241 (241)
                      +.||++|||+.|
T Consensus       272 ~~~P~~R~s~~~  283 (290)
T cd07862         272 TFNPAKRISAYS  283 (290)
T ss_pred             ccCchhcCCHHH
Confidence            999999999864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=100.00  E-value=6.3e-36  Score=244.63  Aligned_cols=199  Identities=20%  Similarity=0.241  Sum_probs=156.4

Q ss_pred             cHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ....+..|..++..+ +|++|+++++++...+..++||||+++|+|.+++....    .....++.|++.||.|||   +
T Consensus        43 ~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~g~L~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH---~  119 (323)
T cd05616          43 DVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYQIQQVGRFKEPHAVFYAAEIAIGLFFLH---S  119 (323)
T ss_pred             HHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEEEEEcCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            345577788888887 57899999999999999999999999999999886542    246789999999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhc
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      .+++||||||+|||++.++.++|+|||++........  ......|++.|+|||++.+..++.++||||||+++|+|++|
T Consensus       120 ~~ivHrDlkp~Nill~~~~~~kL~DfG~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg  197 (323)
T cd05616         120 KGIIYRDLKLDNVMLDSEGHIKIADFGMCKENMWDGV--TTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAG  197 (323)
T ss_pred             CCEEecCCCHHHeEECCCCcEEEccCCCceecCCCCC--ccccCCCChhhcCHHHhcCCCCCCccchhchhHHHHHHHhC
Confidence            9999999999999999999999999999875432211  12335689999999999988999999999999999999999


Q ss_pred             CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCC
Q 044022          167 RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM  239 (241)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~  239 (241)
                      +.||....         ..+....... ...      ....        ..+..+.+++.+||+.||++|+++
T Consensus       198 ~~Pf~~~~---------~~~~~~~i~~-~~~------~~p~--------~~s~~~~~li~~~l~~~p~~R~~~  246 (323)
T cd05616         198 QAPFEGED---------EDELFQSIME-HNV------AYPK--------SMSKEAVAICKGLMTKHPGKRLGC  246 (323)
T ss_pred             CCCCCCCC---------HHHHHHHHHh-CCC------CCCC--------cCCHHHHHHHHHHcccCHHhcCCC
Confidence            99995421         1111111111 110      0111        122567899999999999999986

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=100.00  E-value=8.1e-37  Score=254.79  Aligned_cols=158  Identities=16%  Similarity=0.224  Sum_probs=134.6

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ....+.+|++++++++|+||+++++.+...+..++||||+++|+|.+++.....    ....++.||+.||+|||   ++
T Consensus        44 ~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~g~L~~~i~~~~~~~~~~~~~~~~qi~~al~~lH---~~  120 (376)
T cd05598          44 QAAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMDYIPGGDMMSLLIRLGIFEEDLARFYIAELTCAIESVH---KM  120 (376)
T ss_pred             hHHHHHHHHHHHHhCCCCCcceEEEEEEcCCEEEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HC
Confidence            456788999999999999999999999999999999999999999999866532    34567889999999999   99


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCC-----------------------------------------ccee
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGE-----------------------------------------THIT  126 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~-----------------------------------------~~~~  126 (241)
                      +|+||||||+|||++.++.++|+|||++.......                                         ....
T Consensus       121 ~ivHrDlkp~Nill~~~~~ikL~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (376)
T cd05598         121 GFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQKGDHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQRCL  200 (376)
T ss_pred             CeEeCCCCHHHEEECCCCCEEEEeCCCCccccccccccccccccccccccccccccccccccccccchhhhhhhhccccc
Confidence            99999999999999999999999999874221000                                         0000


Q ss_pred             ecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcCccccc
Q 044022          127 TDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       127 ~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~~p~~~  172 (241)
                      .....||+.|+|||++.+..++.++|||||||++|+|++|+.||..
T Consensus       201 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~  246 (376)
T cd05598         201 AHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLA  246 (376)
T ss_pred             ccccCCCccccCHHHHcCCCCCcceeeeeccceeeehhhCCCCCCC
Confidence            1134689999999999988899999999999999999999999965

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=1.2e-35  Score=235.25  Aligned_cols=194  Identities=25%  Similarity=0.392  Sum_probs=153.2

Q ss_pred             HHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC--c---hHHHHHHHHHHHhchhhcCCCC
Q 044022           13 YGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP--L---PRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~--~---~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ...|.+|+.++++++||||+++++++.. +..++|+||+++++|.+++....  .   .++.++.+++.||.|||   ++
T Consensus        45 ~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH---~~  120 (259)
T cd05037          45 SLAFFETASLMSQLSHKHLVKLYGVCVR-DENIMVEEYVKFGPLDVFLHREKNNVSLHWKLDVAKQLASALHYLE---DK  120 (259)
T ss_pred             HHHHHHHHHHHHcCCCcchhheeeEEec-CCcEEEEEcCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh---hC
Confidence            6788999999999999999999999988 77899999999999999987543  1   46788999999999999   99


Q ss_pred             CceeccCCCCCeeecCCC-------CeEEeeccCceecCCCCcceeecccccCCCccCccccccc--CCCcchhhHHHHH
Q 044022           88 PIVLRNFKTQNILFNEEN-------VAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC--VLNEKSNVFSFGA  158 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~-------~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~--~~~~~~Di~s~G~  158 (241)
                      +++|+||||+||+++.++       .++++|||.+......      ....++..|+|||++...  .++.++|+||||+
T Consensus       121 ~i~H~dlkp~Nill~~~~~~~~~~~~~kl~Dfg~a~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~  194 (259)
T cd05037         121 KLVHGNVCGKNILVARYGLNEGYVPFIKLSDPGIPITVLSR------EERVERIPWIAPECIRNGQASLTIAADKWSFGT  194 (259)
T ss_pred             CeecccCccceEEEecCccccCCceeEEeCCCCcccccccc------cccccCCCccChhhhcCCCCCcchhhHHHHHHH
Confidence            999999999999999887       7999999998765431      223466789999999876  7889999999999


Q ss_pred             HHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCC
Q 044022          159 FLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRP  237 (241)
Q Consensus       159 ~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rp  237 (241)
                      ++|++++ |..||......         +..... ....  ....+             ....+.+++.+||..+|++||
T Consensus       195 ~~~~l~~~~~~p~~~~~~~---------~~~~~~-~~~~--~~~~~-------------~~~~~~~li~~~l~~~p~~Rp  249 (259)
T cd05037         195 TLLEICSNGEEPLSTLSSS---------EKERFY-QDQH--RLPMP-------------DCAELANLINQCWTYDPTKRP  249 (259)
T ss_pred             HHHHHHhCCCCCcccCCch---------hHHHHH-hcCC--CCCCC-------------CchHHHHHHHHHhccChhhCC
Confidence            9999999 57777552110         111111 1110  00000             015788999999999999999


Q ss_pred             CCCC
Q 044022          238 TMVD  241 (241)
Q Consensus       238 t~~e  241 (241)
                      |+.|
T Consensus       250 t~~~  253 (259)
T cd05037         250 SFRA  253 (259)
T ss_pred             CHHH
Confidence            9864

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=100.00  E-value=7.1e-36  Score=243.27  Aligned_cols=233  Identities=19%  Similarity=0.269  Sum_probs=164.6

Q ss_pred             Ccccccc-cccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC------chHHHHHHH
Q 044022            1 MKFYGHE-YHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP------LPRLKIASD   73 (241)
Q Consensus         1 iK~~~~~-~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~------~~~~~~~~~   73 (241)
                      ||.+..+ ......+.+.+|++++++++|+||+++++++...+..+++|||+++++|.+++....      .....++.+
T Consensus        30 vK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  109 (314)
T cd08216          30 VKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDSELYVVSPLMAYGSCEDLLKTHFPEGLPELAIAFILKD  109 (314)
T ss_pred             EEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhhheeecCCeEEEEEeccCCCCHHHHHHHhcccCCCHHHHHHHHHH
Confidence            3454433 334566789999999999999999999999999999999999999999999986531      135678999


Q ss_pred             HHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCc-----ceeecccccCCCccCccccccc--C
Q 044022           74 IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGET-----HITTDRVIGTRGYSAPEYISIC--V  146 (241)
Q Consensus        74 i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~-----~~~~~~~~~~~~~~aPE~~~~~--~  146 (241)
                      ++.||.|||   +.+++|+||||+||+++.++.++++||+.+........     ........++..|+|||++...  .
T Consensus       110 l~~~L~~LH---~~~ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  186 (314)
T cd08216         110 VLNALDYIH---SKGFIHRSVKASHILLSGDGKVVLSGLRYSVSMIKHGKRQRVVHDFPKSSVKNLPWLSPEVLQQNLQG  186 (314)
T ss_pred             HHHHHHHHH---HCCeecCCCCcceEEEecCCceEEecCccceeeccccccccccccccccccccccccCHHHhcCCCCC
Confidence            999999999   99999999999999999999999999998865432211     0111223466789999998753  5


Q ss_pred             CCcchhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHH----hhhccc-------C----CCCCCccccCCCc
Q 044022          147 LNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNY----LEDKRF-------T----GIPAPIIVQDIPC  211 (241)
Q Consensus       147 ~~~~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-------~----~~~~~~~~~~~~~  211 (241)
                      ++.++|+||||+++|+|++|+.||.......     ...+.....    ......       .    ...........+.
T Consensus       187 ~~~~~Diws~G~il~el~~g~~pf~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (314)
T cd08216         187 YNEKSDIYSVGITACELANGHVPFKDMPATQ-----MLLEKVRGTVPCLLDKSTYPLYEDSMSQSRSSNEHPNNRDSVDH  261 (314)
T ss_pred             CCcchhHHHHHHHHHHHHhCCCCCCCCCHHH-----HHHHHHhccCccccccCchhhhcCCcCcccccccccchhhhhhc
Confidence            7889999999999999999999996522110     000000000    000000       0    0000011111111


Q ss_pred             hhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          212 IEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       212 ~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ......+..+.+++.+||..||++|||++|
T Consensus       262 ~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~  291 (314)
T cd08216         262 PYTRTFSEHFHQFVELCLQRDPESRPSASQ  291 (314)
T ss_pred             chhhHHHHHHHHHHHHHhhcCCCcCcCHHH
Confidence            112244567889999999999999999864

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=100.00  E-value=3.6e-36  Score=250.26  Aligned_cols=157  Identities=17%  Similarity=0.250  Sum_probs=135.2

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc---hHHHHHHHHHHHhchhhcCCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL---PRLKIASDIVNSLAYLHFGFPRP   88 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~i~~~l~~lh~~~~~~   88 (241)
                      ....+.+|+.+++.++||||+++++++...+..++||||+++|+|.+++.....   ....++.||+.||.|||   +++
T Consensus        86 ~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~~lv~Ey~~gg~L~~~~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~  162 (371)
T cd05622          86 DSAFFWEERDIMAFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIH---SMG  162 (371)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH---HCC
Confidence            345578899999999999999999999999999999999999999999876543   35678899999999999   999


Q ss_pred             ceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc----CCCcchhhHHHHHHHHHHH
Q 044022           89 IVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC----VLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        89 ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~----~~~~~~Di~s~G~~~~~~~  164 (241)
                      ++||||||+|||++.++.+||+|||++......... ......||+.|+|||++...    .++.++||||||+++|+|+
T Consensus       163 ivHrDLkp~NIll~~~~~ikL~DfG~a~~~~~~~~~-~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~DiwSlGvilyell  241 (371)
T cd05622         163 FIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMV-RCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEML  241 (371)
T ss_pred             EEeCCCCHHHEEECCCCCEEEEeCCceeEcCcCCcc-cccCcccCccccCHHHHhccCCCccCCCccceeehhHHHHHHH
Confidence            999999999999999999999999998765433211 12345689999999998754    3778999999999999999


Q ss_pred             hcCccccc
Q 044022          165 AGRIHIWD  172 (241)
Q Consensus       165 ~g~~p~~~  172 (241)
                      +|..||..
T Consensus       242 ~G~~Pf~~  249 (371)
T cd05622         242 VGDTPFYA  249 (371)
T ss_pred             hCCCCCCC
Confidence            99999964

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=100.00  E-value=1.3e-35  Score=240.67  Aligned_cols=204  Identities=23%  Similarity=0.321  Sum_probs=156.5

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc-----hHHHHHHHHHHHhchhhcCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL-----PRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-----~~~~~~~~i~~~l~~lh~~~   85 (241)
                      .....+.+|+.++++++||||+++++++... ..++++||+++|+|.+++.....     ..+.++.+++.||.|||   
T Consensus        51 ~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~-~~~~v~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH---  126 (303)
T cd05110          51 KANVEFMDEALIMASMDHPHLVRLLGVCLSP-TIQLVTQLMPHGCLLDYVHEHKDNIGSQLLLNWCVQIAKGMMYLE---  126 (303)
T ss_pred             HHHHHHHHHHHHHHhCCCCCcccEEEEEcCC-CceeeehhcCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHh---
Confidence            3345788999999999999999999998654 46799999999999999876421     46788999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~  165 (241)
                      +++++|+||||+||+++.++.+||+|||.+................++..|+|||++.+..++.++||||||+++|++++
T Consensus       127 ~~~ivH~dikp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DiwslG~~l~el~t  206 (303)
T cd05110         127 ERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMT  206 (303)
T ss_pred             hcCeeccccccceeeecCCCceEEccccccccccCcccccccCCCccccccCCHHHhccCCCChHHHHHHHHHHHHHHHh
Confidence            89999999999999999999999999999976544322222223345678999999988889999999999999999997


Q ss_pred             -cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          166 -GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       166 -g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                       |..||....         ..+ .......+...  ..+   .        .++..+.+++..||..+|++|||++|
T Consensus       207 ~g~~p~~~~~---------~~~-~~~~~~~~~~~--~~~---~--------~~~~~~~~li~~c~~~~p~~Rp~~~~  260 (303)
T cd05110         207 FGGKPYDGIP---------TRE-IPDLLEKGERL--PQP---P--------ICTIDVYMVMVKCWMIDADSRPKFKE  260 (303)
T ss_pred             CCCCCCCCCC---------HHH-HHHHHHCCCCC--CCC---C--------CCCHHHHHHHHHHcCCChhhCcCHHH
Confidence             888885411         111 11111111111  110   1        12256889999999999999999864

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=9e-36  Score=237.15  Aligned_cols=203  Identities=20%  Similarity=0.292  Sum_probs=159.1

Q ss_pred             HHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCCCC
Q 044022           13 YGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFPRP   88 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~~~   88 (241)
                      .+.+.+|+.++++++||||+++++++...+..++++||+++++|.+++.....    ....++.+++.|+.|||   +.+
T Consensus        50 ~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~~l~~~l~~lH---~~~  126 (267)
T cd06628          50 LDALAREIALLKELQHENIVQYLGSSLDADHLNIFLEYVPGGSVAALLNNYGAFEETLVRNFVRQILKGLNYLH---NRG  126 (267)
T ss_pred             HHHHHHHHHHHHhcCCCCeeeEEEEEEeCCccEEEEEecCCCCHHHHHHhccCccHHHHHHHHHHHHHHHHHHH---hcC
Confidence            35688999999999999999999999999999999999999999999865422    45688999999999999   899


Q ss_pred             ceeccCCCCCeeecCCCCeEEeeccCceecCCCCcce----eecccccCCCccCcccccccCCCcchhhHHHHHHHHHHH
Q 044022           89 IVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHI----TTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        89 ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~----~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~  164 (241)
                      ++|+||+|+||+++.++.++|+|||.+..........    ......++..|+|||.+.+..++.++|+||||+++|+++
T Consensus       127 ivH~di~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~  206 (267)
T cd06628         127 IIHRDIKGANILVDNKGGIKISDFGISKKLEANSLSTKTNGARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEML  206 (267)
T ss_pred             cccccCCHHHEEEcCCCCEEecccCCCcccccccccCCccccccccCCCcCccChhHhccCCCCchhhhHHHHHHHHHHh
Confidence            9999999999999999999999999987664321110    111234778899999998888899999999999999999


Q ss_pred             hcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          165 AGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       165 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +|+.||.....         ......... .     ..+....        ..+..+.+++.+||+.||.+|||+.|
T Consensus       207 ~g~~p~~~~~~---------~~~~~~~~~-~-----~~~~~~~--------~~~~~~~~li~~~l~~~p~~Rp~~~~  260 (267)
T cd06628         207 TGKHPFPDCTQ---------LQAIFKIGE-N-----ASPEIPS--------NISSEAIDFLEKTFEIDHNKRPTAAE  260 (267)
T ss_pred             hCCCCCCCccH---------HHHHHHHhc-c-----CCCcCCc--------ccCHHHHHHHHHHccCCchhCcCHHH
Confidence            99999965211         011111111 1     1111111        22367889999999999999999854

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=8.1e-36  Score=239.68  Aligned_cols=213  Identities=22%  Similarity=0.253  Sum_probs=161.5

Q ss_pred             cccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCC
Q 044022           10 RHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        10 ~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ......+.+|+++++.++||||+++++++...+.+++|+||+++++|.+++.....    ....++.+++.|+.|||.  
T Consensus        44 ~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~--  121 (284)
T cd06620          44 SSVRKQILRELQIMHECRSPYIVSFYGAFLNENNICMCMEFMDCGSLDRIYKKGGPIPVEILGKIAVAVVEGLTYLYN--  121 (284)
T ss_pred             chHHHHHHHHHHHHHHcCCCCcceEeeeEecCCEEEEEEecCCCCCHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH--
Confidence            34467889999999999999999999999999999999999999999998865432    456889999999999993  


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~  165 (241)
                      ..+++|+||+|+||+++.++.++|+|||++........    ....++..|+|||++.+..++.++|+||||+++|++++
T Consensus       122 ~~~i~H~dl~p~nil~~~~~~~~l~d~gl~~~~~~~~~----~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~t  197 (284)
T cd06620         122 VHRIMHRDIKPSNILVNSRGQIKLCDFGVSGELINSIA----DTFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELAL  197 (284)
T ss_pred             hcCeeccCCCHHHEEECCCCcEEEccCCcccchhhhcc----CccccCcccCCHHHHccCCCCccchHHHHHHHHHHHHh
Confidence            25899999999999999999999999998765432211    23467889999999988889999999999999999999


Q ss_pred             cCcccccccccCCC--cccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          166 GRIHIWDLLKDTHD--HGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       166 g~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      |..||.........  ......+.........      .+.+..       ...+..+.+++.+||..||++|||++|
T Consensus       198 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-------~~~~~~~~~li~~~l~~dp~~Rpt~~e  262 (284)
T cd06620         198 GKFPFAFSNIDDDGQDDPMGILDLLQQIVQEP------PPRLPS-------SDFPEDLRDFVDACLLKDPTERPTPQQ  262 (284)
T ss_pred             CCCCCcccchhhhhhhhhhHHHHHHHHHhhcc------CCCCCc-------hhcCHHHHHHHHHHhcCCcccCcCHHH
Confidence            99999753221100  0000111111111110      001000       123357889999999999999999864

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=100.00  E-value=2.2e-36  Score=252.74  Aligned_cols=158  Identities=16%  Similarity=0.224  Sum_probs=134.3

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ....+.+|++++++++|+||+++++.+...+..++||||+++|+|.+++.....    ....++.||+.||.|||   +.
T Consensus        44 ~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~al~~lH---~~  120 (382)
T cd05625          44 QVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMDYIPGGDMMSLLIRMGIFPEDLARFYIAELTCAVESVH---KM  120 (382)
T ss_pred             HHHHHHHHHHHHHhCCCCcCCeEEEEEEeCCEEEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hC
Confidence            456788999999999999999999999999999999999999999998865422    35668889999999999   89


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCC---------------------------------------------
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGE---------------------------------------------  122 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~---------------------------------------------  122 (241)
                      +|+||||||+|||++.++.++|+|||++.......                                             
T Consensus       121 ~ivHrDlKp~NILl~~~g~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (382)
T cd05625         121 GFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQSGDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAARQH  200 (382)
T ss_pred             CeecCCCCHHHEEECCCCCEEEeECCCCccccccccccccccccccccccccccccccccccccccccccchhhhhcccc
Confidence            99999999999999999999999999874321000                                             


Q ss_pred             cceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcCccccc
Q 044022          123 THITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~~p~~~  172 (241)
                      .........||+.|+|||++.+..++.++|||||||++|+|++|+.||..
T Consensus       201 ~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~  250 (382)
T cd05625         201 QRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLA  250 (382)
T ss_pred             ccccccccccCcccCCHHHhcCCCCCCeeeEEechHHHHHHHhCCCCCCC
Confidence            00001234689999999999988999999999999999999999999965

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.4e-35  Score=233.87  Aligned_cols=206  Identities=23%  Similarity=0.345  Sum_probs=160.5

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC--Cc---hHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA--PL---PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~--~~---~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ..+.+.+|++++++++||||+++++++...+..+++|||+++++|.+++...  ..   ....++.+++.|+.|||   +
T Consensus        43 ~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~l~~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh---~  119 (262)
T cd06613          43 DFEIIQQEISMLKECRHPNIVAYFGSYLRRDKLWIVMEYCGGGSLQDIYQVTRGPLSELQIAYVCRETLKGLAYLH---E  119 (262)
T ss_pred             hHHHHHHHHHHHHhCCCCChhceEEEEEeCCEEEEEEeCCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH---h
Confidence            5678899999999999999999999999999999999999999999987654  22   46778999999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc---CCCcchhhHHHHHHHHHH
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC---VLNEKSNVFSFGAFLFEL  163 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~---~~~~~~Di~s~G~~~~~~  163 (241)
                      .+++|+||+|+||+++.++.++|+|||.+........  ......++..|+|||.+...   .++.++|+||||+++|+|
T Consensus       120 ~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~--~~~~~~~~~~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~  197 (262)
T cd06613         120 TGKIHRDIKGANILLTEDGDVKLADFGVSAQLTATIA--KRKSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIEL  197 (262)
T ss_pred             CCceecCCChhhEEECCCCCEEECccccchhhhhhhh--ccccccCCccccCchhhcccccCCcCchhhhHHHHHHHHHH
Confidence            9999999999999999999999999999875543211  11234577889999998776   788999999999999999


Q ss_pred             HhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          164 LAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       164 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ++|+.||.....         .+.........    ......      ......+..+.+++.+||..+|..|||+.|
T Consensus       198 ~tg~~p~~~~~~---------~~~~~~~~~~~----~~~~~~------~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~  256 (262)
T cd06613         198 AELQPPMFDLHP---------MRALFLISKSN----FPPPKL------KDKEKWSPVFHDFIKKCLTKDPKKRPTATK  256 (262)
T ss_pred             HhCCCCCCCCCH---------HHHHHHHHhcc----CCCccc------cchhhhhHHHHHHHHHHcCCChhhCCCHHH
Confidence            999999965211         11111111110    011110      011234567899999999999999999864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.2e-35  Score=235.10  Aligned_cols=199  Identities=22%  Similarity=0.329  Sum_probs=158.3

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC------chHHHHHHHHHHHhchhhcCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP------LPRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~------~~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ..+++.+|+.+++.++|+||+++++++......++|+||+++++|.+++....      .....++.+++.|+.|||   
T Consensus        43 ~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh---  119 (256)
T cd05039          43 AAQAFLAEASVMTTLRHPNLVQLLGVVLQGNPLYIVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLE---  119 (256)
T ss_pred             HHHHHHHHHHHHHhcCCcceeeeEEEEcCCCCeEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            46789999999999999999999999998889999999999999999986543      146789999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~  165 (241)
                      +.+++|+||+|+||+++.++.++|+|||.+........     ....+..|+|||++....++.++|+||||+++|++++
T Consensus       120 ~~~i~H~di~p~Nili~~~~~~~l~d~g~~~~~~~~~~-----~~~~~~~~~ape~~~~~~~~~~~Di~slG~il~~l~~  194 (256)
T cd05039         120 EKNFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQD-----SGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYS  194 (256)
T ss_pred             hCCccchhcccceEEEeCCCCEEEcccccccccccccc-----cCCCcccccCchhhcCCcCCcHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999876533221     2234567999999988889999999999999999997


Q ss_pred             -cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          166 -GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       166 -g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                       |..||....         ..+....... ......     ..        ..++.+.+++.+||..+|++|||++|
T Consensus       195 ~g~~p~~~~~---------~~~~~~~~~~-~~~~~~-----~~--------~~~~~~~~li~~~l~~~p~~Rp~~~~  248 (256)
T cd05039         195 FGRVPYPRIP---------LKDVVPHVEK-GYRMEA-----PE--------GCPPEVYKVMKDCWELDPAKRPTFKQ  248 (256)
T ss_pred             cCCCCCCCCC---------HHHHHHHHhc-CCCCCC-----cc--------CCCHHHHHHHHHHhccChhhCcCHHH
Confidence             999985421         1111111111 101000     11        12367889999999999999999864

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=100.00  E-value=8e-36  Score=247.37  Aligned_cols=155  Identities=19%  Similarity=0.233  Sum_probs=130.0

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCC------cceEEEEecCCCCHHHhhcCC--CchHHHHHHHHHHHhchhh
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTP------IPILVFQSVEYGTLRDCIFGA--PLPRLKIASDIVNSLAYLH   82 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~------~~~lv~e~~~~~sL~~~l~~~--~~~~~~~~~~i~~~l~~lh   82 (241)
                      .....+.+|+.+++.++||||+++++++...+      ..++||||+. ++|.+.+...  ......++.|++.||.|||
T Consensus        62 ~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~qi~~~L~~LH  140 (359)
T cd07876          62 THAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEEFQDVYLVMELMD-ANLCQVIHMELDHERMSYLLYQMLCGIKHLH  140 (359)
T ss_pred             hHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCccccceeEEEEeCCC-cCHHHHHhccCCHHHHHHHHHHHHHHHHHHH
Confidence            44667889999999999999999999987543      4699999997 5677665433  2245678999999999999


Q ss_pred             cCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHH
Q 044022           83 FGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFE  162 (241)
Q Consensus        83 ~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~  162 (241)
                         +.+++||||||+||+++.++.++|+|||++........   .....++..|+|||.+.+..++.++||||||+++|+
T Consensus       141 ---~~~ivHrDlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~e  214 (359)
T cd07876         141 ---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTACTNFM---MTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGE  214 (359)
T ss_pred             ---hCCcccCCCCHHHEEECCCCCEEEecCCCccccccCcc---CCCCcccCCCCCchhccCCCCCcchhhHHHHHHHHH
Confidence               99999999999999999999999999999865432211   123467889999999998899999999999999999


Q ss_pred             HHhcCccccc
Q 044022          163 LLAGRIHIWD  172 (241)
Q Consensus       163 ~~~g~~p~~~  172 (241)
                      |++|+.||..
T Consensus       215 l~tg~~pf~~  224 (359)
T cd07876         215 LVKGSVIFQG  224 (359)
T ss_pred             HHhCCCCCCC
Confidence            9999999964

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=1.1e-35  Score=239.02  Aligned_cols=205  Identities=20%  Similarity=0.277  Sum_probs=156.8

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC----Cc---hHHHHHHHHHHHhchhhc
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA----PL---PRLKIASDIVNSLAYLHF   83 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~----~~---~~~~~~~~i~~~l~~lh~   83 (241)
                      .....+.+|++++++++|+||+++++.+...+..++|+||+++++|..++...    ..   ....++.+++.|+.|||.
T Consensus        41 ~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~  120 (286)
T cd06622          41 SKFNQIIMELDILHKAVSPYIVDFYGAFFIEGAVYMCMEYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKE  120 (286)
T ss_pred             HHHHHHHHHHHHHHhcCCCcHHhhhhheecCCeEEEEEeecCCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            34568899999999999999999999999999999999999999999988663    11   457889999999999993


Q ss_pred             CCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccC------CCcchhhHHHH
Q 044022           84 GFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICV------LNEKSNVFSFG  157 (241)
Q Consensus        84 ~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~------~~~~~Di~s~G  157 (241)
                        +.+++|+||+|+||+++.++.++|+|||.+........    ....++..|+|||.+.+..      ++.++|+||||
T Consensus       121 --~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG  194 (286)
T cd06622         121 --EHNIIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVASLA----KTNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLG  194 (286)
T ss_pred             --cCCEeeCCCCHHHEEECCCCCEEEeecCCcccccCCcc----ccCCCccCccCcchhcCCCCCccCCCCcccchHhHH
Confidence              35899999999999999999999999999875533221    2235778899999986543      47899999999


Q ss_pred             HHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCC
Q 044022          158 AFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRP  237 (241)
Q Consensus       158 ~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rp  237 (241)
                      +++|++++|+.||.....         ...........   ....+.+..        ..+..+.+++.+||..+|++||
T Consensus       195 ~il~~l~~g~~pf~~~~~---------~~~~~~~~~~~---~~~~~~~~~--------~~~~~~~~li~~~l~~~p~~Rp  254 (286)
T cd06622         195 LSILEMALGRYPYPPETY---------ANIFAQLSAIV---DGDPPTLPS--------GYSDDAQDFVAKCLNKIPNRRP  254 (286)
T ss_pred             HHHHHHHhCCCCCCCcch---------hhHHHHHHHHh---hcCCCCCCc--------ccCHHHHHHHHHHcccCcccCC
Confidence            999999999999954210         11111111000   000111111        2346788999999999999999


Q ss_pred             CCCC
Q 044022          238 TMVD  241 (241)
Q Consensus       238 t~~e  241 (241)
                      |++|
T Consensus       255 ~~~~  258 (286)
T cd06622         255 TYAQ  258 (286)
T ss_pred             CHHH
Confidence            9853

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=1.6e-35  Score=234.75  Aligned_cols=197  Identities=23%  Similarity=0.378  Sum_probs=152.2

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHHHhchhhcCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ...+.+.+|+.++++++|||++++++++...+..++||||+.+|+|.+++....     ...+.++.|++.||+|||   
T Consensus        41 ~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---  117 (258)
T cd05078          41 NYSESFFEAASMMSQLSHKHLVLNYGVCVCGDESIMVQEYVKFGSLDTYLKKNKNLINISWKLEVAKQLAWALHFLE---  117 (258)
T ss_pred             HHHHHHHHHHHHHHhCCCCChhheeeEEEeCCCcEEEEecCCCCcHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            345678899999999999999999999999899999999999999999986542     146778999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCC--------eEEeeccCceecCCCCcceeecccccCCCccCccccccc-CCCcchhhHHH
Q 044022           86 PRPIVLRNFKTQNILFNEENV--------AKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-VLNEKSNVFSF  156 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~--------~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~  156 (241)
                      +.+++||||||+||+++.++.        ++++|||.+......      ....++..|+|||++.+. .++.++|||||
T Consensus       118 ~~~iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~g~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~Diwsl  191 (258)
T cd05078         118 DKGLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISITVLPK------EILLERIPWVPPECIENPQNLSLAADKWSF  191 (258)
T ss_pred             HCCeecCCCccceEEEecccccccCCCceEEecccccccccCCc------hhccccCCccCchhccCCCCCCchhhHHHH
Confidence            999999999999999987765        589999987654322      223567889999999864 57889999999


Q ss_pred             HHHHHHHHhcC-cccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCC
Q 044022          157 GAFLFELLAGR-IHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPED  235 (241)
Q Consensus       157 G~~~~~~~~g~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~  235 (241)
                      |+++|++++|. .|+.....         ..... .....  ...+.             .....+.+++.+||+.||++
T Consensus       192 G~~l~~l~~g~~~~~~~~~~---------~~~~~-~~~~~--~~~~~-------------~~~~~~~~li~~~l~~~p~~  246 (258)
T cd05078         192 GTTLWEIFSGGDKPLSALDS---------QKKLQ-FYEDR--HQLPA-------------PKWTELANLINQCMDYEPDF  246 (258)
T ss_pred             HHHHHHHHcCCCCChhhccH---------HHHHH-HHHcc--ccCCC-------------CCcHHHHHHHHHHhccChhh
Confidence            99999999985 55533111         01111 11110  01111             11246889999999999999


Q ss_pred             CCCCCC
Q 044022          236 RPTMVD  241 (241)
Q Consensus       236 Rpt~~e  241 (241)
                      |||++|
T Consensus       247 Rps~~~  252 (258)
T cd05078         247 RPSFRA  252 (258)
T ss_pred             CCCHHH
Confidence            999864

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=100.00  E-value=5.4e-36  Score=236.87  Aligned_cols=203  Identities=25%  Similarity=0.336  Sum_probs=159.9

Q ss_pred             HHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHHHhchhhcCCCC
Q 044022           13 YGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      .+++.+|++++++++|+||+++++++......++++||+.+++|.+++....     .....++.+++.|+.|||   +.
T Consensus        42 ~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~~l~~lh---~~  118 (256)
T cd06612          42 LQEIIKEISILKQCDSPYIVKYYGSYFKNTDLWIVMEYCGAGSVSDIMKITNKTLTEEEIAAILYQTLKGLEYLH---SN  118 (256)
T ss_pred             HHHHHHHHHHHHhCCCCcEeeeeeeeecCCcEEEEEecCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHH---HC
Confidence            6789999999999999999999999999999999999999999999986432     146788999999999999   89


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcC
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR  167 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~  167 (241)
                      +++|+||+|+||+++.++.++|+|||.+........  ......++..|+|||++.+..++.++||||||+++|+|++|+
T Consensus       119 ~i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~~PE~~~~~~~~~~~Di~s~G~il~~l~~g~  196 (256)
T cd06612         119 KKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMA--KRNTVIGTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEGK  196 (256)
T ss_pred             CcccCCCCcceEEECCCCcEEEcccccchhcccCcc--ccccccCCccccCHHHHhcCCCCchhhHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999876544321  112345788899999998888999999999999999999999


Q ss_pred             cccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          168 IHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       168 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      .||......         +...... .     .....+.      .....+..+.+++.+||+.||++|||+.|
T Consensus       197 ~p~~~~~~~---------~~~~~~~-~-----~~~~~~~------~~~~~~~~~~~~i~~~l~~~P~~Rps~~~  249 (256)
T cd06612         197 PPYSDIHPM---------RAIFMIP-N-----KPPPTLS------DPEKWSPEFNDFVKKCLVKDPEERPSAIQ  249 (256)
T ss_pred             CCCCCcchh---------hhhhhhc-c-----CCCCCCC------chhhcCHHHHHHHHHHHhcChhhCcCHHH
Confidence            998542111         0000000 0     0000000      01123357899999999999999999864

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=100.00  E-value=6.3e-36  Score=240.51  Aligned_cols=201  Identities=20%  Similarity=0.285  Sum_probs=157.5

Q ss_pred             HHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC------chHHHHHHHHHHHhchhhcCCC
Q 044022           13 YGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP------LPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~------~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ...+.+|+.++++++|+|++++++.+...+..++||||+++++|.+++....      .....++.|++.||.|||   +
T Consensus        44 ~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH---~  120 (285)
T cd05630          44 ESMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLH---Q  120 (285)
T ss_pred             HHHHHHHHHHHHhCCCCCeeeeeEEEecCCEEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---h
Confidence            4557889999999999999999999999999999999999999998874321      146778999999999999   9


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhc
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      .+++|+||||+||+++.++.++|+|||++.........   ....|+..|+|||++.+..++.++|+||||+++|+|++|
T Consensus       121 ~~iiH~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~---~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g  197 (285)
T cd05630         121 ERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTI---KGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAG  197 (285)
T ss_pred             CCEEeCCCCHHHEEECCCCCEEEeeccceeecCCCccc---cCCCCCccccChHHHcCCCCCCccccHHHHHHHHHHHhC
Confidence            99999999999999999999999999998765433221   223688999999999988899999999999999999999


Q ss_pred             CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCC
Q 044022          167 RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM  239 (241)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~  239 (241)
                      +.||......      ...+..........      .....        ..+..+.+++.+||+.||++|||+
T Consensus       198 ~~Pf~~~~~~------~~~~~~~~~~~~~~------~~~~~--------~~~~~~~~li~~~l~~~p~~R~s~  250 (285)
T cd05630         198 QSPFQQRKKK------IKREEVERLVKEVQ------EEYSE--------KFSPDARSLCKMLLCKDPKERLGC  250 (285)
T ss_pred             CCCCCCCCcc------chHHHHHhhhhhhh------hhcCc--------cCCHHHHHHHHHHhhcCHHHccCC
Confidence            9999652111      01111111111100      00111        123568899999999999999994

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=100.00  E-value=2.7e-36  Score=240.12  Aligned_cols=204  Identities=23%  Similarity=0.323  Sum_probs=159.3

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC-----C---chHHHHHHHHHHHhchhhc
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA-----P---LPRLKIASDIVNSLAYLHF   83 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~-----~---~~~~~~~~~i~~~l~~lh~   83 (241)
                      ...++.+|+++++.++|+||+++++++...+..++++||+++++|.+++...     .   .....++.+++.|+.||| 
T Consensus        45 ~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH-  123 (267)
T cd08229          45 ARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMH-  123 (267)
T ss_pred             HHHHHHHHHHHHHHccCCchhhhhheeEeCCeEEEEEEecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHH-
Confidence            4567889999999999999999999999999999999999999999987531     1   145688999999999999 


Q ss_pred             CCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHH
Q 044022           84 GFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL  163 (241)
Q Consensus        84 ~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~  163 (241)
                        +.+++|+||+|+||+++.++.++++|||.+.........  .....++..|+|||.+.+..++.++|+||||+++|+|
T Consensus       124 --~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l  199 (267)
T cd08229         124 --SRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTA--AHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEM  199 (267)
T ss_pred             --HCCeecCCCCHHHEEEcCCCCEEECcchhhhccccCCcc--cccccCCcCccCHHHhcCCCccchhhHHHHHHHHHHH
Confidence              999999999999999999999999999988755433211  1234578889999999888889999999999999999


Q ss_pred             HhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          164 LAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       164 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                      ++|..||......       ..+...... ...     .+...       ....+..+.+++.+||..||++|||+.
T Consensus       200 ~~g~~p~~~~~~~-------~~~~~~~~~-~~~-----~~~~~-------~~~~~~~~~~li~~~l~~~p~~Rpt~~  256 (267)
T cd08229         200 AALQSPFYGDKMN-------LYSLCKKIE-QCD-----YPPLP-------SDHYSEELRQLVNMCINPDPEKRPDIT  256 (267)
T ss_pred             HhCCCCcccccch-------HHHHhhhhh-cCC-----CCCCC-------cccccHHHHHHHHHhcCCCcccCCCHH
Confidence            9999998542110       111111111 000     00000       113446789999999999999999985

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=4.6e-37  Score=229.76  Aligned_cols=209  Identities=19%  Similarity=0.280  Sum_probs=158.8

Q ss_pred             cccHHHHHHHHHHHHhcCCCcccceeeeeeeCC-----cceEEEEecCCCCHHHhhcCC--------CchHHHHHHHHHH
Q 044022           10 RHTYGSCINNITYAAQMSHNHILKRIGCCLQTP-----IPILVFQSVEYGTLRDCIFGA--------PLPRLKIASDIVN   76 (241)
Q Consensus        10 ~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~-----~~~lv~e~~~~~sL~~~l~~~--------~~~~~~~~~~i~~   76 (241)
                      .+..+..++|++..++++|||+++++++...+.     ..|+++.|...|||.+.+...        +.+.+.|+.++++
T Consensus        59 ~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~~~~~yll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~  138 (302)
T KOG2345|consen   59 QEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKDGKHEAYLLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICR  138 (302)
T ss_pred             hHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccCceeEEEEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHH
Confidence            456788899999999999999999999887543     489999999999999987543        2267899999999


Q ss_pred             HhchhhcCCCCC--ceeccCCCCCeeecCCCCeEEeeccCceecCCC-------CcceeecccccCCCccCcccccc---
Q 044022           77 SLAYLHFGFPRP--IVLRNFKTQNILFNEENVAKWFDFLLSISIPEG-------ETHITTDRVIGTRGYSAPEYISI---  144 (241)
Q Consensus        77 ~l~~lh~~~~~~--ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~-------~~~~~~~~~~~~~~~~aPE~~~~---  144 (241)
                      ||.+||   +..  ..||||||.|||+...+.++++|||.+......       ...+.-.....|..|+|||.+..   
T Consensus       139 gL~~lH---~~~~~yAH~DiKP~NILls~~~~~vl~D~GS~~~a~i~i~~~~~a~~lQe~a~e~Ct~pyRAPELf~vk~~  215 (302)
T KOG2345|consen  139 GLEALH---EKEPPYAHRDIKPANILLSDSGLPVLMDLGSATQAPIQIEGSRQALRLQEWAEERCTIPYRAPELFNVKSH  215 (302)
T ss_pred             HHHHHh---ccCCcccccCCCcceeEecCCCceEEEeccCccccceEeechHHHHHHHHHHHHhCCCcccCchheecccC
Confidence            999999   555  999999999999999999999999998654321       01111123457889999999864   


Q ss_pred             cCCCcchhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHH
Q 044022          145 CVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQL  224 (241)
Q Consensus       145 ~~~~~~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  224 (241)
                      +..+.++|||||||++|.|+.|..||....                 ...+...   .......+..+...-+++.+.++
T Consensus       216 ~ti~ertDIWSLGCtLYa~mf~~sPfe~~~-----------------~~GgSla---LAv~n~q~s~P~~~~yse~l~~l  275 (302)
T KOG2345|consen  216 CTITERTDIWSLGCTLYAMMFGESPFERIY-----------------QQGGSLA---LAVQNAQISIPNSSRYSEALHQL  275 (302)
T ss_pred             cccccccchhhhhHHHHHHHHcCCcchHHh-----------------hcCCeEE---EeeeccccccCCCCCccHHHHHH
Confidence            457899999999999999999999995411                 1111110   11111111122222356889999


Q ss_pred             HHHhccCCCCCCCCCCC
Q 044022          225 TLECVNNSPEDRPTMVD  241 (241)
Q Consensus       225 ~~~cl~~~p~~Rpt~~e  241 (241)
                      +..|++.||.+|||+.|
T Consensus       276 ik~mlqvdP~qRP~i~~  292 (302)
T KOG2345|consen  276 IKSMLQVDPNQRPTIPE  292 (302)
T ss_pred             HHHHhcCCcccCCCHHH
Confidence            99999999999999753

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=100.00  E-value=1.6e-35  Score=242.23  Aligned_cols=200  Identities=20%  Similarity=0.244  Sum_probs=156.4

Q ss_pred             cHHHHHHHHHHHHhcC-CCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQMS-HNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~-h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ....+..|..+++.+. |++|+++++++...+..++||||+++|+|.+++....    .....++.+++.||.|||   +
T Consensus        43 ~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~Ey~~~g~L~~~i~~~~~l~~~~~~~i~~qi~~al~~lH---~  119 (323)
T cd05615          43 DVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFVMEYVNGGDLMYHIQQVGKFKEPQAVFYAAEISVGLFFLH---R  119 (323)
T ss_pred             HHHHHHHHHHHHHhccCCCchhheeeEEecCCEEEEEEcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            4556788999998885 5778889999999999999999999999999886542    256788999999999999   9


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhc
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      ++++||||||+|||++.++.++|+|||++........  ......|++.|+|||++.+..++.++|+||+|+++|+|++|
T Consensus       120 ~~ivHrDikp~Nill~~~~~ikL~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG  197 (323)
T cd05615         120 RGIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMVDGV--TTRTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAG  197 (323)
T ss_pred             CCeeccCCCHHHeEECCCCCEEEeccccccccCCCCc--cccCccCCccccCHHHHcCCCCCCccchhhhHHHHHHHHhC
Confidence            9999999999999999999999999999875432211  11234589999999999988899999999999999999999


Q ss_pred             CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          167 RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                      +.||.....         ......... ...      ....        ..+..+.+++.+||+.+|++|+++.
T Consensus       198 ~~pf~~~~~---------~~~~~~i~~-~~~------~~p~--------~~~~~~~~li~~~l~~~p~~R~~~~  247 (323)
T cd05615         198 QPPFDGEDE---------DELFQSIME-HNV------SYPK--------SLSKEAVSICKGLMTKHPSKRLGCG  247 (323)
T ss_pred             CCCCCCCCH---------HHHHHHHHh-CCC------CCCc--------cCCHHHHHHHHHHcccCHhhCCCCC
Confidence            999965211         111111111 100      0011        1225678999999999999999863

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=100.00  E-value=1.4e-35  Score=237.00  Aligned_cols=204  Identities=19%  Similarity=0.356  Sum_probs=157.7

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----------c---hHHHHHHHHHHHh
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----------L---PRLKIASDIVNSL   78 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----------~---~~~~~~~~i~~~l   78 (241)
                      ..+.+.+|++++++++|+||+++++++......++|+||+++++|.+++....          .   .+..++.+++.||
T Consensus        51 ~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l  130 (275)
T cd05046          51 LQSEFRRELDMFRKLSHKNVVRLLGLCREAEPHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGM  130 (275)
T ss_pred             HHHHHHHHHHHHHhcCCcceeeeEEEECCCCcceEEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHH
Confidence            45679999999999999999999999998889999999999999999986433          1   4677899999999


Q ss_pred             chhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHH
Q 044022           79 AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGA  158 (241)
Q Consensus        79 ~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~  158 (241)
                      +|||   +.+++|+||||+||+++.++.++++|||++........ .......++..|+|||.+.+..++.++||||||+
T Consensus       131 ~~LH---~~~i~H~dlkp~Nili~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~  206 (275)
T cd05046         131 DHLS---NARFVHRDLAARNCLVSSQREVKVSLLSLSKDVYNSEY-YKLRNALIPLRWLAPEAVQEDDFSTKSDVWSFGV  206 (275)
T ss_pred             HHhh---hcCcccCcCccceEEEeCCCcEEEcccccccccCcccc-cccCCceeEEeecChhhhccCCCCchhhHHHHHH
Confidence            9999   89999999999999999999999999998764432211 1112234566799999998888889999999999


Q ss_pred             HHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCC
Q 044022          159 FLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRP  237 (241)
Q Consensus       159 ~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rp  237 (241)
                      ++|++++ |..||.....         ..... ....+... ...   ..        ..+..+.+++.+||+.+|++||
T Consensus       207 ~l~~l~~~~~~p~~~~~~---------~~~~~-~~~~~~~~-~~~---~~--------~~~~~l~~~i~~~l~~~p~~Rp  264 (275)
T cd05046         207 LMWEVFTQGELPFYGLSD---------EEVLN-RLQAGKLE-LPV---PE--------GCPSRLYKLMTRCWAVNPKDRP  264 (275)
T ss_pred             HHHHHHhCCCCCccccch---------HHHHH-HHHcCCcC-CCC---CC--------CCCHHHHHHHHHHcCCCcccCC
Confidence            9999998 7888854211         11111 11111111 000   11        1225789999999999999999


Q ss_pred             CCCC
Q 044022          238 TMVD  241 (241)
Q Consensus       238 t~~e  241 (241)
                      |+.|
T Consensus       265 ~~~~  268 (275)
T cd05046         265 SFSE  268 (275)
T ss_pred             CHHH
Confidence            9864

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=100.00  E-value=7.3e-36  Score=237.50  Aligned_cols=205  Identities=21%  Similarity=0.327  Sum_probs=160.7

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC--------CchHHHHHHHHHHHhchhhc
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA--------PLPRLKIASDIVNSLAYLHF   83 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~--------~~~~~~~~~~i~~~l~~lh~   83 (241)
                      ..+++.+|++++++++|+|++++++++...+..++||||+++++|.+++...        ......++.+++.|+.||| 
T Consensus        45 ~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh-  123 (267)
T cd08224          45 ARQDCLKEIDLLKQLDHPNVIKYLASFIENNELNIVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMH-  123 (267)
T ss_pred             hHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEEecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHH-
Confidence            4677899999999999999999999999999999999999999999988532        1146788999999999999 


Q ss_pred             CCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHH
Q 044022           84 GFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL  163 (241)
Q Consensus        84 ~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~  163 (241)
                        +.+++|+||+|+||+++.++.++|+|||.+.........  .....++..|+|||.+.+..++.++|+||||+++|++
T Consensus       124 --~~~i~h~dl~p~nil~~~~~~~~l~d~~~~~~~~~~~~~--~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~~l  199 (267)
T cd08224         124 --SKRIMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTA--AHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEM  199 (267)
T ss_pred             --hCCEecCCcChhhEEECCCCcEEEeccceeeeccCCCcc--cceecCCccccCHHHhccCCCCchhcHHHHHHHHHHH
Confidence              999999999999999999999999999998765433211  1223578889999999888899999999999999999


Q ss_pred             HhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          164 LAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       164 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ++|+.||....       ....+...... .+.....+            ....+..+.+++.+||..+|++|||+.+
T Consensus       200 ~~g~~p~~~~~-------~~~~~~~~~~~-~~~~~~~~------------~~~~~~~~~~~i~~cl~~~p~~Rp~~~~  257 (267)
T cd08224         200 AALQSPFYGDK-------MNLYSLCKKIE-KCDYPPLP------------ADHYSEELRDLVSRCINPDPEKRPDISY  257 (267)
T ss_pred             HHCCCCcccCC-------ccHHHHHhhhh-cCCCCCCC------------hhhcCHHHHHHHHHHcCCCcccCCCHHH
Confidence            99999985421       11111111111 11111111            1133457889999999999999999853

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=100.00  E-value=2.4e-36  Score=252.66  Aligned_cols=150  Identities=23%  Similarity=0.271  Sum_probs=130.2

Q ss_pred             cHHHHHHHHHHHHhcC-C-----CcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc------hHHHHHHHHHHHhc
Q 044022           12 TYGSCINNITYAAQMS-H-----NHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL------PRLKIASDIVNSLA   79 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~-h-----~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~------~~~~~~~~i~~~l~   79 (241)
                      ...+-..|+.+|..|+ |     -|+|+++++|...++.|||+|.+. -+|.++++.+..      ....++.||+.||.
T Consensus       225 f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~HlciVfELL~-~NLYellK~n~f~Glsl~~ir~~~~Qil~~L~  303 (586)
T KOG0667|consen  225 FLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRNHLCIVFELLS-TNLYELLKNNKFRGLSLPLVRKFAQQILTALL  303 (586)
T ss_pred             HHHHHHHHHHHHHHHhccCCCCCeeEEEeeeccccccceeeeehhhh-hhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Confidence            4566778999999996 4     299999999999999999999996 799999987743      35678999999999


Q ss_pred             hhhcCCCCCceeccCCCCCeeecCC--CCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHH
Q 044022           80 YLHFGFPRPIVLRNFKTQNILFNEE--NVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFG  157 (241)
Q Consensus        80 ~lh~~~~~~ivh~dl~~~nil~~~~--~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G  157 (241)
                      +||   +.+|+|+||||+|||+..-  ..+||+|||.+.......     -+.+.+.+|+|||++.+.+|+.+.||||||
T Consensus       304 ~L~---~l~IIHcDLKPENILL~~~~r~~vKVIDFGSSc~~~q~v-----ytYiQSRfYRAPEVILGlpY~~~IDmWSLG  375 (586)
T KOG0667|consen  304 FLH---ELGIIHCDLKPENILLKDPKRSRIKVIDFGSSCFESQRV-----YTYIQSRFYRAPEVILGLPYDTAIDMWSLG  375 (586)
T ss_pred             HHH---hCCeeeccCChhheeeccCCcCceeEEecccccccCCcc-----eeeeeccccccchhhccCCCCCccceeehh
Confidence            999   9999999999999999654  478999999987544332     145778999999999999999999999999


Q ss_pred             HHHHHHHhcCccc
Q 044022          158 AFLFELLAGRIHI  170 (241)
Q Consensus       158 ~~~~~~~~g~~p~  170 (241)
                      ||+.||++|.+-|
T Consensus       376 CIlAEL~tG~PLf  388 (586)
T KOG0667|consen  376 CILAELFTGEPLF  388 (586)
T ss_pred             hhHHhHhcCcccc
Confidence            9999999997666

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=100.00  E-value=4.6e-35  Score=232.34  Aligned_cols=201  Identities=22%  Similarity=0.289  Sum_probs=155.8

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC------chHHHHHHHHHHHhchhhcCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP------LPRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~------~~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ..+++.+|+.++++++|+|++++++++. ....+++|||+++++|.+++....      .....++.+++.||+|||   
T Consensus        44 ~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH---  119 (260)
T cd05070          44 SPESFLEEAQIMKKLRHDKLVQLYAVVS-EEPIYIVTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIE---  119 (260)
T ss_pred             CHHHHHHHHHHHHhcCCCceEEEEeEEC-CCCcEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            3567999999999999999999999875 456899999999999999986532      146789999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~  165 (241)
                      +.+++|+||+|+||+++.++.++|+|||.+........... ....++..|+|||+..+..++.++|+||||+++|++++
T Consensus       120 ~~~i~H~di~p~Nili~~~~~~~l~dfg~~~~~~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~  198 (260)
T cd05070         120 RMNYIHRDLRSANILVGDGLVCKIADFGLARLIEDNEYTAR-QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVT  198 (260)
T ss_pred             HCCcccCCCccceEEEeCCceEEeCCceeeeeccCcccccc-cCCCCCccccChHHHhcCCCcchhhhHHHHHHHHHHHh
Confidence            89999999999999999999999999999876543321111 11234567999999988889999999999999999999


Q ss_pred             -cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          166 -GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       166 -g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                       |..||....         ..+....... .....     ...        ..+..+.+++.+||..+|++|||++
T Consensus       199 ~g~~p~~~~~---------~~~~~~~~~~-~~~~~-----~~~--------~~~~~~~~li~~~l~~~p~~Rpt~~  251 (260)
T cd05070         199 KGRVPYPGMN---------NREVLEQVER-GYRMP-----CPQ--------DCPISLHELMLQCWKKDPEERPTFE  251 (260)
T ss_pred             cCCCCCCCCC---------HHHHHHHHHc-CCCCC-----CCC--------cCCHHHHHHHHHHcccCcccCcCHH
Confidence             889985421         1122222111 11000     011        2235789999999999999999985

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=100.00  E-value=2.8e-35  Score=237.95  Aligned_cols=204  Identities=17%  Similarity=0.262  Sum_probs=160.6

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc---hHHHHHHHHHHHhchhhcCCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL---PRLKIASDIVNSLAYLHFGFPRP   88 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~i~~~l~~lh~~~~~~   88 (241)
                      ..+.+.+|+.++++++|||++++++++...+..++|+||+++++|..++.....   .+..++.+++.|+.|||   +.+
T Consensus        59 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~l~~~~~~~i~~~l~~al~~LH---~~~  135 (296)
T cd06655          59 KKELIINEILVMKELKNPNIVNFLDSFLVGDELFVVMEYLAGGSLTDVVTETCMDEAQIAAVCRECLQALEFLH---ANQ  135 (296)
T ss_pred             hHHHHHHHHHHHHhcCCCceeeeeeeEecCceEEEEEEecCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH---HCC
Confidence            456788999999999999999999999999999999999999999998876532   56788999999999999   999


Q ss_pred             ceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcCc
Q 044022           89 IVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRI  168 (241)
Q Consensus        89 ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~~  168 (241)
                      ++|+||+|+||+++.++.++|+|||.+.........  .....++..|+|||.+.+..++.++|+||||+++|++++|+.
T Consensus       136 i~H~dL~p~Nili~~~~~~kl~dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~~lltg~~  213 (296)
T cd06655         136 VIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQSK--RSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEP  213 (296)
T ss_pred             cccCCCCHHHEEECCCCCEEEccCccchhccccccc--CCCcCCCccccCcchhcCCCCCchhhHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999988755433211  123457888999999988889999999999999999999999


Q ss_pred             ccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          169 HIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       169 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ||.....         .+......... ......   ..        ..+..+.+++.+||..||++|||+.+
T Consensus       214 pf~~~~~---------~~~~~~~~~~~-~~~~~~---~~--------~~~~~~~~li~~~l~~dp~~Rpt~~~  265 (296)
T cd06655         214 PYLNENP---------LRALYLIATNG-TPELQN---PE--------KLSPIFRDFLNRCLEMDVEKRGSAKE  265 (296)
T ss_pred             CCCCCCH---------HHHHHHHHhcC-CcccCC---cc--------cCCHHHHHHHHHHhhcChhhCCCHHH
Confidence            9954111         11111111111 000000   01        22356889999999999999999753

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=100.00  E-value=2.9e-35  Score=232.85  Aligned_cols=203  Identities=22%  Similarity=0.283  Sum_probs=162.1

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC------chHHHHHHHHHHHhchhhcC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP------LPRLKIASDIVNSLAYLHFG   84 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~------~~~~~~~~~i~~~l~~lh~~   84 (241)
                      ...+++.+|++++++++|+||+++++++...+..++++||+++++|.+++....      .....++.+++.|+.|||  
T Consensus        41 ~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~~~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh--  118 (256)
T cd08221          41 KERRDALNEIVILSLLQHPNIIAYYNHFMDDNTLLIEMEYANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIH--  118 (256)
T ss_pred             hHHHHHHHHHHHHHhCCCCCeeEEEeEEecCCeEEEEEEecCCCcHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHH--
Confidence            456778999999999999999999999999999999999999999999986541      145778999999999999  


Q ss_pred             CCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHH
Q 044022           85 FPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        85 ~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~  164 (241)
                       +.+++|+||+|+||+++.++.++|+|||.+........  ......++..|+|||.+.+..++.++|+||||+++|+|+
T Consensus       119 -~~~i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~~~~~~--~~~~~~~~~~y~ape~~~~~~~~~~~Dv~slG~i~~~l~  195 (256)
T cd08221         119 -KAGILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYS--MAETVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYELL  195 (256)
T ss_pred             -hCCccccCCChHhEEEeCCCCEEECcCcceEEcccccc--cccccCCCccccCHhhcCCCCCCCcchhHHHHHHHHHHH
Confidence             89999999999999999999999999999876544332  123346788999999998888899999999999999999


Q ss_pred             hcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          165 AGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       165 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +|..||...         ...+...... .+......             ...+..+.+++.+||..+|.+|||++|
T Consensus       196 ~g~~~~~~~---------~~~~~~~~~~-~~~~~~~~-------------~~~~~~~~~~i~~~l~~~p~~R~s~~~  249 (256)
T cd08221         196 TLKRTFDAT---------NPLNLVVKIV-QGNYTPVV-------------SVYSSELISLVHSLLQQDPEKRPTADE  249 (256)
T ss_pred             HCCCCCCCC---------CHHHHHHHHH-cCCCCCCc-------------cccCHHHHHHHHHHcccCcccCCCHHH
Confidence            999998541         1112222211 11111110             123357889999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=100.00  E-value=2.7e-35  Score=236.89  Aligned_cols=202  Identities=19%  Similarity=0.278  Sum_probs=157.0

Q ss_pred             HHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC------chHHHHHHHHHHHhchhhcCCC
Q 044022           13 YGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP------LPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~------~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ...+.+|++++++++|+|++++.+.+..++..++++||+++++|.+++....      .....++.|++.||.|||   +
T Consensus        44 ~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH---~  120 (285)
T cd05632          44 ESMALNEKQILEKVNSQFVVNLAYAYETKDALCLVLTIMNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLH---R  120 (285)
T ss_pred             HHHHHHHHHHHHHcCCcCceeEEEEEecCCEEEEEEEeccCccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---h
Confidence            3457889999999999999999999999999999999999999988875321      146788999999999999   9


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhc
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      .+++||||+|+||+++.++.++|+|||.+.........   ....++..|+|||++.+..++.++|+||||+++|++++|
T Consensus       121 ~~iiH~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~---~~~~g~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~g  197 (285)
T cd05632         121 ENTVYRDLKPENILLDDYGHIRISDLGLAVKIPEGESI---RGRVGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEG  197 (285)
T ss_pred             CCeeecCCCHHHEEECCCCCEEEecCCcceecCCCCcc---cCCCCCcCccChHHhcCCCCCcccchHHHHHHHHHHHhC
Confidence            99999999999999999999999999998765432211   234688999999999888899999999999999999999


Q ss_pred             CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          167 RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                      ..||......      ...+..........      .....        ..+..+.+|+..||+.||++|||+.
T Consensus       198 ~~P~~~~~~~------~~~~~~~~~~~~~~------~~~~~--------~~~~~~~~li~~~l~~~P~~R~~~~  251 (285)
T cd05632         198 QSPFRGRKEK------VKREEVDRRVLETE------EVYSA--------KFSEEAKSICKMLLTKDPKQRLGCQ  251 (285)
T ss_pred             CCCCCCCCHH------HHHHHHHHhhhccc------cccCc--------cCCHHHHHHHHHHccCCHhHcCCCc
Confidence            9999642110      00011111000000      00111        1235678999999999999999954

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=100.00  E-value=9.4e-36  Score=237.11  Aligned_cols=206  Identities=20%  Similarity=0.271  Sum_probs=156.6

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ....+.+|+.++++++||||+++++++...+..++|+||+++++|.+++....    .....++.|++.|+.|||   +.
T Consensus        49 ~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~  125 (267)
T cd06646          49 DFSLIQQEIFMVKECKHCNIVAYFGSYLSREKLWICMEYCGGGSLQDIYHVTGPLSELQIAYVCRETLQGLAYLH---SK  125 (267)
T ss_pred             hHHHHHHHHHHHHhcCCCCeeeeeEEEEeCCEEEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HC
Confidence            34567899999999999999999999999999999999999999999875432    246778999999999999   89


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccc---ccCCCcchhhHHHHHHHHHHH
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYIS---ICVLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~---~~~~~~~~Di~s~G~~~~~~~  164 (241)
                      +++|+|++|+||+++.++.++|+|||.+........  ......++..|+|||.+.   ...++.++|+||||+++|+|+
T Consensus       126 ~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~~PE~~~~~~~~~~~~~~Dvws~G~il~el~  203 (267)
T cd06646         126 GKMHRDIKGANILLTDNGDVKLADFGVAAKITATIA--KRKSFIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELA  203 (267)
T ss_pred             CccccCCCHHHEEECCCCCEEECcCccceeeccccc--ccCccccCccccCHhHcccccCCCCcchhhHHHHHHHHHHHH
Confidence            999999999999999999999999999876543211  112345788899999884   345778999999999999999


Q ss_pred             hcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          165 AGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       165 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +|+.||.......        . ... .....   ...+....      ....+..+.+++.+||..+|++|||+++
T Consensus       204 ~g~~p~~~~~~~~--------~-~~~-~~~~~---~~~~~~~~------~~~~~~~~~~li~~~l~~~P~~Rp~~~~  261 (267)
T cd06646         204 ELQPPMFDLHPMR--------A-LFL-MSKSN---FQPPKLKD------KTKWSSTFHNFVKISLTKNPKKRPTAER  261 (267)
T ss_pred             hCCCCccccchhh--------h-hee-eecCC---CCCCCCcc------ccccCHHHHHHHHHHhhCChhhCcCHHH
Confidence            9999985421110        0 000 00000   00111100      0122357899999999999999999864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=100.00  E-value=9.7e-36  Score=236.63  Aligned_cols=216  Identities=22%  Similarity=0.255  Sum_probs=165.5

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC--C---chHHHHHHHHHH
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA--P---LPRLKIASDIVN   76 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~--~---~~~~~~~~~i~~   76 (241)
                      |.+..........++.+|++++++++||||+++++++...+..++++||+++++|.+++...  .   .....++.+++.
T Consensus        32 k~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~  111 (265)
T cd06605          32 KTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAFYNNGDISICMEYMDGGSLDKILKEVQGRIPERILGKIAVAVLK  111 (265)
T ss_pred             EEEecccChHHHHHHHHHHHHHHHCCCCchhhhheeeecCCEEEEEEEecCCCcHHHHHHHccCCCCHHHHHHHHHHHHH
Confidence            44444444455678999999999999999999999999999999999999999999998654  1   145678999999


Q ss_pred             HhchhhcCCC-CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHH
Q 044022           77 SLAYLHFGFP-RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFS  155 (241)
Q Consensus        77 ~l~~lh~~~~-~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s  155 (241)
                      |+.|||   + .+++|+||+|+||+++.++.++|+|||.+........    ....++..|+|||.+.+..++.++|+||
T Consensus       112 ~l~~lH---~~~~i~H~dl~~~ni~~~~~~~~~l~d~g~~~~~~~~~~----~~~~~~~~y~~PE~~~~~~~~~~~Dv~s  184 (265)
T cd06605         112 GLTYLH---EKHKIIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNSLA----KTFVGTSSYMAPERIQGNDYSVKSDIWS  184 (265)
T ss_pred             HHHHHc---CCCCeecCCCCHHHEEECCCCCEEEeecccchhhHHHHh----hcccCChhccCHHHHcCCCCCchhhHHH
Confidence            999999   7 9999999999999999999999999998865533221    1145788899999998889999999999


Q ss_pred             HHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCC
Q 044022          156 FGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPED  235 (241)
Q Consensus       156 ~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~  235 (241)
                      ||+++|++++|+.||......    .....+.........      .+....       ...+..+.+++.+||..||++
T Consensus       185 lG~~l~~l~~g~~p~~~~~~~----~~~~~~~~~~~~~~~------~~~~~~-------~~~~~~~~~li~~~l~~~p~~  247 (265)
T cd06605         185 LGLSLIELATGRFPYPPENDP----PDGIFELLQYIVNEP------PPRLPS-------GKFSPDFQDFVNLCLIKDPRE  247 (265)
T ss_pred             HHHHHHHHHhCCCCCCccccc----cccHHHHHHHHhcCC------CCCCCh-------hhcCHHHHHHHHHHcCCCchh
Confidence            999999999999999652110    011111111111110      001100       013467899999999999999


Q ss_pred             CCCCCC
Q 044022          236 RPTMVD  241 (241)
Q Consensus       236 Rpt~~e  241 (241)
                      |||+.|
T Consensus       248 Rpt~~~  253 (265)
T cd06605         248 RPSYKE  253 (265)
T ss_pred             CcCHHH
Confidence            999753

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.7e-36  Score=238.09  Aligned_cols=211  Identities=22%  Similarity=0.219  Sum_probs=152.3

Q ss_pred             HHHHHHHhcCCCcccceeeeeeeCC-----cceEEEEecCCCCHHHhhcCC-----Cc---hHHHHHHHHHHHhchhhcC
Q 044022           18 NNITYAAQMSHNHILKRIGCCLQTP-----IPILVFQSVEYGTLRDCIFGA-----PL---PRLKIASDIVNSLAYLHFG   84 (241)
Q Consensus        18 ~e~~~l~~l~h~~iv~~~~~~~~~~-----~~~lv~e~~~~~sL~~~l~~~-----~~---~~~~~~~~i~~~l~~lh~~   84 (241)
                      +|+++|+.+.|||||++.-+|....     ...+||||++ .+|.++++..     ..   ...-+..||.+||+|||  
T Consensus        66 rEl~im~~l~HpNIV~L~~~f~~~~~~d~~~lnlVleymP-~tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh--  142 (364)
T KOG0658|consen   66 RELQIMRKLDHPNIVRLLYFFSSSTESDEVYLNLVLEYMP-ETLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLH--  142 (364)
T ss_pred             HHHHHHHhcCCcCeeeEEEEEEecCCCchhHHHHHHHhch-HHHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHH--
Confidence            6999999999999999988887432     4569999998 6999988742     22   23457889999999999  


Q ss_pred             CCCCceeccCCCCCeeecCC-CCeEEeeccCceecCCCCcceeecccccCCCccCccccccc-CCCcchhhHHHHHHHHH
Q 044022           85 FPRPIVLRNFKTQNILFNEE-NVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-VLNEKSNVFSFGAFLFE  162 (241)
Q Consensus        85 ~~~~ivh~dl~~~nil~~~~-~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~~~~  162 (241)
                       +.+|+||||||+|+|+|.+ |.+||+|||.|+.+......   .+...|..|+|||.+.+. .|+.+.||||.||++.|
T Consensus       143 -~~~IcHRDIKPqNlLvD~~tg~LKicDFGSAK~L~~~epn---iSYicSRyYRaPELifga~~Yt~~IDiWSaGCV~aE  218 (364)
T KOG0658|consen  143 -SHGICHRDIKPQNLLVDPDTGVLKICDFGSAKVLVKGEPN---ISYICSRYYRAPELIFGATEYTTSIDIWSAGCVMAE  218 (364)
T ss_pred             -hcCcccCCCChheEEEcCCCCeEEeccCCcceeeccCCCc---eeEEEeccccCHHHHcCccccCceeEEhhhhHHHHH
Confidence             8999999999999999977 89999999999987665432   345788999999999876 68999999999999999


Q ss_pred             HHhcCcccccccccCCCcccchHHHHHHHhh---------hcccCCCCCCccccCCC-chhHHHHHHHHHHHHHHhccCC
Q 044022          163 LLAGRIHIWDLLKDTHDHGCFFNEYLKNYLE---------DKRFTGIPAPIIVQDIP-CIEKEQQLHASAQLTLECVNNS  232 (241)
Q Consensus       163 ~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~cl~~~  232 (241)
                      |+.|++-|....     ......+..+.+--         +....+...+.+....- ........++..+|+.++|.++
T Consensus       219 Ll~g~plFpG~s-----~~dQL~eIik~lG~Pt~e~I~~mn~~y~~~~~p~ik~~~~~~~~~~~~~~d~~dll~~~L~Y~  293 (364)
T KOG0658|consen  219 LLKGQPLFPGDS-----SVDQLVEIIKVLGTPTREDIKSMNPNYTEFKFPQIKAHPWHKVFFKRLPPDALDLLSKLLQYS  293 (364)
T ss_pred             HhcCCcccCCCC-----HHHHHHHHHHHhCCCCHHHHhhcCcccccccCcccccccceeecccCCCHHHHHHHHHHhccC
Confidence            999999885410     11111111111100         11111111111111100 0011233467889999999999


Q ss_pred             CCCCCCCC
Q 044022          233 PEDRPTMV  240 (241)
Q Consensus       233 p~~Rpt~~  240 (241)
                      |++|.|+.
T Consensus       294 P~~R~~~~  301 (364)
T KOG0658|consen  294 PSKRLSAL  301 (364)
T ss_pred             hhhcCCHH
Confidence            99999874

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=100.00  E-value=2.9e-35  Score=236.23  Aligned_cols=204  Identities=20%  Similarity=0.228  Sum_probs=156.7

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC--C---chHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA--P---LPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~--~---~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ..+.+.+|+++++.++|||++++++++...+..++|+||+++++|..++...  .   .....++.+++.||.|||   +
T Consensus        45 ~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~qi~~~L~~LH---~  121 (282)
T cd06643          45 ELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTEPQIRVVCKQTLEALNYLH---E  121 (282)
T ss_pred             HHHHHHHHHHHHHHCCCCCeeeEEEEEeeCCEEEEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            4567889999999999999999999999999999999999999998877532  1   246788999999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccc-----ccCCCcchhhHHHHHHHH
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYIS-----ICVLNEKSNVFSFGAFLF  161 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~-----~~~~~~~~Di~s~G~~~~  161 (241)
                      .+++|+||+|+||+++.++.++++|||.+........  ......++..|+|||++.     ...++.++|+||||+++|
T Consensus       122 ~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvil~  199 (282)
T cd06643         122 NKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQ--RRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLI  199 (282)
T ss_pred             CCeeecCCCcccEEEccCCCEEEcccccccccccccc--ccccccccccccCHhhccccCCCCCCCCccchhhhHHHHHH
Confidence            9999999999999999999999999999865433211  123346788999999984     345778999999999999


Q ss_pred             HHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          162 ELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       162 ~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +|++|+.||....         ..+......... ......   ..        ..+..+.+++.+||+.||++|||+++
T Consensus       200 el~~g~~p~~~~~---------~~~~~~~~~~~~-~~~~~~---~~--------~~~~~~~~li~~~l~~~p~~Rp~~~~  258 (282)
T cd06643         200 EMAQIEPPHHELN---------PMRVLLKIAKSE-PPTLAQ---PS--------RWSSEFKDFLKKCLEKNVDARWTTTQ  258 (282)
T ss_pred             HHccCCCCccccC---------HHHHHHHHhhcC-CCCCCC---cc--------ccCHHHHHHHHHHccCChhhCcCHHH
Confidence            9999999985421         111111111111 001000   01        12357889999999999999999853

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=100.00  E-value=4.6e-35  Score=232.36  Aligned_cols=201  Identities=21%  Similarity=0.276  Sum_probs=155.4

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc------hHHHHHHHHHHHhchhhcCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL------PRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~------~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ..+.+.+|++++++++|+|++++++++. .+..+++|||+++++|.+++.....      ....++.+++.||.|||   
T Consensus        44 ~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH---  119 (260)
T cd05069          44 MPEAFLQEAQIMKKLRHDKLVPLYAVVS-EEPIYIVTEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIE---  119 (260)
T ss_pred             cHHHHHHHHHHHHhCCCCCeeeEEEEEc-CCCcEEEEEcCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            4567899999999999999999999875 4568999999999999999865321      35788999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~  165 (241)
                      +.+++|+||+|+||+++.++.++|+|||.+......... ......++..|+|||+..+...+.++|+||||+++|++++
T Consensus       120 ~~~i~H~dl~~~Nill~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~~l~el~t  198 (260)
T cd05069         120 RMNYIHRDLRAANILVGDNLVCKIADFGLARLIEDNEYT-ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVT  198 (260)
T ss_pred             hCCEeecccCcceEEEcCCCeEEECCCccceEccCCccc-ccCCCccchhhCCHHHhccCCcChHHHHHHHHHHHHHHHh
Confidence            899999999999999999999999999998765432211 1112235667999999988889999999999999999999


Q ss_pred             -cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          166 -GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       166 -g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                       |..||.....         .+...... .....     ....        ..+..+.+++.+||..||++|||++
T Consensus       199 ~g~~p~~~~~~---------~~~~~~~~-~~~~~-----~~~~--------~~~~~~~~li~~~l~~~p~~Rp~~~  251 (260)
T cd05069         199 KGRVPYPGMVN---------REVLEQVE-RGYRM-----PCPQ--------GCPESLHELMKLCWKKDPDERPTFE  251 (260)
T ss_pred             CCCCCCCCCCH---------HHHHHHHH-cCCCC-----CCCc--------ccCHHHHHHHHHHccCCcccCcCHH
Confidence             8999864211         11111111 11100     0111        2236789999999999999999975

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=100.00  E-value=1.5e-35  Score=246.13  Aligned_cols=155  Identities=18%  Similarity=0.218  Sum_probs=130.7

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeC------CcceEEEEecCCCCHHHhhcCCC--chHHHHHHHHHHHhchhh
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQT------PIPILVFQSVEYGTLRDCIFGAP--LPRLKIASDIVNSLAYLH   82 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~------~~~~lv~e~~~~~sL~~~l~~~~--~~~~~~~~~i~~~l~~lh   82 (241)
                      .....+.+|+.+++.++||||+++++++...      ...++||||+. ++|.+.+....  .....++.|++.||.|||
T Consensus        65 ~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~qi~~aL~~LH  143 (364)
T cd07875          65 THAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMD-ANLCQVIQMELDHERMSYLLYQMLCGIKHLH  143 (364)
T ss_pred             hhHHHHHHHHHHHHhcCCCCccccceeecccccccccCeEEEEEeCCC-CCHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Confidence            3456788999999999999999999987643      35799999996 57877765432  245678999999999999


Q ss_pred             cCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHH
Q 044022           83 FGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFE  162 (241)
Q Consensus        83 ~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~  162 (241)
                         +++++||||||+||+++.++.++|+|||++........   .....++..|+|||++.+..++.++||||||+++|+
T Consensus       144 ---~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~e  217 (364)
T cd07875         144 ---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFM---MTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGE  217 (364)
T ss_pred             ---hCCeecCCCCHHHEEECCCCcEEEEeCCCccccCCCCc---ccCCcccCCcCCHHHHhCCCCCchhhHHhHHHHHHH
Confidence               99999999999999999999999999999975543221   123467899999999998899999999999999999


Q ss_pred             HHhcCccccc
Q 044022          163 LLAGRIHIWD  172 (241)
Q Consensus       163 ~~~g~~p~~~  172 (241)
                      |++|+.||..
T Consensus       218 ll~g~~pf~~  227 (364)
T cd07875         218 MIKGGVLFPG  227 (364)
T ss_pred             HHhCCCCCCC
Confidence            9999999954

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=100.00  E-value=5.6e-36  Score=242.55  Aligned_cols=156  Identities=19%  Similarity=0.253  Sum_probs=131.1

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHHHhchhhcCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~~l~~lh~~~   85 (241)
                      .....+.+|++++++++||||+++++++...+..++|+||+. ++|.+++....     .....++.+++.||.|||   
T Consensus        46 ~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~lH---  121 (301)
T cd07873          46 GAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEYLD-KDLKQYLDDCGNSINMHNVKLFLFQLLRGLNYCH---  121 (301)
T ss_pred             CchhHHHHHHHHHHhcCCCCcceEEEEEecCCeEEEEEeccc-cCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            345567899999999999999999999999999999999997 69988876432     135678899999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc-CCCcchhhHHHHHHHHHHH
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-VLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~~~~~~  164 (241)
                      +.+++|+||||+||+++.++.++|+|||.+.........  .....+++.|+|||.+.+. .++.++||||||+++|+|+
T Consensus       122 ~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~--~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~  199 (301)
T cd07873         122 RRKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKT--YSNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMS  199 (301)
T ss_pred             hCCeeCCCCCHHHEEECCCCcEEECcCcchhccCCCCCc--ccccceeecccCcHHHhCCCCCccHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998754332211  1223567889999988654 5788999999999999999


Q ss_pred             hcCccccc
Q 044022          165 AGRIHIWD  172 (241)
Q Consensus       165 ~g~~p~~~  172 (241)
                      +|++||..
T Consensus       200 tg~~~f~~  207 (301)
T cd07873         200 TGRPLFPG  207 (301)
T ss_pred             hCCCCCCC
Confidence            99999964

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=100.00  E-value=1.2e-35  Score=244.81  Aligned_cols=215  Identities=20%  Similarity=0.340  Sum_probs=158.0

Q ss_pred             cccccccccccHHHHHHHHHHHHhc-CCCcccceeeeeeeC-CcceEEEEecCCCCHHHhhcCCC---------------
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQM-SHNHILKRIGCCLQT-PIPILVFQSVEYGTLRDCIFGAP---------------   64 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~-~~~~lv~e~~~~~sL~~~l~~~~---------------   64 (241)
                      |...........+.+.+|+.++.++ +||||+++++++... ...++++||+++|+|.+++....               
T Consensus        43 K~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~~~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~  122 (343)
T cd05103          43 KMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQ  122 (343)
T ss_pred             EEeccCCChHHHHHHHHHHHHHHhccCCccHhhhcceeecCCCceEEEEeccCCCcHHHHHHhcCCcccccccccccccc
Confidence            4444333334456788999999999 689999999988754 46789999999999999875321               


Q ss_pred             --------------------------------------------------------chHHHHHHHHHHHhchhhcCCCCC
Q 044022           65 --------------------------------------------------------LPRLKIASDIVNSLAYLHFGFPRP   88 (241)
Q Consensus        65 --------------------------------------------------------~~~~~~~~~i~~~l~~lh~~~~~~   88 (241)
                                                                              .....++.+++.||+|||   +++
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~  199 (343)
T cd05103         123 GKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAEQEDLYKKVLTLEDLICYSFQVAKGMEFLA---SRK  199 (343)
T ss_pred             ccccccchhhhhhhhccccccccccccccccCCCccccchhhhhhhhhhhhccCCHHHHHHHHHHHHHHHHHHH---hCC
Confidence                                                                    023568899999999999   999


Q ss_pred             ceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh-cC
Q 044022           89 IVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA-GR  167 (241)
Q Consensus        89 ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~-g~  167 (241)
                      ++||||||+||+++.++.++|+|||++................++..|+|||.+.+..++.++||||||+++|++++ |.
T Consensus       200 i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~  279 (343)
T cd05103         200 CIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGA  279 (343)
T ss_pred             eecCCCccCeEEEcCCCcEEEEecccccccccCcchhhcCCCCCCcceECcHHhcCCCCCchhhHHHHHHHHHHHHHCCC
Confidence            99999999999999999999999999876533322222223345677999999988889999999999999999997 88


Q ss_pred             cccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          168 IHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       168 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      .||......        ....... ..+.....+     .        ..++.+.+++..||+.||++|||+.|
T Consensus       280 ~p~~~~~~~--------~~~~~~~-~~~~~~~~~-----~--------~~~~~~~~~~~~cl~~~p~~Rps~~e  331 (343)
T cd05103         280 SPYPGVKID--------EEFCRRL-KEGTRMRAP-----D--------YTTPEMYQTMLDCWHGEPSQRPTFSE  331 (343)
T ss_pred             CCCCCcccc--------HHHHHHH-hccCCCCCC-----C--------CCCHHHHHHHHHHccCChhhCcCHHH
Confidence            898542110        1111111 111111111     0        11246889999999999999999864

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.2e-35  Score=237.80  Aligned_cols=213  Identities=18%  Similarity=0.310  Sum_probs=163.9

Q ss_pred             cccccccccccHHHHHHHHHHHHhcC---CCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc---hHHHHHHHHH
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMS---HNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL---PRLKIASDIV   75 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~---h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~i~   75 (241)
                      |.+..........++.+|+.++++++   |||++++++++......++|+||+++++|.+++.....   ..+.++.+++
T Consensus        32 K~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~l~~~~~~~i~~~i~  111 (277)
T cd06917          32 KIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGPRLWIIMEYAEGGSVRTLMKAGPIAEKYISVIIREVL  111 (277)
T ss_pred             EEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCCEEEEEEecCCCCcHHHHHHccCCCHHHHHHHHHHHH
Confidence            55544444455677889999999997   99999999999999999999999999999999876543   4577899999


Q ss_pred             HHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc-CCCcchhhH
Q 044022           76 NSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-VLNEKSNVF  154 (241)
Q Consensus        76 ~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~  154 (241)
                      .|+.|||   +.+++|+||+|+||+++.++.++++|||.+.........  .....++..|+|||.+.+. .++.++|+|
T Consensus       112 ~~l~~lh---~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~  186 (277)
T cd06917         112 VALKYIH---KVGVIHRDIKAANILVTNTGNVKLCDFGVAALLNQNSSK--RSTFVGTPYWMAPEVITEGKYYDTKADIW  186 (277)
T ss_pred             HHHHHHH---hCCcccCCcCHHHEEEcCCCCEEEccCCceeecCCCccc--cccccCCcceeCHHHhccCCccccchhHH
Confidence            9999999   999999999999999999999999999998766543321  1234678889999988654 568899999


Q ss_pred             HHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCC
Q 044022          155 SFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPE  234 (241)
Q Consensus       155 s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~  234 (241)
                      |||+++|+|++|..||......         ......      .....+.+...       ..+..+.+++.+||..||+
T Consensus       187 slG~~l~~ll~g~~p~~~~~~~---------~~~~~~------~~~~~~~~~~~-------~~~~~~~~~i~~~l~~~p~  244 (277)
T cd06917         187 SLGITIYEMATGNPPYSDVDAF---------RAMMLI------PKSKPPRLEDN-------GYSKLLREFVAACLDEEPK  244 (277)
T ss_pred             HHHHHHHHHHhCCCCCCCCChh---------hhhhcc------ccCCCCCCCcc-------cCCHHHHHHHHHHcCCCcc
Confidence            9999999999999999542110         000000      00011111111       1335788999999999999


Q ss_pred             CCCCCCC
Q 044022          235 DRPTMVD  241 (241)
Q Consensus       235 ~Rpt~~e  241 (241)
                      +|||+.|
T Consensus       245 ~R~~~~~  251 (277)
T cd06917         245 ERLSAEE  251 (277)
T ss_pred             cCcCHHH
Confidence            9999753

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=2.8e-35  Score=236.48  Aligned_cols=214  Identities=25%  Similarity=0.322  Sum_probs=155.2

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeC--CcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHHHhchhhcC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQT--PIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVNSLAYLHFG   84 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~--~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~~l~~lh~~   84 (241)
                      ..+.+.+|++++++++||||+++++++...  ...++|+||+++++|.+++....     .....++.+++.||.|||  
T Consensus        48 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~aL~~LH--  125 (284)
T cd05081          48 HLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLRLVMEYLPYGSLRDYLQKHRERLDHRKLLLYASQICKGMEYLG--  125 (284)
T ss_pred             HHHHHHHHHHHHHhCCCCCeeEEEEEEccCCCCceEEEEEecCCCCHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHH--
Confidence            456789999999999999999999987543  46889999999999999986432     246788999999999999  


Q ss_pred             CCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCccee-ecccccCCCccCcccccccCCCcchhhHHHHHHHHHH
Q 044022           85 FPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHIT-TDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL  163 (241)
Q Consensus        85 ~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~-~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~  163 (241)
                       +.+++|+||||+||+++.++.++|+|||.+........... .....++..|+|||++.+..++.++|+||||+++|+|
T Consensus       126 -~~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el  204 (284)
T cd05081         126 -SKRYVHRDLATRNILVESENRVKIGDFGLTKVLPQDKEYYKVREPGESPIFWYAPESLTESKFSVASDVWSFGVVLYEL  204 (284)
T ss_pred             -HCCceeccCCHhhEEECCCCeEEECCCcccccccCCCcceeecCCCCCceEeeCHHHhccCCcChHHHHHHHHHHHHHH
Confidence             89999999999999999999999999999886644322111 1112234569999999888899999999999999999


Q ss_pred             HhcCcccccccccCC------CcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCC
Q 044022          164 LAGRIHIWDLLKDTH------DHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRP  237 (241)
Q Consensus       164 ~~g~~p~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rp  237 (241)
                      ++|..|+........      .....................     ..        ...+..+.+++.+||+.+|++||
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--------~~~~~~~~~li~~cl~~~p~~Rp  271 (284)
T cd05081         205 FTYSDKSCSPPAEFMRMMGNDKQGQMIVYHLIELLKNNGRLP-----AP--------PGCPAEIYAIMKECWNNDPSQRP  271 (284)
T ss_pred             hhcCCcCCCcchhhhhhcccccccccchHHHHHHHhcCCcCC-----CC--------CCCCHHHHHHHHHHccCChhhCC
Confidence            998776543211100      000000011111111110000     00        12235789999999999999999


Q ss_pred             CCCC
Q 044022          238 TMVD  241 (241)
Q Consensus       238 t~~e  241 (241)
                      |+.|
T Consensus       272 t~~e  275 (284)
T cd05081         272 SFSE  275 (284)
T ss_pred             CHHH
Confidence            9864

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=100.00  E-value=4.8e-35  Score=232.60  Aligned_cols=202  Identities=23%  Similarity=0.303  Sum_probs=155.8

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC------chHHHHHHHHHHHhchhhcCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP------LPRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~------~~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ...+|.+|++++++++|+||+++++.+. ....++||||+++++|.+++....      .....++.+++.||+|||   
T Consensus        44 ~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH---  119 (262)
T cd05071          44 SPEAFLQEAQVMKKLRHEKLVQLYAVVS-EEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVE---  119 (262)
T ss_pred             CHHHHHHHHHHHHhCCCCCcceEEEEEC-CCCcEEEEEcCCCCcHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHH---
Confidence            3567899999999999999999999874 456899999999999999987531      146788999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~  165 (241)
                      +.+++|+||+|+||+++.++.++|+|||.+......... ......++..|+|||+..+..++.++|+||||+++|++++
T Consensus       120 ~~~i~H~dl~p~Nill~~~~~~~L~dfg~~~~~~~~~~~-~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~ellt  198 (262)
T cd05071         120 RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYT-ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTT  198 (262)
T ss_pred             HCCccccccCcccEEEcCCCcEEeccCCceeeccccccc-cccCCcccceecCHhHhccCCCCchhhHHHHHHHHHHHHc
Confidence            899999999999999999999999999998765433211 1122345677999999988889999999999999999999


Q ss_pred             -cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          166 -GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       166 -g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                       |..||.....         .+...... .....  .   ..        ...+..+.+++.+||+.||++|||+.+
T Consensus       199 ~g~~p~~~~~~---------~~~~~~~~-~~~~~--~---~~--------~~~~~~l~~li~~~l~~~p~~Rp~~~~  252 (262)
T cd05071         199 KGRVPYPGMVN---------REVLDQVE-RGYRM--P---CP--------PECPESLHDLMCQCWRKEPEERPTFEY  252 (262)
T ss_pred             CCCCCCCCCCh---------HHHHHHHh-cCCCC--C---Cc--------cccCHHHHHHHHHHccCCcccCCCHHH
Confidence             8888854211         11111111 11000  0   00        123467899999999999999999753

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=100.00  E-value=1.8e-35  Score=235.17  Aligned_cols=206  Identities=19%  Similarity=0.295  Sum_probs=159.2

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ....+.+|++++++++|+||+++++++...+..++++||+++++|.+++.....    ....++.+++.|++|||   +.
T Consensus        45 ~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH---~~  121 (265)
T cd06631          45 EYEKLQEEVDLLKSLKHVNIVQYLGTCLDDNTISIFMEFVPGGSISSILNRFGPLPEPVFCKYTKQILDGVAYLH---NN  121 (265)
T ss_pred             HHHHHHHHHHHHHhcCCCCEeeEeeEeecCCeEEEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hC
Confidence            346688999999999999999999999999999999999999999999865322    45678899999999999   89


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCCc----ceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHH
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGET----HITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL  163 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~----~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~  163 (241)
                      +++|+||+|+||+++.++.++|+|||.+........    ........++..|+|||++.+..++.++|+||||+++|++
T Consensus       122 ~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l  201 (265)
T cd06631         122 CVVHRDIKGNNVMLMPNGIIKLIDFGCARRLAWVGLHGTHSNMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEM  201 (265)
T ss_pred             CcccCCcCHHhEEECCCCeEEeccchhhHhhhhccccccccccccccCCCccccChhhhcCCCCcchhhHHHHHHHHHHH
Confidence            999999999999999999999999998865432111    1111234578889999999988889999999999999999


Q ss_pred             HhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          164 LAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       164 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ++|..||......        .............     +....        ..+..+.+++++||+.+|++|||++|
T Consensus       202 ~~g~~p~~~~~~~--------~~~~~~~~~~~~~-----~~~~~--------~~~~~~~~~i~~~l~~~p~~Rp~~~~  258 (265)
T cd06631         202 ATGKPPLASMDRL--------AAMFYIGAHRGLM-----PRLPD--------SFSAAAIDFVTSCLTRDQHERPSALQ  258 (265)
T ss_pred             HhCCCccccCChH--------HHHHHhhhccCCC-----CCCCC--------CCCHHHHHHHHHHhcCCcccCCCHHH
Confidence            9999999542110        0000000000111     11111        23367899999999999999999864

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=100.00  E-value=1.4e-35  Score=245.60  Aligned_cols=155  Identities=19%  Similarity=0.213  Sum_probs=130.3

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCC------cceEEEEecCCCCHHHhhcCCC--chHHHHHHHHHHHhchhh
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTP------IPILVFQSVEYGTLRDCIFGAP--LPRLKIASDIVNSLAYLH   82 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~------~~~lv~e~~~~~sL~~~l~~~~--~~~~~~~~~i~~~l~~lh   82 (241)
                      .....+.+|+.+++.++||||+++++++....      ..++||||+. ++|.+.+...-  .....++.|++.||.|||
T Consensus        58 ~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~l~~~~~~~~~~qi~~aL~~LH  136 (355)
T cd07874          58 THAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLEEFQDVYLVMELMD-ANLCQVIQMELDHERMSYLLYQMLCGIKHLH  136 (355)
T ss_pred             HHHHHHHHHHHHHHHhCCCchhceeeeeeccccccccceeEEEhhhhc-ccHHHHHhhcCCHHHHHHHHHHHHHHHHHHH
Confidence            34567889999999999999999999886432      4699999997 57777665432  245678999999999999


Q ss_pred             cCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHH
Q 044022           83 FGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFE  162 (241)
Q Consensus        83 ~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~  162 (241)
                         +.+++||||||+||+++.++.+||+|||++........   .....++..|+|||++.+..++.++||||||+++|+
T Consensus       137 ---~~givHrDikp~Nill~~~~~~kl~Dfg~~~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~e  210 (355)
T cd07874         137 ---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFM---MTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGE  210 (355)
T ss_pred             ---hCCcccCCCChHHEEECCCCCEEEeeCcccccCCCccc---cCCccccCCccCHHHHcCCCCCchhhHHHHHHHHHH
Confidence               99999999999999999999999999999876543221   123468899999999998889999999999999999


Q ss_pred             HHhcCccccc
Q 044022          163 LLAGRIHIWD  172 (241)
Q Consensus       163 ~~~g~~p~~~  172 (241)
                      |++|+.||..
T Consensus       211 l~~g~~pf~~  220 (355)
T cd07874         211 MVRHKILFPG  220 (355)
T ss_pred             HHhCCCCCCC
Confidence            9999999954

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.5e-36  Score=244.06  Aligned_cols=202  Identities=20%  Similarity=0.283  Sum_probs=165.3

Q ss_pred             cccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc-----hHHHHHHHHHHHhchhhcC
Q 044022           10 RHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL-----PRLKIASDIVNSLAYLHFG   84 (241)
Q Consensus        10 ~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-----~~~~~~~~i~~~l~~lh~~   84 (241)
                      .-...++.+|++.|+.++|||||++|++...+..+|+|+|+=.+|+|++|+-++..     -..+++.||+.|+.|+|  
T Consensus        58 ~~st~hlfqEVRCMKLVQHpNiVRLYEViDTQTKlyLiLELGD~GDl~DyImKHe~Gl~E~La~kYF~QI~~AI~YCH--  135 (864)
T KOG4717|consen   58 TLSTGHLFQEVRCMKLVQHPNIVRLYEVIDTQTKLYLILELGDGGDLFDYIMKHEEGLNEDLAKKYFAQIVHAISYCH--  135 (864)
T ss_pred             hhhhhHHHHHHHHHHHhcCcCeeeeeehhcccceEEEEEEecCCchHHHHHHhhhccccHHHHHHHHHHHHHHHHHHh--
Confidence            34567788999999999999999999999999999999999999999999977643     35689999999999999  


Q ss_pred             CCCCceeccCCCCCeeec-CCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCC-cchhhHHHHHHHHH
Q 044022           85 FPRPIVLRNFKTQNILFN-EENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLN-EKSNVFSFGAFLFE  162 (241)
Q Consensus        85 ~~~~ivh~dl~~~nil~~-~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~-~~~Di~s~G~~~~~  162 (241)
                       +..+|||||||+|+.+. +-|-+|+.|||++..+..+...   ++.+|+..|-|||.+.+..|+ +++||||||+|+|.
T Consensus       136 -qLHVVHRDLKPENVVFFEKlGlVKLTDFGFSNkf~PG~kL---~TsCGSLAYSAPEILLGDsYDAPAVDiWSLGVILyM  211 (864)
T KOG4717|consen  136 -QLHVVHRDLKPENVVFFEKLGLVKLTDFGFSNKFQPGKKL---TTSCGSLAYSAPEILLGDSYDAPAVDIWSLGVILYM  211 (864)
T ss_pred             -hhhhhcccCCcceeEEeeecCceEeeeccccccCCCcchh---hcccchhhccCchhhhcCccCCcchhhhHHHHHHHH
Confidence             99999999999998875 5589999999999877665433   445899999999999998876 78899999999999


Q ss_pred             HHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          163 LLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       163 ~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ++.|++||......         +.+.....-.               ...+..-+.++++||..||..||++|.|.+|
T Consensus       212 LVCGq~PFqeANDS---------ETLTmImDCK---------------YtvPshvS~eCrdLI~sMLvRdPkkRAslEe  266 (864)
T KOG4717|consen  212 LVCGQPPFQEANDS---------ETLTMIMDCK---------------YTVPSHVSKECRDLIQSMLVRDPKKRASLEE  266 (864)
T ss_pred             HHhCCCccccccch---------hhhhhhhccc---------------ccCchhhhHHHHHHHHHHHhcCchhhccHHH
Confidence            99999999763322         1111111111               0111255678999999999999999998764

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=100.00  E-value=1.4e-35  Score=239.90  Aligned_cols=204  Identities=18%  Similarity=0.256  Sum_probs=159.9

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc---hHHHHHHHHHHHhchhhcCCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL---PRLKIASDIVNSLAYLHFGFPRP   88 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~i~~~l~~lh~~~~~~   88 (241)
                      ..+.+.+|+.+++.++|+|++++++++..++..++|+||+++++|.+++.....   ....++.+++.||.|||   +.+
T Consensus        59 ~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~LH---~~~  135 (297)
T cd06656          59 KKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALDFLH---SNQ  135 (297)
T ss_pred             hHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEeecccCCCCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH---HCC
Confidence            456788999999999999999999999999999999999999999999866432   56788999999999999   899


Q ss_pred             ceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcCc
Q 044022           89 IVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRI  168 (241)
Q Consensus        89 ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~~  168 (241)
                      ++|+||+|+||+++.++.++|+|||.+.........  .....+++.|+|||.+.+..++.++|+||||+++|++++|..
T Consensus       136 i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slGvil~~l~tg~~  213 (297)
T cd06656         136 VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK--RSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEP  213 (297)
T ss_pred             cccCCCCHHHEEECCCCCEEECcCccceEccCCccC--cCcccCCccccCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999998765433211  123457888999999998888999999999999999999999


Q ss_pred             ccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          169 HIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       169 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ||.......         ........+    .+....        ....+..+.+++.+||..+|++|||++|
T Consensus       214 pf~~~~~~~---------~~~~~~~~~----~~~~~~--------~~~~~~~~~~li~~~l~~~p~~Rps~~~  265 (297)
T cd06656         214 PYLNENPLR---------ALYLIATNG----TPELQN--------PERLSAVFRDFLNRCLEMDVDRRGSAKE  265 (297)
T ss_pred             CCCCCCcch---------heeeeccCC----CCCCCC--------ccccCHHHHHHHHHHccCChhhCcCHHH
Confidence            995411100         000000000    000000        0123356789999999999999999864

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=100.00  E-value=3.5e-35  Score=232.46  Aligned_cols=199  Identities=21%  Similarity=0.301  Sum_probs=155.1

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeee-eCCcceEEEEecCCCCHHHhhcCCC------chHHHHHHHHHHHhchhhcC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCL-QTPIPILVFQSVEYGTLRDCIFGAP------LPRLKIASDIVNSLAYLHFG   84 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~lv~e~~~~~sL~~~l~~~~------~~~~~~~~~i~~~l~~lh~~   84 (241)
                      ..+.+.+|+.++++++|+|++++++++. ..+..++++||+++++|.+++....      ...+.++.+++.||.|||  
T Consensus        42 ~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH--  119 (256)
T cd05082          42 TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE--  119 (256)
T ss_pred             hHHHHHHHHHHHHhCCCCCeeeEEEEEEcCCCceEEEEECCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH--
Confidence            3567899999999999999999999765 4457899999999999999986542      145788999999999999  


Q ss_pred             CCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHH
Q 044022           85 FPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        85 ~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~  164 (241)
                       +.+++|+||||+||+++.++.++++|||.+.......     .....+..|+|||++....++.++||||||+++|+|+
T Consensus       120 -~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~  193 (256)
T cd05082         120 -ANNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ-----DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIY  193 (256)
T ss_pred             -hCCEeccccchheEEEcCCCcEEecCCccceeccccC-----CCCccceeecCHHHHccCCCCchhhhHHHHHHHHHHH
Confidence             8999999999999999999999999999987544322     1223456799999998888999999999999999999


Q ss_pred             h-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          165 A-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       165 ~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      + |+.||...         ...+....... ....     ....        ..+..+.+++.+||+.+|++|||+.+
T Consensus       194 ~~g~~p~~~~---------~~~~~~~~~~~-~~~~-----~~~~--------~~~~~~~~li~~~l~~~p~~Rpt~~~  248 (256)
T cd05082         194 SFGRVPYPRI---------PLKDVVPRVEK-GYKM-----DAPD--------GCPPVVYDVMKQCWHLDAATRPSFLQ  248 (256)
T ss_pred             hCCCCCCCCC---------CHHHHHHHHhc-CCCC-----CCCC--------CCCHHHHHHHHHHhcCChhhCcCHHH
Confidence            7 99998541         11122222111 1110     1111        22357889999999999999999854

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=100.00  E-value=8.7e-36  Score=228.59  Aligned_cols=207  Identities=20%  Similarity=0.236  Sum_probs=165.6

Q ss_pred             HHHHHHHHHHHHhc-CCCcccceeeeeee----CCcceEEEEecCCCCHHHhhcCCCc------hHHHHHHHHHHHhchh
Q 044022           13 YGSCINNITYAAQM-SHNHILKRIGCCLQ----TPIPILVFQSVEYGTLRDCIFGAPL------PRLKIASDIVNSLAYL   81 (241)
Q Consensus        13 ~~~~~~e~~~l~~l-~h~~iv~~~~~~~~----~~~~~lv~e~~~~~sL~~~l~~~~~------~~~~~~~~i~~~l~~l   81 (241)
                      .+...+|+++--.. .|||||.+++++.+    ...+.+|||.|+||.|++.++....      ..-.++++|..|+.||
T Consensus        98 s~KARrEVeLHw~~s~h~~iV~IidVyeNs~~~rkcLLiVmE~meGGeLfsriq~~g~~afTErea~eI~~qI~~Av~~l  177 (400)
T KOG0604|consen   98 SPKARREVELHWMASGHPHIVSIIDVYENSYQGRKCLLIVMECMEGGELFSRIQDRGDQAFTEREASEIMKQIGLAVRYL  177 (400)
T ss_pred             CHHHHhHhhhhhhhcCCCceEEeehhhhhhccCceeeEeeeecccchHHHHHHHHcccccchHHHHHHHHHHHHHHHHHH
Confidence            34456788766555 79999999999875    3478899999999999999987643      3567999999999999


Q ss_pred             hcCCCCCceeccCCCCCeeecC---CCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHH
Q 044022           82 HFGFPRPIVLRNFKTQNILFNE---ENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGA  158 (241)
Q Consensus        82 h~~~~~~ivh~dl~~~nil~~~---~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~  158 (241)
                      |   +.+|.||||||+|+|...   +..+||+|||+++.......   ..+.+.|++|.|||++-..+++..+|+||+|+
T Consensus       178 H---~~nIAHRDlKpENLLyt~t~~na~lKLtDfGFAK~t~~~~~---L~TPc~TPyYvaPevlg~eKydkscdmwSlgV  251 (400)
T KOG0604|consen  178 H---SMNIAHRDLKPENLLYTTTSPNAPLKLTDFGFAKETQEPGD---LMTPCFTPYYVAPEVLGPEKYDKSCDMWSLGV  251 (400)
T ss_pred             H---hcchhhccCChhheeeecCCCCcceEecccccccccCCCcc---ccCCcccccccCHHHhCchhcCCCCCccchhH
Confidence            9   999999999999999954   46789999999987654322   24457899999999999999999999999999


Q ss_pred             HHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCC
Q 044022          159 FLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT  238 (241)
Q Consensus       159 ~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt  238 (241)
                      ++|-|+.|.+||++.-..      -+.-.++.....+.+          .+|..+...-+++.+++|+.+|..+|++|.|
T Consensus       252 imYIlLCGyPPFYS~hg~------aispgMk~rI~~gqy----------~FP~pEWs~VSe~aKdlIR~LLkt~PteRlT  315 (400)
T KOG0604|consen  252 IMYILLCGYPPFYSNHGL------AISPGMKRRIRTGQY----------EFPEPEWSCVSEAAKDLIRKLLKTEPTERLT  315 (400)
T ss_pred             HHHHhhcCCCcccccCCc------cCChhHHhHhhccCc----------cCCChhHhHHHHHHHHHHHHHhcCCchhhee
Confidence            999999999999873222      222234444444433          2444555678889999999999999999999


Q ss_pred             CCC
Q 044022          239 MVD  241 (241)
Q Consensus       239 ~~e  241 (241)
                      ++|
T Consensus       316 I~~  318 (400)
T KOG0604|consen  316 IEE  318 (400)
T ss_pred             HHH
Confidence            864

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=100.00  E-value=5.9e-36  Score=248.25  Aligned_cols=159  Identities=16%  Similarity=0.214  Sum_probs=136.3

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      .....+.+|+.++.+++|+||+++++++...+..++||||+++|+|.+++.....    ....++.|++.||.|||   +
T Consensus        43 ~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~~L~~lH---~  119 (360)
T cd05627          43 EQVAHIRAERDILVEADGAWVVKMFYSFQDKRNLYLIMEFLPGGDMMTLLMKKDTLSEEATQFYIAETVLAIDAIH---Q  119 (360)
T ss_pred             hhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEEeCCCCccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            3456788899999999999999999999999999999999999999999865432    45678999999999999   9


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcc---------------------------------eeecccccC
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH---------------------------------ITTDRVIGT  133 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~---------------------------------~~~~~~~~~  133 (241)
                      ++++||||||+|||++.++.++|+|||++.........                                 .......||
T Consensus       120 ~givHrDLkp~NIli~~~~~vkL~DfG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt  199 (360)
T cd05627         120 LGFIHRDIKPDNLLLDAKGHVKLSDFGLCTGLKKAHRTEFYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGT  199 (360)
T ss_pred             CCeEccCCCHHHEEECCCCCEEEeeccCCcccccccccccccccccCCcccccccccccccccccccccccccccccCCC
Confidence            99999999999999999999999999998644221000                                 001134689


Q ss_pred             CCccCcccccccCCCcchhhHHHHHHHHHHHhcCccccc
Q 044022          134 RGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       134 ~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~~p~~~  172 (241)
                      +.|+|||++.+..++.++|||||||++|+|++|+.||..
T Consensus       200 ~~Y~APE~~~~~~~~~~~DiwSlGvilyel~tG~~Pf~~  238 (360)
T cd05627         200 PDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCS  238 (360)
T ss_pred             ccccCHHHHcCCCCCCcceeccccceeeecccCCCCCCC
Confidence            999999999988999999999999999999999999965

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=100.00  E-value=4.5e-35  Score=233.20  Aligned_cols=206  Identities=20%  Similarity=0.273  Sum_probs=157.2

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ....+.+|+.+++.++||||+++++++...+..++|+||+++++|.+++....    .....++.+++.|+.|||   +.
T Consensus        49 ~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~  125 (267)
T cd06645          49 DFAVVQQEIIMMKDCKHSNIVAYFGSYLRRDKLWICMEFCGGGSLQDIYHVTGPLSESQIAYVSRETLQGLYYLH---SK  125 (267)
T ss_pred             HHHHHHHHHHHHHhCCCCCeeeEEEEEEeCCEEEEEEeccCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HC
Confidence            34567889999999999999999999999999999999999999999886543    256788999999999999   89


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccc---ccCCCcchhhHHHHHHHHHHH
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYIS---ICVLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~---~~~~~~~~Di~s~G~~~~~~~  164 (241)
                      +++|+||||+||+++.++.++|+|||.+.......  .......++..|+|||++.   ...++.++|+||||+++|+|+
T Consensus       126 ~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l~  203 (267)
T cd06645         126 GKMHRDIKGANILLTDNGHVKLADFGVSAQITATI--AKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELA  203 (267)
T ss_pred             CeecCCCCHHHEEECCCCCEEECcceeeeEccCcc--cccccccCcccccChhhhccccCCCCCchhhhHHHHHHHHHHh
Confidence            99999999999999999999999999987654321  1123346888999999874   345788999999999999999


Q ss_pred             hcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          165 AGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       165 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +|..||......         ........ ...   ..+......      ..+..+.+++.+||..+|++|||+++
T Consensus       204 ~~~~p~~~~~~~---------~~~~~~~~-~~~---~~~~~~~~~------~~~~~~~~li~~~l~~~P~~R~~~~~  261 (267)
T cd06645         204 ELQPPMFDLHPM---------RALFLMTK-SNF---QPPKLKDKM------KWSNSFHHFVKMALTKNPKKRPTAEK  261 (267)
T ss_pred             cCCCCcccccch---------hhHHhhhc-cCC---CCCcccccC------CCCHHHHHHHHHHccCCchhCcCHHH
Confidence            999998542110         00001000 100   011110000      12246889999999999999999863

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=100.00  E-value=6.5e-35  Score=235.31  Aligned_cols=204  Identities=20%  Similarity=0.256  Sum_probs=155.9

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC-----CchHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA-----PLPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~-----~~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ..+++.+|++++++++|+|++++++.+..++..++||||+++++|..++...     ...+..++.|++.|+.|||   +
T Consensus        52 ~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH---~  128 (292)
T cd06644          52 ELEDYMVEIEILATCNHPYIVKLLGAFYWDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVICRQMLEALQYLH---S  128 (292)
T ss_pred             HHHHHHHHHHHHHhCCCCcEeeeEEEEEeCCeEEEEEecCCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHh---c
Confidence            4667889999999999999999999999999999999999999998876432     1246789999999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccc-----ccCCCcchhhHHHHHHHH
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYIS-----ICVLNEKSNVFSFGAFLF  161 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~-----~~~~~~~~Di~s~G~~~~  161 (241)
                      .+++|+||+|+||+++.++.++|+|||.+........  ......++..|+|||++.     ...++.++|+||||+++|
T Consensus       129 ~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~  206 (292)
T cd06644         129 MKIIHRDLKAGNVLLTLDGDIKLADFGVSAKNVKTLQ--RRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLI  206 (292)
T ss_pred             CCeeecCCCcceEEEcCCCCEEEccCccceecccccc--ccceecCCccccCceeeccccccCCCCCchhhhHhHHHHHH
Confidence            9999999999999999999999999998765433211  112345788999999985     345678999999999999


Q ss_pred             HHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          162 ELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       162 ~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +|++|..||.....         .+.........      .+....      ....+..+.+++.+||..||++|||++|
T Consensus       207 el~~g~~p~~~~~~---------~~~~~~~~~~~------~~~~~~------~~~~~~~~~~li~~~l~~~p~~Rp~~~~  265 (292)
T cd06644         207 EMAQIEPPHHELNP---------MRVLLKIAKSE------PPTLSQ------PSKWSMEFRDFLKTALDKHPETRPSAAQ  265 (292)
T ss_pred             HHhcCCCCCccccH---------HHHHHHHhcCC------CccCCC------CcccCHHHHHHHHHHhcCCcccCcCHHH
Confidence            99999999854211         11111111100      000000      0122356889999999999999999754

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=100.00  E-value=1.3e-35  Score=247.16  Aligned_cols=156  Identities=22%  Similarity=0.282  Sum_probs=130.9

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCC-----cceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhh
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTP-----IPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLH   82 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~-----~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh   82 (241)
                      ..+++.+|+++++.++|+||+++++++...+     ..++|+||+. ++|.+.+.....    ....++.|++.||.|||
T Consensus        42 ~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH  120 (372)
T cd07853          42 SCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEEIYVVTELMQ-SDLHKIIVSPQPLSSDHVKVFLYQILRGLKYLH  120 (372)
T ss_pred             HHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccceEEEEeeccc-cCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            4567889999999999999999999998766     7899999996 688887754422    46678999999999999


Q ss_pred             cCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc-CCCcchhhHHHHHHHH
Q 044022           83 FGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-VLNEKSNVFSFGAFLF  161 (241)
Q Consensus        83 ~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~~~  161 (241)
                         +.+++||||||+|||++.++.++|+|||++......... ......++..|+|||.+.+. .++.++||||+||++|
T Consensus       121 ---~~~ivH~dlkp~Nili~~~~~~kL~Dfg~a~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~  196 (372)
T cd07853         121 ---SAGILHRDIKPGNLLVNSNCVLKICDFGLARVEEPDESK-HMTQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFA  196 (372)
T ss_pred             ---hCCeeCCCCChHHEEECCCCCEEeccccceeecccCccc-cCCCCCcCCCcCCHHHHcCCCCCCcHHHHHhHHHHHH
Confidence               899999999999999999999999999998765432211 11234578899999998764 4789999999999999


Q ss_pred             HHHhcCccccc
Q 044022          162 ELLAGRIHIWD  172 (241)
Q Consensus       162 ~~~~g~~p~~~  172 (241)
                      +|++|+.||..
T Consensus       197 el~~g~~pf~~  207 (372)
T cd07853         197 ELLGRRILFQA  207 (372)
T ss_pred             HHHcCCCCCCC
Confidence            99999999954

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=2.3e-35  Score=236.66  Aligned_cols=224  Identities=23%  Similarity=0.335  Sum_probs=162.9

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeeee--CCcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHH
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQ--TPIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDI   74 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~--~~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i   74 (241)
                      |.+...........|.+|+++++.++|+||+++++++..  ....++++||+++++|.+++....     .....++.++
T Consensus        39 K~~~~~~~~~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l  118 (284)
T cd05038          39 KSLNHSGEEQHRSDFEREIEILRTLDHENIVKYKGVCEKPGGRSLRLIMEYLPSGSLRDYLQRHRDQINLKRLLLFSSQI  118 (284)
T ss_pred             EEeccccchHHHHHHHHHHHHHHhCCCCChheEEeeeecCCCCceEEEEecCCCCCHHHHHHhCccccCHHHHHHHHHHH
Confidence            444333322346789999999999999999999999877  557899999999999999987654     1467889999


Q ss_pred             HHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcce-eecccccCCCccCcccccccCCCcchhh
Q 044022           75 VNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHI-TTDRVIGTRGYSAPEYISICVLNEKSNV  153 (241)
Q Consensus        75 ~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~-~~~~~~~~~~~~aPE~~~~~~~~~~~Di  153 (241)
                      +.||.|||   +.+++|+||+|+||+++.++.++|+|||.+.......... ......++..|+|||...+..++.++|+
T Consensus       119 ~~aL~~lH---~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di  195 (284)
T cd05038         119 CKGMDYLG---SQRYIHRDLAARNILVESEDLVKISDFGLAKVLPEDKDYYYVKEPGESPIFWYAPECLRTSKFSSASDV  195 (284)
T ss_pred             HHHHHHHH---hCCeecCCCCHHhEEEcCCCCEEEcccccccccccCCcceeccCCCCCcccccCcHHHccCCCCcccch
Confidence            99999999   8999999999999999999999999999988765332211 1112234566999999988889999999


Q ss_pred             HHHHHHHHHHHhcCcccccccccCCC-----cccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHh
Q 044022          154 FSFGAFLFELLAGRIHIWDLLKDTHD-----HGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLEC  228 (241)
Q Consensus       154 ~s~G~~~~~~~~g~~p~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c  228 (241)
                      ||||+++|+|++|..|+.........     .................  ....+           ..++..+.+++.+|
T Consensus       196 ~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-----------~~~~~~~~~li~~c  262 (284)
T cd05038         196 WSFGVTLYELFTYGDPSQSPPAEFLRMIGIAQGQMIVTRLLELLKEGE--RLPRP-----------PSCPDEVYDLMKLC  262 (284)
T ss_pred             HHHhhhhheeeccCCCcccccchhccccccccccccHHHHHHHHHcCC--cCCCC-----------ccCCHHHHHHHHHH
Confidence            99999999999999998552211100     00000111111111110  00000           12235789999999


Q ss_pred             ccCCCCCCCCCCC
Q 044022          229 VNNSPEDRPTMVD  241 (241)
Q Consensus       229 l~~~p~~Rpt~~e  241 (241)
                      |..+|++|||+.|
T Consensus       263 l~~~p~~Rpt~~e  275 (284)
T cd05038         263 WEAEPQDRPSFAD  275 (284)
T ss_pred             hccChhhCCCHHH
Confidence            9999999999864

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=100.00  E-value=4.7e-35  Score=238.66  Aligned_cols=157  Identities=20%  Similarity=0.202  Sum_probs=127.1

Q ss_pred             HHHHHHHHHHHHhcCCCcccceeeeeee--CCcceEEEEecCCCCHHHhhcCCC-------------chHHHHHHHHHHH
Q 044022           13 YGSCINNITYAAQMSHNHILKRIGCCLQ--TPIPILVFQSVEYGTLRDCIFGAP-------------LPRLKIASDIVNS   77 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~--~~~~~lv~e~~~~~sL~~~l~~~~-------------~~~~~~~~~i~~~   77 (241)
                      ...+.+|++++++++||||+++++++..  ....++|+||+. ++|.+++....             .....++.|++.|
T Consensus        42 ~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~a  120 (317)
T cd07867          42 SMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFDYAE-HDLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDG  120 (317)
T ss_pred             cHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEEeeeC-CcHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHH
Confidence            3467899999999999999999999864  457799999996 58877764210             1256789999999


Q ss_pred             hchhhcCCCCCceeccCCCCCeee----cCCCCeEEeeccCceecCCCCcc-eeecccccCCCccCccccccc-CCCcch
Q 044022           78 LAYLHFGFPRPIVLRNFKTQNILF----NEENVAKWFDFLLSISIPEGETH-ITTDRVIGTRGYSAPEYISIC-VLNEKS  151 (241)
Q Consensus        78 l~~lh~~~~~~ivh~dl~~~nil~----~~~~~~~l~df~~~~~~~~~~~~-~~~~~~~~~~~~~aPE~~~~~-~~~~~~  151 (241)
                      |.|||   +.+++||||||+||++    +.++.++|+|||++......... .......++..|+|||++.+. .++.++
T Consensus       121 L~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~  197 (317)
T cd07867         121 IHYLH---ANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAI  197 (317)
T ss_pred             HHHHH---hCCEEcCCCCHHHEEEccCCCCCCcEEEeeccceeccCCCcccccccCcceecccccCcHHhcCCCccCcHH
Confidence            99999   8999999999999999    56679999999999765433211 112234678899999998764 578999


Q ss_pred             hhHHHHHHHHHHHhcCcccccc
Q 044022          152 NVFSFGAFLFELLAGRIHIWDL  173 (241)
Q Consensus       152 Di~s~G~~~~~~~~g~~p~~~~  173 (241)
                      ||||||+++|+|++|++||...
T Consensus       198 DiwSlG~il~el~tg~~~f~~~  219 (317)
T cd07867         198 DIWAIGCIFAELLTSEPIFHCR  219 (317)
T ss_pred             HHHhHHHHHHHHHhCCCCcccc
Confidence            9999999999999999999653

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=100.00  E-value=3.3e-35  Score=233.64  Aligned_cols=219  Identities=21%  Similarity=0.290  Sum_probs=165.6

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-------chHHHHHHHH
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-------LPRLKIASDI   74 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-------~~~~~~~~~i   74 (241)
                      |++..+......+.+.+|+++++.++|+|++++++.+...+..++|+|++++++|.+++....       .....++.++
T Consensus        32 k~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql  111 (267)
T cd06610          32 KRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSFVVGDELWLVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEV  111 (267)
T ss_pred             EEeccCCcchHHHHHHHHHHHHHhcCCCCEEEEEEEEeeCCEEEEEEeccCCCcHHHHHHHhcccCCCCHHHHHHHHHHH
Confidence            444433333356789999999999999999999999999999999999999999999986531       1456789999


Q ss_pred             HHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcce--eecccccCCCccCccccccc-CCCcch
Q 044022           75 VNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHI--TTDRVIGTRGYSAPEYISIC-VLNEKS  151 (241)
Q Consensus        75 ~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~--~~~~~~~~~~~~aPE~~~~~-~~~~~~  151 (241)
                      +.|+++||   +.+++|+||+|+||+++.++.++|+|||.+..........  ......++..|+|||++... .++.++
T Consensus       112 ~~al~~lh---~~~i~h~~l~p~ni~~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~  188 (267)
T cd06610         112 LKGLEYLH---SNGQIHRDIKAGNILLGEDGSVKIADFGVSASLADGGDRTRKVRKTFVGTPCWMAPEVMEQVHGYDFKA  188 (267)
T ss_pred             HHHHHHHH---hCCeecCCCCHHhEEEcCCCCEEEcccchHHHhccCccccccccccccCChhhcChHHHccccCcCccc
Confidence            99999999   9999999999999999999999999999987665443221  22334578899999998876 788999


Q ss_pred             hhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccC
Q 044022          152 NVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNN  231 (241)
Q Consensus       152 Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~  231 (241)
                      |+||||+++|+|++|+.||......         +.........      .+.......   ....++.+.+++.+||..
T Consensus       189 Dv~slG~i~~~l~~g~~p~~~~~~~---------~~~~~~~~~~------~~~~~~~~~---~~~~~~~~~~li~~~l~~  250 (267)
T cd06610         189 DIWSFGITAIELATGAAPYSKYPPM---------KVLMLTLQND------PPSLETGAD---YKKYSKSFRKMISLCLQK  250 (267)
T ss_pred             chHhHhHHHHHHHhCCCCccccChh---------hhHHHHhcCC------CCCcCCccc---cccccHHHHHHHHHHcCC
Confidence            9999999999999999999652111         0111111110      011111000   013346789999999999


Q ss_pred             CCCCCCCCCC
Q 044022          232 SPEDRPTMVD  241 (241)
Q Consensus       232 ~p~~Rpt~~e  241 (241)
                      ||++|||++|
T Consensus       251 ~p~~Rp~~~~  260 (267)
T cd06610         251 DPSKRPTAEE  260 (267)
T ss_pred             ChhhCcCHHH
Confidence            9999999864

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=3.7e-35  Score=236.25  Aligned_cols=221  Identities=22%  Similarity=0.230  Sum_probs=161.0

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeC--CcceEEEEecCCCCHHHhhcCC-----C---chHHHHH
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQT--PIPILVFQSVEYGTLRDCIFGA-----P---LPRLKIA   71 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~--~~~~lv~e~~~~~sL~~~l~~~-----~---~~~~~~~   71 (241)
                      |.+..........++.+|++++++++||||+++++++...  +..++||||+++++|.+++...     .   .....++
T Consensus        32 k~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~  111 (287)
T cd06621          32 KTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIGIAMEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIA  111 (287)
T ss_pred             EEEecCCchHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEEEEEecCCCCHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            4444333334567799999999999999999999988653  4689999999999998876421     1   1356799


Q ss_pred             HHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcch
Q 044022           72 SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKS  151 (241)
Q Consensus        72 ~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~  151 (241)
                      .+++.||+|||   +.+++|+||+|+||+++.++.++|+|||++........    ....++..|+|||.+.+..++.++
T Consensus       112 ~~i~~~L~~lH---~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~----~~~~~~~~y~~pE~~~~~~~~~~~  184 (287)
T cd06621         112 ESVLKGLSYLH---SRKIIHRDIKPSNILLTRKGQVKLCDFGVSGELVNSLA----GTFTGTSFYMAPERIQGKPYSITS  184 (287)
T ss_pred             HHHHHHHHHHH---HCCcccCCCCHHHEEEecCCeEEEeecccccccccccc----ccccCCccccCHHHhcCCCCCchh
Confidence            99999999999   89999999999999999999999999999865433221    123467789999999888899999


Q ss_pred             hhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccC
Q 044022          152 NVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNN  231 (241)
Q Consensus       152 Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~  231 (241)
                      |+||||+++|+|++|..||.......    ....+.. .............. ....      ...++.+.+++.+||+.
T Consensus       185 Dv~slG~il~~l~~g~~p~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~-~~~~------~~~~~~~~~li~~~l~~  252 (287)
T cd06621         185 DVWSLGLTLLEVAQNRFPFPPEGEPP----LGPIELL-SYIVNMPNPELKDE-PGNG------IKWSEEFKDFIKQCLEK  252 (287)
T ss_pred             hHHHHHHHHHHHHhCCCCCCcccCCC----CChHHHH-HHHhcCCchhhccC-CCCC------CchHHHHHHHHHHHcCC
Confidence            99999999999999999996531110    0111111 11111111111110 0000      12346789999999999


Q ss_pred             CCCCCCCCCC
Q 044022          232 SPEDRPTMVD  241 (241)
Q Consensus       232 ~p~~Rpt~~e  241 (241)
                      +|++|||+.|
T Consensus       253 ~p~~Rpt~~e  262 (287)
T cd06621         253 DPTRRPTPWD  262 (287)
T ss_pred             CcccCCCHHH
Confidence            9999999854

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=100.00  E-value=5.3e-35  Score=231.22  Aligned_cols=213  Identities=24%  Similarity=0.339  Sum_probs=164.4

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC---c---hHHHHHHHHH
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP---L---PRLKIASDIV   75 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~---~---~~~~~~~~i~   75 (241)
                      |.............+.+|+.+++.++|+||+++++++...+..+++|||+++++|.+++....   .   ....++.+++
T Consensus        34 K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~i~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ql~  113 (258)
T smart00219       34 KTLKEDADEQQIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLMIVMEYMEGGDLLDYLRKNRPKELSLSDLLSFALQIA  113 (258)
T ss_pred             EEccCCCChHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCeeEEEEeccCCCCHHHHHHhhhhccCCHHHHHHHHHHHH
Confidence            444433333357789999999999999999999999999899999999999999999986532   2   4678899999


Q ss_pred             HHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHH
Q 044022           76 NSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFS  155 (241)
Q Consensus        76 ~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s  155 (241)
                      .|+++||   +.+++|+||+|+||+++.++.++++|||.+............ ...++..|+|||.+.+..++.++|+||
T Consensus       114 ~~l~~lh---~~~~~h~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~-~~~~~~~y~~Pe~~~~~~~~~~~Di~s  189 (258)
T smart00219      114 RGMEYLE---SKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYKKK-GGKLPIRWMAPESLKDGKFTSKSDVWS  189 (258)
T ss_pred             HHHHHHh---cCCeeecccccceEEEccCCeEEEcccCCceecccccccccc-cCCCcccccChHHhccCCCCcchhHHH
Confidence            9999999   999999999999999999999999999998766554222211 223678899999998888999999999


Q ss_pred             HHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCC
Q 044022          156 FGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPE  234 (241)
Q Consensus       156 ~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~  234 (241)
                      +|+++++|++ |..||...         ......... .........     .        ..+..+.+++.+||..||+
T Consensus       190 lG~i~~~l~~~g~~p~~~~---------~~~~~~~~~-~~~~~~~~~-----~--------~~~~~~~~~i~~~l~~~p~  246 (258)
T smart00219      190 FGVLLWEIFTLGESPYPGM---------SNEEVLEYL-KKGYRLPKP-----E--------NCPPEIYKLMLQCWAEDPE  246 (258)
T ss_pred             HHHHHHHHHhCCCCCCCCC---------CHHHHHHHH-hcCCCCCCC-----C--------cCCHHHHHHHHHHCcCChh
Confidence            9999999998 78887541         111111111 111111111     1        1335788999999999999


Q ss_pred             CCCCCCC
Q 044022          235 DRPTMVD  241 (241)
Q Consensus       235 ~Rpt~~e  241 (241)
                      +|||+.|
T Consensus       247 ~Rpt~~~  253 (258)
T smart00219      247 DRPTFSE  253 (258)
T ss_pred             hCcCHHH
Confidence            9999864

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=100.00  E-value=4.2e-35  Score=232.72  Aligned_cols=202  Identities=22%  Similarity=0.272  Sum_probs=159.9

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ...+.+.+|++++++++||||+++++.+..+...++++||+++++|.+++.....    ....++.+++.||.|||   +
T Consensus        35 ~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~~i~~~l~~lH---~  111 (262)
T cd05572          35 GQQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLMEYCLGGELWTILRDRGLFDEYTARFYIACVVLAFEYLH---N  111 (262)
T ss_pred             hHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCccEEEEecCCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHh---h
Confidence            4457799999999999999999999999999999999999999999999876432    45678899999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhc
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      .+++|+||+|+||+++.++.++|+|||.+.......   ......++..|+|||.+....++.++|+||||+++|++++|
T Consensus       112 ~~~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~~~---~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~il~~l~~g  188 (262)
T cd05572         112 RGIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQ---KTWTFCGTPEYVAPEIILNKGYDFSVDYWSLGILLYELLTG  188 (262)
T ss_pred             CCcccCCCCHHHEEEcCCCCEEEeeCCcccccCccc---ccccccCCcCccChhHhcCCCCCChhhhhhhHHHHHHHHhC
Confidence            999999999999999999999999999987665432   11234578889999999888889999999999999999999


Q ss_pred             CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCC
Q 044022          167 RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT  238 (241)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt  238 (241)
                      ..||......       ..+..............+     .        ..+..+.+++.+||..+|++|||
T Consensus       189 ~~p~~~~~~~-------~~~~~~~~~~~~~~~~~~-----~--------~~~~~~~~~i~~~l~~~p~~R~~  240 (262)
T cd05572         189 RPPFGEDDED-------PMEIYNDILKGNGKLEFP-----N--------YIDKAAKDLIKQLLRRNPEERLG  240 (262)
T ss_pred             CCCcCCCCCC-------HHHHHHHHhccCCCCCCC-----c--------ccCHHHHHHHHHHccCChhhCcC
Confidence            9999653210       111111111101000000     0        11357899999999999999999

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=100.00  E-value=3.9e-35  Score=237.28  Aligned_cols=205  Identities=17%  Similarity=0.281  Sum_probs=160.3

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc---hHHHHHHHHHHHhchhhcCCCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL---PRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ...+.+.+|+.+++.++|||++++++++..++..++|+||+++++|..++.....   ....++.+++.||.|||   +.
T Consensus        60 ~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~L~~LH---~~  136 (297)
T cd06659          60 QRRELLFNEVVIMRDYQHQNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQTRLNEEQIATVCESVLQALCYLH---SQ  136 (297)
T ss_pred             chHHHHHHHHHHHHhCCCCchhhhhhheeeCCeEEEEEecCCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH---hC
Confidence            3456788999999999999999999999999999999999999999998765432   46788999999999999   89


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcC
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR  167 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~  167 (241)
                      +++|+||+|+||+++.++.++|+|||.+........  ......++..|+|||++.+..++.++|+||||+++|+|++|+
T Consensus       137 ~ivH~dl~p~Nill~~~~~~kL~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~  214 (297)
T cd06659         137 GVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVP--KRKSLVGTPYWMAPEVISRTPYGTEVDIWSLGIMVIEMVDGE  214 (297)
T ss_pred             CeecCCCCHHHeEEccCCcEEEeechhHhhcccccc--cccceecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCC
Confidence            999999999999999999999999998865433221  112346788999999998888999999999999999999999


Q ss_pred             cccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          168 IHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       168 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      .||....         ..+..........    .......        ..+..+.+++.+||..+|++|||++|
T Consensus       215 ~p~~~~~---------~~~~~~~~~~~~~----~~~~~~~--------~~~~~l~~~i~~~l~~~P~~Rps~~~  267 (297)
T cd06659         215 PPYFSDS---------PVQAMKRLRDSPP----PKLKNAH--------KISPVLRDFLERMLTREPQERATAQE  267 (297)
T ss_pred             CCCCCCC---------HHHHHHHHhccCC----CCccccC--------CCCHHHHHHHHHHhcCCcccCcCHHH
Confidence            9985411         1111111111100    0000001        12256889999999999999999854

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=100.00  E-value=4.2e-35  Score=233.57  Aligned_cols=204  Identities=23%  Similarity=0.311  Sum_probs=155.8

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC--C-----chHHHHHHHHHHHhchhhcC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA--P-----LPRLKIASDIVNSLAYLHFG   84 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~--~-----~~~~~~~~~i~~~l~~lh~~   84 (241)
                      ..+.+.+|++++++++|+||+++++++..++..++|+||+++++|.+++...  .     .....++.+++.|++|||  
T Consensus        48 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~al~~lH--  125 (268)
T cd06624          48 YVQPLHEEIALHSYLKHRNIVQYLGSDSENGFFKIFMEQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLH--  125 (268)
T ss_pred             HHHHHHHHHHHHHhcCCCCeeeeeeeeccCCEEEEEEecCCCCCHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHH--
Confidence            4567899999999999999999999999999999999999999999988653  1     135678899999999999  


Q ss_pred             CCCCceeccCCCCCeeecC-CCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc--CCCcchhhHHHHHHHH
Q 044022           85 FPRPIVLRNFKTQNILFNE-ENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC--VLNEKSNVFSFGAFLF  161 (241)
Q Consensus        85 ~~~~ivh~dl~~~nil~~~-~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~--~~~~~~Di~s~G~~~~  161 (241)
                       +.+++|+||||+||+++. .+.++|+|||.+........  ......++..|+|||++...  .++.++|+||||+++|
T Consensus       126 -~~~i~h~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~  202 (268)
T cd06624         126 -DNQIVHRDIKGDNVLVNTYSGVVKISDFGTSKRLAGINP--CTETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIV  202 (268)
T ss_pred             -HCCEeecCCCHHHEEEcCCCCeEEEecchhheecccCCC--ccccCCCCccccChhhhccccccCCchhhhHHHHHHHH
Confidence             899999999999999976 67999999999875533221  11223578899999998654  3788999999999999


Q ss_pred             HHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          162 ELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       162 ~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ++++|..||.......        ...........     .+.+..        ...+.+.+++.+||+.+|++|||+.|
T Consensus       203 ~l~~g~~p~~~~~~~~--------~~~~~~~~~~~-----~~~~~~--------~~~~~~~~li~~~l~~~p~~Rpt~~~  261 (268)
T cd06624         203 EMATGKPPFIELGEPQ--------AAMFKVGMFKI-----HPEIPE--------SLSAEAKNFILRCFEPDPDKRASAHD  261 (268)
T ss_pred             HHHhCCCCCccccChh--------hhHhhhhhhcc-----CCCCCc--------ccCHHHHHHHHHHcCCCchhCCCHHH
Confidence            9999999985421110        00000000000     011111        23356889999999999999999864

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=100.00  E-value=7.7e-35  Score=236.35  Aligned_cols=205  Identities=20%  Similarity=0.176  Sum_probs=156.5

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ..+.+.+|+++++.++||||+++++.+..++..++||||+++++|.+++.....    ....++.+++.|+.|||   +.
T Consensus        44 ~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH---~~  120 (305)
T cd05609          44 QIQQVFVERDILTFAENPFVVSMFCSFETKRHLCMVMEYVEGGDCATLLKNIGALPVDMARMYFAETVLALEYLH---NY  120 (305)
T ss_pred             HHHHHHHHHHHHHhCCCCCeeeeEEEEecCCEEEEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HC
Confidence            355788999999999999999999999999999999999999999999865432    35677889999999999   89


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCC-------------cceeecccccCCCccCcccccccCCCcchhhH
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGE-------------THITTDRVIGTRGYSAPEYISICVLNEKSNVF  154 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~-------------~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~  154 (241)
                      +++|+||+|+||+++.++.++++|||.++......             .........++..|+|||.+....++.++|+|
T Consensus       121 ~i~H~dl~p~NIll~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~  200 (305)
T cd05609         121 GIVHRDLKPDNLLITSMGHIKLTDFGLSKIGLMSLTTNLYEGHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPVDWW  200 (305)
T ss_pred             CccccCCchHHEEECCCCCEEEeeCCCccccCcCccccccccccccchhhccccCCccCccccCchhccCCCCCchhhHH
Confidence            99999999999999999999999999876321100             00011123567789999999888899999999


Q ss_pred             HHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCC
Q 044022          155 SFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPE  234 (241)
Q Consensus       155 s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~  234 (241)
                      |||+++|++++|..||....         ..+.........    ...+....        ..+..+.+++.+||+.||+
T Consensus       201 slG~vl~el~~g~~pf~~~~---------~~~~~~~~~~~~----~~~~~~~~--------~~~~~~~~li~~~l~~~P~  259 (305)
T cd05609         201 AMGIILYEFLVGCVPFFGDT---------PEELFGQVISDD----IEWPEGDE--------ALPADAQDLISRLLRQNPL  259 (305)
T ss_pred             HHHHHHHHHHhCCCCCCCCC---------HHHHHHHHHhcc----cCCCCccc--------cCCHHHHHHHHHHhccChh
Confidence            99999999999999995421         111111111111    01111101        1235688999999999999


Q ss_pred             CCCCCC
Q 044022          235 DRPTMV  240 (241)
Q Consensus       235 ~Rpt~~  240 (241)
                      +|||+.
T Consensus       260 ~R~~~~  265 (305)
T cd05609         260 ERLGTG  265 (305)
T ss_pred             hccCcc
Confidence            999953

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=100.00  E-value=4.9e-35  Score=229.71  Aligned_cols=154  Identities=22%  Similarity=0.299  Sum_probs=133.4

Q ss_pred             HHHHHHHHHHHHhcCCCc-ccceeeeeeeCC------cceEEEEecCCCCHHHhhcCCCc--------hHHHHHHHHHHH
Q 044022           13 YGSCINNITYAAQMSHNH-ILKRIGCCLQTP------IPILVFQSVEYGTLRDCIFGAPL--------PRLKIASDIVNS   77 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~-iv~~~~~~~~~~------~~~lv~e~~~~~sL~~~l~~~~~--------~~~~~~~~i~~~   77 (241)
                      .....+|+.+++.|+|+| ||.+++++....      .+++|+||+. -+|..++.....        .+..++.||+.|
T Consensus        54 P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~~~~l~lvfe~~d-~DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~g  132 (323)
T KOG0594|consen   54 PSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRGIGKLYLVFEFLD-RDLKKYMDSLPKKPQGLPPRLIKSFMRQLLRG  132 (323)
T ss_pred             CchhhHHHHHHHHhCCCcceEEEEeeeeecccccccceEEEEEEeec-ccHHHHHHhccccccCCCHHHHHHHHHHHHHH
Confidence            344679999999999999 999999998876      7899999996 699999876541        367899999999


Q ss_pred             hchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc-CCCcchhhHHH
Q 044022           78 LAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-VLNEKSNVFSF  156 (241)
Q Consensus        78 l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~  156 (241)
                      |+|||   +++|+||||||+|||++.+|.+||+|||+++....+...  .+..+.|.-|+|||++.+. .|++..||||+
T Consensus       133 l~~~H---~~~IlHRDLKPQNlLi~~~G~lKlaDFGlAra~~ip~~~--yt~evvTlWYRaPEvLlGs~~Ys~~vDiWs~  207 (323)
T KOG0594|consen  133 LAFLH---SHGILHRDLKPQNLLISSSGVLKLADFGLARAFSIPMRT--YTPEVVTLWYRAPEVLLGSTSYSTSVDIWSL  207 (323)
T ss_pred             HHHHH---hCCeecccCCcceEEECCCCcEeeeccchHHHhcCCccc--ccccEEEeeccCHHHhcCCCcCCCCcchHhH
Confidence            99999   999999999999999999999999999999866544322  2345678889999999887 78999999999


Q ss_pred             HHHHHHHHhcCccccc
Q 044022          157 GAFLFELLAGRIHIWD  172 (241)
Q Consensus       157 G~~~~~~~~g~~p~~~  172 (241)
                      |||+.||+++++-|..
T Consensus       208 GcIfaEm~~~~~LFpG  223 (323)
T KOG0594|consen  208 GCIFAEMFTRRPLFPG  223 (323)
T ss_pred             HHHHHHHHhCCCCCCC
Confidence            9999999999988854

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=100.00  E-value=1.5e-34  Score=229.46  Aligned_cols=202  Identities=23%  Similarity=0.317  Sum_probs=156.1

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC------chHHHHHHHHHHHhchhhcCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP------LPRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~------~~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ...++.+|+.++++++|+|++++++++. .+..++++||+++++|.+++....      .....++.+++.||+|||   
T Consensus        44 ~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH---  119 (260)
T cd05067          44 SPEAFLAEANLMKQLQHPRLVRLYAVVT-QEPIYIITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIE---  119 (260)
T ss_pred             cHHHHHHHHHHHHhcCCcCeeeEEEEEc-cCCcEEEEEcCCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHh---
Confidence            4567999999999999999999999874 456899999999999999886432      145778999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~  165 (241)
                      +.+++|+||+|+||+++.++.++++|||.+.......... .....++..|+|||++....++.++||||||+++|++++
T Consensus       120 ~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~-~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~el~~  198 (260)
T cd05067         120 RKNYIHRDLRAANILVSETLCCKIADFGLARLIEDNEYTA-REGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT  198 (260)
T ss_pred             cCCeecccccHHhEEEcCCCCEEEccCcceeecCCCCccc-ccCCcccccccCHHHhccCCcCcccchHHHHHHHHHHHh
Confidence            8999999999999999999999999999987655322111 122345678999999988889999999999999999999


Q ss_pred             -cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          166 -GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       166 -g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                       |+.||....         ..+..... .........     .        ..+..+.+++.+||..+|++|||+++
T Consensus       199 ~g~~p~~~~~---------~~~~~~~~-~~~~~~~~~-----~--------~~~~~~~~li~~~l~~~p~~Rp~~~~  252 (260)
T cd05067         199 YGRIPYPGMT---------NPEVIQNL-ERGYRMPRP-----D--------NCPEELYELMRLCWKEKPEERPTFEY  252 (260)
T ss_pred             CCCCCCCCCC---------hHHHHHHH-HcCCCCCCC-----C--------CCCHHHHHHHHHHccCChhhCCCHHH
Confidence             999995421         11111111 111111111     1        12257899999999999999999753

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=100.00  E-value=1.4e-34  Score=228.93  Aligned_cols=203  Identities=23%  Similarity=0.375  Sum_probs=157.8

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC--c---hHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP--L---PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~--~---~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ....|.+|++++++++|||++++++++......++|+||+++++|.+++....  .   ....++.+++.|+++||   +
T Consensus        42 ~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH---~  118 (256)
T cd05112          42 SEEDFIEEAQVMMKLSHPKLVQLYGVCTERSPICLVFEFMEHGCLSDYLRAQRGKFSQETLLGMCLDVCEGMAYLE---S  118 (256)
T ss_pred             CHHHHHHHHHHHHhCCCCCeeeEEEEEccCCceEEEEEcCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            35679999999999999999999999999899999999999999999986532  1   35778899999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh-
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA-  165 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~-  165 (241)
                      .+++|+||+|+||+++.++.++|+|||.+......... ......++..|+|||++.+..++.++|+||||+++|++++ 
T Consensus       119 ~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~-~~~~~~~~~~~~aPe~~~~~~~~~~~Dv~slG~~l~el~~~  197 (256)
T cd05112         119 SNVIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQYT-SSTGTKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSE  197 (256)
T ss_pred             CCccccccccceEEEcCCCeEEECCCcceeecccCccc-ccCCCccchhhcCHhHhccCCcChHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999998765432211 1112234567999999988889999999999999999998 


Q ss_pred             cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          166 GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       166 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      |..||....         ..+..........   ...+.           ..+..+.+++.+||..+|++|||++|
T Consensus       198 g~~p~~~~~---------~~~~~~~~~~~~~---~~~~~-----------~~~~~~~~l~~~~l~~~p~~Rp~~~~  250 (256)
T cd05112         198 GKTPYENRS---------NSEVVETINAGFR---LYKPR-----------LASQSVYELMQHCWKERPEDRPSFSL  250 (256)
T ss_pred             CCCCCCcCC---------HHHHHHHHhCCCC---CCCCC-----------CCCHHHHHHHHHHcccChhhCCCHHH
Confidence            999985411         1112222111110   01111           12257899999999999999999864

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=100.00  E-value=2.2e-35  Score=238.15  Aligned_cols=204  Identities=17%  Similarity=0.266  Sum_probs=159.4

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc---hHHHHHHHHHHHhchhhcCCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL---PRLKIASDIVNSLAYLHFGFPRP   88 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~i~~~l~~lh~~~~~~   88 (241)
                      ..+.+.+|+.++++++|+|++++++.+...+..++|+||+++++|.+++.....   ....++.+|+.|+.|||   +.+
T Consensus        62 ~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~l~~~~~~~~~~qi~~~l~~LH---~~~  138 (292)
T cd06658          62 RRELLFNEVVIMRDYHHENVVDMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIATVCLSVLRALSYLH---NQG  138 (292)
T ss_pred             HHHHHHHHHHHHHhCCCCcHHHHHHheecCCeEEEEEeCCCCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCC
Confidence            456788999999999999999999999999999999999999999998855432   56788999999999999   899


Q ss_pred             ceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcCc
Q 044022           89 IVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRI  168 (241)
Q Consensus        89 ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~~  168 (241)
                      ++|+||+|+||+++.++.++|+|||++........  ......++..|+|||.+.+..++.++|+||||+++|++++|..
T Consensus       139 ivH~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~el~~g~~  216 (292)
T cd06658         139 VIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVP--KRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEP  216 (292)
T ss_pred             EeecCCCHHHEEEcCCCCEEEccCcchhhcccccc--cCceeecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999998865433221  1123457889999999988889999999999999999999999


Q ss_pred             ccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          169 HIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       169 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ||.....         ........ ..........           ...+..+.+++.+||..||++|||++|
T Consensus       217 p~~~~~~---------~~~~~~~~-~~~~~~~~~~-----------~~~~~~~~~li~~~l~~~P~~Rpt~~~  268 (292)
T cd06658         217 PYFNEPP---------LQAMRRIR-DNLPPRVKDS-----------HKVSSVLRGFLDLMLVREPSQRATAQE  268 (292)
T ss_pred             CCCCCCH---------HHHHHHHH-hcCCCccccc-----------cccCHHHHHHHHHHccCChhHCcCHHH
Confidence            9854111         11111111 1000000000           022356889999999999999999864

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=100.00  E-value=8.7e-35  Score=232.90  Aligned_cols=203  Identities=22%  Similarity=0.325  Sum_probs=160.6

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc---hHHHHHHHHHHHhchhhcCCCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL---PRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ...+.+.+|++++++++||||+++++++..++..++|+||+++++|..++.....   ....++.+++.|+.+||   +.
T Consensus        44 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~l~~lh---~~  120 (277)
T cd06641          44 DEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGPLDETQIATILREILKGLDYLH---SE  120 (277)
T ss_pred             HHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCCeEEEEEEeCCCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHc---cC
Confidence            3456788999999999999999999999999999999999999999999876533   45778999999999999   99


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcC
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR  167 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~  167 (241)
                      +++|+||+|+||+++.++.++++|||.+........  ......++..|+|||.+.+..++.++|+||||+++|++++|.
T Consensus       121 ~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~  198 (277)
T cd06641         121 KKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQI--KRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELAKGE  198 (277)
T ss_pred             CeecCCCCHHhEEECCCCCEEEeecccceecccchh--hhccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999876543221  112345778899999998888899999999999999999999


Q ss_pred             cccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          168 IHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       168 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      .||.....         ...... .....     .+.+..        ..+..+.+++.+||..+|.+||++.|
T Consensus       199 ~p~~~~~~---------~~~~~~-~~~~~-----~~~~~~--------~~~~~~~~~i~~~l~~~p~~Rp~~~~  249 (277)
T cd06641         199 PPHSELHP---------MKVLFL-IPKNN-----PPTLEG--------NYSKPLKEFVEACLNKEPSFRPTAKE  249 (277)
T ss_pred             CCCCccch---------HHHHHH-HhcCC-----CCCCCc--------ccCHHHHHHHHHHccCChhhCcCHHH
Confidence            99854111         011111 11110     111111        22357889999999999999999753

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.2e-35  Score=243.61  Aligned_cols=199  Identities=20%  Similarity=0.190  Sum_probs=152.4

Q ss_pred             HHHHHHHHHHHHhc---CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCC
Q 044022           13 YGSCINNITYAAQM---SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        13 ~~~~~~e~~~l~~l---~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ...+.+|..++..+   +||||+++++++......++||||+++|+|..++.....    ....++.||+.||.|||   
T Consensus        37 ~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~qil~al~~LH---  113 (330)
T cd05586          37 VAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVTDYMSGGELFWHLQKEGRFSEDRAKFYIAELVLALEHLH---  113 (330)
T ss_pred             HHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEEcCCCCChHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            34456677777765   699999999999999999999999999999988865432    45678999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc-CCCcchhhHHHHHHHHHHH
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-VLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~~~~~~  164 (241)
                      +++++||||||+|||++.++.++|+|||++........  ......|+..|+|||++.+. .++.++||||||+++|+|+
T Consensus       114 ~~~ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~DvwslGvil~ell  191 (330)
T cd05586         114 KYDIVYRDLKPENILLDATGHIALCDFGLSKANLTDNK--TTNTFCGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMC  191 (330)
T ss_pred             HCCeEeccCCHHHeEECCCCCEEEecCCcCcCCCCCCC--CccCccCCccccCHHHHcCCCCCCCccceeccccEEEEec
Confidence            99999999999999999999999999999865322211  11335689999999998754 4789999999999999999


Q ss_pred             hcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCC
Q 044022          165 AGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM  239 (241)
Q Consensus       165 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~  239 (241)
                      +|..||....         ..+...... .+.. ..+..            ..+..+.+++.+||..||++||++
T Consensus       192 tG~~Pf~~~~---------~~~~~~~i~-~~~~-~~~~~------------~~~~~~~~li~~~L~~~P~~R~~~  243 (330)
T cd05586         192 CGWSPFYAED---------TQQMYRNIA-FGKV-RFPKN------------VLSDEGRQFVKGLLNRNPQHRLGA  243 (330)
T ss_pred             cCCCCCCCCC---------HHHHHHHHH-cCCC-CCCCc------------cCCHHHHHHHHHHcCCCHHHCCCC
Confidence            9999995421         111111111 1110 11110            122567899999999999999965

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=100.00  E-value=9e-35  Score=230.71  Aligned_cols=201  Identities=22%  Similarity=0.344  Sum_probs=156.2

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC------chHHHHHHHHHHHhchhhcCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP------LPRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~------~~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ..+.+.+|++++++++|+||+++++.+.. ...++++||+++++|.+++....      ..+..++.+++.||.|||   
T Consensus        44 ~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH---  119 (260)
T cd05073          44 SVEAFLAEANVMKTLQHDKLVKLHAVVTK-EPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIE---  119 (260)
T ss_pred             HHHHHHHHHHHHHhcCCCCcceEEEEEcC-CCeEEEEEeCCCCcHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHH---
Confidence            35678999999999999999999999877 77899999999999999986532      145778999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~  165 (241)
                      +.+++|+||+|+||+++.++.++|+|||.+.......... .....++..|+|||++....++.++|+||||+++|++++
T Consensus       120 ~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~-~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~t  198 (260)
T cd05073         120 QRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTA-REGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVT  198 (260)
T ss_pred             hCCccccccCcceEEEcCCCcEEECCCcceeeccCCCccc-ccCCcccccccCHhHhccCCcCccccchHHHHHHHHHHh
Confidence            8999999999999999999999999999987654332211 122235567999999988888999999999999999998


Q ss_pred             -cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          166 -GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       166 -g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                       |..||.....         .... ............     .        ..+..+.+++.+||+.+|++|||++
T Consensus       199 ~g~~p~~~~~~---------~~~~-~~~~~~~~~~~~-----~--------~~~~~~~~~i~~~l~~~p~~Rp~~~  251 (260)
T cd05073         199 YGRIPYPGMSN---------PEVI-RALERGYRMPRP-----E--------NCPEELYNIMMRCWKNRPEERPTFE  251 (260)
T ss_pred             cCCCCCCCCCH---------HHHH-HHHhCCCCCCCc-----c--------cCCHHHHHHHHHHcccCcccCcCHH
Confidence             9999854211         1111 111111110000     1        2235788999999999999999975

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.5e-34  Score=229.41  Aligned_cols=203  Identities=24%  Similarity=0.336  Sum_probs=158.3

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc------hHHHHHHHHHHHhchhhcCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL------PRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~------~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ...++.+|+.++++++|+||+++++++......++|+||+++++|.+++.....      ....++.+++.|+.|||   
T Consensus        44 ~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~i~~al~~lh---  120 (261)
T cd05034          44 SPEAFLQEAQIMKKLRHDKLVQLYAVCSEEEPIYIVTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLE---  120 (261)
T ss_pred             CHHHHHHHHHHHhhCCCCCEeeeeeeeecCCceEEEEeccCCCCHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            456799999999999999999999999988899999999999999999866431      45788999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~  165 (241)
                      +.+++|+||+|+||+++.++.++++|||.+.......... ......+..|+|||.+.+..++.++|+||||+++|++++
T Consensus       121 ~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~-~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~t  199 (261)
T cd05034         121 SRNYIHRDLAARNILVGENLVCKIADFGLARLIEDDEYTA-REGAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVT  199 (261)
T ss_pred             hCCcccCCcchheEEEcCCCCEEECccccceeccchhhhh-hhccCCCccccCHHHhccCCcCchhHHHHHHHHHHHHHh
Confidence            8999999999999999999999999999987654321111 112234567999999998889999999999999999998


Q ss_pred             -cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          166 -GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       166 -g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                       |+.||....         .......... +.....+     .        ..+..+.+++.+||..+|++|||+++
T Consensus       200 ~g~~p~~~~~---------~~~~~~~~~~-~~~~~~~-----~--------~~~~~~~~~i~~~l~~~p~~Rp~~~~  253 (261)
T cd05034         200 YGRVPYPGMT---------NREVLEQVER-GYRMPRP-----P--------NCPEELYDLMLQCWDKDPEERPTFEY  253 (261)
T ss_pred             CCCCCCCCCC---------HHHHHHHHHc-CCCCCCC-----C--------CCCHHHHHHHHHHcccCcccCCCHHH
Confidence             999984421         1111111111 1000000     1        11357899999999999999999853

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=100.00  E-value=9e-35  Score=233.49  Aligned_cols=155  Identities=19%  Similarity=0.263  Sum_probs=130.7

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-------chHHHHHHHHHHHhchhhcC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-------LPRLKIASDIVNSLAYLHFG   84 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-------~~~~~~~~~i~~~l~~lh~~   84 (241)
                      ....+.+|+.++++++||||+++++++..++..++|+||++ ++|.+++....       .....++.|++.||.|||  
T Consensus        42 ~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH--  118 (285)
T cd07861          42 VPSTAIREISLLKELQHPNIVCLQDVLMQESRLYLIFEFLS-MDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCH--  118 (285)
T ss_pred             chHHHHHHHHHHHhcCCCCEeeeEEEEeeCCeEEEEEecCC-CCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHH--
Confidence            34678899999999999999999999999999999999997 68888875421       135678999999999999  


Q ss_pred             CCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc-CCCcchhhHHHHHHHHHH
Q 044022           85 FPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-VLNEKSNVFSFGAFLFEL  163 (241)
Q Consensus        85 ~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~~~~~  163 (241)
                       +.+++|+||+|+||+++.++.++|+|||.+........  ......+++.|+|||.+.+. .++.++|+||||+++|++
T Consensus       119 -~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l  195 (285)
T cd07861         119 -SRRVLHRDLKPQNLLIDNKGVIKLADFGLARAFGIPVR--VYTHEVVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEM  195 (285)
T ss_pred             -hCCeeecCCCHHHEEEcCCCcEEECcccceeecCCCcc--cccCCcccccccChHHhcCCCCcCcHHHHHHHHHHHHHH
Confidence             89999999999999999999999999999875543221  11223567889999988654 468899999999999999


Q ss_pred             HhcCccccc
Q 044022          164 LAGRIHIWD  172 (241)
Q Consensus       164 ~~g~~p~~~  172 (241)
                      ++|+.||..
T Consensus       196 ~tg~~~~~~  204 (285)
T cd07861         196 ATKKPLFHG  204 (285)
T ss_pred             HHCCCCCCC
Confidence            999999954

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=100.00  E-value=9.8e-35  Score=229.85  Aligned_cols=203  Identities=20%  Similarity=0.258  Sum_probs=158.5

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeee-CCcceEEEEecCCCCHHHhhcCCC------chHHHHHHHHHHHhchhhc
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQ-TPIPILVFQSVEYGTLRDCIFGAP------LPRLKIASDIVNSLAYLHF   83 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~lv~e~~~~~sL~~~l~~~~------~~~~~~~~~i~~~l~~lh~   83 (241)
                      ...+.+.+|++++++++|+|++++.+.+.. .+..++++||+++++|.+++....      .....++.+++.|+.+|| 
T Consensus        41 ~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~lH-  119 (257)
T cd08223          41 RERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGLLYIVMGFCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLH-  119 (257)
T ss_pred             HHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCCEEEEEecccCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH-
Confidence            445678899999999999999999998764 446789999999999999886531      146789999999999999 


Q ss_pred             CCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHH
Q 044022           84 GFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL  163 (241)
Q Consensus        84 ~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~  163 (241)
                        +.+++|+||+|+||+++.++.++|+|||.+........  ......+++.|+|||+..+..++.++|+||||++++++
T Consensus       120 --~~~i~H~di~p~nil~~~~~~~~l~df~~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l  195 (257)
T cd08223         120 --EKHILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQCD--MASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEM  195 (257)
T ss_pred             --hCCeeccCCCchhEEEecCCcEEEecccceEEecccCC--ccccccCCcCccChhHhcCCCCCchhhhHHHHHHHHHH
Confidence              99999999999999999999999999999876543221  11234578889999999988899999999999999999


Q ss_pred             HhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          164 LAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       164 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ++|+.||...         .......... .+....     ...        ..+..+.+++.+||+.||++|||+.|
T Consensus       196 ~~g~~~~~~~---------~~~~~~~~~~-~~~~~~-----~~~--------~~~~~~~~li~~~l~~~p~~Rp~~~~  250 (257)
T cd08223         196 ATLKHAFNAK---------DMNSLVYRII-EGKLPP-----MPK--------DYSPELGELIATMLSKRPEKRPSVKS  250 (257)
T ss_pred             HcCCCCCCCC---------CHHHHHHHHH-hcCCCC-----Ccc--------ccCHHHHHHHHHHhccCcccCCCHHH
Confidence            9999998531         1111111111 111111     111        23367899999999999999999753

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=4.3e-35  Score=256.21  Aligned_cols=216  Identities=24%  Similarity=0.340  Sum_probs=171.9

Q ss_pred             CcccccccccccHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC---------------
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP---------------   64 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~---------------   64 (241)
                      ||...........+.+..|+++|+.+ +|+||+.++|+|...+..++|.||++.|+|..+++...               
T Consensus       333 VK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG~~t~~~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~  412 (609)
T KOG0200|consen  333 VKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLGACTQDGPLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNER  412 (609)
T ss_pred             EEecccccCcHHHHHHHHHHHHHHHhcCCcchhhheeeeccCCceEEEEEeccCCcHHHHHHhccccccccccCCCcccc
Confidence            35555555556788899999999999 79999999999999999999999999999999997655               


Q ss_pred             --c---hHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceee-cccccCCCccC
Q 044022           65 --L---PRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITT-DRVIGTRGYSA  138 (241)
Q Consensus        65 --~---~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~-~~~~~~~~~~a  138 (241)
                        .   ..+.++.||+.|++||+   +.++|||||.++|||+..+..+||+|||+++........... +...-+..|||
T Consensus       413 ~~L~~~dLlsfa~QIa~GMe~L~---~~~~vHRDLAaRNVLi~~~~~~kIaDFGlar~~~~~~~y~~~~~~~~LP~kWmA  489 (609)
T KOG0200|consen  413 DALTTKDLLSFAYQIANGMEYLA---SVPCVHRDLAARNVLITKNKVIKIADFGLARDHYNKDYYRTKSSAGTLPVKWMA  489 (609)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHh---hCCccchhhhhhhEEecCCCEEEEccccceeccCCCCceEecCCCCccceeecC
Confidence              2   24688999999999999   999999999999999999999999999999855443332211 11114567999


Q ss_pred             cccccccCCCcchhhHHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHH
Q 044022          139 PEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQ  217 (241)
Q Consensus       139 PE~~~~~~~~~~~Di~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (241)
                      ||.+....++.+|||||||+++||+++ |..||....        ...+. ......+...+.+.             .+
T Consensus       490 pEsl~~~~ft~kSDVWSfGI~L~EifsLG~~PYp~~~--------~~~~l-~~~l~~G~r~~~P~-------------~c  547 (609)
T KOG0200|consen  490 PESLFDRVFTSKSDVWSFGILLWEIFTLGGTPYPGIP--------PTEEL-LEFLKEGNRMEQPE-------------HC  547 (609)
T ss_pred             HHHhccCcccccchhhHHHHHHHHHhhCCCCCCCCCC--------cHHHH-HHHHhcCCCCCCCC-------------CC
Confidence            999999999999999999999999998 778884411        11222 33455554444333             34


Q ss_pred             HHHHHHHHHHhccCCCCCCCCCCC
Q 044022          218 LHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       218 ~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ..++.++|+.||+.+|++||++.|
T Consensus       548 ~~eiY~iM~~CW~~~p~~RP~F~~  571 (609)
T KOG0200|consen  548 SDEIYDLMKSCWNADPEDRPTFSE  571 (609)
T ss_pred             CHHHHHHHHHHhCCCcccCCCHHH
Confidence            477889999999999999999853

>PHA03209 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=2.9e-35  Score=243.78  Aligned_cols=149  Identities=23%  Similarity=0.278  Sum_probs=127.1

Q ss_pred             HHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHHHhchhhcCCCCCc
Q 044022           15 SCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVNSLAYLHFGFPRPI   89 (241)
Q Consensus        15 ~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~~l~~lh~~~~~~i   89 (241)
                      ....|+.++++++|+||+++++++...+..++|+|++. ++|.+++....     ..+..++.|++.||.|||   +++|
T Consensus       103 ~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~i  178 (357)
T PHA03209        103 TTLIEAMLLQNVNHPSVIRMKDTLVSGAITCMVLPHYS-SDLYTYLTKRSRPLPIDQALIIEKQILEGLRYLH---AQRI  178 (357)
T ss_pred             ccHHHHHHHHhCCCCCCcChhheEEeCCeeEEEEEccC-CcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCCe
Confidence            34679999999999999999999999999999999995 68888875432     146789999999999999   8999


Q ss_pred             eeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcCcc
Q 044022           90 VLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIH  169 (241)
Q Consensus        90 vh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~~p  169 (241)
                      +||||||+|||++..+.++|+|||.+........   .....|+..|+|||++.+..++.++||||||+++|+|+++..|
T Consensus       179 vHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvvl~ell~~~~~  255 (357)
T PHA03209        179 IHRDVKTENIFINDVDQVCIGDLGAAQFPVVAPA---FLGLAGTVETNAPEVLARDKYNSKADIWSAGIVLFEMLAYPST  255 (357)
T ss_pred             ecCCCCHHHEEECCCCCEEEecCccccccccCcc---cccccccccccCCeecCCCCCCchhhHHHHHHHHHHHHHcCCc
Confidence            9999999999999999999999999864332211   1234588999999999988999999999999999999986555


Q ss_pred             c
Q 044022          170 I  170 (241)
Q Consensus       170 ~  170 (241)
                      +
T Consensus       256 ~  256 (357)
T PHA03209        256 I  256 (357)
T ss_pred             c
Confidence            4

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=100.00  E-value=3.6e-35  Score=228.13  Aligned_cols=211  Identities=18%  Similarity=0.193  Sum_probs=155.4

Q ss_pred             HHHHHHHHHhcCCCcccceeeeeeeC--CcceEEEEecCCCCHHHhhcCCCc-----hHHHHHHHHHHHhchhhcCCCCC
Q 044022           16 CINNITYAAQMSHNHILKRIGCCLQT--PIPILVFQSVEYGTLRDCIFGAPL-----PRLKIASDIVNSLAYLHFGFPRP   88 (241)
Q Consensus        16 ~~~e~~~l~~l~h~~iv~~~~~~~~~--~~~~lv~e~~~~~sL~~~l~~~~~-----~~~~~~~~i~~~l~~lh~~~~~~   88 (241)
                      .++||.+|.+++|||||.+..+....  +..|||||||++ +|...+..-..     ....++.|++.|++|||   ...
T Consensus       122 sLREIniLl~~~H~NIV~vkEVVvG~~~d~iy~VMe~~Eh-DLksl~d~m~q~F~~~evK~L~~QlL~glk~lH---~~w  197 (419)
T KOG0663|consen  122 SLREINILLKARHPNIVEVKEVVVGSNMDKIYIVMEYVEH-DLKSLMETMKQPFLPGEVKTLMLQLLRGLKHLH---DNW  197 (419)
T ss_pred             hHHHHHHHHhcCCCCeeeeEEEEeccccceeeeeHHHHHh-hHHHHHHhccCCCchHHHHHHHHHHHHHHHHHh---hce
Confidence            57999999999999999999988754  368999999985 88888865431     35568889999999999   999


Q ss_pred             ceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc-CCCcchhhHHHHHHHHHHHhcC
Q 044022           89 IVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-VLNEKSNVFSFGAFLFELLAGR  167 (241)
Q Consensus        89 ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~~~~~~~g~  167 (241)
                      |+|||||++|+|++..|.+||+|||+++..+......  +..+=|..|+|||.+.+. .|+.+.|+||+|||+.|+++++
T Consensus       198 ilHRDLK~SNLLm~~~G~lKiaDFGLAR~ygsp~k~~--T~lVVTLWYRaPELLLG~~tyst~iDMWSvGCI~aE~l~~k  275 (419)
T KOG0663|consen  198 ILHRDLKTSNLLLSHKGILKIADFGLAREYGSPLKPY--TPLVVTLWYRAPELLLGAKTYSTAVDMWSVGCIFAELLTQK  275 (419)
T ss_pred             eEecccchhheeeccCCcEEecccchhhhhcCCcccC--cceEEEeeecCHHHhcCCcccCcchhhhhHHHHHHHHHhcC
Confidence            9999999999999999999999999999877653222  234557889999999886 5899999999999999999999


Q ss_pred             cccccccccCCCcccchHHHHHHHhh---hccc--------------CCCCCCccccCCCchhHHHHHHHHHHHHHHhcc
Q 044022          168 IHIWDLLKDTHDHGCFFNEYLKNYLE---DKRF--------------TGIPAPIIVQDIPCIEKEQQLHASAQLTLECVN  230 (241)
Q Consensus       168 ~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~  230 (241)
                      +-|.....     ...... ......   +..+              ...+...+...++..   .-++.-.+|++.+|.
T Consensus       276 Plf~G~sE-----~dQl~~-If~llGtPte~iwpg~~~lp~~k~~~f~~~pyn~lr~kF~~~---~lse~g~~Lln~llt  346 (419)
T KOG0663|consen  276 PLFPGKSE-----IDQLDK-IFKLLGTPSEAIWPGYSELPAVKKMTFSEHPYNNLRKKFGAL---SLSEQGFDLLNKLLT  346 (419)
T ss_pred             CCCCCCch-----HHHHHH-HHHHhCCCccccCCCccccchhhccccCCCCchhhhhhcccc---ccchhHHHHHHHHhc
Confidence            88854111     001111 111111   1111              111111122222211   122556799999999


Q ss_pred             CCCCCCCCCCC
Q 044022          231 NSPEDRPTMVD  241 (241)
Q Consensus       231 ~~p~~Rpt~~e  241 (241)
                      +||.+|.||+|
T Consensus       347 ~dP~kR~tA~~  357 (419)
T KOG0663|consen  347 YDPGKRITAED  357 (419)
T ss_pred             cCccccccHHH
Confidence            99999999975

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=100.00  E-value=1.9e-34  Score=228.03  Aligned_cols=198  Identities=22%  Similarity=0.330  Sum_probs=154.2

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc------hHHHHHHHHHHHhchhhcCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL------PRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~------~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ..+.+.+|+.++++++|||++++++++... ..++++||+++++|.+++.....      ..+.++.+++.|+.|||   
T Consensus        42 ~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~al~~lH---  117 (254)
T cd05083          42 TAQAFLEETAVMTKLHHKNLVRLLGVILHN-GLYIVMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLE---  117 (254)
T ss_pred             hHHHHHHHHHHHHhCCCCCcCeEEEEEcCC-CcEEEEECCCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            346789999999999999999999998655 47999999999999999865421      35778999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~  165 (241)
                      +.+++||||+|+||+++.++.++|+|||.+.......     .....+..|+|||.+.+..++.++|+||||+++|++++
T Consensus       118 ~~~~~H~dl~p~nili~~~~~~kl~Dfg~~~~~~~~~-----~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~el~~  192 (254)
T cd05083         118 SKKLVHRDLAARNILVSEDGVAKVSDFGLARVGSMGV-----DNSKLPVKWTAPEALKHKKFSSKSDVWSYGVLLWEVFS  192 (254)
T ss_pred             hCCeeccccCcceEEEcCCCcEEECCCccceeccccC-----CCCCCCceecCHHHhccCCcCchhhHHHHHHHHHHHHh
Confidence            8999999999999999999999999999987543221     12234567999999988889999999999999999997


Q ss_pred             -cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          166 -GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       166 -g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                       |+.||....         ..+..... ..+..   ..  ...        ..+..+.+++.+||+.+|+.|||+++
T Consensus       193 ~g~~p~~~~~---------~~~~~~~~-~~~~~---~~--~~~--------~~~~~~~~li~~~l~~~p~~Rp~~~~  246 (254)
T cd05083         193 YGRAPYPKMS---------LKEVKECV-EKGYR---ME--PPE--------GCPADVYVLMTSCWETEPKKRPSFHK  246 (254)
T ss_pred             CCCCCCccCC---------HHHHHHHH-hCCCC---CC--CCC--------cCCHHHHHHHHHHcCCChhhCcCHHH
Confidence             999985421         11111111 11110   00  011        22367889999999999999999864

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=100.00  E-value=2.8e-35  Score=261.46  Aligned_cols=204  Identities=18%  Similarity=0.234  Sum_probs=156.6

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC----C-----------chHHHHHHHHHH
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA----P-----------LPRLKIASDIVN   76 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~----~-----------~~~~~~~~~i~~   76 (241)
                      ..++|.+|++++++++||||+++++++...+..++||||++|++|.+++...    .           ...+.++.+++.
T Consensus        45 ~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~~lyLVMEY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~  124 (932)
T PRK13184         45 LKKRFLREAKIAADLIHPGIVPVYSICSDGDPVYYTMPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICA  124 (932)
T ss_pred             HHHHHHHHHHHHHhCCCcCcCeEEEEEeeCCEEEEEEEcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHH
Confidence            3567999999999999999999999999999999999999999999987531    0           124678999999


Q ss_pred             HhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCC----------------cceeecccccCCCccCcc
Q 044022           77 SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGE----------------THITTDRVIGTRGYSAPE  140 (241)
Q Consensus        77 ~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~----------------~~~~~~~~~~~~~~~aPE  140 (241)
                      ||.|||   +.+++||||||+||+++.++.++|+|||++.......                .........||+.|+|||
T Consensus       125 AL~yLH---s~GIIHRDLKPeNILLd~dg~vKLiDFGLAk~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE  201 (932)
T PRK13184        125 TIEYVH---SKGVLHRDLKPDNILLGLFGEVVILDWGAAIFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPE  201 (932)
T ss_pred             HHHHHH---HCCccccCCchheEEEcCCCCEEEEecCcceecccccccccccccccccccccccccCCCCCCCCCCCCHH
Confidence            999999   8999999999999999999999999999987652110                001112346899999999


Q ss_pred             cccccCCCcchhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHH
Q 044022          141 YISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHA  220 (241)
Q Consensus       141 ~~~~~~~~~~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (241)
                      ++.+..++.++||||||+++|+|++|+.||......         +....   .. . ..+. ...+      ....+..
T Consensus       202 ~l~g~~~S~kSDIWSLGVILyELLTG~~PF~~~~~~---------ki~~~---~~-i-~~P~-~~~p------~~~iP~~  260 (932)
T PRK13184        202 RLLGVPASESTDIYALGVILYQMLTLSFPYRRKKGR---------KISYR---DV-I-LSPI-EVAP------YREIPPF  260 (932)
T ss_pred             HhcCCCCCcHhHHHHHHHHHHHHHHCCCCCCCcchh---------hhhhh---hh-c-cChh-hccc------cccCCHH
Confidence            999889999999999999999999999999541110         00000   00 0 0000 0000      0122356


Q ss_pred             HHHHHHHhccCCCCCCCCC
Q 044022          221 SAQLTLECVNNSPEDRPTM  239 (241)
Q Consensus       221 ~~~l~~~cl~~~p~~Rpt~  239 (241)
                      +.+++.+||+.||++||+.
T Consensus       261 L~~LI~rcL~~DP~kR~ss  279 (932)
T PRK13184        261 LSQIAMKALAVDPAERYSS  279 (932)
T ss_pred             HHHHHHHHccCChhhCcCH
Confidence            8899999999999999874

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=1e-35  Score=247.05  Aligned_cols=211  Identities=18%  Similarity=0.221  Sum_probs=168.1

Q ss_pred             Cccccccccc-ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHH
Q 044022            1 MKFYGHEYHR-HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIV   75 (241)
Q Consensus         1 iK~~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~   75 (241)
                      ||++.+.+.. ...+.+.+|+++|+.|+|||||+++.+...+..+|+||||+.+|.+++++.++..    ....+..|++
T Consensus        86 iK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~t~~~lylV~eya~~ge~~~yl~~~gr~~e~~ar~~F~q~v  165 (596)
T KOG0586|consen   86 IKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLFSVIETEATLYLVMEYASGGELFDYLVKHGRMKEKEARAKFRQIV  165 (596)
T ss_pred             EEEehhcccChHHHHHHHHHHHHHHhcCCcceeeeeeeeeecceeEEEEEeccCchhHHHHHhcccchhhhhhhhhHHHH
Confidence            4555554432 3446688999999999999999999999999999999999999999999988754    3556788999


Q ss_pred             HHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCC-CcchhhH
Q 044022           76 NSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVL-NEKSNVF  154 (241)
Q Consensus        76 ~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~-~~~~Di~  154 (241)
                      .|++|||   ++.|||||||++|+|++.+.++||+|||++..+.....   ..+.+|++.|.|||++.+..+ .+++|+|
T Consensus       166 saveYcH---~k~ivHrdLk~eNilL~~~mnikIaDfgfS~~~~~~~~---lqt~cgsppyAaPEl~~g~~y~gpe~D~W  239 (596)
T KOG0586|consen  166 SAVEYCH---SKNIVHRDLKAENILLDENMNIKIADFGFSTFFDYGLM---LQTFCGSPPYAAPELFNGKKYDGPEVDIW  239 (596)
T ss_pred             HHHHHHh---hcceeccccchhhcccccccceeeeccccceeeccccc---ccccCCCCCccChHhhcCcccCCcceehh
Confidence            9999999   99999999999999999999999999999988765433   245689999999999998765 5899999


Q ss_pred             HHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCC
Q 044022          155 SFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPE  234 (241)
Q Consensus       155 s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~  234 (241)
                      |+|+++|.++.|..||+..                      .+.......+...+.-.  .-.+.++.+++++++..+|.
T Consensus       240 slgvvly~LV~GsLPFDG~----------------------~lk~Lr~rvl~gk~rIp--~~ms~dce~lLrk~lvl~Ps  295 (596)
T KOG0586|consen  240 SLGVVLYALVEGSLPFDGQ----------------------NLKELRPRVLRGKYRIP--FYMSCDCEDLLRKFLVLNPS  295 (596)
T ss_pred             hhhhhheeeeecccccCCc----------------------ccccccchheeeeeccc--ceeechhHHHHHHhhccCcc
Confidence            9999999999999999641                      11111111111111100  01224678999999999999


Q ss_pred             CCCCCCC
Q 044022          235 DRPTMVD  241 (241)
Q Consensus       235 ~Rpt~~e  241 (241)
                      +|+++++
T Consensus       296 kr~~~dq  302 (596)
T KOG0586|consen  296 KRGPCDQ  302 (596)
T ss_pred             ccCCHHH
Confidence            9999864

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=2.3e-34  Score=229.74  Aligned_cols=208  Identities=20%  Similarity=0.281  Sum_probs=158.7

Q ss_pred             HHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCCCC
Q 044022           13 YGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFPRP   88 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~~~   88 (241)
                      .+.+.+|+.++++++|+|++++++++...+..++|+||+++++|.+++.....    .+..++.+++.||.|||   +.+
T Consensus        52 ~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH---~~~  128 (272)
T cd06629          52 VKALRSEIETLKDLDHLNIVQYLGFETTEEYLSIFLEYVPGGSIGSCLRTYGRFEEQLVRFFTEQVLEGLAYLH---SKG  128 (272)
T ss_pred             HHHHHHHHHHHHhcCCCCcceEEEEeccCCceEEEEecCCCCcHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh---hCC
Confidence            34678899999999999999999999999999999999999999999876432    45678899999999999   899


Q ss_pred             ceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccC--CCcchhhHHHHHHHHHHHhc
Q 044022           89 IVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICV--LNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        89 ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~--~~~~~Di~s~G~~~~~~~~g  166 (241)
                      ++|+||+|+||+++.++.++++|||.+................++..|+|||.+....  ++.++|+||||+++|++++|
T Consensus       129 i~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~g  208 (272)
T cd06629         129 ILHRDLKADNLLVDADGICKISDFGISKKSDDIYDNDQNMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAG  208 (272)
T ss_pred             eeecCCChhhEEEcCCCeEEEeeccccccccccccccccccccCCccccCHHHhccccCCCCccchhHHHHHHHHHHHhC
Confidence            9999999999999999999999999987654322222222345788899999987654  78899999999999999999


Q ss_pred             CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          167 RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ..||.....         .+.............. ......        ..+..+.+++.+||..+|++|||++|
T Consensus       209 ~~p~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~~--------~~~~~~~~li~~~l~~~p~~Rps~~~  265 (272)
T cd06629         209 RRPWSDEEA---------IAAMFKLGNKRSAPPI-PPDVSM--------NLSPVALDFLNACFTINPDNRPTARE  265 (272)
T ss_pred             CCCCcCcch---------HHHHHHhhccccCCcC-Cccccc--------cCCHHHHHHHHHHhcCChhhCCCHHH
Confidence            999854110         1111111111111111 111111        22367889999999999999999764

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=9.5e-35  Score=236.86  Aligned_cols=202  Identities=22%  Similarity=0.264  Sum_probs=157.6

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC------chHHHHHHHHHHHhchhhcCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP------LPRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~------~~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ..+.+.+|+++++.++|+||+++++.+......++||||+.+++|.+++....      .....++.+++.||.|||   
T Consensus        44 ~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH---  120 (316)
T cd05574          44 KVKRVLTEQEILATLDHPFLPTLYASFQTETYLCLVMDYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLH---  120 (316)
T ss_pred             HHHHHHHHHHHHHhCCCCCchhheeeeecCCEEEEEEEecCCCCHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHH---
Confidence            55678899999999999999999999999999999999999999999986532      135678899999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcc---------------------------eeecccccCCCccC
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH---------------------------ITTDRVIGTRGYSA  138 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~a  138 (241)
                      +.+++|+||||+||+++.++.++|+|||.+.........                           .......|+..|+|
T Consensus       121 ~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~a  200 (316)
T cd05574         121 LLGIVYRDLKPENILLHESGHIMLSDFDLSKQSDVEPPPVSKALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIA  200 (316)
T ss_pred             HCCeeccCCChHHeEEcCCCCEEEeecchhhcccccccccccccccccccccccccchhhhcccccCCCCCCcCccCCcC
Confidence            899999999999999999999999999987654322110                           01112357888999


Q ss_pred             cccccccCCCcchhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHH
Q 044022          139 PEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQL  218 (241)
Q Consensus       139 PE~~~~~~~~~~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (241)
                      ||++.+..++.++||||||+++|++++|+.||.....         ........... . ...     ..      ...+
T Consensus       201 PE~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~---------~~~~~~~~~~~-~-~~~-----~~------~~~~  258 (316)
T cd05574         201 PEVISGDGHGSAVDWWTLGILLYEMLYGTTPFKGSNR---------DETFSNILKKE-V-TFP-----GS------PPVS  258 (316)
T ss_pred             HHHHcCCCCCchHHHHHHHHHHHHHhhCCCCCCCCch---------HHHHHHHhcCC-c-cCC-----Cc------cccC
Confidence            9999988899999999999999999999999954211         11111111100 0 000     00      0134


Q ss_pred             HHHHHHHHHhccCCCCCCCC
Q 044022          219 HASAQLTLECVNNSPEDRPT  238 (241)
Q Consensus       219 ~~~~~l~~~cl~~~p~~Rpt  238 (241)
                      ..+.+++.+||..||++|||
T Consensus       259 ~~~~~li~~~l~~~p~~R~s  278 (316)
T cd05574         259 SSARDLIRKLLVKDPSKRLG  278 (316)
T ss_pred             HHHHHHHHHHccCCHhHCCC
Confidence            67999999999999999999

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=9.6e-35  Score=238.36  Aligned_cols=157  Identities=17%  Similarity=0.195  Sum_probs=134.0

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC--c---hHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP--L---PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~--~---~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ..+.+.+|+.+++.++|+||+++++++...++.++||||+++|+|.+++....  .   ....++.||+.||.|||   +
T Consensus        44 ~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~  120 (331)
T cd05597          44 ETACFREERDVLVNGDRRWITNLHYAFQDENNLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVLAIDSVH---Q  120 (331)
T ss_pred             hHHHHHHHHHHHHhCCCCCCCceEEEEecCCeEEEEEecCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---h
Confidence            45568899999999999999999999999999999999999999999986531  1   45678899999999999   9


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc-----cCCCcchhhHHHHHHHH
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI-----CVLNEKSNVFSFGAFLF  161 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-----~~~~~~~Di~s~G~~~~  161 (241)
                      ++++||||||+|||++.++.++|+|||.+.......... .....|++.|+|||++..     ..++.++||||||+++|
T Consensus       121 ~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~  199 (331)
T cd05597         121 LGYVHRDIKPDNVLLDKNGHIRLADFGSCLRLLADGTVQ-SNVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMY  199 (331)
T ss_pred             CCeEECCCCHHHEEECCCCCEEEEECCceeecCCCCCcc-ccceeccccccCHHHHhhccccccCCCCcceeehhhhHHH
Confidence            999999999999999999999999999987654332211 122458999999999863     35678999999999999


Q ss_pred             HHHhcCccccc
Q 044022          162 ELLAGRIHIWD  172 (241)
Q Consensus       162 ~~~~g~~p~~~  172 (241)
                      +|++|+.||..
T Consensus       200 el~~g~~Pf~~  210 (331)
T cd05597         200 EMLYGETPFYA  210 (331)
T ss_pred             HHhhCCCCCCC
Confidence            99999999954

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=100.00  E-value=8.4e-35  Score=232.97  Aligned_cols=204  Identities=23%  Similarity=0.296  Sum_probs=157.4

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC---c---hHHHHHHHHHHHhchhhcCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP---L---PRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~---~---~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ....+.+|++++++++|||++++++++...+..|+|+||+++++|.+++....   .   ....++.+++.|+.|||   
T Consensus        36 ~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH---  112 (277)
T cd05577          36 GEQMALNEKKILEKVSSRFIVSLAYAFETKDDLCLVMTLMNGGDLKYHIYNVGEPGFPEARAIFYAAQIICGLEHLH---  112 (277)
T ss_pred             hhHHHHHHHHHHHhCCCCCEeeeeeEEecCCeEEEEEecCCCCcHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            45567889999999999999999999999999999999999999999886532   1   35678899999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~  165 (241)
                      +.+++|+||+|+||+++.++.++|+|||.+........   .....++..|+|||++.+..++.++|+||||+++|+|++
T Consensus       113 ~~~i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~~~~~---~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~~  189 (277)
T cd05577         113 QRRIVYRDLKPENVLLDDHGNVRISDLGLAVELKGGKK---IKGRAGTPGYMAPEVLQGEVYDFSVDWFALGCTLYEMIA  189 (277)
T ss_pred             hCCcccCCCCHHHEEECCCCCEEEccCcchhhhccCCc---cccccCCCCcCCHHHhcCCCCCchhhhHHHHHHHHHHhh
Confidence            89999999999999999999999999998875543211   122356788999999988888999999999999999999


Q ss_pred             cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          166 GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       166 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      |+.||.......     . .+...    ..... . ......        ..++.+.+++.+||+.||++||+++|
T Consensus       190 g~~p~~~~~~~~-----~-~~~~~----~~~~~-~-~~~~~~--------~~~~~~~~li~~~l~~~p~~R~~~~~  245 (277)
T cd05577         190 GRSPFRQRKEKV-----E-KEELK----RRTLE-M-AVEYPD--------KFSPEAKDLCEALLQKDPEKRLGCRG  245 (277)
T ss_pred             CCCCCCCCcccc-----c-HHHHH----hcccc-c-cccCCc--------cCCHHHHHHHHHHccCChhHccCCCc
Confidence            999996522110     0 00000    00000 0 000111        12367889999999999999996643

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=100.00  E-value=9e-35  Score=229.86  Aligned_cols=202  Identities=25%  Similarity=0.306  Sum_probs=158.7

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC---c---hHHHHHHHHHHHhchhhcC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP---L---PRLKIASDIVNSLAYLHFG   84 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~---~---~~~~~~~~i~~~l~~lh~~   84 (241)
                      .....+.+|++++++++|||++++++.+...+..++|+||+++++|.+++....   .   ....++.+++.|+.|||  
T Consensus        41 ~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh--  118 (256)
T cd08220          41 DERLAAQNECQVLKLLSHPNIIEYYENFLEDKALMIVMEYAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVH--  118 (256)
T ss_pred             HHHHHHHHHHHHHhhCCCCchhheeeeEecCCEEEEEEecCCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH--
Confidence            346778999999999999999999999998999999999999999999986532   1   45778999999999999  


Q ss_pred             CCCCceeccCCCCCeeecCC-CCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHH
Q 044022           85 FPRPIVLRNFKTQNILFNEE-NVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL  163 (241)
Q Consensus        85 ~~~~ivh~dl~~~nil~~~~-~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~  163 (241)
                       +++++|+||+|+||+++.+ +.++++|||.+.........   ....++..|+|||.+.+..++.++|+||||+++|++
T Consensus       119 -~~~i~h~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l  194 (256)
T cd08220         119 -TKLILHRDLKTQNILLDKHKMVVKIGDFGISKILSSKSKA---YTVVGTPCYISPELCEGKPYNQKSDIWALGCVLYEL  194 (256)
T ss_pred             -hCCeecCCCCHHHEEEcCCCCEEEEccCCCceecCCCccc---cccccCCcccCchhccCCCCCcccchHHHHHHHHHH
Confidence             8999999999999999865 46799999998866543211   224578899999999988889999999999999999


Q ss_pred             HhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          164 LAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       164 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ++|+.||....         ......... ........+             ..+..+.+++.+||..+|++|||++|
T Consensus       195 ~~~~~~~~~~~---------~~~~~~~~~-~~~~~~~~~-------------~~~~~l~~li~~~l~~~p~~Rpt~~~  249 (256)
T cd08220         195 ASLKRAFEAAN---------LPALVLKIM-SGTFAPISD-------------RYSPDLRQLILSMLNLDPSKRPQLSQ  249 (256)
T ss_pred             HhCCCCcccCc---------hHHHHHHHH-hcCCCCCCC-------------CcCHHHHHHHHHHccCChhhCCCHHH
Confidence            99999985411         111111111 111111111             12357889999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=100.00  E-value=6.4e-35  Score=230.87  Aligned_cols=202  Identities=19%  Similarity=0.238  Sum_probs=160.3

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC------chHHHHHHHHHHHhchhhcCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP------LPRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~------~~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ...++.+|+.++++++||||+++++++...+..++|+||+++++|.+++....      ...+.++.+++.|+.|||   
T Consensus        42 ~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh---  118 (256)
T cd08218          42 EREESRKEVAVLSNMKHPNIVQYQESFEENGNLYIVMDYCEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVH---  118 (256)
T ss_pred             HHHHHHHHHHHHHhCCCCCeeeeEeeecCCCeEEEEEecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            45678999999999999999999999999999999999999999999886431      246788999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~  165 (241)
                      +.+++|+||+|+||+++.++.++++|||.+.........  .....++..|+|||++.+..++.++|+||||++++++++
T Consensus       119 ~~~i~h~~l~~~nil~~~~~~~~l~d~~~~~~~~~~~~~--~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~i~~~l~~  196 (256)
T cd08218         119 DRKILHRDIKSQNIFLTKDGTIKLGDFGIARVLNSTVEL--ARTCIGTPYYLSPEICENRPYNNKSDIWALGCVLYEMCT  196 (256)
T ss_pred             hCCEecCCCCHHHEEEcCCCCEEEeeccceeecCcchhh--hhhccCCccccCHHHhCCCCCCCccchhHHHHHHHHHHc
Confidence            899999999999999999999999999998765443211  122357888999999988888999999999999999999


Q ss_pred             cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          166 GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       166 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      |+.||...         ...+...... .+.....     ..        ..+..+.+++.+||+.+|++||++.|
T Consensus       197 g~~~~~~~---------~~~~~~~~~~-~~~~~~~-----~~--------~~~~~~~~li~~~l~~~p~~Rp~~~~  249 (256)
T cd08218         197 LKHAFEAG---------NMKNLVLKII-RGSYPPV-----SS--------HYSYDLRNLVSQLFKRNPRDRPSVNS  249 (256)
T ss_pred             CCCCccCC---------CHHHHHHHHh-cCCCCCC-----cc--------cCCHHHHHHHHHHhhCChhhCcCHHH
Confidence            99998541         1111222211 1111111     11        22357899999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=7.2e-36  Score=251.03  Aligned_cols=205  Identities=23%  Similarity=0.339  Sum_probs=163.7

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC-------CchHHHHHHHHHHHhchhhc
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA-------PLPRLKIASDIVNSLAYLHF   83 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~-------~~~~~~~~~~i~~~l~~lh~   83 (241)
                      +..+-+..||.+-++|+|.|||+++|++.+++++-|.||-.+||||.+++...       +.+...+-+||++||.||| 
T Consensus       614 r~~QPLhEEIaLH~~LrHkNIVrYLGs~senGf~kIFMEqVPGGSLSsLLrskWGPlKDNEstm~fYtkQILeGLkYLH-  692 (1226)
T KOG4279|consen  614 REVQPLHEEIALHSTLRHKNIVRYLGSVSENGFFKIFMEQVPGGSLSSLLRSKWGPLKDNESTMNFYTKQILEGLKYLH-  692 (1226)
T ss_pred             hhhccHHHHHHHHHHHhhHhHHHHhhccCCCCeEEEEeecCCCCcHHHHHHhccCCCccchhHHHHHHHHHHHHhhhhh-
Confidence            34555778999999999999999999999999999999999999999998653       2246678999999999999 


Q ss_pred             CCCCCceeccCCCCCeeec-CCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc--CCCcchhhHHHHHHH
Q 044022           84 GFPRPIVLRNFKTQNILFN-EENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC--VLNEKSNVFSFGAFL  160 (241)
Q Consensus        84 ~~~~~ivh~dl~~~nil~~-~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~--~~~~~~Di~s~G~~~  160 (241)
                        +..|||||||-+|+|++ -.|.+||+|||.++.+..-..+.  .+..||..|||||++..+  .|+.++|||||||.+
T Consensus       693 --en~IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAginP~T--ETFTGTLQYMAPEvIDqG~RGYG~aADIWS~GCT~  768 (1226)
T KOG4279|consen  693 --ENKIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAGINPCT--ETFTGTLQYMAPEVIDQGPRGYGKAADIWSFGCTM  768 (1226)
T ss_pred             --hcceeeccccCCcEEEeeccceEEecccccchhhccCCccc--cccccchhhhChHhhccCCcCCCchhhhhhcccee
Confidence              99999999999999997 56899999999998776543332  456799999999999765  588999999999999


Q ss_pred             HHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          161 FELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       161 ~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                      .||.||++||..+.+..       .    ...+-+-+  ..-    +..|    ++.+...+.+|.+|+..||.+||+|.
T Consensus       769 vEMATGrPPF~Elgspq-------A----AMFkVGmy--KvH----P~iP----eelsaeak~FilrcFepd~~~R~sA~  827 (1226)
T KOG4279|consen  769 VEMATGRPPFVELGSPQ-------A----AMFKVGMY--KVH----PPIP----EELSAEAKNFILRCFEPDPCDRPSAK  827 (1226)
T ss_pred             EeeccCCCCeeecCChh-------H----hhhhhcce--ecC----CCCc----HHHHHHHHHHHHHHcCCCcccCccHH
Confidence            99999999997643321       0    00001100  001    1111    35567789999999999999999986


Q ss_pred             C
Q 044022          241 D  241 (241)
Q Consensus       241 e  241 (241)
                      +
T Consensus       828 ~  828 (1226)
T KOG4279|consen  828 D  828 (1226)
T ss_pred             H
Confidence            4

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=100.00  E-value=1.2e-34  Score=229.35  Aligned_cols=202  Identities=21%  Similarity=0.260  Sum_probs=159.7

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ..+.+.+|+++++.++|+||+++++++...+..++++||+++++|.+++.....    ....++.+++.|++|||   +.
T Consensus        45 ~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~  121 (258)
T cd06632          45 AVKQLEQEIALLSKLQHPNIVQYLGTEREEDNLYIFLELVPGGSLAKLLKKYGSFPEPVIRLYTRQILLGLEYLH---DR  121 (258)
T ss_pred             HHHHHHHHHHHHHhcCCCCchheeeeEecCCeEEEEEEecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HC
Confidence            456789999999999999999999999999999999999999999999865532    45678899999999999   89


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccC-CCcchhhHHHHHHHHHHHhc
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICV-LNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~-~~~~~Di~s~G~~~~~~~~g  166 (241)
                      +++|+||+|+||+++.++.++|+|||.+.......   ......++..|+|||.+.... ++.++|+||||+++|++++|
T Consensus       122 ~i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~~~~~---~~~~~~~~~~y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~g  198 (258)
T cd06632         122 NTVHRDIKGANILVDTNGVVKLADFGMAKQVVEFS---FAKSFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATG  198 (258)
T ss_pred             CcccCCCCHHHEEECCCCCEEEccCccceeccccc---cccccCCCcceeCHHHhcCCCCCCchhhhHHHHHHHHHHHhC
Confidence            99999999999999999999999999987654432   113345788899999987766 88999999999999999999


Q ss_pred             CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          167 RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +.||....         ..+.............     +..        ..++.+.+++++||+.+|++|||++|
T Consensus       199 ~~pf~~~~---------~~~~~~~~~~~~~~~~-----~~~--------~~~~~~~~li~~~l~~~p~~Rp~~~~  251 (258)
T cd06632         199 KPPWSQLE---------GVAAVFKIGRSKELPP-----IPD--------HLSDEAKDFILKCLQRDPSLRPTAAE  251 (258)
T ss_pred             CCCcccCc---------HHHHHHHHHhcccCCC-----cCC--------CcCHHHHHHHHHHhhcCcccCcCHHH
Confidence            99996521         1111111111111111     111        12357889999999999999999864

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=4.5e-35  Score=241.46  Aligned_cols=152  Identities=20%  Similarity=0.291  Sum_probs=129.5

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeC------CcceEEEEecCCCCHHHhhcCCCc---hHHHHHHHHHHHhchhh
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQT------PIPILVFQSVEYGTLRDCIFGAPL---PRLKIASDIVNSLAYLH   82 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~------~~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~i~~~l~~lh   82 (241)
                      ....+.+|++++++++||||+++++++...      ...+++++++ +++|.+++.....   ....++.|++.||.|||
T Consensus        57 ~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH  135 (343)
T cd07878          57 HARRTYRELRLLKHMKHENVIGLLDVFTPATSIENFNEVYLVTNLM-GADLNNIVKCQKLSDEHVQFLIYQLLRGLKYIH  135 (343)
T ss_pred             HHHHHHHHHHHHHhcCCCchhhhhhhhcccccccccCcEEEEeecC-CCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            445678999999999999999999988643      3468999988 6899988865433   46778999999999999


Q ss_pred             cCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc-cCCCcchhhHHHHHHHH
Q 044022           83 FGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI-CVLNEKSNVFSFGAFLF  161 (241)
Q Consensus        83 ~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~~~  161 (241)
                         +.+++||||||+||+++.++.+||+|||++.......     ....+++.|+|||++.+ ..++.++||||||+++|
T Consensus       136 ---~~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~~-----~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~  207 (343)
T cd07878         136 ---SAGIIHRDLKPSNVAVNEDCELRILDFGLARQADDEM-----TGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA  207 (343)
T ss_pred             ---HCCeecccCChhhEEECCCCCEEEcCCccceecCCCc-----CCccccccccCchHhcCCccCCchhhhHhHHHHHH
Confidence               9999999999999999999999999999987654322     23467889999999876 46889999999999999


Q ss_pred             HHHhcCccccc
Q 044022          162 ELLAGRIHIWD  172 (241)
Q Consensus       162 ~~~~g~~p~~~  172 (241)
                      +|++|+.||..
T Consensus       208 el~~g~~pf~~  218 (343)
T cd07878         208 ELLKGKALFPG  218 (343)
T ss_pred             HHHHCCCCCCC
Confidence            99999999954

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=100.00  E-value=5.3e-35  Score=233.33  Aligned_cols=203  Identities=23%  Similarity=0.298  Sum_probs=153.9

Q ss_pred             cHHHHHHHHHHHHhc-CCCcccceeeeeeeC------CcceEEEEecCCCCHHHhhcCCC---c---hHHHHHHHHHHHh
Q 044022           12 TYGSCINNITYAAQM-SHNHILKRIGCCLQT------PIPILVFQSVEYGTLRDCIFGAP---L---PRLKIASDIVNSL   78 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~------~~~~lv~e~~~~~sL~~~l~~~~---~---~~~~~~~~i~~~l   78 (241)
                      ....+.+|+.+++++ +|+|++++++++...      ...++++||+.+++|.+++....   .   ....++.|++.|+
T Consensus        45 ~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~iv~e~~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l  124 (272)
T cd06637          45 EEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGL  124 (272)
T ss_pred             cHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCCCcEEEEEEEcCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHH
Confidence            456788999999999 799999999998753      35789999999999999887532   1   3567899999999


Q ss_pred             chhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccc-----ccCCCcchhh
Q 044022           79 AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYIS-----ICVLNEKSNV  153 (241)
Q Consensus        79 ~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~-----~~~~~~~~Di  153 (241)
                      +|||   +++++|+||+|+||+++.++.++|+|||++........  ......++..|+|||++.     ...++.++|+
T Consensus       125 ~~LH---~~~ivh~dl~~~nili~~~~~~~l~Dfg~~~~~~~~~~--~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv  199 (272)
T cd06637         125 SHLH---QHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVG--RRNTFIGTPYWMAPEVIACDENPDATYDFKSDL  199 (272)
T ss_pred             HHHH---HCCCccCCCCHHHEEECCCCCEEEccCCCceecccccc--cCCcccccccccCHhHhccccCcCCCCCchhhH
Confidence            9999   89999999999999999999999999999876533211  123346788999999986     3357889999


Q ss_pred             HHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCC
Q 044022          154 FSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSP  233 (241)
Q Consensus       154 ~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p  233 (241)
                      ||||+++|+|++|..||......        ... ... ...     .......       ...+..+.+++.+||..||
T Consensus       200 ~slGv~l~el~~g~~p~~~~~~~--------~~~-~~~-~~~-----~~~~~~~-------~~~~~~~~~li~~~l~~~p  257 (272)
T cd06637         200 WSLGITAIEMAEGAPPLCDMHPM--------RAL-FLI-PRN-----PAPRLKS-------KKWSKKFQSFIESCLVKNH  257 (272)
T ss_pred             HHHHHHHHHHHhCCCCccccCHH--------HHH-HHH-hcC-----CCCCCCC-------CCcCHHHHHHHHHHcCCCh
Confidence            99999999999999999542110        000 000 000     0000000       0122568899999999999


Q ss_pred             CCCCCCCC
Q 044022          234 EDRPTMVD  241 (241)
Q Consensus       234 ~~Rpt~~e  241 (241)
                      .+|||++|
T Consensus       258 ~~Rpt~~~  265 (272)
T cd06637         258 SQRPTTEQ  265 (272)
T ss_pred             hhCCCHHH
Confidence            99999854

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=100.00  E-value=1.3e-34  Score=232.57  Aligned_cols=156  Identities=20%  Similarity=0.240  Sum_probs=133.1

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ..+.+.+|++++++++|+|++++++++......++|+||+++++|..++....    ..+..++.+++.||.|||   +.
T Consensus        43 ~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~ql~~~l~~LH---~~  119 (286)
T cd07847          43 IKKIALREIRMLKQLKHPNLVNLIEVFRRKRKLHLVFEYCDHTVLNELEKNPRGVPEHLIKKIIWQTLQAVNFCH---KH  119 (286)
T ss_pred             ccHHHHHHHHHHHhCCCCCEeeeeeEEeeCCEEEEEEeccCccHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---HC
Confidence            44568899999999999999999999999999999999999888887765432    246789999999999999   89


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc-cCCCcchhhHHHHHHHHHHHhc
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI-CVLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      +++|+||+|+||+++.++.++|+|||.+.........  .....++..|+|||++.+ ..++.++|+||||+++|+|++|
T Consensus       120 ~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~i~~~l~~g  197 (286)
T cd07847         120 NCIHRDVKPENILITKQGQIKLCDFGFARILTGPGDD--YTDYVATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTG  197 (286)
T ss_pred             CceecCCChhhEEEcCCCcEEECccccceecCCCccc--ccCcccccccCCHHHHhCCCCcCchhhhHHHHHHHHHHHhC
Confidence            9999999999999999999999999998766543211  122346788999999876 4578899999999999999999


Q ss_pred             Cccccc
Q 044022          167 RIHIWD  172 (241)
Q Consensus       167 ~~p~~~  172 (241)
                      .+||..
T Consensus       198 ~~p~~~  203 (286)
T cd07847         198 QPLWPG  203 (286)
T ss_pred             CCCCCC
Confidence            999964

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=7.4e-35  Score=233.53  Aligned_cols=204  Identities=20%  Similarity=0.279  Sum_probs=157.1

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ..+.|.+|++++++++|+|++++++++...+..++||||+++++|.+++....     .....++.+++.|+.|||   +
T Consensus        45 ~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh---~  121 (280)
T cd06611          45 ELEDFMVEIDILSECKHPNIVGLYEAYFYENKLWILIEFCDGGALDSIMLELERGLTEPQIRYVCRQMLEALNFLH---S  121 (280)
T ss_pred             HHHHHHHHHHHHHhCCCCceeEEEEEEecCCeEEEEeeccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            45678899999999999999999999999999999999999999999986532     256789999999999999   9


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccc-----ccCCCcchhhHHHHHHHH
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYIS-----ICVLNEKSNVFSFGAFLF  161 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~-----~~~~~~~~Di~s~G~~~~  161 (241)
                      .+++|+||+|+||+++.++.++|+|||.+........  ......++..|+|||.+.     ...++.++|+||||+++|
T Consensus       122 ~~i~h~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~--~~~~~~~~~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~  199 (280)
T cd06611         122 HKVIHRDLKAGNILLTLDGDVKLADFGVSAKNKSTLQ--KRDTFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLI  199 (280)
T ss_pred             CCcccCCCChhhEEECCCCCEEEccCccchhhccccc--ccceeecchhhcCHHHHhhcccCCCCCCccccHHHHHHHHH
Confidence            9999999999999999999999999998765433221  112345788899999875     345678999999999999


Q ss_pred             HHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          162 ELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       162 ~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +|++|+.||.....         .+...... ....     +.+..      ....+..+.+++.+||..+|.+|||+++
T Consensus       200 ~l~~g~~p~~~~~~---------~~~~~~~~-~~~~-----~~~~~------~~~~~~~~~~li~~~l~~~p~~Rps~~~  258 (280)
T cd06611         200 ELAQMEPPHHELNP---------MRVLLKIL-KSEP-----PTLDQ------PSKWSSSFNDFLKSCLVKDPDDRPTAAE  258 (280)
T ss_pred             HHHhCCCCcccCCH---------HHHHHHHh-cCCC-----CCcCC------cccCCHHHHHHHHHHhccChhhCcCHHH
Confidence            99999999865211         11111111 1100     00000      0122356889999999999999999853

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=100.00  E-value=1.7e-34  Score=236.70  Aligned_cols=158  Identities=18%  Similarity=0.198  Sum_probs=129.2

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC---c---hHHHHHHHHHHHhchhhcCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP---L---PRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~---~---~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ..+.+.+|+.+++.++||||++++++|..++..++|+||+.+++|.+++....   .   ....++.|++.||.|||   
T Consensus        42 ~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~lH---  118 (328)
T cd08226          42 HLKALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWVISPFMAYGSANSLLKTYFPEGMSEALIGNILFGALRGLNYLH---  118 (328)
T ss_pred             HHHHHHHHHHHHHhCCCCCcceEeeeEecCCceEEEEecccCCCHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHH---
Confidence            45778899999999999999999999999999999999999999999886532   1   34578999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcc-----eeecccccCCCccCccccccc--CCCcchhhHHHHH
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH-----ITTDRVIGTRGYSAPEYISIC--VLNEKSNVFSFGA  158 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~-----~~~~~~~~~~~~~aPE~~~~~--~~~~~~Di~s~G~  158 (241)
                      +.+++||||||+||+++.++.++++||+.+.........     .......++..|+|||++.+.  .++.++||||||+
T Consensus       119 ~~~ivHrDlkp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~  198 (328)
T cd08226         119 QNGYIHRNIKASHILISGDGLVSLSGLSHLYSLVRNGQKAKVVYDFPQFSTSVLPWLSPELLRQDLYGYNVKSDIYSVGI  198 (328)
T ss_pred             hCCeecCCCCHHHEEEeCCCcEEEechHHHhhhhccCccccccccccccccCccCccChhhhcCCCCCCCchhhHHHHHH
Confidence            899999999999999999999999999754332211100     001112345679999999763  4789999999999


Q ss_pred             HHHHHHhcCccccc
Q 044022          159 FLFELLAGRIHIWD  172 (241)
Q Consensus       159 ~~~~~~~g~~p~~~  172 (241)
                      ++|++++|+.||..
T Consensus       199 ~l~el~~g~~p~~~  212 (328)
T cd08226         199 TACELATGRVPFQD  212 (328)
T ss_pred             HHHHHHhCCCCCCC
Confidence            99999999999965

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=7e-35  Score=260.08  Aligned_cols=205  Identities=20%  Similarity=0.324  Sum_probs=153.2

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeC--CcceEEEEecCCCCHHHhhcCC-----C---chHHHHHHHHHHHhch
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQT--PIPILVFQSVEYGTLRDCIFGA-----P---LPRLKIASDIVNSLAY   80 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~--~~~~lv~e~~~~~sL~~~l~~~-----~---~~~~~~~~~i~~~l~~   80 (241)
                      .....|.+|+.++++|+|||||+++++|...  ..+|+||||+++++|.+++...     .   ...+.++.||+.||.|
T Consensus        54 ~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~~~~lyIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaY  133 (1021)
T PTZ00266         54 REKSQLVIEVNVMRELKHKNIVRYIDRFLNKANQKLYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAY  133 (1021)
T ss_pred             HHHHHHHHHHHHHHHcCCCCcCeEEEEEEecCCCEEEEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHH
Confidence            3456789999999999999999999988653  4689999999999999988642     1   1467899999999999


Q ss_pred             hhcCC----CCCceeccCCCCCeeecC-----------------CCCeEEeeccCceecCCCCcceeecccccCCCccCc
Q 044022           81 LHFGF----PRPIVLRNFKTQNILFNE-----------------ENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAP  139 (241)
Q Consensus        81 lh~~~----~~~ivh~dl~~~nil~~~-----------------~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aP  139 (241)
                      ||...    ..+|+|+||||+|||++.                 .+.+||+|||++........   .....+++.|+||
T Consensus       134 LHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~i~~~~~n~ng~~iVKLsDFGlAr~l~~~s~---~~s~vGTp~YmAP  210 (1021)
T PTZ00266        134 CHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKITAQANNLNGRPIAKIGDFGLSKNIGIESM---AHSCVGTPYYWSP  210 (1021)
T ss_pred             HHhcccccccCCceeccCcHHHeEeecCccccccccccccccCCCCceEEccCCcccccccccc---ccccCCCccccCH
Confidence            99321    145999999999999964                 34589999999876543321   1234689999999


Q ss_pred             ccccc--cCCCcchhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHH
Q 044022          140 EYISI--CVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQ  217 (241)
Q Consensus       140 E~~~~--~~~~~~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (241)
                      |++.+  ..++.++|||||||++|+|++|..||....        ........... ..  ..+.    .        ..
T Consensus       211 EvL~ge~~~~s~KSDVWSLG~ILYELLTGk~PF~~~~--------~~~qli~~lk~-~p--~lpi----~--------~~  267 (1021)
T PTZ00266        211 ELLLHETKSYDDKSDMWALGCIIYELCSGKTPFHKAN--------NFSQLISELKR-GP--DLPI----K--------GK  267 (1021)
T ss_pred             HHHhccCCCCCchhHHHHHHHHHHHHHHCCCCCCcCC--------cHHHHHHHHhc-CC--CCCc----C--------CC
Confidence            99864  357899999999999999999999995411        11112221111 10  0000    0        12


Q ss_pred             HHHHHHHHHHhccCCCCCCCCCCC
Q 044022          218 LHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       218 ~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +..+.+||..||..+|.+|||+.|
T Consensus       268 S~eL~dLI~~~L~~dPeeRPSa~Q  291 (1021)
T PTZ00266        268 SKELNILIKNLLNLSAKERPSALQ  291 (1021)
T ss_pred             CHHHHHHHHHHhcCChhHCcCHHH
Confidence            357889999999999999999853

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=100.00  E-value=1.8e-34  Score=229.08  Aligned_cols=207  Identities=20%  Similarity=0.288  Sum_probs=164.1

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      .....+.+|++++.+++|+|++++++++...+..++|+||+++++|.+++....    .....++.+++.|+.|||   +
T Consensus        41 ~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~~l~~~l~~lh---~  117 (264)
T cd06623          41 EFRKQLLRELKTLRSCESPYVVKCYGAFYKEGEISIVLEYMDGGSLADLLKKVGKIPEPVLAYIARQILKGLDYLH---T  117 (264)
T ss_pred             HHHHHHHHHHHHHHhcCCCCeeeEEEEEccCCeEEEEEEecCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHh---c
Confidence            456789999999999999999999999999999999999999999999987532    246789999999999999   8


Q ss_pred             -CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh
Q 044022           87 -RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        87 -~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~  165 (241)
                       .+++|+||+|+||+++.++.++|+|||.+..........  ....++..|+|||.+....++.++|+||||+++|++++
T Consensus       118 ~~~~~H~~l~~~ni~~~~~~~~~l~df~~~~~~~~~~~~~--~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~t  195 (264)
T cd06623         118 KRHIIHRDIKPSNLLINSKGEVKIADFGISKVLENTLDQC--NTFVGTVTYMSPERIQGESYSYAADIWSLGLTLLECAL  195 (264)
T ss_pred             cCCCccCCCCHHHEEECCCCCEEEccCccceecccCCCcc--cceeecccccCHhhhCCCCCCchhhHHHHHHHHHHHHh
Confidence             999999999999999999999999999987665433221  23457788999999988888999999999999999999


Q ss_pred             cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          166 GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       166 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      |+.||.....      ....+....... ...     ......       ..+..+.+++.+||..+|++|||+.|
T Consensus       196 g~~p~~~~~~------~~~~~~~~~~~~-~~~-----~~~~~~-------~~~~~l~~li~~~l~~~p~~R~~~~~  252 (264)
T cd06623         196 GKFPFLPPGQ------PSFFELMQAICD-GPP-----PSLPAE-------EFSPEFRDFISACLQKDPKKRPSAAE  252 (264)
T ss_pred             CCCCCccccc------cCHHHHHHHHhc-CCC-----CCCCcc-------cCCHHHHHHHHHHccCChhhCCCHHH
Confidence            9999966321      011222222211 111     111111       13367899999999999999999864

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-34  Score=232.64  Aligned_cols=219  Identities=22%  Similarity=0.286  Sum_probs=169.0

Q ss_pred             ccccHHHHHHHHHHHHhc--CCCcccceeeeeeeCC----cceEEEEecCCCCHHHhhcCCCc---hHHHHHHHHHHHhc
Q 044022            9 HRHTYGSCINNITYAAQM--SHNHILKRIGCCLQTP----IPILVFQSVEYGTLRDCIFGAPL---PRLKIASDIVNSLA   79 (241)
Q Consensus         9 ~~~~~~~~~~e~~~l~~l--~h~~iv~~~~~~~~~~----~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~i~~~l~   79 (241)
                      ...+++++.+|.+|++..  +|+||+.+++.=..+.    ++|+|++|.+.|||+|+|...+.   ..++++..++.||+
T Consensus       243 ~srdE~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs~TQLwLvTdYHe~GSL~DyL~r~tv~~~~ml~LalS~AsGLa  322 (513)
T KOG2052|consen  243 SSRDERSWFRETEIYQTVMLRHENILGFIAADNKDNGSWTQLWLVTDYHEHGSLYDYLNRNTVTTEGMLKLALSIASGLA  322 (513)
T ss_pred             cccchhhhhhHHHHHHHHHhccchhhhhhhccccCCCceEEEEEeeecccCCcHHHHHhhccCCHHHHHHHHHHHhhhHH
Confidence            346788999999999885  9999999988754332    68999999999999999998866   46889999999999


Q ss_pred             hhh-----cCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCC--CcceeecccccCCCccCcccccccCC-----
Q 044022           80 YLH-----FGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEG--ETHITTDRVIGTRGYSAPEYISICVL-----  147 (241)
Q Consensus        80 ~lh-----~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~--~~~~~~~~~~~~~~~~aPE~~~~~~~-----  147 (241)
                      +||     +..+..|.|||||.+|||+.+++.+-|+|+|++..-...  ......+..+||..|||||++.....     
T Consensus       323 HLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~IADLGLAv~h~~~t~~idi~~N~rVGTKRYMAPEvLdetin~~~Fe  402 (513)
T KOG2052|consen  323 HLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSDTDTIDIPPNPRVGTKRYMAPEVLDETINMKHFE  402 (513)
T ss_pred             HHHHHHhcCCCCchhhccccccccEEEccCCcEEEeeceeeEEecccCCcccCCCCCccceeeccChHHhhhhcChhhhh
Confidence            999     344566999999999999999999999999999865543  23344566789999999999975421     


Q ss_pred             -CcchhhHHHHHHHHHHHhc----------CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHH
Q 044022          148 -NEKSNVFSFGAFLFELLAG----------RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQ  216 (241)
Q Consensus       148 -~~~~Di~s~G~~~~~~~~g----------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (241)
                       -..+||||||+++||+..+          ++||++....++     -.+.++.......+.+.++.++       ....
T Consensus       403 syk~ADIYafgLVlWEiarRc~~ggi~eey~~Pyyd~Vp~DP-----s~eeMrkVVCv~~~RP~ipnrW-------~s~~  470 (513)
T KOG2052|consen  403 SYKRADIYAFGLVLWEIARRCESGGIVEEYQLPYYDVVPSDP-----SFEEMRKVVCVQKLRPNIPNRW-------KSDP  470 (513)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhcCCEehhhcCCcccCCCCCC-----CHHHHhcceeecccCCCCCccc-------ccCH
Confidence             1468999999999999864          478887654432     2233333333333333333333       3336


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCC
Q 044022          217 QLHASAQLTLECVNNSPEDRPTM  239 (241)
Q Consensus       217 ~~~~~~~l~~~cl~~~p~~Rpt~  239 (241)
                      ....+..+|+.||..||.-|-||
T Consensus       471 ~l~~m~klMkeCW~~Np~aRltA  493 (513)
T KOG2052|consen  471 ALRVMAKLMKECWYANPAARLTA  493 (513)
T ss_pred             HHHHHHHHHHHhhcCCchhhhHH
Confidence            77888999999999999999886

>PTZ00036 glycogen synthase kinase; Provisional

Probab=100.00  E-value=4.4e-35  Score=248.50  Aligned_cols=215  Identities=16%  Similarity=0.194  Sum_probs=147.7

Q ss_pred             HHHHHHHHHHhcCCCcccceeeeeeeC--------CcceEEEEecCCCCHHHhhcC----C-Cc---hHHHHHHHHHHHh
Q 044022           15 SCINNITYAAQMSHNHILKRIGCCLQT--------PIPILVFQSVEYGTLRDCIFG----A-PL---PRLKIASDIVNSL   78 (241)
Q Consensus        15 ~~~~e~~~l~~l~h~~iv~~~~~~~~~--------~~~~lv~e~~~~~sL~~~l~~----~-~~---~~~~~~~~i~~~l   78 (241)
                      ...+|+.++++++||||+++++++...        ..+++||||++ ++|.+++..    . ..   ....++.|++.||
T Consensus       105 ~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~~~~l~lvmE~~~-~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL  183 (440)
T PTZ00036        105 YKNRELLIMKNLNHINIIFLKDYYYTECFKKNEKNIFLNVVMEFIP-QTVHKYMKHYARNNHALPLFLVKLYSYQLCRAL  183 (440)
T ss_pred             hHHHHHHHHHhcCCCCCcceeeeEeecccccCCCceEEEEEEecCC-ccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Confidence            345799999999999999998887532        24679999997 578776642    1 11   3567889999999


Q ss_pred             chhhcCCCCCceeccCCCCCeeecCCC-CeEEeeccCceecCCCCcceeecccccCCCccCccccccc-CCCcchhhHHH
Q 044022           79 AYLHFGFPRPIVLRNFKTQNILFNEEN-VAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-VLNEKSNVFSF  156 (241)
Q Consensus        79 ~~lh~~~~~~ivh~dl~~~nil~~~~~-~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~  156 (241)
                      .|||   +++|+||||||+|||++.++ .+||+|||++.........   ....+++.|+|||++.+. .++.++|||||
T Consensus       184 ~yLH---~~~IiHrDLKp~NILl~~~~~~vkL~DFGla~~~~~~~~~---~~~~~t~~y~aPE~~~~~~~~~~~~DiwSl  257 (440)
T PTZ00036        184 AYIH---SKFICHRDLKPQNLLIDPNTHTLKLCDFGSAKNLLAGQRS---VSYICSRFYRAPELMLGATNYTTHIDLWSL  257 (440)
T ss_pred             HHHH---HCCEecCCcCHHHEEEcCCCCceeeeccccchhccCCCCc---ccCCCCcCccCHHHhcCCCCCCcHHHHHHH
Confidence            9999   99999999999999998665 7999999999765433221   234678999999998764 68999999999


Q ss_pred             HHHHHHHHhcCcccccccccCCCcccchHHHHHHHh---------hhcccCCCCCCccc-cCCCchhHHHHHHHHHHHHH
Q 044022          157 GAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYL---------EDKRFTGIPAPIIV-QDIPCIEKEQQLHASAQLTL  226 (241)
Q Consensus       157 G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~  226 (241)
                      ||++|+|++|.+||......     ...........         ....+....-+... .+.........+..+.+|+.
T Consensus       258 Gvil~elltG~~pf~~~~~~-----~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~li~  332 (440)
T PTZ00036        258 GCIIAEMILGYPIFSGQSSV-----DQLVRIIQVLGTPTEDQLKEMNPNYADIKFPDVKPKDLKKVFPKGTPDDAINFIS  332 (440)
T ss_pred             HHHHHHHHhCCCCCCCCChH-----HHHHHHHHHhCCCCHHHHHHhchhhhcccCCccCchhHHHHhccCCCHHHHHHHH
Confidence            99999999999999652111     00111100000         00000000000000 00000000123357889999


Q ss_pred             HhccCCCCCCCCCCC
Q 044022          227 ECVNNSPEDRPTMVD  241 (241)
Q Consensus       227 ~cl~~~p~~Rpt~~e  241 (241)
                      +||.+||.+|||+.|
T Consensus       333 ~~L~~dP~~R~ta~e  347 (440)
T PTZ00036        333 QFLKYEPLKRLNPIE  347 (440)
T ss_pred             HHCCCChhHCcCHHH
Confidence            999999999999854

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=100.00  E-value=3.6e-34  Score=230.31  Aligned_cols=204  Identities=17%  Similarity=0.274  Sum_probs=159.8

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc---hHHHHHHHHHHHhchhhcCCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL---PRLKIASDIVNSLAYLHFGFPRP   88 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~i~~~l~~lh~~~~~~   88 (241)
                      ..+.+.+|+.++++++|+|++++++++...+..++++||+++++|.+++.....   ....++.+++.|+++||   +.+
T Consensus        59 ~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~ql~~~l~~lH---~~~  135 (285)
T cd06648          59 RRELLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIATVCLAVLKALSFLH---AQG  135 (285)
T ss_pred             HHHHHHHHHHHHHHcCCCChheEEEEEEcCCeEEEEEeccCCCCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH---hCC
Confidence            456688999999999999999999999999999999999999999999876432   45789999999999999   999


Q ss_pred             ceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcCc
Q 044022           89 IVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRI  168 (241)
Q Consensus        89 ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~~  168 (241)
                      ++||||+|+||+++.++.++++|||.+........  ......++..|+|||.+.+..++.++|+||||+++|++++|..
T Consensus       136 i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGv~l~ell~g~~  213 (285)
T cd06648         136 VIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKEVP--RRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEP  213 (285)
T ss_pred             eecCCCChhhEEEcCCCcEEEcccccchhhccCCc--ccccccCCccccCHHHhcCCCCCCcccHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999998765433221  1123457889999999988888999999999999999999999


Q ss_pred             ccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          169 HIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       169 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ||....         ............      .+.....      ...+..+.+++.+||+.+|++|||+.|
T Consensus       214 p~~~~~---------~~~~~~~~~~~~------~~~~~~~------~~~~~~l~~li~~~l~~~p~~Rpt~~~  265 (285)
T cd06648         214 PYFNEP---------PLQAMKRIRDNL------PPKLKNL------HKVSPRLRSFLDRMLVRDPAQRATAAE  265 (285)
T ss_pred             CCcCCC---------HHHHHHHHHhcC------CCCCccc------ccCCHHHHHHHHHHcccChhhCcCHHH
Confidence            985411         111111111110      0011000      012357899999999999999999864

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=100.00  E-value=2.2e-34  Score=229.19  Aligned_cols=204  Identities=20%  Similarity=0.244  Sum_probs=153.8

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeee--CCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQ--TPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~--~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ....+.+|++++++++||||+++++++..  ....++++||+++++|.+++....    .....++.+++.||.|||   
T Consensus        47 ~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l~~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~LH---  123 (266)
T cd06651          47 EVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTLTIFMEYMPGGSVKDQLKAYGALTESVTRKYTRQILEGMSYLH---  123 (266)
T ss_pred             HHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            34568889999999999999999998875  356789999999999999886542    245678999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCc-ceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHH
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGET-HITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~-~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~  164 (241)
                      +.+++|+||+|+||+++.++.++|+|||++........ ........++..|+|||++.+..++.++|+||||+++|+++
T Consensus       124 ~~~i~H~~l~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~el~  203 (266)
T cd06651         124 SNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICMSGTGIRSVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEML  203 (266)
T ss_pred             hCCeeeCCCCHHHEEECCCCCEEEccCCCccccccccccCCccccCCccccccCHHHhCCCCCCchhhhHHHHHHHHHHH
Confidence            89999999999999999999999999999875533211 11112234788899999998888999999999999999999


Q ss_pred             hcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          165 AGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       165 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +|+.||.....         ...........     ..+.+..        ...+.+.+++ +||..+|++|||++|
T Consensus       204 ~g~~pf~~~~~---------~~~~~~~~~~~-----~~~~~~~--------~~~~~~~~li-~~~~~~p~~Rp~~~e  257 (266)
T cd06651         204 TEKPPWAEYEA---------MAAIFKIATQP-----TNPQLPS--------HISEHARDFL-GCIFVEARHRPSAEE  257 (266)
T ss_pred             HCCCCccccch---------HHHHHHHhcCC-----CCCCCch--------hcCHHHHHHH-HHhcCChhhCcCHHH
Confidence            99999964211         11111111111     0111111        2235567777 688899999999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=100.00  E-value=1.1e-34  Score=234.26  Aligned_cols=204  Identities=19%  Similarity=0.278  Sum_probs=159.7

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc---hHHHHHHHHHHHhchhhcCCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL---PRLKIASDIVNSLAYLHFGFPRP   88 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~i~~~l~~lh~~~~~~   88 (241)
                      ..+.+.+|+.++++++|||++++++++...+..++|+||+++++|.+++.+...   .+..++.+++.|+.|||   +.+
T Consensus        59 ~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~l~~~~~~~i~~~l~~al~~LH---~~g  135 (293)
T cd06647          59 KKELIINEILVMRENKHPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLH---SNQ  135 (293)
T ss_pred             HHHHHHHHHHHHhhcCCCCeeehhheeeeCCcEEEEEecCCCCcHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH---hCC
Confidence            456788999999999999999999999999999999999999999999876533   45778999999999999   999


Q ss_pred             ceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcCc
Q 044022           89 IVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRI  168 (241)
Q Consensus        89 ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~~  168 (241)
                      ++|+||+|+||+++.++.++|+|||.+.........  .....+++.|+|||.+....++.++|+||||+++|++++|+.
T Consensus       136 i~H~dL~p~Nili~~~~~~kL~dfg~~~~~~~~~~~--~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~ll~~ll~g~~  213 (293)
T cd06647         136 VIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK--RSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEP  213 (293)
T ss_pred             EeeccCCHHHEEEcCCCCEEEccCcceecccccccc--cccccCChhhcCchhhccCCCCchhhHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999988655433221  123457888999999988888999999999999999999999


Q ss_pred             ccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          169 HIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       169 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ||.......         ........+      .+...      .....+..+.+++.+||..+|++|||++|
T Consensus       214 pf~~~~~~~---------~~~~~~~~~------~~~~~------~~~~~~~~l~~li~~~l~~~p~~Rp~~~~  265 (293)
T cd06647         214 PYLNENPLR---------ALYLIATNG------TPELQ------NPEKLSAIFRDFLNRCLEMDVEKRGSAKE  265 (293)
T ss_pred             CCCCCChhh---------heeehhcCC------CCCCC------CccccCHHHHHHHHHHccCChhhCcCHHH
Confidence            995421100         000000000      00000      01123356889999999999999999853

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=100.00  E-value=2.5e-35  Score=233.44  Aligned_cols=205  Identities=26%  Similarity=0.394  Sum_probs=157.0

Q ss_pred             HHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcC-CC---chHHHHHHHHHHHhchhhcCCCCCce
Q 044022           15 SCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFG-AP---LPRLKIASDIVNSLAYLHFGFPRPIV   90 (241)
Q Consensus        15 ~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~-~~---~~~~~~~~~i~~~l~~lh~~~~~~iv   90 (241)
                      ...+|+.++++++||||+++++++......++|||++.+++|.+++.. ..   ..+..++.+++.||.+||   +.+++
T Consensus        44 ~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~v~~~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~Lh---~~~i~  120 (260)
T PF00069_consen   44 ENIREIKILRRLRHPNIVQILDVFQDDNYLYIVMEYCPGGSLQDYLQKNKPLSEEEILKIAYQILEALAYLH---SKGIV  120 (260)
T ss_dssp             HHHHHHHHHHHHTBTTBCHEEEEEEESSEEEEEEEEETTEBHHHHHHHHSSBBHHHHHHHHHHHHHHHHHHH---HTTEE
T ss_pred             hhhhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---ccccc
Confidence            345699999999999999999999999999999999998899999872 22   256889999999999999   89999


Q ss_pred             eccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccc-ccCCCcchhhHHHHHHHHHHHhcCcc
Q 044022           91 LRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYIS-ICVLNEKSNVFSFGAFLFELLAGRIH  169 (241)
Q Consensus        91 h~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~-~~~~~~~~Di~s~G~~~~~~~~g~~p  169 (241)
                      |+||||+||+++.++.++|+|||.+.......  .......++..|+|||+.. +...+.++|+||+|+++|+|++|..|
T Consensus       121 H~dikp~NIl~~~~~~~~l~Dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~p  198 (260)
T PF00069_consen  121 HRDIKPENILLDENGEVKLIDFGSSVKLSENN--ENFNPFVGTPEYMAPEVLQQGKKYTRKSDIWSLGIILYELLTGKLP  198 (260)
T ss_dssp             ESSBSGGGEEESTTSEEEESSGTTTEESTSTT--SEBSSSSSSGGGSCHHHHTTTSSBSTHHHHHHHHHHHHHHHHSSSS
T ss_pred             cccccccccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999997642211  1223456788999999998 78899999999999999999999999


Q ss_pred             cccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          170 IWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      |.....      ......................           ......+.+++.+||+.||++|||++|
T Consensus       199 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~li~~~l~~~p~~R~~~~~  253 (260)
T PF00069_consen  199 FEESNS------DDQLEIIEKILKRPLPSSSQQS-----------REKSEELRDLIKKMLSKDPEQRPSAEE  253 (260)
T ss_dssp             STTSSH------HHHHHHHHHHHHTHHHHHTTSH-----------TTSHHHHHHHHHHHSSSSGGGSTTHHH
T ss_pred             cccccc------hhhhhhhhhccccccccccccc-----------chhHHHHHHHHHHHccCChhHCcCHHH
Confidence            965200      0011111111110000000000           011267999999999999999999753

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=100.00  E-value=2.3e-34  Score=231.92  Aligned_cols=195  Identities=21%  Similarity=0.237  Sum_probs=157.1

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ..+.+.+|++++++++||||+++++++..++..++||||+++++|.+++.....    ....++.+++.||.|||   +.
T Consensus        44 ~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~l~~~~~~~~~~qil~~l~~lH---~~  120 (290)
T cd05580          44 QVEHVLNEKRILQSIRHPFLVNLYGSFQDDSNLYLVMEYVPGGELFSHLRKSGRFPEPVARFYAAQVVLALEYLH---SL  120 (290)
T ss_pred             HHHHHHHHHHHHHhCCCCCccceeeEEEcCCeEEEEEecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HC
Confidence            456788999999999999999999999999999999999999999999865432    45678899999999999   89


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcC
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR  167 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~  167 (241)
                      +++|+||+|+||+++.++.++|+|||.+......     .....+++.|+|||.+.+...+.++|+||||+++|+|++|+
T Consensus       121 ~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~  195 (290)
T cd05580         121 DIVYRDLKPENLLLDSDGYIKITDFGFAKRVKGR-----TYTLCGTPEYLAPEIILSKGYGKAVDWWALGILIYEMLAGY  195 (290)
T ss_pred             CEecCCCCHHHEEECCCCCEEEeeCCCccccCCC-----CCCCCCCccccChhhhcCCCCCccccHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999998765443     12345788999999998888889999999999999999999


Q ss_pred             cccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCC
Q 044022          168 IHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT  238 (241)
Q Consensus       168 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt  238 (241)
                      .||....         ..+...... .+..      .+...        .+..+.+++.+||..||++|++
T Consensus       196 ~p~~~~~---------~~~~~~~~~-~~~~------~~~~~--------~~~~l~~li~~~l~~~p~~R~~  242 (290)
T cd05580         196 PPFFDDN---------PIQIYEKIL-EGKV------RFPSF--------FSPDAKDLIRNLLQVDLTKRLG  242 (290)
T ss_pred             CCCCCCC---------HHHHHHHHh-cCCc------cCCcc--------CCHHHHHHHHHHccCCHHHccC
Confidence            9985421         111111111 1110      11111        1257889999999999999993

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>PHA03210 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=2.1e-34  Score=247.78  Aligned_cols=153  Identities=18%  Similarity=0.251  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc---------hHHHHHHHHHHHhchhhc
Q 044022           13 YGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL---------PRLKIASDIVNSLAYLHF   83 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~---------~~~~~~~~i~~~l~~lh~   83 (241)
                      ...+.+|++++++++||||+++++++...+..++|++++. ++|..++.....         ....++.|++.||.||| 
T Consensus       207 ~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH-  284 (501)
T PHA03210        207 AIQLENEILALGRLNHENILKIEEILRSEANTYMITQKYD-FDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIH-  284 (501)
T ss_pred             HHHHHHHHHHHHhCCCCCcCcEeEEEEECCeeEEEEeccc-cCHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHH-
Confidence            4568899999999999999999999999999999999995 677777644321         34578999999999999 


Q ss_pred             CCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHH
Q 044022           84 GFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL  163 (241)
Q Consensus        84 ~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~  163 (241)
                        +++|+||||||+|||++.++.+||+|||++.......... .....|+..|+|||++.+..++.++|||||||++|+|
T Consensus       285 --~~gIiHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~el  361 (501)
T PHA03210        285 --DKKLIHRDIKLENIFLNCDGKIVLGDFGTAMPFEKEREAF-DYGWVGTVATNSPEILAGDGYCEITDIWSCGLILLDM  361 (501)
T ss_pred             --hCCeecCCCCHHHEEECCCCCEEEEeCCCceecCcccccc-cccccCCcCCCCchhhcCCCCCcHHHHHHHHHHHHHH
Confidence              8999999999999999999999999999997664432211 1234689999999999988999999999999999999


Q ss_pred             HhcCccc
Q 044022          164 LAGRIHI  170 (241)
Q Consensus       164 ~~g~~p~  170 (241)
                      ++|..++
T Consensus       362 l~~~~~p  368 (501)
T PHA03210        362 LSHDFCP  368 (501)
T ss_pred             HHCCCCC
Confidence            9987543

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=100.00  E-value=3.4e-34  Score=227.93  Aligned_cols=203  Identities=19%  Similarity=0.206  Sum_probs=154.5

Q ss_pred             HHHHHHHHHHHHhcCCCcccceeeeeeeC--CcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCC
Q 044022           13 YGSCINNITYAAQMSHNHILKRIGCCLQT--PIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~--~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      .+.+.+|++++++++||||+++++++...  ...++++||+++++|.+++....    .....++.+++.||.|||   +
T Consensus        48 ~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~l~~~l~~lH---~  124 (265)
T cd06652          48 VNALECEIQLLKNLLHERIVQYYGCLRDPMERTLSIFMEHMPGGSIKDQLKSYGALTENVTRKYTRQILEGVSYLH---S  124 (265)
T ss_pred             HHHHHHHHHHHHhcCCCCeeeEEeEeccCCCceEEEEEEecCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---h
Confidence            45788899999999999999999988763  46789999999999999986542    246788999999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcce-eecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHI-TTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~-~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~  165 (241)
                      .+++|+||+|+||+++.++.++|+|||.+.......... ......++..|+|||++.+..++.++|+||||+++|++++
T Consensus       125 ~~i~H~dl~p~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~  204 (265)
T cd06652         125 NMIVHRDIKGANILRDSVGNVKLGDFGASKRLQTICLSGTGMKSVTGTPYWMSPEVISGEGYGRKADIWSVGCTVVEMLT  204 (265)
T ss_pred             CCEecCCCCHHHEEecCCCCEEECcCccccccccccccccccccCCCCccccChhhhcCCCCCcchhHHHHHHHHHHHhh
Confidence            999999999999999999999999999887543221111 1122357888999999988888999999999999999999


Q ss_pred             cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          166 GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       166 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      |+.||....         .............     .+...        ...+..+.+++.+||. +|++|||++|
T Consensus       205 g~~p~~~~~---------~~~~~~~~~~~~~-----~~~~~--------~~~~~~~~~~i~~~l~-~p~~Rp~~~~  257 (265)
T cd06652         205 EKPPWAEFE---------AMAAIFKIATQPT-----NPVLP--------PHVSDHCRDFLKRIFV-EAKLRPSADE  257 (265)
T ss_pred             CCCCCCccc---------hHHHHHHHhcCCC-----CCCCc--------hhhCHHHHHHHHHHhc-ChhhCCCHHH
Confidence            999985411         0011111111110     11111        1233568899999994 9999999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=100.00  E-value=9.1e-35  Score=234.26  Aligned_cols=154  Identities=19%  Similarity=0.240  Sum_probs=129.4

Q ss_pred             HHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc-----hHHHHHHHHHHHhchhhcCCCC
Q 044022           13 YGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL-----PRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-----~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ...+.+|++++++++|+||+++++++...+..++||||+. ++|.+++.....     ....++.+++.||.|||   +.
T Consensus        47 ~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH---~~  122 (291)
T cd07844          47 PFTAIREASLLKDLKHANIVTLHDIIHTKKTLTLVFEYLD-TDLKQYMDDCGGGLSMHNVRLFLFQLLRGLAYCH---QR  122 (291)
T ss_pred             chhHHHHHHHHhhCCCcceeeEEEEEecCCeEEEEEecCC-CCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---hC
Confidence            3457789999999999999999999999999999999997 599988765321     45678899999999999   89


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc-cCCCcchhhHHHHHHHHHHHhc
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI-CVLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      +++|+||+|+||+++.++.++|+|||.+.........  .....++..|+|||++.+ ..++.++||||+|+++|+|++|
T Consensus       123 ~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~--~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~il~~l~~g  200 (291)
T cd07844         123 RVLHRDLKPQNLLISERGELKLADFGLARAKSVPSKT--YSNEVVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATG  200 (291)
T ss_pred             CeecccCCHHHEEEcCCCCEEECccccccccCCCCcc--ccccccccccCCcHHhhcCcccCcHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999998654322111  112245778999999875 4578899999999999999999


Q ss_pred             Cccccc
Q 044022          167 RIHIWD  172 (241)
Q Consensus       167 ~~p~~~  172 (241)
                      +.||..
T Consensus       201 ~~~~~~  206 (291)
T cd07844         201 RPLFPG  206 (291)
T ss_pred             CCCCCC
Confidence            999954

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=100.00  E-value=2e-34  Score=231.83  Aligned_cols=153  Identities=22%  Similarity=0.323  Sum_probs=126.7

Q ss_pred             HHHHHHHHHHHHhc---CCCcccceeeeeeeC-----CcceEEEEecCCCCHHHhhcCCC------chHHHHHHHHHHHh
Q 044022           13 YGSCINNITYAAQM---SHNHILKRIGCCLQT-----PIPILVFQSVEYGTLRDCIFGAP------LPRLKIASDIVNSL   78 (241)
Q Consensus        13 ~~~~~~e~~~l~~l---~h~~iv~~~~~~~~~-----~~~~lv~e~~~~~sL~~~l~~~~------~~~~~~~~~i~~~l   78 (241)
                      ..++.+|+++++.+   +||||+++++++...     ...++++|++. ++|.+++....      .....++.|++.||
T Consensus        43 ~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al  121 (288)
T cd07863          43 PLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRETKVTLVFEHVD-QDLRTYLDKVPPPGLPAETIKDLMRQFLRGL  121 (288)
T ss_pred             chHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCceEEEEEcccc-cCHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence            34566788877766   699999999988642     35799999997 58988876532      14577899999999


Q ss_pred             chhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHH
Q 044022           79 AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGA  158 (241)
Q Consensus        79 ~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~  158 (241)
                      .|||   +.+++|+||||+||+++.++.++|+|||.+........   .....++..|+|||++.+..++.++||||+|+
T Consensus       122 ~~lH---~~~ivH~dikp~Nili~~~~~~kl~dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~  195 (288)
T cd07863         122 DFLH---ANCIVHRDLKPENILVTSGGQVKLADFGLARIYSCQMA---LTPVVVTLWYRAPEVLLQSTYATPVDMWSVGC  195 (288)
T ss_pred             HHHH---hCCeecCCCCHHHEEECCCCCEEECccCccccccCccc---CCCccccccccCchHhhCCCCCCcchhhhHHH
Confidence            9999   89999999999999999999999999999876543221   12345788999999998888999999999999


Q ss_pred             HHHHHHhcCccccc
Q 044022          159 FLFELLAGRIHIWD  172 (241)
Q Consensus       159 ~~~~~~~g~~p~~~  172 (241)
                      ++|+|++|++||..
T Consensus       196 ~l~~l~~g~~~f~~  209 (288)
T cd07863         196 IFAEMFRRKPLFCG  209 (288)
T ss_pred             HHHHHHhCCcCcCC
Confidence            99999999999854

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=100.00  E-value=4.4e-34  Score=226.88  Aligned_cols=208  Identities=21%  Similarity=0.321  Sum_probs=160.6

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ...+.+.+|+++++.++|+||+++++.+...+..++|+||+++++|.+++.....    ....++.+++.|+.|||   +
T Consensus        41 ~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh---~  117 (264)
T cd06626          41 KTIKEIADEMKVLELLKHPNLVKYYGVEVHREKVYIFMEYCSGGTLEELLEHGRILDEHVIRVYTLQLLEGLAYLH---S  117 (264)
T ss_pred             HHHHHHHHHHHHHHhCCCCChhheeeeEecCCEEEEEEecCCCCcHHHHHhhcCCCChHHHHHHHHHHHHHHHHHH---H
Confidence            3567889999999999999999999999999999999999999999999876522    45678999999999999   9


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCccee--ecccccCCCccCcccccccC---CCcchhhHHHHHHHH
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHIT--TDRVIGTRGYSAPEYISICV---LNEKSNVFSFGAFLF  161 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~--~~~~~~~~~~~aPE~~~~~~---~~~~~Di~s~G~~~~  161 (241)
                      .+++|+||+|+||+++.++.++|+|||.+...........  .....++..|+|||++.+..   .+.++||||||+++|
T Consensus       118 ~~i~H~dl~~~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~  197 (264)
T cd06626         118 HGIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEEVQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVL  197 (264)
T ss_pred             CCcccCCCCHHHEEECCCCCEEEcccccccccCCCCCcccccccCCcCCcCccChhhccCCCCCCCCcccchHHHHHHHH
Confidence            9999999999999999999999999999876644322111  11235678899999998766   789999999999999


Q ss_pred             HHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          162 ELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       162 ~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ++++|+.||......        ....... .....     +.+...      ...+..+.+++.+||+.+|.+|||++|
T Consensus       198 ~l~~g~~pf~~~~~~--------~~~~~~~-~~~~~-----~~~~~~------~~~~~~~~~li~~~l~~~p~~R~~~~~  257 (264)
T cd06626         198 EMATGKRPWSELDNE--------FQIMFHV-GAGHK-----PPIPDS------LQLSPEGKDFLDRCLESDPKKRPTASE  257 (264)
T ss_pred             HHHhCCCCccCCcch--------HHHHHHH-hcCCC-----CCCCcc------cccCHHHHHHHHHHccCCcccCCCHHH
Confidence            999999999542110        0001110 11111     111111      012356789999999999999999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=100.00  E-value=4.1e-34  Score=232.32  Aligned_cols=198  Identities=23%  Similarity=0.374  Sum_probs=153.4

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC--C---chHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA--P---LPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~--~---~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ..+++.+|+++++.++|||++++.+++...+..++|+||+. |+|.+.+...  .   .....++.+++.||.|||   +
T Consensus        58 ~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~-g~l~~~~~~~~~~l~~~~~~~~~~ql~~~L~~LH---~  133 (307)
T cd06607          58 KWQDIIKEVRFLQQLRHPNTIEYKGCYLREHTAWLVMEYCL-GSASDILEVHKKPLQEVEIAAICHGALQGLAYLH---S  133 (307)
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEEEEEEeCCeEEEEHHhhC-CCHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            44678899999999999999999999999999999999997 6777766432  1   245678999999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccc---ccCCCcchhhHHHHHHHHHH
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYIS---ICVLNEKSNVFSFGAFLFEL  163 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~---~~~~~~~~Di~s~G~~~~~~  163 (241)
                      .+++|+||+|+||+++.++.++|+|||.+......      ....++..|+|||++.   ...++.++||||||+++|++
T Consensus       134 ~~i~H~dl~p~nIl~~~~~~~kL~dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~s~G~il~el  207 (307)
T cd06607         134 HERIHRDIKAGNILLTEPGTVKLADFGSASLVSPA------NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIEL  207 (307)
T ss_pred             CCceecCCCcccEEECCCCCEEEeecCcceecCCC------CCccCCccccCceeeeccCCCCCCcccchHHHHHHHHHH
Confidence            99999999999999999999999999988654332      2235778899999874   35678899999999999999


Q ss_pred             HhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          164 LAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       164 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ++|..||.....         ...........      .+...       ....+..+.+++.+||+.||++|||+.+
T Consensus       208 ~tg~~p~~~~~~---------~~~~~~~~~~~------~~~~~-------~~~~~~~~~~li~~~l~~~p~~Rp~~~~  263 (307)
T cd06607         208 AERKPPLFNMNA---------MSALYHIAQND------SPTLS-------SNDWSDYFRNFVDSCLQKIPQDRPSSEE  263 (307)
T ss_pred             HcCCCCCCCccH---------HHHHHHHhcCC------CCCCC-------chhhCHHHHHHHHHHhcCChhhCcCHHH
Confidence            999999854211         11111111000      00000       1134467899999999999999999753

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=100.00  E-value=3e-34  Score=230.73  Aligned_cols=204  Identities=21%  Similarity=0.304  Sum_probs=159.9

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC--c---hHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP--L---PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~--~---~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ....+.+|++++++++|+|++++++.+...+..++++||+++++|.+++....  .   .+..++.+++.||.|||   +
T Consensus        58 ~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~i~~~i~~~L~~lH---~  134 (286)
T cd06614          58 NKELIINEILIMKDCKHPNIVDYYDSYLVGDELWVVMEYMDGGSLTDIITQNFVRMNEPQIAYVCREVLQGLEYLH---S  134 (286)
T ss_pred             hHHHHHHHHHHHHHCCCCCeeEEEEEEEECCEEEEEEeccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH---h
Confidence            46678899999999999999999999999999999999999999999987653  2   46778999999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhc
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      .+++|+||+|+||+++.++.++|+|||.+........  ......++..|+|||.+.+..++.++|+||||+++|++++|
T Consensus       135 ~gi~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~--~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slGvil~~l~~g  212 (286)
T cd06614         135 QNVIHRDIKSDNILLSKDGSVKLADFGFAAQLTKEKS--KRNSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEG  212 (286)
T ss_pred             CCeeeCCCChhhEEEcCCCCEEECccchhhhhccchh--hhccccCCcccCCHhHhcCCCCCCccccHHHHHHHHHHHhC
Confidence            9999999999999999999999999998765433221  11233567889999999888889999999999999999999


Q ss_pred             CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          167 RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +.||.....         ........ .........           ....+..+.+++.+||+.+|.+|||++|
T Consensus       213 ~~p~~~~~~---------~~~~~~~~-~~~~~~~~~-----------~~~~~~~l~~li~~~l~~~p~~Rpt~~~  266 (286)
T cd06614         213 EPPYLREPP---------LRALFLIT-TKGIPPLKN-----------PEKWSPEFKDFLNKCLVKDPEKRPSAEE  266 (286)
T ss_pred             CCCCCCCCH---------HHHHHHHH-hcCCCCCcc-----------hhhCCHHHHHHHHHHhccChhhCcCHHH
Confidence            999854111         01111111 111111110           0113357889999999999999999853

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=100.00  E-value=1.7e-34  Score=237.04  Aligned_cols=156  Identities=18%  Similarity=0.201  Sum_probs=133.3

Q ss_pred             HHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC--Cc---hHHHHHHHHHHHhchhhcCCCC
Q 044022           13 YGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA--PL---PRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~--~~---~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ...+.+|+.++..++|+||+++++++...+..++||||+++|+|.+++...  ..   ....++.|++.||.|||   +.
T Consensus        45 ~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~~~~qi~~al~~lH---~~  121 (332)
T cd05623          45 TACFREERDVLVNGDNQWITTLHYAFQDENNLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVIAIDSVH---QL  121 (332)
T ss_pred             HHHHHHHHHHHhhCCCCCEeeEEEEEecCCEEEEEEeccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HC
Confidence            445788999999999999999999999999999999999999999998653  11   35678899999999999   99


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc-----cCCCcchhhHHHHHHHHH
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI-----CVLNEKSNVFSFGAFLFE  162 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-----~~~~~~~Di~s~G~~~~~  162 (241)
                      +++||||||+|||++.++.++|+|||++......... ......|++.|+|||++..     ..++.++||||||+++|+
T Consensus       122 ~iiHrDlkp~Nili~~~~~~kL~DfG~a~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~e  200 (332)
T cd05623         122 HYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTV-QSSVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYE  200 (332)
T ss_pred             CeEecCCCHHHEEECCCCCEEEeecchheecccCCcc-eecccccCccccCHHHHhccccCCCCCCCcCCEEeeHHHHHH
Confidence            9999999999999999999999999998754332221 1233468999999999863     457889999999999999


Q ss_pred             HHhcCccccc
Q 044022          163 LLAGRIHIWD  172 (241)
Q Consensus       163 ~~~g~~p~~~  172 (241)
                      |++|+.||..
T Consensus       201 ll~g~~Pf~~  210 (332)
T cd05623         201 MLYGETPFYA  210 (332)
T ss_pred             HhcCCCCCCC
Confidence            9999999964

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=100.00  E-value=4.8e-36  Score=230.69  Aligned_cols=202  Identities=24%  Similarity=0.337  Sum_probs=164.1

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC--Cc---hHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA--PL---PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~--~~---~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ..++...|+.++++++.|++|++||.+.....+|+|||||-.||+.+.++..  +.   .+..++.+-+.||.|||   .
T Consensus        71 DLQEIIKEISIMQQC~S~yVVKYYGSYFK~sDLWIVMEYCGAGSiSDI~R~R~K~L~E~EIs~iL~~TLKGL~YLH---~  147 (502)
T KOG0574|consen   71 DLQEIIKEISIMQQCKSKYVVKYYGSYFKHSDLWIVMEYCGAGSISDIMRARRKPLSEQEISAVLRDTLKGLQYLH---D  147 (502)
T ss_pred             hHHHHHHHHHHHHHcCCchhhhhhhhhccCCceEeehhhcCCCcHHHHHHHhcCCccHHHHHHHHHHHHhHHHHHH---H
Confidence            5678899999999999999999999998888999999999999999987644  22   35678889999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhc
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      ..-+|||||+-|||++.+|..|++|||++..++..-  ...+++.||+.|||||++..-.|+.++||||+|+...||..|
T Consensus       148 ~~KIHRDIKAGNILLNT~G~AKLADFGVAGQLTDTM--AKRNTVIGTPFWMAPEVI~EIGY~~~ADIWSLGITaIEMAEG  225 (502)
T KOG0574|consen  148 LKKIHRDIKAGNILLNTDGIAKLADFGVAGQLTDTM--AKRNTVIGTPFWMAPEVIEEIGYDTKADIWSLGITAIEMAEG  225 (502)
T ss_pred             HHHHHhhcccccEEEcccchhhhhhccccchhhhhH--HhhCccccCcccccHHHHHHhccchhhhHhhhcchhhhhhcC
Confidence            889999999999999999999999999998765532  234678999999999999999999999999999999999999


Q ss_pred             CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCC
Q 044022          167 RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM  239 (241)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~  239 (241)
                      ++||.+.- ..                 ..+..++... ++.+  ..++.-+..+.+++++||.++|++|.||
T Consensus       226 ~PPYsDIH-PM-----------------RAIFMIPT~P-PPTF--~KPE~WS~~F~DFi~~CLiK~PE~R~TA  277 (502)
T KOG0574|consen  226 RPPYSDIH-PM-----------------RAIFMIPTKP-PPTF--KKPEEWSSEFNDFIRSCLIKKPEERKTA  277 (502)
T ss_pred             CCCccccc-cc-----------------ceeEeccCCC-CCCC--CChHhhhhHHHHHHHHHhcCCHHHHHHH
Confidence            99996621 10                 0011111100 0111  1123455679999999999999999886

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=100.00  E-value=5.4e-34  Score=227.59  Aligned_cols=205  Identities=20%  Similarity=0.320  Sum_probs=153.9

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCC------cceEEEEecCCCCHHHhhcCC-----C-----chHHHHHHHH
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTP------IPILVFQSVEYGTLRDCIFGA-----P-----LPRLKIASDI   74 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~------~~~lv~e~~~~~sL~~~l~~~-----~-----~~~~~~~~~i   74 (241)
                      ...+++.+|++++++++||||+++++++....      ..+++++|+.+|+|.+++...     .     .....++.++
T Consensus        43 ~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i  122 (273)
T cd05074          43 SDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRLPIPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDI  122 (273)
T ss_pred             HHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCcccceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHH
Confidence            34667889999999999999999999886532      247889999999998876321     1     1357899999


Q ss_pred             HHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhH
Q 044022           75 VNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVF  154 (241)
Q Consensus        75 ~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~  154 (241)
                      +.|++|||   +.+++|+||||+||+++.++.++++|||.+................++..|++||.+....++.++|||
T Consensus       123 ~~~l~~lH---~~~i~H~dikp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~sDi~  199 (273)
T cd05074         123 ASGMEYLS---SKNFIHRDLAARNCMLNENMTVCVADFGLSKKIYSGDYYRQGCASKLPVKWLALESLADNVYTTHSDVW  199 (273)
T ss_pred             HHHHHHHH---hCCEeecccchhhEEEcCCCCEEECcccccccccCCcceecCCCccCchhhcCHhHHhcCccchhhhhH
Confidence            99999999   899999999999999999999999999998765433222122223456779999999888889999999


Q ss_pred             HHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCC
Q 044022          155 SFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSP  233 (241)
Q Consensus       155 s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p  233 (241)
                      |||+++|++++ |+.||.....         .+...... ......     ...        ..+..+.+++.+||+.+|
T Consensus       200 slG~il~el~~~g~~p~~~~~~---------~~~~~~~~-~~~~~~-----~~~--------~~~~~~~~l~~~~l~~~p  256 (273)
T cd05074         200 AFGVTMWEIMTRGQTPYAGVEN---------SEIYNYLI-KGNRLK-----QPP--------DCLEDVYELMCQCWSPEP  256 (273)
T ss_pred             HHHHHHHHHhhCCCCCCCCCCH---------HHHHHHHH-cCCcCC-----CCC--------CCCHHHHHHHHHHcCCCh
Confidence            99999999999 8888854211         11111111 111100     011        123578999999999999


Q ss_pred             CCCCCCCC
Q 044022          234 EDRPTMVD  241 (241)
Q Consensus       234 ~~Rpt~~e  241 (241)
                      ++|||+.|
T Consensus       257 ~~Rps~~~  264 (273)
T cd05074         257 KCRPSFQH  264 (273)
T ss_pred             hhCcCHHH
Confidence            99999853

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=9.3e-36  Score=246.42  Aligned_cols=198  Identities=23%  Similarity=0.382  Sum_probs=158.8

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC--Cc---hHHHHHHHHHHHhchhhcCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA--PL---PRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~--~~---~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ...++++.||+.|++++|||++.+.|+|..+...|+|||||- ||-.|.+.-+  +.   .+..|..+.+.||+|||   
T Consensus        68 EKWqDIlKEVrFL~~l~HPntieYkgCyLre~TaWLVMEYCl-GSAsDlleVhkKplqEvEIAAi~~gaL~gLaYLH---  143 (948)
T KOG0577|consen   68 EKWQDILKEVRFLRQLRHPNTIEYKGCYLREHTAWLVMEYCL-GSASDLLEVHKKPLQEVEIAAITHGALQGLAYLH---  143 (948)
T ss_pred             HHHHHHHHHHHHHHhccCCCcccccceeeccchHHHHHHHHh-ccHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH---
Confidence            457778999999999999999999999999999999999996 6888876433  33   35677889999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc---cCCCcchhhHHHHHHHHH
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI---CVLNEKSNVFSFGAFLFE  162 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~---~~~~~~~Di~s~G~~~~~  162 (241)
                      +.+.+|||||+-|||++..|.||++|||.+.....      .++.+|||+|||||++.-   +.|+-++||||+|+...|
T Consensus       144 S~~~IHRDiKAGNILLse~g~VKLaDFGSAsi~~P------AnsFvGTPywMAPEVILAMDEGqYdgkvDvWSLGITCIE  217 (948)
T KOG0577|consen  144 SHNRIHRDIKAGNILLSEPGLVKLADFGSASIMAP------ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIE  217 (948)
T ss_pred             HhhHHhhhccccceEecCCCeeeeccccchhhcCc------hhcccCCccccchhHheeccccccCCccceeeccchhhh
Confidence            99999999999999999999999999998865433      256789999999999864   579999999999999999


Q ss_pred             HHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          163 LLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       163 ~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                      +..+++|+..++-         ...+.....+.      .|.       ....+-+..+++|+..||.+=|.+|||.+
T Consensus       218 LAERkPPlFnMNA---------MSALYHIAQNe------sPt-------Lqs~eWS~~F~~Fvd~CLqKipqeRptse  273 (948)
T KOG0577|consen  218 LAERKPPLFNMNA---------MSALYHIAQNE------SPT-------LQSNEWSDYFRNFVDSCLQKIPQERPTSE  273 (948)
T ss_pred             hhhcCCCccCchH---------HHHHHHHHhcC------CCC-------CCCchhHHHHHHHHHHHHhhCcccCCcHH
Confidence            9999999866311         01111111111      111       11124456799999999999999999975

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=100.00  E-value=3.2e-35  Score=236.06  Aligned_cols=154  Identities=18%  Similarity=0.243  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHHHhchhhcCCCC
Q 044022           13 YGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ...+.+|++++++++|+||+++++++...+..++|+||+. ++|.+++....     .....++.||+.||.|||   ++
T Consensus        43 ~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH---~~  118 (284)
T cd07839          43 PSSALREICLLKELKHKNIVRLYDVLHSDKKLTLVFEYCD-QDLKKYFDSCNGDIDPEIVKSFMFQLLKGLAFCH---SH  118 (284)
T ss_pred             ccchhHHHHHHHhcCCCCeeeHHHHhccCCceEEEEecCC-CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HC
Confidence            4567889999999999999999999999999999999997 58888765421     146789999999999999   89


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc-CCCcchhhHHHHHHHHHHHhc
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-VLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      +++|+||+|+||+++.++.++|+|||.+..........  ....++..|+|||.+.+. .++.++||||||+++|+|++|
T Consensus       119 ~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~--~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~tg  196 (284)
T cd07839         119 NVLHRDLKPQNLLINKNGELKLADFGLARAFGIPVRCY--SAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANA  196 (284)
T ss_pred             CEecCCCCHHHEEEcCCCcEEECccchhhccCCCCCCc--CCCccccCCcChHHHhCCcccCcHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999987554322111  223567889999988764 468999999999999999999


Q ss_pred             Cccccc
Q 044022          167 RIHIWD  172 (241)
Q Consensus       167 ~~p~~~  172 (241)
                      ..|+..
T Consensus       197 ~~p~~~  202 (284)
T cd07839         197 GRPLFP  202 (284)
T ss_pred             CCCCcC
Confidence            988754

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=100.00  E-value=1.9e-34  Score=228.53  Aligned_cols=202  Identities=19%  Similarity=0.225  Sum_probs=160.8

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC-Cc---hHHHHHHHHHHHhchhhcCCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA-PL---PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~-~~---~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ...+.+.+|++++++++||||+++++++..+...++|+||+.+++|..++... ..   ....++.+++.||.|||   +
T Consensus        42 ~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~~i~~~l~~lh---~  118 (258)
T cd05578          42 GSVRNVLNERRILQELNHPFLVNLWYSFQDEENMYLVVDLLLGGDLRYHLSQKVKFSEEQVKFWICEIVLALEYLH---S  118 (258)
T ss_pred             hHHHHHHHHHHHHHhCCCCChHHHHHhhcCCCeEEEEEeCCCCCCHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHH---h
Confidence            35678999999999999999999999999999999999999999999998665 22   46788999999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhc
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      .+++|+||+|+||+++.++.++|+|||.+........   .....++..|+|||.+....++.++|+||||+++|++++|
T Consensus       119 ~~i~h~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~---~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~g  195 (258)
T cd05578         119 KGIIHRDIKPDNILLDEQGHVHITDFNIATKVTPDTL---TTSTSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRG  195 (258)
T ss_pred             CCeeccCCCHHHeEEcCCCCEEEeecccccccCCCcc---ccccCCChhhcCHHHHcccCCCCcccchhhHHHHHHHHhC
Confidence            9999999999999999999999999999876544321   1234577889999999888889999999999999999999


Q ss_pred             CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCC
Q 044022          167 RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM  239 (241)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~  239 (241)
                      ..||......      ........ ...      .......        ..+..+.+++.+||..||.+||++
T Consensus       196 ~~p~~~~~~~------~~~~~~~~-~~~------~~~~~~~--------~~~~~~~~~i~~~l~~~p~~R~~~  247 (258)
T cd05578         196 KRPYRGHSRT------IRDQIRAK-QET------ADVLYPA--------TWSTEAIDAINKLLERDPQKRLGD  247 (258)
T ss_pred             CCCCCCCCcc------HHHHHHHH-hcc------ccccCcc--------cCcHHHHHHHHHHccCChhHcCCc
Confidence            9999653211      01111111 110      0011111        122678899999999999999998

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=100.00  E-value=6.1e-34  Score=229.51  Aligned_cols=165  Identities=18%  Similarity=0.209  Sum_probs=133.5

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHH
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVN   76 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~   76 (241)
                      |.+..+........+.+|+++++.++|+||+++++++..++..++|+||+. ++|.+++....     .....++.+++.
T Consensus        36 K~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~  114 (291)
T cd07870          36 KVISMKTEEGVPFTAIREASLLKGLKHANIVLLHDIIHTKETLTFVFEYMH-TDLAQYMIQHPGGLHPYNVRLFMFQLLR  114 (291)
T ss_pred             EEecccCcCCCcHHHHHHHHHHHhcCCCCEeEEEEEEecCCeEEEEEeccc-CCHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence            444433333444567899999999999999999999999889999999996 68877664321     245678899999


Q ss_pred             HhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc-CCCcchhhHH
Q 044022           77 SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-VLNEKSNVFS  155 (241)
Q Consensus        77 ~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s  155 (241)
                      ||.|||   +.+++|+||||+||+++.++.++|+|||.+.........  .....++..|+|||.+.+. .++.++|+||
T Consensus       115 ~L~~lH---~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~s  189 (291)
T cd07870         115 GLAYIH---GQHILHRDLKPQNLLISYLGELKLADFGLARAKSIPSQT--YSSEVVTLWYRPPDVLLGATDYSSALDIWG  189 (291)
T ss_pred             HHHHHH---hCCcccCCCChHHEEEcCCCcEEEeccccccccCCCCCC--CCCccccccccCCceeecCCCCCcHHHHHH
Confidence            999999   899999999999999999999999999988754332211  1223467889999998753 5788999999


Q ss_pred             HHHHHHHHHhcCccccc
Q 044022          156 FGAFLFELLAGRIHIWD  172 (241)
Q Consensus       156 ~G~~~~~~~~g~~p~~~  172 (241)
                      ||+++|++++|..||..
T Consensus       190 lG~~l~~l~~g~~~f~~  206 (291)
T cd07870         190 AGCIFIEMLQGQPAFPG  206 (291)
T ss_pred             HHHHHHHHHhCCCCCCC
Confidence            99999999999999964

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=100.00  E-value=4.6e-34  Score=227.33  Aligned_cols=208  Identities=20%  Similarity=0.286  Sum_probs=159.6

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ..+.+.+|++++++++|+||+++++++...+..++|+||+++++|.+++....    .....++.+++.||.|||   +.
T Consensus        46 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~ql~~al~~LH---~~  122 (268)
T cd06630          46 VVEALRKEIRLMARLNHPHIIRMLGATCEDSHFNLFVEWMAGGSVSHLLSKYGAFKEAVIINYTEQLLRGLSYLH---EN  122 (268)
T ss_pred             HHHHHHHHHHHHHHcCCCceehhhceeccCCeEEEEEeccCCCcHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH---hC
Confidence            45778999999999999999999999999999999999999999999986542    245778999999999999   99


Q ss_pred             CceeccCCCCCeeecCCC-CeEEeeccCceecCCCCcc--eeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHH
Q 044022           88 PIVLRNFKTQNILFNEEN-VAKWFDFLLSISIPEGETH--ITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~-~~~l~df~~~~~~~~~~~~--~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~  164 (241)
                      +++|+||+|+||+++.++ .++|+|||.+.........  .......++..|+|||.+.+..++.++|+||+|+++++++
T Consensus       123 ~i~H~~i~~~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~  202 (268)
T cd06630         123 QIIHRDVKGANLLIDSTGQRLRIADFGAAARLAAKGTGAGEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMA  202 (268)
T ss_pred             CeecCCCCHHHEEEcCCCCEEEEcccccccccccccccCCccccccccccceeCHhHhccCCCCcccchHHHHHHHHHHH
Confidence            999999999999998776 5899999998765443111  1112345788899999998888899999999999999999


Q ss_pred             hcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          165 AGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       165 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +|..||......      .............     ..+...        ...+..+.+++.+||..+|++|||+.|
T Consensus       203 ~g~~p~~~~~~~------~~~~~~~~~~~~~-----~~~~~~--------~~~~~~~~~~i~~~l~~~p~~R~~~~~  260 (268)
T cd06630         203 TAKPPWNAEKHS------NHLALIFKIASAT-----TAPSIP--------EHLSPGLRDVTLRCLELQPEDRPPSRE  260 (268)
T ss_pred             hCCCCCCCCCCc------chHHHHHHHhccC-----CCCCCc--------hhhCHHHHHHHHHHcCCCcccCcCHHH
Confidence            999998542111      0011111100000     001111        133467889999999999999999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=100.00  E-value=2.4e-34  Score=228.26  Aligned_cols=204  Identities=23%  Similarity=0.256  Sum_probs=159.9

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      .....+.+|++++++++|+||+++++.+...+..++++||+++++|.+++....    ..+..++.|++.||+|||   +
T Consensus        35 ~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~L~~lH---~  111 (265)
T cd05579          35 NQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYLPGGDLASLLENVGSLDEDVARIYIAEIVLALEYLH---S  111 (265)
T ss_pred             hHHHHHHHHHHHHHhCCCcchhHHHHheecCcEEEEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            456678899999999999999999999999999999999999999999986532    246789999999999999   9


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCc------ceeecccccCCCccCcccccccCCCcchhhHHHHHHH
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGET------HITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFL  160 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~------~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~  160 (241)
                      .+++|+||+|+||+++.++.++|+|||++........      ........++..|+|||.......+.++|+||||+++
T Consensus       112 ~~i~H~di~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~~~  191 (265)
T cd05579         112 NGIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTPDYIAPEVILGQGHSKTVDWWSLGCIL  191 (265)
T ss_pred             cCeecCCCCHHHeEEcCCCCEEEEecccchhcccCcccccccccccccCcccCccccCHHHhcCCCCCcchhhHHHHHHH
Confidence            9999999999999999999999999998765433211      0122334577889999999888889999999999999


Q ss_pred             HHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCC
Q 044022          161 FELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM  239 (241)
Q Consensus       161 ~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~  239 (241)
                      |++++|..||....         ..+....... +... .+     ...      ..+..+.+++.+||+.+|++|||+
T Consensus       192 ~~l~~g~~p~~~~~---------~~~~~~~~~~-~~~~-~~-----~~~------~~~~~~~~~i~~~l~~~p~~Rpt~  248 (265)
T cd05579         192 YEFLVGIPPFHGET---------PEEIFQNILN-GKIE-WP-----EDV------EVSDEAIDLISKLLVPDPEKRLGA  248 (265)
T ss_pred             HHHHhCCCCCCCCC---------HHHHHHHHhc-CCcC-CC-----ccc------cCCHHHHHHHHHHhcCCHhhcCCC
Confidence            99999999995421         1111111111 1110 00     000      013678899999999999999998

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.3e-34  Score=228.73  Aligned_cols=204  Identities=24%  Similarity=0.307  Sum_probs=154.7

Q ss_pred             cHHHHHHHHHHHHhc-CCCcccceeeeeeeCC------cceEEEEecCCCCHHHhhcCCC--------chHHHHHHHHHH
Q 044022           12 TYGSCINNITYAAQM-SHNHILKRIGCCLQTP------IPILVFQSVEYGTLRDCIFGAP--------LPRLKIASDIVN   76 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~------~~~lv~e~~~~~sL~~~l~~~~--------~~~~~~~~~i~~   76 (241)
                      ..+++.+|+.+++++ .|+||+++++++....      ..++|+||+++++|.+++....        .....++.|++.
T Consensus        45 ~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~  124 (275)
T cd06608          45 EEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGNDDQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLR  124 (275)
T ss_pred             hHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCcceEEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Confidence            356789999999999 7999999999997654      4899999999999998875421        135678999999


Q ss_pred             HhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc-----cCCCcch
Q 044022           77 SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI-----CVLNEKS  151 (241)
Q Consensus        77 ~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-----~~~~~~~  151 (241)
                      ||.|||   +.+++|+||+|+||+++.++.++|+|||.+.........  .....++..|+|||++..     ..++.++
T Consensus       125 al~~lH---~~~i~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~  199 (275)
T cd06608         125 GLAYLH---ENKVIHRDIKGQNILLTKNAEVKLVDFGVSAQLDSTLGR--RNTFIGTPYWMAPEVIACDEQPDASYDARS  199 (275)
T ss_pred             HHHHHh---cCCcccCCCCHHHEEEccCCeEEECCCccceecccchhh--hcCccccccccCHhHhcccccccCCccccc
Confidence            999999   999999999999999999999999999998765432211  123457888999998753     2467889


Q ss_pred             hhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccC
Q 044022          152 NVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNN  231 (241)
Q Consensus       152 Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~  231 (241)
                      ||||||+++|++++|+.||.....         ........ ...     .+.+.      .....+..+.+++.+||..
T Consensus       200 Dv~slG~il~~l~~g~~p~~~~~~---------~~~~~~~~-~~~-----~~~~~------~~~~~~~~~~~li~~~l~~  258 (275)
T cd06608         200 DVWSLGITAIELADGKPPLCDMHP---------MRALFKIP-RNP-----PPTLK------SPENWSKKFNDFISECLIK  258 (275)
T ss_pred             cHHHhHHHHHHHHhCCCCccccch---------HHHHHHhh-ccC-----CCCCC------chhhcCHHHHHHHHHHhhc
Confidence            999999999999999999964211         01111111 110     01110      0113446789999999999


Q ss_pred             CCCCCCCCCC
Q 044022          232 SPEDRPTMVD  241 (241)
Q Consensus       232 ~p~~Rpt~~e  241 (241)
                      ||++|||++|
T Consensus       259 dp~~Rpt~~~  268 (275)
T cd06608         259 NYEQRPFMEE  268 (275)
T ss_pred             ChhhCcCHHH
Confidence            9999999864

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=100.00  E-value=3e-34  Score=230.74  Aligned_cols=158  Identities=22%  Similarity=0.273  Sum_probs=134.3

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ...+.+.+|++++++++|+||+++++++...+..++|+||++++.+..+.....    .....++.+++.|+.|||   +
T Consensus        42 ~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH---~  118 (288)
T cd07833          42 DVKKTALREVKVLRQLRHENIVNLKEAFRRKGRLYLVFEYVERTLLELLEASPGGLPPDAVRSYIWQLLQAIAYCH---S  118 (288)
T ss_pred             cchhHHHHHHHHHHhcCCCCeeehhheEEECCEEEEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            456788999999999999999999999999999999999999776666554432    246778999999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc-CCCcchhhHHHHHHHHHHHh
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-VLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~~~~~~~  165 (241)
                      .+++|+||+|+||+++.++.++|+|||.+......... ......++..|+|||++.+. .++.++|+||||+++|++++
T Consensus       119 ~~i~H~dl~~~ni~~~~~~~~kl~d~g~~~~~~~~~~~-~~~~~~~~~~~~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~  197 (288)
T cd07833         119 HNIIHRDIKPENILVSESGVLKLCDFGFARALRARPAS-PLTDYVATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLD  197 (288)
T ss_pred             CCeecCCCCHHHeEECCCCCEEEEeeecccccCCCccc-cccCcccccCCcCCchhcCCCCcCchhhHHHHHHHHHHHHh
Confidence            99999999999999999999999999998765544321 11234577889999999887 78899999999999999999


Q ss_pred             cCccccc
Q 044022          166 GRIHIWD  172 (241)
Q Consensus       166 g~~p~~~  172 (241)
                      |+.||..
T Consensus       198 g~~~~~~  204 (288)
T cd07833         198 GEPLFPG  204 (288)
T ss_pred             CCCCCCC
Confidence            9999854

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=100.00  E-value=9.9e-35  Score=233.04  Aligned_cols=203  Identities=22%  Similarity=0.282  Sum_probs=153.1

Q ss_pred             cHHHHHHHHHHHHhc-CCCcccceeeeeee------CCcceEEEEecCCCCHHHhhcCCC---c---hHHHHHHHHHHHh
Q 044022           12 TYGSCINNITYAAQM-SHNHILKRIGCCLQ------TPIPILVFQSVEYGTLRDCIFGAP---L---PRLKIASDIVNSL   78 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~------~~~~~lv~e~~~~~sL~~~l~~~~---~---~~~~~~~~i~~~l   78 (241)
                      ...++.+|+.+++++ +|+|++++++++..      ....+++|||+.+|+|.+++....   .   ....++.|++.|+
T Consensus        55 ~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al  134 (282)
T cd06636          55 EEEEIKLEINMLKKYSHHRNIATYYGAFIKKSPPGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGL  134 (282)
T ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEeeehhcccccCCCCEEEEEEEeCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence            346788899999999 79999999999863      346799999999999999886432   1   3567888999999


Q ss_pred             chhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccc-----ccCCCcchhh
Q 044022           79 AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYIS-----ICVLNEKSNV  153 (241)
Q Consensus        79 ~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~-----~~~~~~~~Di  153 (241)
                      .|||   +.+++|+||+|+||+++.++.++|+|||.+........  ......++..|+|||.+.     ...++.++|+
T Consensus       135 ~~LH---~~~ivH~dl~~~nili~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~l~~~~~~~~~~~~~~Dv  209 (282)
T cd06636         135 AHLH---AHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVG--RRNTFIGTPYWMAPEVIACDENPDATYDYRSDI  209 (282)
T ss_pred             HHHH---HCCcccCCCCHHHEEECCCCCEEEeeCcchhhhhcccc--CCCcccccccccCHhhcCcccCcCcCCCcccch
Confidence            9999   89999999999999999999999999999865432211  112346788999999886     3457789999


Q ss_pred             HHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCC
Q 044022          154 FSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSP  233 (241)
Q Consensus       154 ~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p  233 (241)
                      ||||+++|+|++|..||......         +...... ..     ......       ....+..+.+++.+||+.||
T Consensus       210 wslG~~l~el~~g~~p~~~~~~~---------~~~~~~~-~~-----~~~~~~-------~~~~~~~~~~li~~cl~~~p  267 (282)
T cd06636         210 WSLGITAIEMAEGAPPLCDMHPM---------RALFLIP-RN-----PPPKLK-------SKKWSKKFIDFIEGCLVKNY  267 (282)
T ss_pred             hHHHHHHHHHHhCCCCccccCHH---------hhhhhHh-hC-----CCCCCc-------ccccCHHHHHHHHHHhCCCh
Confidence            99999999999999999652111         0000000 00     000000       01233678999999999999


Q ss_pred             CCCCCCCC
Q 044022          234 EDRPTMVD  241 (241)
Q Consensus       234 ~~Rpt~~e  241 (241)
                      .+|||+.|
T Consensus       268 ~~Rp~~~e  275 (282)
T cd06636         268 LSRPSTEQ  275 (282)
T ss_pred             hhCcCHHH
Confidence            99999864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=100.00  E-value=6.7e-34  Score=226.68  Aligned_cols=203  Identities=20%  Similarity=0.335  Sum_probs=156.9

Q ss_pred             cHHHHHHHHHHHHh-cCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC-----C---chHHHHHHHHHHHhchhh
Q 044022           12 TYGSCINNITYAAQ-MSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA-----P---LPRLKIASDIVNSLAYLH   82 (241)
Q Consensus        12 ~~~~~~~e~~~l~~-l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~-----~---~~~~~~~~~i~~~l~~lh   82 (241)
                      ...++.+|+.++.+ ++||||+++++++...+..++++||+++++|.+++...     .   ...+.++.+++.|+.|||
T Consensus        51 ~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh  130 (269)
T cd08528          51 SIGDIVSEVTIIKEQLRHPNIVRYYKTFLENDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLH  130 (269)
T ss_pred             HHHHHHHHHHHHhhcCCCCCeeeEEeeEccCCeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc
Confidence            44567789988875 69999999999999999999999999999999887321     1   146788999999999999


Q ss_pred             cCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHH
Q 044022           83 FGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFE  162 (241)
Q Consensus        83 ~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~  162 (241)
                      .  ..+++|+||+|+||+++.++.++|+|||.+.......   ......++..|+|||.+.+..++.++|+||||+++|+
T Consensus       131 ~--~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~---~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~  205 (269)
T cd08528         131 K--EKRIVHRDLTPNNIMLGEDDKVTITDFGLAKQKQPES---KLTSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQ  205 (269)
T ss_pred             c--CCceeecCCCHHHEEECCCCcEEEecccceeeccccc---ccccccCcccCcChhhhcCCCCchHHHHHHHHHHHHH
Confidence            3  3689999999999999999999999999987654432   1233467888999999998889999999999999999


Q ss_pred             HHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          163 LLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       163 ~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +++|+.||....         ........ ..........            ...+..+.+++.+||+.||++|||+.|
T Consensus       206 l~~g~~p~~~~~---------~~~~~~~~-~~~~~~~~~~------------~~~~~~l~~li~~cl~~~p~~Rp~~~e  262 (269)
T cd08528         206 MCTLQPPFYSTN---------MLSLATKI-VEAVYEPLPE------------GMYSEDVTDVITSCLTPDAEARPDIIQ  262 (269)
T ss_pred             HHhCCCcccccC---------HHHHHHHH-hhccCCcCCc------------ccCCHHHHHHHHHHCCCCCccCCCHHH
Confidence            999999985421         11111111 1111111110            012357889999999999999999854

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=100.00  E-value=4.8e-34  Score=229.24  Aligned_cols=155  Identities=22%  Similarity=0.313  Sum_probs=130.3

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC------chHHHHHHHHHHHhchhhcCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP------LPRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~------~~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ....+.+|++++++++||||+++++++...+..++|+||+. ++|..++....      .....++.+++.|++|||   
T Consensus        42 ~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~-~~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lh---  117 (284)
T cd07860          42 VPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLH-QDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCH---  117 (284)
T ss_pred             cchHHHHHHHHHHhcCCCCCcchhhhcccCCcEEEEeeccc-cCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            34678899999999999999999999999999999999996 68988875432      146788999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccC-CCcchhhHHHHHHHHHHH
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICV-LNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~-~~~~~Di~s~G~~~~~~~  164 (241)
                      +.+++|+||+|+||+++.++.++++|||.+.........  .....++..|+|||.+.+.. ++.++|+||||+++|+++
T Consensus       118 ~~~i~H~~l~p~nill~~~~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~  195 (284)
T cd07860         118 SHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRT--YTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMV  195 (284)
T ss_pred             HCCeecCCCCHHHEEECCCCCEEEeeccchhhcccCccc--cccccccccccCCeEEecCCCCCcHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999998654332211  12234677899999887644 578899999999999999


Q ss_pred             hcCccccc
Q 044022          165 AGRIHIWD  172 (241)
Q Consensus       165 ~g~~p~~~  172 (241)
                      +|+.||..
T Consensus       196 tg~~p~~~  203 (284)
T cd07860         196 TRRALFPG  203 (284)
T ss_pred             HCCCCCCC
Confidence            99999854

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=100.00  E-value=3.9e-34  Score=229.84  Aligned_cols=156  Identities=21%  Similarity=0.269  Sum_probs=132.8

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ....+.+|+.++++++||||+++++++..+...++|+||+ +++|.+++....     ..+..++.+++.||.|||   +
T Consensus        42 ~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~-~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~  117 (286)
T cd07832          42 IPNQALREIKALQACQHPYVVKLLDVFPHGSGFVLVMEYM-PSDLSEVLRDEERPLPEAQVKSYMRMLLKGVAYMH---A  117 (286)
T ss_pred             hhHHHHHHHHHHHhCCCCCCcceeeEEecCCeeEEEeccc-CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            4567899999999999999999999999999999999999 999999885432     246789999999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc-CCCcchhhHHHHHHHHHHHh
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-VLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~~~~~~~  165 (241)
                      .+++|+||+|+||+++.++.++++|||.+........ .......++..|+|||.+.+. .++.++||||+|+++|++++
T Consensus       118 ~~i~H~dl~p~ni~~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~t  196 (286)
T cd07832         118 NGIMHRDLKPANLLISADGVLKIADFGLARLFSEEEP-RLYSHQVATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLN  196 (286)
T ss_pred             CCeecCCcCHHHEEEcCCCcEEEeeeeecccccCCCC-CccccccCcccccCceeeeccccCCchhHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999876544321 111234678899999988654 46889999999999999999


Q ss_pred             cCccccc
Q 044022          166 GRIHIWD  172 (241)
Q Consensus       166 g~~p~~~  172 (241)
                      |.+||..
T Consensus       197 g~~~~~~  203 (286)
T cd07832         197 GSPLFPG  203 (286)
T ss_pred             CCcCcCC
Confidence            9877743

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=100.00  E-value=2.7e-34  Score=235.71  Aligned_cols=157  Identities=17%  Similarity=0.195  Sum_probs=134.7

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC--Cc---hHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA--PL---PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~--~~---~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ....+.+|+.++..++|+||+++++++...+..++||||+++|+|.+++...  ..   ....++.|++.||.|||   +
T Consensus        44 ~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~~~~lv~Ey~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~~L~~lH---~  120 (331)
T cd05624          44 ETACFREERNVLVNGDCQWITTLHYAFQDENYLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYIAEMVLAIHSIH---Q  120 (331)
T ss_pred             HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEEeCCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            3455788999999999999999999999999999999999999999998653  11   35678899999999999   9


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc-----cCCCcchhhHHHHHHHH
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI-----CVLNEKSNVFSFGAFLF  161 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-----~~~~~~~Di~s~G~~~~  161 (241)
                      ++++||||||+|||++.++.++|+|||++.......... .....|++.|+|||++.+     ..++.++|+||||+++|
T Consensus       121 ~~iiHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~  199 (331)
T cd05624         121 LHYVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQDGTVQ-SSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMY  199 (331)
T ss_pred             CCeeeccCchHHEEEcCCCCEEEEeccceeeccCCCcee-eccccCCcccCCHHHHhccccCCCCCCCcccEEeeehhhh
Confidence            999999999999999999999999999987654432221 133468999999999875     45788999999999999


Q ss_pred             HHHhcCccccc
Q 044022          162 ELLAGRIHIWD  172 (241)
Q Consensus       162 ~~~~g~~p~~~  172 (241)
                      +|++|+.||..
T Consensus       200 ell~g~~Pf~~  210 (331)
T cd05624         200 EMLYGETPFYA  210 (331)
T ss_pred             hhhhCCCCccC
Confidence            99999999964

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=100.00  E-value=6e-34  Score=228.90  Aligned_cols=203  Identities=22%  Similarity=0.266  Sum_probs=152.1

Q ss_pred             HHHHHHHHHHHHhc-CCCcccceeeeee-----eCCcceEEEEecCCCCHHHhhcCC-----Cc---hHHHHHHHHHHHh
Q 044022           13 YGSCINNITYAAQM-SHNHILKRIGCCL-----QTPIPILVFQSVEYGTLRDCIFGA-----PL---PRLKIASDIVNSL   78 (241)
Q Consensus        13 ~~~~~~e~~~l~~l-~h~~iv~~~~~~~-----~~~~~~lv~e~~~~~sL~~~l~~~-----~~---~~~~~~~~i~~~l   78 (241)
                      ...+.+|+.+++.+ +||||+++++++.     .++..++||||+++++|.+++...     ..   ....++.+++.|+
T Consensus        58 ~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l  137 (286)
T cd06638          58 DEEIEAEYNILKALSDHPNVVKFYGMYYKKDVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGL  137 (286)
T ss_pred             HHHHHHHHHHHHHHhcCCCeeeeeeeeeecccCCCCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHH
Confidence            46688899999999 7999999999885     345689999999999999876421     11   3567899999999


Q ss_pred             chhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc-----cCCCcchhh
Q 044022           79 AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI-----CVLNEKSNV  153 (241)
Q Consensus        79 ~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-----~~~~~~~Di  153 (241)
                      .|||   +.+++|+||||+||+++.++.++++|||.+........  ......++..|+|||++..     ..++.++|+
T Consensus       138 ~~lH---~~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv  212 (286)
T cd06638         138 QHLH---VNKTIHRDVKGNNILLTTEGGVKLVDFGVSAQLTSTRL--RRNTSVGTPFWMAPEVIACEQQLDSTYDARCDV  212 (286)
T ss_pred             HHHH---hCCccccCCCHHhEEECCCCCEEEccCCceeecccCCC--ccccccCCCcccChhhhchhhhccccccchhhh
Confidence            9999   89999999999999999999999999999876543221  1123468889999998753     347889999


Q ss_pred             HHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCC
Q 044022          154 FSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSP  233 (241)
Q Consensus       154 ~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p  233 (241)
                      ||+|+++|++++|+.||......         +....... ........+   .        ..+..+.+++.+||+.||
T Consensus       213 ~slGvi~~el~~g~~p~~~~~~~---------~~~~~~~~-~~~~~~~~~---~--------~~~~~~~~li~~~l~~~p  271 (286)
T cd06638         213 WSLGITAIELGDGDPPLADLHPM---------RALFKIPR-NPPPTLHQP---E--------LWSNEFNDFIRKCLTKDY  271 (286)
T ss_pred             hhHHHHHHHHhcCCCCCCCCchh---------HHHhhccc-cCCCcccCC---C--------CcCHHHHHHHHHHccCCc
Confidence            99999999999999998652110         00111000 000000000   0        122568899999999999


Q ss_pred             CCCCCCCC
Q 044022          234 EDRPTMVD  241 (241)
Q Consensus       234 ~~Rpt~~e  241 (241)
                      ++|||+.|
T Consensus       272 ~~Rps~~e  279 (286)
T cd06638         272 EKRPTVSD  279 (286)
T ss_pred             ccCCCHHH
Confidence            99999864

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=100.00  E-value=1.9e-34  Score=231.66  Aligned_cols=156  Identities=21%  Similarity=0.276  Sum_probs=132.4

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ..+.+.+|+++++.++||||+++++++...+..++|+||+++++|..+.....    .....++.+++.|++|||   +.
T Consensus        43 ~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH---~~  119 (286)
T cd07846          43 VKKIAMREIRMLKQLRHENLVNLIEVFRRKKRLYLVFEFVDHTVLDDLEKYPNGLDESRVRKYLFQILRGIEFCH---SH  119 (286)
T ss_pred             hhHHHHHHHHHHHhcCCcchhhHHHhcccCCeEEEEEecCCccHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---HC
Confidence            45678899999999999999999999999999999999999888888765432    256788999999999999   89


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc-CCCcchhhHHHHHHHHHHHhc
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-VLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      +++|+||+|+||+++.++.++|+|||++.........  .....++..|+|||++.+. .++.++||||||+++|++++|
T Consensus       120 ~i~h~~l~p~ni~~~~~~~~~l~dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~~g  197 (286)
T cd07846         120 NIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEV--YTDYVATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTG  197 (286)
T ss_pred             CccccCCCHHHEEECCCCcEEEEeeeeeeeccCCccc--cCcccceeeccCcHHhccccccCchHhHHHHHHHHHHHHcC
Confidence            9999999999999999999999999998765443221  1224577889999998753 467899999999999999999


Q ss_pred             Cccccc
Q 044022          167 RIHIWD  172 (241)
Q Consensus       167 ~~p~~~  172 (241)
                      ++||..
T Consensus       198 ~~~~~~  203 (286)
T cd07846         198 EPLFPG  203 (286)
T ss_pred             CCCCCC
Confidence            998853

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.1e-33  Score=261.24  Aligned_cols=212  Identities=23%  Similarity=0.343  Sum_probs=160.8

Q ss_pred             HHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc-hHHHHHHHHHHHhchhhcCCCCCceeccCC
Q 044022           17 INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL-PRLKIASDIVNSLAYLHFGFPRPIVLRNFK   95 (241)
Q Consensus        17 ~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~   95 (241)
                      ..|++++++++|||||+++++|...+..++||||+++|+|.++++.... .+.+++.+++.|++|||..++.+++|||||
T Consensus       731 ~~~~~~l~~l~HpnIv~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlk  810 (968)
T PLN00113        731 SSEIADMGKLQHPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVLRNLSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLS  810 (968)
T ss_pred             HHHHHHHhhCCCCCcceEEEEEEcCCCCEEEEeCCCCCcHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCC
Confidence            3568999999999999999999999999999999999999999976443 578899999999999997667799999999


Q ss_pred             CCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcCcccccccc
Q 044022           96 TQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLK  175 (241)
Q Consensus        96 ~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~~p~~~~~~  175 (241)
                      |+||+++.++.+++. |+........      ....++..|+|||++.+..++.++||||||+++|||++|+.||.....
T Consensus       811 p~Nil~~~~~~~~~~-~~~~~~~~~~------~~~~~t~~y~aPE~~~~~~~~~~sDv~S~Gvvl~el~tg~~p~~~~~~  883 (968)
T PLN00113        811 PEKIIIDGKDEPHLR-LSLPGLLCTD------TKCFISSAYVAPETRETKDITEKSDIYGFGLILIELLTGKSPADAEFG  883 (968)
T ss_pred             HHhEEECCCCceEEE-eccccccccC------CCccccccccCcccccCCCCCcccchhhHHHHHHHHHhCCCCCCcccC
Confidence            999999998888775 4443322111      223578899999999988999999999999999999999999854211


Q ss_pred             cCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          176 DTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                          ......++.+............++.+....+.  ...+...+.+++.+||+.||++|||++|
T Consensus       884 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~Cl~~~P~~RPt~~e  943 (968)
T PLN00113        884 ----VHGSIVEWARYCYSDCHLDMWIDPSIRGDVSV--NQNEIVEVMNLALHCTATDPTARPCAND  943 (968)
T ss_pred             ----CCCcHHHHHHHhcCccchhheeCccccCCCCc--cHHHHHHHHHHHHhhCcCCchhCcCHHH
Confidence                12223344433332232333334443322221  1244567889999999999999999864

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=100.00  E-value=1.3e-33  Score=222.19  Aligned_cols=203  Identities=25%  Similarity=0.374  Sum_probs=160.9

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC--Cc---hHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA--PL---PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~--~~---~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ....+.+|++++++++|+|++++.+.+......++++||+++++|.+++...  ..   ....++.+++.|+.+||   .
T Consensus        40 ~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh---~  116 (253)
T cd05122          40 KKEKIINEIQILKKCKHPNIVKYYGSYLKKDELWIVMEFCSGGSLKDLLKSTNQTLTESQIAYVCKELLKGLEYLH---S  116 (253)
T ss_pred             HHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEecCCCCcHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhh---c
Confidence            5677899999999999999999999999999999999999999999998665  22   45678999999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhc
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      .+++|+||+|+||+++.++.++|+|||.+........   .....++..|+|||.+.+...+.++|+||||+++|++++|
T Consensus       117 ~~i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~---~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~il~~l~~g  193 (253)
T cd05122         117 NGIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKA---RNTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEG  193 (253)
T ss_pred             CCEecCCCCHHHEEEccCCeEEEeecccccccccccc---ccceecCCcccCHHHHcCCCCCccccHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999876654321   2334678899999999888889999999999999999999


Q ss_pred             CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          167 RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +.||.....         .+...... ..........     .      ..+..+.+++.+||..||++|||++|
T Consensus       194 ~~p~~~~~~---------~~~~~~~~-~~~~~~~~~~-----~------~~~~~~~~~i~~~l~~~p~~R~t~~~  247 (253)
T cd05122         194 KPPYSELPP---------MKALFKIA-TNGPPGLRNP-----E------KWSDEFKDFLKKCLQKNPEKRPTAEQ  247 (253)
T ss_pred             CCCCCCCch---------HHHHHHHH-hcCCCCcCcc-----c------ccCHHHHHHHHHHccCChhhCCCHHH
Confidence            999854210         11111111 1111111110     0      11357899999999999999999864

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=100.00  E-value=7.4e-34  Score=224.73  Aligned_cols=202  Identities=22%  Similarity=0.266  Sum_probs=158.3

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC------chHHHHHHHHHHHhchhhcCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP------LPRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~------~~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ..+.+.+|++++++++|+|++++++.+......++|+||+++++|.+++....      .....++.+++.|+.|||   
T Consensus        42 ~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh---  118 (257)
T cd08225          42 EKEASKKEVILLAKMKHPNIVTFFASFQENGRLFIVMEYCDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIH---  118 (257)
T ss_pred             hhHHHHHHHHHHHhCCCCChhhhhheeccCCeEEEEEecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            45678899999999999999999999999999999999999999999886532      146788999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCC-CeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHH
Q 044022           86 PRPIVLRNFKTQNILFNEEN-VAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~-~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~  164 (241)
                      +.+++|+||+|+||+++.++ .++++|||.+..........  ....++..|+|||+..+..++.++|+||||+++|+++
T Consensus       119 ~~~i~H~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~~~--~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~  196 (257)
T cd08225         119 DRKILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDSMELA--YTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELC  196 (257)
T ss_pred             HCCcccccCCHHHEEEcCCCCeEEecccccchhccCCcccc--cccCCCccccCHHHHcCCCCCchhhHHHHHHHHHHHH
Confidence            89999999999999999885 46999999887654332211  2235788899999998888999999999999999999


Q ss_pred             hcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          165 AGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       165 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +|..||....         ..+....... .....     ...        ..+..+.+++.+||..+|++|||++|
T Consensus       197 ~g~~p~~~~~---------~~~~~~~~~~-~~~~~-----~~~--------~~~~~~~~~i~~~l~~~p~~Rpt~~~  250 (257)
T cd08225         197 TLKHPFEGNN---------LHQLVLKICQ-GYFAP-----ISP--------NFSRDLRSLISQLFKVSPRDRPSITS  250 (257)
T ss_pred             hCCCCCCCcc---------HHHHHHHHhc-ccCCC-----CCC--------CCCHHHHHHHHHHhccChhhCcCHHH
Confidence            9999985411         1111221111 11111     111        12257889999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-34  Score=241.00  Aligned_cols=205  Identities=19%  Similarity=0.268  Sum_probs=162.8

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHHHhchhhcCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ...+.|+-||+||..+.||+||++++.|..++.+||..|||.||.+...+-...     .++..++.+++.||.|||   
T Consensus        71 EELEDylVEIeILa~CdHP~ivkLl~ayy~enkLwiliEFC~GGAVDaimlEL~r~LtE~QIqvvc~q~ldALn~LH---  147 (1187)
T KOG0579|consen   71 EELEDYLVEIEILAECDHPVIVKLLSAYYFENKLWILIEFCGGGAVDAIMLELGRVLTEDQIQVVCYQVLDALNWLH---  147 (1187)
T ss_pred             hHHhhhhhhhhhhhcCCChHHHHHHHHHhccCceEEEEeecCCchHhHHHHHhccccchHHHHHHHHHHHHHHHHHh---
Confidence            356678899999999999999999999999999999999999999988765432     367788999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc-----cCCCcchhhHHHHHHH
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI-----CVLNEKSNVFSFGAFL  160 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-----~~~~~~~Di~s~G~~~  160 (241)
                      +..|+|||||+.|||+..+|.++++|||++...  ..+.....+.+||++|||||++.+     .+|+.++||||||+.+
T Consensus       148 s~~iIHRDLKAGNiL~TldGdirLADFGVSAKn--~~t~qkRDsFIGTPYWMAPEVvmCET~KD~PYDykaDiWSlGITL  225 (1187)
T KOG0579|consen  148 SQNIIHRDLKAGNILLTLDGDIRLADFGVSAKN--KSTRQKRDSFIGTPYWMAPEVVMCETFKDQPYDYKADIWSLGITL  225 (1187)
T ss_pred             hcchhhhhccccceEEEecCcEeeecccccccc--hhHHhhhccccCCcccccchheeeccccCCCchhhhhHHhhhhHH
Confidence            999999999999999999999999999998653  334445577899999999998854     4789999999999999


Q ss_pred             HHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          161 FELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       161 ~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                      .||..+.+|-....         ....+....+..      .+.+...      ..-+..+.+++..||.+||..||++.
T Consensus       226 IEMAqiEPPHheln---------pMRVllKiaKSe------PPTLlqP------S~Ws~~F~DfLk~cL~Knp~~Rp~aa  284 (1187)
T KOG0579|consen  226 IEMAQIEPPHHELN---------PMRVLLKIAKSE------PPTLLQP------SHWSRSFSDFLKRCLVKNPRNRPPAA  284 (1187)
T ss_pred             HHHhccCCCccccc---------hHHHHHHHhhcC------CCcccCc------chhhhHHHHHHHHHHhcCCccCCCHH
Confidence            99999999854311         111111111111      1111111      13335789999999999999999985


Q ss_pred             C
Q 044022          241 D  241 (241)
Q Consensus       241 e  241 (241)
                      +
T Consensus       285 q  285 (1187)
T KOG0579|consen  285 Q  285 (1187)
T ss_pred             H
Confidence            3

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=100.00  E-value=1.5e-33  Score=227.50  Aligned_cols=204  Identities=16%  Similarity=0.252  Sum_probs=158.9

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc---hHHHHHHHHHHHhchhhcCCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL---PRLKIASDIVNSLAYLHFGFPRP   88 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~i~~~l~~lh~~~~~~   88 (241)
                      ....+.+|+.++++++|+|++++++.+...+..++||||+++++|.+++.....   ....++.+++.|++|||   +.+
T Consensus        60 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~ql~~~l~~lH---~~g  136 (292)
T cd06657          60 RRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLKALSVLH---AQG  136 (292)
T ss_pred             HHHHHHHHHHHHHhcCCcchhheeeEEEeCCEEEEEEecCCCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCC
Confidence            456788999999999999999999999999999999999999999998755432   45778999999999999   899


Q ss_pred             ceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcCc
Q 044022           89 IVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRI  168 (241)
Q Consensus        89 ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~~  168 (241)
                      ++|+||+|+||+++.++.++|+|||.+........  ......++..|+|||.+.+..++.++|+||+|+++|++++|..
T Consensus       137 ivH~dl~p~Nilv~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slGvil~el~tg~~  214 (292)
T cd06657         137 VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP--RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEP  214 (292)
T ss_pred             eecCCCCHHHEEECCCCCEEEcccccceecccccc--cccccccCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999998876543321  1123457888999999988888999999999999999999999


Q ss_pred             ccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          169 HIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       169 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ||....         ..+......... .....  .. .        ..+..+.+++.+||..||.+|||+.|
T Consensus       215 p~~~~~---------~~~~~~~~~~~~-~~~~~--~~-~--------~~~~~l~~li~~~l~~~P~~R~~~~~  266 (292)
T cd06657         215 PYFNEP---------PLKAMKMIRDNL-PPKLK--NL-H--------KVSPSLKGFLDRLLVRDPAQRATAAE  266 (292)
T ss_pred             CCCCCC---------HHHHHHHHHhhC-CcccC--Cc-c--------cCCHHHHHHHHHHHhCCcccCcCHHH
Confidence            985411         111111111100 00000  00 0        12256789999999999999999853

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=100.00  E-value=1.5e-33  Score=227.49  Aligned_cols=154  Identities=20%  Similarity=0.228  Sum_probs=130.4

Q ss_pred             HHHHHHHHHHHHhcCCCcccceeeeeeeC--CcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHHHhchhhcCC
Q 044022           13 YGSCINNITYAAQMSHNHILKRIGCCLQT--PIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~--~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ...+.+|+.++++++||||+++++++...  +..++|+||+. ++|.+++....     .....++.+++.||.|||   
T Consensus        48 ~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---  123 (293)
T cd07843          48 PITSLREINILLKLQHPNIVTVKEVVVGSNLDKIYMVMEYVE-HDLKSLMETMKQPFLQSEVKCLMLQLLSGVAHLH---  123 (293)
T ss_pred             hhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEEEEehhcC-cCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            44678899999999999999999999877  78999999997 59988876432     146789999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc-CCCcchhhHHHHHHHHHHH
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-VLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~~~~~~  164 (241)
                      +.+++|+||+|+||+++.++.++|+|||.+........  ......++..|+|||.+.+. .++.++|+||||+++|+|+
T Consensus       124 ~~~i~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~--~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~  201 (293)
T cd07843         124 DNWILHRDLKTSNLLLNNRGILKICDFGLAREYGSPLK--PYTQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELL  201 (293)
T ss_pred             HCCeeeccCCHHHEEECCCCcEEEeecCceeeccCCcc--ccccccccccccCchhhcCCccccchhhHHHHHHHHHHHH
Confidence            89999999999999999999999999999876654321  11233567889999998754 4688999999999999999


Q ss_pred             hcCccccc
Q 044022          165 AGRIHIWD  172 (241)
Q Consensus       165 ~g~~p~~~  172 (241)
                      +|..||..
T Consensus       202 ~g~~~f~~  209 (293)
T cd07843         202 TKKPLFPG  209 (293)
T ss_pred             hCCCCCCC
Confidence            99999864

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=100.00  E-value=2.5e-33  Score=228.66  Aligned_cols=198  Identities=22%  Similarity=0.350  Sum_probs=153.2

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC--C---chHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA--P---LPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~--~---~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ...++.+|++++++++|+|++++++++......++|+||+. |+|.+.+...  .   ..+..++.+++.|+.|||   +
T Consensus        68 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-g~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lH---~  143 (317)
T cd06635          68 KWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLVMEYCL-GSASDLLEVHKKPLQEVEIAAITHGALQGLAYLH---S  143 (317)
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCeEEEEEeCCC-CCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            34578899999999999999999999999999999999997 5787776432  1   246678999999999999   9


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccc---ccCCCcchhhHHHHHHHHHH
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYIS---ICVLNEKSNVFSFGAFLFEL  163 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~---~~~~~~~~Di~s~G~~~~~~  163 (241)
                      .+++|+||+|+||+++.++.++|+|||.+......      ....++..|+|||++.   ...++.++|+||||+++|+|
T Consensus       144 ~~i~H~dL~p~Nil~~~~~~~kl~dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~~~Dv~slGvil~el  217 (317)
T cd06635         144 HNMIHRDIKAGNILLTEPGQVKLADFGSASIASPA------NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIEL  217 (317)
T ss_pred             CCcccCCCCcccEEECCCCCEEEecCCCccccCCc------ccccCCccccChhhhhcCCCCCCCccccHHHHHHHHHHH
Confidence            99999999999999999999999999987654322      2335788899999974   35678899999999999999


Q ss_pred             HhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          164 LAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       164 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ++|+.||....         .............. ...            ....+..+.+++.+||+.+|.+|||+.|
T Consensus       218 ~~g~~p~~~~~---------~~~~~~~~~~~~~~-~~~------------~~~~~~~l~~li~~~l~~~p~~Rpt~~~  273 (317)
T cd06635         218 AERKPPLFNMN---------AMSALYHIAQNESP-TLQ------------SNEWSDYFRNFVDSCLQKIPQDRPTSEE  273 (317)
T ss_pred             HhCCCCCCCcc---------HHHHHHHHHhccCC-CCC------------CccccHHHHHHHHHHccCCcccCcCHHH
Confidence            99999985521         11111111111110 000            0123356899999999999999999753

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=100.00  E-value=1.2e-33  Score=224.27  Aligned_cols=206  Identities=18%  Similarity=0.255  Sum_probs=159.5

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeee--CCcceEEEEecCCCCHHHhhcCC-----C---chHHHHHHHHHHHhch
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQ--TPIPILVFQSVEYGTLRDCIFGA-----P---LPRLKIASDIVNSLAY   80 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~--~~~~~lv~e~~~~~sL~~~l~~~-----~---~~~~~~~~~i~~~l~~   80 (241)
                      ...+++.+|++++++++|+||+++++++..  ....++++||+++++|.+++...     .   ...+.++.+++.||.+
T Consensus        41 ~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~  120 (265)
T cd08217          41 KEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYE  120 (265)
T ss_pred             HHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEEEEehhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHH
Confidence            345678899999999999999999998764  34678999999999999988542     1   1467889999999999


Q ss_pred             hhcCC--CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHH
Q 044022           81 LHFGF--PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGA  158 (241)
Q Consensus        81 lh~~~--~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~  158 (241)
                      ||..+  +.+++|+||+|+||+++.++.++++|||.+..........  ....++..|+|||.+....++.++|+||||+
T Consensus       121 lH~~~~~~~~i~h~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~~~--~~~~~~~~~~~pE~~~~~~~~~~~Dv~slG~  198 (265)
T cd08217         121 CHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKILGHDSSFA--KTYVGTPYYMSPEQLNHMSYDEKSDIWSLGC  198 (265)
T ss_pred             HhcCccccCcceecCCCHHHEEEecCCCEEEecccccccccCCcccc--cccccCCCccChhhhcCCCCCchhHHHHHHH
Confidence            99543  6789999999999999999999999999988765433211  2346788999999998888899999999999


Q ss_pred             HHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCC
Q 044022          159 FLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT  238 (241)
Q Consensus       159 ~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt  238 (241)
                      ++|+|++|+.||....         ..+.... ...+...     .+..        ..+..+.+++.+||+.+|++|||
T Consensus       199 il~~l~~g~~p~~~~~---------~~~~~~~-~~~~~~~-----~~~~--------~~~~~~~~l~~~~l~~~p~~Rp~  255 (265)
T cd08217         199 LIYELCALSPPFTARN---------QLQLASK-IKEGKFR-----RIPY--------RYSSELNEVIKSMLNVDPDKRPS  255 (265)
T ss_pred             HHHHHHHCCCcccCcC---------HHHHHHH-HhcCCCC-----CCcc--------ccCHHHHHHHHHHccCCcccCCC
Confidence            9999999999985411         1111111 1111111     1111        23357889999999999999999


Q ss_pred             CCC
Q 044022          239 MVD  241 (241)
Q Consensus       239 ~~e  241 (241)
                      ++|
T Consensus       256 ~~~  258 (265)
T cd08217         256 TEE  258 (265)
T ss_pred             HHH
Confidence            864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=100.00  E-value=7.5e-34  Score=228.61  Aligned_cols=216  Identities=20%  Similarity=0.222  Sum_probs=155.8

Q ss_pred             cccccccccccHHHHHHHHHHHHhcC-CCcccceeeeeeeCCcceEEEEecCCCCHHHhhc-----C-CC---chHHHHH
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMS-HNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIF-----G-AP---LPRLKIA   71 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~-h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~-----~-~~---~~~~~~~   71 (241)
                      |.+...........+.+|+.++.++. |+||+++++++..++..++++||+. +++.++..     . ..   .....++
T Consensus        35 K~~~~~~~~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~~~~~~~e~~~-~~l~~l~~~~~~~~~~~l~~~~~~~i~  113 (288)
T cd06616          35 KRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKFYGALFREGDCWICMELMD-ISLDKFYKYVYEVLKSVIPEEILGKIA  113 (288)
T ss_pred             EEehhccChHHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCCcEEEEEeccc-CCHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence            44433333345667889999999996 9999999999999889999999986 56655432     1 11   1457889


Q ss_pred             HHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc---CCC
Q 044022           72 SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC---VLN  148 (241)
Q Consensus        72 ~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~---~~~  148 (241)
                      .+++.||+|||.  ..+++||||||+||+++.++.++|+|||++.........   ....++..|+|||++...   .++
T Consensus       114 ~~i~~~l~~lh~--~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~  188 (288)
T cd06616         114 VATVKALNYLKE--ELKIIHRDVKPSNILLDRNGNIKLCDFGISGQLVDSIAK---TRDAGCRPYMAPERIDPSARDGYD  188 (288)
T ss_pred             HHHHHHHHHHhh--cCCeeccCCCHHHEEEccCCcEEEeecchhHHhccCCcc---ccccCccCccCHHHhccccccCCc
Confidence            999999999993  358999999999999999999999999998654432211   223578889999998766   688


Q ss_pred             cchhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHh
Q 044022          149 EKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLEC  228 (241)
Q Consensus       149 ~~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c  228 (241)
                      .++||||||+++|++++|+.||....        ...+....... +     ..+.+.....    ...+..+.+|+.+|
T Consensus       189 ~~~Di~slG~il~el~~g~~p~~~~~--------~~~~~~~~~~~-~-----~~~~~~~~~~----~~~~~~l~~li~~~  250 (288)
T cd06616         189 VRSDVWSLGITLYEVATGKFPYPKWN--------SVFDQLTQVVK-G-----DPPILSNSEE----REFSPSFVNFINLC  250 (288)
T ss_pred             chhhhhHHHHHHHHHHhCCCCchhcc--------hHHHHHhhhcC-C-----CCCcCCCcCC----CccCHHHHHHHHHH
Confidence            99999999999999999999985411        00111111100 0     0111111110    12346789999999


Q ss_pred             ccCCCCCCCCCCC
Q 044022          229 VNNSPEDRPTMVD  241 (241)
Q Consensus       229 l~~~p~~Rpt~~e  241 (241)
                      |+.||++|||++|
T Consensus       251 l~~~p~~Rpt~~~  263 (288)
T cd06616         251 LIKDESKRPKYKE  263 (288)
T ss_pred             ccCChhhCcCHHH
Confidence            9999999999864

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=100.00  E-value=7.5e-34  Score=228.00  Aligned_cols=155  Identities=21%  Similarity=0.295  Sum_probs=131.5

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC---c---hHHHHHHHHHHHhchhhcCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP---L---PRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~---~---~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ....+.+|+++++.++|||++++++++...+..++++||+. ++|.+++....   .   ....++.+++.||.|||   
T Consensus        41 ~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~~~~iv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~lH---  116 (283)
T cd07835          41 VPSTAIREISLLKELNHPNIVRLLDVVHSENKLYLVFEFLD-LDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCH---  116 (283)
T ss_pred             chhHHHHHHHHHHhcCCCCccCHhheeccCCeEEEEEeccC-cCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            44678899999999999999999999999999999999995 79999886543   1   46789999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc-CCCcchhhHHHHHHHHHHH
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-VLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~~~~~~  164 (241)
                      +.+++|+||+|+||+++.++.++|+|||.+.........  .....++..|+|||++.+. .++.++|+||||+++|+++
T Consensus       117 ~~~~~H~dl~p~nil~~~~~~~~l~df~~~~~~~~~~~~--~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~  194 (283)
T cd07835         117 SHRVLHRDLKPQNLLIDREGALKLADFGLARAFGVPVRT--YTHEVVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMV  194 (283)
T ss_pred             HCCeeCCCCCHHHEEEcCCCcEEEeecccccccCCCccc--cCccccccCCCCCceeecCcccCcHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999998754332211  1223457889999988654 4688999999999999999


Q ss_pred             hcCccccc
Q 044022          165 AGRIHIWD  172 (241)
Q Consensus       165 ~g~~p~~~  172 (241)
                      +|+.||..
T Consensus       195 ~g~~pf~~  202 (283)
T cd07835         195 NRRPLFPG  202 (283)
T ss_pred             hCCCCCCC
Confidence            99999854

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.9e-33  Score=223.03  Aligned_cols=197  Identities=20%  Similarity=0.171  Sum_probs=151.1

Q ss_pred             HHHHHHHHH-HhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCCCCc
Q 044022           15 SCINNITYA-AQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFPRPI   89 (241)
Q Consensus        15 ~~~~e~~~l-~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~~~i   89 (241)
                      .+..|..++ .+++|+|++++++++...+..++|+||+++++|.+++....    .....++.|++.||.|||   +.++
T Consensus        42 ~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH---~~~i  118 (260)
T cd05611          42 NVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYLNGGDCASLIKTLGGLPEDWAKQYIAEVVLGVEDLH---QRGI  118 (260)
T ss_pred             HHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEeccCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCe
Confidence            344554444 44589999999999999999999999999999999986542    246788999999999999   8999


Q ss_pred             eeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcCcc
Q 044022           90 VLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIH  169 (241)
Q Consensus        90 vh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~~p  169 (241)
                      +|+||+|+||+++.++.++|+|||.+......      ....++..|+|||.+.+..++.++|+||||+++|++++|..|
T Consensus       119 ~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~------~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p  192 (260)
T cd05611         119 IHRDIKPENLLIDQTGHLKLTDFGLSRNGLEN------KKFVGTPDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYPP  192 (260)
T ss_pred             ecCCCCHHHeEECCCCcEEEeecccceecccc------ccCCCCcCccChhhhcCCCCcchhhhHHHHHHHHHHHHCCCC
Confidence            99999999999999999999999988654331      233577889999999887889999999999999999999999


Q ss_pred             cccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          170 IWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                      |.....         ....... ......  .......        ..+..+.+++.+||+.||++|||+.
T Consensus       193 ~~~~~~---------~~~~~~~-~~~~~~--~~~~~~~--------~~~~~~~~~i~~~l~~~p~~R~~~~  243 (260)
T cd05611         193 FHAETP---------DAVFDNI-LSRRIN--WPEEVKE--------FCSPEAVDLINRLLCMDPAKRLGAN  243 (260)
T ss_pred             CCCCCH---------HHHHHHH-HhcccC--CCCcccc--------cCCHHHHHHHHHHccCCHHHccCCC
Confidence            954211         1111111 111100  0001111        2336789999999999999999874

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=100.00  E-value=1.1e-33  Score=226.75  Aligned_cols=219  Identities=21%  Similarity=0.205  Sum_probs=151.4

Q ss_pred             HHHHHHHHHHHhcC-CCcccceeeeeeeC--CcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHHHhchhhcCC
Q 044022           14 GSCINNITYAAQMS-HNHILKRIGCCLQT--PIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        14 ~~~~~e~~~l~~l~-h~~iv~~~~~~~~~--~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ....+|+.++.++. |+|++++++++...  +..++|+||+. ++|.+.+....     .....++.+++.||.|||   
T Consensus        42 ~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH---  117 (282)
T cd07831          42 VNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALVFELMD-MNLYELIKGRKRPLPEKRVKSYMYQLLKSLDHMH---  117 (282)
T ss_pred             hhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEEEecCC-ccHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            34567999999995 99999999999987  88999999997 58888775421     146788999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc-cCCCcchhhHHHHHHHHHHH
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI-CVLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~~~~~~  164 (241)
                      +.+++|+||+|+||+++. +.++|+|||.+.........   ....++..|+|||++.. ..++.++|+||||+++|+|+
T Consensus       118 ~~~i~H~dl~p~ni~l~~-~~~kl~dfg~~~~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~~Di~slGv~l~el~  193 (282)
T cd07831         118 RNGIFHRDIKPENILIKD-DILKLADFGSCRGIYSKPPY---TEYISTRWYRAPECLLTDGYYGPKMDIWAVGCVFFEIL  193 (282)
T ss_pred             HCCceecccCHHHEEEcC-CCeEEEecccccccccCCCc---CCCCCCcccCChhHhhcCCCCCcchhHHHHHHHHHHHH
Confidence            899999999999999999 99999999998765433221   22356788999997654 45688999999999999999


Q ss_pred             hcCcccccccccCC------CcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCC
Q 044022          165 AGRIHIWDLLKDTH------DHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT  238 (241)
Q Consensus       165 ~g~~p~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt  238 (241)
                      +|..||........      ..+....++........ ......+..............+..+.+++.+||+.+|++|||
T Consensus       194 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~  272 (282)
T cd07831         194 SLFPLFPGTNELDQIAKIHDVLGTPDAEVLKKFRKSR-HMNYNFPSKKGTGLRKLLPNASAEGLDLLKKLLAYDPDERIT  272 (282)
T ss_pred             cCCcCCCCCCHHHHHHHHHHHcCCCCHHHHHhhcccc-cccccCcccccccHHHHcccccHHHHHHHHHHhccCcccccC
Confidence            99999954211000      00000000000000000 000000000000000001134578999999999999999999


Q ss_pred             CCC
Q 044022          239 MVD  241 (241)
Q Consensus       239 ~~e  241 (241)
                      ++|
T Consensus       273 ~~~  275 (282)
T cd07831         273 AKQ  275 (282)
T ss_pred             HHH
Confidence            864

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=100.00  E-value=7.3e-34  Score=231.42  Aligned_cols=158  Identities=22%  Similarity=0.216  Sum_probs=129.8

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeC--CcceEEEEecCCCCHHHhhcCC------C---chHHHHHHHHHHHhch
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQT--PIPILVFQSVEYGTLRDCIFGA------P---LPRLKIASDIVNSLAY   80 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~--~~~~lv~e~~~~~sL~~~l~~~------~---~~~~~~~~~i~~~l~~   80 (241)
                      ..+.+.+|+.++++++||||+++++++...  ...++|+||++ ++|.+.+...      .   .....++.|++.||.|
T Consensus        45 ~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~  123 (316)
T cd07842          45 ISQSACREIALLRELKHENVVSLVEVFLEHADKSVYLLFDYAE-HDLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHY  123 (316)
T ss_pred             ccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceEEEEEeCCC-cCHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHH
Confidence            356778899999999999999999999987  78999999997 5777665322      1   1356789999999999


Q ss_pred             hhcCCCCCceeccCCCCCeeecC----CCCeEEeeccCceecCCCCc-ceeecccccCCCccCccccccc-CCCcchhhH
Q 044022           81 LHFGFPRPIVLRNFKTQNILFNE----ENVAKWFDFLLSISIPEGET-HITTDRVIGTRGYSAPEYISIC-VLNEKSNVF  154 (241)
Q Consensus        81 lh~~~~~~ivh~dl~~~nil~~~----~~~~~l~df~~~~~~~~~~~-~~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~  154 (241)
                      ||   +.+++|+||||+||+++.    ++.+||+|||++........ ........++..|+|||++.+. .++.++|+|
T Consensus       124 lH---~~~i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~  200 (316)
T cd07842         124 LH---SNWVLHRDLKPANILVMGEGPERGVVKIGDLGLARLFNAPLKPLADLDPVVVTIWYRAPELLLGARHYTKAIDIW  200 (316)
T ss_pred             HH---hCCEeeCCCCHHHEEEcCCCCccceEEECCCccccccCCCcccccccCCccccccccCHHHHhCCCCCCcHHHHH
Confidence            99   999999999999999999    99999999999876543322 1122234567889999988764 578999999


Q ss_pred             HHHHHHHHHHhcCcccccc
Q 044022          155 SFGAFLFELLAGRIHIWDL  173 (241)
Q Consensus       155 s~G~~~~~~~~g~~p~~~~  173 (241)
                      |||+++|+|++|++||...
T Consensus       201 slG~~l~~l~~~~~~~~~~  219 (316)
T cd07842         201 AIGCIFAELLTLEPIFKGR  219 (316)
T ss_pred             HHHHHHHHHHhcCCCCcCC
Confidence            9999999999999999653

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-34  Score=231.28  Aligned_cols=204  Identities=23%  Similarity=0.292  Sum_probs=165.7

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc------hHHHHHHHHHHHhchhhcC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL------PRLKIASDIVNSLAYLHFG   84 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~------~~~~~~~~i~~~l~~lh~~   84 (241)
                      .++.-.++|-++|.+++.+.||.+--.|...+.+|+|+..|.||+|.-.|.....      ....++.+|+.||.+||  
T Consensus       227 ~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd~LClVLtlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH--  304 (591)
T KOG0986|consen  227 KGETMALNEKQILEKVSSPFIVSLAYAFETKDALCLVLTLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLH--  304 (591)
T ss_pred             hhhHHhhHHHHHHHHhccCcEEEEeeeecCCCceEEEEEeecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHHH--
Confidence            4566678999999999999999999999999999999999999999888866532      35678999999999999  


Q ss_pred             CCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHH
Q 044022           85 FPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        85 ~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~  164 (241)
                       ..+||.||+||+|||+|..|+++|+|+|++..++.+.....   .+||.+|||||++....|+...|.||+||++|+|+
T Consensus       305 -~~~iVYRDLKPeNILLDd~GhvRISDLGLAvei~~g~~~~~---rvGT~GYMAPEvl~ne~Y~~s~Dwf~lGCllYemi  380 (591)
T KOG0986|consen  305 -RRRIVYRDLKPENILLDDHGHVRISDLGLAVEIPEGKPIRG---RVGTVGYMAPEVLQNEVYDFSPDWFSLGCLLYEMI  380 (591)
T ss_pred             -hcceeeccCChhheeeccCCCeEeeccceEEecCCCCcccc---ccCcccccCHHHHcCCcccCCccHHHHHhHHHHHH
Confidence             99999999999999999999999999999999887765443   38999999999999999999999999999999999


Q ss_pred             hcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          165 AGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       165 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                      .|+.||...-               ...+....    +.+...+. -...+..+++.+++.+..|.+||++|....
T Consensus       381 ~G~sPFr~~K---------------eKvk~eEv----drr~~~~~-~ey~~kFS~eakslc~~LL~Kdp~~RLGcr  436 (591)
T KOG0986|consen  381 AGHSPFRQRK---------------EKVKREEV----DRRTLEDP-EEYSDKFSEEAKSLCEGLLTKDPEKRLGCR  436 (591)
T ss_pred             cccCchhhhh---------------hhhhHHHH----HHHHhcch-hhcccccCHHHHHHHHHHHccCHHHhccCC
Confidence            9999996511               11110000    00000000 011135668899999999999999997653

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-35  Score=262.51  Aligned_cols=204  Identities=20%  Similarity=0.319  Sum_probs=162.9

Q ss_pred             cccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCC
Q 044022           10 RHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        10 ~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~   85 (241)
                      +...+...+|..++..++|||+|+++|+=......+|.||||++|+|.+.+.....    ....+-.|++.|++|||   
T Consensus      1275 ~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRekv~IFMEyC~~GsLa~ll~~gri~dE~vt~vyt~qll~gla~LH--- 1351 (1509)
T KOG4645|consen 1275 HKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHREKVYIFMEYCEGGSLASLLEHGRIEDEMVTRVYTKQLLEGLAYLH--- 1351 (1509)
T ss_pred             cccCcchHHHHHHHHhccCccccccCceeecHHHHHHHHHHhccCcHHHHHHhcchhhhhHHHHHHHHHHHHHHHHH---
Confidence            56677888999999999999999999999999999999999999999999876532    23456789999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcc--eeecccccCCCccCccccccc---CCCcchhhHHHHHHH
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH--ITTDRVIGTRGYSAPEYISIC---VLNEKSNVFSFGAFL  160 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~--~~~~~~~~~~~~~aPE~~~~~---~~~~~~Di~s~G~~~  160 (241)
                      +.|||||||||.||+++.+|.+|++|||.++.+......  .......||+.|||||++.+.   ....+.||||+||++
T Consensus      1352 ~~gIVHRDIK~aNI~Ld~~g~iK~~DFGsa~ki~~~~~~~~~el~~~~GT~~YMAPEvit~t~~kG~~~A~DiWslGCVV 1431 (1509)
T KOG4645|consen 1352 EHGIVHRDIKPANILLDFNGLIKYGDFGSAVKIKNNAQTMPGELQSMMGTPMYMAPEVITGTKGKGHGGAADIWSLGCVV 1431 (1509)
T ss_pred             hcCceecCCCccceeeecCCcEEeecccceeEecCchhcCCHHHHhhcCCchhcCchhhcccccCCCCcchhhhcccceE
Confidence            999999999999999999999999999999887665311  122356799999999999865   355789999999999


Q ss_pred             HHHHhcCcccccccccCCCcccchHHHHHHH-hhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCC
Q 044022          161 FELLAGRIHIWDLLKDTHDHGCFFNEYLKNY-LEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM  239 (241)
Q Consensus       161 ~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~  239 (241)
                      .||+||+.||....++          |.-.+ ...+....++.             ..+.+-++++..||+.||++|=|+
T Consensus      1432 lEM~tGkrPW~~~dne----------~aIMy~V~~gh~Pq~P~-------------~ls~~g~dFle~Cl~~dP~~Rw~~ 1488 (1509)
T KOG4645|consen 1432 LEMATGKRPWAELDNE----------WAIMYHVAAGHKPQIPE-------------RLSSEGRDFLEHCLEQDPKMRWTA 1488 (1509)
T ss_pred             EEeecCCCchhhccch----------hHHHhHHhccCCCCCch-------------hhhHhHHHHHHHHHhcCchhhhHH
Confidence            9999999999653221          11111 12222222222             133567899999999999999766

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=100.00  E-value=8.8e-34  Score=224.10  Aligned_cols=201  Identities=20%  Similarity=0.273  Sum_probs=160.2

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC-----Cc---hHHHHHHHHHHHhchhh
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA-----PL---PRLKIASDIVNSLAYLH   82 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~-----~~---~~~~~~~~i~~~l~~lh   82 (241)
                      ....++.+|++++++++|+||+++.+++......++|+||+++++|.+++...     ..   ....++.+++.|+.|||
T Consensus        41 ~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh  120 (256)
T cd08530          41 KEREDAVNEIRILASVNHPNIISYKEAFLDGNKLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALH  120 (256)
T ss_pred             HHHHHHHHHHHHHHhCCCCCchhhhhhhccCCEEEEEehhcCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHh
Confidence            34567889999999999999999999999999999999999999999987551     11   35688999999999999


Q ss_pred             cCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHH
Q 044022           83 FGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFE  162 (241)
Q Consensus        83 ~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~  162 (241)
                         +.+++|+||+|.||+++.++.++++|||.+........    ....++..|+|||.+.+..++.++|+||||+++|+
T Consensus       121 ---~~~i~h~~l~~~ni~~~~~~~~kl~d~g~~~~~~~~~~----~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~  193 (256)
T cd08530         121 ---EQKILHRDLKSANILLVANDLVKIGDLGISKVLKKNMA----KTQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYE  193 (256)
T ss_pred             ---hCCcccCCCCcceEEEecCCcEEEeeccchhhhccCCc----ccccCCccccCHHHHCCCCCCchhhHHHHHHHHHH
Confidence               99999999999999999999999999999876654421    22457888999999988888999999999999999


Q ss_pred             HHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          163 LLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       163 ~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +++|+.||....         ..+... ...........             ...+.++.+++.+||..+|++|||+.|
T Consensus       194 l~~g~~p~~~~~---------~~~~~~-~~~~~~~~~~~-------------~~~~~~~~~li~~~l~~~p~~Rp~~~~  249 (256)
T cd08530         194 MATFAPPFEARS---------MQDLRY-KVQRGKYPPIP-------------PIYSQDLQNFIRSMLQVKPKLRPNCDK  249 (256)
T ss_pred             HHhCCCCCCCCC---------HHHHHH-HHhcCCCCCCc-------------hhhCHHHHHHHHHHcCCCcccCCCHHH
Confidence            999999985411         111111 11111111111             133467899999999999999999754

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=100.00  E-value=2.4e-33  Score=221.55  Aligned_cols=207  Identities=23%  Similarity=0.255  Sum_probs=163.1

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeC--CcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQT--PIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFG   84 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~--~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~   84 (241)
                      ...+.+.+|+.++++++|+||+++++.+...  ...++++||+++++|.+++.....    .+..++.+++.|+.|||  
T Consensus        41 ~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh--  118 (260)
T cd06606          41 EELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFLEYVSGGSLSSLLKKFGKLPEPVIRKYTRQILEGLAYLH--  118 (260)
T ss_pred             HHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEEEEEecCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH--
Confidence            3467889999999999999999999999988  789999999999999999866522    46788999999999999  


Q ss_pred             CCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHH
Q 044022           85 FPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        85 ~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~  164 (241)
                       +.+++|+||+|+||+++.++.++|+|||.+................++..|+|||.......+.++|+||||+++++++
T Consensus       119 -~~~~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~  197 (260)
T cd06606         119 -SNGIVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEGTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMA  197 (260)
T ss_pred             -HCCccccCCCHHHEEEcCCCCEEEcccccEEecccccccccccCCCCCccccCHhhhcCCCCCchhhHHHHHHHHHHHH
Confidence             8999999999999999999999999999988765543211123346788999999998888999999999999999999


Q ss_pred             hcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          165 AGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       165 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +|..||....        ................     .+..        ..+..+.+++.+||+.||++|||+.|
T Consensus       198 ~g~~p~~~~~--------~~~~~~~~~~~~~~~~-----~~~~--------~~~~~l~~~i~~~l~~~p~~Rp~~~~  253 (260)
T cd06606         198 TGKPPWSELG--------NPMAALYKIGSSGEPP-----EIPE--------HLSEEAKDFLRKCLRRDPKKRPTADE  253 (260)
T ss_pred             hCCCCCCCCC--------chHHHHHhccccCCCc-----CCCc--------ccCHHHHHHHHHhCcCChhhCCCHHH
Confidence            9999986522        1111111111101111     1111        12367899999999999999999854

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=100.00  E-value=7e-34  Score=229.85  Aligned_cols=218  Identities=19%  Similarity=0.177  Sum_probs=155.8

Q ss_pred             HHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC--c---hHHHHHHHHHHHhchhhcCCCC
Q 044022           13 YGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP--L---PRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~--~---~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ...+.+|++++++++|+||+++++++...+..++||||+ +++|.+++....  .   ....++.|++.||.|||   +.
T Consensus        46 ~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~i~~~~~~~~~~~~~~~~~qi~~al~~lH---~~  121 (298)
T cd07841          46 NFTALREIKLLQELKHPNIIGLLDVFGHKSNINLVFEFM-ETDLEKVIKDKSIVLTPADIKSYMLMTLRGLEYLH---SN  121 (298)
T ss_pred             hHHHHHHHHHHhhcCCCCChhhhheeecCCEEEEEEccc-CCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---hC
Confidence            455778999999999999999999999989999999999 899999987654  2   35788999999999999   99


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc-cCCCcchhhHHHHHHHHHHHhc
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI-CVLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      +++|+||+|+||+++.++.++|+|||.+..........  ....++..|+|||.+.+ ..++.++|+||||+++|+|++|
T Consensus       122 ~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~~~--~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~g  199 (298)
T cd07841         122 WILHRDLKPNNLLIASDGVLKLADFGLARSFGSPNRKM--THQVVTRWYRAPELLFGARHYGVGVDMWSVGCIFAELLLR  199 (298)
T ss_pred             CeeecCCChhhEEEcCCCCEEEccceeeeeccCCCccc--cccccceeeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999987654432111  22345778999998854 4578899999999999999999


Q ss_pred             CcccccccccCCCcccchHHHHHHHhh--h---cccCCCCCC---ccccCCCc-hhHHHHHHHHHHHHHHhccCCCCCCC
Q 044022          167 RIHIWDLLKDTHDHGCFFNEYLKNYLE--D---KRFTGIPAP---IIVQDIPC-IEKEQQLHASAQLTLECVNNSPEDRP  237 (241)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~l~~~cl~~~p~~Rp  237 (241)
                      .+||......     ............  .   .........   ......+. ......+..+.+++.+||..||++||
T Consensus       200 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~  274 (298)
T cd07841         200 VPFLPGDSDI-----DQLGKIFEALGTPTEENWPGVTSLPDYVEFKPFPPTPLKQIFPAASDDALDLLQRLLTLNPNKRI  274 (298)
T ss_pred             CccccCCccH-----HHHHHHHHHcCCCchhhhhhcccccccccccccCCcchhhhcccccHHHHHHHHHHhcCCcccCc
Confidence            7777431110     001111000000  0   000000000   00000000 00012346788999999999999999


Q ss_pred             CCCC
Q 044022          238 TMVD  241 (241)
Q Consensus       238 t~~e  241 (241)
                      |+.|
T Consensus       275 s~~e  278 (298)
T cd07841         275 TARQ  278 (298)
T ss_pred             CHHH
Confidence            9864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=100.00  E-value=2.5e-33  Score=231.95  Aligned_cols=154  Identities=19%  Similarity=0.228  Sum_probs=130.3

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeC------CcceEEEEecCCCCHHHhhcCC--CchHHHHHHHHHHHhchhhc
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQT------PIPILVFQSVEYGTLRDCIFGA--PLPRLKIASDIVNSLAYLHF   83 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~------~~~~lv~e~~~~~sL~~~l~~~--~~~~~~~~~~i~~~l~~lh~   83 (241)
                      ....+.+|+.++++++|+||+++++++...      ...++|+||+. ++|.+.+...  ......++.|++.||.||| 
T Consensus        58 ~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~l~~~~~~~~~~ql~~aL~~LH-  135 (353)
T cd07850          58 HAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLEEFQDVYLVMELMD-ANLCQVIQMDLDHERMSYLLYQMLCGIKHLH-  135 (353)
T ss_pred             HHHHHHHHHHHHHhcCCCCCcceeeeeccCCCccccCcEEEEEeccC-CCHHHHHhhcCCHHHHHHHHHHHHHHHHHHH-
Confidence            456778999999999999999999988643      25699999996 6888877643  2245678999999999999 


Q ss_pred             CCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHH
Q 044022           84 GFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL  163 (241)
Q Consensus        84 ~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~  163 (241)
                        +.+++|+||||+||+++.++.++|+|||.+........   .....++..|+|||.+.+..++.++||||||+++|+|
T Consensus       136 --~~gi~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l  210 (353)
T cd07850         136 --SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFM---MTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEM  210 (353)
T ss_pred             --hCCeeeCCCCHHHEEECCCCCEEEccCccceeCCCCCC---CCCCcccccccCHHHHhCCCCCCchhhHhHHHHHHHH
Confidence              89999999999999999999999999999976543321   1223578889999999988999999999999999999


Q ss_pred             HhcCccccc
Q 044022          164 LAGRIHIWD  172 (241)
Q Consensus       164 ~~g~~p~~~  172 (241)
                      ++|+.||..
T Consensus       211 ~~g~~pf~~  219 (353)
T cd07850         211 IRGTVLFPG  219 (353)
T ss_pred             HHCCCCCCC
Confidence            999999954

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=100.00  E-value=1.4e-33  Score=226.39  Aligned_cols=212  Identities=22%  Similarity=0.280  Sum_probs=154.2

Q ss_pred             cccccccccccHHHHHHHHHH-HHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC-----C---chHHHHHH
Q 044022            2 KFYGHEYHRHTYGSCINNITY-AAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA-----P---LPRLKIAS   72 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~-l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~-----~---~~~~~~~~   72 (241)
                      |............++..|+.+ ++.+.||||+++++++...+..++++||++ ++|.+++...     .   .....++.
T Consensus        32 K~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~  110 (283)
T cd06617          32 KRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFYGALFREGDVWICMEVMD-TSLDKFYKKVYDKGLTIPEDILGKIAV  110 (283)
T ss_pred             EEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeeeEEEecCCcEEEEhhhhc-ccHHHHHHHhccCCCCCCHHHHHHHHH
Confidence            444333333345566677765 556689999999999999999999999996 7888776432     1   14568999


Q ss_pred             HHHHHhchhhcCCCC-CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc----cCC
Q 044022           73 DIVNSLAYLHFGFPR-PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI----CVL  147 (241)
Q Consensus        73 ~i~~~l~~lh~~~~~-~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~----~~~  147 (241)
                      |++.|+.|||   ++ +++|+||||+||+++.++.++|+|||.+........   .....++..|+|||.+.+    ..+
T Consensus       111 qi~~~l~~lH---~~~~i~h~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~  184 (283)
T cd06617         111 SIVKALEYLH---SKLSVIHRDVKPSNVLINRNGQVKLCDFGISGYLVDSVA---KTIDAGCKPYMAPERINPELNQKGY  184 (283)
T ss_pred             HHHHHHHHHh---hcCCeecCCCCHHHEEECCCCCEEEeecccccccccccc---cccccCCccccChhhcCCccccccc
Confidence            9999999999   76 999999999999999999999999999875533211   122457888999998865    346


Q ss_pred             CcchhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHH
Q 044022          148 NEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLE  227 (241)
Q Consensus       148 ~~~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  227 (241)
                      +.++|+||||+++|+|++|+.||.....       .. +....... ......+.            ...+..+.+++.+
T Consensus       185 ~~~~Di~slG~~l~~l~~g~~p~~~~~~-------~~-~~~~~~~~-~~~~~~~~------------~~~~~~l~~li~~  243 (283)
T cd06617         185 DVKSDVWSLGITMIELATGRFPYDSWKT-------PF-QQLKQVVE-EPSPQLPA------------EKFSPEFQDFVNK  243 (283)
T ss_pred             CccccchhhHHHHHHHHhCCCCCCcccc-------CH-HHHHHHHh-cCCCCCCc------------cccCHHHHHHHHH
Confidence            7899999999999999999999854211       11 11111111 11111110            1233678999999


Q ss_pred             hccCCCCCCCCCCC
Q 044022          228 CVNNSPEDRPTMVD  241 (241)
Q Consensus       228 cl~~~p~~Rpt~~e  241 (241)
                      ||..+|++|||++|
T Consensus       244 ~l~~~p~~Rp~~~~  257 (283)
T cd06617         244 CLKKNYKERPNYPE  257 (283)
T ss_pred             HccCChhhCcCHHH
Confidence            99999999999853

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=100.00  E-value=2.5e-33  Score=225.98  Aligned_cols=203  Identities=21%  Similarity=0.259  Sum_probs=152.5

Q ss_pred             HHHHHHHHHHHHhc-CCCcccceeeeeeeC-----CcceEEEEecCCCCHHHhhcCC-----C---chHHHHHHHHHHHh
Q 044022           13 YGSCINNITYAAQM-SHNHILKRIGCCLQT-----PIPILVFQSVEYGTLRDCIFGA-----P---LPRLKIASDIVNSL   78 (241)
Q Consensus        13 ~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~-----~~~~lv~e~~~~~sL~~~l~~~-----~---~~~~~~~~~i~~~l   78 (241)
                      ...+.+|+.+++++ +|||++++++++...     +..++|+||+++++|.++++..     .   .....++.+++.||
T Consensus        62 ~~~~~~e~~~l~~l~~h~ni~~~~~~~~~~~~~~~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al  141 (291)
T cd06639          62 DEEIEAEYNILQSLPNHPNVVKFYGMFYKADKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGL  141 (291)
T ss_pred             HHHHHHHHHHHHHhcCCCCeEEEEEEEEeccccCCCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHH
Confidence            45677899999999 899999999998754     3589999999999999887531     1   14567899999999


Q ss_pred             chhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc-----CCCcchhh
Q 044022           79 AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-----VLNEKSNV  153 (241)
Q Consensus        79 ~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-----~~~~~~Di  153 (241)
                      .|||   +.+++|+||||+||+++.++.++|+|||.+.........  .....++..|+|||++...     .++.++|+
T Consensus       142 ~~lH---~~~ivH~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di  216 (291)
T cd06639         142 QHLH---NNRIIHRDVKGNNILLTTEGGVKLVDFGVSAQLTSTRLR--RNTSVGTPFWMAPEVIACEQQYDYSYDARCDV  216 (291)
T ss_pred             HHHH---hCCeeccCCCHHHEEEcCCCCEEEeecccchhccccccc--ccCccCCccccChhhhcCCCCcccccCCccch
Confidence            9999   899999999999999999999999999998765432211  1234578889999988643     36789999


Q ss_pred             HHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCC
Q 044022          154 FSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSP  233 (241)
Q Consensus       154 ~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p  233 (241)
                      ||||+++|+|++|+.||......         +...... .........+           +.....+.+++.+||+.+|
T Consensus       217 ~slGvi~~el~~g~~p~~~~~~~---------~~~~~~~-~~~~~~~~~~-----------~~~~~~l~~li~~~l~~~p  275 (291)
T cd06639         217 WSLGITAIELGDGDPPLFDMHPV---------KTLFKIP-RNPPPTLLHP-----------EKWCRSFNHFISQCLIKDF  275 (291)
T ss_pred             HHHHHHHHHHhhCCCCCCCCcHH---------HHHHHHh-cCCCCCCCcc-----------cccCHHHHHHHHHHhhcCh
Confidence            99999999999999998652110         1111111 1111111000           1223568999999999999


Q ss_pred             CCCCCCCC
Q 044022          234 EDRPTMVD  241 (241)
Q Consensus       234 ~~Rpt~~e  241 (241)
                      ++|||+.|
T Consensus       276 ~~Rps~~~  283 (291)
T cd06639         276 EARPSVTH  283 (291)
T ss_pred             hhCcCHHH
Confidence            99999754

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>PTZ00284 protein kinase; Provisional

Probab=100.00  E-value=1.5e-33  Score=241.19  Aligned_cols=151  Identities=17%  Similarity=0.208  Sum_probs=123.1

Q ss_pred             HHHHHHHHHHHHhcCCC------cccceeeeeeeC-CcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchh
Q 044022           13 YGSCINNITYAAQMSHN------HILKRIGCCLQT-PIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYL   81 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~------~iv~~~~~~~~~-~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~l   81 (241)
                      ...+..|+++++.++|.      +++++++++... +++|+|++++ +++|.+++....    .....++.||+.||.||
T Consensus       169 ~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~~~~~~~~~iv~~~~-g~~l~~~l~~~~~l~~~~~~~i~~qi~~aL~yL  247 (467)
T PTZ00284        169 TRDAKIEIQFMEKVRQADPADRFPLMKIQRYFQNETGHMCIVMPKY-GPCLLDWIMKHGPFSHRHLAQIIFQTGVALDYF  247 (467)
T ss_pred             HHHHHHHHHHHHHHhhcCcccCcceeeeEEEEEcCCceEEEEEecc-CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence            34566788888887654      578888888754 5789999998 688988876542    24678899999999999


Q ss_pred             hcCCC-CCceeccCCCCCeeecCCC----------------CeEEeeccCceecCCCCcceeecccccCCCccCcccccc
Q 044022           82 HFGFP-RPIVLRNFKTQNILFNEEN----------------VAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI  144 (241)
Q Consensus        82 h~~~~-~~ivh~dl~~~nil~~~~~----------------~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~  144 (241)
                      |   . .+|+||||||+|||++.++                .+||+|||.+......     .....||+.|+|||++.+
T Consensus       248 H---~~~gIiHrDlKP~NILl~~~~~~~~~~~~~~~~~~~~~vkl~DfG~~~~~~~~-----~~~~~gt~~Y~APE~~~~  319 (467)
T PTZ00284        248 H---TELHLMHTDLKPENILMETSDTVVDPVTNRALPPDPCRVRICDLGGCCDERHS-----RTAIVSTRHYRSPEVVLG  319 (467)
T ss_pred             H---hcCCeecCCCCHHHEEEecCCcccccccccccCCCCceEEECCCCccccCccc-----cccccCCccccCcHHhhc
Confidence            9   6 5999999999999998765                4999999987532221     134578999999999999


Q ss_pred             cCCCcchhhHHHHHHHHHHHhcCccccc
Q 044022          145 CVLNEKSNVFSFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       145 ~~~~~~~Di~s~G~~~~~~~~g~~p~~~  172 (241)
                      ..++.++|||||||++|||++|+.||..
T Consensus       320 ~~~~~~~DiwSlGvil~elltG~~pf~~  347 (467)
T PTZ00284        320 LGWMYSTDMWSMGCIIYELYTGKLLYDT  347 (467)
T ss_pred             CCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence            9999999999999999999999999954

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5.5e-33  Score=219.20  Aligned_cols=203  Identities=24%  Similarity=0.369  Sum_probs=160.7

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ...+.+.+|++++++++|+|++++++++...+..++++||+++++|.+++.....    ....++.+++.|+.+||   +
T Consensus        41 ~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH---~  117 (254)
T cd06627          41 EALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIILEYAENGSLRQIIKKFGPFPESLVAVYVYQVLQGLAYLH---E  117 (254)
T ss_pred             HHHHHHHHHHHHHHhCCCCCccEEEEEEEeCCEEEEEEecCCCCcHHHHHHhccCCCHHHHHHHHHHHHHHHHHHh---h
Confidence            3456789999999999999999999999999999999999999999998865422    45678999999999999   9


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhc
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      .+++|+||+|+||+++.++.++|+|||.+.........  .....++..|+|||...+...+.++|+||+|+++|++++|
T Consensus       118 ~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~--~~~~~~~~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~l~~g  195 (254)
T cd06627         118 QGVIHRDIKAANILTTKDGVVKLADFGVATKLNDVSKD--DASVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTG  195 (254)
T ss_pred             CCcccCCCCHHHEEECCCCCEEEeccccceecCCCccc--ccccccchhhcCHhhhcCCCCCcchhHHHHHHHHHHHHhC
Confidence            99999999999999999999999999998766543321  1234578889999999877888999999999999999999


Q ss_pred             CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          167 RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ..||.....         ........ ....     +....        ..+..+.+++.+||..+|++|||+.|
T Consensus       196 ~~p~~~~~~---------~~~~~~~~-~~~~-----~~~~~--------~~~~~~~~~i~~~l~~~p~~R~~~~~  247 (254)
T cd06627         196 NPPYYDLNP---------MAALFRIV-QDDH-----PPLPE--------GISPELKDFLMQCFQKDPNLRPTAKQ  247 (254)
T ss_pred             CCCCCCccH---------HHHHHHHh-ccCC-----CCCCC--------CCCHHHHHHHHHHHhCChhhCcCHHH
Confidence            999864210         11111111 1111     11111        12257889999999999999999854

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=100.00  E-value=1.6e-33  Score=225.81  Aligned_cols=218  Identities=19%  Similarity=0.181  Sum_probs=158.1

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC--C---chHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA--P---LPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~--~---~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ....+.+|++++++++|+||+++++++..+...++|+||++ ++|.+++...  .   ..+..++.+++.||.|||   +
T Consensus        41 ~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH---~  116 (283)
T cd05118          41 IPKTALREIKLLKELNHPNIIKLLDVFRHKGDLYLVFEFMD-TDLYKLIKDRQRGLPESLIKSYLYQLLQGLAFCH---S  116 (283)
T ss_pred             hHHHHHHHHHHHHHhcCCCcchHHHhhccCCCEEEEEeccC-CCHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHH---H
Confidence            45678899999999999999999999999999999999997 5888877653  2   246789999999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc-CCCcchhhHHHHHHHHHHHh
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-VLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~~~~~~~  165 (241)
                      .+++|+||+|+||+++.++.++|+|||.+........  ......++..|+|||.+.+. .++.++|+||||+++|++++
T Consensus       117 ~~i~H~dl~p~nili~~~~~~~l~df~~~~~~~~~~~--~~~~~~~~~~~~~PE~~~~~~~~~~~~Di~slG~~l~~l~t  194 (283)
T cd05118         117 HGILHRDLKPENLLINTEGVLKLADFGLARSFGSPVR--PYTHYVVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLS  194 (283)
T ss_pred             CCeeecCcCHHHEEECCCCcEEEeeeeeeEecCCCcc--cccCccCcccccCcHHHhcCCCCCchhHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999876654331  11223567789999998776 78899999999999999999


Q ss_pred             cCcccccccccCCCcccchHHHHHHHhhhc---ccCCCCC------CccccC-CC--chhHHHHHHHHHHHHHHhccCCC
Q 044022          166 GRIHIWDLLKDTHDHGCFFNEYLKNYLEDK---RFTGIPA------PIIVQD-IP--CIEKEQQLHASAQLTLECVNNSP  233 (241)
Q Consensus       166 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~------~~~~~~-~~--~~~~~~~~~~~~~l~~~cl~~~p  233 (241)
                      |+.||.......     ........ ....   .......      ...... ..  .......+..+.+++.+||..||
T Consensus       195 g~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P  268 (283)
T cd05118         195 RRPLFPGKSEID-----QLFKIFRT-LGTPDPEVWPKFTSLARNYKFSFPKKAGMPLPKLFPNASPQALDLLSQMLHYDP  268 (283)
T ss_pred             CCCCCCCCCHHH-----HHHHHHHH-cCCCchHhcccchhhhhhhhhhhccccccCHHHhhhhhCHHHHHHHHHHhccCc
Confidence            999985421100     00000000 0000   0000000      000000 00  00112345788999999999999


Q ss_pred             CCCCCCCC
Q 044022          234 EDRPTMVD  241 (241)
Q Consensus       234 ~~Rpt~~e  241 (241)
                      .+||++.|
T Consensus       269 ~~Rp~~~~  276 (283)
T cd05118         269 HKRITAEQ  276 (283)
T ss_pred             ccCcCHHH
Confidence            99999854

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.3e-33  Score=221.54  Aligned_cols=204  Identities=20%  Similarity=0.215  Sum_probs=155.7

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeC--CcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQT--PIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFG   84 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~--~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~   84 (241)
                      .....+.+|++++++++|+||+++++++...  +.+++++||+++++|.+++.....    ....++.+++.|+.|||  
T Consensus        46 ~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~i~~al~~LH--  123 (264)
T cd06653          46 KEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKLSIFVEYMPGGSIKDQLKAYGALTENVTRRYTRQILQGVSYLH--  123 (264)
T ss_pred             HHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCCCEEEEEEEeCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH--
Confidence            3456788999999999999999999998754  467899999999999998865422    45678999999999999  


Q ss_pred             CCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCc-ceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHH
Q 044022           85 FPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGET-HITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL  163 (241)
Q Consensus        85 ~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~-~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~  163 (241)
                       +.+++|+||+|+||+++.++.++|+|||.+........ ........++..|+|||.+.+..++.++|+||||+++|++
T Consensus       124 -~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l  202 (264)
T cd06653         124 -SNMIVHRDIKGANILRDSAGNVKLGDFGASKRIQTICMSGTGIKSVTGTPYWMSPEVISGEGYGRKADVWSVACTVVEM  202 (264)
T ss_pred             -hCCEecCCCCHHHEEEcCCCCEEECccccccccccccccCccccccCCcccccCHhhhcCCCCCccccHHHHHHHHHHH
Confidence             89999999999999999999999999999876533111 0111224578889999999888889999999999999999


Q ss_pred             HhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          164 LAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       164 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                      ++|+.||.....         .+..........     .+.+..        ..++.+.+++.+||. +|..|||+.
T Consensus       203 ~~g~~p~~~~~~---------~~~~~~~~~~~~-----~~~~p~--------~~~~~~~~~i~~~l~-~~~~r~~~~  256 (264)
T cd06653         203 LTEKPPWAEYEA---------MAAIFKIATQPT-----KPMLPD--------GVSDACRDFLKQIFV-EEKRRPTAE  256 (264)
T ss_pred             HhCCCCCCccCH---------HHHHHHHHcCCC-----CCCCCc--------ccCHHHHHHHHHHhc-CcccCccHH
Confidence            999999964211         111111111110     011111        233678999999999 579999975

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=100.00  E-value=4.1e-33  Score=226.58  Aligned_cols=198  Identities=22%  Similarity=0.363  Sum_probs=152.6

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC--C---chHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA--P---LPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~--~---~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ...++.+|+++++.++|+|++++.+++......++|+||+. |+|.+.+...  .   ..+..++.+++.|+.|||   +
T Consensus        58 ~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH---~  133 (308)
T cd06634          58 KWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCL-GSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLH---S  133 (308)
T ss_pred             HHHHHHHHHHHHHhCCCCCcccEEEEEEcCCeeEEEEEccC-CCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH---h
Confidence            34578899999999999999999999999999999999996 6887766432  1   246778899999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccc---ccCCCcchhhHHHHHHHHHH
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYIS---ICVLNEKSNVFSFGAFLFEL  163 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~---~~~~~~~~Di~s~G~~~~~~  163 (241)
                      .+++|+||+|+||+++.++.++++|||.+......      ....++..|+|||++.   ...++.++||||||+++|++
T Consensus       134 ~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el  207 (308)
T cd06634         134 HNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA------NXFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIEL  207 (308)
T ss_pred             CCcccCCCCHHhEEECCCCcEEECCcccceeecCc------ccccCCccccCHHHHhhcccCCCCcccchHHHHHHHHHH
Confidence            99999999999999999999999999988654332      2235788899999975   34578899999999999999


Q ss_pred             HhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          164 LAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       164 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ++|..||.....         .+......... .     +..       .....+..+.+++.+||..+|.+|||+++
T Consensus       208 ~~g~~p~~~~~~---------~~~~~~~~~~~-~-----~~~-------~~~~~~~~~~~li~~cl~~~P~~Rp~~~~  263 (308)
T cd06634         208 AERKPPLFNMNA---------MSALYHIAQNE-S-----PAL-------QSGHWSEYFRNFVDSCLQKIPQDRPTSEV  263 (308)
T ss_pred             HcCCCCCccccH---------HHHHHHHhhcC-C-----CCc-------CcccccHHHHHHHHHHhhCCcccCCCHHH
Confidence            999999854210         11111111111 0     000       01133467889999999999999999853

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=100.00  E-value=2.7e-33  Score=219.39  Aligned_cols=189  Identities=21%  Similarity=0.179  Sum_probs=148.0

Q ss_pred             HHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCCCCcee
Q 044022           16 CINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFPRPIVL   91 (241)
Q Consensus        16 ~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~~~ivh   91 (241)
                      +.+|...+....||||+++++++...+..++||||+++|+|.+++.....    ....++.+++.||.|||   +.+++|
T Consensus        32 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~ql~~~l~~lH---~~~i~H  108 (237)
T cd05576          32 YSRERLTIIPHCVPNMVCLHKYIVSEDSVFLVLQHAEGGKLWSHISKFLNIPEECVKRWAAEMVVALDALH---REGIVC  108 (237)
T ss_pred             hhhHHHHHHhcCCCceeehhhheecCCeEEEEEecCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH---hCCeec
Confidence            44566666677899999999999999999999999999999998865422    45788999999999999   899999


Q ss_pred             ccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcCcccc
Q 044022           92 RNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIW  171 (241)
Q Consensus        92 ~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~~p~~  171 (241)
                      +||||+||+++.++.++++|||.+.......     ....++..|+|||......++.++|+||+|+++|++++|..|+.
T Consensus       109 ~dlkp~Nil~~~~~~~~l~df~~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~~~~  183 (237)
T cd05576         109 RDLNPNNILLDDRGHIQLTYFSRWSEVEDSC-----DGEAVENMYCAPEVGGISEETEACDWWSLGAILFELLTGKTLVE  183 (237)
T ss_pred             cCCCHHHEEEcCCCCEEEecccchhcccccc-----ccCCcCccccCCcccCCCCCCchhhHHHHHHHHHHHHHCcchhh
Confidence            9999999999999999999999876543321     12245667999999988888999999999999999999998874


Q ss_pred             cccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          172 DLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                      ......               ...  ...   .+..        ..+..+.+++.+||+.||++|||+.
T Consensus       184 ~~~~~~---------------~~~--~~~---~~~~--------~~~~~~~~li~~~l~~dp~~R~~~~  224 (237)
T cd05576         184 CHPSGI---------------NTH--TTL---NIPE--------WVSEEARSLLQQLLQFNPTERLGAG  224 (237)
T ss_pred             cCchhc---------------ccc--ccc---CCcc--------cCCHHHHHHHHHHccCCHHHhcCCC
Confidence            311000               000  000   0111        1235688999999999999999973

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=100.00  E-value=1.5e-33  Score=226.25  Aligned_cols=156  Identities=20%  Similarity=0.284  Sum_probs=131.3

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-------chHHHHHHHHHHHhchhhc
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-------LPRLKIASDIVNSLAYLHF   83 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-------~~~~~~~~~i~~~l~~lh~   83 (241)
                      .....+.+|++++++++|+||+++++++...+..++|+||++ ++|.+++....       .....++.+++.||.||| 
T Consensus        40 ~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH-  117 (284)
T cd07836          40 GTPSTAIREISLMKELKHENIVRLHDVIHTENKLMLVFEYMD-KDLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCH-  117 (284)
T ss_pred             cchHHHHHHHHHHHhhcCCCEeeeeeeEeeCCcEEEEEecCC-ccHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHH-
Confidence            345678899999999999999999999999999999999997 58888775432       146789999999999999 


Q ss_pred             CCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc-CCCcchhhHHHHHHHHH
Q 044022           84 GFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-VLNEKSNVFSFGAFLFE  162 (241)
Q Consensus        84 ~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~~~~  162 (241)
                        +.+++|+||+|+||+++.++.++++|||.+........  ......++..|++||.+.+. .++.++|+||||+++|+
T Consensus       118 --~~~i~h~dl~p~ni~~~~~~~~~l~d~g~~~~~~~~~~--~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~~  193 (284)
T cd07836         118 --ENRVLHRDLKPQNLLINKRGELKLADFGLARAFGIPVN--TFSNEVVTLWYRAPDVLLGSRTYSTSIDIWSVGCIMAE  193 (284)
T ss_pred             --HCCeeeCCCCHHHEEECCCCcEEEeecchhhhhcCCcc--ccccccccccccChHHhcCCCCCCcHHHHHHHHHHHHH
Confidence              89999999999999999999999999999875433221  11223567889999988654 56889999999999999


Q ss_pred             HHhcCccccc
Q 044022          163 LLAGRIHIWD  172 (241)
Q Consensus       163 ~~~g~~p~~~  172 (241)
                      +++|+.||..
T Consensus       194 l~~g~~~~~~  203 (284)
T cd07836         194 MITGRPLFPG  203 (284)
T ss_pred             HHhCCCCCCC
Confidence            9999999865

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=100.00  E-value=4.7e-33  Score=219.84  Aligned_cols=203  Identities=23%  Similarity=0.303  Sum_probs=161.5

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC--------chHHHHHHHHHHHhchhh
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP--------LPRLKIASDIVNSLAYLH   82 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~--------~~~~~~~~~i~~~l~~lh   82 (241)
                      ...+.+.+|++++++++|+|++++.+.+......++|+|++++++|.+++....        .....++.+++.|+.+||
T Consensus        41 ~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh  120 (258)
T cd08215          41 KEREDALNEVKILKKLNHPNIIKYYESFEEKGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLH  120 (258)
T ss_pred             HHHHHHHHHHHHHHhcCCCChhheEEEEecCCEEEEEEEecCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHH
Confidence            456678899999999999999999999999999999999999999999886531        146789999999999999


Q ss_pred             cCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHH
Q 044022           83 FGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFE  162 (241)
Q Consensus        83 ~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~  162 (241)
                         +.+++|+||+|+||+++.++.++|+|||.+........  ......+++.|+|||......++.++|+||+|+++++
T Consensus       121 ---~~~~~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~--~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~~~~  195 (258)
T cd08215         121 ---SRKILHRDIKPQNIFLTSNGLVKLGDFGISKVLSSTVD--LAKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYE  195 (258)
T ss_pred             ---hCCEecccCChHHeEEcCCCcEEECCccceeecccCcc--eecceeeeecccChhHhccCCCCccccHHHHHHHHHH
Confidence               89999999999999999999999999999876544431  2233467888999999988889999999999999999


Q ss_pred             HHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          163 LLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       163 ~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      |++|+.||....         ..+...... ......     +..        ..+..+.+++.+||..+|++|||+.|
T Consensus       196 l~~g~~p~~~~~---------~~~~~~~~~-~~~~~~-----~~~--------~~~~~~~~~i~~~l~~~p~~Rp~~~~  251 (258)
T cd08215         196 LCTLKHPFEGEN---------LLELALKIL-KGQYPP-----IPS--------QYSSELRNLVSSLLQKDPEERPSIAQ  251 (258)
T ss_pred             HHcCCCCCCCCc---------HHHHHHHHh-cCCCCC-----CCC--------CCCHHHHHHHHHHcCCChhhCcCHHH
Confidence            999999985421         111111111 111111     111        12257889999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=100.00  E-value=3.2e-33  Score=229.80  Aligned_cols=167  Identities=22%  Similarity=0.236  Sum_probs=133.1

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCC-----cceEEEEecCCCCHHHhhcCCCc---hHHHHHHH
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTP-----IPILVFQSVEYGTLRDCIFGAPL---PRLKIASD   73 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~-----~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~   73 (241)
                      |.+..........++.+|+.++++++|+||+++++++....     ..++++||+. ++|.+.+.....   ....++.|
T Consensus        36 K~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~l~~~~~~~i~~q  114 (336)
T cd07849          36 KKISPFEHQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESFNDVYIVQELME-TDLYKLIKTQHLSNDHIQYFLYQ  114 (336)
T ss_pred             EEecccccchhHHHHHHHHHHHHhCCCCCcCchhheeecccccccceEEEEehhcc-cCHHHHHhcCCCCHHHHHHHHHH
Confidence            44433233345667889999999999999999999876443     5799999996 688888766433   45678999


Q ss_pred             HHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcce-eecccccCCCccCcccccc-cCCCcch
Q 044022           74 IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHI-TTDRVIGTRGYSAPEYISI-CVLNEKS  151 (241)
Q Consensus        74 i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~-~~~~~~~~~~~~aPE~~~~-~~~~~~~  151 (241)
                      ++.||.+||   +.+++|+||||+||+++.++.++|+|||++.......... ......++..|+|||++.+ ..++.++
T Consensus       115 l~~aL~~LH---~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~  191 (336)
T cd07849         115 ILRGLKYIH---SANVLHRDLKPSNLLLNTNCDLKICDFGLARIADPEHDHTGFLTEYVATRWYRAPEIMLNSKGYTKAI  191 (336)
T ss_pred             HHHHHHHHH---hCCeeccCCCHHHEEECCCCCEEECcccceeeccccccccCCcCCcCcCCCccChHHhhCCCCCCcHH
Confidence            999999999   9999999999999999999999999999987654322111 1122457888999998754 4678999


Q ss_pred             hhHHHHHHHHHHHhcCccccc
Q 044022          152 NVFSFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       152 Di~s~G~~~~~~~~g~~p~~~  172 (241)
                      ||||+|+++|+|++|+.||..
T Consensus       192 DvwslGvil~el~~G~~~f~~  212 (336)
T cd07849         192 DIWSVGCILAEMLSNRPLFPG  212 (336)
T ss_pred             HHHHHHHHHHHHHhCCCCCCC
Confidence            999999999999999999954

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-33  Score=235.27  Aligned_cols=193  Identities=22%  Similarity=0.286  Sum_probs=154.2

Q ss_pred             HHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc---hHHHHHHHHHHHhchhhcCCCCCcee
Q 044022           16 CINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL---PRLKIASDIVNSLAYLHFGFPRPIVL   91 (241)
Q Consensus        16 ~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~i~~~l~~lh~~~~~~ivh   91 (241)
                      -.+|+.++... .||||+++.+.+....+.|+|||.+.++-+.+.+...+.   .+..|+.+|+.|+.|||   .+|+||
T Consensus       362 ~~~e~~~~~~~~~h~niv~~~~v~~~~~~~~~v~e~l~g~ell~ri~~~~~~~~e~~~w~~~lv~Av~~LH---~~gvvh  438 (612)
T KOG0603|consen  362 NQDEIPISLLVRDHPNIVKSHDVYEDGKEIYLVMELLDGGELLRRIRSKPEFCSEASQWAAELVSAVDYLH---EQGVVH  438 (612)
T ss_pred             cccccchhhhhcCCCcceeecceecCCceeeeeehhccccHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH---hcCeee
Confidence            44667666555 799999999999999999999999999888887765533   34569999999999999   999999


Q ss_pred             ccCCCCCeee-cCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcCccc
Q 044022           92 RNFKTQNILF-NEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHI  170 (241)
Q Consensus        92 ~dl~~~nil~-~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~~p~  170 (241)
                      |||||.|||+ +..++++|+|||.+......     .....-|..|.|||++....+++++|+||||+++|+|++|+.||
T Consensus       439 RDLkp~NIL~~~~~g~lrltyFG~a~~~~~~-----~~tp~~t~~y~APEvl~~~~yt~acD~WSLGvlLy~ML~G~tp~  513 (612)
T KOG0603|consen  439 RDLKPGNILLDGSAGHLRLTYFGFWSELERS-----CDTPALTLQYVAPEVLAIQEYTEACDWWSLGVLLYEMLTGRTLF  513 (612)
T ss_pred             cCCChhheeecCCCCcEEEEEechhhhCchh-----hcccchhhcccChhhhccCCCCcchhhHHHHHHHHHHHhCCCcc
Confidence            9999999999 68999999999999776554     12335577899999999889999999999999999999999999


Q ss_pred             ccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          171 WDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ....+.        .+ .......+.+.                +.-+...++|+.+||+.||.+|||+.+
T Consensus       514 ~~~P~~--------~e-i~~~i~~~~~s----------------~~vS~~AKdLl~~LL~~dP~~Rl~~~~  559 (612)
T KOG0603|consen  514 AAHPAG--------IE-IHTRIQMPKFS----------------ECVSDEAKDLLQQLLQVDPALRLGADE  559 (612)
T ss_pred             ccCCch--------HH-HHHhhcCCccc----------------cccCHHHHHHHHHhccCChhhCcChhh
Confidence            652221        11 11111111111                234467899999999999999999864

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=100.00  E-value=7.2e-33  Score=220.75  Aligned_cols=184  Identities=18%  Similarity=0.210  Sum_probs=145.3

Q ss_pred             CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeec
Q 044022           27 SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFN  102 (241)
Q Consensus        27 ~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~  102 (241)
                      +|+|++++++++...+..++||||+++++|.+++.....    ....++.|++.|+.|||   +.+++|+||+|+||+++
T Consensus        67 ~h~~iv~~~~~~~~~~~~~iv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~nil~~  143 (267)
T PHA03390         67 DNPNFIKLYYSVTTLKGHVLIMDYIKDGDLFDLLKKEGKLSEAEVKKIIRQLVEALNDLH---KHNIIHNDIKLENVLYD  143 (267)
T ss_pred             cCCCEEEEEEEEecCCeeEEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEEe
Confidence            799999999999999999999999999999999876522    46789999999999999   89999999999999999


Q ss_pred             CCC-CeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcCcccccccccCCCcc
Q 044022          103 EEN-VAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHG  181 (241)
Q Consensus       103 ~~~-~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~  181 (241)
                      .++ .++|+|||.+.......      ...++..|+|||++.+..++.++|+||||+++|+|++|+.||.......    
T Consensus       144 ~~~~~~~l~dfg~~~~~~~~~------~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~----  213 (267)
T PHA03390        144 RAKDRIYLCDYGLCKIIGTPS------CYDGTLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKEDEDEE----  213 (267)
T ss_pred             CCCCeEEEecCccceecCCCc------cCCCCCcccChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCcch----
Confidence            998 99999999987654332      2357889999999998889999999999999999999999996422111    


Q ss_pred             cchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCC
Q 044022          182 CFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM  239 (241)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~  239 (241)
                      .....+....  ..   ..   ....        ..++.+.+++.+||+.+|.+||+.
T Consensus       214 ~~~~~~~~~~--~~---~~---~~~~--------~~~~~~~~li~~~l~~~p~~R~~~  255 (267)
T PHA03390        214 LDLESLLKRQ--QK---KL---PFIK--------NVSKNANDFVQSMLKYNINYRLTN  255 (267)
T ss_pred             hhHHHHHHhh--cc---cC---Cccc--------ccCHHHHHHHHHHhccChhhCCch
Confidence            0011111110  00   00   0000        233678999999999999999964

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=100.00  E-value=2e-33  Score=230.88  Aligned_cols=158  Identities=18%  Similarity=0.244  Sum_probs=130.5

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeee----CCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhh
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQ----TPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLH   82 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~----~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh   82 (241)
                      .....+.+|+.++++++||||+++++++..    ....++|+||+. ++|.+++.....    ....++.+++.||.|||
T Consensus        46 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH  124 (334)
T cd07855          46 TLAKRTLRELKILRHFKHDNIIAIRDILRPPGADFKDVYVVMDLME-SDLHHIIHSDQPLTEEHIRYFLYQLLRGLKYIH  124 (334)
T ss_pred             cchHHHHHHHHHHHhcCCCCccCHHHhccccCCCCceEEEEEehhh-hhHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            456678899999999999999999998863    346799999996 689998865432    46788999999999999


Q ss_pred             cCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcc--eeecccccCCCccCcccccc-cCCCcchhhHHHHHH
Q 044022           83 FGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH--ITTDRVIGTRGYSAPEYISI-CVLNEKSNVFSFGAF  159 (241)
Q Consensus        83 ~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~--~~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~  159 (241)
                         +.+++|+||||+||+++.++.++|+|||.+.........  .......++..|+|||.+.+ ..++.++|+||||++
T Consensus       125 ---~~~ivH~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~  201 (334)
T cd07855         125 ---SANVIHRDLKPSNLLVNEDCELRIGDFGMARGLSSSPTEHKYFMTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCI  201 (334)
T ss_pred             ---HCCeecCCCCHHHEEEcCCCcEEecccccceeecccCcCCCcccccccccccccChHHhcCCcccccccchHHHHHH
Confidence               899999999999999999999999999998765432211  11123467888999999865 457899999999999


Q ss_pred             HHHHHhcCccccc
Q 044022          160 LFELLAGRIHIWD  172 (241)
Q Consensus       160 ~~~~~~g~~p~~~  172 (241)
                      +|+|++|+.||..
T Consensus       202 l~el~~g~~pf~~  214 (334)
T cd07855         202 FAEMLGRRQLFPG  214 (334)
T ss_pred             HHHHHcCCCccCC
Confidence            9999999999954

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=100.00  E-value=4.2e-33  Score=223.47  Aligned_cols=196  Identities=18%  Similarity=0.206  Sum_probs=148.1

Q ss_pred             HHHHHHHHHHh---cCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCCC
Q 044022           15 SCINNITYAAQ---MSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        15 ~~~~e~~~l~~---l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      .+.+|..+++.   .+|||++.+++++...+..++||||+++++|.+++.....    ....++.|++.||.|||   +.
T Consensus        40 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~l~~~~~~~i~~qi~~al~~lH---~~  116 (279)
T cd05633          40 LALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFILDLMNGGDLHYHLSQHGVFSEKEMRFYATEIILGLEHMH---NR  116 (279)
T ss_pred             HHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HC
Confidence            34555544443   4799999999999998999999999999999998865422    46778999999999999   89


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc-cCCCcchhhHHHHHHHHHHHhc
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI-CVLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      +++|+||||+||+++.++.++++|||.+........    ....++..|+|||.+.. ..++.++|+||||+++|++++|
T Consensus       117 ~ivH~dikp~Nil~~~~~~~~l~dfg~~~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g  192 (279)
T cd05633         117 FVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKP----HASVGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRG  192 (279)
T ss_pred             CcCCCCCCHHHEEECCCCCEEEccCCcceeccccCc----cCcCCCcCccCHHHhcCCCCCCchhhhHHHHHHHHHHHhC
Confidence            999999999999999999999999999865433221    22358899999998863 5678999999999999999999


Q ss_pred             CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCC
Q 044022          167 RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT  238 (241)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt  238 (241)
                      ..||.......       ..........      ....+..        ..+..+.+++.+||..||++||+
T Consensus       193 ~~pf~~~~~~~-------~~~~~~~~~~------~~~~~~~--------~~~~~~~~li~~~l~~~p~~R~~  243 (279)
T cd05633         193 HSPFRQHKTKD-------KHEIDRMTLT------VNVELPD--------SFSPELKSLLEGLLQRDVSKRLG  243 (279)
T ss_pred             CCCcCCCCCcC-------HHHHHHHhhc------CCcCCcc--------ccCHHHHHHHHHHhcCCHHHhcC
Confidence            99996521110       0111111000      0011111        23367889999999999999995

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=100.00  E-value=4.3e-33  Score=223.73  Aligned_cols=156  Identities=21%  Similarity=0.271  Sum_probs=131.4

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeC--CcceEEEEecCCCCHHHhhcCC--Cc---hHHHHHHHHHHHhchhhcC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQT--PIPILVFQSVEYGTLRDCIFGA--PL---PRLKIASDIVNSLAYLHFG   84 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~--~~~~lv~e~~~~~sL~~~l~~~--~~---~~~~~~~~i~~~l~~lh~~   84 (241)
                      ....+.+|++++++++|+|++++++++...  +..++|+||++ ++|.+++...  ..   ....++.+++.|+++||  
T Consensus        41 ~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH--  117 (287)
T cd07840          41 FPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMVFEYMD-HDLTGLLDSPEVKFTESQIKCYMKQLLEGLQYLH--  117 (287)
T ss_pred             chHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEEecccc-ccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH--
Confidence            345688999999999999999999999887  78999999997 5898887654  11   46789999999999999  


Q ss_pred             CCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc-cCCCcchhhHHHHHHHHHH
Q 044022           85 FPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI-CVLNEKSNVFSFGAFLFEL  163 (241)
Q Consensus        85 ~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~~~~~  163 (241)
                       +.+++|+||+|+||+++.++.++|+|||.+........ .......++..|+|||.+.+ ..++.++||||||+++|+|
T Consensus       118 -~~~~~h~dl~p~nil~~~~~~~~l~d~g~~~~~~~~~~-~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el  195 (287)
T cd07840         118 -SNGILHRDIKGSNILINNDGVLKLADFGLARPYTKRNS-ADYTNRVITLWYRPPELLLGATRYGPEVDMWSVGCILAEL  195 (287)
T ss_pred             -HCCceeccCcHHHeEEcCCCCEEEccccceeeccCCCc-ccccccccccccCCceeeEccccCChHHHHHHHHHHHHHH
Confidence             89999999999999999999999999999876654321 11122356778999998765 3578999999999999999


Q ss_pred             HhcCccccc
Q 044022          164 LAGRIHIWD  172 (241)
Q Consensus       164 ~~g~~p~~~  172 (241)
                      ++|+.||..
T Consensus       196 ~t~~~p~~~  204 (287)
T cd07840         196 FLGKPIFQG  204 (287)
T ss_pred             HhCCCCCCC
Confidence            999999854

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=100.00  E-value=1.1e-32  Score=224.44  Aligned_cols=198  Identities=22%  Similarity=0.351  Sum_probs=152.3

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC--C---chHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA--P---LPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~--~---~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ..+.+.+|+++++.++|||++++++++......++|+||+. ++|.+++...  .   ..+..++.+++.|+.|||   +
T Consensus        64 ~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~l~~~~~~~~~~qi~~al~~LH---~  139 (313)
T cd06633          64 KWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWLVMEYCL-GSASDLLEVHKKPLQEVEIAAITHGALQGLAYLH---S  139 (313)
T ss_pred             HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEEecCC-CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            34578899999999999999999999999999999999996 6787776432  1   246778999999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccc---ccCCCcchhhHHHHHHHHHH
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYIS---ICVLNEKSNVFSFGAFLFEL  163 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~---~~~~~~~~Di~s~G~~~~~~  163 (241)
                      .+++|+||+|+||+++.++.++|+|||.+......      +...++..|+|||++.   ...++.++|+||||+++|+|
T Consensus       140 ~gi~H~dl~p~nili~~~~~~kL~dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~slGvil~el  213 (313)
T cd06633         140 HNMIHRDIKAGNILLTEPGQVKLADFGSASKSSPA------NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIEL  213 (313)
T ss_pred             CCeecCCCChhhEEECCCCCEEEeecCCCcccCCC------CCccccccccChhhccccCCCCCCchhhHHHHHHHHHHH
Confidence            99999999999999999999999999987543221      2346788899999984   35678899999999999999


Q ss_pred             HhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          164 LAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       164 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ++|..||.....         ........... ...    ....        ..+..+.+++.+||+.+|.+|||+.|
T Consensus       214 ~~g~~p~~~~~~---------~~~~~~~~~~~-~~~----~~~~--------~~~~~l~~li~~~l~~~P~~Rp~~~~  269 (313)
T cd06633         214 AERKPPLFNMNA---------MSALYHIAQND-SPT----LQSN--------EWTDSFRGFVDYCLQKIPQERPASAE  269 (313)
T ss_pred             HhCCCCCCCCCh---------HHHHHHHHhcC-CCC----CCcc--------ccCHHHHHHHHHHccCChhhCcCHHH
Confidence            999999865211         11111111110 000    0001        12246889999999999999999853

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=3.6e-33  Score=225.50  Aligned_cols=228  Identities=22%  Similarity=0.264  Sum_probs=167.4

Q ss_pred             CcccccccccccHHHHHHHHHHHHhc--CCCcccceeeeeeeCC----cceEEEEecCCCCHHHhhcCCCc---hHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQM--SHNHILKRIGCCLQTP----IPILVFQSVEYGTLRDCIFGAPL---PRLKIA   71 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l--~h~~iv~~~~~~~~~~----~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~   71 (241)
                      ||+|.-    +..++|++|-+|....  +|+||+++++.-....    .+++|++|.+.|||.++|+.+..   ...+++
T Consensus       238 VKifp~----~~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~eywLVt~fh~kGsL~dyL~~ntisw~~~cria  313 (534)
T KOG3653|consen  238 VKIFPE----QEKQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRMEYWLVTEFHPKGSLCDYLKANTISWNSLCRIA  313 (534)
T ss_pred             EEecCH----HHHHHHHhHHHHHhccCccchhHHHhhchhccCCccccceeEEeeeccCCcHHHHHHhccccHHHHHHHH
Confidence            455543    5677899988888765  8999999999876554    78999999999999999999866   356899


Q ss_pred             HHHHHHhchhhc------CCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc
Q 044022           72 SDIVNSLAYLHF------GFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC  145 (241)
Q Consensus        72 ~~i~~~l~~lh~------~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~  145 (241)
                      ..+++||+|||+      ..+.+|+|||||.+|||+..++++-|+|||++..+.........-..+||..|||||++.+.
T Consensus       314 ~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIaDFGLAl~~~p~~~~~d~~~qVGT~RYMAPEvLEga  393 (534)
T KOG3653|consen  314 ESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIADFGLALRLEPGKPQGDTHGQVGTRRYMAPEVLEGA  393 (534)
T ss_pred             HHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEEeeccceeEEecCCCCCcchhhhhhhhhhcCHHHHhhh
Confidence            999999999995      33457999999999999999999999999999887765444334457899999999999765


Q ss_pred             C-CC-----cchhhHHHHHHHHHHHhcCcccc-------cccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCch
Q 044022          146 V-LN-----EKSNVFSFGAFLFELLAGRIHIW-------DLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCI  212 (241)
Q Consensus       146 ~-~~-----~~~Di~s~G~~~~~~~~g~~p~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (241)
                      . +.     .+.||||+|.++|||+++-.-++       .+.-+.+.++..-.+.++...-.....+.....+...    
T Consensus       394 inl~d~~Afkr~DvYamgLVLWEi~SRC~~~~~~~vp~Yqlpfe~evG~hPt~e~mq~~VV~kK~RP~~p~~W~~h----  469 (534)
T KOG3653|consen  394 INLQDRDAFKRIDVYAMGLVLWEIASRCTDADPGPVPEYQLPFEAEVGNHPTLEEMQELVVRKKQRPKIPDAWRKH----  469 (534)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcccCchhHHhcCCCCHHHHHHHHHhhccCCCChhhhhcC----
Confidence            2 22     36899999999999999643221       1111111122222333444433333323332232222    


Q ss_pred             hHHHHHHHHHHHHHHhccCCCCCCCCC
Q 044022          213 EKEQQLHASAQLTLECVNNSPEDRPTM  239 (241)
Q Consensus       213 ~~~~~~~~~~~l~~~cl~~~p~~Rpt~  239 (241)
                         .....+.+.+..||+.||+.|.|+
T Consensus       470 ---~~~~~l~et~EeCWDhDaeARLTA  493 (534)
T KOG3653|consen  470 ---AGMAVLCETIEECWDHDAEARLTA  493 (534)
T ss_pred             ---ccHHHHHHHHHHHcCCchhhhhhh
Confidence               334678999999999999999997

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=100.00  E-value=4.6e-33  Score=224.98  Aligned_cols=213  Identities=20%  Similarity=0.272  Sum_probs=153.7

Q ss_pred             cccccccccccHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC--C---chHHHHHHHHH
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA--P---LPRLKIASDIV   75 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~--~---~~~~~~~~~i~   75 (241)
                      |.+..........++.+|+.++.+. .|+||+++++++......+++|||+. ++|.+++...  .   ..+..++.+++
T Consensus        46 K~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~-~~l~~l~~~~~~~l~~~~~~~i~~~i~  124 (296)
T cd06618          46 KQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYFITDSDVFICMELMS-TCLDKLLKRIQGPIPEDILGKMTVAIV  124 (296)
T ss_pred             EEEeccCChHHHHHHHHHHHHHHhccCCCchHhhheeeecCCeEEEEeeccC-cCHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            4443333333456677788777777 49999999999999999999999985 5777766442  1   13568999999


Q ss_pred             HHhchhhcCCC-CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccC----CCcc
Q 044022           76 NSLAYLHFGFP-RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICV----LNEK  150 (241)
Q Consensus        76 ~~l~~lh~~~~-~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~----~~~~  150 (241)
                      .|+.|||   + .+++|+||+|+||+++.++.++|+|||.+.........   ....++..|+|||.+.+..    ++.+
T Consensus       125 ~~l~~lH---~~~~i~H~dl~p~nill~~~~~~kL~dfg~~~~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~~~~  198 (296)
T cd06618         125 KALHYLK---EKHGVIHRDVKPSNILLDASGNVKLCDFGISGRLVDSKAK---TRSAGCAAYMAPERIDPPDPNPKYDIR  198 (296)
T ss_pred             HHHHHHH---hhCCEecCCCcHHHEEEcCCCCEEECccccchhccCCCcc---cCCCCCccccCHhhcCCCCCccccccc
Confidence            9999999   6 58999999999999999999999999998755432221   2234677899999987553    7889


Q ss_pred             hhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhcc
Q 044022          151 SNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVN  230 (241)
Q Consensus       151 ~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~  230 (241)
                      +|+||||+++|+|++|+.||......        .+......... .......   .        ..+..+.+++.+||.
T Consensus       199 ~Di~slG~il~el~~g~~p~~~~~~~--------~~~~~~~~~~~-~~~~~~~---~--------~~~~~l~~li~~~l~  258 (296)
T cd06618         199 ADVWSLGISLVELATGQFPYKNCKTE--------FEVLTKILQEE-PPSLPPN---E--------GFSPDFCSFVDLCLT  258 (296)
T ss_pred             hhHHHHHHHHHHHHhCCCCCCcchhH--------HHHHHHHhcCC-CCCCCCC---C--------CCCHHHHHHHHHHcc
Confidence            99999999999999999998541100        11111111111 0001100   0        123578999999999


Q ss_pred             CCCCCCCCCCC
Q 044022          231 NSPEDRPTMVD  241 (241)
Q Consensus       231 ~~p~~Rpt~~e  241 (241)
                      .||++|||+++
T Consensus       259 ~~p~~Rp~~~~  269 (296)
T cd06618         259 KDHRKRPKYRE  269 (296)
T ss_pred             CChhhCCCHHH
Confidence            99999999864

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-33  Score=236.09  Aligned_cols=166  Identities=23%  Similarity=0.333  Sum_probs=145.0

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCC------cceEEEEecCCCCHHHhhcCCCc-------hH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTP------IPILVFQSVEYGTLRDCIFGAPL-------PR   67 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~------~~~lv~e~~~~~sL~~~l~~~~~-------~~   67 (241)
                      ||.++.+++....+...+|+++|++|+|+|||++.++=....      ...+|||||.+|||...++..+.       ..
T Consensus        43 vK~~~~~~~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~~vlvmEyC~gGsL~~~L~~PEN~~GLpE~e~  122 (732)
T KOG4250|consen   43 VKTFNKESSLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRLPVLVMEYCSGGSLRKVLNSPENAYGLPESEF  122 (732)
T ss_pred             HHhhhhhcccchHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccccceEEEeecCCCcHHHHhcCcccccCCCHHHH
Confidence            688888888888899999999999999999999998865433      56899999999999999987532       46


Q ss_pred             HHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCC----CCeEEeeccCceecCCCCcceeecccccCCCccCccccc
Q 044022           68 LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEE----NVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYIS  143 (241)
Q Consensus        68 ~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~----~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~  143 (241)
                      +.++.+++.|+.|||   +++|+||||||.||++...    ...||+|||.|+.+...+.   ..+.+||..|++||...
T Consensus       123 l~lL~d~~~al~~Lr---En~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~Arel~d~s~---~~S~vGT~~YLhPel~E  196 (732)
T KOG4250|consen  123 LDLLSDLVSALRHLR---ENGIVHRDLKPGNIVLQIGEDGQSIYKLTDFGAARELDDNSL---FTSLVGTEEYLHPELYE  196 (732)
T ss_pred             HHHHHHHHHHHHHHH---HcCceeccCCCCcEEEeecCCCceEEeeecccccccCCCCCe---eeeecCchhhcChHHHh
Confidence            788999999999999   9999999999999998532    3569999999999887763   34578999999999998


Q ss_pred             -ccCCCcchhhHHHHHHHHHHHhcCccccc
Q 044022          144 -ICVLNEKSNVFSFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       144 -~~~~~~~~Di~s~G~~~~~~~~g~~p~~~  172 (241)
                       ...++..+|.|||||++|+.+||..||-.
T Consensus       197 ~q~~y~~tVDLWS~GvtlY~caTG~lPF~p  226 (732)
T KOG4250|consen  197 RQKKYTATVDLWSFGVTLYECATGELPFIP  226 (732)
T ss_pred             hccCcCceeehhhhhhHHHHHhccCCCCCc
Confidence             48889999999999999999999999954

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=100.00  E-value=9.9e-33  Score=222.14  Aligned_cols=205  Identities=20%  Similarity=0.187  Sum_probs=156.0

Q ss_pred             cHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ..+++.+|++++.++ +||||+++++++......++||||+.+++|.+++.....    ....++.|++.||.|||   +
T Consensus        47 ~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH---~  123 (288)
T cd05583          47 TAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTKLHLILDYVNGGELFTHLYQREHFTESEVRVYIAEIVLALDHLH---Q  123 (288)
T ss_pred             HHHHHHHHHHHHHhccCCcchhhhheeeecCCEEEEEEecCCCCcHHHHHhhcCCcCHHHHHHHHHHHHHHHHHHH---H
Confidence            456788999999999 599999999999999999999999999999998765421    45678889999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccC--CCcchhhHHHHHHHHHHH
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICV--LNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~--~~~~~Di~s~G~~~~~~~  164 (241)
                      .+++|+||+|.||+++.++.++++|||++.......... .....++..|+|||.+.+..  .+.++|+||||+++|+|+
T Consensus       124 ~~~~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el~  202 (288)
T cd05583         124 LGIIYRDIKLENILLDSEGHVVLTDFGLSKEFLAEEEER-AYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELL  202 (288)
T ss_pred             CCeeccCCCHHHeEECCCCCEEEEECccccccccccccc-cccccCCccccCHHHhcCCCCCCcchhhhHHHHHHHHHHH
Confidence            999999999999999999999999999887544332111 12235788999999987654  678999999999999999


Q ss_pred             hcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          165 AGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       165 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                      +|..||......     ....+.........       .....        ..+..+.+++.+||+.||++|||+.
T Consensus       203 tg~~p~~~~~~~-----~~~~~~~~~~~~~~-------~~~~~--------~~~~~l~~li~~~l~~~p~~R~t~~  258 (288)
T cd05583         203 TGASPFTVDGEQ-----NSQSEISRRILKSK-------PPFPK--------TMSAEARDFIQKLLEKDPKKRLGAN  258 (288)
T ss_pred             hCCCCcccCccc-----chHHHHHHHHHccC-------CCCCc--------ccCHHHHHHHHHHhcCCHhhccCcc
Confidence            999998531110     01111111111110       00111        1225688999999999999999975

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=100.00  E-value=5.2e-33  Score=223.04  Aligned_cols=164  Identities=20%  Similarity=0.237  Sum_probs=134.0

Q ss_pred             cccccccccccHHHHHHHHHHHHhcC-CCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC------chHHHHHHHH
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMS-HNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP------LPRLKIASDI   74 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~-h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~------~~~~~~~~~i   74 (241)
                      |.+.............+|+..+++++ |+|++++++++...+..++||||+ +++|.+.+....      .....++.++
T Consensus        30 k~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~l  108 (283)
T cd07830          30 KKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVFRENDELYFVFEYM-EGNLYQLMKDRKGKPFSESVIRSIIYQI  108 (283)
T ss_pred             EEehhhccchhHHHHHHHHHHHHhccCCCCchhHHHHhhcCCcEEEEEecC-CCCHHHHHHhcccccCCHHHHHHHHHHH
Confidence            44433333333445567999999998 999999999999999999999999 789998876542      1467889999


Q ss_pred             HHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc-cCCCcchhh
Q 044022           75 VNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI-CVLNEKSNV  153 (241)
Q Consensus        75 ~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-~~~~~~~Di  153 (241)
                      +.+|.|||   +.+++|+||+|+||+++.++.++|+|||.+.........   ....++..|+|||.+.. ..++.++|+
T Consensus       109 ~~~l~~Lh---~~~i~H~dl~~~ni~i~~~~~~~l~d~~~~~~~~~~~~~---~~~~~~~~~~aPE~~~~~~~~~~~~Di  182 (283)
T cd07830         109 LQGLAHIH---KHGFFHRDLKPENLLVSGPEVVKIADFGLAREIRSRPPY---TDYVSTRWYRAPEILLRSTSYSSPVDI  182 (283)
T ss_pred             HHHHHHHH---HCCcccCCCChhhEEEcCCCCEEEeecccceeccCCCCc---CCCCCcccccCceeeecCcCcCCccch
Confidence            99999999   899999999999999999999999999998765443221   22357788999998754 457899999


Q ss_pred             HHHHHHHHHHHhcCccccc
Q 044022          154 FSFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       154 ~s~G~~~~~~~~g~~p~~~  172 (241)
                      ||||++++++++|+.||..
T Consensus       183 ~s~G~~l~el~~g~~~~~~  201 (283)
T cd07830         183 WALGCIMAELYTLRPLFPG  201 (283)
T ss_pred             hhHHHHHHHHHhCCCccCC
Confidence            9999999999999999854

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=100.00  E-value=1.2e-32  Score=221.77  Aligned_cols=204  Identities=19%  Similarity=0.178  Sum_probs=154.3

Q ss_pred             cHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ..+++.+|++++.++ .|+||+++++++..++..++|+||+++++|.+++.....    ....++.+++.||.|||   +
T Consensus        47 ~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~al~~lH---~  123 (290)
T cd05613          47 TTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKLHLILDYINGGELFTHLSQRERFKEQEVQIYSGEIVLALEHLH---K  123 (290)
T ss_pred             HHHHHHHHHHHHHhcccCCChhceeeEeecCCeEEEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---h
Confidence            346788899999999 589999999999988899999999999999998865432    34567779999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc--CCCcchhhHHHHHHHHHHH
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC--VLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~--~~~~~~Di~s~G~~~~~~~  164 (241)
                      .+++|+||+|+||+++.++.++|+|||.+......... ......++..|+|||.+.+.  .++.++|+||||+++|+++
T Consensus       124 ~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~~l~~ll  202 (290)
T cd05613         124 LGIIYRDIKLENILLDSNGHVVLTDFGLSKEFHEDEVE-RAYSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELL  202 (290)
T ss_pred             CCeeccCCCHHHeEECCCCCEEEeeCccceeccccccc-ccccccCCcccCChhhccCCCCCCCccccHHHHHHHHHHHh
Confidence            99999999999999999999999999998765432211 11234578899999998753  4678999999999999999


Q ss_pred             hcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCC
Q 044022          165 AGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM  239 (241)
Q Consensus       165 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~  239 (241)
                      +|..||.....     .....+.........       +....        ..+..+.+++.+||+.||++||+.
T Consensus       203 ~g~~p~~~~~~-----~~~~~~~~~~~~~~~-------~~~~~--------~~~~~~~~ll~~~l~~~p~~R~~~  257 (290)
T cd05613         203 TGASPFTVDGE-----KNSQAEISRRILKSE-------PPYPQ--------EMSALAKDIIQRLLMKDPKKRLGC  257 (290)
T ss_pred             cCCCCCCcCCc-----cccHHHHHHHhhccC-------CCCCc--------cCCHHHHHHHHHHhcCCHHHhcCC
Confidence            99999853111     111111111111111       00111        123578899999999999999854

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=100.00  E-value=9.4e-33  Score=222.91  Aligned_cols=155  Identities=21%  Similarity=0.270  Sum_probs=127.9

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc------hHHHHHHHHHHHhchhhcCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL------PRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~------~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ..+.+.+|++++++++|+||+++++++......++|+||++ ++|.+.+.....      ....++.+|+.||.|||   
T Consensus        44 ~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH---  119 (294)
T PLN00009         44 VPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFEYLD-LDLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCH---  119 (294)
T ss_pred             chHHHHHHHHHHHhccCCCEeeEEEEEecCCeEEEEEeccc-ccHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHH---
Confidence            34678899999999999999999999999999999999996 688777644321      34578899999999999   


Q ss_pred             CCCceeccCCCCCeeecC-CCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc-CCCcchhhHHHHHHHHHH
Q 044022           86 PRPIVLRNFKTQNILFNE-ENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-VLNEKSNVFSFGAFLFEL  163 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~-~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~~~~~  163 (241)
                      +++++|+||+|+||+++. ++.+||+|||.+........  ......++..|+|||++.+. .++.++|+||||+++|++
T Consensus       120 ~~~i~H~dl~p~nill~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~i~~~l  197 (294)
T PLN00009        120 SHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVR--TFTHEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEM  197 (294)
T ss_pred             hCCeeCCCCCcceEEEECCCCEEEEcccccccccCCCcc--ccccCceeecccCHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence            899999999999999985 45789999999875433211  11223567889999988654 578899999999999999


Q ss_pred             HhcCccccc
Q 044022          164 LAGRIHIWD  172 (241)
Q Consensus       164 ~~g~~p~~~  172 (241)
                      ++|..||..
T Consensus       198 ~tg~~pf~~  206 (294)
T PLN00009        198 VNQKPLFPG  206 (294)
T ss_pred             HhCCCCCCC
Confidence            999999954

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=100.00  E-value=9.1e-33  Score=224.34  Aligned_cols=157  Identities=19%  Similarity=0.241  Sum_probs=127.4

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCC--------cceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHHHh
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTP--------IPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVNSL   78 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--------~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~~l   78 (241)
                      ....+.+|++++++++||||+++++++...+        ..++|+||+. ++|.+.+....     .....++.|++.||
T Consensus        54 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~i~~qi~~al  132 (310)
T cd07865          54 FPITALREIKILQLLKHENVVNLIEICRTKATPYNRYKGSFYLVFEFCE-HDLAGLLSNKNVKFTLSEIKKVMKMLLNGL  132 (310)
T ss_pred             chhHHHHHHHHHHhCCCCCccceEEEEecccccccCCCceEEEEEcCCC-cCHHHHHHhcccCCCHHHHHHHHHHHHHHH
Confidence            3446678999999999999999999987654        3499999996 58888775432     14678999999999


Q ss_pred             chhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcc--eeecccccCCCccCccccccc-CCCcchhhHH
Q 044022           79 AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH--ITTDRVIGTRGYSAPEYISIC-VLNEKSNVFS  155 (241)
Q Consensus        79 ~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~--~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s  155 (241)
                      .|||   +.+++|+||+|+||+++.++.++|+|||.+.........  .......++..|+|||.+.+. .++.++|+||
T Consensus       133 ~~lH---~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~s  209 (310)
T cd07865         133 YYIH---RNKILHRDMKAANILITKDGILKLADFGLARAFSLSKNSKPNRYTNRVVTLWYRPPELLLGERDYGPPIDMWG  209 (310)
T ss_pred             HHHH---HCCeeccCCCHHHEEECCCCcEEECcCCCcccccCCcccCCCCccCcccCccccCcHHhcCCcccCchhhhHH
Confidence            9999   899999999999999999999999999998765432211  111223567889999988654 4688999999


Q ss_pred             HHHHHHHHHhcCccccc
Q 044022          156 FGAFLFELLAGRIHIWD  172 (241)
Q Consensus       156 ~G~~~~~~~~g~~p~~~  172 (241)
                      ||+++|+|++|..||..
T Consensus       210 lG~~l~el~t~~~~~~~  226 (310)
T cd07865         210 AGCIMAEMWTRSPIMQG  226 (310)
T ss_pred             HHHHHHHHHhCCCCCCC
Confidence            99999999999999854

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=100.00  E-value=1.7e-32  Score=225.65  Aligned_cols=157  Identities=25%  Similarity=0.342  Sum_probs=130.1

Q ss_pred             cHHHHHHHHHHHHhc-CCCcccceeeeeeeC--CcceEEEEecCCCCHHHhhcCCCc---hHHHHHHHHHHHhchhhcCC
Q 044022           12 TYGSCINNITYAAQM-SHNHILKRIGCCLQT--PIPILVFQSVEYGTLRDCIFGAPL---PRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~--~~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ....+.+|+.+++++ +||||+++++++...  ...++|+||+. ++|..++.....   .+..++.+++.||.|||   
T Consensus        49 ~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---  124 (337)
T cd07852          49 DAQRTFREIMFLQELGDHPNIVKLLNVIKAENDKDIYLVFEYME-TDLHAVIRANILEDVHKRYIMYQLLKALKYIH---  124 (337)
T ss_pred             hhhhhhHHHHHHHHhcCCCCccceeeeeccCCCceEEEEecccc-cCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            345677899999999 999999999998653  36799999997 699998876432   45678999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcc---eeecccccCCCccCcccccc-cCCCcchhhHHHHHHHH
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH---ITTDRVIGTRGYSAPEYISI-CVLNEKSNVFSFGAFLF  161 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~---~~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~~~  161 (241)
                      +.+++|+||+|+||+++.++.++|+|||.+.........   .......++..|+|||++.+ ..++.++|+||||+++|
T Consensus       125 ~~~i~H~dl~p~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~~l~  204 (337)
T cd07852         125 SGNVIHRDLKPSNILLNSDCRVKLADFGLARSLSELEENPENPVLTDYVATRWYRAPEILLGSTRYTKGVDMWSVGCILG  204 (337)
T ss_pred             HCCeecCCCCHHHEEEcCCCcEEEeeccchhccccccccccCcchhcccccccccCceeeeccccccccchHHHHHHHHH
Confidence            899999999999999999999999999998765443221   11223457888999998765 45788999999999999


Q ss_pred             HHHhcCccccc
Q 044022          162 ELLAGRIHIWD  172 (241)
Q Consensus       162 ~~~~g~~p~~~  172 (241)
                      +|++|+.||..
T Consensus       205 el~tg~~pf~~  215 (337)
T cd07852         205 EMLLGKPLFPG  215 (337)
T ss_pred             HHHhCCCCCCC
Confidence            99999999854

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=100.00  E-value=1.1e-32  Score=224.15  Aligned_cols=154  Identities=22%  Similarity=0.261  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHHHhcCCCcccceeeeeeeC--CcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHHHhchhhcCC
Q 044022           13 YGSCINNITYAAQMSHNHILKRIGCCLQT--PIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~--~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ...+.+|+.++++++|+||+++++++...  +..++|+||+. ++|.+++....     .....++.|++.||.|||   
T Consensus        50 ~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~l~~~~~~~~~~qi~~~l~~lH---  125 (309)
T cd07845          50 PISSLREITLLLNLRHPNIVELKEVVVGKHLDSIFLVMEYCE-QDLASLLDNMPTPFSESQVKCLMLQLLRGLQYLH---  125 (309)
T ss_pred             cchhhHHHHHHHhCCCCCCcceEEEEecCCCCeEEEEEecCC-CCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---
Confidence            34567899999999999999999998765  46799999996 58888776431     246789999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc-cCCCcchhhHHHHHHHHHHH
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI-CVLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~~~~~~  164 (241)
                      +.+++|+||+|+||+++.++.++|+|||.+..........  ....++..|+|||.+.+ ..++.++|+||+|+++|+|+
T Consensus       126 ~~~i~H~dl~p~nil~~~~~~~kL~dfg~~~~~~~~~~~~--~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~  203 (309)
T cd07845         126 ENFIIHRDLKVSNLLLTDKGCLKIADFGLARTYGLPAKPM--TPKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELL  203 (309)
T ss_pred             hCCeecCCCCHHHEEECCCCCEEECccceeeecCCccCCC--CcccccccccChhhhcCCCCcCchHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999987665432111  12235677999999865 45789999999999999999


Q ss_pred             hcCccccc
Q 044022          165 AGRIHIWD  172 (241)
Q Consensus       165 ~g~~p~~~  172 (241)
                      +|.+||..
T Consensus       204 ~g~~~f~~  211 (309)
T cd07845         204 AHKPLLPG  211 (309)
T ss_pred             hCCCCCCC
Confidence            99999954

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=100.00  E-value=2.8e-33  Score=215.93  Aligned_cols=226  Identities=19%  Similarity=0.163  Sum_probs=162.4

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeee-CCcceEEEEecCCCCHHHhhcCCCc---------hHHHHHHHHHHHhchh
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQ-TPIPILVFQSVEYGTLRDCIFGAPL---------PRLKIASDIVNSLAYL   81 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~lv~e~~~~~sL~~~l~~~~~---------~~~~~~~~i~~~l~~l   81 (241)
                      ...+..+|+-+++.|+|||++.+..+|.. +...++++||.++ +|.+.++-+..         ....++.||+.|+.||
T Consensus        70 iS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d~~v~l~fdYAEh-DL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YL  148 (438)
T KOG0666|consen   70 ISMSACREIALLRELKHPNVISLVKVFLSHDKKVWLLFDYAEH-DLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYL  148 (438)
T ss_pred             cCHHHHHHHHHHHHhcCCcchhHHHHHhccCceEEEEehhhhh-hHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHH
Confidence            45678899999999999999999999987 7789999999985 89888754321         2457899999999999


Q ss_pred             hcCCCCCceeccCCCCCeeecCC----CCeEEeeccCceecCCCCcc-eeecccccCCCccCccccccc-CCCcchhhHH
Q 044022           82 HFGFPRPIVLRNFKTQNILFNEE----NVAKWFDFLLSISIPEGETH-ITTDRVIGTRGYSAPEYISIC-VLNEKSNVFS  155 (241)
Q Consensus        82 h~~~~~~ivh~dl~~~nil~~~~----~~~~l~df~~~~~~~~~~~~-~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s  155 (241)
                      |   ++=++||||||.|||+..+    |.+||+|+|+++...+.... ...+.++-|..|+|||.+.+. .|+++.|+||
T Consensus       149 H---~NWvlHRDLKPaNIlvmgdgperG~VKIaDlGlaR~~~~plkpl~s~d~VVVTiWYRAPELLLGa~hYT~AiDvWA  225 (438)
T KOG0666|consen  149 H---SNWVLHRDLKPANILVMGDGPERGRVKIADLGLARLFNNPLKPLASLDPVVVTIWYRAPELLLGARHYTKAIDVWA  225 (438)
T ss_pred             h---hhheeeccCCcceEEEeccCCccCeeEeecccHHHHhhccccccccCCceEEEEEecChHHhcccccccchhhhHH
Confidence            9   8889999999999999877    89999999999877654322 234556678889999999986 5889999999


Q ss_pred             HHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhh---hcccCCCCCCccccCC-------C----------chhH-
Q 044022          156 FGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLE---DKRFTGIPAPIIVQDI-------P----------CIEK-  214 (241)
Q Consensus       156 ~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-------~----------~~~~-  214 (241)
                      +|||+.|+++-.+.|............+..+.+....+   ...-...++-.--+..       +          .+.. 
T Consensus       226 iGCIfaElLtl~PlF~g~E~k~~~~~Pfq~dQl~rIf~vLG~Pt~~~Wp~lkk~Pe~q~~ls~f~~~~~~n~sL~~~~~~  305 (438)
T KOG0666|consen  226 IGCIFAELLTLEPLFKGREEKIKTKNPFQHDQLDRIFEVLGTPTDKDWPDLKKMPEYQTLLSDFRRHYYDNVSLHKYYHK  305 (438)
T ss_pred             HHHHHHHHHccCccccchhhhcccCCCchHHHHHHHHHHcCCCccccchhhhhCcchHHHHHHhHHhhcCcchHHHHHHH
Confidence            99999999999888755333222233333333333222   1111111110000000       0          0000 


Q ss_pred             -HHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          215 -EQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       215 -~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                       ..-++...+|+..+|.+||.+|.|+++
T Consensus       306 ~k~k~~~a~~LL~klL~yDP~kRIta~q  333 (438)
T KOG0666|consen  306 HKVKDPSALDLLQKLLTYDPIKRITAEQ  333 (438)
T ss_pred             hcCCCchHHHHHHHHhccCchhhccHHH
Confidence             001134678999999999999999864

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.1e-32  Score=215.62  Aligned_cols=200  Identities=21%  Similarity=0.248  Sum_probs=159.2

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ..+.+.+|++++++++|+||+++++.+..++..++||||+++++|.+++....    .....++.+++.|+.|||   +.
T Consensus        36 ~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lh---~~  112 (250)
T cd05123          36 EVEHTLTERNILSRINHPFIVKLHYAFQTEEKLYLVLEYAPGGELFSHLSKEGRFSEERARFYAAEIVLALEYLH---SL  112 (250)
T ss_pred             HHHHHHHHHHHHHHcCCCcHHHHHHHeecCCeeEEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HC
Confidence            45678999999999999999999999999999999999999999999986652    246778999999999999   89


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcC
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR  167 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~  167 (241)
                      +++|+||+|+||+++.++.++|+|||.+........  ......++..|+|||...+...+.++|+||||+++|++++|.
T Consensus       113 ~~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~--~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~  190 (250)
T cd05123         113 GIIYRDLKPENILLDADGHIKLTDFGLAKELSSEGS--RTNTFCGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGK  190 (250)
T ss_pred             CceecCCCcceEEEcCCCcEEEeecCcceecccCCC--cccCCcCCccccChHHhCCCCCCchhhHHHHHHHHHHHHHCC
Confidence            999999999999999999999999999876544321  113345788899999998888899999999999999999999


Q ss_pred             cccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          168 IHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       168 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                      .||.....         .+....... .   .   ..+...        .+..+.+++.+||..||++|||+.
T Consensus       191 ~p~~~~~~---------~~~~~~~~~-~---~---~~~~~~--------~~~~l~~~i~~~l~~~p~~R~~~~  239 (250)
T cd05123         191 PPFYAEDR---------KEIYEKILK-D---P---LRFPEF--------LSPEARDLISGLLQKDPTKRLGSG  239 (250)
T ss_pred             CCCCCCCH---------HHHHHHHhc-C---C---CCCCCC--------CCHHHHHHHHHHhcCCHhhCCCcc
Confidence            99954211         111111111 1   0   011111        125688999999999999999983

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=100.00  E-value=1.5e-32  Score=225.09  Aligned_cols=153  Identities=22%  Similarity=0.247  Sum_probs=129.2

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeee-CCcceEEEEecCCCCHHHhhcCCCc---hHHHHHHHHHHHhchhhcCCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQ-TPIPILVFQSVEYGTLRDCIFGAPL---PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ...+.+.+|++++++++||||+++.++|.. ....++++||+ +++|..++.....   ....++.+++.||.|||   +
T Consensus        51 ~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~ql~~aL~~LH---~  126 (328)
T cd07856          51 VLAKRTYRELKLLKHLRHENIISLSDIFISPLEDIYFVTELL-GTDLHRLLTSRPLEKQFIQYFLYQILRGLKYVH---S  126 (328)
T ss_pred             chhHHHHHHHHHHHhcCCCCeeeEeeeEecCCCcEEEEeehh-ccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---h
Confidence            345678899999999999999999999875 45788999998 5799988876543   34568899999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc-cCCCcchhhHHHHHHHHHHHh
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI-CVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~~~~~~~  165 (241)
                      .+++|+||+|+||+++.++.++|+|||.+.......     ....++..|+|||.+.+ ..++.++|+||||+++|++++
T Consensus       127 ~~iiH~dl~p~Nili~~~~~~~l~dfg~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~t  201 (328)
T cd07856         127 AGVVHRDLKPSNILINENCDLKICDFGLARIQDPQM-----TGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLE  201 (328)
T ss_pred             CCcccCCCCHHHEeECCCCCEEeCccccccccCCCc-----CCCcccccccCceeeeccCCcCcHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999987543221     22356778999998865 468899999999999999999


Q ss_pred             cCccccc
Q 044022          166 GRIHIWD  172 (241)
Q Consensus       166 g~~p~~~  172 (241)
                      |+.||..
T Consensus       202 g~~~f~~  208 (328)
T cd07856         202 GKPLFPG  208 (328)
T ss_pred             CCCCCCC
Confidence            9999854

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=100.00  E-value=1.1e-32  Score=220.66  Aligned_cols=201  Identities=18%  Similarity=0.215  Sum_probs=159.3

Q ss_pred             cHHHHHHHHHHHHhcC-CCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQMS-HNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~-h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ....+.+|++++++++ |+||+++++++...+..++|||++++++|.+++.....    ....++.+++.||.+||   +
T Consensus        44 ~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~i~~ql~~~l~~Lh---~  120 (280)
T cd05581          44 KVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLYFVLEYAPNGELLQYIRKYGSLDEKCTRFYAAEILLALEYLH---S  120 (280)
T ss_pred             HHHHHHHHHHHHHhcccCCCchhHHHHhcCCceEEEEEcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            4567889999999998 99999999999999999999999999999999876522    56788999999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcc------------------eeecccccCCCccCcccccccCCC
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH------------------ITTDRVIGTRGYSAPEYISICVLN  148 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~------------------~~~~~~~~~~~~~aPE~~~~~~~~  148 (241)
                      .+++|+||+|+||+++.++.++++|||.+.........                  .......++..|+|||......++
T Consensus       121 ~~~~H~dl~~~ni~i~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~  200 (280)
T cd05581         121 KGIIHRDLKPENILLDKDMHIKITDFGTAKVLDPNSSPESNKGDATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAG  200 (280)
T ss_pred             CCeeecCCCHHHeEECCCCCEEecCCccccccCCccccccCCCCCccccccccccccccccccCCccccCHHHhCCCCCC
Confidence            99999999999999999999999999998765433210                  112234567889999999888889


Q ss_pred             cchhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHh
Q 044022          149 EKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLEC  228 (241)
Q Consensus       149 ~~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c  228 (241)
                      .++|+||||++++++++|+.||.....         ........ ...      .....        ..++.+.+++.+|
T Consensus       201 ~~~Di~slG~~l~~l~~g~~p~~~~~~---------~~~~~~~~-~~~------~~~~~--------~~~~~~~~li~~~  256 (280)
T cd05581         201 KSSDLWALGCIIYQMLTGKPPFRGSNE---------YLTFQKIL-KLE------YSFPP--------NFPPDAKDLIEKL  256 (280)
T ss_pred             hhhhHHHHHHHHHHHHhCCCCCCCccH---------HHHHHHHH-hcC------CCCCC--------ccCHHHHHHHHHH
Confidence            999999999999999999999965210         01111111 000      00111        1135688999999


Q ss_pred             ccCCCCCCCCC
Q 044022          229 VNNSPEDRPTM  239 (241)
Q Consensus       229 l~~~p~~Rpt~  239 (241)
                      |+.+|++|||+
T Consensus       257 l~~~p~~R~~~  267 (280)
T cd05581         257 LVLDPQDRLGV  267 (280)
T ss_pred             hcCCHhhCCCc
Confidence            99999999998

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=100.00  E-value=1.3e-32  Score=225.67  Aligned_cols=158  Identities=22%  Similarity=0.251  Sum_probs=134.3

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCC-----cceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchh
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTP-----IPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYL   81 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~-----~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~l   81 (241)
                      ...+.+.+|+.++++++|+||+++.+++....     ..++++||+. ++|.+++.....    ....++.+++.||++|
T Consensus        41 ~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~l~~~~~~~i~~~l~~~l~~L  119 (330)
T cd07834          41 IDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDVYIVTELME-TDLHKVIKSPQPLTDDHIQYFLYQILRGLKYL  119 (330)
T ss_pred             hhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccceEEEecchh-hhHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            45677899999999999999999999998765     7899999997 589888866422    4577999999999999


Q ss_pred             hcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcc-eeecccccCCCccCccccccc-CCCcchhhHHHHHH
Q 044022           82 HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH-ITTDRVIGTRGYSAPEYISIC-VLNEKSNVFSFGAF  159 (241)
Q Consensus        82 h~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~-~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~  159 (241)
                      |   +.+++|+||||.||+++.++.++|+|||.+......... .......++..|+|||.+.+. .++.++|+||||++
T Consensus       120 H---~~gi~H~dlkp~nili~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~i  196 (330)
T cd07834         120 H---SANVIHRDLKPSNILVNSNCDLKICDFGLARGVDPDEDEKGFLTEYVVTRWYRAPELLLSSSRYTKAIDIWSVGCI  196 (330)
T ss_pred             H---hCCeecCCCCHHHEEEcCCCCEEEcccCceEeecccccccccccccccccCcCCceeeecccCCCcchhHHHHHHH
Confidence            9   899999999999999999999999999999876554210 111234578889999999887 78899999999999


Q ss_pred             HHHHHhcCccccc
Q 044022          160 LFELLAGRIHIWD  172 (241)
Q Consensus       160 ~~~~~~g~~p~~~  172 (241)
                      +|+|++|+.||..
T Consensus       197 l~~l~~g~~pf~~  209 (330)
T cd07834         197 FAELLTRKPLFPG  209 (330)
T ss_pred             HHHHHcCCCCcCC
Confidence            9999999999965

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=100.00  E-value=1.5e-32  Score=221.70  Aligned_cols=155  Identities=17%  Similarity=0.176  Sum_probs=126.7

Q ss_pred             cHHHHHHHHHHHHhcC-CCcccceeeeeeeCCc-----ceEEEEecCCCCHHHhhcCC---------CchHHHHHHHHHH
Q 044022           12 TYGSCINNITYAAQMS-HNHILKRIGCCLQTPI-----PILVFQSVEYGTLRDCIFGA---------PLPRLKIASDIVN   76 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~-h~~iv~~~~~~~~~~~-----~~lv~e~~~~~sL~~~l~~~---------~~~~~~~~~~i~~   76 (241)
                      ....+.+|+.++++++ |+||+++++++...+.     .++|+||+++ +|.+++...         ......++.+|+.
T Consensus        43 ~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~  121 (295)
T cd07837          43 IPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPSLYLVFEYLDS-DLKKFMDSNGRGPGRPLPAKTIKSFMYQLLK  121 (295)
T ss_pred             CchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCceEEEEeeccCc-CHHHHHHHhcccCCCCCCHHHHHHHHHHHHH
Confidence            3467889999999995 6999999999987655     7999999984 888876432         1146788999999


Q ss_pred             HhchhhcCCCCCceeccCCCCCeeecC-CCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc-cCCCcchhhH
Q 044022           77 SLAYLHFGFPRPIVLRNFKTQNILFNE-ENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI-CVLNEKSNVF  154 (241)
Q Consensus        77 ~l~~lh~~~~~~ivh~dl~~~nil~~~-~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~  154 (241)
                      ||.|||   +.+++|+||+|+||+++. ++.++|+|||.+.........  .....+++.|+|||.+.+ ..++.++|+|
T Consensus       122 ~L~~LH---~~~i~H~dl~~~nil~~~~~~~~kl~dfg~~~~~~~~~~~--~~~~~~~~~~~aPE~~~~~~~~~~~~Di~  196 (295)
T cd07837         122 GVAHCH---KHGVMHRDLKPQNLLVDKQKGLLKIADLGLGRAFSIPVKS--YTHEIVTLWYRAPEVLLGSTHYSTPVDIW  196 (295)
T ss_pred             HHHHHH---HCCeeecCCChHHEEEecCCCeEEEeecccceecCCCccc--cCCcccccCCCChHHhhCCCCCCchHHHH
Confidence            999999   899999999999999998 889999999998755332111  112245778999998865 3578999999


Q ss_pred             HHHHHHHHHHhcCccccc
Q 044022          155 SFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       155 s~G~~~~~~~~g~~p~~~  172 (241)
                      |||+++|+|++|..||..
T Consensus       197 slG~~l~~l~~g~~~~~~  214 (295)
T cd07837         197 SVGCIFAEMSRKQPLFPG  214 (295)
T ss_pred             HHHHHHHHHHcCCCCCCC
Confidence            999999999999999854

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=5.7e-33  Score=215.69  Aligned_cols=209  Identities=20%  Similarity=0.262  Sum_probs=164.2

Q ss_pred             Cccccccc--ccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHH
Q 044022            1 MKFYGHEY--HRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDI   74 (241)
Q Consensus         1 iK~~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i   74 (241)
                      ||+..++.  .++....-+.|-++|+..+||.+..+.-.|+..+.+|.||||..||.|.-.+.....    ....+-..|
T Consensus       198 iKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~drlCFVMeyanGGeLf~HLsrer~FsE~RtRFYGaEI  277 (516)
T KOG0690|consen  198 IKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSFQTQDRLCFVMEYANGGELFFHLSRERVFSEDRTRFYGAEI  277 (516)
T ss_pred             hhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhhccCceEEEEEEEccCceEeeehhhhhcccchhhhhhhHHH
Confidence            45555554  334566677899999999999999999999999999999999999999887766422    344577899


Q ss_pred             HHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhH
Q 044022           75 VNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVF  154 (241)
Q Consensus        75 ~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~  154 (241)
                      +.||.|||   +++||.||+|.+|+|+|++|++||+|||+++.--...  ....+.+||+.|+|||++....|+.++|.|
T Consensus       278 vsAL~YLH---s~~ivYRDlKLENLlLDkDGHIKitDFGLCKE~I~~g--~t~kTFCGTPEYLAPEVleDnDYgraVDWW  352 (516)
T KOG0690|consen  278 VSALGYLH---SRNIVYRDLKLENLLLDKDGHIKITDFGLCKEEIKYG--DTTKTFCGTPEYLAPEVLEDNDYGRAVDWW  352 (516)
T ss_pred             HHHhhhhh---hCCeeeeechhhhheeccCCceEeeecccchhccccc--ceeccccCChhhcCchhhccccccceeehh
Confidence            99999999   9999999999999999999999999999997643332  233567899999999999999999999999


Q ss_pred             HHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCC
Q 044022          155 SFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPE  234 (241)
Q Consensus       155 s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~  234 (241)
                      .+|+++|||+.|+.||+...++.     .   +-.-...+..+..                .-+++.+.|+...|.+||+
T Consensus       353 G~GVVMYEMmCGRLPFyn~dh~k-----L---FeLIl~ed~kFPr----------------~ls~eAktLLsGLL~kdP~  408 (516)
T KOG0690|consen  353 GVGVVMYEMMCGRLPFYNKDHEK-----L---FELILMEDLKFPR----------------TLSPEAKTLLSGLLKKDPK  408 (516)
T ss_pred             hhhHHHHHHHhccCcccccchhH-----H---HHHHHhhhccCCc----------------cCCHHHHHHHHHHhhcChH
Confidence            99999999999999997632221     0   0011111221111                1124577899999999999


Q ss_pred             CCCC
Q 044022          235 DRPT  238 (241)
Q Consensus       235 ~Rpt  238 (241)
                      +|..
T Consensus       409 kRLG  412 (516)
T KOG0690|consen  409 KRLG  412 (516)
T ss_pred             hhcC
Confidence            9964

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=1.3e-32  Score=226.31  Aligned_cols=156  Identities=19%  Similarity=0.253  Sum_probs=129.9

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeC-----CcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchh
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQT-----PIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYL   81 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-----~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~l   81 (241)
                      .....+.+|+.+++.++|+||+++++++...     ...++|+||+. ++|.+++.....    ....++.+++.||.||
T Consensus        46 ~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~~~l~~~~~~~i~~qi~~aL~~L  124 (337)
T cd07858          46 IDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFNDVYIVYELMD-TDLHQIIRSSQTLSDDHCQYFLYQLLRGLKYI  124 (337)
T ss_pred             chhHHHHHHHHHHHhcCCCCccchHHheecccccccCcEEEEEeCCC-CCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            3456778899999999999999999988644     34799999996 789888865422    4678899999999999


Q ss_pred             hcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc-cCCCcchhhHHHHHHH
Q 044022           82 HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI-CVLNEKSNVFSFGAFL  160 (241)
Q Consensus        82 h~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~~  160 (241)
                      |   +.+++|+||+|+||+++.++.++|+|||++........  ......++..|+|||.+.. ..++.++|+||||+++
T Consensus       125 H---~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il  199 (337)
T cd07858         125 H---SANVLHRDLKPSNLLLNANCDLKICDFGLARTTSEKGD--FMTEYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIF  199 (337)
T ss_pred             H---hCCEecCCCCHHHEEEcCCCCEEECcCccccccCCCcc--cccccccccCccChHHHhcCCCCCCcccHHHHHHHH
Confidence            9   89999999999999999999999999999876543321  1123457888999998865 4688999999999999


Q ss_pred             HHHHhcCccccc
Q 044022          161 FELLAGRIHIWD  172 (241)
Q Consensus       161 ~~~~~g~~p~~~  172 (241)
                      |+|++|+.||..
T Consensus       200 ~~l~~g~~pf~~  211 (337)
T cd07858         200 AELLGRKPLFPG  211 (337)
T ss_pred             HHHHcCCCCCCC
Confidence            999999999954

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=100.00  E-value=2.1e-32  Score=219.31  Aligned_cols=156  Identities=24%  Similarity=0.319  Sum_probs=132.9

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC--Cc---hHHHHHHHHHHHhchhhcCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA--PL---PRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~--~~---~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ...+.+.+|+.++++++|+|++++++++...+..++|+||++ ++|.+++...  ..   ....++.+++.||.+||   
T Consensus        40 ~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~~-~~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~LH---  115 (282)
T cd07829          40 GIPSTALREISLLKELKHPNIVKLLDVIHTERKLYLVFEYCD-MDLKKYLDKRPGPLSPNLIKSIMYQLLRGLAYCH---  115 (282)
T ss_pred             cccHHHHHHHHHHHhcCCCCHHHHHhhhhcCCceEEEecCcC-cCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH---
Confidence            345678899999999999999999999999999999999997 6999998665  22   46788999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc-CCCcchhhHHHHHHHHHHH
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-VLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~~~~~~  164 (241)
                      +.+++|+||+|+||+++.++.++|+|||.+........  ......++..|+|||.+... .++.++|+||||+++|+++
T Consensus       116 ~~~i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~~~~~~--~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~~l~~l~  193 (282)
T cd07829         116 SHRILHRDLKPQNILINRDGVLKLADFGLARAFGIPLR--TYTHEVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMI  193 (282)
T ss_pred             HCCcccCCCChheEEEcCCCCEEEecCCcccccCCCcc--ccCccccCcCcCChHHhcCCcCCCccccHHHHHHHHHHHH
Confidence            89999999999999999999999999999876543321  11223456779999998766 7889999999999999999


Q ss_pred             hcCccccc
Q 044022          165 AGRIHIWD  172 (241)
Q Consensus       165 ~g~~p~~~  172 (241)
                      +|..||..
T Consensus       194 ~~~~~~~~  201 (282)
T cd07829         194 TGKPLFPG  201 (282)
T ss_pred             hCCCCCCC
Confidence            99999854

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-33  Score=213.13  Aligned_cols=213  Identities=20%  Similarity=0.280  Sum_probs=159.6

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcC-CCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC--Cc--hH-HHHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMS-HNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA--PL--PR-LKIASDI   74 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~-h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~--~~--~~-~~~~~~i   74 (241)
                      ||.+....+++..++++..+.++..-. .|.||+.+|+|......++-||.|. ..++.+++.-  +.  .+ -++...+
T Consensus       122 VK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~dV~IcMelMs-~C~ekLlkrik~piPE~ilGk~tva~  200 (391)
T KOG0983|consen  122 VKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYFITNTDVFICMELMS-TCAEKLLKRIKGPIPERILGKMTVAI  200 (391)
T ss_pred             EEeecccCCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCchHHHHHHHHH-HHHHHHHHHhcCCchHHhhhhhHHHH
Confidence            466666677778888888888887654 6999999999999998999999884 4444444332  11  22 2566678


Q ss_pred             HHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc---cCCCcch
Q 044022           75 VNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI---CVLNEKS  151 (241)
Q Consensus        75 ~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~---~~~~~~~  151 (241)
                      +.||.||.+  +++|+|||+||+|||+|..|++|++|||++..+.....+   +...|.+.|||||.+.-   ..|+.++
T Consensus       201 v~AL~YLKe--KH~viHRDvKPSNILlDe~GniKlCDFGIsGrlvdSkAh---trsAGC~~YMaPERidp~~~~kYDiRa  275 (391)
T KOG0983|consen  201 VKALYYLKE--KHGVIHRDVKPSNILLDERGNIKLCDFGISGRLVDSKAH---TRSAGCAAYMAPERIDPPDKPKYDIRA  275 (391)
T ss_pred             HHHHHHHHH--hcceeecccCccceEEccCCCEEeecccccceeeccccc---ccccCCccccCccccCCCCCCccchhh
Confidence            999999997  889999999999999999999999999999877665433   33468999999999864   3688999


Q ss_pred             hhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccC
Q 044022          152 NVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNN  231 (241)
Q Consensus       152 Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~  231 (241)
                      ||||||+.++|++||+.||..-.       ..+.-..+-+. +.     + +.+.+.      ...++++.+++..||.+
T Consensus       276 DVWSlGITlveLaTg~yPy~~c~-------tdFe~ltkvln-~e-----P-P~L~~~------~gFSp~F~~fv~~CL~k  335 (391)
T KOG0983|consen  276 DVWSLGITLVELATGQYPYKGCK-------TDFEVLTKVLN-EE-----P-PLLPGH------MGFSPDFQSFVKDCLTK  335 (391)
T ss_pred             hhhhhccchhhhhcccCCCCCCC-------ccHHHHHHHHh-cC-----C-CCCCcc------cCcCHHHHHHHHHHhhc
Confidence            99999999999999999995411       11111111111 11     1 222221      13557899999999999


Q ss_pred             CCCCCCCC
Q 044022          232 SPEDRPTM  239 (241)
Q Consensus       232 ~p~~Rpt~  239 (241)
                      |+.+||.-
T Consensus       336 d~r~RP~Y  343 (391)
T KOG0983|consen  336 DHRKRPKY  343 (391)
T ss_pred             CcccCcch
Confidence            99999963

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=100.00  E-value=2.4e-32  Score=221.21  Aligned_cols=156  Identities=21%  Similarity=0.210  Sum_probs=128.0

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCC----------cceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHH
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTP----------IPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVN   76 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~----------~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~   76 (241)
                      ....+.+|++++++++|||++++++++....          ..++|+||+++ ++.+.+....     .....++.+++.
T Consensus        49 ~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~  127 (302)
T cd07864          49 FPITAIREIKILRQLNHRNIVNLKEIVTDKQDALDFKKDKGAFYLVFEYMDH-DLMGLLESGLVHFSEDHIKSFMKQLLE  127 (302)
T ss_pred             chHHHHHHHHHHHhCCCCCeeeeeheecCcchhhhccccCCcEEEEEcccCc-cHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence            3456788999999999999999999987654          78999999975 7777765432     246789999999


Q ss_pred             HhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc-CCCcchhhHH
Q 044022           77 SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-VLNEKSNVFS  155 (241)
Q Consensus        77 ~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s  155 (241)
                      ||+|||   +.+++|+||+|+||+++.++.++|+|||.+........ .......++..|+|||.+.+. .++.++||||
T Consensus       128 aL~~LH---~~~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~s  203 (302)
T cd07864         128 GLNYCH---KKNFLHRDIKCSNILLNNKGQIKLADFGLARLYNSEES-RPYTNKVITLWYRPPELLLGEERYGPAIDVWS  203 (302)
T ss_pred             HHHHHH---hCCeecCCCCHHHEEECCCCcEEeCcccccccccCCcc-cccccceeccCccChHHhcCCCCCCchhHHHH
Confidence            999999   89999999999999999999999999999876543321 111223457789999988643 5688999999


Q ss_pred             HHHHHHHHHhcCccccc
Q 044022          156 FGAFLFELLAGRIHIWD  172 (241)
Q Consensus       156 ~G~~~~~~~~g~~p~~~  172 (241)
                      ||+++|++++|++||..
T Consensus       204 lG~~~~el~~g~~~~~~  220 (302)
T cd07864         204 CGCILGELFTKKPIFQA  220 (302)
T ss_pred             HHHHHHHHHhCCCCCCC
Confidence            99999999999999964

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=100.00  E-value=2.2e-32  Score=216.89  Aligned_cols=201  Identities=18%  Similarity=0.215  Sum_probs=155.6

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC-----C---chHHHHHHHHHHHhchhhc
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA-----P---LPRLKIASDIVNSLAYLHF   83 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~-----~---~~~~~~~~~i~~~l~~lh~   83 (241)
                      ...++.+|+.++++++||||+++++++......++|+||+++++|.+++...     .   .....++.+++.|+.||| 
T Consensus        45 ~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH-  123 (260)
T cd08222          45 ETVQANQEAQLLSKLDHPAIVKFHASFLERDAFCIITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMH-  123 (260)
T ss_pred             hHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCceEEEEEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHH-
Confidence            4456778999999999999999999999988999999999999999887531     1   145788999999999999 


Q ss_pred             CCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHH
Q 044022           84 GFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL  163 (241)
Q Consensus        84 ~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~  163 (241)
                        +.+++|+||+|+||+++. +.++++|||.+.........  .....++..|+|||...+..++.++|+||||+++|++
T Consensus       124 --~~~i~h~~l~~~nili~~-~~~~l~d~g~~~~~~~~~~~--~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l  198 (260)
T cd08222         124 --QRRILHRDLKAKNIFLKN-NLLKIGDFGVSRLLMGSCDL--ATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEM  198 (260)
T ss_pred             --HcCccccCCChhheEeec-CCEeecccCceeecCCCccc--ccCCCCCcCccCHHHHccCCCCchhhHHHHHHHHHHH
Confidence              999999999999999975 56999999988765432221  1234577889999999888888999999999999999


Q ss_pred             HhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          164 LAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       164 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ++|..||...         ...+...... .+.     .+...        ...+..+.+++.+||..||++||++.|
T Consensus       199 ~~~~~~~~~~---------~~~~~~~~~~-~~~-----~~~~~--------~~~~~~~~~li~~~l~~~p~~Rp~~~~  253 (260)
T cd08222         199 CCLAHAFEGQ---------NFLSVVLRIV-EGP-----TPSLP--------ETYSRQLNSIMQSMLNKDPSLRPSAAE  253 (260)
T ss_pred             HhCCCCCCCc---------cHHHHHHHHH-cCC-----CCCCc--------chhcHHHHHHHHHHhcCChhhCcCHHH
Confidence            9999998531         1111111111 111     11111        134467899999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=100.00  E-value=6.1e-32  Score=217.10  Aligned_cols=217  Identities=19%  Similarity=0.219  Sum_probs=153.8

Q ss_pred             HHHHHHHHHHHHhc---CCCcccceeeeeeeCCc-----ceEEEEecCCCCHHHhhcCCC------chHHHHHHHHHHHh
Q 044022           13 YGSCINNITYAAQM---SHNHILKRIGCCLQTPI-----PILVFQSVEYGTLRDCIFGAP------LPRLKIASDIVNSL   78 (241)
Q Consensus        13 ~~~~~~e~~~l~~l---~h~~iv~~~~~~~~~~~-----~~lv~e~~~~~sL~~~l~~~~------~~~~~~~~~i~~~l   78 (241)
                      ...+.+|+.+++++   +|+|++++++++...+.     .++++||+. ++|.+++....      ..+..++.+++.||
T Consensus        42 ~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~~~l~~e~~~-~~l~~~l~~~~~~~l~~~~~~~~~~~i~~al  120 (287)
T cd07838          42 PLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELKLTLVFEHVD-QDLATYLSKCPKPGLPPETIKDLMRQLLRGV  120 (287)
T ss_pred             hhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCceeEEEehhcc-cCHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence            44567788887776   59999999999987776     899999997 58988875432      14678999999999


Q ss_pred             chhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHH
Q 044022           79 AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGA  158 (241)
Q Consensus        79 ~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~  158 (241)
                      .|||   +.+++|+||+|+||+++.++.++|+|||.+.........   ....++..|+|||++.+..++.++|+||||+
T Consensus       121 ~~LH---~~~i~h~~l~~~nili~~~~~~~l~dfg~~~~~~~~~~~---~~~~~~~~~~~PE~~~~~~~~~~~Di~s~G~  194 (287)
T cd07838         121 DFLH---SHRIVHRDLKPQNILVTSDGQVKIADFGLARIYSFEMAL---TSVVVTLWYRAPEVLLQSSYATPVDMWSVGC  194 (287)
T ss_pred             HHHH---HCCeeeccCChhhEEEccCCCEEEeccCcceeccCCccc---ccccccccccChHHhccCCCCCcchhhhHHH
Confidence            9999   899999999999999999999999999998765433211   1234678899999999888999999999999


Q ss_pred             HHHHHHhcCcccccccccCCCcccchHHHHHHHhhhc--ccCCCC---CCccccCCC---chhHHHHHHHHHHHHHHhcc
Q 044022          159 FLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDK--RFTGIP---APIIVQDIP---CIEKEQQLHASAQLTLECVN  230 (241)
Q Consensus       159 ~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~---~~~~~~~~~~~~~l~~~cl~  230 (241)
                      ++|+|++|.+||......     ..............  ......   .........   ..........+.+++.+||+
T Consensus       195 ~l~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~  269 (287)
T cd07838         195 IFAELFRRRPLFRGTSEA-----DQLDKIFDVIGLPSEEEWPRNVSLPRSSFPSYTPRSFKSFVPEICEEGLDLLKKMLT  269 (287)
T ss_pred             HHHHHHhCCCcccCCChH-----HHHHHHHHHcCCCChHhcCCCcccchhhcccccccchhhhhhhhhHHHHHHHHHHhc
Confidence            999999999998642111     11111111100000  000000   000000000   00011334677899999999


Q ss_pred             CCCCCCCCCCC
Q 044022          231 NSPEDRPTMVD  241 (241)
Q Consensus       231 ~~p~~Rpt~~e  241 (241)
                      .||++|||++|
T Consensus       270 ~dp~~Rp~~~~  280 (287)
T cd07838         270 FNPHKRISAFE  280 (287)
T ss_pred             cCCccCCCHHH
Confidence            99999999864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=100.00  E-value=6.4e-32  Score=216.48  Aligned_cols=194  Identities=19%  Similarity=0.208  Sum_probs=147.5

Q ss_pred             HHHHHHH---HHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCCCC
Q 044022           16 CINNITY---AAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFPRP   88 (241)
Q Consensus        16 ~~~e~~~---l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~~~   88 (241)
                      +..|..+   ++...||||+++.+++...+..++|+||+.+++|..++.....    .+..++.|++.|+.|||   +.+
T Consensus        41 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~g~~L~~~l~~~~~l~~~~~~~~~~ql~~~l~~lH---~~~  117 (278)
T cd05606          41 ALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEAEMRFYAAEIILGLEHMH---NRF  117 (278)
T ss_pred             HHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCC
Confidence            4444443   4445799999999999999999999999999999998865432    46789999999999999   899


Q ss_pred             ceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc-CCCcchhhHHHHHHHHHHHhcC
Q 044022           89 IVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-VLNEKSNVFSFGAFLFELLAGR  167 (241)
Q Consensus        89 ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~~~~~~~g~  167 (241)
                      ++|+||+|+||+++.++.++|+|||.+........    ....|+..|+|||++.+. .++.++||||+|+++|+|++|+
T Consensus       118 i~H~di~p~nili~~~~~~kl~dfg~~~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~~g~  193 (278)
T cd05606         118 VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKP----HASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGH  193 (278)
T ss_pred             EEcCCCCHHHEEECCCCCEEEccCcCccccCccCC----cCcCCCcCCcCcHHhcCCCCCCcccchHhHHHHHHHHHhCC
Confidence            99999999999999999999999999865433221    234688999999998754 6889999999999999999999


Q ss_pred             cccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCC
Q 044022          168 IHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRP  237 (241)
Q Consensus       168 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rp  237 (241)
                      .||.......      . .........      ....+..        ..+..+.+++.+||..+|++||
T Consensus       194 ~p~~~~~~~~------~-~~~~~~~~~------~~~~~~~--------~~s~~~~~li~~~l~~~p~~R~  242 (278)
T cd05606         194 SPFRQHKTKD------K-HEIDRMTLT------MAVELPD--------SFSPELRSLLEGLLQRDVNRRL  242 (278)
T ss_pred             CCCCCCCccc------h-HHHHHHhhc------cCCCCCC--------cCCHHHHHHHHHHhhcCHHhcc
Confidence            9996521110      0 000010000      0111111        1235788999999999999999

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.98  E-value=6.2e-32  Score=218.27  Aligned_cols=204  Identities=14%  Similarity=0.146  Sum_probs=143.3

Q ss_pred             HHHHHHHhcCCCcccceeeeeeeCC----cceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCCCCc
Q 044022           18 NNITYAAQMSHNHILKRIGCCLQTP----IPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFPRPI   89 (241)
Q Consensus        18 ~e~~~l~~l~h~~iv~~~~~~~~~~----~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~~~i   89 (241)
                      .+...+..+.|+|++++++++....    ..+++++++. .++.+.+....    .....++.|++.|+.|||   +.++
T Consensus        72 ~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i  147 (294)
T PHA02882         72 ALWKNIHNIDHLGIPKYYGCGSFKRCRMYYRFILLEKLV-ENTKEIFKRIKCKNKKLIKNIMKDMLTTLEYIH---EHGI  147 (294)
T ss_pred             HHHHHhccCCCCCCCcEEEeeeEecCCceEEEEEEehhc-cCHHHHHHhhccCCHHHHHHHHHHHHHHHHHHH---hCCe
Confidence            3444556678999999998766543    3367777764 46666654321    235678999999999999   8999


Q ss_pred             eeccCCCCCeeecCCCCeEEeeccCceecCCCCcc-----eeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHH
Q 044022           90 VLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH-----ITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        90 vh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~-----~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~  164 (241)
                      +||||||+|||++.++.++|+|||+++........     .......||+.|+|||+..+..++.++||||||+++|+|+
T Consensus       148 iHrDiKp~Nill~~~~~~~l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~DiwSlG~~l~el~  227 (294)
T PHA02882        148 SHGDIKPENIMVDGNNRGYIIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCMLKWA  227 (294)
T ss_pred             ecCCCCHHHEEEcCCCcEEEEEcCCceeeccCCcccccccccccccCCCccccCHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998765322111     1112346899999999999889999999999999999999


Q ss_pred             hcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          165 AGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       165 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +|+.||...............+....... +..       ...        ..+..+.+++..||..+|++||++++
T Consensus       228 ~g~~P~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~--------~~~~~~~~~~~~~~~~~~~~rp~~~~  288 (294)
T PHA02882        228 GIKLPWKGFGHNGNLIHAAKCDFIKRLHE-GKI-------KIK--------NANKFIYDFIECVTKLSYEEKPDYDA  288 (294)
T ss_pred             hCCCCCCccccchHHHHHhHHHHHHHhhh-hhh-------ccC--------CCCHHHHHHHHHHHhCCCCCCCCHHH
Confidence            99999965321110000000111111111 000       001        12256889999999999999999753

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.98  E-value=5.3e-32  Score=222.46  Aligned_cols=154  Identities=19%  Similarity=0.235  Sum_probs=129.4

Q ss_pred             HHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCCCCce
Q 044022           15 SCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFPRPIV   90 (241)
Q Consensus        15 ~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~~~iv   90 (241)
                      .+.+|++++++++|+||+++++++...+..++||||+. ++|.+++....    .....++.|++.||.|||   +.+++
T Consensus        66 ~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~ql~~aL~~LH---~~~i~  141 (335)
T PTZ00024         66 TTLRELKIMNEIKHENIMGLVDVYVEGDFINLVMDIMA-SDLKKVVDRKIRLTESQVKCILLQILNGLNVLH---KWYFM  141 (335)
T ss_pred             hHHHHHHHHHhCCCcceeeeeEEEecCCcEEEEEeccc-cCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCee
Confidence            57899999999999999999999999999999999997 69998886542    246789999999999999   99999


Q ss_pred             eccCCCCCeeecCCCCeEEeeccCceecCCCCc------------ceeecccccCCCccCccccccc-CCCcchhhHHHH
Q 044022           91 LRNFKTQNILFNEENVAKWFDFLLSISIPEGET------------HITTDRVIGTRGYSAPEYISIC-VLNEKSNVFSFG  157 (241)
Q Consensus        91 h~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~------------~~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G  157 (241)
                      |+||+|+||+++.++.++++|||.+........            ........++..|+|||.+.+. .++.++|+||||
T Consensus       142 H~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG  221 (335)
T PTZ00024        142 HRDLSPANIFINSKGICKIADFGLARRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVG  221 (335)
T ss_pred             cccccHHHeEECCCCCEEECCccceeecccccccccccccccccccccccccccccCCCCChhcccCCCCCcHHHHHHHH
Confidence            999999999999999999999999876541110            0111223457789999998764 468899999999


Q ss_pred             HHHHHHHhcCccccc
Q 044022          158 AFLFELLAGRIHIWD  172 (241)
Q Consensus       158 ~~~~~~~~g~~p~~~  172 (241)
                      +++|+|++|..||..
T Consensus       222 ~~l~el~tg~~p~~~  236 (335)
T PTZ00024        222 CIFAELLTGKPLFPG  236 (335)
T ss_pred             HHHHHHHhCCCCCCC
Confidence            999999999999954

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.98  E-value=3.1e-32  Score=221.34  Aligned_cols=156  Identities=17%  Similarity=0.259  Sum_probs=125.6

Q ss_pred             HHHHHHHHHHHHhcCCCcccceeeeeeeCC--------cceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHHHhc
Q 044022           13 YGSCINNITYAAQMSHNHILKRIGCCLQTP--------IPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVNSLA   79 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--------~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~~l~   79 (241)
                      ...+.+|++++++++|+||+++++++....        ..++|+||+. ++|...+....     .....++.+++.||.
T Consensus        51 ~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~lv~~~~~-~~l~~~~~~~~~~~~~~~~~~i~~~l~~al~  129 (311)
T cd07866          51 PITALREIKILKKLKHPNVVPLIDMAVERPDKSKRKRGSVYMVTPYMD-HDLSGLLENPSVKLTESQIKCYMLQLLEGIN  129 (311)
T ss_pred             chhHHHHHHHHHhcCCCCccchhhheecccccccccCceEEEEEecCC-cCHHHHHhccccCCCHHHHHHHHHHHHHHHH
Confidence            346789999999999999999999876433        4699999996 57777665432     146778999999999


Q ss_pred             hhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcc---------eeecccccCCCccCccccccc-CCCc
Q 044022           80 YLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH---------ITTDRVIGTRGYSAPEYISIC-VLNE  149 (241)
Q Consensus        80 ~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~---------~~~~~~~~~~~~~aPE~~~~~-~~~~  149 (241)
                      |||   +.+++|+||||+||+++.++.++|+|||++.........         .......+++.|+|||.+.+. .++.
T Consensus       130 ~lH---~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  206 (311)
T cd07866         130 YLH---ENHILHRDIKAANILIDNQGILKIADFGLARPYDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLGERRYTT  206 (311)
T ss_pred             HHH---hCCeecCCCCHHHEEECCCCCEEECcCccchhccCCCcccccCCcccccccccceeccCcCChHHhhCCCccCc
Confidence            999   899999999999999999999999999998754432111         111223467789999988654 5789


Q ss_pred             chhhHHHHHHHHHHHhcCccccc
Q 044022          150 KSNVFSFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       150 ~~Di~s~G~~~~~~~~g~~p~~~  172 (241)
                      ++||||||+++|+|++|++||..
T Consensus       207 ~~Dv~slG~il~el~~g~~~~~~  229 (311)
T cd07866         207 AVDIWGIGCVFAEMFTRRPILQG  229 (311)
T ss_pred             hhHhHHHHHHHHHHHhCCCCCCC
Confidence            99999999999999999999854

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.98  E-value=5.6e-32  Score=222.98  Aligned_cols=152  Identities=21%  Similarity=0.272  Sum_probs=126.1

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCC------cceEEEEecCCCCHHHhhcCC-C-chHHHHHHHHHHHhchhhc
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTP------IPILVFQSVEYGTLRDCIFGA-P-LPRLKIASDIVNSLAYLHF   83 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~------~~~lv~e~~~~~sL~~~l~~~-~-~~~~~~~~~i~~~l~~lh~   83 (241)
                      ....+.+|+.++++++|+||+++++++....      .+++|+||+. .+|....... . .....++.+++.|++||| 
T Consensus        57 ~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~qi~~aL~~LH-  134 (342)
T cd07879          57 FAKRAYRELTLLKHMQHENVIGLLDVFTSAVSGDEFQDFYLVMPYMQ-TDLQKIMGHPLSEDKVQYLVYQMLCGLKYIH-  134 (342)
T ss_pred             chhHHHHHHHHHHhcCCCCccchhheecccccCCCCceEEEEecccc-cCHHHHHcCCCCHHHHHHHHHHHHHHHHHHH-
Confidence            3456889999999999999999999987543      4589999996 5787765432 2 245678899999999999 


Q ss_pred             CCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc-cCCCcchhhHHHHHHHHH
Q 044022           84 GFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI-CVLNEKSNVFSFGAFLFE  162 (241)
Q Consensus        84 ~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~~~~  162 (241)
                        +.+++||||+|+||+++.++.++|+|||.+.......     ....++..|+|||.+.+ ..++.++|+||||+++|+
T Consensus       135 --~~~i~H~dlkp~NIll~~~~~~kL~dfg~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slGvil~e  207 (342)
T cd07879         135 --SAGIIHRDLKPGNLAVNEDCELKILDFGLARHADAEM-----TGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAE  207 (342)
T ss_pred             --HCCcccCCCCHHHEEECCCCCEEEeeCCCCcCCCCCC-----CCceeeecccChhhhcCccccCchHHHHHHHHHHHH
Confidence              8999999999999999999999999999987543321     22356778999999876 457889999999999999


Q ss_pred             HHhcCccccc
Q 044022          163 LLAGRIHIWD  172 (241)
Q Consensus       163 ~~~g~~p~~~  172 (241)
                      +++|+.||..
T Consensus       208 l~~g~~pf~~  217 (342)
T cd07879         208 MLTGKTLFKG  217 (342)
T ss_pred             HHhCCCCCCC
Confidence            9999999964

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.98  E-value=2.1e-32  Score=225.62  Aligned_cols=152  Identities=22%  Similarity=0.306  Sum_probs=129.2

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCc------ceEEEEecCCCCHHHhhcCCCc---hHHHHHHHHHHHhchhh
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPI------PILVFQSVEYGTLRDCIFGAPL---PRLKIASDIVNSLAYLH   82 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~------~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~i~~~l~~lh   82 (241)
                      ....+.+|+.++++++|+|++++.+++...+.      .++|+||+ +++|.+++.....   ....++.+++.||.|||
T Consensus        57 ~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~l~~~~~~~~~~ql~~aL~~LH  135 (343)
T cd07851          57 HAKRTYRELRLLKHMDHENVIGLLDVFTPASSLEDFQDVYLVTHLM-GADLNNIVKCQKLSDDHIQFLVYQILRGLKYIH  135 (343)
T ss_pred             HHHHHHHHHHHHHhccCCCHHHHHHHhhccccccccccEEEEEecC-CCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            45667889999999999999999998875544      89999999 5799998876443   46788999999999999


Q ss_pred             cCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc-cCCCcchhhHHHHHHHH
Q 044022           83 FGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI-CVLNEKSNVFSFGAFLF  161 (241)
Q Consensus        83 ~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~~~  161 (241)
                         +.+++|+||+|+||+++.++.++|+|||.+.......     ....++..|+|||.+.+ ..++.++||||||+++|
T Consensus       136 ---~~gi~H~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGv~l~  207 (343)
T cd07851         136 ---SAGIIHRDLKPSNIAVNEDCELKILDFGLARHTDDEM-----TGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA  207 (343)
T ss_pred             ---HCCeecCCCCHHHeEECCCCCEEEccccccccccccc-----cCCcccccccCHHHHhCCCCCCchHhHHHHHHHHH
Confidence               8999999999999999999999999999987654321     22356788999998865 36788999999999999


Q ss_pred             HHHhcCccccc
Q 044022          162 ELLAGRIHIWD  172 (241)
Q Consensus       162 ~~~~g~~p~~~  172 (241)
                      ++++|+.||..
T Consensus       208 elltg~~pf~~  218 (343)
T cd07851         208 ELLTGKTLFPG  218 (343)
T ss_pred             HHHhCCCCCCC
Confidence            99999999954

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.98  E-value=5.7e-32  Score=223.16  Aligned_cols=152  Identities=22%  Similarity=0.301  Sum_probs=127.3

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeC------CcceEEEEecCCCCHHHhhcCCCc---hHHHHHHHHHHHhchhh
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQT------PIPILVFQSVEYGTLRDCIFGAPL---PRLKIASDIVNSLAYLH   82 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~------~~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~i~~~l~~lh   82 (241)
                      ..+.+.+|++++++++|+||+++++++...      ...+++++++ +++|.+.+.....   .+..++.|++.|+.|||
T Consensus        59 ~~~~~~~Ei~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~~~~-~~~L~~~~~~~~l~~~~~~~i~~qi~~aL~~LH  137 (345)
T cd07877          59 HAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLM-GADLNNIVKCQKLTDDHVQFLIYQILRGLKYIH  137 (345)
T ss_pred             HHHHHHHHHHHHHHcCCCcccceeeeeeecccccccccEEEEehhc-ccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            356788999999999999999999988643      3467888887 7899888765433   46778999999999999


Q ss_pred             cCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc-cCCCcchhhHHHHHHHH
Q 044022           83 FGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI-CVLNEKSNVFSFGAFLF  161 (241)
Q Consensus        83 ~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~~~  161 (241)
                         +.+++|+||||+||+++.++.++|+|||++.......     ....++..|+|||.+.+ ..++.++|+||||+++|
T Consensus       138 ---~~~ivH~dlkp~NIll~~~~~~kl~dfg~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~  209 (345)
T cd07877         138 ---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEM-----TGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA  209 (345)
T ss_pred             ---HCCeeecCCChHHEEEcCCCCEEEecccccccccccc-----cccccCCCccCHHHHhCccCCCchhhHHHHHHHHH
Confidence               8999999999999999999999999999987543321     22356888999998865 46788999999999999


Q ss_pred             HHHhcCccccc
Q 044022          162 ELLAGRIHIWD  172 (241)
Q Consensus       162 ~~~~g~~p~~~  172 (241)
                      ++++|+.||..
T Consensus       210 el~~g~~pf~~  220 (345)
T cd07877         210 ELLTGRTLFPG  220 (345)
T ss_pred             HHHhCCCCCCC
Confidence            99999999854

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.98  E-value=3.1e-32  Score=210.91  Aligned_cols=226  Identities=19%  Similarity=0.265  Sum_probs=166.9

Q ss_pred             CcccccccccccHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIV   75 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~   75 (241)
                      ||+..+- .-+...+..+|++++.+. .|+||+.++++|+++..+|+|||-|.||+|...+++..    .....+.++|+
T Consensus       108 VKiidKq-~gHsR~RvfREVe~f~~Cqgh~nilqLiefFEdd~~FYLVfEKm~GGplLshI~~~~~F~E~EAs~vvkdia  186 (463)
T KOG0607|consen  108 VKIIDKQ-PGHSRSRVFREVETFYQCQGHKNILQLIEFFEDDTRFYLVFEKMRGGPLLSHIQKRKHFNEREASRVVKDIA  186 (463)
T ss_pred             hhhhhcC-CchHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceEEEEEecccCchHHHHHHHhhhccHHHHHHHHHHHH
Confidence            4555443 446788899999999999 69999999999999999999999999999999887642    24677899999


Q ss_pred             HHhchhhcCCCCCceeccCCCCCeeecCCC---CeEEeeccCceecC--CC---CcceeecccccCCCccCccccc----
Q 044022           76 NSLAYLHFGFPRPIVLRNFKTQNILFNEEN---VAKWFDFLLSISIP--EG---ETHITTDRVIGTRGYSAPEYIS----  143 (241)
Q Consensus        76 ~~l~~lh~~~~~~ivh~dl~~~nil~~~~~---~~~l~df~~~~~~~--~~---~~~~~~~~~~~~~~~~aPE~~~----  143 (241)
                      .||.|||   .+||.|||+||+|||...-+   -+||+||.+...+.  .+   .......+.+|+..|||||+..    
T Consensus       187 ~aLdFlH---~kgIAHRDlKPENiLC~~pn~vsPvKiCDfDLgSg~k~~~~~spastP~L~tPvGSAEfMAPEVVd~fv~  263 (463)
T KOG0607|consen  187 SALDFLH---TKGIAHRDLKPENILCESPNKVSPVKICDFDLGSGIKLNNDCSPASTPELLTPVGSAEFMAPEVVDVFVD  263 (463)
T ss_pred             HHHHHHh---hcCcccccCCccceeecCCCCcCceeeeccccccccccCCCCCCCCCccccCcccchhhcchhHHhhhcc
Confidence            9999999   99999999999999996554   46999997754322  11   1112234578999999999873    


Q ss_pred             -ccCCCcchhhHHHHHHHHHHHhcCcccccccccCCCcc--cchHHH---HHHHhhhcccCCCCCCccccCCCchhHHHH
Q 044022          144 -ICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHG--CFFNEY---LKNYLEDKRFTGIPAPIIVQDIPCIEKEQQ  217 (241)
Q Consensus       144 -~~~~~~~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (241)
                       ...|+.++|.||||+|+|-|++|.+||...-.+.....  +.=...   +..-..++. -++++..+         ...
T Consensus       264 qA~~YDKrCDlwSLGvIlYImLsGYpPFvG~Cg~dCGWdrGe~Cr~CQ~~LFesIQEGk-YeFPdkdW---------ahI  333 (463)
T KOG0607|consen  264 QATFYDKRCDLWSLGVILYIMLSGYPPFVGHCGADCGWDRGEVCRVCQNKLFESIQEGK-YEFPDKDW---------AHI  333 (463)
T ss_pred             ccccccccccHHHHHHHHHHHHhCCCCccCccCCcCCccCCCccHHHHHHHHHHHhccC-CcCChhhh---------HHh
Confidence             23688999999999999999999999966433321111  111111   111112222 23444333         344


Q ss_pred             HHHHHHHHHHhccCCCCCCCCCC
Q 044022          218 LHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       218 ~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                      +....+++...|..|+..|.++.
T Consensus       334 S~eakdlisnLlvrda~~rlsa~  356 (463)
T KOG0607|consen  334 SSEAKDLISNLLVRDAKQRLSAA  356 (463)
T ss_pred             hHHHHHHHHHHHhccHHhhhhhh
Confidence            56778999999999999998874

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.98  E-value=4.1e-32  Score=223.77  Aligned_cols=158  Identities=18%  Similarity=0.274  Sum_probs=126.9

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeC--------------CcceEEEEecCCCCHHHhhcCCCc---hHHHHHHH
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQT--------------PIPILVFQSVEYGTLRDCIFGAPL---PRLKIASD   73 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~--------------~~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~   73 (241)
                      ...+.+.+|++++++++||||+++++++...              ...++|+||+. ++|.+++.....   ....++.|
T Consensus        44 ~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~~l~~~~~~~~~~q  122 (342)
T cd07854          44 QSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVGSLTELNSVYIVQEYME-TDLANVLEQGPLSEEHARLFMYQ  122 (342)
T ss_pred             chHHHHHHHHHHHHhcCCCcchhhHhhhcccccccccccccccccceEEEEeeccc-ccHHHHHHcCCCCHHHHHHHHHH
Confidence            3466788999999999999999999876643              35789999997 699888865432   56788999


Q ss_pred             HHHHhchhhcCCCCCceeccCCCCCeeecC-CCCeEEeeccCceecCCCCcce-eecccccCCCccCcccccc-cCCCcc
Q 044022           74 IVNSLAYLHFGFPRPIVLRNFKTQNILFNE-ENVAKWFDFLLSISIPEGETHI-TTDRVIGTRGYSAPEYISI-CVLNEK  150 (241)
Q Consensus        74 i~~~l~~lh~~~~~~ivh~dl~~~nil~~~-~~~~~l~df~~~~~~~~~~~~~-~~~~~~~~~~~~aPE~~~~-~~~~~~  150 (241)
                      |+.||.|||   +.+++|+||||+||+++. ++.++++|||.+.......... ......++..|+|||.+.. ..++.+
T Consensus       123 i~~aL~~LH---~~givH~dikp~Nili~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~  199 (342)
T cd07854         123 LLRGLKYIH---SANVLHRDLKPANVFINTEDLVLKIGDFGLARIVDPHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTKA  199 (342)
T ss_pred             HHHHHHHHH---hCCcccCCCCHHHEEEcCCCceEEECCcccceecCCccccccccccccccccccCHHHHhCccccCch
Confidence            999999999   899999999999999975 4578999999987653321111 1122356788999998754 457889


Q ss_pred             hhhHHHHHHHHHHHhcCccccc
Q 044022          151 SNVFSFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       151 ~Di~s~G~~~~~~~~g~~p~~~  172 (241)
                      +||||||+++|+|++|+.||..
T Consensus       200 ~DiwSlGvil~el~~g~~pf~~  221 (342)
T cd07854         200 IDMWAAGCIFAEMLTGKPLFAG  221 (342)
T ss_pred             hhHHHHHHHHHHHHhCCCCCCC
Confidence            9999999999999999999964

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.97  E-value=2e-31  Score=219.71  Aligned_cols=152  Identities=20%  Similarity=0.252  Sum_probs=128.6

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCC------cceEEEEecCCCCHHHhhcCCCc---hHHHHHHHHHHHhchhh
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTP------IPILVFQSVEYGTLRDCIFGAPL---PRLKIASDIVNSLAYLH   82 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~------~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~i~~~l~~lh   82 (241)
                      ....+.+|++++++++||||+++++++....      .+++|+||+ +++|.+++.....   ....++.|++.|+.|||
T Consensus        57 ~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~-~~~l~~~~~~~~l~~~~~~~i~~qi~~al~~LH  135 (343)
T cd07880          57 FAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLDRFHDFYLVMPFM-GTDLGKLMKHEKLSEDRIQFLVYQMLKGLKYIH  135 (343)
T ss_pred             HHHHHHHHHHHHHhcCCCCccceeeeecCCccccccceEEEEEecC-CCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            3556889999999999999999999987554      358999999 6899988765433   46778999999999999


Q ss_pred             cCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc-cCCCcchhhHHHHHHHH
Q 044022           83 FGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI-CVLNEKSNVFSFGAFLF  161 (241)
Q Consensus        83 ~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~~~  161 (241)
                         +.+++|+||+|+||+++.++.++++|||.+.......     ....++..|+|||.+.+ ..++.++|+||||+++|
T Consensus       136 ---~~gi~H~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~ll~  207 (343)
T cd07880         136 ---AAGIIHRDLKPGNLAVNEDCELKILDFGLARQTDSEM-----TGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMA  207 (343)
T ss_pred             ---hCCeecCCCCHHHEEEcCCCCEEEeecccccccccCc-----cccccCCcccCHHHHhCCCCCCcHHHHHHHHHHHH
Confidence               8999999999999999999999999999987543321     22356788999999875 35788999999999999


Q ss_pred             HHHhcCccccc
Q 044022          162 ELLAGRIHIWD  172 (241)
Q Consensus       162 ~~~~g~~p~~~  172 (241)
                      ++++|..||..
T Consensus       208 ~l~~g~~pf~~  218 (343)
T cd07880         208 EMLTGKPLFKG  218 (343)
T ss_pred             HHHhCCCCCCC
Confidence            99999999964

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.97  E-value=2e-31  Score=218.87  Aligned_cols=157  Identities=21%  Similarity=0.231  Sum_probs=127.7

Q ss_pred             cHHHHHHHHHHHHhc-CCCcccceeeeeeeC----CcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhh
Q 044022           12 TYGSCINNITYAAQM-SHNHILKRIGCCLQT----PIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLH   82 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~----~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh   82 (241)
                      ..+.+.+|+.+++++ .||||+++++.+...    ...+++++++. ++|.+++.....    ....++.|++.||.|||
T Consensus        44 ~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~~~e~~~-~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH  122 (332)
T cd07857          44 LAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFNELYLYEELME-ADLHQIIRSGQPLTDAHFQSFIYQILCGLKYIH  122 (332)
T ss_pred             hHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCCcEEEEEeccc-CCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            356788999999999 599999999875432    35688889885 689988865422    45778999999999999


Q ss_pred             cCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcce--eecccccCCCccCcccccc-cCCCcchhhHHHHHH
Q 044022           83 FGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHI--TTDRVIGTRGYSAPEYISI-CVLNEKSNVFSFGAF  159 (241)
Q Consensus        83 ~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~--~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~  159 (241)
                         +.+++|+||||+||+++.++.++|+|||.+..........  ......++..|+|||++.+ ..++.++|+||+|++
T Consensus       123 ---~~givH~dlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~Di~slGv~  199 (332)
T cd07857         123 ---SANVLHRDLKPGNLLVNADCELKICDFGLARGFSENPGENAGFMTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCI  199 (332)
T ss_pred             ---hCCcccCCCCHHHeEEcCCCCEEeCcCCCceecccccccccccccCcccCccccCcHHHhCCCCCCcHHHHHHHHHH
Confidence               9999999999999999999999999999987654322111  1123467889999998765 467899999999999


Q ss_pred             HHHHHhcCccccc
Q 044022          160 LFELLAGRIHIWD  172 (241)
Q Consensus       160 ~~~~~~g~~p~~~  172 (241)
                      +|++++|++||..
T Consensus       200 l~~l~~g~~pf~~  212 (332)
T cd07857         200 LAELLGRKPVFKG  212 (332)
T ss_pred             HHHHHhCCcCCCC
Confidence            9999999999854

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.97  E-value=8.5e-33  Score=235.91  Aligned_cols=214  Identities=21%  Similarity=0.272  Sum_probs=174.4

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc-----hHHHHHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL-----PRLKIASDIV   75 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-----~~~~~~~~i~   75 (241)
                      ||++..........+++.|+-+|.+|+|||+++++++|..+. +-||++|++.|+|.++++.+..     ..+.|..||+
T Consensus       730 iKvl~~~t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~-~qlvtq~mP~G~LlDyvr~hr~~igsq~lLnw~~QIA  808 (1177)
T KOG1025|consen  730 IKVLIEFTSPKASIELLDEALRMASLDHPNLLRLLGVCMLST-LQLVTQLMPLGCLLDYVREHRDNIGSQDLLNWCYQIA  808 (1177)
T ss_pred             EEEeeccCCchhhHHHHHHHHHHhcCCCchHHHHhhhcccch-HHHHHHhcccchHHHHHHHhhccccHHHHHHHHHHHH
Confidence            577777777778899999999999999999999999998776 7899999999999999977633     3578999999


Q ss_pred             HHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHH
Q 044022           76 NSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFS  155 (241)
Q Consensus        76 ~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s  155 (241)
                      +|+.|||   ++++|||||-++|+|+..-..+||.|||+++.+.............-++.|+|-|.+....++.+|||||
T Consensus       809 kgM~YLe---~qrlVHrdLaaRNVLVksP~hvkitdfgla~ll~~d~~ey~~~~gK~pikwmale~i~~~~~thqSDVWs  885 (1177)
T KOG1025|consen  809 KGMKYLE---EQRLVHRDLAARNVLVKSPNHVKITDFGLAKLLAPDEKEYSAPGGKVPIKWMALESIRIRKYTHQSDVWS  885 (1177)
T ss_pred             HHHHHHH---hcchhhhhhhhhheeecCCCeEEEEecchhhccCcccccccccccccCcHHHHHHHhhccCCCchhhhhh
Confidence            9999999   9999999999999999999999999999998877654443334444567899999999999999999999


Q ss_pred             HHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCC
Q 044022          156 FGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPE  234 (241)
Q Consensus       156 ~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~  234 (241)
                      |||.+||++| |..|+....          .+-..++.+.+...  ..+           ..++-++..++.+||..|+.
T Consensus       886 fGVtiWElmTFGa~Py~gi~----------~~eI~dlle~geRL--sqP-----------piCtiDVy~~mvkCwmid~~  942 (1177)
T KOG1025|consen  886 FGVTIWELMTFGAKPYDGIP----------AEEIPDLLEKGERL--SQP-----------PICTIDVYMVMVKCWMIDAD  942 (1177)
T ss_pred             hhhhHHHHHhcCCCccCCCC----------HHHhhHHHhccccC--CCC-----------CCccHHHHHHHHHHhccCcc
Confidence            9999999998 888875421          11223333333221  111           14556889999999999999


Q ss_pred             CCCCCCC
Q 044022          235 DRPTMVD  241 (241)
Q Consensus       235 ~Rpt~~e  241 (241)
                      .||++++
T Consensus       943 ~rp~fke  949 (1177)
T KOG1025|consen  943 SRPTFKE  949 (1177)
T ss_pred             cCccHHH
Confidence            9999863

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.97  E-value=1.3e-32  Score=217.19  Aligned_cols=151  Identities=21%  Similarity=0.233  Sum_probs=128.5

Q ss_pred             HHHHHHHHHHHHhcC-C-C----cccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc------hHHHHHHHHHHHhch
Q 044022           13 YGSCINNITYAAQMS-H-N----HILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL------PRLKIASDIVNSLAY   80 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~-h-~----~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~------~~~~~~~~i~~~l~~   80 (241)
                      .+..+-|+++|+++. + |    .+|.+.+||.-.++.|+|+|.+ |.|+.+++.++..      .+..++.|++.++++
T Consensus       129 reAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdyrghiCivfell-G~S~~dFlk~N~y~~fpi~~ir~m~~QL~~sv~f  207 (415)
T KOG0671|consen  129 REAALIEIEVLQKINESDPNGKFRCVQMRDWFDYRGHICIVFELL-GLSTFDFLKENNYIPFPIDHIRHMGYQLLESVAF  207 (415)
T ss_pred             hhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhccCceEEEEecc-ChhHHHHhccCCccccchHHHHHHHHHHHHHHHH
Confidence            445667999999993 2 3    4678899999999999999999 6799999988632      467889999999999


Q ss_pred             hhcCCCCCceeccCCCCCeeecC--------------------CCCeEEeeccCceecCCCCcceeecccccCCCccCcc
Q 044022           81 LHFGFPRPIVLRNFKTQNILFNE--------------------ENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPE  140 (241)
Q Consensus        81 lh~~~~~~ivh~dl~~~nil~~~--------------------~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE  140 (241)
                      ||   +.+++|.||||+|||+..                    +..++++|||.+.......     +..+.|.-|+|||
T Consensus       208 Lh---~~kl~HTDLKPENILfvss~~~~~~~~k~~~~~~r~~ks~~I~vIDFGsAtf~~e~h-----s~iVsTRHYRAPE  279 (415)
T KOG0671|consen  208 LH---DLKLTHTDLKPENILFVSSEYFKTYNPKKKVCFIRPLKSTAIKVIDFGSATFDHEHH-----STIVSTRHYRAPE  279 (415)
T ss_pred             HH---hcceeecCCChheEEEeccceEEEeccCCccceeccCCCcceEEEecCCcceeccCc-----ceeeeccccCCch
Confidence            99   999999999999999832                    3358999999997655443     4457789999999


Q ss_pred             cccccCCCcchhhHHHHHHHHHHHhcCccccc
Q 044022          141 YISICVLNEKSNVFSFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       141 ~~~~~~~~~~~Di~s~G~~~~~~~~g~~p~~~  172 (241)
                      ++.+.+|+.++||||+|||++|+++|..-|+.
T Consensus       280 ViLgLGwS~pCDvWSiGCIL~ElytG~~LFqt  311 (415)
T KOG0671|consen  280 VILGLGWSQPCDVWSIGCILVELYTGETLFQT  311 (415)
T ss_pred             heeccCcCCccCceeeeeEEEEeeccceeccc
Confidence            99999999999999999999999999988754

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.97  E-value=2.4e-31  Score=207.92  Aligned_cols=203  Identities=24%  Similarity=0.282  Sum_probs=160.3

Q ss_pred             HHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCCCC
Q 044022           13 YGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFPRP   88 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~~~   88 (241)
                      .+.+.+|++.+++++|+|++++++++......++++|++.+++|..++....    .....++.+++.++.+||   +.+
T Consensus        31 ~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh---~~~  107 (244)
T smart00220       31 RERILREISILKKLKHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDLLKKRGRLSEDEARFYARQILSALEYLH---SNG  107 (244)
T ss_pred             HHHHHHHHHHHHhCCCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH---HcC
Confidence            6889999999999999999999999999899999999999889999986643    246788999999999999   899


Q ss_pred             ceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcCc
Q 044022           89 IVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRI  168 (241)
Q Consensus        89 ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~~  168 (241)
                      ++|+||+|.||+++.++.++++|||.+.......   ......++..|++||......++.++|+||||++++++++|..
T Consensus       108 i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~~---~~~~~~~~~~~~~pE~~~~~~~~~~~Di~slG~~l~~l~~~~~  184 (244)
T smart00220      108 IIHRDLKPENILLDEDGHVKLADFGLARQLDPGG---LLTTFVGTPEYMAPEVLLGKGYGKAVDVWSLGVILYELLTGKP  184 (244)
T ss_pred             eecCCcCHHHeEECCCCcEEEccccceeeecccc---ccccccCCcCCCCHHHHccCCCCchhhHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999988765432   1123457788999999988888999999999999999999999


Q ss_pred             ccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          169 HIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       169 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ||....        .... ...............    .       ...+..+.+++.+||..+|++|||+.|
T Consensus       185 p~~~~~--------~~~~-~~~~~~~~~~~~~~~----~-------~~~~~~~~~~i~~~l~~~p~~Rp~~~~  237 (244)
T smart00220      185 PFPGDD--------QLLE-LFKKIGKPKPPFPPP----E-------WKISPEAKDLIRKLLVKDPEKRLTAEE  237 (244)
T ss_pred             CCCCCC--------cHHH-HHHHHhccCCCCccc----c-------ccCCHHHHHHHHHHccCCchhccCHHH
Confidence            985421        0111 111111111100000    0       002357889999999999999999853

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.97  E-value=6.2e-31  Score=225.87  Aligned_cols=204  Identities=20%  Similarity=0.273  Sum_probs=162.1

Q ss_pred             ccHHHHHHHHHHHHhc-CCCcccceeeeeee-----CCcceEEEEecCCCCHHHhhcCCCch------HHHHHHHHHHHh
Q 044022           11 HTYGSCINNITYAAQM-SHNHILKRIGCCLQ-----TPIPILVFQSVEYGTLRDCIFGAPLP------RLKIASDIVNSL   78 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~-----~~~~~lv~e~~~~~sL~~~l~~~~~~------~~~~~~~i~~~l   78 (241)
                      +..++...|.++++.+ .|||++.++|++..     ++++|+|||||.+||..+++++....      +..++..++.|+
T Consensus        57 d~deEiE~eynil~~~~~hpnv~~fyg~~~k~~~~~~DqLWLVMEfC~gGSVTDLVKn~~g~rl~E~~IaYI~re~lrgl  136 (953)
T KOG0587|consen   57 DEEEEIELEYNMLKKYSHHPNVATFYGAFIKKDPGNGDQLWLVMEFCGGGSVTDLVKNTKGNRLKEEWIAYILREILRGL  136 (953)
T ss_pred             cccHHHHHHHHHHHhccCCCCcceEEEEEEEecCCCCCeEEEEeeccCCccHHHHHhhhcccchhhHHHHHHHHHHHHHH
Confidence            3556677899999998 68999999999874     45899999999999999999876432      456788999999


Q ss_pred             chhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc-----CCCcchhh
Q 044022           79 AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-----VLNEKSNV  153 (241)
Q Consensus        79 ~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-----~~~~~~Di  153 (241)
                      .+||   ...++|||+|-.|||++.++.+|+.|||++..+....  ...++.+||++|||||++...     .|+..+|+
T Consensus       137 ~HLH---~nkviHRDikG~NiLLT~e~~VKLvDFGvSaQldsT~--grRnT~iGtP~WMAPEViac~e~~d~tyd~R~D~  211 (953)
T KOG0587|consen  137 AHLH---NNKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDSTV--GRRNTFIGTPYWMAPEVIACDESPDATYDYRSDL  211 (953)
T ss_pred             HHHh---hcceeeecccCceEEEeccCcEEEeeeeeeeeeeccc--ccccCcCCCcccccceeeecccCCCCCcccccch
Confidence            9999   9999999999999999999999999999998765432  234567899999999999643     57789999


Q ss_pred             HHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCC
Q 044022          154 FSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSP  233 (241)
Q Consensus       154 ~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p  233 (241)
                      ||||++..||..|.+|+.++-.            ++.+.   .+.+.+.+.+..      .+.-++.+.++|..||.+|.
T Consensus       212 WsLGITaIEladG~PPl~DmHP------------mraLF---~IpRNPPPkLkr------p~kWs~~FndFIs~cL~Kd~  270 (953)
T KOG0587|consen  212 WSLGITAIEMAEGAPPLCDMHP------------MRALF---LIPRNPPPKLKR------PKKWSKKFNDFISTCLVKDY  270 (953)
T ss_pred             hhccceeehhcCCCCCccCcch------------hhhhc---cCCCCCCccccc------hhhHHHHHHHHHHHHHhhcc
Confidence            9999999999999999977311            11111   111222222221      23455789999999999999


Q ss_pred             CCCCCCC
Q 044022          234 EDRPTMV  240 (241)
Q Consensus       234 ~~Rpt~~  240 (241)
                      ..||+..
T Consensus       271 e~RP~~~  277 (953)
T KOG0587|consen  271 EQRPSTE  277 (953)
T ss_pred             ccCcchh
Confidence            9999875

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=3.1e-31  Score=232.78  Aligned_cols=205  Identities=19%  Similarity=0.202  Sum_probs=161.2

Q ss_pred             ccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-c---hHHHHHHHHHHHhchhhcC
Q 044022            9 HRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-L---PRLKIASDIVNSLAYLHFG   84 (241)
Q Consensus         9 ~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-~---~~~~~~~~i~~~l~~lh~~   84 (241)
                      .+....-|..|=.+|.--..+.||.++-.|++++++|+||||++||+|.+++.+.. .   ....++..|+.||.-+|  
T Consensus       115 Kr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD~~~LYlVMdY~pGGDlltLlSk~~~~pE~~ArFY~aEiVlAldslH--  192 (1317)
T KOG0612|consen  115 KRAETACFREERDIMVFGNSEWIVQLHYAFQDERYLYLVMDYMPGGDLLTLLSKFDRLPEDWARFYTAEIVLALDSLH--  192 (1317)
T ss_pred             hchhHHHHHHHhHHHHcCCcHHHHHHHHHhcCccceEEEEecccCchHHHHHhhcCCChHHHHHHHHHHHHHHHHHHH--
Confidence            34455667788888888889999999999999999999999999999999998876 2   24567889999999999  


Q ss_pred             CCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc-----cCCCcchhhHHHHHH
Q 044022           85 FPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI-----CVLNEKSNVFSFGAF  159 (241)
Q Consensus        85 ~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-----~~~~~~~Di~s~G~~  159 (241)
                       +.|+|||||||+|||+|..|++||+|||.|-.+...+.. .++..+|||-|.+||++..     +.|++.+|.||+||+
T Consensus       193 -~mgyVHRDiKPDNvLld~~GHikLADFGsClkm~~dG~V-~s~~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~  270 (1317)
T KOG0612|consen  193 -SMGYVHRDIKPDNVLLDKSGHIKLADFGSCLKMDADGTV-RSSVAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVF  270 (1317)
T ss_pred             -hccceeccCCcceeEecccCcEeeccchhHHhcCCCCcE-EeccccCCCCccCHHHHHhhcCCccccCCccchhhhHHH
Confidence             999999999999999999999999999999888755443 3466789999999999953     568899999999999


Q ss_pred             HHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCC
Q 044022          160 LFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT  238 (241)
Q Consensus       160 ~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt  238 (241)
                      +|||+.|..||+.         ....+..........-..+++.           ..-++..++||.+.+. +|+.|..
T Consensus       271 ~YEMlyG~TPFYa---------dslveTY~KIm~hk~~l~FP~~-----------~~VSeeakdLI~~ll~-~~e~RLg  328 (1317)
T KOG0612|consen  271 MYEMLYGETPFYA---------DSLVETYGKIMNHKESLSFPDE-----------TDVSEEAKDLIEALLC-DREVRLG  328 (1317)
T ss_pred             HHHHHcCCCcchH---------HHHHHHHHHHhchhhhcCCCcc-----------cccCHHHHHHHHHHhc-Chhhhcc
Confidence            9999999999976         2233333333333322233311           1234667788877553 5666654

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.97  E-value=1.4e-32  Score=207.90  Aligned_cols=214  Identities=20%  Similarity=0.239  Sum_probs=152.6

Q ss_pred             cccccccccccHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC--------CchHH-HHH
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA--------PLPRL-KIA   71 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~--------~~~~~-~~~   71 (241)
                      |............+++.|.++..+= +-||||+++|.+..++..|+-||+|. .||.-+-+.-        +..++ ++.
T Consensus        95 KrIr~~n~~keq~rll~e~d~~mks~~cp~IVkfyGa~F~EGdcWiCMELMd-~SlDklYk~vy~vq~~~ipE~Ilg~It  173 (361)
T KOG1006|consen   95 KRIRSNNIEKEQKRLLMEHDTVMKSSNCPNIVKFYGALFSEGDCWICMELMD-ISLDKLYKRVYSVQKSRIPENILGHIT  173 (361)
T ss_pred             EEeeeccchHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhcCCceeeeHHHHh-hhHHHHHHHHHHHHhccCcHhhhhhee
Confidence            3333333334567788888877765 56999999999999999999999996 6775543211        11122 344


Q ss_pred             HHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc--CCCc
Q 044022           72 SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC--VLNE  149 (241)
Q Consensus        72 ~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~--~~~~  149 (241)
                      ...+.||.||..  ...|+|||+||+|||++..|.+|++|||.+..+..+-..   +.-.|..+|+|||.+...  .++.
T Consensus       174 vatV~AL~yLK~--~lkiIHRDvKPSNILldr~G~vKLCDFGIcGqLv~SiAk---T~daGCrpYmAPERi~p~~~gyDi  248 (361)
T KOG1006|consen  174 VATVDALDYLKE--ELKIIHRDVKPSNILLDRHGDVKLCDFGICGQLVDSIAK---TVDAGCRPYMAPERIDPSDKGYDI  248 (361)
T ss_pred             eeehhHHHHHHH--HhhhhhccCChhheEEecCCCEeeecccchHhHHHHHHh---hhccCCccccChhccCCccCCcch
Confidence            456789999987  778999999999999999999999999999766543221   223688899999998643  5899


Q ss_pred             chhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhh--hcccCCCCCCccccCCCchhHHHHHHHHHHHHHH
Q 044022          150 KSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLE--DKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLE  227 (241)
Q Consensus       150 ~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  227 (241)
                      +||+||||+.+||+.||..|+..           |......+..  .+..     +.+..+..   .-..+..+..++..
T Consensus       249 RSDvWSLGITL~EvAtG~fPyr~-----------w~svfeql~~Vv~gdp-----p~l~~~~~---~~~~s~~~~~fint  309 (361)
T KOG1006|consen  249 RSDVWSLGITLYEVATGNFPYRK-----------WDSVFEQLCQVVIGDP-----PILLFDKE---CVHYSFSMVRFINT  309 (361)
T ss_pred             hhhhhhhcceEeeeecCCCCcch-----------HHHHHHHHHHHHcCCC-----CeecCccc---ccccCHHHHHHHHH
Confidence            99999999999999999999854           2222222111  1111     11111110   11355789999999


Q ss_pred             hccCCCCCCCCCC
Q 044022          228 CVNNSPEDRPTMV  240 (241)
Q Consensus       228 cl~~~p~~Rpt~~  240 (241)
                      |+.+|-++||...
T Consensus       310 Cl~Kd~~~Rpky~  322 (361)
T KOG1006|consen  310 CLIKDRSDRPKYD  322 (361)
T ss_pred             HhhcccccCcchh
Confidence            9999999999864

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=4.7e-31  Score=233.10  Aligned_cols=173  Identities=27%  Similarity=0.371  Sum_probs=123.3

Q ss_pred             ceEEEEecCCCCHHHhhcCCCc-----hHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceec
Q 044022           44 PILVFQSVEYGTLRDCIFGAPL-----PRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISI  118 (241)
Q Consensus        44 ~~lv~e~~~~~sL~~~l~~~~~-----~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~  118 (241)
                      +||-||||+..+|.+++..+-.     ..++++++|+.||+|+|   ++|++||||||.||+++.++.+||+|||++.-.
T Consensus       671 LYIQMEyCE~~ll~~iI~~N~~~~~~d~~wrLFreIlEGLaYIH---~~giIHRDLKP~NIFLd~~~~VKIGDFGLAt~~  747 (1351)
T KOG1035|consen  671 LYIQMEYCEKTLLRDIIRRNHFNSQRDEAWRLFREILEGLAYIH---DQGIIHRDLKPRNIFLDSRNSVKIGDFGLATDL  747 (1351)
T ss_pred             EEEEHhhhhhhHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHH---hCceeeccCCcceeEEcCCCCeeecccccchhh
Confidence            4788999988777887766533     35788999999999999   999999999999999999999999999998751


Q ss_pred             C----------------CCCcceeecccccCCCccCcccccccC---CCcchhhHHHHHHHHHHHhcCcccccccccCCC
Q 044022          119 P----------------EGETHITTDRVIGTRGYSAPEYISICV---LNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHD  179 (241)
Q Consensus       119 ~----------------~~~~~~~~~~~~~~~~~~aPE~~~~~~---~~~~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~  179 (241)
                      .                .+......+..+||.-|+|||++.+..   |+.|+||||+|+|++||+.-   |..       
T Consensus       748 ~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAPEll~~~~~~~Yn~KiDmYSLGIVlFEM~yP---F~T-------  817 (1351)
T KOG1035|consen  748 KENLESIDQDLSFSTNRAGSNDGDLTSQVGTALYVAPELLSDTSSNKYNSKIDMYSLGIVLFEMLYP---FGT-------  817 (1351)
T ss_pred             hhhhhhHhhccCccccccCCCCcccccccceeeeecHHHhcccccccccchhhhHHHHHHHHHHhcc---CCc-------
Confidence            1                011112335678999999999997654   99999999999999999864   422       


Q ss_pred             cccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          180 HGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                       .+.....+.++. .+.+.   .+   .++.   . .....-.++|+.|++.||++||||.|
T Consensus       818 -sMERa~iL~~LR-~g~iP---~~---~~f~---~-~~~~~e~slI~~Ll~hdP~kRPtA~e  867 (1351)
T KOG1035|consen  818 -SMERASILTNLR-KGSIP---EP---ADFF---D-PEHPEEASLIRWLLSHDPSKRPTATE  867 (1351)
T ss_pred             -hHHHHHHHHhcc-cCCCC---CC---cccc---c-ccchHHHHHHHHHhcCCCccCCCHHH
Confidence             011111111211 11111   11   0000   0 11133468999999999999999964

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.97  E-value=4.3e-30  Score=227.62  Aligned_cols=102  Identities=22%  Similarity=0.184  Sum_probs=92.7

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ....+.+|+.+++.++|+||+++++++...+..|+||||+.+++|.+++....    .....++.+|+.||.|||   ..
T Consensus        47 ~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lVmEy~~g~~L~~li~~~~~l~~~~~~~i~~qil~aL~yLH---~~  123 (669)
T cd05610          47 MVHQVQAERDALALSKSPFIVHLYYSLQSANNVYLVMEYLIGGDVKSLLHIYGYFDEEMAVKYISEVALALDYLH---RH  123 (669)
T ss_pred             HHHHHHHHHHHHHhcCCCCcCeEEEEEEECCEEEEEEeCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hC
Confidence            34678899999999999999999999999999999999999999999986532    246789999999999999   88


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCce
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSI  116 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~  116 (241)
                      +|+||||||+|||++.++.++|+|||+++
T Consensus       124 gIiHrDLKP~NILl~~~g~vkL~DFGls~  152 (669)
T cd05610         124 GIIHRDLKPDNMLISNEGHIKLTDFGLSK  152 (669)
T ss_pred             CEEeCCccHHHEEEcCCCCEEEEeCCCCc
Confidence            99999999999999999999999999875

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.97  E-value=3.8e-31  Score=226.19  Aligned_cols=202  Identities=23%  Similarity=0.303  Sum_probs=155.5

Q ss_pred             HHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC--Cc------hHHHHHHHHHHHhchhhc
Q 044022           13 YGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA--PL------PRLKIASDIVNSLAYLHF   83 (241)
Q Consensus        13 ~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~--~~------~~~~~~~~i~~~l~~lh~   83 (241)
                      .+-..+||+.|+.- +|||||++++.=.++.+.|+..|.|. .||.+++...  ..      ....++.|++.||++|| 
T Consensus       546 ~~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~YIalELC~-~sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLH-  623 (903)
T KOG1027|consen  546 FDFAQREIQLLQESDEHPNVIRYYCSEQDRQFLYIALELCA-CSLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLH-  623 (903)
T ss_pred             HHHHHHHHHHHHhccCCCceEEEEeeccCCceEEEEehHhh-hhHHHHHhccccchhhcccccHHHHHHHHHHHHHHHH-
Confidence            34567899999987 79999999999888899999999997 6999999874  11      23678899999999999 


Q ss_pred             CCCCCceeccCCCCCeeecC---C--CCeEEeeccCceecCCCCcc-eeecccccCCCccCcccccccCCCcchhhHHHH
Q 044022           84 GFPRPIVLRNFKTQNILFNE---E--NVAKWFDFLLSISIPEGETH-ITTDRVIGTRGYSAPEYISICVLNEKSNVFSFG  157 (241)
Q Consensus        84 ~~~~~ivh~dl~~~nil~~~---~--~~~~l~df~~~~~~~~~~~~-~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G  157 (241)
                        +.+||||||||.||||+.   +  ..++|+|||+++.+..+... .......||-+|.|||.+....-+.++||+|+|
T Consensus       624 --sl~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKkl~~~~sS~~r~s~~sGt~GW~APE~L~~~~~~~avDiFslG  701 (903)
T KOG1027|consen  624 --SLKIVHRDLKPQNILISVPSADGTLRAKISDFGLSKKLAGGKSSFSRLSGGSGTSGWQAPEQLREDRKTQAVDIFSLG  701 (903)
T ss_pred             --hcccccccCCCceEEEEccCCCcceeEEecccccccccCCCcchhhcccCCCCcccccCHHHHhccccCcccchhhcC
Confidence              899999999999999976   2  47899999999988765333 234566799999999999988888899999999


Q ss_pred             HHHHHHHhc-CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCC
Q 044022          158 AFLFELLAG-RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDR  236 (241)
Q Consensus       158 ~~~~~~~~g-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~R  236 (241)
                      |++|+.++| ..||.+....           ..+......-    ...+.+.      .++  ...+||.+|++.+|..|
T Consensus       702 CvfyYvltgG~HpFGd~~~R-----------~~NIl~~~~~----L~~L~~~------~d~--eA~dLI~~ml~~dP~~R  758 (903)
T KOG1027|consen  702 CVFYYVLTGGSHPFGDSLER-----------QANILTGNYT----LVHLEPL------PDC--EAKDLISRMLNPDPQLR  758 (903)
T ss_pred             ceEEEEecCCccCCCchHHh-----------hhhhhcCccc----eeeeccC------chH--HHHHHHHHhcCCCcccC
Confidence            999998886 8999762111           0011100000    0000000      011  67899999999999999


Q ss_pred             CCCCC
Q 044022          237 PTMVD  241 (241)
Q Consensus       237 pt~~e  241 (241)
                      |||.+
T Consensus       759 Psa~~  763 (903)
T KOG1027|consen  759 PSATD  763 (903)
T ss_pred             CCHHH
Confidence            99863

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.97  E-value=3e-30  Score=204.73  Aligned_cols=204  Identities=19%  Similarity=0.307  Sum_probs=164.0

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeC-CcceEEEEecCCCCHHHhhc-----CC-C------chHHHHHHHHHHHh
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQT-PIPILVFQSVEYGTLRDCIF-----GA-P------LPRLKIASDIVNSL   78 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-~~~~lv~e~~~~~sL~~~l~-----~~-~------~~~~~~~~~i~~~l   78 (241)
                      ....++.|.-.+.-+.|||+.++.+++.+. ..+++++.++.-|+|..|+.     +. .      .+...++.|++.|+
T Consensus       330 Qv~~~L~es~lly~~sH~nll~V~~V~ie~~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am  409 (563)
T KOG1024|consen  330 QVNLLLQESMLLYGASHPNLLSVLGVSIEDYATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAM  409 (563)
T ss_pred             HHHHHHHHHHHHhcCcCCCccceeEEEeeccCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHH
Confidence            345677888888888999999999988764 47788999998899999987     21 1      14567899999999


Q ss_pred             chhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHH
Q 044022           79 AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGA  158 (241)
Q Consensus        79 ~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~  158 (241)
                      +|||   +++++|.||.++|+++++..++||+|=.+++-+-....+...+....+..||+||.+....|+.++|+||||+
T Consensus       410 ~hlh---~~~ViHkDiAaRNCvIdd~LqVkltDsaLSRDLFP~DYhcLGDnEnRPvkWMslEal~n~~yssasDvWsfGV  486 (563)
T KOG1024|consen  410 EHLH---NHGVIHKDIAARNCVIDDQLQVKLTDSALSRDLFPGDYHCLGDNENRPVKWMSLEALQNSHYSSASDVWSFGV  486 (563)
T ss_pred             HHHH---hcCcccchhhhhcceehhheeEEeccchhccccCcccccccCCCCCCcccccCHHHHhhhhhcchhhhHHHHH
Confidence            9999   9999999999999999999999999988887655554555555666789999999999999999999999999


Q ss_pred             HHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCC
Q 044022          159 FLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRP  237 (241)
Q Consensus       159 ~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rp  237 (241)
                      ++||++| |+.|+.+...          ..+....+.+.....+-             .++.++..+|.-||+..|++||
T Consensus       487 llWELmtlg~~PyaeIDP----------fEm~~ylkdGyRlaQP~-------------NCPDeLf~vMacCWallpeeRP  543 (563)
T KOG1024|consen  487 LLWELMTLGKLPYAEIDP----------FEMEHYLKDGYRLAQPF-------------NCPDELFTVMACCWALLPEERP  543 (563)
T ss_pred             HHHHHHhcCCCCccccCH----------HHHHHHHhccceecCCC-------------CCcHHHHHHHHHHHhcCcccCC
Confidence            9999998 8889855322          22444445554332221             3446788999999999999999


Q ss_pred             CCCC
Q 044022          238 TMVD  241 (241)
Q Consensus       238 t~~e  241 (241)
                      +++|
T Consensus       544 sf~Q  547 (563)
T KOG1024|consen  544 SFSQ  547 (563)
T ss_pred             CHHH
Confidence            9864

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=1.4e-30  Score=212.33  Aligned_cols=156  Identities=18%  Similarity=0.274  Sum_probs=141.4

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ...+....|-++|...+.|.||++|..|.+++..||+||-|-||.|+..+.+...    ....++..+++|+.|||   .
T Consensus       462 kQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~kyvYmLmEaClGGElWTiLrdRg~Fdd~tarF~~acv~EAfeYLH---~  538 (732)
T KOG0614|consen  462 KQQEHVFSERNIMMECRSDFIVRLYRTFRDSKYVYMLMEACLGGELWTILRDRGSFDDYTARFYVACVLEAFEYLH---R  538 (732)
T ss_pred             hHHHHHHhHHHHHHhcCchHHHHHHHHhccchhhhhhHHhhcCchhhhhhhhcCCcccchhhhhHHHHHHHHHHHH---h
Confidence            3456678899999999999999999999999999999999999999999976532    45667889999999999   9


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhc
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      ++|+.|||||+|++++.+|-+||.|||+++.+..+...   .+.+||+.|.|||.+.....+.++|.||||+++||+++|
T Consensus       539 k~iIYRDLKPENllLd~~Gy~KLVDFGFAKki~~g~KT---wTFcGTpEYVAPEIILnKGHD~avDyWaLGIli~ELL~G  615 (732)
T KOG0614|consen  539 KGIIYRDLKPENLLLDNRGYLKLVDFGFAKKIGSGRKT---WTFCGTPEYVAPEIILNKGHDRAVDYWALGILIYELLTG  615 (732)
T ss_pred             cCceeccCChhheeeccCCceEEeehhhHHHhccCCce---eeecCCcccccchhhhccCcchhhHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999988776543   446899999999999999999999999999999999999


Q ss_pred             Cccccc
Q 044022          167 RIHIWD  172 (241)
Q Consensus       167 ~~p~~~  172 (241)
                      .+||..
T Consensus       616 ~pPFs~  621 (732)
T KOG0614|consen  616 SPPFSG  621 (732)
T ss_pred             CCCCCC
Confidence            999965

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=9.7e-30  Score=203.29  Aligned_cols=210  Identities=20%  Similarity=0.245  Sum_probs=162.0

Q ss_pred             Cccccccccc--ccHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC----CchHHHHHHH
Q 044022            1 MKFYGHEYHR--HTYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA----PLPRLKIASD   73 (241)
Q Consensus         1 iK~~~~~~~~--~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~----~~~~~~~~~~   73 (241)
                      ||++.++.--  +..+--+.|-++|..- +-|.+++++.+|+.-+.+|.||||+.||+|--.++.-    ++....++.+
T Consensus       379 iKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQTmDRLyFVMEyvnGGDLMyhiQQ~GkFKEp~AvFYAaE  458 (683)
T KOG0696|consen  379 IKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQVGKFKEPVAVFYAAE  458 (683)
T ss_pred             hhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhhhhhheeeEEEEecCchhhhHHHHhcccCCchhhhhhHH
Confidence            3455444321  2233344577777765 5689999999999999999999999999997766543    3467889999


Q ss_pred             HHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhh
Q 044022           74 IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNV  153 (241)
Q Consensus        74 i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di  153 (241)
                      |+.||-+||   +++|+.||||.+|+|++.+|++||+|||.++.--...  .+..+.+||+-|+|||.+...+|+.++|.
T Consensus       459 iaigLFFLh---~kgIiYRDLKLDNvmLd~eGHiKi~DFGmcKEni~~~--~TTkTFCGTPdYiAPEIi~YqPYgksvDW  533 (683)
T KOG0696|consen  459 IAIGLFFLH---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIFDG--VTTKTFCGTPDYIAPEIIAYQPYGKSVDW  533 (683)
T ss_pred             HHHHhhhhh---cCCeeeeeccccceEeccCCceEeeecccccccccCC--cceeeecCCCcccccceEEecccccchhH
Confidence            999999999   9999999999999999999999999999997543322  23355789999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCC
Q 044022          154 FSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSP  233 (241)
Q Consensus       154 ~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p  233 (241)
                      ||+|+++|||+.|++||..         +.-.+......+....           +|    ...+.+..+++...|.+.|
T Consensus       534 Wa~GVLLyEmlaGQpPFdG---------eDE~elF~aI~ehnvs-----------yP----KslSkEAv~ickg~ltK~P  589 (683)
T KOG0696|consen  534 WAFGVLLYEMLAGQPPFDG---------EDEDELFQAIMEHNVS-----------YP----KSLSKEAVAICKGLLTKHP  589 (683)
T ss_pred             HHHHHHHHHHHcCCCCCCC---------CCHHHHHHHHHHccCc-----------Cc----ccccHHHHHHHHHHhhcCC
Confidence            9999999999999999954         2333444444332211           11    1233567789999999999


Q ss_pred             CCCCCC
Q 044022          234 EDRPTM  239 (241)
Q Consensus       234 ~~Rpt~  239 (241)
                      .+|..+
T Consensus       590 ~kRLGc  595 (683)
T KOG0696|consen  590 GKRLGC  595 (683)
T ss_pred             ccccCC
Confidence            999754

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.96  E-value=1.1e-30  Score=201.97  Aligned_cols=224  Identities=19%  Similarity=0.229  Sum_probs=161.6

Q ss_pred             ccccHHHHHHHHHHHHhcCCCcccceeeeeeeCC------cceEEEEecCCCCHHHhhcCCCc--hHHHHHHHHHHHhch
Q 044022            9 HRHTYGSCINNITYAAQMSHNHILKRIGCCLQTP------IPILVFQSVEYGTLRDCIFGAPL--PRLKIASDIVNSLAY   80 (241)
Q Consensus         9 ~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~------~~~lv~e~~~~~sL~~~l~~~~~--~~~~~~~~i~~~l~~   80 (241)
                      +....++..+|..++..+.|+||++++.+|.-..      ..|+|||+|. .+|.+.+.....  +...+..|++.|+++
T Consensus        55 n~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~~e~y~v~e~m~-~nl~~vi~~elDH~tis~i~yq~~~~ik~  133 (369)
T KOG0665|consen   55 NQTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEFQEVYLVMELMD-ANLCQVILMELDHETISYILYQMLCGIKH  133 (369)
T ss_pred             cCccchhhhhhhhhhhhhcccceeeeeeccCccccHHHHHhHHHHHHhhh-hHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            3456788899999999999999999999998543      5799999996 799998764322  456788999999999


Q ss_pred             hhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHH
Q 044022           81 LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFL  160 (241)
Q Consensus        81 lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~  160 (241)
                      ||   +.+|+||||||+||++..+..+||.|||+++.-...   ...+-.+.+..|+|||++.+..+...+||||+||++
T Consensus       134 lh---s~~IihRdLkPsnivv~~~~~lKi~dfg~ar~e~~~---~~mtpyVvtRyyrapevil~~~~ke~vdiwSvGci~  207 (369)
T KOG0665|consen  134 LH---SAGIIHRDLKPSNIVVNSDCTLKILDFGLARTEDTD---FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIM  207 (369)
T ss_pred             HH---hcceeecccCcccceecchhheeeccchhhcccCcc---cccCchhheeeccCchheeccCCcccchhhhhhhHH
Confidence            99   999999999999999999999999999999764433   122345678899999999999999999999999999


Q ss_pred             HHHHhcCcccccccc---------cCCCcccchHH----HHHHHhh-hccc------CCCCCCccccCCCchhHHHHHHH
Q 044022          161 FELLAGRIHIWDLLK---------DTHDHGCFFNE----YLKNYLE-DKRF------TGIPAPIIVQDIPCIEKEQQLHA  220 (241)
Q Consensus       161 ~~~~~g~~p~~~~~~---------~~~~~~~~~~~----~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~  220 (241)
                      .||++|..-|....+         .-......+..    .++.+.. ...+      .-++|..+.......  ......
T Consensus       208 gEli~~~Vlf~g~d~idQ~~ki~~~lgtpd~~F~~qL~~~~r~yv~~~~~y~~~~f~~~fpD~~f~~~~e~~--~~~~~~  285 (369)
T KOG0665|consen  208 GELILGTVLFPGKDHIDQWNKIIEQLGTPDPSFMKQLQPTVRNYVENRPQYQAISFSELFPDSLFPVVLEGS--KLDCSL  285 (369)
T ss_pred             HHHhhceEEecCchHHHHHHHHHHHhcCCCHHHHHHhhHHHHHHhhcChHhhccchhhhCCcccccccccCC--ccchHH
Confidence            999999987743110         00001111111    1111111 1111      112222222222111  123356


Q ss_pred             HHHHHHHhccCCCCCCCCCCC
Q 044022          221 SAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       221 ~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      .++++.+||..||++|.+++|
T Consensus       286 ardll~~MLvi~pe~Risv~d  306 (369)
T KOG0665|consen  286 ARDLLSKMLVIDPEKRISVDD  306 (369)
T ss_pred             HHHHHHHhhccChhhcccHHH
Confidence            789999999999999999764

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.96  E-value=3.8e-31  Score=216.84  Aligned_cols=212  Identities=18%  Similarity=0.181  Sum_probs=161.9

Q ss_pred             Cccccccc-ccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc-----hHHHHHHHH
Q 044022            1 MKFYGHEY-HRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL-----PRLKIASDI   74 (241)
Q Consensus         1 iK~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-----~~~~~~~~i   74 (241)
                      ||+..+.- ....+.++.+|+.||+++.||.||.+.--|+..+..++|||-+.|.-|+-.+.....     ....++.||
T Consensus       594 vKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M~ET~ervFVVMEKl~GDMLEMILSsEkgRL~er~TkFlvtQI  673 (888)
T KOG4236|consen  594 VKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECMFETPERVFVVMEKLHGDMLEMILSSEKGRLPERITKFLVTQI  673 (888)
T ss_pred             eeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEeecCCceEEEEehhhcchHHHHHHHhhcccchHHHHHHHHHHH
Confidence            45554332 335668899999999999999999999999999999999999976555555544321     123568899


Q ss_pred             HHHhchhhcCCCCCceeccCCCCCeeecCC---CCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcch
Q 044022           75 VNSLAYLHFGFPRPIVLRNFKTQNILFNEE---NVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKS  151 (241)
Q Consensus        75 ~~~l~~lh~~~~~~ivh~dl~~~nil~~~~---~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~  151 (241)
                      +.||+|||   .++|+|+||||+|+|+...   ..+||+|||+++.++..+..   .+++||+.|+|||++....|...-
T Consensus       674 L~ALr~LH---~knIvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgEksFR---rsVVGTPAYLaPEVLrnkGyNrSL  747 (888)
T KOG4236|consen  674 LVALRYLH---FKNIVHCDLKPENVLLASASPFPQVKLCDFGFARIIGEKSFR---RSVVGTPAYLAPEVLRNKGYNRSL  747 (888)
T ss_pred             HHHHHHhh---hcceeeccCCchheeeccCCCCCceeeccccceeecchhhhh---hhhcCCccccCHHHHhhccccccc
Confidence            99999999   9999999999999999654   57999999999988765532   457899999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccC
Q 044022          152 NVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNN  231 (241)
Q Consensus       152 Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~  231 (241)
                      |+||.|+|+|.-++|..||...        +.+.+...+    .. -..+...+         .+.+....+||...|+.
T Consensus       748 DMWSVGVIiYVsLSGTFPFNEd--------EdIndQIQN----Aa-FMyPp~PW---------~eis~~AidlIn~LLqV  805 (888)
T KOG4236|consen  748 DMWSVGVIIYVSLSGTFPFNED--------EDINDQIQN----AA-FMYPPNPW---------SEISPEAIDLINNLLQV  805 (888)
T ss_pred             cceeeeEEEEEEecccccCCCc--------cchhHHhhc----cc-cccCCCch---------hhcCHHHHHHHHHHHHH
Confidence            9999999999999999999652        112221111    11 11122222         23445678899999988


Q ss_pred             CCCCCCCCC
Q 044022          232 SPEDRPTMV  240 (241)
Q Consensus       232 ~p~~Rpt~~  240 (241)
                      +=.+|-|.+
T Consensus       806 km~kRysvd  814 (888)
T KOG4236|consen  806 KMRKRYSVD  814 (888)
T ss_pred             HHHHhcchH
Confidence            888887754

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=4e-30  Score=193.48  Aligned_cols=153  Identities=19%  Similarity=0.281  Sum_probs=126.6

Q ss_pred             HHHHHHHHHhcCCCcccceeeeeeeC--------CcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHHHhchhh
Q 044022           16 CINNITYAAQMSHNHILKRIGCCLQT--------PIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVNSLAYLH   82 (241)
Q Consensus        16 ~~~e~~~l~~l~h~~iv~~~~~~~~~--------~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~~l~~lh   82 (241)
                      .++|+++|+.|+|+|++.+++.|...        ..+++||.+|++ +|...+....     ..+.+++.++..||.|+|
T Consensus        63 alreikiL~~lkHenv~nliEic~tk~Tp~~r~r~t~ylVf~~ceh-DLaGlLsn~~vr~sls~Ikk~Mk~Lm~GL~~iH  141 (376)
T KOG0669|consen   63 ALREIKILQLLKHENVVNLIEICRTKATPTNRDRATFYLVFDFCEH-DLAGLLSNRKVRFSLSEIKKVMKGLMNGLYYIH  141 (376)
T ss_pred             HHHHHHHHHHhcchhHHHHHHHHhhccCCcccccceeeeeHHHhhh-hHHHHhcCccccccHHHHHHHHHHHHHHHHHHH
Confidence            57999999999999999999888632        257999999984 7777775542     246788999999999999


Q ss_pred             cCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCC--cceeecccccCCCccCccccccc-CCCcchhhHHHHHH
Q 044022           83 FGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGE--THITTDRVIGTRGYSAPEYISIC-VLNEKSNVFSFGAF  159 (241)
Q Consensus        83 ~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~--~~~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~  159 (241)
                         ...|+|||+|+.|+|++.++.++|+|||+++.++...  .....+..+-|..|++||.+.+. .++++.|||+-|||
T Consensus       142 ---r~kilHRDmKaaNvLIt~dgilklADFGlar~fs~~~n~~kprytnrvvTLwYrppEllLG~r~yg~~iDiWgAgCi  218 (376)
T KOG0669|consen  142 ---RNKILHRDMKAANVLITKDGILKLADFGLARAFSTSKNVVKPRYTNRVVTLWYRPPELLLGDREYGPPIDIWGAGCI  218 (376)
T ss_pred             ---HhhHHhhcccHhhEEEcCCceEEeeccccccceecccccCCCCcccceeeeecCCHHHhhcccccCCcchhHhHHHH
Confidence               8999999999999999999999999999997654432  22223344558889999999875 58899999999999


Q ss_pred             HHHHHhcCccccc
Q 044022          160 LFELLAGRIHIWD  172 (241)
Q Consensus       160 ~~~~~~g~~p~~~  172 (241)
                      +.+|++|.+.+..
T Consensus       219 maeMwtrspimqg  231 (376)
T KOG0669|consen  219 MAEMWTRSPIMQG  231 (376)
T ss_pred             HHHHHccCccccC
Confidence            9999999987754

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.96  E-value=1.5e-29  Score=228.68  Aligned_cols=190  Identities=17%  Similarity=0.186  Sum_probs=131.5

Q ss_pred             HHhcCC-Ccccceeeeee-------eCCcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHHHhchhhcCCCCCc
Q 044022           23 AAQMSH-NHILKRIGCCL-------QTPIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVNSLAYLHFGFPRPI   89 (241)
Q Consensus        23 l~~l~h-~~iv~~~~~~~-------~~~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~~l~~lh~~~~~~i   89 (241)
                      .+.++| +||+.++++|.       ....++.++|++ +++|.+++....     ..++.++.||+.||.|||   +++|
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH---~~gI  101 (793)
T PLN00181         26 SKSLSHIDYVRSLLGSHKEGNLDGLDDDSIVRALECE-DVSLRQWLDNPDRSVDAFECFHVFRQIVEIVNAAH---SQGI  101 (793)
T ss_pred             cchhhHHHHHHHhhcccCCccccccccchhhhhhccC-CccHHHHHhcccccccHHHHHHHHHHHHHHHHHHH---hCCe
Confidence            345677 78999999883       334677888988 579999996532     256789999999999999   9999


Q ss_pred             eeccCCCCCeeecCCC-------------------CeEEeeccCceecCCCCc--------------ceeecccccCCCc
Q 044022           90 VLRNFKTQNILFNEEN-------------------VAKWFDFLLSISIPEGET--------------HITTDRVIGTRGY  136 (241)
Q Consensus        90 vh~dl~~~nil~~~~~-------------------~~~l~df~~~~~~~~~~~--------------~~~~~~~~~~~~~  136 (241)
                      +||||||+|||++..+                   .+|++|||.++.......              ........+|+.|
T Consensus       102 vHrDlKP~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y  181 (793)
T PLN00181        102 VVHNVRPSCFVMSSFNHVSFIESASCSDSGSDEDATTKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQILAMEMSWY  181 (793)
T ss_pred             eeccCCchhEEEcccCcEEEeeccccCcccccccCcccccccccccccccccccchhhhhccccCCCcccccccCCCcce
Confidence            9999999999996544                   455556665543211000              0001123578889


Q ss_pred             cCcccccccCCCcchhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHH
Q 044022          137 SAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQ  216 (241)
Q Consensus       137 ~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (241)
                      +|||++.+..++.++|||||||++|||++|..|+....           ........ ..    ..+...         .
T Consensus       182 ~APE~~~~~~~~~~sDVwSlGviL~ELl~~~~~~~~~~-----------~~~~~~~~-~~----~~~~~~---------~  236 (793)
T PLN00181        182 TSPEEDNGSSSNCASDVYRLGVLLFELFCPVSSREEKS-----------RTMSSLRH-RV----LPPQIL---------L  236 (793)
T ss_pred             EChhhhccCCCCchhhhhhHHHHHHHHhhCCCchhhHH-----------HHHHHHHH-hh----cChhhh---------h
Confidence            99999998899999999999999999999988864310           01111110 00    000000         1


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          217 QLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       217 ~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ......+++..||..+|.+|||+.|
T Consensus       237 ~~~~~~~~~~~~L~~~P~~Rps~~e  261 (793)
T PLN00181        237 NWPKEASFCLWLLHPEPSCRPSMSE  261 (793)
T ss_pred             cCHHHHHHHHHhCCCChhhCcChHH
Confidence            1234568899999999999999864

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=7.9e-29  Score=199.74  Aligned_cols=163  Identities=24%  Similarity=0.257  Sum_probs=136.4

Q ss_pred             ccccHHHHHHHHHHHHhcCCCcccceeeeee-eCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhc
Q 044022            9 HRHTYGSCINNITYAAQMSHNHILKRIGCCL-QTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHF   83 (241)
Q Consensus         9 ~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~   83 (241)
                      .....+...+|.+|-+.|.||.||++|++|. +.+.+|-|+|||+|.+|.-+++.+..    ....|+.||+.||.||..
T Consensus       507 KeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDtdsFCTVLEYceGNDLDFYLKQhklmSEKEARSIiMQiVnAL~YLNE  586 (775)
T KOG1151|consen  507 KENYHKHACREYRIHKELDHPRIVKLYDYFSLDTDSFCTVLEYCEGNDLDFYLKQHKLMSEKEARSIIMQIVNALKYLNE  586 (775)
T ss_pred             hhhHHHHHHHHHhhhhccCcceeeeeeeeeeeccccceeeeeecCCCchhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhc
Confidence            3455677889999999999999999999997 45678999999999999989987643    467899999999999984


Q ss_pred             CCCCCceeccCCCCCeeec---CCCCeEEeeccCceecCCCCcc-----eeecccccCCCccCccccccc----CCCcch
Q 044022           84 GFPRPIVLRNFKTQNILFN---EENVAKWFDFLLSISIPEGETH-----ITTDRVIGTRGYSAPEYISIC----VLNEKS  151 (241)
Q Consensus        84 ~~~~~ivh~dl~~~nil~~---~~~~~~l~df~~~~~~~~~~~~-----~~~~~~~~~~~~~aPE~~~~~----~~~~~~  151 (241)
                       ++-+|+|.||||.|||+.   ..|.+||+|||+++.+...+..     -..+...||..|++||.+..+    ..+.++
T Consensus       587 -ikpPIIHYDLKPgNILLv~GtacGeIKITDFGLSKIMdddSy~~vdGmeLTSQgAGTYWYLPPEcFvVgkePPKIsnKV  665 (775)
T KOG1151|consen  587 -IKPPIIHYDLKPGNILLVNGTACGEIKITDFGLSKIMDDDSYNSVDGMELTSQGAGTYWYLPPECFVVGKEPPKISNKV  665 (775)
T ss_pred             -cCCCeeeeccCCccEEEecCcccceeEeeecchhhhccCCccCcccceeeecccCceeeecCcceeecCCCCCccccce
Confidence             367899999999999995   4578999999999887654322     122345689999999988654    467899


Q ss_pred             hhHHHHHHHHHHHhcCccccc
Q 044022          152 NVFSFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       152 Di~s~G~~~~~~~~g~~p~~~  172 (241)
                      ||||+|+|+|..+.|+.||..
T Consensus       666 DVWSvGVIFyQClYGrKPFGh  686 (775)
T KOG1151|consen  666 DVWSVGVIFYQCLYGRKPFGH  686 (775)
T ss_pred             eeEeeehhhhhhhccCCCCCC
Confidence            999999999999999999965

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.95  E-value=2.5e-29  Score=183.94  Aligned_cols=165  Identities=20%  Similarity=0.209  Sum_probs=132.9

Q ss_pred             cccccccccccHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhc----CC-C---chHHHHHH
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIF----GA-P---LPRLKIAS   72 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~----~~-~---~~~~~~~~   72 (241)
                      |......+.+...+.++|+.+..+- ..|.+|+++|....++..|+-||.|. .||.-+-+    .. .   ...-+++.
T Consensus        77 Kri~~tvn~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~regdvwIcME~M~-tSldkfy~~v~~~g~~ipE~vlGkIa~  155 (282)
T KOG0984|consen   77 KRIRATVNSQEQKRLLMDLDIIMRTVDCPFTVHFYGALFREGDVWICMELMD-TSLDKFYRKVLKKGGTIPEDVLGKIAV  155 (282)
T ss_pred             eeehhhcChHHHHHHHHhhhhhccCCCCCeEEEeehhhhccccEEEeHHHhh-hhHHHHHHHHHhcCCcCchHHhhHhHH
Confidence            3333344455667788888887776 67999999999999999999999996 68866532    22 1   12447899


Q ss_pred             HHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc----cCCC
Q 044022           73 DIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI----CVLN  148 (241)
Q Consensus        73 ~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~----~~~~  148 (241)
                      .+..||.|||+  +..++|||+||+|||++.+|++|++|||.+..+.++-..   +.-.|...|+|||.+..    ..|+
T Consensus       156 Svv~al~~L~~--kL~vIHRDvKPsNiLIn~~GqVKiCDFGIsG~L~dSiAk---t~daGCkpYmaPEri~~e~n~~gY~  230 (282)
T KOG0984|consen  156 SVVHALEFLHS--KLSVIHRDVKPSNILINYDGQVKICDFGISGYLVDSIAK---TMDAGCKPYMAPERINPELNQKGYS  230 (282)
T ss_pred             HHHHHHHHHHH--HhhhhhccCCcceEEEccCCcEEEcccccceeehhhhHH---HHhcCCCccCChhhcCcccCcccce
Confidence            99999999997  778999999999999999999999999999877654322   22357889999998854    3788


Q ss_pred             cchhhHHHHHHHHHHHhcCccccc
Q 044022          149 EKSNVFSFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       149 ~~~Di~s~G~~~~~~~~g~~p~~~  172 (241)
                      .+|||||||+.+.||.+++.||..
T Consensus       231 vksDvWSLGItmiElA~lr~PY~~  254 (282)
T KOG0984|consen  231 VKSDVWSLGITMIEMAILRFPYES  254 (282)
T ss_pred             eehhhhhhhhhhhhhhhccccccc
Confidence            999999999999999999999854

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.95  E-value=4.3e-28  Score=174.23  Aligned_cols=154  Identities=19%  Similarity=0.232  Sum_probs=130.1

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc-----hHHHHHHHHHHHhchhhcCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL-----PRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-----~~~~~~~~i~~~l~~lh~~~   85 (241)
                      -.-.+.++|+.+++.|+|.|||+++++.-.++.+.+|+|||. -.|..+......     ....++.|++.|+.|+|   
T Consensus        43 gvpssalreicllkelkhknivrl~dvlhsdkkltlvfe~cd-qdlkkyfdslng~~d~~~~rsfmlqllrgl~fch---  118 (292)
T KOG0662|consen   43 GVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCD-QDLKKYFDSLNGDLDPEIVRSFMLQLLRGLGFCH---  118 (292)
T ss_pred             CCcHHHHHHHHHHHHhhhcceeehhhhhccCceeEEeHHHhh-HHHHHHHHhcCCcCCHHHHHHHHHHHHhhhhhhh---
Confidence            345678999999999999999999999988999999999996 588777654321     35678999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccC-CCcchhhHHHHHHHHHHH
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICV-LNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~-~~~~~Di~s~G~~~~~~~  164 (241)
                      ++.+.|||+||+|++++.+|..|++|||+++..+.+..+-..  .+-|..|++|.++.+.. |+...|+||-|||+.|+.
T Consensus       119 shnvlhrdlkpqnllin~ngelkladfglarafgipvrcysa--evvtlwyrppdvlfgakly~tsidmwsagcifaela  196 (292)
T KOG0662|consen  119 SHNVLHRDLKPQNLLINRNGELKLADFGLARAFGIPVRCYSA--EVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELA  196 (292)
T ss_pred             hhhhhhccCCcceEEeccCCcEEecccchhhhcCCceEeeec--eeeeeeccCcceeeeeehhccchHhhhcchHHHHHh
Confidence            999999999999999999999999999999887766544332  34577899999998864 788999999999999999


Q ss_pred             h-cCccc
Q 044022          165 A-GRIHI  170 (241)
Q Consensus       165 ~-g~~p~  170 (241)
                      . |++-|
T Consensus       197 nagrplf  203 (292)
T KOG0662|consen  197 NAGRPLF  203 (292)
T ss_pred             hcCCCCC
Confidence            7 44444

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=2.5e-28  Score=203.95  Aligned_cols=159  Identities=18%  Similarity=0.277  Sum_probs=135.2

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      +.......|-.||..-.++.||+++-.|.+.+.+|+||+|++||++-.+|-..+.    ....++.++..|+.+.|   +
T Consensus       671 nQvaHVKAERDILAEADn~WVVrLyySFQDkdnLYFVMdYIPGGDmMSLLIrmgIFeE~LARFYIAEltcAiesVH---k  747 (1034)
T KOG0608|consen  671 NQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMDYIPGGDMMSLLIRMGIFEEDLARFYIAELTCAIESVH---K  747 (1034)
T ss_pred             hhhhhhhhhhhhHhhcCCcceEEEEEEeccCCceEEEEeccCCccHHHHHHHhccCHHHHHHHHHHHHHHHHHHHH---h
Confidence            4455667788888888999999999999999999999999999999998765433    34567889999999999   9


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecC---------CC-------------------------------Cccee
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIP---------EG-------------------------------ETHIT  126 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~---------~~-------------------------------~~~~~  126 (241)
                      .|++||||||+|||||.+|++||+|||+|.-+.         .+                               ...+.
T Consensus       748 mGFIHRDiKPDNILIDrdGHIKLTDFGLCTGfRWTHdskYYq~gdH~RqDSmep~~e~~d~~~~lkvL~~ra~~~h~r~~  827 (1034)
T KOG0608|consen  748 MGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQEGDHHRQDSMEPSPEWADISKCLKVLERRAMRQHQRIL  827 (1034)
T ss_pred             ccceecccCccceEEccCCceeeeeccccccceeccccccccCCCccccccCCCchhhccccccchHHHHHHHhhhhhhh
Confidence            999999999999999999999999999985432         00                               00111


Q ss_pred             ecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcCccccc
Q 044022          127 TDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       127 ~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~~p~~~  172 (241)
                      ....+||+-|+|||++....++..+|.||.|+|+|||+.|++||..
T Consensus       828 ahslvgt~nyiapevl~r~g~~q~cdwws~gvil~em~~g~~pf~~  873 (1034)
T KOG0608|consen  828 AHSLVGTPNYIAPEVLARTGYTQLCDWWSVGVILYEMLVGQPPFLA  873 (1034)
T ss_pred             hhhhcCCCcccChHHhcccCccccchhhHhhHHHHHHhhCCCCccC
Confidence            2346799999999999999999999999999999999999999965

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=2.5e-27  Score=185.24  Aligned_cols=218  Identities=21%  Similarity=0.252  Sum_probs=162.0

Q ss_pred             Cccccccccc--ccHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC---C-chHHHHHHH
Q 044022            1 MKFYGHEYHR--HTYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA---P-LPRLKIASD   73 (241)
Q Consensus         1 iK~~~~~~~~--~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~---~-~~~~~~~~~   73 (241)
                      ||+..++...  +..+..+.|-.+..+- +||.+|-++.+|+.+..++.|.||.+||+|--.++..   + .....+..+
T Consensus       280 mkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscfqtesrlffvieyv~ggdlmfhmqrqrklpeeharfys~e  359 (593)
T KOG0695|consen  280 MKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAE  359 (593)
T ss_pred             hhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhcccceEEEEEEEecCcceeeehhhhhcCcHHHhhhhhHH
Confidence            3444444422  3455566777777776 7899999999999999999999999999986544432   1 135567889


Q ss_pred             HHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhh
Q 044022           74 IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNV  153 (241)
Q Consensus        74 i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di  153 (241)
                      |..||.|||   ++||+.||||..|+|++..|.+|++|+|.++.--.+..  ..++.+||+-|.|||.+.+..|...+|.
T Consensus       360 i~lal~flh---~rgiiyrdlkldnvlldaeghikltdygmcke~l~~gd--~tstfcgtpnyiapeilrgeeygfsvdw  434 (593)
T KOG0695|consen  360 ICLALNFLH---ERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGLGPGD--TTSTFCGTPNYIAPEILRGEEYGFSVDW  434 (593)
T ss_pred             HHHHHHHHh---hcCeeeeeccccceEEccCCceeecccchhhcCCCCCc--ccccccCCCcccchhhhcccccCceehH
Confidence            999999999   99999999999999999999999999999976543322  2356789999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCC
Q 044022          154 FSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSP  233 (241)
Q Consensus       154 ~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p  233 (241)
                      |++|++++||+.|+.||+....  .+....-.+++....-+.++ .++.             ..+.....+++..|.+||
T Consensus       435 walgvlmfemmagrspfdivgm--~n~d~ntedylfqvilekqi-ripr-------------slsvkas~vlkgflnkdp  498 (593)
T KOG0695|consen  435 WALGVLMFEMMAGRSPFDIVGM--DNPDMNTEDYLFQVILEKQI-RIPR-------------SLSVKASHVLKGFLNKDP  498 (593)
T ss_pred             HHHHHHHHHHHcCCCCcceecC--CCcccchhHHHHHHHhhhcc-cccc-------------eeehhhHHHHHHhhcCCc
Confidence            9999999999999999976332  22222333333333322221 1111             111234568888899999


Q ss_pred             CCCCCC
Q 044022          234 EDRPTM  239 (241)
Q Consensus       234 ~~Rpt~  239 (241)
                      ++|...
T Consensus       499 ~erlgc  504 (593)
T KOG0695|consen  499 KERLGC  504 (593)
T ss_pred             HHhcCC
Confidence            998653

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.95  E-value=8.5e-28  Score=208.61  Aligned_cols=128  Identities=23%  Similarity=0.283  Sum_probs=99.5

Q ss_pred             eCCcceEEEEecCCCCHHHhhcCCCc------------------------hHHHHHHHHHHHhchhhcCCCCCceeccCC
Q 044022           40 QTPIPILVFQSVEYGTLRDCIFGAPL------------------------PRLKIASDIVNSLAYLHFGFPRPIVLRNFK   95 (241)
Q Consensus        40 ~~~~~~lv~e~~~~~sL~~~l~~~~~------------------------~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~   95 (241)
                      .....++|+||+.+++|.+++.....                        ....++.|++.||.|||   +++|+|||||
T Consensus       206 ~~~~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH---~~gIiHRDLK  282 (566)
T PLN03225        206 KEDEYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLH---STGIVHRDVK  282 (566)
T ss_pred             cCCceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHH---HCCEEeCcCC
Confidence            45678999999999999998865321                        12368899999999999   8999999999


Q ss_pred             CCCeeecC-CCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccC----------------------CCcchh
Q 044022           96 TQNILFNE-ENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICV----------------------LNEKSN  152 (241)
Q Consensus        96 ~~nil~~~-~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~----------------------~~~~~D  152 (241)
                      |+|||++. ++.+||+|||++.......... .....+++.|+|||.+....                      +..++|
T Consensus       283 P~NILl~~~~~~~KL~DFGlA~~l~~~~~~~-~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp~l~~~~~~~k~D  361 (566)
T PLN03225        283 PQNIIFSEGSGSFKIIDLGAAADLRVGINYI-PKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFD  361 (566)
T ss_pred             HHHEEEeCCCCcEEEEeCCCccccccccccC-CcccccCCCccChHHhhccCCCCCCccccccccccchhccccCCCCcc
Confidence            99999986 5799999999997654332221 13456789999999664321                      234569


Q ss_pred             hHHHHHHHHHHHhcCcccc
Q 044022          153 VFSFGAFLFELLAGRIHIW  171 (241)
Q Consensus       153 i~s~G~~~~~~~~g~~p~~  171 (241)
                      ||||||++|+|+++..|+.
T Consensus       362 VwSlGviL~el~~~~~~~~  380 (566)
T PLN03225        362 IYSAGLIFLQMAFPNLRSD  380 (566)
T ss_pred             cHHHHHHHHHHHhCcCCCc
Confidence            9999999999999776643

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.95  E-value=9.1e-27  Score=177.83  Aligned_cols=170  Identities=29%  Similarity=0.450  Sum_probs=146.6

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC--Cc---hHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA--PL---PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~--~~---~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ..+.+.+|++.++.++|++++++++++......++++|++.+++|.+++...  ..   .+..++.+++.++.+||   +
T Consensus        34 ~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh---~  110 (215)
T cd00180          34 LLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGSLKDLLKENEGKLSEDEILRILLQILEGLEYLH---S  110 (215)
T ss_pred             HHHHHHHHHHHHHhcCCCCeeeEeeeeecCCeEEEEEecCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---h
Confidence            3578999999999999999999999999988999999999989999998754  22   46788999999999999   8


Q ss_pred             CCceeccCCCCCeeecC-CCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc-CCCcchhhHHHHHHHHHHH
Q 044022           87 RPIVLRNFKTQNILFNE-ENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-VLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~-~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~~~~~~  164 (241)
                      .+++|+||+|.||+++. .+.++|+||+.+........  ......+...|++||..... ..+.++|+|++|++++++ 
T Consensus       111 ~~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~~~--~~~~~~~~~~~~~pe~~~~~~~~~~~~D~~~lg~~~~~l-  187 (215)
T cd00180         111 NGIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKS--LLKTIVGTPAYMAPEVLLGKGYYSEKSDIWSLGVILYEL-  187 (215)
T ss_pred             CCeeccCCCHhhEEEeCCCCcEEEecCCceEEccCCcc--hhhcccCCCCccChhHhcccCCCCchhhhHHHHHHHHHH-
Confidence            89999999999999999 89999999999876654321  11223567789999999876 778999999999999998 


Q ss_pred             hcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          165 AGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       165 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                                                                            ..+.+++..|++.+|++|||+++
T Consensus       188 ------------------------------------------------------~~~~~~l~~~l~~~p~~R~~~~~  210 (215)
T cd00180         188 ------------------------------------------------------PELKDLIRKMLQKDPEKRPSAKE  210 (215)
T ss_pred             ------------------------------------------------------HHHHHHHHHHhhCCcccCcCHHH
Confidence                                                                  25778999999999999999753

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=2.4e-27  Score=176.25  Aligned_cols=155  Identities=15%  Similarity=0.258  Sum_probs=128.8

Q ss_pred             cHHHHHHHHHHHHhcC-CCcccceeeeeee--CCcceEEEEecCCCCHHHhhcCCCc-hHHHHHHHHHHHhchhhcCCCC
Q 044022           12 TYGSCINNITYAAQMS-HNHILKRIGCCLQ--TPIPILVFQSVEYGTLRDCIFGAPL-PRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~-h~~iv~~~~~~~~--~~~~~lv~e~~~~~sL~~~l~~~~~-~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ..+...+|+.||+.|+ ||||++++++..+  +..+.+|+||..+.+....-..... .+..++.+++.||.|+|   ++
T Consensus        75 kkkKIkREikIL~nL~gg~NIi~L~DiV~Dp~SktpaLiFE~v~n~Dfk~ly~tl~d~dIryY~~elLkALdyCH---S~  151 (338)
T KOG0668|consen   75 KKKKIKREIKILQNLRGGPNIIKLLDIVKDPESKTPSLIFEYVNNTDFKQLYPTLTDYDIRYYIYELLKALDYCH---SM  151 (338)
T ss_pred             HHHHHHHHHHHHHhccCCCCeeehhhhhcCccccCchhHhhhhccccHHHHhhhhchhhHHHHHHHHHHHHhHHH---hc
Confidence            3566889999999997 9999999999875  4578899999998887776554433 46678999999999999   99


Q ss_pred             CceeccCCCCCeeecCC-CCeEEeeccCceecCCCCcceeecccccCCCccCccccccc-CCCcchhhHHHHHHHHHHHh
Q 044022           88 PIVLRNFKTQNILFNEE-NVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-VLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~-~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~~~~~~~  165 (241)
                      ||.|||+||.|++++.. ..++++|+|++-..-.+...   +-.+.+..|-.||.+... .++.+-|+|||||++..|+.
T Consensus       152 GImHRDVKPhNvmIdh~~rkLrlIDWGLAEFYHp~~eY---nVRVASRyfKGPELLVdy~~YDYSLD~WS~GcmlA~miF  228 (338)
T KOG0668|consen  152 GIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEY---NVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIF  228 (338)
T ss_pred             CcccccCCcceeeechhhceeeeeecchHhhcCCCcee---eeeeehhhcCCchheeechhccccHHHHHHHHHHHHHHh
Confidence            99999999999999976 46899999999765444332   234567788899998765 57889999999999999999


Q ss_pred             cCccccc
Q 044022          166 GRIHIWD  172 (241)
Q Consensus       166 g~~p~~~  172 (241)
                      .+-||..
T Consensus       229 rkepFFh  235 (338)
T KOG0668|consen  229 RKEPFFH  235 (338)
T ss_pred             ccCcccC
Confidence            9999965

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=99.94  E-value=4.6e-28  Score=198.28  Aligned_cols=151  Identities=23%  Similarity=0.269  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHHhcCC------CcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc-------hHHHHHHHHHHHhch
Q 044022           14 GSCINNITYAAQMSH------NHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL-------PRLKIASDIVNSLAY   80 (241)
Q Consensus        14 ~~~~~e~~~l~~l~h------~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-------~~~~~~~~i~~~l~~   80 (241)
                      +.=++|+++|++|..      -|+++++..|...+++|||||-+. .+|...|++.+.       ....++.|+..||..
T Consensus       473 KtGl~EleiLkKL~~AD~Edk~Hclrl~r~F~hknHLClVFE~Ls-lNLRevLKKyG~nvGL~ikaVRsYaqQLflALkl  551 (752)
T KOG0670|consen  473 KTGLKELEILKKLNDADPEDKFHCLRLFRHFKHKNHLCLVFEPLS-LNLREVLKKYGRNVGLHIKAVRSYAQQLFLALKL  551 (752)
T ss_pred             hhhhHHHHHHHHhhccCchhhhHHHHHHHHhhhcceeEEEehhhh-chHHHHHHHhCcccceeehHHHHHHHHHHHHHHH
Confidence            344689999999942      389999999999999999999985 899999987643       245789999999999


Q ss_pred             hhcCCCCCceeccCCCCCeeecCC-CCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHH
Q 044022           81 LHFGFPRPIVLRNFKTQNILFNEE-NVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAF  159 (241)
Q Consensus        81 lh~~~~~~ivh~dl~~~nil~~~~-~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~  159 (241)
                      |.   ..+++|+||||.|||++.. ..+||||||.+........    +-..-+.+|.|||.+.+.+|+...|+||.||.
T Consensus       552 LK---~c~vlHaDIKPDNiLVNE~k~iLKLCDfGSA~~~~enei----tPYLVSRFYRaPEIiLG~~yd~~iD~WSvgct  624 (752)
T KOG0670|consen  552 LK---KCGVLHADIKPDNILVNESKNILKLCDFGSASFASENEI----TPYLVSRFYRAPEIILGLPYDYPIDTWSVGCT  624 (752)
T ss_pred             HH---hcCeeecccCccceEeccCcceeeeccCccccccccccc----cHHHHHHhccCcceeecCcccCCccceeecee
Confidence            99   9999999999999999876 5679999999865443221    12234568999999999999999999999999


Q ss_pred             HHHHHhcCccccc
Q 044022          160 LFELLAGRIHIWD  172 (241)
Q Consensus       160 ~~~~~~g~~p~~~  172 (241)
                      +||+.||+..|..
T Consensus       625 LYElYtGkIlFpG  637 (752)
T KOG0670|consen  625 LYELYTGKILFPG  637 (752)
T ss_pred             eEEeeccceecCC
Confidence            9999999988854

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.94  E-value=8e-27  Score=189.58  Aligned_cols=92  Identities=18%  Similarity=0.277  Sum_probs=76.5

Q ss_pred             ccccccHHHHHHHHHHHHhcC-----C---CcccceeeeeeeC----CcceEEEEecCCCCHHHhhcCCC-----c-hHH
Q 044022            7 EYHRHTYGSCINNITYAAQMS-----H---NHILKRIGCCLQT----PIPILVFQSVEYGTLRDCIFGAP-----L-PRL   68 (241)
Q Consensus         7 ~~~~~~~~~~~~e~~~l~~l~-----h---~~iv~~~~~~~~~----~~~~lv~e~~~~~sL~~~l~~~~-----~-~~~   68 (241)
                      ++.++..+..+.||++|++++     |   .+||++++.|...    .+.|||+|++ |.+|..++....     . ...
T Consensus       112 KSAqhYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~FkhsGpNG~HVCMVfEvL-GdnLLklI~~s~YrGlpl~~VK  190 (590)
T KOG1290|consen  112 KSAQHYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHSGPNGQHVCMVFEVL-GDNLLKLIKYSNYRGLPLSCVK  190 (590)
T ss_pred             ehhhHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceecCCCCcEEEEEehhh-hhHHHHHHHHhCCCCCcHHHHH
Confidence            345566777889999999993     3   3799999999854    4899999999 789998886542     1 356


Q ss_pred             HHHHHHHHHhchhhcCCCCCceeccCCCCCeee
Q 044022           69 KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILF  101 (241)
Q Consensus        69 ~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~  101 (241)
                      .|+.|++.||.|||.  +.+|+|.||||+|||+
T Consensus       191 ~I~~qvL~GLdYLH~--ecgIIHTDlKPENvLl  221 (590)
T KOG1290|consen  191 EICRQVLTGLDYLHR--ECGIIHTDLKPENVLL  221 (590)
T ss_pred             HHHHHHHHHHHHHHH--hcCccccCCCcceeee
Confidence            799999999999998  7799999999999998

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.94  E-value=1.3e-26  Score=173.48  Aligned_cols=154  Identities=19%  Similarity=0.170  Sum_probs=110.5

Q ss_pred             CCHHHhhcCCC--c---hHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeec
Q 044022           54 GTLRDCIFGAP--L---PRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTD  128 (241)
Q Consensus        54 ~sL~~~l~~~~--~---~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~  128 (241)
                      |||.+++....  .   .+..++.|++.||.|||   +.+      ||+||+++.++.+++  ||.+.......      
T Consensus         1 GsL~~~l~~~~~~l~~~~~~~i~~qi~~~L~~lH---~~~------kp~Nil~~~~~~~~~--fG~~~~~~~~~------   63 (176)
T smart00750        1 VSLADILEVRGRPLNEEEIWAVCLQCLRALRELH---RQA------KSGNILLTWDGLLKL--DGSVAFKTPEQ------   63 (176)
T ss_pred             CcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH---hcC------CcccEeEcCccceee--ccceEeecccc------
Confidence            68888886421  2   57889999999999999   665      999999999999999  99887654322      


Q ss_pred             ccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccC
Q 044022          129 RVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQD  208 (241)
Q Consensus       129 ~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (241)
                       ..|++.|+|||++.+..++.++||||||+++|+|++|+.||.....        ............. .......    
T Consensus        64 -~~g~~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~p~~~~~~--------~~~~~~~~~~~~~-~~~~~~~----  129 (176)
T smart00750       64 -SRVDPYFMAPEVIQGQSYTEKADIYSLGITLYEALDYELPYNEERE--------LSAILEILLNGMP-ADDPRDR----  129 (176)
T ss_pred             -CCCcccccChHHhcCCCCcchhhHHHHHHHHHHHHhCCCCccccch--------hcHHHHHHHHHhc-cCCcccc----
Confidence             2578999999999999999999999999999999999999854211        1111111111110 0000000    


Q ss_pred             CCchhHHHHHH--HHHHHHHHhccCCCCCCCCCCC
Q 044022          209 IPCIEKEQQLH--ASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       209 ~~~~~~~~~~~--~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                       +.  ......  .+.+++.+||..||.+|||+.|
T Consensus       130 -~~--~~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~  161 (176)
T smart00750      130 -SN--LESVSAARSFADFMRVCASRLPQRREAANH  161 (176)
T ss_pred             -cc--HHHHHhhhhHHHHHHHHHhcccccccCHHH
Confidence             00  112222  6899999999999999999853

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.94  E-value=2.2e-27  Score=199.01  Aligned_cols=205  Identities=21%  Similarity=0.286  Sum_probs=159.3

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ...-.++|+-+++..+|+|||.++|.+......|+.||||-+|+|.+.-+...    .+...+.++.+.|+.|||   +.
T Consensus        55 d~~~iqqei~~~~dc~h~nivay~gsylr~dklwicMEycgggslQdiy~~TgplselqiayvcRetl~gl~ylh---s~  131 (829)
T KOG0576|consen   55 DFSGIQQEIGMLRDCRHPNIVAYFGSYLRRDKLWICMEYCGGGSLQDIYHVTGPLSELQIAYVCRETLQGLKYLH---SQ  131 (829)
T ss_pred             cccccccceeeeecCCCcChHHHHhhhhhhcCcEEEEEecCCCcccceeeecccchhHHHHHHHhhhhccchhhh---cC
Confidence            45566789999999999999999999999999999999999999998766543    366778889999999999   99


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccc---ccCCCcchhhHHHHHHHHHHH
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYIS---ICVLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~---~~~~~~~~Di~s~G~~~~~~~  164 (241)
                      +-+|||||-.||+++..+-+|++|||.+...+.  +........||++|+|||+..   .+.|...+|||++|+..-|+-
T Consensus       132 gk~hRdiKGanilltd~gDvklaDfgvsaqita--ti~KrksfiGtpywmapEvaaverkggynqlcdiwa~gitAiel~  209 (829)
T KOG0576|consen  132 GKIHRDIKGANILLTDEGDVKLADFGVSAQITA--TIAKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWALGITAIELG  209 (829)
T ss_pred             CcccccccccceeecccCceeecccCchhhhhh--hhhhhhcccCCccccchhHHHHHhcccccccccccccccchhhhh
Confidence            999999999999999999999999999876543  233345678999999999874   356889999999999999998


Q ss_pred             hcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          165 AGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       165 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                      ..++|..+.          +.-....+....-+.    +.-..+--     .-.+.+.+|++.||.++|++|||++
T Consensus       210 eLqpplfdl----------hpmr~l~LmTkS~~q----pp~lkDk~-----kws~~fh~fvK~altknpKkRptae  266 (829)
T KOG0576|consen  210 ELQPPLFDL----------HPMRALFLMTKSGFQ----PPTLKDKT-----KWSEFFHNFVKGALTKNPKKRPTAE  266 (829)
T ss_pred             hcCCccccc----------chHHHHHHhhccCCC----CCcccCCc-----cchHHHHHHHHHHhcCCCccCCChh
Confidence            888886541          111111111111111    11111111     2235789999999999999999986

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.94  E-value=4e-27  Score=194.80  Aligned_cols=150  Identities=23%  Similarity=0.300  Sum_probs=131.5

Q ss_pred             HHHHHHHHHhcC---CCcccceeeeeeeCCcceEEEEec-CCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCCC
Q 044022           16 CINNITYAAQMS---HNHILKRIGCCLQTPIPILVFQSV-EYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        16 ~~~e~~~l~~l~---h~~iv~~~~~~~~~~~~~lv~e~~-~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      .--||+||..|+   |+||++++++|++.+.+|++||-. ++.+|++++.-.+.    ....+.+|++.|+++||   +.
T Consensus       613 Vp~EIqIla~l~~~sH~NIlKlLdfFEddd~yyl~te~hg~gIDLFd~IE~kp~m~E~eAk~IFkQV~agi~hlh---~~  689 (772)
T KOG1152|consen  613 VPSEIQILATLNKHSHENILKLLDFFEDDDYYYLETEVHGEGIDLFDFIEFKPRMDEPEAKLIFKQVVAGIKHLH---DQ  689 (772)
T ss_pred             cchhHHHHHHhhhcCccchhhhhheeecCCeeEEEecCCCCCcchhhhhhccCccchHHHHHHHHHHHhcccccc---cc
Confidence            345999999997   999999999999999999999986 56799999976643    45678999999999999   99


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCC-CcchhhHHHHHHHHHHHhc
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVL-NEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~-~~~~Di~s~G~~~~~~~~g  166 (241)
                      +|||||||-+|+.++.+|-+||+|||.+....++..    ...+||..|.|||++.+.+| +...|||++|+++|.++..
T Consensus       690 ~ivhrdikdenvivd~~g~~klidfgsaa~~ksgpf----d~f~gtv~~aapevl~g~~y~gk~qdiwalgillytivyk  765 (772)
T KOG1152|consen  690 GIVHRDIKDENVIVDSNGFVKLIDFGSAAYTKSGPF----DVFVGTVDYAAPEVLGGEKYLGKPQDIWALGILLYTIVYK  765 (772)
T ss_pred             CceecccccccEEEecCCeEEEeeccchhhhcCCCc----ceeeeeccccchhhhCCCccCCCcchhhhhhheeeEEEec
Confidence            999999999999999999999999999876655543    44679999999999998876 4678999999999999999


Q ss_pred             Cccccc
Q 044022          167 RIHIWD  172 (241)
Q Consensus       167 ~~p~~~  172 (241)
                      .-||+.
T Consensus       766 enpyyn  771 (772)
T KOG1152|consen  766 ENPYYN  771 (772)
T ss_pred             cCCCcC
Confidence            999864

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.94  E-value=4.1e-26  Score=194.13  Aligned_cols=208  Identities=16%  Similarity=0.198  Sum_probs=137.7

Q ss_pred             HHHHHHHHHhcCCCcc-----cceeeeeee--------CCcceEEEEecCCCCHHHhhcCCC------------------
Q 044022           16 CINNITYAAQMSHNHI-----LKRIGCCLQ--------TPIPILVFQSVEYGTLRDCIFGAP------------------   64 (241)
Q Consensus        16 ~~~e~~~l~~l~h~~i-----v~~~~~~~~--------~~~~~lv~e~~~~~sL~~~l~~~~------------------   64 (241)
                      +..|+.++.+++|.++     ++++++|..        .+..++|+||+++++|.+++....                  
T Consensus       219 ~~vE~~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~  298 (507)
T PLN03224        219 GMVEAYMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIP  298 (507)
T ss_pred             hHHHHHHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchh
Confidence            4457777888877654     677777753        346799999999999999886421                  


Q ss_pred             ----------chHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCC
Q 044022           65 ----------LPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTR  134 (241)
Q Consensus        65 ----------~~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~  134 (241)
                                .....++.+++.+|.|||   +.+++||||||+||+++.++.++|+|||++......... ......+++
T Consensus       299 ~~~~~~~~~~~~~~~i~~ql~~aL~~lH---~~~ivHrDLKp~NILl~~~~~~kL~DFGla~~~~~~~~~-~~~~g~~tp  374 (507)
T PLN03224        299 DNMPQDKRDINVIKGVMRQVLTGLRKLH---RIGIVHRDIKPENLLVTVDGQVKIIDFGAAVDMCTGINF-NPLYGMLDP  374 (507)
T ss_pred             hhcccccCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCchHhEEECCCCcEEEEeCcCccccccCCcc-CccccCCCc
Confidence                      013467889999999999   899999999999999999999999999998654332211 111223478


Q ss_pred             CccCcccccccCC----------------------CcchhhHHHHHHHHHHHhcCc-ccccccccCCCc---ccchHHHH
Q 044022          135 GYSAPEYISICVL----------------------NEKSNVFSFGAFLFELLAGRI-HIWDLLKDTHDH---GCFFNEYL  188 (241)
Q Consensus       135 ~~~aPE~~~~~~~----------------------~~~~Di~s~G~~~~~~~~g~~-p~~~~~~~~~~~---~~~~~~~~  188 (241)
                      .|+|||.+.....                      ..+.|+||+||++++|++|.. |+..........   ......+.
T Consensus       375 ~Y~aPE~l~~~~~~~~~~~~~~~~~l~~~~~~yg~~~~~DvwSlGvil~em~~~~l~p~~~~~~f~~~~~~~~~~~~~~r  454 (507)
T PLN03224        375 RYSPPEELVMPQSCPRAPAPAMAALLSPFAWLYGRPDLFDSYTAGVLLMQMCVPELRPVANIRLFNTELRQYDNDLNRWR  454 (507)
T ss_pred             ceeChhhhcCCCCCCccchhhhhhhhhhhHHhcCCCCccchhhHHHHHHHHHhCCCCCccchhhhhhHHhhccchHHHHH
Confidence            8999998753221                      124699999999999999875 664321110000   00000000


Q ss_pred             HHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCC---CCCCCCCC
Q 044022          189 KNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSP---EDRPTMVD  241 (241)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p---~~Rpt~~e  241 (241)
                        ......          .+++.  ....+....+++.++|..+|   .+|+|++|
T Consensus       455 --~~~~~~----------~~~~~--~d~~s~~~~dLi~~LL~~~~~~~~~RlSa~e  496 (507)
T PLN03224        455 --MYKGQK----------YDFSL--LDRNKEAGWDLACKLITKRDQANRGRLSVGQ  496 (507)
T ss_pred             --hhcccC----------CCccc--ccccChHHHHHHHHHhccCCCCcccCCCHHH
Confidence              000010          01110  11233678899999999876   68999864

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.93  E-value=2.5e-25  Score=172.19  Aligned_cols=157  Identities=28%  Similarity=0.327  Sum_probs=134.4

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC--c---hHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP--L---PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~--~---~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ..+.+.+|++.++.++|+|++++++++......++++|++.+++|.+++....  .   ....++.+++.++.+||   +
T Consensus        40 ~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh---~  116 (225)
T smart00221       40 QREEFLREIRILKKLKHPNIVKLYGVFEDPEPLYLVMEYCEGGDLFDYLRKKGGKLSEEEARFYLRQILEALEYLH---S  116 (225)
T ss_pred             HHHHHHHHHHHHHhCCCCChhhheeeeecCCceEEEEeccCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---h
Confidence            56788899999999999999999999998889999999999889999986543  2   36778999999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccc-cccCCCcchhhHHHHHHHHHHHh
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYI-SICVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~-~~~~~~~~~Di~s~G~~~~~~~~  165 (241)
                      .+++|+|++|.|++++..+.++|+|||.+......... ......++..|++||.. ....++.++|+|+||++++++++
T Consensus       117 ~~i~h~di~~~ni~v~~~~~~~l~d~g~~~~~~~~~~~-~~~~~~~~~~~~~pe~~~~~~~~~~~~Dv~~lG~~~~~l~~  195 (225)
T smart00221      117 LGIVHRDLKPENILLGMDGLVKLADFGLARFIHRDLAA-LLKTVKGTPFYLAPEVLLGGKGYGEAVDIWSLGVILYELLW  195 (225)
T ss_pred             CCeecCCCCHHHEEEcCCCCEEEeeCceeeEecCcccc-cccceeccCCcCCHhHhcCCCCCCchhhHHHHHHHHHHHHH
Confidence            89999999999999999999999999998766543200 11233567789999998 66677889999999999999999


Q ss_pred             cCccccc
Q 044022          166 GRIHIWD  172 (241)
Q Consensus       166 g~~p~~~  172 (241)
                      |+.||..
T Consensus       196 g~~pf~~  202 (225)
T smart00221      196 GPEPFSG  202 (225)
T ss_pred             CCCCccc
Confidence            9999944

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.93  E-value=1.1e-27  Score=182.39  Aligned_cols=156  Identities=20%  Similarity=0.271  Sum_probs=125.9

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCC-----cceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhh
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTP-----IPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLH   82 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~-----~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh   82 (241)
                      ..+++.+|+++|..++|.|++..+++..-..     ..|+++|++. .+|...+-+..    .....++.||++||+|||
T Consensus        95 s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqEiYV~TELmQ-SDLHKIIVSPQ~Ls~DHvKVFlYQILRGLKYLH  173 (449)
T KOG0664|consen   95 SCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQELYVLTELMQ-SDLHKIIVSPQALTPDHVKVFVYQILRGLKYLH  173 (449)
T ss_pred             HHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHHHHHHHHHHH-hhhhheeccCCCCCcchhhhhHHHHHhhhHHHh
Confidence            4677899999999999999999988875433     4578889885 57777765432    134456789999999999


Q ss_pred             cCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc-CCCcchhhHHHHHHHH
Q 044022           83 FGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-VLNEKSNVFSFGAFLF  161 (241)
Q Consensus        83 ~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~~~  161 (241)
                         +.+|.||||||.|+|++.+..+||+|||+++.......... +..+-|-+|+|||.+.+. .|+.+.||||.|||+.
T Consensus       174 ---sA~ILHRDIKPGNLLVNSNCvLKICDFGLARvee~d~~~hM-TqEVVTQYYRAPEiLMGaRhYs~AvDiWSVGCIFa  249 (449)
T KOG0664|consen  174 ---TANILHRDIKPGNLLVNSNCILKICDFGLARTWDQRDRLNM-THEVVTQYYRAPELLMGARRYTGAVDIWSVGCIFA  249 (449)
T ss_pred             ---hcchhhccCCCccEEeccCceEEecccccccccchhhhhhh-HHHHHHHHhccHHHhhcchhhcCccceehhhHHHH
Confidence               99999999999999999999999999999986654432221 223457789999999876 6899999999999999


Q ss_pred             HHHhcCccccc
Q 044022          162 ELLAGRIHIWD  172 (241)
Q Consensus       162 ~~~~g~~p~~~  172 (241)
                      |++.++.-|..
T Consensus       250 ELLgRrILFQA  260 (449)
T KOG0664|consen  250 ELLQRKILFQA  260 (449)
T ss_pred             HHHhhhhhhhc
Confidence            99998877754

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.92  E-value=3.4e-26  Score=173.96  Aligned_cols=153  Identities=22%  Similarity=0.382  Sum_probs=123.2

Q ss_pred             cHHHHHHHHHHHHhc-CCCcccceee-eeeeCCcceEEEEecCCCCHHHhhcCCCc---hHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQM-SHNHILKRIG-CCLQTPIPILVFQSVEYGTLRDCIFGAPL---PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l-~h~~iv~~~~-~~~~~~~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ...+|.+|...--.| .|.||+.-|+ .|+..+.+..++||++.|+|..-+...+.   ...+++.|+++|+.|+|   +
T Consensus        63 t~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d~YvF~qE~aP~gdL~snv~~~GigE~~~K~v~~ql~SAi~fMH---s  139 (378)
T KOG1345|consen   63 TQADFVREFHYSFFLSPHQHIIDTYEVAFQTSDAYVFVQEFAPRGDLRSNVEAAGIGEANTKKVFAQLLSAIEFMH---S  139 (378)
T ss_pred             hHHHHHHHhccceeeccchhhhHHHHHHhhcCceEEEeeccCccchhhhhcCcccccHHHHHHHHHHHHHHHHHhh---c
Confidence            467899998876666 5889997665 66677888999999999999998877654   45679999999999999   9


Q ss_pred             CCceeccCCCCCeeecCC--CCeEEeeccCceecCCCCcceeecccccCCCccCccccccc-----CCCcchhhHHHHHH
Q 044022           87 RPIVLRNFKTQNILFNEE--NVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-----VLNEKSNVFSFGAF  159 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~--~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-----~~~~~~Di~s~G~~  159 (241)
                      +.+||||||.+|||+...  -.+|++|||.....+....     ....+-.|.+||.+...     ...+.+|+|.||++
T Consensus       140 knlVHRdlK~eNiLif~~df~rvKlcDFG~t~k~g~tV~-----~~~~~~~y~~pe~~~~~~ne~~~~~ps~D~WqfGIi  214 (378)
T KOG1345|consen  140 KNLVHRDLKAENILIFDADFYRVKLCDFGLTRKVGTTVK-----YLEYVNNYHAPELCDTVVNEKLVVNPSTDIWQFGII  214 (378)
T ss_pred             cchhhcccccceEEEecCCccEEEeeecccccccCceeh-----hhhhhcccCCcHHHhhccccceEecccccchheeee
Confidence            999999999999999543  4899999999876543321     12234457899877543     34678999999999


Q ss_pred             HHHHHhcCccccc
Q 044022          160 LFELLAGRIHIWD  172 (241)
Q Consensus       160 ~~~~~~g~~p~~~  172 (241)
                      +|..++|.+||+.
T Consensus       215 ~f~cltG~~PWQk  227 (378)
T KOG1345|consen  215 FFYCLTGKFPWQK  227 (378)
T ss_pred             eeeeecCCCcchh
Confidence            9999999999975

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.92  E-value=1.7e-25  Score=179.02  Aligned_cols=160  Identities=23%  Similarity=0.336  Sum_probs=132.3

Q ss_pred             cHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc-hHHHHHHHHHHHhchhhcCCCCCc
Q 044022           12 TYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL-PRLKIASDIVNSLAYLHFGFPRPI   89 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-~~~~~~~~i~~~l~~lh~~~~~~i   89 (241)
                      ...+..+|++.|..+ -+.||+++.+++-.+++.++|+||+++....++...... ....++..++.||+++|   ..||
T Consensus        77 ~p~ri~~El~~L~~~gG~~ni~~~~~~~rnnd~v~ivlp~~~H~~f~~l~~~l~~~~i~~Yl~~ll~Al~~~h---~~GI  153 (418)
T KOG1167|consen   77 SPSRILNELEMLYRLGGSDNIIKLNGCFRNNDQVAIVLPYFEHDRFRDLYRSLSLAEIRWYLRNLLKALAHLH---KNGI  153 (418)
T ss_pred             CchHHHHHHHHHHHhccchhhhcchhhhccCCeeEEEecccCccCHHHHHhcCCHHHHHHHHHHHHHHhhhhh---ccCc
Confidence            456688999999999 578999999999999999999999999999999887765 45678999999999999   9999


Q ss_pred             eeccCCCCCeeecCC-CCeEEeeccCceecC-----------------C-------------------------CCccee
Q 044022           90 VLRNFKTQNILFNEE-NVAKWFDFLLSISIP-----------------E-------------------------GETHIT  126 (241)
Q Consensus        90 vh~dl~~~nil~~~~-~~~~l~df~~~~~~~-----------------~-------------------------~~~~~~  126 (241)
                      |||||||.|+|.+.. +.-.|.|||++....                 .                         ......
T Consensus       154 vHRDiKpsNFL~n~~t~rg~LvDFgLA~~~d~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~p~g~~~~~~~~r~~~  233 (418)
T KOG1167|consen  154 VHRDIKPSNFLYNRRTQRGVLVDFGLAQRYDGYQQTEHSRSYSGRHATPAMGKDVHCQSVATASKPAGYYRRCNDGRPSE  233 (418)
T ss_pred             cccCCCccccccccccCCceEEechhHHHHHhhhhhhhhhhhhcccCCccccCcccccccccccCCCCceeccCCCccce
Confidence            999999999999865 566899999986110                 0                         000001


Q ss_pred             ecccccCCCccCccccccc-CCCcchhhHHHHHHHHHHHhcCccccccc
Q 044022          127 TDRVIGTRGYSAPEYISIC-VLNEKSNVFSFGAFLFELLAGRIHIWDLL  174 (241)
Q Consensus       127 ~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~~~~~~~g~~p~~~~~  174 (241)
                      .-...||++|+|||++..+ ..++++||||.|+|++.+++++.||....
T Consensus       234 ~anrAGT~GfRaPEvL~k~~~QttaiDiws~GVI~Lslls~~~PFf~a~  282 (418)
T KOG1167|consen  234 RANRAGTPGFRAPEVLFRCPRQTTAIDIWSAGVILLSLLSRRYPFFKAK  282 (418)
T ss_pred             ecccCCCCCCCchHHHhhccCcCCccceeeccceeehhhccccccccCc
Confidence            1135699999999999876 56789999999999999999999997643

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.92  E-value=1.9e-25  Score=170.34  Aligned_cols=204  Identities=19%  Similarity=0.232  Sum_probs=151.1

Q ss_pred             ccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc------hHHHHHHHHHHHhch
Q 044022            7 EYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL------PRLKIASDIVNSLAY   80 (241)
Q Consensus         7 ~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~------~~~~~~~~i~~~l~~   80 (241)
                      +......+.|..|.-.|+-+.||||.+++|.|.+..++.++.+||+.|||++.+.....      +..+++.+++.|++|
T Consensus       225 ~~t~risrdfneefp~lrifshpnilpvlgacnsppnlv~isq~mp~gslynvlhe~t~vvvd~sqav~faldiargmaf  304 (448)
T KOG0195|consen  225 EVTARISRDFNEEFPALRIFSHPNILPVLGACNSPPNLVIISQYMPFGSLYNVLHEQTSVVVDHSQAVRFALDIARGMAF  304 (448)
T ss_pred             hcchhhcchhhhhCcceeeecCCchhhhhhhccCCCCceEeeeeccchHHHHHHhcCccEEEecchHHHHHHHHHhhHHH
Confidence            33445667788899999999999999999999999999999999999999999988743      788999999999999


Q ss_pred             hhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCC---cchhhHHHH
Q 044022           81 LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLN---EKSNVFSFG  157 (241)
Q Consensus        81 lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~---~~~Di~s~G  157 (241)
                      ||+. +.-|.---|+...+++|.+.+.+|+--..-.++..       ....-.+.|++||.+...+-+   .++|+|||+
T Consensus       305 lhsl-ep~ipr~~lns~hvmidedltarismad~kfsfqe-------~gr~y~pawmspealqrkped~n~raadmwsfa  376 (448)
T KOG0195|consen  305 LHSL-EPMIPRFYLNSKHVMIDEDLTARISMADTKFSFQE-------VGRAYSPAWMSPEALQRKPEDLNIRAADMWSFA  376 (448)
T ss_pred             Hhhc-chhhhhhhcccceEEecchhhhheecccceeeeec-------cccccCcccCCHHHHhcCchhcchhhhhHHHHH
Confidence            9964 23344457889999999998887753222111111       112456789999999876543   578999999


Q ss_pred             HHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCC
Q 044022          158 AFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRP  237 (241)
Q Consensus       158 ~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rp  237 (241)
                      +++||+.|+..||.+...-+ .+...       .. ++     ....+++        +.+..+..++.-|+..||.+||
T Consensus       377 illwel~trevpfadlspme-cgmki-------al-eg-----lrv~ipp--------gis~hm~klm~icmnedpgkrp  434 (448)
T KOG0195|consen  377 ILLWELNTREVPFADLSPME-CGMKI-------AL-EG-----LRVHIPP--------GISRHMNKLMNICMNEDPGKRP  434 (448)
T ss_pred             HHHHHhhccccccccCCchh-hhhhh-------hh-cc-----ccccCCC--------CccHHHHHHHHHHhcCCCCcCC
Confidence            99999999999997743221 11111       00 11     1111122        2335688999999999999999


Q ss_pred             CCC
Q 044022          238 TMV  240 (241)
Q Consensus       238 t~~  240 (241)
                      .++
T Consensus       435 kfd  437 (448)
T KOG0195|consen  435 KFD  437 (448)
T ss_pred             Ccc
Confidence            886

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=99.90  E-value=1.2e-23  Score=175.54  Aligned_cols=202  Identities=23%  Similarity=0.315  Sum_probs=146.3

Q ss_pred             HHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc-----hHHHHHHHHHHHhchhhcCCCCCc-eeccCCC
Q 044022           23 AAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL-----PRLKIASDIVNSLAYLHFGFPRPI-VLRNFKT   96 (241)
Q Consensus        23 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-----~~~~~~~~i~~~l~~lh~~~~~~i-vh~dl~~   96 (241)
                      |+++.|.|+.+++|.+.+++..+.|.+||..|+|.+.+.....     -...++++|+.|+.|||   ...| +|+.++.
T Consensus         1 l~~l~h~n~~~f~g~~~~~~~~~~i~~~c~rGsl~D~i~~~~~~~d~~F~~s~~rdi~~Gl~ylh---~s~i~~hg~l~s   77 (484)
T KOG1023|consen    1 LRQLDHDNLNKFIGASVDGPEMIVIWEYCSRGSLLDILSNEDIKLDYFFILSFIRDISKGLAYLH---NSPIGYHGALKS   77 (484)
T ss_pred             CcccchhhhhhheeeEecCCceEEEEeeecCccHHhHHhccccCccHHHHHHHHHHHHHHHHHHh---cCcceeeeeecc
Confidence            4578999999999999999999999999999999999987543     35678999999999999   4444 9999999


Q ss_pred             CCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc---C----CCcchhhHHHHHHHHHHHhcCcc
Q 044022           97 QNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC---V----LNEKSNVFSFGAFLFELLAGRIH  169 (241)
Q Consensus        97 ~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~---~----~~~~~Di~s~G~~~~~~~~g~~p  169 (241)
                      .|++++..+.+|++|||+....................-|.|||.+...   .    .+.+.|+||||++++|+++++.|
T Consensus        78 ~nClvd~~w~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~aPellr~~~~~~~~~~~~~~gdiYs~~ii~~ei~~r~~~  157 (484)
T KOG1023|consen   78 SNCLVDSRWVLKLTDFGLNSLLEETAEPEAHHPIRKALLWTAPELLRGALSQSLESALTQKGDIYSFGIIMYEILFRSGP  157 (484)
T ss_pred             ccceeeeeEEEEechhhhcccccccccccccchhHHHHhccCHHHhcccccccccccccccCCeehHHHHHHHHHhccCc
Confidence            9999999999999999998665421111111111233458999999763   1    46779999999999999999999


Q ss_pred             cccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          170 IWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                      |.........     .+......+.+      .+...+......  +..+.+..++++||..+|.+||+++
T Consensus       158 ~~~~~~~~~~-----~eii~~~~~~~------~~~~rP~i~~~~--e~~~~l~~l~~~cw~e~P~~rPs~~  215 (484)
T KOG1023|consen  158 FDLRNLVEDP-----DEIILRVKKGG------SNPFRPSIELLN--ELPPELLLLVARCWEEIPEKRPSIE  215 (484)
T ss_pred             cccccccCCh-----HHHHHHHHhcC------CCCcCcchhhhh--hcchHHHHHHHHhcccChhhCccHH
Confidence            9764333211     22222211101      111112211111  2334688999999999999999985

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=8.5e-25  Score=189.81  Aligned_cols=207  Identities=15%  Similarity=0.202  Sum_probs=153.6

Q ss_pred             HHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC-Cc---hHHHHHHHHHHHhchhhcCCCCCcee
Q 044022           16 CINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA-PL---PRLKIASDIVNSLAYLHFGFPRPIVL   91 (241)
Q Consensus        16 ~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~-~~---~~~~~~~~i~~~l~~lh~~~~~~ivh   91 (241)
                      +..|+.+-..|+|+|++..+..+.+.....-+||||++ +|..++... ..   .+-.++.|++.|+.|+|   ..|+.|
T Consensus       368 i~sE~~i~~~l~h~~~~e~l~~~~~~~~~~~~mE~~~~-Dlf~~~~~~~~~~~~e~~c~fKqL~~Gv~y~h---~~Giah  443 (601)
T KOG0590|consen  368 ITSEFCIGSSLSHPNIIETLDIVQEIDGILQSMEYCPY-DLFSLVMSNGKLTPLEADCFFKQLLRGVKYLH---SMGLAH  443 (601)
T ss_pred             hhhheeecccccCCchhhhHHHHhhcccchhhhhcccH-HHHHHHhcccccchhhhhHHHHHHHHHHHHHH---hcCcee
Confidence            55677788889999999888877766555555999998 999998775 22   45678999999999999   999999


Q ss_pred             ccCCCCCeeecCCCCeEEeeccCceecCCCCcc--eeecccccCCCccCcccccccCCCc-chhhHHHHHHHHHHHhcCc
Q 044022           92 RNFKTQNILFNEENVAKWFDFLLSISIPEGETH--ITTDRVIGTRGYSAPEYISICVLNE-KSNVFSFGAFLFELLAGRI  168 (241)
Q Consensus        92 ~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~--~~~~~~~~~~~~~aPE~~~~~~~~~-~~Di~s~G~~~~~~~~g~~  168 (241)
                      ||+|++|+++..++.+||+|||.+.....+...  ......+|+.+|+|||++....|++ ..||||.|+++..|++|+.
T Consensus       444 rdlK~enll~~~~g~lki~Dfg~~~vf~~~~e~~~~~~~g~~gS~pY~apE~~~~~~ydpr~vDiwS~~ii~~~m~~~~~  523 (601)
T KOG0590|consen  444 RDLKLENLLVTENGILKIIDFGAASVFRYPWEKNIHESSGIVGSDPYLAPEVLTGKEYDPRAVDVWSCGIIYICMILGRF  523 (601)
T ss_pred             ccCccccEEEecCCceEEeecCcceeeccCcchhhhhhcCcccCCcCcCcccccccccCcchhhhhhccceEEEEecCCC
Confidence            999999999999999999999998776655433  3334567999999999999998886 5799999999999999999


Q ss_pred             ccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          169 HIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       169 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ||..........          .....     ....-....+..-...-+...+.++.+||+.||.+|.|+++
T Consensus       524 ~Wk~a~~~~~~~----------~~~~~-----~~~~~~~~~~~~~~~~lp~~~~~~~~~~l~~~P~~R~ti~~  581 (601)
T KOG0590|consen  524 PWKVAKKSDNSF----------KTNNY-----SDQRNIFEGPNRLLSLLPRETRIIIYRMLQLDPTKRITIEQ  581 (601)
T ss_pred             ccccccccccch----------hhhcc-----ccccccccChHHHHHhchhhHHHHHHHHccCChhheecHHH
Confidence            996632221100          00000     00000000000111133356788999999999999999863

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=99.85  E-value=2.5e-21  Score=154.84  Aligned_cols=188  Identities=17%  Similarity=0.276  Sum_probs=132.9

Q ss_pred             CCCcccceeeeeeeC---------------------------CcceEEEEecCCCCHHHhhcCCC---chHHHHHHHHHH
Q 044022           27 SHNHILKRIGCCLQT---------------------------PIPILVFQSVEYGTLRDCIFGAP---LPRLKIASDIVN   76 (241)
Q Consensus        27 ~h~~iv~~~~~~~~~---------------------------~~~~lv~e~~~~~sL~~~l~~~~---~~~~~~~~~i~~   76 (241)
                      +|||||++.+.|.++                           ..+|+||.-+. -||..++-...   ....-++.|+++
T Consensus       274 ~HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~g~g~~~tlylvMkrY~-~tLr~yl~~~~~s~r~~~~~laQlLE  352 (598)
T KOG4158|consen  274 KHPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPSGAGEPKTLYLVMKRYR-QTLREYLWTRHRSYRTGRVILAQLLE  352 (598)
T ss_pred             CCCCEEeehhhhhhhhccCCchhhhCcccccceecccccCCCceEEEehhcch-hhHHHHHhcCCCchHHHHHHHHHHHH
Confidence            699999999988752                           36789999886 59999886543   245668899999


Q ss_pred             HhchhhcCCCCCceeccCCCCCeeec--CC--CCeEEeeccCceecCCCCccee----ecccccCCCccCcccccccC--
Q 044022           77 SLAYLHFGFPRPIVLRNFKTQNILFN--EE--NVAKWFDFLLSISIPEGETHIT----TDRVIGTRGYSAPEYISICV--  146 (241)
Q Consensus        77 ~l~~lh~~~~~~ivh~dl~~~nil~~--~~--~~~~l~df~~~~~~~~~~~~~~----~~~~~~~~~~~aPE~~~~~~--  146 (241)
                      |+.|||   ++++.|||+|.+|||+.  .+  ....|+|||++-..........    .-..-|+...+|||+....+  
T Consensus       353 av~hL~---~hgvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLAd~~hGlqlpy~S~~Vd~GGNa~lmAPEi~ta~PGp  429 (598)
T KOG4158|consen  353 AVTHLH---KHGVAHRDLKSDNILLELDDDEIPQLVVADFGCCLADDNHGLQLPYESDEVDLGGNAKLMAPEIATAVPGP  429 (598)
T ss_pred             HHHHHH---HccchhhcccccceEEEecCCCCcEEEEcccceeeeccccccccccccccccCCCcceecchhhhhcCCCC
Confidence            999999   99999999999999983  33  4567899999865443211111    01123667789999886532  


Q ss_pred             ----CCcchhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHH
Q 044022          147 ----LNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASA  222 (241)
Q Consensus       147 ----~~~~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (241)
                          .-.++|.|+.|-+.||+++..-||+..-       +...+... + .+.++     +.+..        ..+..++
T Consensus       430 ~avvny~kAD~WA~GalaYEIfg~~NPFY~rG-------em~L~~r~-Y-qe~qL-----Palp~--------~vpp~~r  487 (598)
T KOG4158|consen  430 NAVVNYEKADTWAAGALAYEIFGRSNPFYKRG-------EMLLDTRT-Y-QESQL-----PALPS--------RVPPVAR  487 (598)
T ss_pred             ceeeccchhhhhhhhhhHHHHhccCCcccccc-------hheechhh-h-hhhhC-----CCCcc--------cCChHHH
Confidence                1258999999999999999999998721       11111111 1 11111     22222        2336788


Q ss_pred             HHHHHhccCCCCCCCCCC
Q 044022          223 QLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       223 ~l~~~cl~~~p~~Rpt~~  240 (241)
                      +++...|+.||++|+++.
T Consensus       488 qlV~~lL~r~pskRvsp~  505 (598)
T KOG4158|consen  488 QLVFDLLKRDPSKRVSPN  505 (598)
T ss_pred             HHHHHHhcCCccccCCcc
Confidence            999999999999999863

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.85  E-value=7.9e-20  Score=148.37  Aligned_cols=215  Identities=27%  Similarity=0.349  Sum_probs=158.2

Q ss_pred             cHHHHHHHHHHHHhcCCC-cccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----c---hHHHHHHHHHHHhchhhc
Q 044022           12 TYGSCINNITYAAQMSHN-HILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----L---PRLKIASDIVNSLAYLHF   83 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~-~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~---~~~~~~~~i~~~l~~lh~   83 (241)
                      ....+.+|++++..+.|+ +++++.+.+......+++++++.++++.+++....    .   ....++.+++.++.++| 
T Consensus        40 ~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H-  118 (384)
T COG0515          40 EVERFLREIQILASLNHPPNIVKLYDFFQDEGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLH-  118 (384)
T ss_pred             HHHHHHHHHHHHHHccCCcceeeEEEEEecCCEEEEEEecCCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHH-
Confidence            477899999999999988 79999999977777899999999999997776542    1   45778999999999999 


Q ss_pred             CCCCCceeccCCCCCeeecCCC-CeEEeeccCceecCCCCcce----eecccccCCCccCcccccc---cCCCcchhhHH
Q 044022           84 GFPRPIVLRNFKTQNILFNEEN-VAKWFDFLLSISIPEGETHI----TTDRVIGTRGYSAPEYISI---CVLNEKSNVFS  155 (241)
Q Consensus        84 ~~~~~ivh~dl~~~nil~~~~~-~~~l~df~~~~~~~~~~~~~----~~~~~~~~~~~~aPE~~~~---~~~~~~~Di~s  155 (241)
                        ..+++|||+||+||+++..+ .++++|||.+..........    ......++..|+|||.+.+   .......|+||
T Consensus       119 --~~~~~hrd~kp~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~t~~~~~pe~~~~~~~~~~~~~~D~~s  196 (384)
T COG0515         119 --SKGIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWS  196 (384)
T ss_pred             --hCCeeccCCCHHHeeecCCCCeEEEeccCcceecCCCCccccccccccccccccccCCHHHhcCCCCCCCCchHhHHH
Confidence              89999999999999999998 79999999987554433221    2345678999999999987   57889999999


Q ss_pred             HHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCC
Q 044022          156 FGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPED  235 (241)
Q Consensus       156 ~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~  235 (241)
                      +|++++++++|..||......     ................  ...........    ......+.+++..++..+|..
T Consensus       197 ~g~~~~~~~~~~~p~~~~~~~-----~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  265 (384)
T COG0515         197 LGITLYELLTGLPPFEGEKNS-----SATSQTLKIILELPTP--SLASPLSPSNP----ELISKAASDLLKKLLAKDPKN  265 (384)
T ss_pred             HHHHHHHHHhCCCCCCCCCcc-----ccHHHHHHHHHhcCCc--ccccccCcccc----chhhHHHHHHHHHHHhcCchh
Confidence            999999999999996442111     0011111111111110  00000000000    123356789999999999999


Q ss_pred             CCCCC
Q 044022          236 RPTMV  240 (241)
Q Consensus       236 Rpt~~  240 (241)
                      |.+..
T Consensus       266 r~~~~  270 (384)
T COG0515         266 RLSSS  270 (384)
T ss_pred             cCCHH
Confidence            98753

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.84  E-value=5.9e-22  Score=174.73  Aligned_cols=212  Identities=22%  Similarity=0.212  Sum_probs=145.3

Q ss_pred             CcccccccccccHHHHHH---HHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCIN---NITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASD   73 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~---e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~   73 (241)
                      ||+|-+.-..-..+.|.+   |++ ....++||.+++.-+-...+-.|||-+|.. -+|+|++...+.    .+.-++.|
T Consensus        51 vKVFvk~~p~~sL~~~~qrL~~ik-~~l~~~pn~lPfqk~~~t~kAAylvRqyvk-hnLyDRlSTRPFL~~iEKkWiaFQ  128 (1431)
T KOG1240|consen   51 VKVFVKQDPTISLRPFKQRLEEIK-FALMKAPNCLPFQKVLVTDKAAYLVRQYVK-HNLYDRLSTRPFLVLIEKKWIAFQ  128 (1431)
T ss_pred             EEEEeccCCCCCchHHHHHHHHHH-HHhhcCCcccchHHHHHhhHHHHHHHHHHh-hhhhhhhccchHHHHHHHHHHHHH
Confidence            567765444434444444   454 444599999999988888888899999997 599999987765    23346889


Q ss_pred             HHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceec--CCC----CcceeecccccCCCccCccccccc--
Q 044022           74 IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISI--PEG----ETHITTDRVIGTRGYSAPEYISIC--  145 (241)
Q Consensus        74 i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~--~~~----~~~~~~~~~~~~~~~~aPE~~~~~--  145 (241)
                      ++.|+.-+|   ..+|+|||||.+|||+..=+.+.|+||...++.  +.+    -...-.++ ..-.+|.|||.+...  
T Consensus       129 LL~al~qcH---~~gVcHGDIKsENILiTSWNW~~LtDFAsFKPtYLPeDNPadf~fFFDTS-rRRtCYiAPERFv~~~~  204 (1431)
T KOG1240|consen  129 LLKALSQCH---KLGVCHGDIKSENILITSWNWLYLTDFASFKPTYLPEDNPADFTFFFDTS-RRRTCYIAPERFVSALG  204 (1431)
T ss_pred             HHHHHHHHH---HcCccccccccceEEEeeechhhhhcccccCCccCCCCCcccceEEEecC-CceeeecChHhhhcccc
Confidence            999999999   999999999999999999999999999765432  111    11111111 223469999988652  


Q ss_pred             --------C-CCcchhhHHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHH
Q 044022          146 --------V-LNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKE  215 (241)
Q Consensus       146 --------~-~~~~~Di~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (241)
                              . .+++=||+|+||++.|+++ |++||.-.+             +..+...+  ...+...+..        
T Consensus       205 ~~~~~q~~~~L~paMDIFS~GCViaELf~Eg~PlF~LSQ-------------L~aYr~~~--~~~~e~~Le~--------  261 (1431)
T KOG1240|consen  205 KTSVGQDAPLLTPAMDIFSAGCVIAELFLEGRPLFTLSQ-------------LLAYRSGN--ADDPEQLLEK--------  261 (1431)
T ss_pred             ccccCCcccccChhhhhhhhhHHHHHHHhcCCCcccHHH-------------HHhHhccC--ccCHHHHHHh--------
Confidence                    1 4677899999999999998 678874311             11110000  0000000000        


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          216 QQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       216 ~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      -+...++.++..|++.||++|.+|+|
T Consensus       262 Ied~~~Rnlil~Mi~rdPs~RlSAed  287 (1431)
T KOG1240|consen  262 IEDVSLRNLILSMIQRDPSKRLSAED  287 (1431)
T ss_pred             CcCccHHHHHHHHHccCchhccCHHH
Confidence            11146789999999999999999874

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.82  E-value=6e-20  Score=150.55  Aligned_cols=122  Identities=16%  Similarity=0.053  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHhcCCCcccc-eeeeeeeCCcceEEEEecCCCCHHHhhcCCCchHHHHHHHHHHHhchhhcCCCCCcee
Q 044022           13 YGSCINNITYAAQMSHNHILK-RIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDIVNSLAYLHFGFPRPIVL   91 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~iv~-~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~i~~~l~~lh~~~~~~ivh   91 (241)
                      ...|.+|+++|++++|+|+++ ++++    +..++||||++|++|... ..  .....++.+++.+|.|||   +.+|+|
T Consensus        65 ~~~~~~E~~iL~~L~h~~iv~~l~~~----~~~~LVmE~~~G~~L~~~-~~--~~~~~~~~~i~~aL~~lH---~~gIiH  134 (365)
T PRK09188         65 RHLAAREIRALKTVRGIGVVPQLLAT----GKDGLVRGWTEGVPLHLA-RP--HGDPAWFRSAHRALRDLH---RAGITH  134 (365)
T ss_pred             HHHHHHHHHHHHhccCCCCCcEEEEc----CCcEEEEEccCCCCHHHh-Cc--cchHHHHHHHHHHHHHHH---HCCCee
Confidence            556899999999999999985 4432    457999999999999743 21  123578889999999999   999999


Q ss_pred             ccC-CCCCeeecCCCCeEEeeccCceecCCCCccee------ecccccCCCccCcccccc
Q 044022           92 RNF-KTQNILFNEENVAKWFDFLLSISIPEGETHIT------TDRVIGTRGYSAPEYISI  144 (241)
Q Consensus        92 ~dl-~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~------~~~~~~~~~~~aPE~~~~  144 (241)
                      ||| ||+|||++.++.++|+|||+++..........      .....+++.|+|||++..
T Consensus       135 rDL~KP~NILv~~~~~ikLiDFGlA~~~~~~~~~~~~~~~~d~~~~~~~~~~~~pe~~~~  194 (365)
T PRK09188        135 NDLAKPQNWLMGPDGEAAVIDFQLASVFRRRGALYRIAAYEDLRHLLKHKRTYAPDALTP  194 (365)
T ss_pred             CCCCCcceEEEcCCCCEEEEECccceecccCcchhhhhhhhhhhhhhccCccCCcccCCh
Confidence            999 99999999999999999999987654331111      124457788999999853

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=99.78  E-value=5.4e-20  Score=151.75  Aligned_cols=166  Identities=27%  Similarity=0.369  Sum_probs=123.4

Q ss_pred             cceEEEEecCCCCHHHhhcCCCc-------hHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCc
Q 044022           43 IPILVFQSVEYGTLRDCIFGAPL-------PRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLS  115 (241)
Q Consensus        43 ~~~lv~e~~~~~sL~~~l~~~~~-------~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~  115 (241)
                      ++++.|++|+..+|.+++.....       ..+.++.|++.|+.|      ++.+|+|+||.||+...+..+||+|||+.
T Consensus       330 ~lyI~Mn~c~~~tledWl~rr~~~e~~s~s~~~~~~~q~~~~~~y------k~~ihrdlkp~nif~~~d~q~kIgDFgl~  403 (516)
T KOG1033|consen  330 YLYIQMNLCEKETLEDWLRRRRTGEERSLSLMLDIFKQIAPAVEY------KGLIHRDLKPSNIFFSDDDQLKIGDFGLV  403 (516)
T ss_pred             chhhhhhhhhhhhHHHHhhCCCcccccchhHHHHHHHhhccchhh------ccchhhhccccccccccchhhhhhhhhhe
Confidence            57899999999999999974422       356788899999987      67899999999999999999999999998


Q ss_pred             eecCCCC----cceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHH
Q 044022          116 ISIPEGE----THITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKN  190 (241)
Q Consensus       116 ~~~~~~~----~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~  190 (241)
                      .......    .....+..+||..||+||.+.+..|+.++||||||+|++|++. -.-++..               ...
T Consensus       404 ts~~~~~~~~~~~a~~t~~~gt~~YmsPEQi~g~~y~~kvdIyaLGlil~EL~~~f~T~~er---------------~~t  468 (516)
T KOG1033|consen  404 TSQDKDETVAPAAASHTQQVGTLLYMSPEQIRGQQYSEKVDIYALGLILAELLIQFSTQFER---------------IAT  468 (516)
T ss_pred             eecccCCcccchhhhhhhcccccccCCHHHHhhhhhhhhcchhhHHHHHHHHHHHhccHHHH---------------HHh
Confidence            8776554    2333456689999999999999999999999999999999997 2222211               001


Q ss_pred             HhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          191 YLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                      .  .....+..++....++|         .-..|+.+++...|.+||++.
T Consensus       469 ~--~d~r~g~ip~~~~~d~p---------~e~~ll~~lls~~p~~RP~~~  507 (516)
T KOG1033|consen  469 L--TDIRDGIIPPEFLQDYP---------EEYTLLQQLLSPSPEERPSAI  507 (516)
T ss_pred             h--hhhhcCCCChHHhhcCc---------HHHHHHHHhcCCCcccCchHH
Confidence            0  00011112222222222         334799999999999999763

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.78  E-value=1.5e-18  Score=130.59  Aligned_cols=148  Identities=12%  Similarity=0.071  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHhcC-CCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCchHHHHHHHHHHHhchhhcCCCCCceecc
Q 044022           15 SCINNITYAAQMS-HNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDIVNSLAYLHFGFPRPIVLRN   93 (241)
Q Consensus        15 ~~~~e~~~l~~l~-h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~i~~~l~~lh~~~~~~ivh~d   93 (241)
                      .|.+|+++|++|. |+++++++++    +..+++|||+.|.+|.+....   ....++.+++.++.++|   ..|++|||
T Consensus        47 l~~rE~~iL~~L~~~~~vP~ll~~----~~~~lvmeyI~G~~L~~~~~~---~~~~~~~qi~~~L~~lH---~~GIvHrD  116 (218)
T PRK12274         47 LARREALALRQLDGLPRTPRLLHW----DGRHLDRSYLAGAAMYQRPPR---GDLAYFRAARRLLQQLH---RCGVAHND  116 (218)
T ss_pred             HHHHHHHHHHhcCCCCCCCEEEEE----cCEEEEEeeecCccHHhhhhh---hhHHHHHHHHHHHHHHH---HCcCccCC
Confidence            5789999999995 4789999886    346899999999999765432   23467889999999999   99999999


Q ss_pred             C-CCCCeeecCCCCeEEeeccCceecCCCCcc----ee-------ecccccCCCccCccccccc-CCC-cchhhHHHHHH
Q 044022           94 F-KTQNILFNEENVAKWFDFLLSISIPEGETH----IT-------TDRVIGTRGYSAPEYISIC-VLN-EKSNVFSFGAF  159 (241)
Q Consensus        94 l-~~~nil~~~~~~~~l~df~~~~~~~~~~~~----~~-------~~~~~~~~~~~aPE~~~~~-~~~-~~~Di~s~G~~  159 (241)
                      | ||.|||++.++.++|+|||++.........    ..       ......++.+++|+..... ..+ ...+.++-|.-
T Consensus       117 L~kp~NILv~~~g~i~LIDFG~A~~~~~~~~~~r~L~~rDl~~llk~~~~y~~~~l~~~~~~~l~~~~~~~~~w~~~g~~  196 (218)
T PRK12274        117 LAKEANWLVQEDGSPAVIDFQLAVRGNPRARWMRLLAREDLRHLLKHKRMYCPAALTPVERRVLKRTSWIRELWFATGKP  196 (218)
T ss_pred             CCCcceEEEcCCCCEEEEECCCceecCCcchHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhhccchhHHHHHHHhcch
Confidence            9 799999999999999999999854433210    00       0012245556666544322 233 45567799999


Q ss_pred             HHHHHhcCccccc
Q 044022          160 LFELLAGRIHIWD  172 (241)
Q Consensus       160 ~~~~~~g~~p~~~  172 (241)
                      +|.++||..+.+.
T Consensus       197 ~~~~~~~~~~~~~  209 (218)
T PRK12274        197 VYRFVTRRVLHWE  209 (218)
T ss_pred             HHHHHhccCCccc
Confidence            9999999988755

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.77  E-value=2.5e-19  Score=150.58  Aligned_cols=186  Identities=22%  Similarity=0.244  Sum_probs=147.5

Q ss_pred             HHHHHHHHHHhcC-CCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCCCCc
Q 044022           15 SCINNITYAAQMS-HNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFPRPI   89 (241)
Q Consensus        15 ~~~~e~~~l~~l~-h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~~~i   89 (241)
                      ....|-.++...+ ||.+|++...++.+...+++.++..+|.|...+.....    ....+...++.+++++|   +.++
T Consensus        42 ~t~~er~il~~~~~~~f~v~lhyafqt~~kl~l~ld~~rgg~lft~l~~~~~f~~~~~~~~~aelaLald~lh---~l~i  118 (612)
T KOG0603|consen   42 HTKQERIILAFVHNTPFLVKLHYAFQTDGKLYLILDFLRGGDLFTRLSKEVMFDELDVAFYLAELALALDHLH---KLGI  118 (612)
T ss_pred             ccccHHHHHhhccCCCceeeeeeeeccccchhHhhhhcccchhhhccccCCchHHHHHHHHHHHHHHHHhhcc---hhHH
Confidence            4556777888886 99999999999999999999999999999988877644    23456778899999999   9999


Q ss_pred             eeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcCcc
Q 044022           90 VLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIH  169 (241)
Q Consensus        90 vh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~~p  169 (241)
                      +++|+|++||+++.+|.+++.|||.++.......      .+|+..|||||...  .....+|.||||++.++|++|..|
T Consensus       119 iyrd~k~enilld~~Ghi~~tdfglske~v~~~~------~cgt~eymApEI~~--gh~~a~D~ws~gvl~felltg~~p  190 (612)
T KOG0603|consen  119 AYRDYKLENVLLLLEGHIKLTDFGLSKEAVKEKI------ACGTYEYRAPEIIN--GHLSAADWWSFGVLAFELLTGTLP  190 (612)
T ss_pred             HHhcccccceeecccCccccCCchhhhHhHhhhh------cccchhhhhhHhhh--ccCCcccchhhhhhHHHHhhCCCC
Confidence            9999999999999999999999999876544321      27899999999998  567899999999999999999999


Q ss_pred             cccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCC
Q 044022          170 IWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM  239 (241)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~  239 (241)
                      |..             +.+..+.+...    .-+           ...+....+++.+++..+|..|.-.
T Consensus       191 f~~-------------~~~~~Il~~~~----~~p-----------~~l~~~a~~~~~~l~~r~p~nrLg~  232 (612)
T KOG0603|consen  191 FGG-------------DTMKRILKAEL----EMP-----------RELSAEARSLFRQLFKRNPENRLGA  232 (612)
T ss_pred             Cch-------------HHHHHHhhhcc----CCc-----------hhhhHHHHHHHHHHHhhCHHHHhcc
Confidence            954             22333322111    000           1334556788888888888887543

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.76  E-value=7.2e-19  Score=134.80  Aligned_cols=128  Identities=13%  Similarity=0.090  Sum_probs=98.7

Q ss_pred             HHHHHHHHHhcCCCcccceeeeeeeC--------CcceEEEEecCCCCHHHhhcCCCchHHHHHHHHHHHhchhhcCCCC
Q 044022           16 CINNITYAAQMSHNHILKRIGCCLQT--------PIPILVFQSVEYGTLRDCIFGAPLPRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        16 ~~~e~~~l~~l~h~~iv~~~~~~~~~--------~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      +.+|++.+.++.|++|.....++...        +..+++|||++|.+|.++....    .....+++.++..+|   ..
T Consensus        82 ~e~Ea~~l~rL~~~GI~~~~d~~~~~~~~~~~~~~~~~lvmEyi~G~tL~~~~~~~----~~~~~~i~~~l~~lH---~~  154 (232)
T PRK10359         82 YENLIVQTDRVRSEGLASLNDFYLLAERKTLRYAHTYIMLIEYIEGVELNDMPEIS----EDVKAKIKASIESLH---QH  154 (232)
T ss_pred             HHHHHHHHHHHHHCCCCcceEeeeecccccccccCCeEEEEEEECCccHHHhhhcc----HHHHHHHHHHHHHHH---Hc
Confidence            67999999999999999998886532        3578999999999998874321    234668999999999   99


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~  165 (241)
                      +++|||++|.|++++.++ ++++|||...........              ..+.....+..++|+||||+.+..+..
T Consensus       155 gi~H~Dikp~Nili~~~g-i~liDfg~~~~~~e~~a~--------------d~~vler~y~~~~di~~lg~~~~~~~~  217 (232)
T PRK10359        155 GMVSGDPHKGNFIVSKNG-LRIIDLSGKRCTAQRKAK--------------DRIDLERHYGIKNEIKDLGYYLLIYKK  217 (232)
T ss_pred             CCccCCCChHHEEEeCCC-EEEEECCCcccccchhhH--------------HHHHHHhHhcccccccceeEeehHHHH
Confidence            999999999999999988 999999987644221110              012333445678999999998765543

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.74  E-value=1.3e-17  Score=136.38  Aligned_cols=154  Identities=19%  Similarity=0.179  Sum_probs=126.6

Q ss_pred             HHHHHHHHHHhcCC----Ccccceeeee-eeCCcceEEEEecCCCCHHHhhcCCCc------hHHHHHHHHHHHhchhhc
Q 044022           15 SCINNITYAAQMSH----NHILKRIGCC-LQTPIPILVFQSVEYGTLRDCIFGAPL------PRLKIASDIVNSLAYLHF   83 (241)
Q Consensus        15 ~~~~e~~~l~~l~h----~~iv~~~~~~-~~~~~~~lv~e~~~~~sL~~~l~~~~~------~~~~~~~~i~~~l~~lh~   83 (241)
                      .+..|+.++..+..    +++..+++.. ......++||+.+ |.+|.++....+.      +.+.++.|++.+|.++| 
T Consensus        62 ~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~~~~iVM~l~-G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~~lH-  139 (322)
T KOG1164|consen   62 VLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTEDFNFIVMSLL-GPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALEDLH-  139 (322)
T ss_pred             cchhHHHHHHHHhhhcCCCCCCEEEEeccCCCceeEEEEecc-CccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHHHHH-
Confidence            67889999999973    5888888888 4677889999988 7999998754431      57889999999999999 


Q ss_pred             CCCCCceeccCCCCCeeecCC-----CCeEEeeccCce--ecCCCCc----cee--ecccccCCCccCcccccccCCCcc
Q 044022           84 GFPRPIVLRNFKTQNILFNEE-----NVAKWFDFLLSI--SIPEGET----HIT--TDRVIGTRGYSAPEYISICVLNEK  150 (241)
Q Consensus        84 ~~~~~ivh~dl~~~nil~~~~-----~~~~l~df~~~~--~~~~~~~----~~~--~~~~~~~~~~~aPE~~~~~~~~~~  150 (241)
                        +.|++||||||.|+++...     ..+.+.|||+++  .......    ...  .....||..|.++....+...+.+
T Consensus       140 --~~G~iHRDiKp~N~~~g~~~~~~~~~~~llDfGlar~~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~~~H~~~e~~r~  217 (322)
T KOG1164|consen  140 --SKGFIHRDIKPENFVVGQSSRSEVRTLYLLDFGLARRFKYVGDSGGNLRPPRPQKGLFRGTLRYASINVHLGIEQGRR  217 (322)
T ss_pred             --hcCcccCCcCHHHeeecCCCCcccceEEEEecCCCccccccCCCCcccccCCCCccCCCCccccccHHHhCCCccCCc
Confidence              9999999999999999865     468999999998  3222211    111  123459999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCccccc
Q 044022          151 SNVFSFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       151 ~Di~s~G~~~~~~~~g~~p~~~  172 (241)
                      .|+||++.++.++..|..||..
T Consensus       218 DDles~~Y~l~el~~g~LPW~~  239 (322)
T KOG1164|consen  218 DDLESLFYMLLELLKGSLPWEA  239 (322)
T ss_pred             hhhhhHHHHHHHHhcCCCCCcc
Confidence            9999999999999999999955

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.71  E-value=5.1e-18  Score=127.66  Aligned_cols=163  Identities=17%  Similarity=0.147  Sum_probs=131.2

Q ss_pred             ccccccHHHHHHHHHHHHhcCC-CcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc-----hHHHHHHHHHHHhch
Q 044022            7 EYHRHTYGSCINNITYAAQMSH-NHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL-----PRLKIASDIVNSLAY   80 (241)
Q Consensus         7 ~~~~~~~~~~~~e~~~l~~l~h-~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-----~~~~~~~~i~~~l~~   80 (241)
                      |++.....++..|.++...|++ ..|.++..+..+.....+||+++ |.||+++.+-...     +.+-++-|++.-+.|
T Consensus        48 Es~~a~hpqL~yEskvY~iL~~g~GiP~i~~y~~e~~ynvlVMdLL-GPsLEdLfnfC~R~ftmkTvLMLaDQml~RiEy  126 (341)
T KOG1163|consen   48 ESSKAKHPQLLYESKVYRILQGGVGIPHIRHYGTEKDYNVLVMDLL-GPSLEDLFNFCSRRFTMKTVLMLADQMLSRIEY  126 (341)
T ss_pred             ecccCCCcchhHHHHHHHHhccCCCCchhhhhccccccceeeeecc-CccHHHHHHHHhhhhhHHhHHHHHHHHHHHHHH
Confidence            4455567788999999999987 67778888888888899999999 7899998754322     567788999999999


Q ss_pred             hhcCCCCCceeccCCCCCeeecC---CCCeEEeeccCceecCCCCcc-----eeecccccCCCccCcccccccCCCcchh
Q 044022           81 LHFGFPRPIVLRNFKTQNILFNE---ENVAKWFDFLLSISIPEGETH-----ITTDRVIGTRGYSAPEYISICVLNEKSN  152 (241)
Q Consensus        81 lh~~~~~~ivh~dl~~~nil~~~---~~~~~l~df~~~~~~~~~~~~-----~~~~~~~~~~~~~aPE~~~~~~~~~~~D  152 (241)
                      +|   .++++||||||+|+|+.-   ...+.++|||+++...+..+.     .......||..|.+--...+...+...|
T Consensus       127 vH---~r~fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaKky~d~~t~~HIpyre~r~ltGTaRYASinAh~g~eqSRRDD  203 (341)
T KOG1163|consen  127 VH---LRNFIHRDIKPDNFLMGLGRHCNKLYLIDFGLAKKYRDIRTRQHIPYREDRNLTGTARYASINAHLGIEQSRRDD  203 (341)
T ss_pred             HH---hhccccccCCccceeeccccccceEEEEeccchhhhccccccccCccccCCccceeeeehhhhhhhhhhhhhhhh
Confidence            99   999999999999999964   456889999999876543221     2223456888888877777667788899


Q ss_pred             hHHHHHHHHHHHhcCcccccc
Q 044022          153 VFSFGAFLFELLAGRIHIWDL  173 (241)
Q Consensus       153 i~s~G~~~~~~~~g~~p~~~~  173 (241)
                      +=|+|.++.++-.|..||+.+
T Consensus       204 meSvgYvLmYfnrG~LPWQgl  224 (341)
T KOG1163|consen  204 MESVGYVLMYFNRGSLPWQGL  224 (341)
T ss_pred             hhhhcceeeeeecCCCccccc
Confidence            999999999999999999763

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.70  E-value=1.6e-17  Score=131.18  Aligned_cols=156  Identities=19%  Similarity=0.250  Sum_probs=102.7

Q ss_pred             ceEEEEecCCCCHHHhhcC-----CCc------hHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeec
Q 044022           44 PILVFQSVEYGTLRDCIFG-----APL------PRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDF  112 (241)
Q Consensus        44 ~~lv~e~~~~~sL~~~l~~-----~~~------~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df  112 (241)
                      .+++|+-+. ++|.+++..     ...      .++.+-.|++..+++||   ..|+||+||+|+|++++.+|.+.|+||
T Consensus       114 ~~~l~P~~~-~dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh---~~GlVHgdi~~~nfll~~~G~v~Lg~F  189 (288)
T PF14531_consen  114 RFLLMPRAQ-GDLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLH---SYGLVHGDIKPENFLLDQDGGVFLGDF  189 (288)
T ss_dssp             EEEEEE--S-EEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHH---HTTEEEST-SGGGEEE-TTS-EEE--G
T ss_pred             hhhccchhh-hcHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHh---hcceEecccceeeEEEcCCCCEEEcCh
Confidence            367777774 789887542     111      24556689999999999   999999999999999999999999999


Q ss_pred             cCceecCCCCcceeecccccCCCccCccccccc--------CCCcchhhHHHHHHHHHHHhcCcccccccccCCCcccch
Q 044022          113 LLSISIPEGETHITTDRVIGTRGYSAPEYISIC--------VLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFF  184 (241)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~--------~~~~~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~  184 (241)
                      +...........     ...+..|.+||.....        .++.+.|.|++|+++|.+++|..||...........   
T Consensus       190 ~~~~r~g~~~~~-----~~~~~~~~PPe~~~~~~~~~~~~~~~t~~~DaW~LG~~ly~lWC~~lPf~~~~~~~~~~~---  261 (288)
T PF14531_consen  190 SSLVRAGTRYRC-----SEFPVAFTPPELESCAGQFGQNNAPYTFATDAWQLGITLYSLWCGRLPFGLSSPEADPEW---  261 (288)
T ss_dssp             GGEEETTEEEEG-----GGS-TTTS-HHHHHHHTSCHHSEEEE-HHHHHHHHHHHHHHHHHSS-STCCCGGGSTSGG---
T ss_pred             HHHeecCceeec-----cCCCcccCChhhhhhhcccCcccceeeeccCHHHHHHHHHHHHHccCCCCCCCccccccc---
Confidence            877654432211     2334678899977542        467889999999999999999999976432211100   


Q ss_pred             HHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCC
Q 044022          185 NEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDR  236 (241)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~R  236 (241)
                                 .+..+.              ..++.++.||..+|+.||.+|
T Consensus       262 -----------~f~~C~--------------~~Pe~v~~LI~~lL~~~~~~R  288 (288)
T PF14531_consen  262 -----------DFSRCR--------------DMPEPVQFLIRGLLQRNPEDR  288 (288)
T ss_dssp             -----------GGTTSS-----------------HHHHHHHHHHT-SSGGGS
T ss_pred             -----------cchhcC--------------CcCHHHHHHHHHHccCCcccC
Confidence                       111111              344789999999999999988

>PRK10345 hypothetical protein; Provisional

Probab=99.70  E-value=6.3e-17  Score=123.49  Aligned_cols=101  Identities=17%  Similarity=0.102  Sum_probs=81.4

Q ss_pred             cHHHHHHHHHHHHhc-----CCCcccceeeeeeeCC---c-ceEEEEe--cCCCCHHHhhcCCCc-hHHHHHHHHHHHh-
Q 044022           12 TYGSCINNITYAAQM-----SHNHILKRIGCCLQTP---I-PILVFQS--VEYGTLRDCIFGAPL-PRLKIASDIVNSL-   78 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l-----~h~~iv~~~~~~~~~~---~-~~lv~e~--~~~~sL~~~l~~~~~-~~~~~~~~i~~~l-   78 (241)
                      ..+.+.+|+++++++     .||||++++|++.++.   . +.+|+||  +.++||.++++.... ....++.+++.++ 
T Consensus        39 ~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~v~~~I~e~~G~~~~tL~~~l~~~~~~e~~~~~~~~L~~l~  118 (210)
T PRK10345         39 GDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGYVYDVIADFDGKPSITLTEFAEQCRYEEDVAQLRQLLKKLK  118 (210)
T ss_pred             hHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeEEEEEEecCCCCcchhHHHHHHcccccHhHHHHHHHHHHHH
Confidence            456789999999999     5799999999998763   3 3478999  557999999976432 2245677888777 


Q ss_pred             chhhcCCCCCceeccCCCCCeeecCC----CCeEEeeccCc
Q 044022           79 AYLHFGFPRPIVLRNFKTQNILFNEE----NVAKWFDFLLS  115 (241)
Q Consensus        79 ~~lh~~~~~~ivh~dl~~~nil~~~~----~~~~l~df~~~  115 (241)
                      .|||   +.+|+||||||+|||++..    ..++|+||+.+
T Consensus       119 ~yLh---~~~IvhrDlKp~NILl~~~~~~~~~~~LiDg~G~  156 (210)
T PRK10345        119 RYLL---DNRIVTMELKPQNILCQRISESEVIPVVCDNIGE  156 (210)
T ss_pred             HHHH---HCCEeecCCCHHHEEEeccCCCCCcEEEEECCCC
Confidence            8999   9999999999999999743    47999995433

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.64  E-value=7e-16  Score=121.13  Aligned_cols=158  Identities=16%  Similarity=0.172  Sum_probs=132.3

Q ss_pred             ccHHHHHHHHHHHHhcC-CCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc-----hHHHHHHHHHHHhchhhcC
Q 044022           11 HTYGSCINNITYAAQMS-HNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL-----PRLKIASDIVNSLAYLHFG   84 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~-h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-----~~~~~~~~i~~~l~~lh~~   84 (241)
                      ....++..|.+..+.|. -+.|..++-+-..+.+..||+|++ |.||+|+..-...     +...++.|++.-+.++|  
T Consensus        65 S~APQLrdEYr~YKlL~g~~GIP~vYYFGqeG~~NiLVidLL-GPSLEDLFD~CgR~FSvKTV~miA~Qmi~rie~vH--  141 (449)
T KOG1165|consen   65 SEAPQLRDEYRTYKLLGGTEGIPQVYYFGQEGKYNILVIDLL-GPSLEDLFDLCGRRFSVKTVAMIAKQMITRIEYVH--  141 (449)
T ss_pred             CCcchHHHHHHHHHHHcCCCCCCceeeeccccchhhhhhhhh-CcCHHHHHHHhcCcccHHhHHHHHHHHHHHHHHHH--
Confidence            45677888999999995 489998888877788899999999 7899998754322     46778999999999999  


Q ss_pred             CCCCceeccCCCCCeeecCC-----CCeEEeeccCceecCCCCcc-----eeecccccCCCccCcccccccCCCcchhhH
Q 044022           85 FPRPIVLRNFKTQNILFNEE-----NVAKWFDFLLSISIPEGETH-----ITTDRVIGTRGYSAPEYISICVLNEKSNVF  154 (241)
Q Consensus        85 ~~~~ivh~dl~~~nil~~~~-----~~~~l~df~~~~~~~~~~~~-----~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~  154 (241)
                       ++.+|.|||||+|+||..-     ..+.++|||+++....+.+.     ....+..||..||+--.-.+...+.+.|+=
T Consensus       142 -~k~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~YrDp~TkqHIPYrE~KSLsGTARYMSINTHlGrEQSRRDDLE  220 (449)
T KOG1165|consen  142 -EKDLIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKEYRDPKTKQHIPYREHKSLSGTARYMSINTHLGREQSRRDDLE  220 (449)
T ss_pred             -hcceeecccCccceeecCCCCCCCceEEEEeccchhhhcCccccccCccccccccccceeeeEeeccccchhhhhhhHH
Confidence             9999999999999999743     46889999999876654332     223456699999999988888899999999


Q ss_pred             HHHHHHHHHHhcCccccc
Q 044022          155 SFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       155 s~G~~~~~~~~g~~p~~~  172 (241)
                      |+|=++.+++.|..||..
T Consensus       221 aLGHvFmYFLRGsLPWQG  238 (449)
T KOG1165|consen  221 ALGHVFMYFLRGSLPWQG  238 (449)
T ss_pred             HhhhhhhhhccCCCcccc
Confidence            999999999999999976

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.64  E-value=4e-16  Score=117.83  Aligned_cols=96  Identities=13%  Similarity=0.121  Sum_probs=73.9

Q ss_pred             HHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHh-hcCCCc---hHHHHHHHHHHHhchh-hcCCCCCcee
Q 044022           17 INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDC-IFGAPL---PRLKIASDIVNSLAYL-HFGFPRPIVL   91 (241)
Q Consensus        17 ~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~-l~~~~~---~~~~~~~~i~~~l~~l-h~~~~~~ivh   91 (241)
                      .+|++++.++.++++.....+.  ....++||||++++++... +.....   ....++.+++.+|.++ |   +.+++|
T Consensus        67 ~~E~~~l~~l~~~~v~~p~~~~--~~~~~iVmE~i~g~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~l~H---~~giiH  141 (190)
T cd05147          67 EKEMRNLKRLVTAGIPCPEPIL--LKSHVLVMEFIGDDGWAAPRLKDAPLSESKARELYLQVIQIMRILYQ---DCRLVH  141 (190)
T ss_pred             HHHHHHHHHHHHCCCCCCcEEE--ecCCEEEEEEeCCCCCcchhhhcCCCCHHHHHHHHHHHHHHHHHHHH---hCCccc
Confidence            4599999999888774433322  2234899999988777554 333222   4678899999999998 8   889999


Q ss_pred             ccCCCCCeeecCCCCeEEeeccCceec
Q 044022           92 RNFKTQNILFNEENVAKWFDFLLSISI  118 (241)
Q Consensus        92 ~dl~~~nil~~~~~~~~l~df~~~~~~  118 (241)
                      |||||+||+++ ++.++|+|||++...
T Consensus       142 rDlkP~NIli~-~~~v~LiDFG~a~~~  167 (190)
T cd05147         142 ADLSEYNLLYH-DGKLYIIDVSQSVEH  167 (190)
T ss_pred             CCCCHHHEEEE-CCcEEEEEccccccC
Confidence            99999999998 578999999998643

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.63  E-value=4.2e-16  Score=137.94  Aligned_cols=141  Identities=24%  Similarity=0.283  Sum_probs=103.7

Q ss_pred             HHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCC-------------cceeecccccCCCccCc
Q 044022           73 DIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGE-------------THITTDRVIGTRGYSAP  139 (241)
Q Consensus        73 ~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~-------------~~~~~~~~~~~~~~~aP  139 (241)
                      +++.++.|||   .-+|||||+||+|.++..-|.+|++|||+++......             .......++||+.|.||
T Consensus       151 dmvla~Eylh---~ygivhrdlkpdnllIT~mGhiKlTDfgLsk~GLms~atnl~eg~I~k~t~Ef~dKqvcgTPeyiaP  227 (1205)
T KOG0606|consen  151 DMVLAVEYLH---SYGIVHRDLKPDNLLITSMGHIKLTDFGLSKKGLMSLATNLKEGHIEKDTHEFQDKQVCGTPEYIAP  227 (1205)
T ss_pred             hhhHHhHhhc---cCCeecCCCCCCcceeeecccccccchhhhhhhhhhccchhhhcchHHHHHHhhhccccCCccccCh
Confidence            3478999999   9999999999999999999999999999986543211             11122346899999999


Q ss_pred             ccccccCCCcchhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHH
Q 044022          140 EYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLH  219 (241)
Q Consensus       140 E~~~~~~~~~~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (241)
                      |++....|...+|.|++|+|+|+++.|..||+....+         +...........+.-.+.            ....
T Consensus       228 eVilrqgygkpvdwwamGiIlyeFLVgcvpffGdtpe---------elfg~visd~i~wpE~de------------a~p~  286 (1205)
T KOG0606|consen  228 EVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPE---------ELFGQVISDDIEWPEEDE------------ALPP  286 (1205)
T ss_pred             hhhhhhccCCCccHHHHHHHHHHHheeeeeccCCCHH---------HHHhhhhhhhccccccCc------------CCCH
Confidence            9999999999999999999999999999999653221         222222221111111111            1124


Q ss_pred             HHHHHHHHhccCCCCCCC
Q 044022          220 ASAQLTLECVNNSPEDRP  237 (241)
Q Consensus       220 ~~~~l~~~cl~~~p~~Rp  237 (241)
                      +..+++.+.|+.+|..|-
T Consensus       287 Ea~dli~~LL~qnp~~Rl  304 (1205)
T KOG0606|consen  287 EAQDLIEQLLRQNPLCRL  304 (1205)
T ss_pred             HHHHHHHHHHHhChHhhc
Confidence            678899999999998874

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.62  E-value=2.5e-15  Score=113.69  Aligned_cols=99  Identities=12%  Similarity=0.149  Sum_probs=77.7

Q ss_pred             HHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHh-hcCCCc---hHHHHHHHHHHHhchhhcCCC-CCce
Q 044022           16 CINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDC-IFGAPL---PRLKIASDIVNSLAYLHFGFP-RPIV   90 (241)
Q Consensus        16 ~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~-l~~~~~---~~~~~~~~i~~~l~~lh~~~~-~~iv   90 (241)
                      +.+|.+.+.++.|+++.....+...  ..++||||++++++... +.....   ....++.+++.++.++|   . .+++
T Consensus        66 ~~~E~~~l~~l~~~~i~~p~~~~~~--~~~lVmE~~~g~~~~~~~l~~~~~~~~~~~~i~~~l~~~l~~lH---~~~giv  140 (190)
T cd05145          66 AEKEFRNLKRLYEAGVPVPEPILLK--KNVLVMEFIGDDGSPAPRLKDVPLEEEEAEELYEQVVEQMRRLY---QEAGLV  140 (190)
T ss_pred             HHHHHHHHHHHHhCCCCCceEEEec--CCEEEEEEecCCCchhhhhhhccCCHHHHHHHHHHHHHHHHHHH---HhCCEe
Confidence            4679999999999987544443332  24899999988755332 433322   56789999999999999   7 9999


Q ss_pred             eccCCCCCeeecCCCCeEEeeccCceecCC
Q 044022           91 LRNFKTQNILFNEENVAKWFDFLLSISIPE  120 (241)
Q Consensus        91 h~dl~~~nil~~~~~~~~l~df~~~~~~~~  120 (241)
                      ||||||+||+++ ++.++|+|||++.....
T Consensus       141 HrDlkP~NIll~-~~~~~liDFG~a~~~~~  169 (190)
T cd05145         141 HGDLSEYNILYH-DGKPYIIDVSQAVELDH  169 (190)
T ss_pred             cCCCChhhEEEE-CCCEEEEEcccceecCC
Confidence            999999999999 88999999999976543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=99.61  E-value=4.9e-16  Score=121.94  Aligned_cols=149  Identities=18%  Similarity=0.240  Sum_probs=112.4

Q ss_pred             HHHHHhcCCCcccceeeeeeeCC-----cceEEEEecCCCCHHHhhcCCCc--------hHHHHHHHHHHHhchhhcCCC
Q 044022           20 ITYAAQMSHNHILKRIGCCLQTP-----IPILVFQSVEYGTLRDCIFGAPL--------PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        20 ~~~l~~l~h~~iv~~~~~~~~~~-----~~~lv~e~~~~~sL~~~l~~~~~--------~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      +..|-++-|.|||+++.||.+.+     ...+++||++.|++.++|++...        ...+|+.||+.||.|||++ +
T Consensus       118 FdnllqlvHsnlvkfH~yw~d~K~~e~~rviFiteymssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal~yLhs~-~  196 (458)
T KOG1266|consen  118 FDNLLQLVHSNLVKFHKYWTDKKYEEKPRVIFITEYMSSGSLKQFLKRTKKNQKALFQKAWKKWCTQILSALSYLHSC-D  196 (458)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccceEEEEecccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhcc-C
Confidence            45566778999999999998644     46789999999999999976521        2357999999999999976 7


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeec--cCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHH
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDF--LLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df--~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~  164 (241)
                      ..++|++++.+.|++..++-+|++.-  ......-............+.++|.+||+-....-+.++|||+||....+|.
T Consensus       197 PpiihgnlTc~tifiq~ngLIkig~~ap~s~h~s~~~~~~~Ek~~~~~~~g~~a~~sg~~tn~~~a~dIy~fgmcAlema  276 (458)
T KOG1266|consen  197 PPIIHGNLTCDTIFIQHNGLIKIGSVAPDSTHPSVNSTREAEKSVNTSLPGFSAPESGTTTNTTGASDIYKFGMCALEMA  276 (458)
T ss_pred             CccccCCcchhheeecCCceEEecccCccccchhhhhhhHhhhhccccCCccccCCcCcccccccchhhhhhhHHHHHHH
Confidence            78999999999999999998887642  1111111111111112234567899999887777788999999999999999


Q ss_pred             hcCcc
Q 044022          165 AGRIH  169 (241)
Q Consensus       165 ~g~~p  169 (241)
                      .+..-
T Consensus       277 ilEiq  281 (458)
T KOG1266|consen  277 ILEIQ  281 (458)
T ss_pred             Hheec
Confidence            88653

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.61  E-value=1.6e-16  Score=138.40  Aligned_cols=205  Identities=18%  Similarity=0.190  Sum_probs=155.5

Q ss_pred             HHHHHHHHHhcC-CCcccceeeeeeeCCcceEEEEecCCCCHHHhh-cCCC-----chHHHHHHHHHHHhchhhcCCCCC
Q 044022           16 CINNITYAAQMS-HNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI-FGAP-----LPRLKIASDIVNSLAYLHFGFPRP   88 (241)
Q Consensus        16 ~~~e~~~l~~l~-h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l-~~~~-----~~~~~~~~~i~~~l~~lh~~~~~~   88 (241)
                      ...|..+.+.+. |+|++++++...+....++++++..++++...+ ....     ...-.+..|+..++.|+|.  ..+
T Consensus        67 i~~e~~~~~~~s~h~n~~~~~~~~~~~~~~~~~~~~s~g~~~f~~i~~~~~~~~~~~~~~~~~~ql~s~l~~~H~--~~~  144 (601)
T KOG0590|consen   67 IDTETDIQKKLSKHSNTVHMIEPSSSPRSYLLSLSYSDGGSLFSKISHPDSTGTSSSSASRYLPQLNSGLSYLHP--ENG  144 (601)
T ss_pred             cCccccccccccccccccccCCccCCCcccccccCcccccccccccccCCccCCCCcchhhhhhhhccCccccCc--ccc
Confidence            334777778886 999999999999999999999999999999988 4332     2467789999999999996  678


Q ss_pred             ceeccCCCCCeeecCCC-CeEEeeccCceecCC-CCcceeeccccc-CCCccCccccccc-CCCcchhhHHHHHHHHHHH
Q 044022           89 IVLRNFKTQNILFNEEN-VAKWFDFLLSISIPE-GETHITTDRVIG-TRGYSAPEYISIC-VLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        89 ivh~dl~~~nil~~~~~-~~~l~df~~~~~~~~-~~~~~~~~~~~~-~~~~~aPE~~~~~-~~~~~~Di~s~G~~~~~~~  164 (241)
                      +.|+|++|+|.+++..+ ..+++|||++..... ...........| ++.|.|||...+. ...+..|+||.|+++..++
T Consensus       145 ~~h~~ikP~n~~l~~s~~~l~~~df~~At~~~~~~g~~~~~~~~~g~s~~y~a~E~~~~~~~~~~~~d~~S~g~~l~~~~  224 (601)
T KOG0590|consen  145 VTHRDIKPSNSLLDESGSALKIADFGLATAYRNKNGAERSLKDRCGSSPPYGAPEHLSGKAYRGPSVDVWSLGIVLSAML  224 (601)
T ss_pred             cccCCCCCccchhccCCCcccCCCchhhccccccCCcceeeecccCCCCCCCCcccccchhhcCCCcccccccccccccc
Confidence            99999999999999999 999999999987766 444444555677 9999999999874 5568899999999999999


Q ss_pred             hcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          165 AGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       165 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +|..|+.......                 ..+..............+  ........+++..++..+|+.|.+.++
T Consensus       225 ~g~~p~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~k~l~~~~~~r~s~~~  282 (601)
T KOG0590|consen  225 TGELPWDFPSRKD-----------------GRYSSWKSNKGRFTQLPW--NSISDQAHDLLHKILKENPSNRLSIEE  282 (601)
T ss_pred             cCCCCcccccccc-----------------ccceeecccccccccCcc--ccCChhhhhcccccccCCchhcccccc
Confidence            9999986532221                 111111111100000000  112245678899999999999998764

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.60  E-value=4.9e-15  Score=113.93  Aligned_cols=100  Identities=16%  Similarity=0.179  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCchHHHHHHHHHHHhchhhcCCCCCceecc
Q 044022           14 GSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDIVNSLAYLHFGFPRPIVLRN   93 (241)
Q Consensus        14 ~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~i~~~l~~lh~~~~~~ivh~d   93 (241)
                      .++.+|++++..++|+++.....++......+++|||++|++|.+.+.........++.+++.++.++|   +.+++|+|
T Consensus        44 ~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~~~G~~L~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~D  120 (211)
T PRK14879         44 ERTRREARIMSRARKAGVNVPAVYFVDPENFIIVMEYIEGEPLKDLINSNGMEELELSREIGRLVGKLH---SAGIIHGD  120 (211)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCeEEEEeCCCCEEEEEEeCCcCHHHHHHhccHHHHHHHHHHHHHHHHHH---hCCcccCC
Confidence            467889999999999998877777777778899999999999999987654467788999999999999   99999999


Q ss_pred             CCCCCeeecCCCCeEEeeccCcee
Q 044022           94 FKTQNILFNEENVAKWFDFLLSIS  117 (241)
Q Consensus        94 l~~~nil~~~~~~~~l~df~~~~~  117 (241)
                      ++|.||+++ ++.++++|||.+..
T Consensus       121 l~p~Nil~~-~~~~~liDf~~a~~  143 (211)
T PRK14879        121 LTTSNMILS-GGKIYLIDFGLAEF  143 (211)
T ss_pred             CCcccEEEE-CCCEEEEECCcccC
Confidence            999999999 78899999998764

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.59  E-value=6.1e-15  Score=112.37  Aligned_cols=97  Identities=18%  Similarity=0.175  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCchHHHHHHHHHHHhchhhcCCCCCceecc
Q 044022           14 GSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDIVNSLAYLHFGFPRPIVLRN   93 (241)
Q Consensus        14 ~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~i~~~l~~lh~~~~~~ivh~d   93 (241)
                      .++.+|++++..++|+++.....++......++||||++|++|.+++.....   .++.+++.+|.+||   +.+++|+|
T Consensus        42 ~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~~~g~~l~~~~~~~~~---~~~~~i~~~l~~lH---~~gi~H~D  115 (199)
T TIGR03724        42 ERTRNEARLLSRARKAGVNTPVVYDVDPDNKTIVMEYIEGKPLKDVIEEGND---ELLREIGRLVGKLH---KAGIVHGD  115 (199)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEECCccHHHHHhhcHH---HHHHHHHHHHHHHH---HCCeecCC
Confidence            5677899999999988766555555566778999999999999998765432   78899999999999   99999999


Q ss_pred             CCCCCeeecCCCCeEEeeccCcee
Q 044022           94 FKTQNILFNEENVAKWFDFLLSIS  117 (241)
Q Consensus        94 l~~~nil~~~~~~~~l~df~~~~~  117 (241)
                      ++|.||+++ ++.++++|||.+..
T Consensus       116 l~~~Nil~~-~~~~~liDfg~a~~  138 (199)
T TIGR03724       116 LTTSNIIVR-DDKLYLIDFGLGKY  138 (199)
T ss_pred             CCcceEEEE-CCcEEEEECCCCcC
Confidence            999999999 88999999998754

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.58  E-value=9e-15  Score=127.31  Aligned_cols=97  Identities=13%  Similarity=0.133  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCchHHHHHHHHHHHhchhhcCCCCCceec
Q 044022           13 YGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDIVNSLAYLHFGFPRPIVLR   92 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~i~~~l~~lh~~~~~~ivh~   92 (241)
                      ..++.+|++++++++|++++....++......++||||+++++|.+++.    ....++.+++.++.+||   +.+++||
T Consensus       380 ~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~E~~~g~~L~~~l~----~~~~~~~~i~~~L~~lH---~~giiHr  452 (535)
T PRK09605        380 TERTRAEARLLSEARRAGVPTPVIYDVDPEEKTIVMEYIGGKDLKDVLE----GNPELVRKVGEIVAKLH---KAGIVHG  452 (535)
T ss_pred             HHHHHHHHHHHHhhcccCCCeeEEEEEeCCCCEEEEEecCCCcHHHHHH----HHHHHHHHHHHHHHHHH---hCCCccC
Confidence            3568899999999999999988777777777899999999999999886    35678999999999999   9999999


Q ss_pred             cCCCCCeeecCCCCeEEeeccCcee
Q 044022           93 NFKTQNILFNEENVAKWFDFLLSIS  117 (241)
Q Consensus        93 dl~~~nil~~~~~~~~l~df~~~~~  117 (241)
                      |+||+||++ .++.++|+|||+++.
T Consensus       453 Dlkp~NILl-~~~~~~liDFGla~~  476 (535)
T PRK09605        453 DLTTSNFIV-RDDRLYLIDFGLGKY  476 (535)
T ss_pred             CCChHHEEE-ECCcEEEEeCccccc
Confidence            999999999 678899999999865

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.55  E-value=2.8e-14  Score=111.56  Aligned_cols=102  Identities=16%  Similarity=0.145  Sum_probs=81.9

Q ss_pred             cHHHHHHHHHHHHhcCCCcc--cceeeeeeeCC----cceEEEEecCC-CCHHHhhcCCCchHHHHHHHHHHHhchhhcC
Q 044022           12 TYGSCINNITYAAQMSHNHI--LKRIGCCLQTP----IPILVFQSVEY-GTLRDCIFGAPLPRLKIASDIVNSLAYLHFG   84 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~i--v~~~~~~~~~~----~~~lv~e~~~~-~sL~~~l~~~~~~~~~~~~~i~~~l~~lh~~   84 (241)
                      ...++.+|++++.+|+|+++  +..+++.....    ..++|+|+++| .+|.+++...... ...+.+++.++.+||  
T Consensus        83 ~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~~~~~~~~~lV~e~l~G~~~L~~~l~~~~l~-~~~~~~i~~~l~~lH--  159 (239)
T PRK01723         83 ERTRAFAEFRLLAQLYEAGLPVPRPIAARVVRHGLFYRADILIERIEGARDLVALLQEAPLS-EEQWQAIGQLIARFH--  159 (239)
T ss_pred             hhhHHHHHHHHHHHHHhCCCCCceeEeeeeeecCcceeeeEEEEecCCCCCHHHHHhcCCCC-HHHHHHHHHHHHHHH--
Confidence            34668899999999998775  56666654332    23599999997 6999888665332 334678999999999  


Q ss_pred             CCCCceeccCCCCCeeecCCCCeEEeeccCcee
Q 044022           85 FPRPIVLRNFKTQNILFNEENVAKWFDFLLSIS  117 (241)
Q Consensus        85 ~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~  117 (241)
                       +.||+|+||||.|||++.++.++|+|||.+..
T Consensus       160 -~~GI~HrDlkp~NILv~~~~~v~LIDfg~~~~  191 (239)
T PRK01723        160 -DAGVYHADLNAHNILLDPDGKFWLIDFDRGEL  191 (239)
T ss_pred             -HCCCCCCCCCchhEEEcCCCCEEEEECCCccc
Confidence             99999999999999999999999999998754

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=99.52  E-value=6.8e-14  Score=119.22  Aligned_cols=146  Identities=16%  Similarity=0.129  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCch-HHHHHHHHHHHhchhhcCCCCCcee
Q 044022           13 YGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLP-RLKIASDIVNSLAYLHFGFPRPIVL   91 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~-~~~~~~~i~~~l~~lh~~~~~~ivh   91 (241)
                      .+...+.++-|+.+|||||+++++.+..++..|+|+|-+  ..|..+++....- .---+.||+.||.|||.  +.+++|
T Consensus        53 ~~~~~~A~k~lKtlRHP~Il~yL~t~e~~~~~ylvTErV--~Pl~~~lk~l~~~~v~~Gl~qIl~AL~FL~~--d~~lvH  128 (690)
T KOG1243|consen   53 TELAKRAVKRLKTLRHPNILSYLDTTEEEGTLYLVTERV--RPLETVLKELGKEEVCLGLFQILAALSFLND--DCNLVH  128 (690)
T ss_pred             hHHHHHHHHHhhhccCchhhhhhhhhcccCceEEEeecc--ccHHHHHHHhHHHHHHHHHHHHHHHHHHHhc--cCCeee
Confidence            566778899999999999999999999999999999998  4788777765432 22347899999999986  778999


Q ss_pred             ccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhc
Q 044022           92 RNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        92 ~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      +++.-..++++..|..||++|.++........  .......--.|..|+.+....  -..|.|-||+++++++.|
T Consensus       129 gNv~~~SVfVn~~GeWkLggle~v~~~~~~~~--~~~~~~~~~s~~~P~~~~~s~--~s~D~~~Lg~li~el~ng  199 (690)
T KOG1243|consen  129 GNVCKDSVFVNESGEWKLGGLELVSKASGFNA--PAKSLYLIESFDDPEEIDPSE--WSIDSWGLGCLIEELFNG  199 (690)
T ss_pred             ccEeeeeEEEcCCCcEEEeeeEEEeccccCCc--ccccchhhhcccChhhcCccc--cchhhhhHHHHHHHHhCc
Confidence            99999999999999999999988755433221  011111122344555433221  235999999999999999

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.51  E-value=4.1e-14  Score=126.85  Aligned_cols=150  Identities=17%  Similarity=0.151  Sum_probs=118.2

Q ss_pred             HHHHHHHHHhcC---CCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCCCC
Q 044022           16 CINNITYAAQMS---HNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFPRP   88 (241)
Q Consensus        16 ~~~e~~~l~~l~---h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~~~   88 (241)
                      |+--.+++.+|+   -+.|.++.....-.+-.++|+||.+.|||.++++....    -.+.++.+++.-+..||   ..+
T Consensus       738 fYI~~q~~~RLk~~~~~~~~~~~~a~~~~~~S~lv~ey~~~Gtlld~~N~~~~m~e~lv~~~~~qml~ive~lH---~~~  814 (974)
T KOG1166|consen  738 FYICLQVMERLKPQMLPSIMHISSAHVFQNASVLVSEYSPYGTLLDLINTNKVMDEYLVMFFSCQMLRIVEHLH---AMG  814 (974)
T ss_pred             eeehHHHHHhhchhhhcchHHHHHHHccCCcceeeeeccccccHHHhhccCCCCCchhhhHHHHHHHHHHHHHH---hcc
Confidence            333445566665   23555666666667777999999999999999986543    35778899999999999   999


Q ss_pred             ceeccCCCCCeeecC-------CCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHH
Q 044022           89 IVLRNFKTQNILFNE-------ENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLF  161 (241)
Q Consensus        89 ivh~dl~~~nil~~~-------~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~  161 (241)
                      |||+||||+|+|+..       ...++|+|||.+.-+.--.....-....+|-.+-++|...+++|+...|.|.|+-+++
T Consensus       815 IIHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~siDm~lfp~~~~F~~~~~td~f~C~EM~~grpWtYq~DyfGlAa~~h  894 (974)
T KOG1166|consen  815 IIHGDIKPDNFLLRREICADSDSKGLYLIDFGRSIDMKLFPDGTKFKAVWHTDLFDCIEMREGRPWTYQIDYFGLAATVH  894 (974)
T ss_pred             eecccCCcceeEeecccCCCCcccceEEEecccceeeeEcCCCcEEeeeeccccchhHHHhcCCCCchhhhhHHHHHHHH
Confidence            999999999999943       3468999999997554322222334457788899999999999999999999999999


Q ss_pred             HHHhcCc
Q 044022          162 ELLAGRI  168 (241)
Q Consensus       162 ~~~~g~~  168 (241)
                      .|+.|+.
T Consensus       895 ~mLFG~y  901 (974)
T KOG1166|consen  895 VMLFGKY  901 (974)
T ss_pred             HHHHHHH
Confidence            9999874

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.46  E-value=2.4e-13  Score=98.42  Aligned_cols=101  Identities=15%  Similarity=0.115  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHhcCC--CcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCchHHHHHHHHHHHhchhhcCCCCCce
Q 044022           13 YGSCINNITYAAQMSH--NHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDIVNSLAYLHFGFPRPIV   90 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h--~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~i~~~l~~lh~~~~~~iv   90 (241)
                      ...+.+|+.+++.++|  .++++++++....+..++++||++++++..+   .......++.+++.+++.+|.....+++
T Consensus        35 ~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~~~~v~e~~~g~~~~~~---~~~~~~~~~~~~~~~l~~lh~~~~~~i~  111 (155)
T cd05120          35 GADREREVAILQLLARKGLPVPKVLASGESDGWSYLLMEWIEGETLDEV---SEEEKEDIAEQLAELLAKLHQLPLLVLC  111 (155)
T ss_pred             hhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCccEEEEEecCCeecccC---CHHHHHHHHHHHHHHHHHHhCCCceEEE
Confidence            4678999999999976  5888999988887889999999998877655   2234567788999999999943335799


Q ss_pred             eccCCCCCeeecCCCCeEEeeccCce
Q 044022           91 LRNFKTQNILFNEENVAKWFDFLLSI  116 (241)
Q Consensus        91 h~dl~~~nil~~~~~~~~l~df~~~~  116 (241)
                      |+|++|.|++++..+.+++.||+.+.
T Consensus       112 H~Dl~~~Nil~~~~~~~~l~Df~~~~  137 (155)
T cd05120         112 HGDLHPGNILVDDGKILGIIDWEYAG  137 (155)
T ss_pred             ecCCCcceEEEECCcEEEEEeccccc
Confidence            99999999999998999999999775

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>smart00090 RIO RIO-like kinase

Probab=99.45  E-value=3.2e-13  Score=105.42  Aligned_cols=96  Identities=15%  Similarity=0.161  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHhcCCCc--ccceeeeeeeCCcceEEEEecCCCCHHHhhc-CCCc---hHHHHHHHHHHHhchhhcCCCCC
Q 044022           15 SCINNITYAAQMSHNH--ILKRIGCCLQTPIPILVFQSVEYGTLRDCIF-GAPL---PRLKIASDIVNSLAYLHFGFPRP   88 (241)
Q Consensus        15 ~~~~e~~~l~~l~h~~--iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~-~~~~---~~~~~~~~i~~~l~~lh~~~~~~   88 (241)
                      .+.+|++++.++.+..  +.+++++    ...++||||+.+++|..... ....   ....++.+++.++.+||   ..+
T Consensus        96 ~~~~E~~~L~~L~~~~i~~p~~~~~----~~~~lV~E~~~g~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~g  168 (237)
T smart00090       96 WAEKEFRNLQRLYEAGVPVPKPIAW----RRNVLVMEFIGGDGLPAPRLKDVEPEEEEEFELYDDILEEMRKLY---KEG  168 (237)
T ss_pred             HHHHHHHHHHHHHhcCCCCCeeeEe----cCceEEEEEecCCcccccccccCCcchHHHHHHHHHHHHHHHHHH---hcC
Confidence            4678999999997532  3344432    23589999999888876542 2222   24678999999999999   899


Q ss_pred             -ceeccCCCCCeeecCCCCeEEeeccCceec
Q 044022           89 -IVLRNFKTQNILFNEENVAKWFDFLLSISI  118 (241)
Q Consensus        89 -ivh~dl~~~nil~~~~~~~~l~df~~~~~~  118 (241)
                       ++|+||||+||+++ ++.++++|||.+...
T Consensus       169 ~iiH~Dikp~NIli~-~~~i~LiDFg~a~~~  198 (237)
T smart00090      169 ELVHGDLSEYNILVH-DGKVVIIDVSQSVEL  198 (237)
T ss_pred             CEEeCCCChhhEEEE-CCCEEEEEChhhhcc
Confidence             99999999999999 889999999988643

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.44  E-value=4.7e-13  Score=101.94  Aligned_cols=97  Identities=11%  Similarity=0.100  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHhcCCCc--ccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCchHHHHHHHHHHHhchhhcCCCCCceec
Q 044022           15 SCINNITYAAQMSHNH--ILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDIVNSLAYLHFGFPRPIVLR   92 (241)
Q Consensus        15 ~~~~e~~~l~~l~h~~--iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~i~~~l~~lh~~~~~~ivh~   92 (241)
                      .+.+|+.++.++.|++  +.+.++    ....++||||+++++|......  .....++.+++.++.++|   ..+++|+
T Consensus        79 ~~~~E~~~l~~l~~~~i~v~~~~~----~~~~~lv~e~~~g~~L~~~~~~--~~~~~~~~~i~~~l~~lh---~~gi~H~  149 (198)
T cd05144          79 AAQKEFAALKALYEEGFPVPKPID----WNRHAVVMEYIDGVELYRVRVL--EDPEEVLDEILEEIVKAY---KHGIIHG  149 (198)
T ss_pred             HHHHHHHHHHHHHHcCCCCCceee----cCCceEEEEEeCCcchhhcccc--ccHHHHHHHHHHHHHHHH---HCCCCcC
Confidence            4678999999997774  444443    2345899999999999876542  345678889999999999   8999999


Q ss_pred             cCCCCCeeecCCCCeEEeeccCceecCC
Q 044022           93 NFKTQNILFNEENVAKWFDFLLSISIPE  120 (241)
Q Consensus        93 dl~~~nil~~~~~~~~l~df~~~~~~~~  120 (241)
                      ||+|.||+++.++.++|+|||.+.....
T Consensus       150 Dl~p~Nill~~~~~~~liDfg~~~~~~~  177 (198)
T cd05144         150 DLSEFNILVDDDEKIYIIDWPQMVSTDH  177 (198)
T ss_pred             CCCcccEEEcCCCcEEEEECCccccCCC
Confidence            9999999999999999999999865443

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.24  E-value=1.8e-11  Score=92.27  Aligned_cols=91  Identities=15%  Similarity=0.166  Sum_probs=68.0

Q ss_pred             HHHHHHHhcCCCc--ccceeeeeeeCCcceEEEEecCCC-----CHHHhhcCCCchHHHHHHHHHHHhchhhcCCC-CCc
Q 044022           18 NNITYAAQMSHNH--ILKRIGCCLQTPIPILVFQSVEYG-----TLRDCIFGAPLPRLKIASDIVNSLAYLHFGFP-RPI   89 (241)
Q Consensus        18 ~e~~~l~~l~h~~--iv~~~~~~~~~~~~~lv~e~~~~~-----sL~~~l~~~~~~~~~~~~~i~~~l~~lh~~~~-~~i   89 (241)
                      .|.+.+.++.+..  +.+.++.    ...++||||++++     +|.+....  .....++.+++.++.++|   . .++
T Consensus        66 ~e~~~l~~l~~~~~~~~~~~~~----~~~~lv~e~~~g~~~~~~~l~~~~~~--~~~~~~~~~~~~~l~~lh---~~~~i  136 (187)
T cd05119          66 KEFRNLKRLYEAGVPVPKPIDL----NRHVLVMEFIGGDGIPAPRLKDVRLL--EDPEELYDQILELMRKLY---REAGL  136 (187)
T ss_pred             HHHHHHHHHHHcCCCCCceEec----CCCEEEEEEeCCCCccChhhhhhhhc--ccHHHHHHHHHHHHHHHh---hccCc
Confidence            4666666664432  3344433    2468999999984     34333221  456788999999999999   7 999


Q ss_pred             eeccCCCCCeeecCCCCeEEeeccCceec
Q 044022           90 VLRNFKTQNILFNEENVAKWFDFLLSISI  118 (241)
Q Consensus        90 vh~dl~~~nil~~~~~~~~l~df~~~~~~  118 (241)
                      +|+||+|+||+++ ++.++++|||.+...
T Consensus       137 vH~Dl~p~Nili~-~~~~~liDfg~a~~~  164 (187)
T cd05119         137 VHGDLSEYNILVD-DGKVYIIDVPQAVEI  164 (187)
T ss_pred             CcCCCChhhEEEE-CCcEEEEECcccccc
Confidence            9999999999999 899999999998644

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>cd05151 ChoK Choline Kinase (ChoK)

Probab=99.18  E-value=8.5e-11  Score=87.08  Aligned_cols=93  Identities=15%  Similarity=0.067  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHhcCCCccc-ceeeeeeeCCcceEEEEecCCCCHHHhhcCCCchHHHHHHHHHHHhchhhcCCCCC----
Q 044022           14 GSCINNITYAAQMSHNHIL-KRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDIVNSLAYLHFGFPRP----   88 (241)
Q Consensus        14 ~~~~~e~~~l~~l~h~~iv-~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~i~~~l~~lh~~~~~~----   88 (241)
                      ..+.+|+.+++.+.+.+++ +++.+.  ....++||||++|.++.+.    .......+.+++.+++.||   ..+    
T Consensus        37 ~~~~~E~~~l~~l~~~~~~P~~~~~~--~~~~~lv~e~i~G~~l~~~----~~~~~~~~~~l~~~l~~LH---~~~~~~~  107 (170)
T cd05151          37 INRENEAENSKLAAEAGIGPKLYYFD--PETGVLITEFIEGSELLTE----DFSDPENLEKIAKLLKKLH---SSPLPDL  107 (170)
T ss_pred             cCHHHHHHHHHHHHHhCCCCceEEEe--CCCCeEEEEecCCCccccc----cccCHHHHHHHHHHHHHHh---CCCCCCc
Confidence            3567899999999665554 445443  3345899999999887653    1222346678999999999   666    


Q ss_pred             -ceeccCCCCCeeecCCCCeEEeeccCce
Q 044022           89 -IVLRNFKTQNILFNEENVAKWFDFLLSI  116 (241)
Q Consensus        89 -ivh~dl~~~nil~~~~~~~~l~df~~~~  116 (241)
                       ++|+|++|.||+++ ++.++++||+.+.
T Consensus       108 ~~~HgD~~~~Nil~~-~~~~~liDf~~a~  135 (170)
T cd05151         108 VPCHNDLLPGNFLLD-DGRLWLIDWEYAG  135 (170)
T ss_pred             eeecCCCCcCcEEEE-CCeEEEEeccccc
Confidence             59999999999999 6789999998774

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.18  E-value=1.7e-10  Score=84.46  Aligned_cols=99  Identities=18%  Similarity=0.185  Sum_probs=79.8

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCchHHHHHHHHHHHhchhhcCCCCCcee
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDIVNSLAYLHFGFPRPIVL   91 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~i~~~l~~lh~~~~~~ivh   91 (241)
                      ...+-.+|++++.+++--.+..-.-+..+.+...|+|||.+|..|.+.+...   ...++..+=.-+.-||   ..+|+|
T Consensus        42 rr~Rt~~Earil~~a~~~GV~~P~v~dvD~~~~~I~me~I~G~~lkd~l~~~---~~~~~r~vG~~vg~lH---~~givH  115 (204)
T COG3642          42 RRERTRREARILAKAREAGVPVPIVYDVDPDNGLIVMEYIEGELLKDALEEA---RPDLLREVGRLVGKLH---KAGIVH  115 (204)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCEEEEEEeCChhHHHHHHhc---chHHHHHHHHHHHHHH---hcCeec
Confidence            3456778999999987655544444455677788999999999999988876   3566777777888899   999999


Q ss_pred             ccCCCCCeeecCCCCeEEeeccCcee
Q 044022           92 RNFKTQNILFNEENVAKWFDFLLSIS  117 (241)
Q Consensus        92 ~dl~~~nil~~~~~~~~l~df~~~~~  117 (241)
                      +||+++|+.+...+ +.++|||++..
T Consensus       116 GDLTtsNiIl~~~~-i~~IDfGLg~~  140 (204)
T COG3642         116 GDLTTSNIILSGGR-IYFIDFGLGEF  140 (204)
T ss_pred             CCCccceEEEeCCc-EEEEECCcccc
Confidence            99999999998766 89999999863

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.16  E-value=6.4e-11  Score=100.06  Aligned_cols=149  Identities=20%  Similarity=0.249  Sum_probs=117.5

Q ss_pred             HHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc-----hHHHHHHHHHH----HhchhhcCCC
Q 044022           17 INNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL-----PRLKIASDIVN----SLAYLHFGFP   86 (241)
Q Consensus        17 ~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-----~~~~~~~~i~~----~l~~lh~~~~   86 (241)
                      ++|+..-+.+ .|+|.|+.+..+...+..++-+|++. .+|..+......     .......+...    |+..+|   .
T Consensus       165 ~~~~~s~~~i~~~~~~v~~~~~~e~~~~lfiqtE~~~-~sl~~~~~~~~~~~p~~~l~~~~~~~~~~~~~al~~~h---s  240 (524)
T KOG0601|consen  165 LREFLSHHKIDSHENPVRDSPAWEGSGILFIQTELCG-ESLQSYCHTPCNFLPDNLLWNSLRDWLSRDVTALSHLH---S  240 (524)
T ss_pred             cchhhcccccCccccccccCcccccCCcceeeecccc-chhHHhhhcccccCCchhhhhHHhhhhhcccccccccC---C
Confidence            4566666666 58999999999999999999999995 788877655422     34556666667    999999   9


Q ss_pred             CCceeccCCCCCeeecCC-CCeEEeeccCceecCCCCccee---ecccccCCCccCcccccccCCCcchhhHHHHHHHHH
Q 044022           87 RPIVLRNFKTQNILFNEE-NVAKWFDFLLSISIPEGETHIT---TDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFE  162 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~-~~~~l~df~~~~~~~~~~~~~~---~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~  162 (241)
                      ..++|-|++|.||++..+ ...+++|||....+........   .-+..+...|++||+.. ..++..+|++++|.++.+
T Consensus       241 ~~~~~~~~kp~~i~~~~~~~s~~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~-~l~~~~~di~sl~ev~l~  319 (524)
T KOG0601|consen  241 NNIVHDDLKPANIFTTSDWTSCKLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLN-GLATFASDIFSLGEVILE  319 (524)
T ss_pred             CcccccccchhheecccccceeecCCcceeEEccCCccccceeeeecCCCCceEeChhhhc-cccchHhhhcchhhhhHh
Confidence            999999999999999999 8899999999887765432211   11225677899999988 456889999999999999


Q ss_pred             HHhcCccc
Q 044022          163 LLAGRIHI  170 (241)
Q Consensus       163 ~~~g~~p~  170 (241)
                      ...+..+.
T Consensus       320 ~~l~~~~~  327 (524)
T KOG0601|consen  320 AILGSHLP  327 (524)
T ss_pred             hHhhcccc
Confidence            99886553

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.15  E-value=1.6e-11  Score=109.49  Aligned_cols=189  Identities=20%  Similarity=0.187  Sum_probs=133.1

Q ss_pred             CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeec
Q 044022           27 SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFN  102 (241)
Q Consensus        27 ~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~  102 (241)
                      ++|-++...-.+......+++++|+.+++|...+++.+.    .....+..+..++.+||   ...++|+|++|.|++..
T Consensus       862 ~~P~v~~~~~s~~~rsP~~L~~~~~~~~~~~Skl~~~~~~saepaRs~i~~~vqs~e~L~---s~~r~h~~~~p~~~l~~  938 (1205)
T KOG0606|consen  862 RSPAVVRSFPSFPCRSPLPLVGHYLNGGDLPSKLHNSGCLSAEPARSPILERVQSLESLH---SSLRKHRDLKPDSLLIA  938 (1205)
T ss_pred             CCCceecccCCCCCCCCcchhhHHhccCCchhhhhcCCCcccccccchhHHHHhhhhccc---cchhhcccccccchhhc
Confidence            345555444445556678999999999999998877642    33456677888999999   77799999999999999


Q ss_pred             CCCCeEEeeccCceecC------CC-------------------Ccc----eeecccccCCCccCcccccccCCCcchhh
Q 044022          103 EENVAKWFDFLLSISIP------EG-------------------ETH----ITTDRVIGTRGYSAPEYISICVLNEKSNV  153 (241)
Q Consensus       103 ~~~~~~l~df~~~~~~~------~~-------------------~~~----~~~~~~~~~~~~~aPE~~~~~~~~~~~Di  153 (241)
                      .++..++++|+......      ..                   ...    .......+++.|.+||...+......+|.
T Consensus       939 ~~gh~~l~~~~t~~~vg~~~p~~~~sg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~t~~~laPe~~lg~~hgs~ad~ 1018 (1205)
T KOG0606|consen  939 YDGHRPLTDFGTLSKVGLIPPTTDLSGPSSSGTPRRLSRSERRPQLSADEARRKHAVVGTPDYLAPEILLGRRHGSAADW 1018 (1205)
T ss_pred             ccCCcccCccccccccccccCcCCcccccccCccccccccccccccccchhhccccccCCCcccCCcccccccCCCcchh
Confidence            99999999997322111      00                   000    11234568899999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCch-hHHHHHHHHHHHHHHhccCC
Q 044022          154 FSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCI-EKEQQLHASAQLTLECVNNS  232 (241)
Q Consensus       154 ~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~cl~~~  232 (241)
                      |++|+++++.++|.+||.+.....         ...+.             ...+.+.. .....+....+++...+..+
T Consensus      1019 ~~~g~~l~e~l~g~pp~na~tpq~---------~f~ni-------------~~~~~~~p~g~~~~s~~aq~~~~~ll~~~ 1076 (1205)
T KOG0606|consen 1019 WSSGVCLFEVLTGIPPFNAETPQQ---------IFENI-------------LNRDIPWPEGPEEGSYEAQDLINRLLTEE 1076 (1205)
T ss_pred             hhhhhhhhhhhcCCCCCCCcchhh---------hhhcc-------------ccCCCCCCCCccccChhhhhhhhhhhccC
Confidence            999999999999999997633221         01111             11111110 01133356788999999999


Q ss_pred             CCCCCCCC
Q 044022          233 PEDRPTMV  240 (241)
Q Consensus       233 p~~Rpt~~  240 (241)
                      |.+|..+.
T Consensus      1077 ~~qr~~a~ 1084 (1205)
T KOG0606|consen 1077 PTQRLGAK 1084 (1205)
T ss_pred             chhccCcc
Confidence            99998763

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=99.06  E-value=6.9e-10  Score=94.19  Aligned_cols=103  Identities=14%  Similarity=0.100  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHhcC----CCcccceeeeee-eCCcceEEEEecCCCCHHHhhcCC--CchHHHHHHHHHH-HhchhhcCCC
Q 044022           15 SCINNITYAAQMS----HNHILKRIGCCL-QTPIPILVFQSVEYGTLRDCIFGA--PLPRLKIASDIVN-SLAYLHFGFP   86 (241)
Q Consensus        15 ~~~~e~~~l~~l~----h~~iv~~~~~~~-~~~~~~lv~e~~~~~sL~~~l~~~--~~~~~~~~~~i~~-~l~~lh~~~~   86 (241)
                      +|.+|++.+.+++    |.+-+.+-..+. .....++||||++|++|.+.....  ......++..++. .+..+|   .
T Consensus       199 df~~Ea~n~~~~~~~~~~~~~v~vP~v~~~~~~~~vLvmE~i~G~~L~~~~~~~~~~~~~~~ia~~~~~~~l~ql~---~  275 (437)
T TIGR01982       199 DLRREAANASELGENFKNDPGVYVPEVYWDRTSERVLTMEWIDGIPLSDIAALDEAGLDRKALAENLARSFLNQVL---R  275 (437)
T ss_pred             CHHHHHHHHHHHHHhcCCCCCEEeCCEehhhcCCceEEEEeECCcccccHHHHHhcCCCHHHHHHHHHHHHHHHHH---h
Confidence            4777888777773    333333323222 234569999999999998876432  2244556666665 467788   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCC
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPE  120 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~  120 (241)
                      .|++|+|++|.||+++.++.++++|||.+...+.
T Consensus       276 ~g~~H~D~hPgNilv~~~g~i~liDfG~~~~l~~  309 (437)
T TIGR01982       276 DGFFHADLHPGNIFVLKDGKIIALDFGIVGRLSE  309 (437)
T ss_pred             CCceeCCCCcccEEECCCCcEEEEeCCCeeECCH
Confidence            9999999999999999999999999999977653

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=99.03  E-value=1.8e-09  Score=81.36  Aligned_cols=96  Identities=10%  Similarity=0.085  Sum_probs=70.3

Q ss_pred             HHHHHHHHHhcCC--CcccceeeeeeeCCcceEEEEecCCCCHHH-hhcCCC---chHHHHHHHHHHHhchh-hcCCCCC
Q 044022           16 CINNITYAAQMSH--NHILKRIGCCLQTPIPILVFQSVEYGTLRD-CIFGAP---LPRLKIASDIVNSLAYL-HFGFPRP   88 (241)
Q Consensus        16 ~~~e~~~l~~l~h--~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~-~l~~~~---~~~~~~~~~i~~~l~~l-h~~~~~~   88 (241)
                      ..+|++.|+++..  -++...+++    ...++||||+.++.+.. .++...   .....+..+++.++..+ |   ..+
T Consensus        73 a~kE~r~L~rl~~~Gv~vP~pi~~----~~~~lvME~Ig~~~~~~~~Lkd~~~~~~~~~~i~~~i~~~l~~l~H---~~g  145 (197)
T cd05146          73 AEKEMHNLKRMQKAGIPCPEVVVL----KKHVLVMSFIGDDQVPAPKLKDAKLNDEEMKNAYYQVLSMMKQLYK---ECN  145 (197)
T ss_pred             HHHHHHHHHHHHHcCCCCCeEEEe----cCCEEEEEEcCCCCccchhhhccccCHHHHHHHHHHHHHHHHHHHH---hCC
Confidence            3489999999954  355566654    45689999997543321 222211   13456678999999988 8   889


Q ss_pred             ceeccCCCCCeeecCCCCeEEeeccCceecC
Q 044022           89 IVLRNFKTQNILFNEENVAKWFDFLLSISIP  119 (241)
Q Consensus        89 ivh~dl~~~nil~~~~~~~~l~df~~~~~~~  119 (241)
                      ++|+||++.||++. ++.+.++|||.+....
T Consensus       146 lVHGDLs~~NIL~~-~~~v~iIDF~qav~~~  175 (197)
T cd05146         146 LVHADLSEYNMLWH-DGKVWFIDVSQSVEPT  175 (197)
T ss_pred             eecCCCCHHHEEEE-CCcEEEEECCCceeCC
Confidence            99999999999997 4679999999887654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.96  E-value=3.7e-09  Score=77.45  Aligned_cols=103  Identities=19%  Similarity=0.151  Sum_probs=80.0

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCC-CCHHHhhcCCC-----ch-HHHHHHHHHHHhchhhcC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEY-GTLRDCIFGAP-----LP-RLKIASDIVNSLAYLHFG   84 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-~sL~~~l~~~~-----~~-~~~~~~~i~~~l~~lh~~   84 (241)
                      ...+-.+|+++|.+++--.|.--.-++.+....+++|||++| .++.+++....     .. ...++..|-..+.-||  
T Consensus        53 tr~Rt~~Ear~l~k~~~~GI~~P~l~~~D~~~~~i~ME~~~g~~~vk~~i~~~~~~~~~d~~~~~~~~~iG~~igklH--  130 (229)
T KOG3087|consen   53 TRKRTKQEARLLAKCRALGIPAPRLIFIDTYGGQIYMEFIDGASTVKDFILSTMEDESEDEGLAELARRIGELIGKLH--  130 (229)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCceEEEEecCCCeEEEEeccchhHHHHHHHHHccCcccchhHHHHHHHHHHHHHHhh--
Confidence            566788999999998765555444455566677899999975 48888876541     12 3578888889999999  


Q ss_pred             CCCCceeccCCCCCeeecCCC---CeEEeeccCcee
Q 044022           85 FPRPIVLRNFKTQNILFNEEN---VAKWFDFLLSIS  117 (241)
Q Consensus        85 ~~~~ivh~dl~~~nil~~~~~---~~~l~df~~~~~  117 (241)
                       ..+++|+||+++||++..++   .+.++|||++..
T Consensus       131 -~ndiiHGDLTTSNill~~~~~~~~~~lIdfgls~~  165 (229)
T KOG3087|consen  131 -DNDIIHGDLTTSNILLRSDGNQITPILIDFGLSSV  165 (229)
T ss_pred             -hCCeecccccccceEEecCCCcCceEEEeecchhc
Confidence             99999999999999997665   347899998854

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.94  E-value=7.3e-09  Score=77.67  Aligned_cols=100  Identities=14%  Similarity=0.127  Sum_probs=67.1

Q ss_pred             cHHHHHHHHHHHHhcCCC--cccceeeeeeeCCcceEEEEecC--CCCHHHhhcCC--CchHHHHHHHHHHHhch-hhcC
Q 044022           12 TYGSCINNITYAAQMSHN--HILKRIGCCLQTPIPILVFQSVE--YGTLRDCIFGA--PLPRLKIASDIVNSLAY-LHFG   84 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~--~iv~~~~~~~~~~~~~lv~e~~~--~~sL~~~l~~~--~~~~~~~~~~i~~~l~~-lh~~   84 (241)
                      ......+|.+.|.++..-  ++.+.+++  .  ..++||||+.  |..+..+....  ......++.+++..+.. +|  
T Consensus        51 ~~~~~~~E~~~L~~l~~~Gv~vP~p~~~--~--~~~ivME~I~~~G~~~~~l~~~~~~~~~~~~~~~~il~~~~~~~~--  124 (188)
T PF01163_consen   51 IREWAKKEFRNLKRLYEAGVPVPKPYDY--N--RNVIVMEYIGEDGVPLPRLKDVDLSPEEPKELLEEILEEIIKMLH--  124 (188)
T ss_dssp             HHHHHHHHHHHHHHCCCTT-SS--EEEE--E--TTEEEEE--EETTEEGGCHHHCGGGGSTHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHHCCccCCcEEEE--e--CCEEEEEecCCCccchhhHHhccccchhHHHHHHHHHHHHHHHHH--
Confidence            345577899999999765  45566544  2  3589999998  65554433332  23455677777774444 68  


Q ss_pred             CCCCceeccCCCCCeeecCCCCeEEeeccCceecC
Q 044022           85 FPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIP  119 (241)
Q Consensus        85 ~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~  119 (241)
                       ..|++|+|+++.||+++.+ .+.++|||.+....
T Consensus       125 -~~givHGDLs~~NIlv~~~-~~~iIDf~qav~~~  157 (188)
T PF01163_consen  125 -KAGIVHGDLSEYNILVDDG-KVYIIDFGQAVDSS  157 (188)
T ss_dssp             -CTTEEESS-STTSEEEETT-CEEE--GTTEEETT
T ss_pred             -hcCceecCCChhhEEeecc-eEEEEecCcceecC
Confidence             8999999999999999987 89999999887543

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=98.92  E-value=7e-09  Score=82.25  Aligned_cols=99  Identities=9%  Similarity=0.080  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHhcCCCcc--cceeeeeee-----CCcceEEEEecCCC-CHHHhhcCC---Cc---hHHHHHHHHHHHhch
Q 044022           15 SCINNITYAAQMSHNHI--LKRIGCCLQ-----TPIPILVFQSVEYG-TLRDCIFGA---PL---PRLKIASDIVNSLAY   80 (241)
Q Consensus        15 ~~~~e~~~l~~l~h~~i--v~~~~~~~~-----~~~~~lv~e~~~~~-sL~~~l~~~---~~---~~~~~~~~i~~~l~~   80 (241)
                      .+.+|.+.+.+|...+|  ++.+++...     ....++|+|++++. +|.+++...   ..   .+..++.+++..++-
T Consensus        74 ~a~rE~~~l~~L~~~GIptP~pVa~~e~~~~~~~~~s~LVte~l~~~~sL~~~~~~~~~~~~~~~~~~~ll~~la~~i~~  153 (268)
T PRK15123         74 GADREWRAIHRLHEVGVDTMTGVAFGERGSNPATRTSFIITEDLAPTISLEDYCADWATNPPDPRLKRMLIKRVATMVRD  153 (268)
T ss_pred             HHHHHHHHHHHHHHcCCCCCCeeEEEEecCCCccceeEEEEeeCCCCccHHHHHHhhcccCCCHHHHHHHHHHHHHHHHH
Confidence            47899999999854333  344555543     22468999999865 899887532   11   345788999999999


Q ss_pred             hhcCCCCCceeccCCCCCeeecC-------CCCeEEeeccCce
Q 044022           81 LHFGFPRPIVLRNFKTQNILFNE-------ENVAKWFDFLLSI  116 (241)
Q Consensus        81 lh~~~~~~ivh~dl~~~nil~~~-------~~~~~l~df~~~~  116 (241)
                      ||   ..|++|+|+++.|||++.       +..+.++||+.+.
T Consensus       154 LH---~~Gi~HgDL~~~NiLl~~~~~~~~~~~~~~LIDl~r~~  193 (268)
T PRK15123        154 MH---AAGINHRDCYICHFLLHLPFPGREEDLKLSVIDLHRAQ  193 (268)
T ss_pred             HH---HCcCccCCCChhhEEEeccccCCCCCceEEEEECCccc
Confidence            99   999999999999999975       4678999998774

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.92  E-value=4.7e-10  Score=96.49  Aligned_cols=148  Identities=19%  Similarity=0.224  Sum_probs=97.3

Q ss_pred             HHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcce-------eecccccCCCccCccccc
Q 044022           71 ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHI-------TTDRVIGTRGYSAPEYIS  143 (241)
Q Consensus        71 ~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~-------~~~~~~~~~~~~aPE~~~  143 (241)
                      +.+.+.|+.|+|.  +.++||++|.|++|.++..+.+||+.|+++..........       .........-|.|||++.
T Consensus       105 l~~v~dgl~flh~--sAk~VH~ni~p~~i~~na~~~wkl~Gf~f~v~~~~~~~~p~~~yd~~lp~~~~~~~~f~apE~~~  182 (700)
T KOG2137|consen  105 LGNVADGLAFLHR--SAKVVHGNIQPEAIVVNANGDWKLAGFSFCVNANGPTEYPFSEYDPPLPLLLQPHLNFLAPEYLL  182 (700)
T ss_pred             hhcccchhhhhcc--CcceeecccchhheeeccCcceeeccchhhhccCCCCccccccCCCCCChhhccCcccccchhhc
Confidence            3455689999997  7789999999999999999999999999887554421110       001112335589999999


Q ss_pred             ccCCCcchhhHHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHH
Q 044022          144 ICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASA  222 (241)
Q Consensus       144 ~~~~~~~~Di~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (241)
                      +...++++|++|+|+++|.+.. |+..+.. ...     ............-+      ......        .-+.+++
T Consensus       183 ~~~~~~~sd~fSlG~li~~i~~~gk~i~~a-~~~-----~~~~~~~~~~~~~~------~~~~s~--------~~p~el~  242 (700)
T KOG2137|consen  183 GTTNTPASDVFSLGVLIYTIYNGGKSIIAA-NGG-----LLSYSFSRNLLNAG------AFGYSN--------NLPSELR  242 (700)
T ss_pred             cccccccccceeeeeEEEEEecCCcchhhc-cCC-----cchhhhhhcccccc------cccccc--------cCcHHHH
Confidence            9888999999999999999995 4443322 111     01111111111000      000011        2225678


Q ss_pred             HHHHHhccCCCCCCCCCC
Q 044022          223 QLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       223 ~l~~~cl~~~p~~Rpt~~  240 (241)
                      +=+.+++..++..||++.
T Consensus       243 ~~l~k~l~~~~~~rp~~~  260 (700)
T KOG2137|consen  243 ESLKKLLNGDSAVRPTLD  260 (700)
T ss_pred             HHHHHHhcCCcccCcchh
Confidence            888999999999999653

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.85  E-value=3e-09  Score=90.12  Aligned_cols=144  Identities=20%  Similarity=0.188  Sum_probs=109.1

Q ss_pred             HHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcC----CCchHHHHHHHHHHHhchhhcCCCCCceec
Q 044022           18 NNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFG----APLPRLKIASDIVNSLAYLHFGFPRPIVLR   92 (241)
Q Consensus        18 ~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~----~~~~~~~~~~~i~~~l~~lh~~~~~~ivh~   92 (241)
                      .|+-+...+ -|.+.+..+..|.+-.+.++--|||+++++......    .+...+++..+++.++.++|   ++.++|.
T Consensus       314 ~ev~l~~~l~~~~~~~g~~~~W~~~r~~~ip~e~~~~~s~~l~~~~~~~~d~~~~~~~~~q~~~~l~~i~---s~~~~~~  390 (524)
T KOG0601|consen  314 GEVILEAILGSHLPSVGKNSSWSQLRQGYIPLEFCEGGSSSLRSVTSQMLDEDPRLRLTAQILTALNVIH---SKLFVHL  390 (524)
T ss_pred             hhhhHhhHhhcccccCCCCCCccccccccCchhhhcCcchhhhhHHHHhcCcchhhhhHHHHHhcccccc---chhhhcc
Confidence            455555555 688899888888888888899999999988776522    13467888999999999999   9999999


Q ss_pred             cCCCCCeeecCC-CCeEEeeccCceecCCCCcceeecccccCCCc-cCcccccccCCCcchhhHHHHHHHHHHHhcCc
Q 044022           93 NFKTQNILFNEE-NVAKWFDFLLSISIPEGETHITTDRVIGTRGY-SAPEYISICVLNEKSNVFSFGAFLFELLAGRI  168 (241)
Q Consensus        93 dl~~~nil~~~~-~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~-~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~~  168 (241)
                      |++|+||++..+ +..+++||+....+........    ..+..| .++.......+..+.|++|||.-+.+.+++.+
T Consensus       391 d~~psni~i~~~~~~~~~~~~~~~t~~~~~~~~~~----~~~r~~p~~~~~~e~~~~~~~~~~~sl~~~~~e~~~~~~  464 (524)
T KOG0601|consen  391 DVKPSNILISNDGFFSKLGDFGCWTRLAFSSGVFH----HIDRLYPIAEILLEDYPHLSKADIFSLGLSVDEAITGSP  464 (524)
T ss_pred             cccccceeeccchhhhhccccccccccceeccccc----ccccccccchhhccccccccccccccccccccccccCcc
Confidence            999999999886 7888999998764332221111    122233 35555566678889999999999999988864

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.85  E-value=2.3e-08  Score=76.60  Aligned_cols=103  Identities=14%  Similarity=0.124  Sum_probs=81.4

Q ss_pred             cHHHHHHHHHHHHhcCCC--cccceeeeeeeCC----cceEEEEecCC-CCHHHhhcC----CCchHHHHHHHHHHHhch
Q 044022           12 TYGSCINNITYAAQMSHN--HILKRIGCCLQTP----IPILVFQSVEY-GTLRDCIFG----APLPRLKIASDIVNSLAY   80 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~--~iv~~~~~~~~~~----~~~lv~e~~~~-~sL~~~l~~----~~~~~~~~~~~i~~~l~~   80 (241)
                      ......+|.+.+..|...  ...+.+++.....    ..++|+|++++ .+|.+++..    .......++.+++..++-
T Consensus        54 ~~~ra~~E~~~~~~L~~~Gi~tP~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~~~~~~~~~~~~~~ll~~l~~~i~~  133 (206)
T PF06293_consen   54 RRSRAKREWRNLQRLREAGIPTPEPVAYGERRKGGGYRSYLITEALPGAQDLRDLLQQWEQLDPSQRRELLRALARLIAK  133 (206)
T ss_pred             cchHHHHHHHHHHHHHHcCCCCCcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHHHhhcccchhhHHHHHHHHHHHHHH
Confidence            455678899988888543  3445666665532    34899999986 479998876    233567889999999999


Q ss_pred             hhcCCCCCceeccCCCCCeeecCCC---CeEEeeccCcee
Q 044022           81 LHFGFPRPIVLRNFKTQNILFNEEN---VAKWFDFLLSIS  117 (241)
Q Consensus        81 lh~~~~~~ivh~dl~~~nil~~~~~---~~~l~df~~~~~  117 (241)
                      ||   ..|++|+|+++.|||++.++   .+.++||+.+..
T Consensus       134 lH---~~gi~H~Dl~~~NILv~~~~~~~~~~lIDld~~~~  170 (206)
T PF06293_consen  134 LH---DAGIYHGDLNPSNILVDPDDGQYRFYLIDLDRMRF  170 (206)
T ss_pred             HH---HCcCCCCCCCcccEEEeCCCCceeEEEEcchhcee
Confidence            99   99999999999999999887   889999987754

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=98.78  E-value=8.7e-08  Score=78.77  Aligned_cols=161  Identities=16%  Similarity=0.174  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc--
Q 044022           67 RLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI--  144 (241)
Q Consensus        67 ~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~--  144 (241)
                      .++.++.++.+.+-||   ..|.+-+|++++|+|+++++.+.+.|-..-..-.++...   -..+|...|++||.-.-  
T Consensus       119 llrvaRnlA~aFA~lH---~~Gh~vGDVn~~~~lVsd~~~V~LVdsDsfqi~~ng~~~---~cpVg~~eftPPElQ~~~s  192 (637)
T COG4248         119 LLRVARNLASAFATLH---EHGHVVGDVNQNSFLVSDDSKVVLVDSDSFQINANGTLH---LCPVGVSEFTPPELQTLPS  192 (637)
T ss_pred             HHHHHHHHHHHHHHHH---hcCCcccccCccceeeecCceEEEEcccceeeccCCceE---ecccCccccCCHHHhcccc
Confidence            5788999999999999   999999999999999999999999875433222222211   23478899999996642  


Q ss_pred             ---cCCCcchhhHHHHHHHHHHHhc-CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccc----cCCCchhHHH
Q 044022          145 ---CVLNEKSNVFSFGAFLFELLAG-RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIV----QDIPCIEKEQ  216 (241)
Q Consensus       145 ---~~~~~~~Di~s~G~~~~~~~~g-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  216 (241)
                         -.-+..+|.+.+|+++++++.| +.||....-.....+..-.+.     ..+.+...++....    +....  -+.
T Consensus       193 f~g~~r~~~hD~FGLavLiF~lL~ggrHPysGI~~~~~ap~p~E~~I-----a~g~f~ya~~~~~g~~p~P~~~P--~~~  265 (637)
T COG4248         193 FVGFERTANHDNFGLAVLIFHLLFGGRHPYSGIPLISDAPNPLETDI-----AHGRFAYASDQRRGLKPPPRSIP--LSM  265 (637)
T ss_pred             ccccCCCccccchhHHHHHHHHHhcCCCCCCcccccCCCCCcchhhh-----hcceeeechhccCCCCCCCCCCC--hhh
Confidence               2346789999999999998886 899865432222222221111     11111111111100    01111  123


Q ss_pred             HHHHHHHHHHHhccCC--CCCCCCCC
Q 044022          217 QLHASAQLTLECVNNS--PEDRPTMV  240 (241)
Q Consensus       217 ~~~~~~~l~~~cl~~~--p~~Rpt~~  240 (241)
                      -.+++..+..+|+...  +.-|||++
T Consensus       266 Lpp~vqAlF~qaF~~~~~~~~RP~a~  291 (637)
T COG4248         266 LPPDVQALFQQAFTESGVATPRPTAK  291 (637)
T ss_pred             cCHHHHHHHHHHhcccCCCCCCCCHH
Confidence            3467788899998653  67899874

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=98.75  E-value=4.2e-08  Score=75.70  Aligned_cols=105  Identities=21%  Similarity=0.325  Sum_probs=75.0

Q ss_pred             cHHHHHHHHHHHHhcCCC--cccceeeeeeeC---CcceEEEEecCCCCHHHhhcC---CCchHHHHHHHHHHHhchhhc
Q 044022           12 TYGSCINNITYAAQMSHN--HILKRIGCCLQT---PIPILVFQSVEYGTLRDCIFG---APLPRLKIASDIVNSLAYLHF   83 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~--~iv~~~~~~~~~---~~~~lv~e~~~~~sL~~~l~~---~~~~~~~~~~~i~~~l~~lh~   83 (241)
                      ....+.+|+++++.+++.  ++.+++.+....   +..++||||++|.++.+.+..   .......++.+++.+++.||.
T Consensus        38 ~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~~~v~e~i~G~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~  117 (223)
T cd05154          38 SAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTPFYVMERVDGRVLRDRLLRPELSPEERRALARALADTLAALHS  117 (223)
T ss_pred             ccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCceEEEEEeCCEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence            456788999999999763  456677776653   367899999999888776531   111334555666666666662


Q ss_pred             C-----------------------------------------------------CCCCceeccCCCCCeeecC--CCCeE
Q 044022           84 G-----------------------------------------------------FPRPIVLRNFKTQNILFNE--ENVAK  108 (241)
Q Consensus        84 ~-----------------------------------------------------~~~~ivh~dl~~~nil~~~--~~~~~  108 (241)
                      .                                                     ....++|+|+.+.||+++.  ++.+.
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~~~  197 (223)
T cd05154         118 VDPAAVGLGDLGRPGGYLERQVARWRRQYDASRTDEPPAMERLLRWLEAHLPADSRPGLVHGDYRLGNVLFHPDEPRVVA  197 (223)
T ss_pred             CChhhcCCcccCCCCchHHHHHHHHHHHHHhhcccccHHHHHHHHHHHhhCCCCCCcEEEECCCCcccEEEcCCCCcEEE
Confidence            1                                                     1345799999999999998  56688


Q ss_pred             EeeccCce
Q 044022          109 WFDFLLSI  116 (241)
Q Consensus       109 l~df~~~~  116 (241)
                      |+||+.+.
T Consensus       198 iID~e~~~  205 (223)
T cd05154         198 VLDWELAT  205 (223)
T ss_pred             EEeccccc
Confidence            99998774

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=98.69  E-value=6.7e-08  Score=83.52  Aligned_cols=103  Identities=13%  Similarity=0.091  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHhcC----CCcccceeeeeee-CCcceEEEEecCCCCHHHh--hcCCCchHHHHHHHHHHH-hchhhcCCC
Q 044022           15 SCINNITYAAQMS----HNHILKRIGCCLQ-TPIPILVFQSVEYGTLRDC--IFGAPLPRLKIASDIVNS-LAYLHFGFP   86 (241)
Q Consensus        15 ~~~~e~~~l~~l~----h~~iv~~~~~~~~-~~~~~lv~e~~~~~sL~~~--l~~~~~~~~~~~~~i~~~-l~~lh~~~~   86 (241)
                      +|.+|+..+.+++    +.+.+.+-.++.+ ....++||||+.|+++.+.  +.........++...+.. +.-+.   .
T Consensus       202 D~~~Ea~N~~~~~~~f~~~~~v~VP~v~~d~st~~VLvmE~i~G~~l~d~~~l~~~g~d~~~la~~~v~~~~~Qif---~  278 (537)
T PRK04750        202 DLMREAANASQLRRNFEDSDMLYVPEVYWDYCSETVMVMERMYGIPVSDVAALRAAGTDMKLLAERGVEVFFTQVF---R  278 (537)
T ss_pred             CHHHHHHHHHHHHHHccCCCCeecceeecccCCCceEEEeeecCccHHhHHHHHhcCCCHHHHHHHHHHHHHHHHH---h
Confidence            3566766666663    4444444343332 3456899999999999874  333332222333322222 22234   6


Q ss_pred             CCceeccCCCCCeeecCCC----CeEEeeccCceecCC
Q 044022           87 RPIVLRNFKTQNILFNEEN----VAKWFDFLLSISIPE  120 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~----~~~l~df~~~~~~~~  120 (241)
                      .|++|+|++|.||+++.++    .+++.|||.....+.
T Consensus       279 ~GffHaDpHPGNIlv~~~g~~~~~i~llDFGivg~l~~  316 (537)
T PRK04750        279 DGFFHADMHPGNIFVSYDPPENPRYIALDFGIVGSLNK  316 (537)
T ss_pred             CCeeeCCCChHHeEEecCCCCCCeEEEEecceEEECCH
Confidence            7999999999999999888    999999999987654

>PRK09902 hypothetical protein; Provisional

Probab=98.45  E-value=1.6e-06  Score=65.84  Aligned_cols=102  Identities=11%  Similarity=0.100  Sum_probs=77.5

Q ss_pred             cHHHHHHHHHHHHhcCCCc--ccceeeeeeeC-----CcceEEEEecC-CCCHHHhhcCCCc------hHHHHHHHHHHH
Q 044022           12 TYGSCINNITYAAQMSHNH--ILKRIGCCLQT-----PIPILVFQSVE-YGTLRDCIFGAPL------PRLKIASDIVNS   77 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~--iv~~~~~~~~~-----~~~~lv~e~~~-~~sL~~~l~~~~~------~~~~~~~~i~~~   77 (241)
                      ....|.+|+..+++|...+  +.+.. ++...     -..++|+|-+. ..+|.+++.....      .+..++.+++..
T Consensus        62 g~ptf~rE~~~L~~L~~~GvPVP~pv-f~~~~k~~~~~rA~LVTe~L~g~~~L~~~l~~~~~~~~~~~~k~~il~~va~~  140 (216)
T PRK09902         62 GRPTIVREVAVIKELERAGVIVPKIV-FGEAVKIEGEWRALLVTEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALA  140 (216)
T ss_pred             CchHHHHHHHHHHHHHHcCCCCCccc-eeeeeccCCceEEEEEEEeCCCCccHHHHHhcCCcCCcchHHHHHHHHHHHHH
Confidence            6778999999999995433  33333 33211     14579999775 3589988865322      356889999999


Q ss_pred             hchhhcCCCCCceeccCCCCCeeecCCCC--eEEeeccCcee
Q 044022           78 LAYLHFGFPRPIVLRNFKTQNILFNEENV--AKWFDFLLSIS  117 (241)
Q Consensus        78 l~~lh~~~~~~ivh~dl~~~nil~~~~~~--~~l~df~~~~~  117 (241)
                      ++-||   ..++.|+|+.+.||+++..+.  +.++||..++.
T Consensus       141 ia~LH---~~Gv~Hgdly~khIll~~~g~~~v~lIDlEk~r~  179 (216)
T PRK09902        141 FKKMH---SVNRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRR  179 (216)
T ss_pred             HHHHH---HCCCcCCCCCHhheeecCCCCeeEEEEEhhccch
Confidence            99999   999999999999999986677  89999977653

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=98.39  E-value=1.5e-06  Score=73.19  Aligned_cols=128  Identities=16%  Similarity=0.223  Sum_probs=96.6

Q ss_pred             HHHHHHHhcCCCcccceeeeeee----CCcceEEEEecCC-CCHHHhhcCCC-------------------chHHHHHHH
Q 044022           18 NNITYAAQMSHNHILKRIGCCLQ----TPIPILVFQSVEY-GTLRDCIFGAP-------------------LPRLKIASD   73 (241)
Q Consensus        18 ~e~~~l~~l~h~~iv~~~~~~~~----~~~~~lv~e~~~~-~sL~~~l~~~~-------------------~~~~~~~~~   73 (241)
                      .-++.++++.|+|+|++.++|..    ...+++|++|+++ ++|.+.-....                   ...+.++.|
T Consensus       322 ~lve~wkkl~h~NvV~frevf~t~tF~D~SlvlvYDYyP~s~TL~d~~F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~Q  401 (655)
T KOG3741|consen  322 SLVEAWKKLCHTNVVPFREVFLTYTFGDLSLVLVYDYYPSSPTLYDLYFANPPFTKRTNSFYPSQNLKAPEEVLWSYISQ  401 (655)
T ss_pred             HHHHHHHHhccCceeehhhhhhhhccCcceEEEEEecCCCCchHHHHHccCCccccccccccccCCCCchHHHHHHHHHH
Confidence            45888999999999999998873    3367999999863 68877643321                   124678999


Q ss_pred             HHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhh
Q 044022           74 IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNV  153 (241)
Q Consensus        74 i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di  153 (241)
                      +..||.++|   +.|+.-+-|.+.+|+++.+.+++|+..|..-......              .+|  +   ....+-|.
T Consensus       402 LtaaL~sIH---ssGLAck~L~~~kIlv~G~~RIriS~C~i~Dvl~~d~--------------~~~--l---e~~Qq~D~  459 (655)
T KOG3741|consen  402 LTAALYSIH---SSGLACKTLDLKKILVTGKMRIRISGCGIMDVLQEDP--------------TEP--L---ESQQQNDL  459 (655)
T ss_pred             HHHHHHHHH---hcCceeecccHhHeEeeCcceEEEecccceeeecCCC--------------Ccc--h---hHHhhhhH
Confidence            999999999   8999999999999999999888887766554332221              011  1   11245688


Q ss_pred             HHHHHHHHHHHhcC
Q 044022          154 FSFGAFLFELLAGR  167 (241)
Q Consensus       154 ~s~G~~~~~~~~g~  167 (241)
                      -.||.+++.+.+|.
T Consensus       460 ~~lG~ll~aLAt~~  473 (655)
T KOG3741|consen  460 RDLGLLLLALATGT  473 (655)
T ss_pred             HHHHHHHHHHhhcc
Confidence            89999999999985

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=98.33  E-value=2.3e-06  Score=66.77  Aligned_cols=99  Identities=16%  Similarity=0.114  Sum_probs=69.7

Q ss_pred             cHHHHHHHHHHHHhcCCC--cccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCchHHHHHHHHHHHhchhhcCCCCCc
Q 044022           12 TYGSCINNITYAAQMSHN--HILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDIVNSLAYLHFGFPRPI   89 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~--~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~i~~~l~~lh~~~~~~i   89 (241)
                      ......+|.++|++|...  .+.+.+++    +..++|||+.+|-.|...-- .....-.++..|+..+...-   ..|+
T Consensus       152 sRl~A~rEf~~L~~L~~~G~~VP~P~~~----nRHaVvMe~ieG~eL~~~r~-~~en~~~il~~il~~~~~~~---~~Gi  223 (304)
T COG0478         152 SRLAAEREFEALQRLYPEGVKVPKPIAW----NRHAVVMEYIEGVELYRLRL-DVENPDEILDKILEEVRKAY---RRGI  223 (304)
T ss_pred             HHHHHHHHHHHHHHhhhcCCCCCCcccc----ccceeeeehcccceeecccC-cccCHHHHHHHHHHHHHHHH---HcCc
Confidence            345578899999999654  66666654    35689999999866665431 11122234444444444444   5789


Q ss_pred             eeccCCCCCeeecCCCCeEEeeccCceec
Q 044022           90 VLRNFKTQNILFNEENVAKWFDFLLSISI  118 (241)
Q Consensus        90 vh~dl~~~nil~~~~~~~~l~df~~~~~~  118 (241)
                      ||+|+++-||+++.+|.+.++||-.+.+.
T Consensus       224 VHGDlSefNIlV~~dg~~~vIDwPQ~v~~  252 (304)
T COG0478         224 VHGDLSEFNILVTEDGDIVVIDWPQAVPI  252 (304)
T ss_pred             cccCCchheEEEecCCCEEEEeCcccccC
Confidence            99999999999999999999999766543

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=98.31  E-value=3.2e-06  Score=63.65  Aligned_cols=98  Identities=20%  Similarity=0.176  Sum_probs=78.6

Q ss_pred             HHHHHHHHhcCC-CcccceeeeeeeCCcceEEEEecCCCCH-------HHhhcCCCchHHHHHHHHHHHhchhhcCCCCC
Q 044022           17 INNITYAAQMSH-NHILKRIGCCLQTPIPILVFQSVEYGTL-------RDCIFGAPLPRLKIASDIVNSLAYLHFGFPRP   88 (241)
Q Consensus        17 ~~e~~~l~~l~h-~~iv~~~~~~~~~~~~~lv~e~~~~~sL-------~~~l~~~~~~~~~~~~~i~~~l~~lh~~~~~~   88 (241)
                      .+|.-+++.|++ +++++++|+|   + ..+|.|+...+++       .++....-..+.+++.+++..+.+|+......
T Consensus         7 ~~E~lll~~l~~~~~~pk~lG~C---G-~~~v~E~~~~~~~~~~~~~l~~~~~~~w~~R~~iA~~lL~~l~~l~~~~~~~   82 (188)
T PF12260_consen    7 NNEPLLLQLLQGSEPFPKLLGSC---G-RFYVVEYVGAGSLYGIYRPLSQFLQSPWEQRAKIALQLLELLEELDHGPLGF   82 (188)
T ss_pred             ccHHHHHHHcCCCCCCCCeeeEC---C-CEEEEEeecCccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            358888999976 6999999999   2 2568899976654       34444444478999999999999999655567


Q ss_pred             ceeccCCCCCeeecCCCCeEEeeccCceec
Q 044022           89 IVLRNFKTQNILFNEENVAKWFDFLLSISI  118 (241)
Q Consensus        89 ivh~dl~~~nil~~~~~~~~l~df~~~~~~  118 (241)
                      +.-+|++++|+.++.++.+|++|.+.....
T Consensus        83 ~~lcDv~~~nfgv~~~~~lk~iDld~v~~~  112 (188)
T PF12260_consen   83 FYLCDVSPDNFGVNDDGRLKLIDLDDVFVE  112 (188)
T ss_pred             EEEeecchHHeEEeCCCcEEEEechhcchh
Confidence            889999999999999999999999776543

Proteins in this uncharacterised family are described as transmembrane proteins.

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=98.25  E-value=4e-06  Score=63.96  Aligned_cols=66  Identities=18%  Similarity=0.140  Sum_probs=51.6

Q ss_pred             cceEEEEecCCCCHHHhhcCCCchHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCce
Q 044022           43 IPILVFQSVEYGTLRDCIFGAPLPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSI  116 (241)
Q Consensus        43 ~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~  116 (241)
                      ..+++|||++|..|.+...-..    .++..+.+++.-+|   +.|++|+|..|.|++++.++ ++++||+..+
T Consensus       117 ~~~ll~EYIeG~~l~d~~~i~e----~~~~ki~~~ikqlH---~~G~~HGD~hpgNFlv~~~~-i~iID~~~k~  182 (229)
T PF06176_consen  117 SYVLLMEYIEGVELNDIEDIDE----DLAEKIVEAIKQLH---KHGFYHGDPHPGNFLVSNNG-IRIIDTQGKR  182 (229)
T ss_pred             EEEEEEEEecCeecccchhcCH----HHHHHHHHHHHHHH---HcCCccCCCCcCcEEEECCc-EEEEECcccc
Confidence            4568999999988876543211    24456778899999   99999999999999998554 8999997654

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=98.09  E-value=3.3e-05  Score=60.71  Aligned_cols=46  Identities=7%  Similarity=-0.154  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHhcC-CCcccceeeeeeeCCcceEEEEecCCCCHHHh
Q 044022           14 GSCINNITYAAQMS-HNHILKRIGCCLQTPIPILVFQSVEYGTLRDC   59 (241)
Q Consensus        14 ~~~~~e~~~l~~l~-h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~   59 (241)
                      .+..+|+++++.+. +--+.+++++....+..++|||+++|.+|...
T Consensus        36 ~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e~i~G~~l~~~   82 (244)
T cd05150          36 YELEREAERLRWLAGKLPVPEVIDYGSDDGRAWLLTSAVPGVPAAAL   82 (244)
T ss_pred             cchHHHHHHHHHHHhcCCCCeEEEEEecCCccEEEEEeeCCccHhHh
Confidence            45678999999984 33455677777666678999999998887654

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=98.07  E-value=4.5e-05  Score=57.77  Aligned_cols=96  Identities=22%  Similarity=0.273  Sum_probs=71.5

Q ss_pred             cHHHHHHHHHHHHhcC------CCcccceeeeeeeCCcceEEEEecC------CCCHHHhhcCCCchHHHHHHHHHHHhc
Q 044022           12 TYGSCINNITYAAQMS------HNHILKRIGCCLQTPIPILVFQSVE------YGTLRDCIFGAPLPRLKIASDIVNSLA   79 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~------h~~iv~~~~~~~~~~~~~lv~e~~~------~~sL~~~l~~~~~~~~~~~~~i~~~l~   79 (241)
                      ..++..+|+....++.      +.+|.+++|+..++.-.-+|+|...      ..||.++++...... .+...+-.-..
T Consensus        54 ~~~~~~~E~~~y~~l~~~~~~~~~~i~r~~G~veT~~G~Glv~e~I~d~dG~~s~TL~~~l~~~~~~~-~~~~~L~~f~~  132 (199)
T PF10707_consen   54 RYRQNRRELRYYKQLSLRRGVDWSHIPRFYGFVETNLGLGLVVELIRDADGNISPTLEDYLKEGGLTE-ELRQALDEFKR  132 (199)
T ss_pred             hhHHHHHHHHHHHHHhhccCCcccccccEeEEEecCCceEEEEEEEECCCCCcCccHHHHHHcCCccH-HHHHHHHHHHH
Confidence            4677788888888877      7799999999998887888999753      247888887665543 34444444455


Q ss_pred             hhhcCCCCCceeccCCCCCeeecCCC----CeEEee
Q 044022           80 YLHFGFPRPIVLRNFKTQNILFNEEN----VAKWFD  111 (241)
Q Consensus        80 ~lh~~~~~~ivh~dl~~~nil~~~~~----~~~l~d  111 (241)
                      +|-   +..|+.+|++|.||++....    .+.|+|
T Consensus       133 ~l~---~~~Iv~~dl~~~NIv~~~~~~~~~~lvlID  165 (199)
T PF10707_consen  133 YLL---DHHIVIRDLNPHNIVVQRRDSGEFRLVLID  165 (199)
T ss_pred             HHH---HcCCeecCCCcccEEEEecCCCceEEEEEe
Confidence            666   78899999999999996442    467777

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=98.04  E-value=2e-06  Score=74.25  Aligned_cols=144  Identities=17%  Similarity=0.095  Sum_probs=105.3

Q ss_pred             HHHHHHHHHhcCCCc-ccceeeeeeeCCcceEEEEecCCC-CHHHhhcCCC-----chHHHHHHHHHHHhchhhcCCCCC
Q 044022           16 CINNITYAAQMSHNH-ILKRIGCCLQTPIPILVFQSVEYG-TLRDCIFGAP-----LPRLKIASDIVNSLAYLHFGFPRP   88 (241)
Q Consensus        16 ~~~e~~~l~~l~h~~-iv~~~~~~~~~~~~~lv~e~~~~~-sL~~~l~~~~-----~~~~~~~~~i~~~l~~lh~~~~~~   88 (241)
                      ..-++++|.+++||| .+..++.+..+...+++++++.++ +-..-....+     .+.....+.-..+++++|   +..
T Consensus       280 ~rl~~eLLdK~n~P~~~v~~~~d~~~E~~~~i~~~i~s~~rs~~~~~~~se~~~~~~~~~~~~r~et~~l~~l~---~~~  356 (829)
T KOG0576|consen  280 RRLAIELLDKVNNPNPVVRYLEDYDGEDYLWIPMRICSTGRSSALEMTVSEIALEQYQFAYPLRKETRPLAELH---SSY  356 (829)
T ss_pred             hHHHHHHHHHccCCCCcccccccCCcccccchhhhhhcCCccccccCChhhHhhhhhhhhhhhhhhcccccccc---ccc
Confidence            345889999999999 777788888888899999999766 2222222111     123445666778899999   555


Q ss_pred             ceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcCc
Q 044022           89 IVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRI  168 (241)
Q Consensus        89 ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~~  168 (241)
                      -+|+|    ||+... +..+.++|+....+....   ......+++.|+|||+.....+....|.|+.|.-..++.-|-+
T Consensus       357 ~~~~d----~~l~s~-~~~~~~~~~v~~~L~~~~---~~~t~~~~~~~~~pev~~~~~~~~~p~~~~~~~~~~~~ap~~p  428 (829)
T KOG0576|consen  357 KVHRD----NILGSE-EEVKLLDFAVPPQLTRTM---KPRTAIGTPEPLAPEVIQENTIDGCPDSGSLAVSAIQMAPGLP  428 (829)
T ss_pred             ccCcc----cccccc-cccccccccCCcccCccc---ccccCCCCCCCCCchhhcccccccCCCccCCCcchhhcCCCCC
Confidence            67888    666554 677899998876665543   2344578999999999999999999999999976666766766


Q ss_pred             cc
Q 044022          169 HI  170 (241)
Q Consensus       169 p~  170 (241)
                      |-
T Consensus       429 Pr  430 (829)
T KOG0576|consen  429 PR  430 (829)
T ss_pred             CC
Confidence            54

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=98.00  E-value=5e-05  Score=59.01  Aligned_cols=103  Identities=10%  Similarity=0.032  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHhcCCCc--ccceeeeeeeCCcceEEEEecCCCC-HHHhhcCCCc------------------------
Q 044022           13 YGSCINNITYAAQMSHNH--ILKRIGCCLQTPIPILVFQSVEYGT-LRDCIFGAPL------------------------   65 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~--iv~~~~~~~~~~~~~lv~e~~~~~s-L~~~l~~~~~------------------------   65 (241)
                      .....+|.++++.+..-.  +.+.+++....+...+|||+++|.+ +...+.....                        
T Consensus        36 ~~~i~~E~~~l~~l~~~glpvP~~~~~~~~~~~~glv~e~i~G~~~~~~~~~~~~~~~~~l~~~la~~l~~lH~~~~~~~  115 (226)
T TIGR02172        36 KETIKREFDASRKVFSLGIPTPHPFDLVEDGGRLGLIYELIVGKRSFSRIISDNPSRLEEIAKIFAEMAKKLHSTKCDTS  115 (226)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCceEEEEecCCeeeeeeeecCCccchhhhhcCCHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            445688999999986433  4567777777777889999998753 2222211100                        


Q ss_pred             ---h-HHHHHHH----------HHHH-hchhhc-CCCCCceeccCCCCCeeecCCCCeEEeeccCce
Q 044022           66 ---P-RLKIASD----------IVNS-LAYLHF-GFPRPIVLRNFKTQNILFNEENVAKWFDFLLSI  116 (241)
Q Consensus        66 ---~-~~~~~~~----------i~~~-l~~lh~-~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~  116 (241)
                         . ...+..+          +... ..+|.. .....++|+|+.|.|++++.++ +.++||+.+.
T Consensus       116 ~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~HgD~~~~Nii~~~~~-~~iIDwe~a~  181 (226)
T TIGR02172       116 TFQSYKEKIRKFIEEKDFVPKDYKEKARAFIKEVPDTSTCLHGDFQIGNLITSGKG-TYWIDLGDFG  181 (226)
T ss_pred             cHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhCCCCCceEecCCCCCcEEEcCCC-cEEEechhcC
Confidence               0 0001000          0011 111110 1133468999999999999888 9999998763

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=97.55  E-value=0.00033  Score=60.65  Aligned_cols=103  Identities=14%  Similarity=0.102  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHhcC----CCcccceeeeee-eCCcceEEEEecCCCCHHHh--hcCCCchHHHHHHHHHHHh-chhhcCCC
Q 044022           15 SCINNITYAAQMS----HNHILKRIGCCL-QTPIPILVFQSVEYGTLRDC--IFGAPLPRLKIASDIVNSL-AYLHFGFP   86 (241)
Q Consensus        15 ~~~~e~~~l~~l~----h~~iv~~~~~~~-~~~~~~lv~e~~~~~sL~~~--l~~~~~~~~~~~~~i~~~l-~~lh~~~~   86 (241)
                      .+.+|+..+.+++    +..-+.+=.+++ -.+.-.++|||+.|..+.+.  ++..+..+..++..++.+. ..+-   .
T Consensus       207 Dy~~EA~n~~~~~~nf~~~~~v~VP~V~we~t~~~VLtmE~i~Gi~i~d~~~l~~~g~d~k~ia~~~~~~f~~q~~---~  283 (517)
T COG0661         207 DYRREAANAERFRENFKDDPDVYVPKVYWEYTTRRVLTMEWIDGIKISDIAALKSAGIDRKELAELLVRAFLRQLL---R  283 (517)
T ss_pred             CHHHHHHHHHHHHHHcCCCCCeEeceeehhccCCcEEEEEeeCCEecccHHHHHhcCCCHHHHHHHHHHHHHHHHH---h
Confidence            4667888777773    222223323332 34556899999999999887  4444444334444333321 2222   5


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCC
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPE  120 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~  120 (241)
                      .|+.|+|..|-||+++.++.+.+.|||.......
T Consensus       284 dgffHaDpHpGNi~v~~~g~i~~lDfGi~g~l~~  317 (517)
T COG0661         284 DGFFHADPHPGNILVRSDGRIVLLDFGIVGRLDP  317 (517)
T ss_pred             cCccccCCCccceEEecCCcEEEEcCcceecCCH
Confidence            7899999999999999999999999999877653

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=97.53  E-value=0.00094  Score=52.15  Aligned_cols=31  Identities=16%  Similarity=0.184  Sum_probs=25.8

Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCce
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSI  116 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~  116 (241)
                      ...++|+|+.+.|++++......|+||+.+.
T Consensus       163 ~~~l~HGD~~~~Nvlv~~~~i~giIDw~~a~  193 (235)
T cd05155         163 PPVWFHGDLAPGNLLVQDGRLSAVIDFGCLG  193 (235)
T ss_pred             CceEEeCCCCCCcEEEECCCEEEEEeCcccC
Confidence            4458999999999999877666799998763

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=97.47  E-value=0.00057  Score=63.37  Aligned_cols=148  Identities=15%  Similarity=0.154  Sum_probs=97.6

Q ss_pred             HHHHHHHHHhcCCCcccceeeeeeeCCc----ceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCCC
Q 044022           16 CINNITYAAQMSHNHILKRIGCCLQTPI----PILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        16 ~~~e~~~l~~l~h~~iv~~~~~~~~~~~----~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      -..|...+..+.|+|++.++.|-.+...    ..+..+++...++...++.-..    ....+..++..|++++|   +.
T Consensus       229 ~E~e~~~l~k~~~~n~~~~~~~~le~~~~g~~~~v~~~~~s~~~~~~~~q~v~~i~~~~~r~~~~~~~~GL~~~h---~~  305 (1351)
T KOG1035|consen  229 TEIELESLSKIAHDNLGGYFVYGLERLFRGIVLDVLQEICSKVELRSLLQSVGSIPLETLRILHQKLLEGLAYLH---SL  305 (1351)
T ss_pred             HHHHHHHHHhhccccccceeEEeehhhcchHHHHHHHhhcCccchHHHHhhccccCHHHHHHHHHHHhhhHHHHH---Hh
Confidence            3457778888899999999988776542    2344567777777776655432    33456778999999999   55


Q ss_pred             CceeccCCCC---CeeecCCCCeEEe--eccCceecCCCCcceeecccccCCCccCcccccccCCCc--chhhHHHHHHH
Q 044022           88 PIVLRNFKTQ---NILFNEENVAKWF--DFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNE--KSNVFSFGAFL  160 (241)
Q Consensus        88 ~ivh~dl~~~---nil~~~~~~~~l~--df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~--~~Di~s~G~~~  160 (241)
                      ...|.-+...   +-..+..+...++  ||+.+..........   ....+..+.++|.........  ..|+|.+|.+.
T Consensus       306 ~l~~v~L~~s~~~~~~~~~e~~~~~sl~~~~ss~~l~d~~~~~---~~~~~~~~~~~e~~~~~~~~~~r~~dL~~lgll~  382 (1351)
T KOG1035|consen  306 SLEHVVLSASSSKESTVDGEGVVAISLSDFDSSKPLPDNEKSF---SDLLAEIRNADEDLKENTAKKSRLTDLWCLGLLL  382 (1351)
T ss_pred             ccceeEEecccccccccCccceeecchhhhcccccCCCcccch---hhcCccccccccccccccchhhhhhHHHHHHHHH
Confidence            5555555554   3444555666666  787776655432211   123445567788776554443  47999999999


Q ss_pred             HHHHhcCcc
Q 044022          161 FELLAGRIH  169 (241)
Q Consensus       161 ~~~~~g~~p  169 (241)
                      ..+..|..+
T Consensus       383 ~~~~~~~~i  391 (1351)
T KOG1035|consen  383 LQLSQGEDI  391 (1351)
T ss_pred             hhhhhcCcc
Confidence            988887643

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]

Probab=97.45  E-value=0.00025  Score=60.47  Aligned_cols=163  Identities=18%  Similarity=0.213  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHhcCCCcccceeeeeeeCC-cceEEEEecCCCCHHHhhcCCCchHHHHHHHHHHHhchhhcCCCCCcee
Q 044022           13 YGSCINNITYAAQMSHNHILKRIGCCLQTP-IPILVFQSVEYGTLRDCIFGAPLPRLKIASDIVNSLAYLHFGFPRPIVL   91 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~-~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~i~~~l~~lh~~~~~~ivh   91 (241)
                      .-+.+...++++.+.|+|+..+++...... ...+|+|++ +.||++.+.........+.              .+++.|
T Consensus        26 s~~ilgr~~~lktl~~~~l~~yl~~~r~~~~r~IVV~e~~-~~Sled~~~~~~l~~~s~~--------------~~~~~~   90 (725)
T KOG1093|consen   26 SIQILGRFQYLKSLQHDNLCQYLDFSRGKHERVIVVMEHY-TMSLEDILKTGNLKDESLL--------------AHGVLH   90 (725)
T ss_pred             HHHHhhhhHHHHhhcCccceeeEeeecCccceEEEEehhh-ccchHHHHHhcccchhhhc--------------ccccce
Confidence            345667788899999999999988775432 468999999 4899998875442111111              112222


Q ss_pred             ccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcCcccc
Q 044022           92 RNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIW  171 (241)
Q Consensus        92 ~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~~p~~  171 (241)
                           .|+       .+++|- ..   +.               |  |     ....+++||||+|.++.++.-|..-+.
T Consensus        91 -----~~~-------~~~td~-~~---t~---------------~--~-----~~~~pKsdVwsl~~i~~el~L~~~l~~  132 (725)
T KOG1093|consen   91 -----LNI-------IYITDH-FL---TK---------------Y--P-----SPIGPKSDVWSLGFIILELYLGISLEA  132 (725)
T ss_pred             -----ehh-------hhcccc-cc---cc---------------C--C-----CCCCcchhhhhHHHHHHHHHHhhHHHH
Confidence                 111       222330 00   00               0  0     111259999999999999998876553


Q ss_pred             cccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          172 DLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                      ..         ...+......+.......   ...-...+...-.+.+.+..+...|+-..|..||...
T Consensus       133 ~~---------~~s~~l~~i~k~~~~d~~---~~~~a~e~~~~~~~d~~~~~~~~~c~~~~~~ir~l~~  189 (725)
T KOG1093|consen  133 EL---------TESEYLEILLKYYTDDQE---LLSTAMEHLIQLLADKKRLPLLKKCLWLEPIIRPLPM  189 (725)
T ss_pred             HH---------HHHHHHHHHHHhccCchh---HHHHHHHHHHHHhhhHhHHHHhccCCccccccccchh
Confidence            31         111222222211110000   0000000011124456778999999999999999653

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=97.40  E-value=0.00049  Score=59.56  Aligned_cols=102  Identities=14%  Similarity=0.070  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHhc----CCCc------ccceeeeeeeCCcceEEEEecCCCCHHHh--hcCCCchHHHHHHHHHHHhch-
Q 044022           14 GSCINNITYAAQM----SHNH------ILKRIGCCLQTPIPILVFQSVEYGTLRDC--IFGAPLPRLKIASDIVNSLAY-   80 (241)
Q Consensus        14 ~~~~~e~~~l~~l----~h~~------iv~~~~~~~~~~~~~lv~e~~~~~sL~~~--l~~~~~~~~~~~~~i~~~l~~-   80 (241)
                      -.|.+|++...++    +|-+      |.+++..+  .....++||||.|..+.+.  +.+.......++..+.++... 
T Consensus       239 LDF~~EA~Nae~~~~~f~~~~~~~~V~VP~Vy~~~--st~RVLtME~~~G~~i~Dl~~i~~~gi~~~~i~~~l~~~~~~q  316 (538)
T KOG1235|consen  239 LDFTKEAKNAERFRENFKDFSLLTYVLVPKVYWDL--STKRVLTMEYVDGIKINDLDAIDKRGISPHDILNKLVEAYLEQ  316 (538)
T ss_pred             cchHHHHHhHHHHHHHHHhcccccceeCCeehhhc--CcceEEEEEecCCccCCCHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            3467777666665    4544      33333333  3346899999999877664  555555555666665555443 


Q ss_pred             hhcCCCCCceeccCCCCCeeecC----CCCeEEeeccCceecCC
Q 044022           81 LHFGFPRPIVLRNFKTQNILFNE----ENVAKWFDFLLSISIPE  120 (241)
Q Consensus        81 lh~~~~~~ivh~dl~~~nil~~~----~~~~~l~df~~~~~~~~  120 (241)
                      +-   ..|++|+|=.|-||++..    +..+.+-|||+....+.
T Consensus       317 If---~~GffHaDPHPGNilv~~~~~~~~~ivllDhGl~~~is~  357 (538)
T KOG1235|consen  317 IF---KTGFFHADPHPGNILVRPNPEGDEEIVLLDHGLYAVISH  357 (538)
T ss_pred             HH---hcCCccCCCCCCcEEEecCCCCCccEEEEcccccccccH
Confidence            22   567999999999999984    67889999999876543

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=97.40  E-value=0.00092  Score=51.96  Aligned_cols=96  Identities=15%  Similarity=0.144  Sum_probs=61.3

Q ss_pred             HHHHHHHHHhcC--CCcccceeeeeeeCCcceEEEEecCCC-----CHHHhhcCCCchHHHHHHHHHHHhchhhcCCCCC
Q 044022           16 CINNITYAAQMS--HNHILKRIGCCLQTPIPILVFQSVEYG-----TLRDCIFGAPLPRLKIASDIVNSLAYLHFGFPRP   88 (241)
Q Consensus        16 ~~~e~~~l~~l~--h~~iv~~~~~~~~~~~~~lv~e~~~~~-----sL~~~l~~~~~~~~~~~~~i~~~l~~lh~~~~~~   88 (241)
                      ..+|+..|.++.  +-.+.+-+++.    ...+||||+...     .|.+.-.... ....+..+++..+.-|-.  ..+
T Consensus       115 ~~kEf~NL~R~~eAGVrvP~Pi~~~----~nVLvMEfIg~~g~pAP~LkDv~~e~~-e~~~~~~~~v~~~~~l~~--~a~  187 (268)
T COG1718         115 ARKEFRNLKRAYEAGVRVPEPIAFR----NNVLVMEFIGDDGLPAPRLKDVPLELE-EAEGLYEDVVEYMRRLYK--EAG  187 (268)
T ss_pred             HHHHHHHHHHHHHcCCCCCCceeec----CCeEEEEeccCCCCCCCCcccCCcCch-hHHHHHHHHHHHHHHHHH--hcC
Confidence            345676676663  22333333332    457999998432     2222211111 244566677777777651  489


Q ss_pred             ceeccCCCCCeeecCCCCeEEeeccCceecC
Q 044022           89 IVLRNFKTQNILFNEENVAKWFDFLLSISIP  119 (241)
Q Consensus        89 ivh~dl~~~nil~~~~~~~~l~df~~~~~~~  119 (241)
                      +||+||+.-|||+. ++.+.|+|++.+....
T Consensus       188 LVHgDLSEyNiL~~-~~~p~iID~~QaV~~~  217 (268)
T COG1718         188 LVHGDLSEYNILVH-DGEPYIIDVSQAVTID  217 (268)
T ss_pred             cccccchhhheEEE-CCeEEEEECccccccC
Confidence            99999999999999 8899999999886543

>PLN02876 acyl-CoA dehydrogenase

Probab=97.29  E-value=0.0016  Score=60.27  Aligned_cols=44  Identities=9%  Similarity=0.132  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHhcC-CCcc--cceeeeeeeC---CcceEEEEecCCCCH
Q 044022           13 YGSCINNITYAAQMS-HNHI--LKRIGCCLQT---PIPILVFQSVEYGTL   56 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~-h~~i--v~~~~~~~~~---~~~~lv~e~~~~~sL   56 (241)
                      ...+.+|+++++.+. |.++  .+++.+|...   +..++||||++|..+
T Consensus        82 ~~~~~rE~~~l~~L~~~~~vpVP~v~~~~~d~~v~G~~flVME~v~G~~~  131 (822)
T PLN02876         82 AHAVEREYQVLRALGEHTDVPVPKVYCLCTDASVIGTAFYIMEYLEGRIF  131 (822)
T ss_pred             HHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCCcCCCceEEEEecCCccc
Confidence            456889999999995 6665  6777777654   467899999987653

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=97.14  E-value=0.0014  Score=50.70  Aligned_cols=105  Identities=16%  Similarity=0.233  Sum_probs=57.0

Q ss_pred             cHHHHHHHHHHHHhcCCC--cccceeeeeee---CCcceEEEEecCCCCHHH----------------hhc---CC----
Q 044022           12 TYGSCINNITYAAQMSHN--HILKRIGCCLQ---TPIPILVFQSVEYGTLRD----------------CIF---GA----   63 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~--~iv~~~~~~~~---~~~~~lv~e~~~~~sL~~----------------~l~---~~----   63 (241)
                      ....+.+|..+++.|...  .+.+++.....   ....+++|++++|.++..                .+.   ..    
T Consensus        33 ~~~~~~~e~~~~~~l~~~~~pvP~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~l~~lh~~~~~~  112 (239)
T PF01636_consen   33 AAERLRREAAVLRQLAEHGIPVPRVLAFDTSDEFNGFPYLLMEYIPGRPLDDELSPEQRPELLRQLGRALAQLHQVPPPF  112 (239)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSBS--EEEEEEETEETSEEEEEEEEESSEEHHHTSTHHHHHHHHHHHHHHHHHHHHSHTTC
T ss_pred             CHHHHHHHHHHHHHHHhcCCCCceEEeecccccccccceEEEEEeccccccccccccccccccccchhhhhhcccccccc
Confidence            456778899999988533  24566654432   335689999999887777                110   00    


Q ss_pred             -Cc---h--HH-------HH------------HHHHHH-Hhchhh----cCCCCCceeccCCCCCeeec-CCCCeEEeec
Q 044022           64 -PL---P--RL-------KI------------ASDIVN-SLAYLH----FGFPRPIVLRNFKTQNILFN-EENVAKWFDF  112 (241)
Q Consensus        64 -~~---~--~~-------~~------------~~~i~~-~l~~lh----~~~~~~ivh~dl~~~nil~~-~~~~~~l~df  112 (241)
                       ..   .  ..       ..            ...+.. .+..++    ......++|+|+.+.||+++ .++.+.|+||
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HgD~~~~Nil~~~~~~~i~iID~  192 (239)
T PF01636_consen  113 SPFADWPEWRLEFLRQLESWTARLRASELFDDLEELEERLLQELEALLPKPLPPVLIHGDLHPGNILVDPSDGRIGIIDF  192 (239)
T ss_dssp             CCHTHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCSCEEEE-SS-SGGGEEEESSTTEEEE--G
T ss_pred             cccccccccccccccccccccccccchhhhhhhHHHHHHHHHHHHhhhccCCCcEEEEeccccccceeeeccceeEEEec
Confidence             00   0  00       00            011111 222222    11256799999999999999 5566679999


Q ss_pred             cCce
Q 044022          113 LLSI  116 (241)
Q Consensus       113 ~~~~  116 (241)
                      +.+.
T Consensus       193 e~a~  196 (239)
T PF01636_consen  193 EDAG  196 (239)
T ss_dssp             TT-E
T ss_pred             ccce
Confidence            8664

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>TIGR02721 ycfN_thiK thiamine kinase

Probab=96.84  E-value=0.0056  Score=48.45  Aligned_cols=29  Identities=10%  Similarity=0.154  Sum_probs=25.2

Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCce
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSI  116 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~  116 (241)
                      ..++|+|+.|.||+++.++ +.++||+.+.
T Consensus       146 ~~l~H~Dl~~~Nil~~~~~-~~lIDwE~a~  174 (256)
T TIGR02721       146 LAPLHMDVHAYNLVVTPQG-LKLIDWEYAS  174 (256)
T ss_pred             CeeecCCCCcCcEEEeCCC-CEEEeccccC
Confidence            3589999999999999877 7899998774

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=96.76  E-value=0.0059  Score=49.35  Aligned_cols=31  Identities=23%  Similarity=0.568  Sum_probs=27.1

Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCce
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSI  116 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~  116 (241)
                      ..+++|+|+.|.|++++.++.+.|+||+.+.
T Consensus       174 ~~~l~HgD~~~~Nil~~~~~~~~iIDfe~a~  204 (296)
T cd05153         174 PRGVIHADLFRDNVLFDGDELSGVIDFYFAC  204 (296)
T ss_pred             CCcCCccCcCcccEEEeCCceEEEeehhhhc
Confidence            4579999999999999988777899998764

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>KOG1826 consensus Ras GTPase activating protein RasGAP/neurofibromin [Defense mechanisms]

Probab=96.42  E-value=0.00053  Score=65.51  Aligned_cols=147  Identities=11%  Similarity=-0.100  Sum_probs=101.1

Q ss_pred             HHHhcCCCcccceeeeee--eCCcceEEEEecCCCCHHHhhcCCCc--------hHHHHHHHHHHHhchhhcC--CCCCc
Q 044022           22 YAAQMSHNHILKRIGCCL--QTPIPILVFQSVEYGTLRDCIFGAPL--------PRLKIASDIVNSLAYLHFG--FPRPI   89 (241)
Q Consensus        22 ~l~~l~h~~iv~~~~~~~--~~~~~~lv~e~~~~~sL~~~l~~~~~--------~~~~~~~~i~~~l~~lh~~--~~~~i   89 (241)
                      -++...|++++....=..  ....-+.+++++.+|.+.+.+-+...        .......+...+..-+|+.  .+.-.
T Consensus      1282 e~~~~~h~~~~~~p~rI~ps~s~ee~~r~~~~~~g~~f~iIikg~ee~~~ld~~~v~~~~kvsvl~~~~~ls~tnlg~T~ 1361 (2724)
T KOG1826|consen 1282 ELREAKHYLTEVDPLRIPPSESTEEYIRSLYVEFGKLFSIIIKGLEESPDLDRSPVHLRHKVSVLNRNVILSLTNLGNTN 1361 (2724)
T ss_pred             hhhhhhceeeecccccCCCCCChHHHHHHHHHHHhHHHHHHHhccccCCcchhchHHHHHHHHHhccchhhhcccCCccc
Confidence            344457887776654333  23356788999999999998755421        1222222324444444422  23346


Q ss_pred             eeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcCcc
Q 044022           90 VLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIH  169 (241)
Q Consensus        90 vh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~~p  169 (241)
                      +|+++++.|.++..+-.++++++|+.+......  ...+..++++.|++|+......++.++|+|..|+..|....|..+
T Consensus      1362 v~~~Lkf~lpmIVtny~v~~gk~gLdKIknp~~--sf~Gl~l~sp~~v~qli~N~ik~t~rsdilr~s~~ly~rs~~n~~ 1439 (2724)
T KOG1826|consen 1362 VSKSLKFTLPMIVTNYNVKLGKGGLDKIKNPVL--SFFGLELCSPIYVLQLIKNEIKFTKRSDILRRSLSLYLRSDGNAY 1439 (2724)
T ss_pred             hhhhhhhhccceecCCcccccccccccccCchH--hhhhhhhCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcccHH
Confidence            899999999999999999999999987322221  122445678888899988888888889999999999998887766


Q ss_pred             c
Q 044022          170 I  170 (241)
Q Consensus       170 ~  170 (241)
                      |
T Consensus      1440 f 1440 (2724)
T KOG1826|consen 1440 F 1440 (2724)
T ss_pred             H
Confidence            5

>COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only]

Probab=96.31  E-value=0.03  Score=45.63  Aligned_cols=32  Identities=16%  Similarity=0.354  Sum_probs=28.2

Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCcee
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSIS  117 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~  117 (241)
                      ...++|+|+.+.|++++...-+-|.||+.+..
T Consensus       197 ~~~lvHGD~~~gNlii~~~~~~gVlDwe~~~l  228 (321)
T COG3173         197 PPVLVHGDYRPGNLIIDPGRPTGVLDWELATL  228 (321)
T ss_pred             CceeeeCCcccCCEEEeCCCeeEEEecccccc
Confidence            44689999999999999998899999998854

>COG5072 ALK1 Serine/threonine kinase of the haspin family [Cell division and chromosome partitioning]

Probab=96.15  E-value=0.012  Score=48.49  Aligned_cols=71  Identities=23%  Similarity=0.169  Sum_probs=51.1

Q ss_pred             cceEEEEecCCCCHHHhhcCCCchHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCcee
Q 044022           43 IPILVFQSVEYGTLRDCIFGAPLPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSIS  117 (241)
Q Consensus        43 ~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~  117 (241)
                      ..|++|++. |+++...-.....+.+.++.+.+.-+.-+..  +-..-||++.-.||+++ +|++.|+||-+++.
T Consensus       300 y~yl~~kdh-gt~is~ik~~~~~e~lsff~s~~sil~~lek--kf~fehrnlt~~niLId-~GnvtLIDfklsRl  370 (488)
T COG5072         300 YLYLHFKDH-GTPISIIKADRSEEELSFFWSCISILDILEK--KFPFEHRNLTLDNILID-EGNVTLIDFKLSRL  370 (488)
T ss_pred             EEEEEEecC-CceeeeeecccHHHHHHHHHHHHHHHhhhhh--cCCcccccccccceeee-cCceEEEEeeeeec
Confidence            456677765 5666544333344667777776666665553  45678999999999999 99999999999873

>PLN02236 choline kinase

Probab=96.01  E-value=0.041  Score=45.62  Aligned_cols=31  Identities=13%  Similarity=0.219  Sum_probs=26.3

Q ss_pred             CCCceeccCCCCCeeecC-CCCeEEeeccCce
Q 044022           86 PRPIVLRNFKTQNILFNE-ENVAKWFDFLLSI  116 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~-~~~~~l~df~~~~  116 (241)
                      ...++|+|+++.||+++. ++.+.++||..+.
T Consensus       199 ~~~~cH~Dl~~~Nil~~~~~~~~~lID~Eya~  230 (344)
T PLN02236        199 EIGFCHNDLQYGNIMIDEETRAITIIDYEYAS  230 (344)
T ss_pred             CceEEeCCCCcCcEEEeCCCCcEEEEeehhcc
Confidence            446899999999999986 4679999998774

>KOG2268 consensus Serine/threonine protein kinase [Signal transduction mechanisms; General function prediction only]

Probab=95.82  E-value=0.012  Score=47.85  Aligned_cols=96  Identities=14%  Similarity=0.167  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHhc-CCCccc-ceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc-hHHHHHHHHHHHhchhhcCCCCCce
Q 044022           14 GSCINNITYAAQM-SHNHIL-KRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL-PRLKIASDIVNSLAYLHFGFPRPIV   90 (241)
Q Consensus        14 ~~~~~e~~~l~~l-~h~~iv-~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-~~~~~~~~i~~~l~~lh~~~~~~iv   90 (241)
                      -+..+|+..|+.| .|..=| +.++    .+..|+|||++.|-.|.+.-+-..+ +...-   +..-+--|.   .+|++
T Consensus       155 laa~kEfafmkaL~e~gfpVPkpiD----~~RH~Vvmelv~g~Pl~~v~~v~d~~~ly~~---lm~~Iv~la---~~GlI  224 (465)
T KOG2268|consen  155 LAATKEFAFMKALYERGFPVPKPID----HNRHCVVMELVDGYPLRQVRHVEDPPTLYDD---LMGLIVRLA---NHGLI  224 (465)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCccc----ccceeeHHHhhcccceeeeeecCChHHHHHH---HHHHHHHHH---HcCce
Confidence            3456788888888 343322 3333    3456899999988888765533222 22222   222222344   89999


Q ss_pred             eccCCCCCeeecCCCCeEEeeccCceecC
Q 044022           91 LRNFKTQNILFNEENVAKWFDFLLSISIP  119 (241)
Q Consensus        91 h~dl~~~nil~~~~~~~~l~df~~~~~~~  119 (241)
                      |+|.+-=||++..++.++++||-...+.+
T Consensus       225 HgDFNEFNimv~dd~~i~vIDFPQmvS~s  253 (465)
T KOG2268|consen  225 HGDFNEFNIMVKDDDKIVVIDFPQMVSTS  253 (465)
T ss_pred             ecccchheeEEecCCCEEEeechHhhccC
Confidence            99999999999999999999997665443

>PLN02421 phosphotransferase, alcohol group as acceptor/kinase

Probab=95.47  E-value=0.053  Score=44.72  Aligned_cols=30  Identities=20%  Similarity=0.316  Sum_probs=25.4

Q ss_pred             CceeccCCCCCeeecC-CCCeEEeeccCcee
Q 044022           88 PIVLRNFKTQNILFNE-ENVAKWFDFLLSIS  117 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~-~~~~~l~df~~~~~  117 (241)
                      -+.|.|+.+.||+++. ++.++++||+.+..
T Consensus       183 v~CHnDl~~~NiL~~~~~~~l~lID~EYag~  213 (330)
T PLN02421        183 VFAHNDLLSGNLMLNEDEGKLYFIDFEYGSY  213 (330)
T ss_pred             EEEECCCCcccEEEeCCCCcEEEEcccccCC
Confidence            3689999999999975 57899999988753

>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2

Probab=95.46  E-value=0.091  Score=39.92  Aligned_cols=86  Identities=23%  Similarity=0.223  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHhcC---CCcc--cceeeeeeeC------------------CcceEEEEecCCCCHHHhhcCCCchHHH
Q 044022           13 YGSCINNITYAAQMS---HNHI--LKRIGCCLQT------------------PIPILVFQSVEYGTLRDCIFGAPLPRLK   69 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~---h~~i--v~~~~~~~~~------------------~~~~lv~e~~~~~sL~~~l~~~~~~~~~   69 (241)
                      ..-|..|.+...+|+   +.++  |+++||..-.                  ..+.||.||.+...         ....+
T Consensus        98 ~~PF~~ECRAfgRLke~~~e~~~Avkc~Gyl~L~~~~q~~~~~~~~~~~~~~~~~aIVKD~v~~~~---------~~~~~  168 (207)
T PF13095_consen   98 ADPFNCECRAFGRLKEAGREGLWAVKCHGYLLLTEDQQFEQLRQRGSDHRPLPIRAIVKDFVPDDP---------PLQIR  168 (207)
T ss_pred             cChHHHHHHhhHHHHhccccCceEEEeeEEEEEchHHHHHHhhcccccCCCCccEEEEEeecCCcc---------ccchh
Confidence            346888988888884   3466  8999998522                  13457777765433         12334


Q ss_pred             HHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCc
Q 044022           70 IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLS  115 (241)
Q Consensus        70 ~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~  115 (241)
                      -+.+|.+-+..+|   ..||+-+|+++.|..     .-+|+|||.+
T Consensus       169 ~~~~~~~dl~~~~---k~gI~~~Dv~~~ny~-----~G~lvDfs~~  206 (207)
T PF13095_consen  169 DIPQMLRDLKILH---KLGIVPRDVKPRNYR-----GGKLVDFSSS  206 (207)
T ss_pred             HHHHHHHHHHHHH---HCCeeeccCcccccc-----CCEEEecccC
Confidence            5667888889999   999999999999987     3488999754

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=95.29  E-value=0.11  Score=38.67  Aligned_cols=96  Identities=6%  Similarity=-0.045  Sum_probs=62.2

Q ss_pred             cHHHHHHHHHHHHhcCCCcccc-eeeeeeeCCcceEEEEecCCCCHHHhhcCCCchHHHHHHHHHHHhchhhcCCCCCce
Q 044022           12 TYGSCINNITYAAQMSHNHILK-RIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDIVNSLAYLHFGFPRPIV   90 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~-~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~i~~~l~~lh~~~~~~iv   90 (241)
                      -...+..|+++|..+.-.++.+ ++.+-  .  -.+.|||..|.+|...-......   -+..+++..--|-   ..||-
T Consensus        58 ~r~~l~kEakiLeil~g~~~~p~vy~yg--~--~~i~me~i~G~~L~~~~~~~~rk---~l~~vlE~a~~LD---~~GI~  127 (201)
T COG2112          58 PRRNLEKEAKILEILAGEGVTPEVYFYG--E--DFIRMEYIDGRPLGKLEIGGDRK---HLLRVLEKAYKLD---RLGIE  127 (201)
T ss_pred             chhhHHHHHHHHHHhhhcCCCceEEEec--h--hhhhhhhhcCcchhhhhhcccHH---HHHHHHHHHHHHH---Hhccc
Confidence            3567889999999998766654 44442  2  23459999988888765543222   2223333333344   67788


Q ss_pred             eccCC-CCCeeecCCCCeEEeeccCcee
Q 044022           91 LRNFK-TQNILFNEENVAKWFDFLLSIS  117 (241)
Q Consensus        91 h~dl~-~~nil~~~~~~~~l~df~~~~~  117 (241)
                      |+.|+ |...++..++.+.|+||..+..
T Consensus       128 H~El~~~~k~vlv~~~~~~iIDFd~At~  155 (201)
T COG2112         128 HGELSRPWKNVLVNDRDVYIIDFDSATF  155 (201)
T ss_pred             hhhhcCCceeEEecCCcEEEEEccchhh
Confidence            88886 4555555566899999988763

>PF07387 Seadorna_VP7: Seadornavirus VP7; InterPro: IPR009973 This family consists of several Seadornavirus specific VP7 proteins of around 305 residues in length

Probab=93.88  E-value=0.053  Score=41.85  Aligned_cols=74  Identities=16%  Similarity=0.165  Sum_probs=48.9

Q ss_pred             HHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhH
Q 044022           75 VNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVF  154 (241)
Q Consensus        75 ~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~  154 (241)
                      +.+|.-.|++ ..+.+|+|..|+||+-|+.|-+||.|-+....-              +.-|.--|+   ...++++++-
T Consensus       151 i~~L~~fH~~-~~~~lHGD~np~NiM~D~~G~lKlVDP~~Ll~~--------------~V~~vN~~Y---~~lT~~aE~~  212 (308)
T PF07387_consen  151 IKDLMDFHSE-NQHCLHGDCNPDNIMCDKFGYLKLVDPVCLLEN--------------QVNMVNIEY---ESLTQEAEVK  212 (308)
T ss_pred             HHHHHHhhcc-CCCeecCCCChhheeecCCCCEEecChhhhhhh--------------eeeEEeeec---cccChHHHHH
Confidence            3566777854 677999999999999999999999996544210              000111111   2345677777


Q ss_pred             HHHHHHHHHHhc
Q 044022          155 SFGAFLFELLAG  166 (241)
Q Consensus       155 s~G~~~~~~~~g  166 (241)
                      +|-.-+++++..
T Consensus       213 ~fv~s~l~~v~~  224 (308)
T PF07387_consen  213 VFVKSCLKLVEK  224 (308)
T ss_pred             HHHHHHHHHHHH
Confidence            776666676664

The function of this family is unknown.

>PRK05231 homoserine kinase; Provisional

Probab=93.86  E-value=0.049  Score=44.54  Aligned_cols=32  Identities=22%  Similarity=0.605  Sum_probs=27.2

Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCcee
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSIS  117 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~  117 (241)
                      ..+++|+|+.+.||+++.+....|+||+.+..
T Consensus       186 p~~liHgD~~~~Nil~~~~~~~~iIDf~~~~~  217 (319)
T PRK05231        186 PRGVIHADLFRDNVLFEGDRLSGFIDFYFACN  217 (319)
T ss_pred             CcccCCCCCCCCcEEEECCceEEEEecccccC
Confidence            56899999999999999766668999988743

>PF03881 Fructosamin_kin: Fructosamine kinase; InterPro: IPR016477 Ketosamines derive from a non-enzymatic reaction between a sugar and a protein []

Probab=93.42  E-value=0.16  Score=40.95  Aligned_cols=44  Identities=11%  Similarity=0.032  Sum_probs=28.2

Q ss_pred             ccHHHHHHHHHHHHhcC--C-CcccceeeeeeeCCcceEEEEecCCC
Q 044022           11 HTYGSCINNITYAAQMS--H-NHILKRIGCCLQTPIPILVFQSVEYG   54 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~--h-~~iv~~~~~~~~~~~~~lv~e~~~~~   54 (241)
                      ....-|..|..-|+.|.  . -.+.+++++....+..++|+||++.+
T Consensus        51 ~~~~~f~~Ea~gL~~L~~~~~~~vP~vi~~G~~~~~~fLlle~l~~~   97 (288)
T PF03881_consen   51 SGRDMFEGEAEGLKALAEANPIRVPKVIAWGEYDDDAFLLLEFLEMG   97 (288)
T ss_dssp             GGCCHHHHHHHHHHHHCHTTTSBS--EEEEEE-SSCCEEEEE-----
T ss_pred             hhHHHHHHHHHHHHHHHhcCCCCCCeEEEEEeecCCceEEEEeecCC
Confidence            34566889999999993  3 35668888887777789999998765

Ketosamine-3-kinases (KT3K), of which fructosamine-3-kinase (FN3K) is the best-known example, catalyse the phosphorylation of the ketosamine moiety of glycated proteins. The instability of a phosphorylated ketosamine leads to its degradation, and KT3K is thus thought to be involved in protein repair []. The function of the prokaryotic members of this group has not been established. However, several lines of evidence indicate that they may function as fructosamine-3-kinases (FN3K). First, they are similar to characterised FN3K from mouse and human. Second, the Escherichia coli members are found in close proximity on the genome to fructose-6-phosphate kinase (PfkB). Last, FN3K activity has been found in a Anacystis montana (Gloeocapsa montana Kutzing 1843) [], indicating such activity-directly demonstrated in eukaryotes-is nonetheless not confined to eukaryotes. This family includes eukaryotic fructosamine-3-kinase enzymes [] which may initiate a process leading to the deglycation of fructoselysine and of glycated proteins and in the phosphorylation of 1-deoxy-1-morpholinofructose, fructoselysine, fructoseglycine, fructose and glycated lysozyme. The family also includes bacterial members that have not been characterised but probably have a similar or identical function. For additional information please see [].; PDB: 3JR1_B 3F7W_A.

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=93.35  E-value=0.079  Score=41.18  Aligned_cols=31  Identities=26%  Similarity=0.474  Sum_probs=26.6

Q ss_pred             CCCceeccCCCCCeeecC-CCCeEEeeccCce
Q 044022           86 PRPIVLRNFKTQNILFNE-ENVAKWFDFLLSI  116 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~-~~~~~l~df~~~~  116 (241)
                      ...++|+|+.+.||+++. ++.+.++||..+.
T Consensus       169 ~~~l~H~Dl~~~Nil~~~~~~~~~lIDwe~a~  200 (235)
T cd05157         169 PIVFCHNDLLSGNIIYNEEKNSVKFIDYEYAG  200 (235)
T ss_pred             CEEEEcCCCCcCcEEEeCCCCCEEEEEcccCC
Confidence            346899999999999998 5789999998763

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=93.34  E-value=0.078  Score=42.98  Aligned_cols=31  Identities=19%  Similarity=0.256  Sum_probs=27.0

Q ss_pred             CCCceeccCCCCCeeecCC----CCeEEeeccCce
Q 044022           86 PRPIVLRNFKTQNILFNEE----NVAKWFDFLLSI  116 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~----~~~~l~df~~~~  116 (241)
                      ...++|+|+.+.||+++.+    +.+.++||..+.
T Consensus       178 ~~~lcH~Dl~~~Nil~~~~~~~~~~i~lIDwEya~  212 (302)
T cd05156         178 PVVFCHNDLQEGNILLLNPSSETKKLVLIDFEYAS  212 (302)
T ss_pred             CceEEecCCCcCeEEecCCCCCCCcEEEEeeCCCC
Confidence            5568999999999999985    889999998773

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>PTZ00384 choline kinase; Provisional

Probab=93.30  E-value=0.47  Score=39.99  Aligned_cols=29  Identities=17%  Similarity=0.052  Sum_probs=23.7

Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCce
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSI  116 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~  116 (241)
                      ....|.|+-+.||+.+. +.+.++||..+.
T Consensus       227 ~VfCHNDL~~gNIL~~~-~~l~lID~EYA~  255 (383)
T PTZ00384        227 VLFCHNDLFFTNILDFN-QGIYFIDFDFAG  255 (383)
T ss_pred             eeeeeccCCcccEEecC-CCEEEEEecccc
Confidence            45689999999998754 568999998774

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=93.29  E-value=0.072  Score=43.37  Aligned_cols=31  Identities=26%  Similarity=0.573  Sum_probs=27.5

Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCce
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSI  116 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~  116 (241)
                      ..+++|+|+.+.|++++.++.+.|+||+.+.
T Consensus       186 ~~~l~HgD~~~~Nvl~~~~~~~~vIDfd~~~  216 (307)
T TIGR00938       186 PRGVIHADLFPDNVLFDGDSVKGVIDFYFAC  216 (307)
T ss_pred             CCccCCCCCCcCcEEEECCceEEEeeccccc
Confidence            5789999999999999988877899998774

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2

Probab=92.32  E-value=0.094  Score=40.14  Aligned_cols=30  Identities=23%  Similarity=0.308  Sum_probs=21.0

Q ss_pred             CCceeccCCCCCeee-cCCCCeEEeeccCce
Q 044022           87 RPIVLRNFKTQNILF-NEENVAKWFDFLLSI  116 (241)
Q Consensus        87 ~~ivh~dl~~~nil~-~~~~~~~l~df~~~~  116 (241)
                      ..+.|+|+.+.||++ +.++.++++||..+.
T Consensus       143 ~v~cHnDl~~~Nil~~~~~~~~~lIDfEya~  173 (211)
T PF01633_consen  143 LVFCHNDLNPGNILINNKDGEVKLIDFEYAG  173 (211)
T ss_dssp             EEEE-S--SGGGEEETSSSSCEEE--GTT-E
T ss_pred             ceEeeccCccccEEeccCCCeEEEecHHHHh
Confidence            357899999999999 888999999998774

7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....

>PRK10271 thiK thiamine kinase; Provisional

Probab=92.22  E-value=0.14  Score=38.50  Aligned_cols=30  Identities=7%  Similarity=0.118  Sum_probs=25.4

Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCcee
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSIS  117 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~  117 (241)
                      ...+|+|+.|.|++++.++ ++++||+.+..
T Consensus        77 ~~p~H~D~~~~N~~~~~~~-~~lIDwe~a~~  106 (188)
T PRK10271         77 LAPLHMDVHAGNLVHSASG-LRLIDWEYAGD  106 (188)
T ss_pred             eeeecCCCCCccEEEECCC-EEEEeCCcccC
Confidence            3468999999999998777 88999998753

>COG0510 ycfN Thiamine kinase and related kinases [Coenzyme transport and metabolism]

Probab=92.19  E-value=0.25  Score=39.44  Aligned_cols=46  Identities=9%  Similarity=0.058  Sum_probs=34.7

Q ss_pred             HHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCce
Q 044022           70 IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSI  116 (241)
Q Consensus        70 ~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~  116 (241)
                      .+..+-.++.-.+.. ..-++|+|+.|.|++.+..+.+.|+||..+.
T Consensus       137 ~~~~l~~~l~~~~~~-~~v~cH~Dl~~~N~l~t~~~~l~LIDWEyAg  182 (269)
T COG0510         137 KLKELRRALEEVPKD-DLVPCHNDLNPGNLLLTDKGGLFLIDWEYAG  182 (269)
T ss_pred             HHHHHHHHhhhcCCC-ceeeecCCCCccceEEcCCCcEEEEecccCC
Confidence            344455555555521 1358999999999999999999999998774

>TIGR02906 spore_CotS spore coat protein, CotS family

Probab=91.28  E-value=0.19  Score=40.84  Aligned_cols=30  Identities=23%  Similarity=0.336  Sum_probs=25.7

Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCce
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSI  116 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~  116 (241)
                      ..+++|+|+.+.|++++. +.+.++||+.+.
T Consensus       186 ~~~liHgD~~~~Nil~~~-~~i~lIDfd~~~  215 (313)
T TIGR02906       186 IRGFCHQDYAYHNILLKD-NEVYVIDFDYCT  215 (313)
T ss_pred             cCceEcCCCCcccEEEeC-CcEEEEECcccc
Confidence            467899999999999987 678899998664

Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.

>COG3001 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.15  E-value=1.7  Score=33.97  Aligned_cols=55  Identities=15%  Similarity=0.138  Sum_probs=39.4

Q ss_pred             ccccccccccHHHHHHHHHHHHhcCC---CcccceeeeeeeCCcceEEEEecCCCCHH
Q 044022            3 FYGHEYHRHTYGSCINNITYAAQMSH---NHILKRIGCCLQTPIPILVFQSVEYGTLR   57 (241)
Q Consensus         3 ~~~~~~~~~~~~~~~~e~~~l~~l~h---~~iv~~~~~~~~~~~~~lv~e~~~~~sL~   57 (241)
                      +|.+...+....-|..|+.-|..|.-   -++.+++.+-...++.++|+||++.+.+.
T Consensus        42 ~FvK~n~~~~~~~f~AEa~gL~~la~s~ti~VP~vi~~G~~~~~sylVle~L~~~~~d   99 (286)
T COG3001          42 FFVKCNQREQLSMFTAEADGLELLARSNTITVPKVIAVGASRDHSYLVLEYLPTGPLD   99 (286)
T ss_pred             eEEEecchhhHHHHHHHHHHHHHHHhcCCccccceEEecCCCCeeEEEEeeccCCCCC
Confidence            34444444555678889998888843   34567777777788999999999876654

>PRK10593 hypothetical protein; Provisional

Probab=91.13  E-value=0.53  Score=38.19  Aligned_cols=69  Identities=12%  Similarity=0.103  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHhcCC---Ccccceeeeeee---CCcceEEEEecCCCCHHHhhcCCCchHHHHHHHHHHHhchhh
Q 044022           13 YGSCINNITYAAQMSH---NHILKRIGCCLQ---TPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDIVNSLAYLH   82 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h---~~iv~~~~~~~~---~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~i~~~l~~lh   82 (241)
                      ...|.+|...|+.|.-   -.+.++++++..   .+..++|||+++++++.+. ...+.....+...++.+++-||
T Consensus        51 ~~~~~~Ea~~L~~L~~~~~vpVP~V~~~~~~~~~~g~~~LVmE~i~G~~~~~~-~~~~~~~~~l~~~l~~~La~LH  125 (297)
T PRK10593         51 PGVAQQEAWKLSMLARSGTVRMPTVYGVMTHEQSPGPDVLLLERLRGVSVEAP-ARTPERWEQLKDQIVEGLLAWH  125 (297)
T ss_pred             chHHHHHHHHHHHHccCCCCCcCcEEEEeccCCcCCCeEEEEeccCCEecCCC-CCCHHHHHHHHHHHHHHHHHHh
Confidence            3578899999999943   356788887754   3568999999998887652 1111123445566677777777

>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]

Probab=91.09  E-value=0.48  Score=39.04  Aligned_cols=28  Identities=21%  Similarity=0.453  Sum_probs=25.4

Q ss_pred             ceeccCCCCCeeecCCCC-eEEeeccCce
Q 044022           89 IVLRNFKTQNILFNEENV-AKWFDFLLSI  116 (241)
Q Consensus        89 ivh~dl~~~nil~~~~~~-~~l~df~~~~  116 (241)
                      ++|+|+.|.||+++.+.. +.++||+-+.
T Consensus       199 iIH~D~~~~NVl~d~~~~~~g~iDFdDa~  227 (331)
T COG2334         199 IIHGDLHPDNVLFDDDTDVSGFIDFDDAG  227 (331)
T ss_pred             eeecCCCccceeEcCCCCeeeEEEccccc
Confidence            999999999999999884 8999998774

>smart00587 CHK ZnF_C4 abd HLH domain containing kinases domain

Probab=90.74  E-value=0.25  Score=37.43  Aligned_cols=31  Identities=23%  Similarity=0.283  Sum_probs=25.2

Q ss_pred             CCCceeccCCCCCeeecCCC-----CeEEeeccCce
Q 044022           86 PRPIVLRNFKTQNILFNEEN-----VAKWFDFLLSI  116 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~-----~~~l~df~~~~  116 (241)
                      ...++|||+.+.|+++..++     .+.++||..+.
T Consensus       119 ~~vl~HgD~~~~N~~~~~~~~~~~~~~~liDfq~~~  154 (196)
T smart00587      119 FNVLNHGDLWANNIMFKYDDEGKPEDVALIDFQLSH  154 (196)
T ss_pred             ceEEeeCCCCccceeeccCCCCCccceEEEecccCC
Confidence            45689999999999997553     57899997764

subfamily of choline kinases

>TIGR02904 spore_ysxE spore coat protein YsxE

Probab=89.79  E-value=0.2  Score=40.88  Aligned_cols=31  Identities=13%  Similarity=0.247  Sum_probs=27.7

Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCce
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSI  116 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~  116 (241)
                      ..+++|+|+.+.|++++.++.+.++||..+.
T Consensus       195 ~~~lcHgD~~~~Nvl~~~~~~~~iIDfd~~~  225 (309)
T TIGR02904       195 RTVLVHGKLSLSHFLYDETRGGYFINFEKAS  225 (309)
T ss_pred             ceeeeCCCCcHHhEEEcCCCCEEEEEhhhcc
Confidence            4579999999999999999999999998764

Members of this family are homologs of the Bacillus subtilis spore coat protein CotS. Members of this family, designated YsxE, are found only in the family Bacillaceae, from among the endospore-forming members of the Firmicutes branch of the Bacteria. As a rule, the ysxE gene is found immediately downstream of spoVID, a gene necessary for spore coat assembly. The protein has been shown to be part of the spore coat.

>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2')

Probab=89.74  E-value=0.27  Score=39.49  Aligned_cols=30  Identities=17%  Similarity=0.275  Sum_probs=24.5

Q ss_pred             CCceeccCCCCCeeecCCCC-eEEeeccCce
Q 044022           87 RPIVLRNFKTQNILFNEENV-AKWFDFLLSI  116 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~-~~l~df~~~~  116 (241)
                      ..++|+|+.+.|++++.++. .-|+||+.+.
T Consensus       185 ~~lvHGD~~~~Nilv~~~~~~~gviDWe~a~  215 (276)
T cd05152         185 TVLVHGDLHPGHILIDEDARVTGLIDWTEAK  215 (276)
T ss_pred             CeeEeCCCCCCcEEEeCCCCEEEEECcHhcc
Confidence            45899999999999997554 5699998763

MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported

>COG4499 Predicted membrane protein [Function unknown]

Probab=87.34  E-value=7.9  Score=32.30  Aligned_cols=123  Identities=15%  Similarity=0.143  Sum_probs=72.4

Q ss_pred             HHHHHHhcCCCcccceeeeeeeCCcceEEEEecCC-CCHHHhhcCCCchHHHHHHHHHHHhchhhcCCCCCceeccCCCC
Q 044022           19 NITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEY-GTLRDCIFGAPLPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQ   97 (241)
Q Consensus        19 e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-~sL~~~l~~~~~~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~   97 (241)
                      ++.++.+ ..|+++.-+..  .++.+.|-++-... .++...-.......++++.+.+..|.-+-    +.-.|-=+.|+
T Consensus        41 ~~~lld~-~~~f~~~eit~--~~Ds~vIsy~i~~~~~~F~~~k~~~k~~Klr~a~~~I~~l~e~~----~tr~~~~laPe  113 (434)
T COG4499          41 LAELLDK-SPPFIVAEITE--DNDSFVISYPIPEAAKSFASAKRKEKTRKLRLALQNIATLSELN----NTRYTFFLAPE  113 (434)
T ss_pred             HHHHhcc-CCCccceeecc--cCceeEEEecCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhh----ccceeEEecch
Confidence            4555555 34455444322  34444455444322 23333222223345676777777766543    44567778899


Q ss_pred             CeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhH-HHHHHHHHHHhcCcccccc
Q 044022           98 NILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVF-SFGAFLFELLAGRIHIWDL  173 (241)
Q Consensus        98 nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~-s~G~~~~~~~~g~~p~~~~  173 (241)
                      ||+++.++.+.+..+|+-..+++              .=+.||           +.| .+-+++..++.|+.+|...
T Consensus       114 Nilf~~~l~p~~vH~Glk~~lpP--------------ye~tee-----------~f~~~ykA~~~~~fn~k~~Fe~l  165 (434)
T COG4499         114 NILFDGGLTPFFVHRGLKNSLPP--------------YEMTEE-----------RFLKEYKALAIYAFNGKFSFESL  165 (434)
T ss_pred             heEEcCCCceEEEecchhccCCC--------------CCCCHH-----------HHHHHHHHHHHHHHcCCccHHHH
Confidence            99999999999999987644321              113333           344 5667777888899888653

>PRK06148 hypothetical protein; Provisional

Probab=86.99  E-value=0.6  Score=44.56  Aligned_cols=32  Identities=19%  Similarity=0.346  Sum_probs=26.5

Q ss_pred             CCCceeccCCCCCeeecCCC--Ce-EEeeccCcee
Q 044022           86 PRPIVLRNFKTQNILFNEEN--VA-KWFDFLLSIS  117 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~--~~-~l~df~~~~~  117 (241)
                      ..+++|+|+.+.||+++.++  .+ -|+|||-+..
T Consensus       202 p~~vIHgDln~~NiLv~~~~~~~isGiIDFgDa~~  236 (1013)
T PRK06148        202 PAQVIHNDANDYNILVDADDGERISGLIDFGDAVH  236 (1013)
T ss_pred             CcceECCCCCcccEEEcCCCCcceEEEEECccccc
Confidence            56799999999999999875  44 4999998754

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=85.80  E-value=1.4  Score=37.44  Aligned_cols=31  Identities=19%  Similarity=0.263  Sum_probs=26.2

Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCcee
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSIS  117 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~  117 (241)
                      ...++|||+.+.||++..+ .++++||.++..
T Consensus       222 ~~~l~HgDl~~gni~~~~~-~~~viD~E~a~~  252 (401)
T PRK09550        222 AEALLHGDLHTGSIFVTEE-ETKVIDPEFAFY  252 (401)
T ss_pred             CCceeeccCCcccEEeeCC-CcEEEecccccc
Confidence            5569999999999999776 589999987753

>KOG4720 consensus Ethanolamine kinase [Lipid transport and metabolism]

Probab=85.40  E-value=3.3  Score=33.60  Aligned_cols=38  Identities=18%  Similarity=0.146  Sum_probs=28.9

Q ss_pred             HHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHH
Q 044022           17 INNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRD   58 (241)
Q Consensus        17 ~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~   58 (241)
                      .+|+...+.| .|..-.++++.|.++    +|+||++|.+|..
T Consensus       126 e~Ev~afk~L~a~G~ap~Ly~tF~NG----Lvyefi~g~tL~p  164 (391)
T KOG4720|consen  126 ENEVIAFKLLAAYGFAPKLYGTFNNG----LVYEFIQGKTLEP  164 (391)
T ss_pred             HHHHHHHHHHHHcCcChhhhheecCc----eEEeeecCcccCh
Confidence            3577777777 577788899988544    7999999888743

>PHA03111 Ser/Thr kinase; Provisional

Probab=85.35  E-value=1.7  Score=35.85  Aligned_cols=37  Identities=16%  Similarity=0.127  Sum_probs=22.9

Q ss_pred             HHHHHHHHHhchh-hcCCCCCceeccCCCCCeeecCCC
Q 044022           69 KIASDIVNSLAYL-HFGFPRPIVLRNFKTQNILFNEEN  105 (241)
Q Consensus        69 ~~~~~i~~~l~~l-h~~~~~~ivh~dl~~~nil~~~~~  105 (241)
                      .+..|++.-.-.. ...+-...+|-||||.|||+....
T Consensus       283 fifLQiaLLyikIYelp~c~nF~H~DLKPdNILiFds~  320 (444)
T PHA03111        283 FIFLQIALLYIKIYELPCCDNFLHVDLKPDNILIFDSD  320 (444)
T ss_pred             HHHHHHHHHHHhhhcCCCcceeeeccCCCCcEEEecCC
Confidence            3455665443222 222234589999999999996554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	241
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		2e-19
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		7e-19
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		1e-18
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		8e-18
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		6e-12
1o6y_A	299	Catalytic Domain Of Pknb Kinase From Mycobacterium		5e-11
3f61_A	311	Crystal Structure Of M. Tuberculosis Pknb Leu33aspV		6e-11
3ori_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain L33d		6e-11
1mru_A	311	Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycob		7e-11
3orm_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain D76a		7e-11
3f69_A	311	Crystal Structure Of The Mycobacterium Tuberculosis		1e-10
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		1e-10
4e1z_A	291	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		2e-10
4e20_A	290	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		2e-10
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		3e-10
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		5e-10
2eva_A	307	Structural Basis For The Interaction Of Tak1 Kinase		6e-10
4gs6_A	315	Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxoz		6e-10
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		7e-10
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		8e-10
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		9e-10
3lxn_A	318	Structural And Thermodynamic Characterization Of Th		2e-09
3nz0_A	302	Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 3		3e-09
3nyx_A	302	Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-T		3e-09
4eqm_A	294	Structural Analysis Of Staphylococcus Aureus Serine		1e-08
3ggf_A	301	Crystal Structure Of Human SerineTHREONINE-Protein		2e-08
3s95_A	310	Crystal Structure Of The Human Limk1 Kinase Domain		4e-08
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		7e-08
1fot_A	318	Structure Of The Unliganded Camp-Dependent Protein		9e-08
3a7f_A	303	Human Mst3 Kinase Length = 303		1e-07
1sm2_A	264	Crystal Structure Of The Phosphorylated Interleukin		1e-07
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		1e-07
3v5j_A	266	Crystal Structure Of Interleukin-2 Inducible T-Cell		1e-07
3ckx_A	304	Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3		1e-07
3qgw_A	286	Crystal Structure Of Itk Kinase Bound To An Inhibit		1e-07
3ckw_A	304	Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3		1e-07
3zhp_C	294	Human Mst3 (stk24) In Complex With Mo25beta Length		2e-07
2xik_A	294	Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related K		3e-07
3t9t_A	267	Crystal Structure Of Btk Mutant (F435t,K596r) Compl		1e-06
3txo_A	353	Pkc Eta Kinase In Complex With A Naphthyridine Leng		1e-06
4bbe_A	298	Aminoalkylpyrimidine Inhibitor Complexes With Jak2		2e-06
3d7t_A	269	Structural Basis For The Recognition Of C-Src By It		2e-06
1omw_A	689	Crystal Structure Of The Complex Between G Protein-		3e-06
3psc_A	695	Bovine Grk2 In Complex With Gbetagamma Subunits Len		3e-06
3og7_A	289	B-Raf Kinase V600e Oncogenic Mutant In Complex With		3e-06
3krw_A	688	Human Grk2 In Complex With Gbetgamma Subunits And B		3e-06
3cik_A	689	Human Grk2 In Complex With Gbetagamma Subunits Leng		3e-06
4fk3_A	292	B-Raf Kinase V600e Oncogenic Mutant In Complex With		3e-06
3nyn_A	576	Crystal Structure Of G Protein-Coupled Receptor Kin		3e-06
3pwy_A	311	Crystal Structure Of An Extender (Spd28345)-Modifie		3e-06
4gt5_A	306	Crystal Structure Of The Inactive Trka Kinase Domai		4e-06
4f0i_A	300	Crystal Structure Of Apo Trka Length = 300		4e-06
4aoj_A	329	Human Trka In Complex With The Inhibitor Az-23 Leng		4e-06
2acx_A	576	Crystal Structure Of G Protein Coupled Receptor Kin		4e-06
3c4c_A	280	B-Raf Kinase In Complex With Plx4720 Length = 280		5e-06
2xa4_A	298	Inhibitors Of Jak2 Kinase Domain Length = 298		5e-06
3gvu_A	292	The Crystal Structure Of Human Abl2 In Complex With		5e-06
3qc9_A	543	Crystal Structure Of Cross-Linked Bovine Grk1 T8cN4		5e-06
3c4x_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		5e-06
1opk_A	495	Structural Basis For The Auto-Inhibition Of C-Abl T		5e-06
3t8o_A	543	Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolu		6e-06
3c4w_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		6e-06
1k9a_A	450	Crystal Structure Analysis Of Full-Length Carboxyl-		7e-06
2b7a_A	293	The Structural Basis Of Janus Kinase 2 Inhibition B		7e-06
3e62_A	293	Fragment Based Discovery Of Jak-2 Inhibitors Length		7e-06
3tjc_A	298	Co-Crystal Structure Of Jak2 With Thienopyridine 8		7e-06
4a07_A	311	Human Pdk1 Kinase Domain In Complex With Allosteric		7e-06
3q32_A	301	Structure Of Janus Kinase 2 With A Pyrrolotriazine		7e-06
1byg_A	278	Kinase Domain Of Human C-Terminal Src Kinase (Csk)		7e-06
4hge_A	300	Jak2 Kinase (Jh1 Domain) In Complex With Compound 8		7e-06
3mpm_A	267	Lck Complexed With A Pyrazolopyrimidine Length = 26		7e-06
2z60_A	288	Crystal Structure Of The T315i Mutant Of Abl Kinase		7e-06
4e4m_A	302	Jak2 Kinase (Jh1 Domain) In Complex With Compound 3		7e-06
3oy3_A	284	Crystal Structure Of Abl T315i Mutant Kinase Domain		7e-06
4aqc_A	301	Triazolopyridine-Based Inhibitor Of Janus Kinase 2		8e-06
3rvg_A	303	Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido		8e-06
3jy9_A	311	Janus Kinase 2 Inhibitors Length = 311		8e-06
3lpb_A	295	Crystal Structure Of Jak2 Complexed With A Potent 2		8e-06
3d7u_A	263	Structural Basis For The Recognition Of C-Src By It		8e-06
2w1i_A	326	Structure Determination Of Aurora Kinase In Complex		8e-06
3io7_A	313	2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Sel		9e-06
3ugc_A	295	Structural Basis Of Jak2 Inhibition By The Type Ii		9e-06
2w4o_A	349	Crystal Structure Of Human Camk4 In Complex With 4-		1e-05
1opl_A	537	Structural Basis For The Auto-Inhibition Of C-Abl T		1e-05
3orx_A	316	Pdk1 Mutant Bound To Allosteric Disulfide Fragment		1e-05
2fo0_A	495	Organization Of The Sh3-Sh2 Unit In Active And Inac		1e-05
3oxz_A	284	Crystal Structure Of Abl Kinase Domain Bound With A		1e-05
2r7b_A	312	Crystal Structure Of The Phosphoinositide-Dependent		1e-05
3h9o_A	311	Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1)		1e-05
2xch_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		1e-05
2qoh_A	288	Crystal Structure Of Abl Kinase Bound With Ppy-a Le		1e-05
3sc1_A	311	Novel Isoquinolone Pdk1 Inhibitors Discovered Throu		1e-05
3iop_A	312	Pdk-1 In Complex With The Inhibitor Compound-8i Len		1e-05
2xck_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		1e-05
1uu3_A	310	Structure Of Human Pdk1 Kinase Domain In Complex Wi		1e-05
3rwp_A	311	Discovery Of A Novel, Potent And Selective Inhibito		1e-05
3qc4_A	314	Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length =		1e-05
3qrj_A	277	The Crystal Structure Of Human Abl1 Kinase Domain T		1e-05
3nus_A	286	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fra		1e-05
1fpu_A	293	Crystal Structure Of Abl Kinase Domain In Complex W		1e-05
1uu9_A	286	Structure Of Human Pdk1 Kinase Domain In Complex Wi		1e-05
3hrc_A	311	Crystal Structure Of A Mutant Of Human Pdk1 Kinase		1e-05
1z5m_A	286	Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrr		1e-05
2biy_A	310	Structure Of Pdk1-S241a Mutant Kinase Domain Length		1e-05
1h1w_A	289	High Resolution Crystal Structure Of The Human Pdk1		1e-05
1qpd_A	279	Structural Analysis Of The Lymphocyte-specific Kina		1e-05
3lck_A	271	The Kinase Domain Of Human Lymphocyte Kinase (Lck),		1e-05
3bym_A	272	X-Ray Co-Crystal Structure Aminobenzimidazole Triaz		1e-05
3nun_A	292	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lea		1e-05
3nax_A	311	Pdk1 In Complex With Inhibitor Mp7 Length = 311		1e-05
3nay_A	311	Pdk1 In Complex With Inhibitor Mp6 Length = 311		1e-05
2ofu_A	273	X-Ray Crystal Structure Of 2-Aminopyrimidine Carbam		1e-05
1qcf_A	454	Crystal Structure Of Hck In Complex With A Src Fami		1e-05
2hk5_A	270	Hck Kinase In Complex With Lck Targetted Inhibitor		1e-05
3dk7_A	277	Crystal Structure Of Mutant Abl Kinase Domain In Co		2e-05
3zgw_A	347	Crystal Structure Of Maternal Embryonic Leucine Zip		2e-05
1qpe_A	279	Structural Analysis Of The Lymphocyte-Specific Kina		2e-05
2og8_A	265	Crystal Structure Of Aminoquinazoline 36 Bound To L		2e-05
2of2_A	271	Crystal Structure Of Furanopyrimidine 8 Bound To Lc		2e-05
2f4j_A	287	Structure Of The Kinase Domain Of An Imatinib-Resis		2e-05
2g2f_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		2e-05
3kmm_A	288	Structure Of Human Lck Kinase With A Small Molecule		2e-05
3cd3_A	377	Crystal Structure Of Phosphorylated Human Feline Sa		2e-05
3kxz_A	287	The Complex Crystal Structure Of Lck With A Probe M		2e-05
2zm1_A	285	Crystal Structure Of Imidazo Pyrazin 1 Bound To The		2e-05
2hz0_A	270	Abl Kinase Domain In Complex With Nvp-Aeg082 Length		2e-05
2hzi_A	277	Abl Kinase Domain In Complex With Pd180970 Length =		2e-05
2qlu_A	314	Crystal Structure Of Activin Receptor Type Ii Kinas		2e-05
2hyy_A	273	Human Abl Kinase Domain In Complex With Imatinib (S		2e-05
3bys_A	277	Co-Crystal Structure Of Lck And Aminopyrimidine Ami		2e-05
2ofv_A	277	Crystal Structure Of Aminoquinazoline 1 Bound To Lc		2e-05
2hiw_A	287	Crystal Structure Of Inactive Conformation Abl Kina		2e-05
3pyy_A	298	Discovery And Characterization Of A Cell-Permeable,		2e-05
3qri_A	277	The Crystal Structure Of Human Abl1 Kinase Domain I		2e-05
2g1t_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		2e-05
3q4t_A	322	Crystal Structure Of Activin Receptor Type-Iia (Acv		2e-05
2pl0_A	289	Lck Bound To Imatinib Length = 289		2e-05
2e2b_A	293	Crystal Structure Of The C-Abl Kinase Domain In Com		2e-05
3unz_A	279	Aurora A In Complex With Rpm1679 Length = 279		3e-05
3r21_A	271	Design, Synthesis, And Biological Evaluation Of Pyr		3e-05
3dk6_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		3e-05
3bkb_A	377	Crystal Structure Of Human Feline Sarcoma Viral Onc		3e-05
3q4z_A	306	Structure Of Unphosphorylated Pak1 Kinase Domain Le		3e-05
2v7a_A	286	Crystal Structure Of The T315i Abl Mutant In Comple		3e-05
2bmc_A	306	Aurora-2 T287d T288d Complexed With Pha-680632 Leng		3e-05
3dk3_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		3e-05
3idp_A	300	B-Raf V600e Kinase Domain In Complex With An Aminoi		3e-05
1uwj_A	276	The Complex Of Mutant V599e B-raf And Bay439006 Len		3e-05
4g9r_A	307	B-Raf V600e Kinase Domain Bound To A Type Ii Dihydr		3e-05
4e6d_A	298	Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex W		4e-05
3g51_A	325	Structural Diversity Of The Active Conformation Of		4e-05
3iw4_A	360	Crystal Structure Of Pkc Alpha In Complex With Nvp-		4e-05
3bea_A	333	Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A P		4e-05
3daj_A	272	Crystal Structure Of Aurora A Complexed With An Inh		4e-05
3ubd_A	304	Structure Of N-Terminal Domain Of Rsk2 Kinase In Co		4e-05
2gqg_A	278	X-Ray Crystal Structure Of Dasatinib (Bms-354825) B		4e-05
4el9_A	305	Structure Of N-Terminal Kinase Domain Of Rsk2 With		4e-05
3lcd_A	329	Inhibitor Bound To A Dfg-In Structure Of The Kinase		4e-05
2ogv_A	317	Crystal Structure Of The Autoinhibited Human C-Fms		4e-05
2i1m_A	333	Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An		5e-05
1s9i_A	354	X-Ray Structure Of The Human Mitogen-Activated Prot		5e-05
3kex_A	325	Crystal Structure Of The Catalytically Inactive Kin		5e-05
3lmg_A	344	Crystal Structure Of The Erbb3 Kinase Domain In Com		5e-05
4dbn_A	284	Crystal Structure Of The Kinase Domain Of Human B-R		5e-05
3c4f_A	302	Fgfr Tyrosine Kinase Domain In Complex With 3-(3- M		5e-05
3d4q_A	307	Pyrazole-Based Inhibitors Of B-Raf Kinase Length =		5e-05
3ii5_A	306	The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimi		5e-05
2jed_A	352	The Crystal Structure Of The Kinase Domain Of The P		5e-05
2j0j_A	656	Crystal Structure Of A Fragment Of Focal Adhesion K		5e-05
3q96_A	282	B-Raf Kinase Domain In Complex With A Tetrahydronap		5e-05
2fb8_A	281	Structure Of The B-Raf Kinase Domain Bound To Sb-59		5e-05
4h58_A	275	Braf In Complex With Compound 3 Length = 275		6e-05
1uwh_A	276	The Complex Of Wild Type B-Raf And Bay439006 Length		6e-05
3ekk_A	307	Insulin Receptor Kinase Complexed With An Inhibitor		6e-05
1mqb_A	333	Crystal Structure Of Ephrin A2 (Epha2) Receptor Pro		6e-05
3gql_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		6e-05
3kul_A	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		6e-05
1p14_A	306	Crystal Structure Of A Catalytic-Loop Mutant Of The		6e-05
3kxx_A	317	Structure Of The Mutant Fibroblast Growth Factor Re		6e-05
3com_A	314	Crystal Structure Of Mst1 Kinase Length = 314		6e-05
2jkk_A	276	Focal Adhesion Kinase Catalytic Domain In Complex W		7e-05
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		7e-05
2j0k_A	656	Crystal Structure Of A Fragment Of Focal Adhesion K		7e-05
1xjd_A	345	Crystal Structure Of Pkc-Theta Complexed With Staur		7e-05
2i0e_A	353	Structure Of Catalytic Domain Of Human Protein Kina		7e-05
2c6e_A	283	Aurora A Kinase Activated Mutant (T287d) In Complex		7e-05
3rhx_B	306	Crystal Structure Of The Catalytic Domain Of Fgfr1		7e-05
2c6d_A	275	Aurora A Kinase Activated Mutant (T287d) In Complex		7e-05
3bbt_B	328	Crystal Structure Of The Erbb4 Kinase In Complex Wi		7e-05
3lau_A	287	Crystal Structure Of Aurora2 Kinase In Complex With		8e-05
1fgk_A	310	Crystal Structure Of The Tyrosine Kinase Domain Of		8e-05
3js2_A	317	Crystal Structure Of Minimal Kinase Domain Of Fibro		8e-05
3fdn_A	279	Structure-Based Drug Design Of Novel Aurora Kinase		8e-05
4f63_A	309	Crystal Structure Of Human Fibroblast Growth Factor		8e-05
1f3m_C	297	Crystal Structure Of Human SerineTHREONINE KINASE P		9e-05
3v5q_A	297	Discovery Of A Selective Trk Inhibitor With Efficac		9e-05
2j0l_A	276	Crystal Structure Of A The Active Conformation Of T		9e-05
2ozo_A	613	Autoinhibited Intact Human Zap-70 Length = 613		1e-04
3tt0_A	382	Co-Structure Of Fibroblast Growth Factor Receptor 1		1e-04
3bz3_A	276	Crystal Structure Analysis Of Focal Adhesion Kinase		1e-04
4g31_A	299	Crystal Structure Of Gsk6414 Bound To Perk (R587-R1		1e-04
2jkm_A	276	Focal Adhesion Kinase Catalytic Domain In Complex W		1e-04
2r4b_A	321	Erbb4 Kinase Domain Complexed With A Thienopyrimidi		1e-04
2etm_A	281	Crystal Structure Of Focal Adhesion Kinase Domain C		1e-04
2j0m_B	276	Crystal Structure A Two-Chain Complex Between The F		1e-04
2rei_A	318	Kinase Domain Of Human Ephrin Type-a Receptor 7 (ep		1e-04
2wtw_A	285	Aurora-A Inhibitor Structure (2nd Crystal Form) Len		1e-04
3pxk_A	282	Focal Adhesion Kinase Catalytic Domain In Complex W		1e-04
2xng_A	283	Structure Of Aurora-A Bound To A Selective Imidazop		1e-04
2j50_A	280	Structure Of Aurora-2 In Complex With Pha-739358 Le		1e-04
2x6d_A	285	Aurora-A Bound To An Inhibitor Length = 285		1e-04
4ebw_A	304	Structure Of Focal Adhesion Kinase Catalytic Domain		1e-04
1mp8_A	281	Crystal Structure Of Focal Adhesion Kinase (Fak) Le		1e-04
1mq4_A	272	Crystal Structure Of Aurora-A Protein Kinase Length		1e-04
2xru_A	280	Aurora-A T288e Complexed With Pha-828300 Length = 2		1e-04
1muo_A	297	Crystal Structure Of Aurora-2, An Oncogenic Serine-		1e-04
2j4z_A	306	Structure Of Aurora-2 In Complex With Pha-680626 Le		1e-04
3o50_A	267	Crystal Structure Of Benzamide 9 Bound To Auroraa L		1e-04
3qd2_B	332	Crsytal Structure Of Mouse Perk Kinase Domain Lengt		1e-04
3kul_B	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		1e-04
4asz_A	299	Crystal Structure Of Apo Trkb Kinase Domain Length		1e-04
2h6d_A	276	Protein Kinase Domain Of The Human 5'-Amp-Activated		1e-04
2w1d_A	275	Structure Determination Of Aurora Kinase In Complex		1e-04
2wqe_A	262	Structure Of S155r Aurora-A Somatic Mutant Length =		1e-04
3cjf_A	309	Crystal Structure Of Vegfr2 In Complex With A 3,4,5		1e-04
2z8c_A	303	Phosphorylated Insulin Receptor Tyrosine Kinase In		1e-04
3gqi_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		1e-04
2ivs_A	314	Crystal Structure Of Non-Phosphorylated Ret Tyrosin		1e-04
3coh_A	268	Crystal Structure Of Aurora-A In Complex With A Pen		1e-04
2wtv_A	285	Aurora-A Inhibitor Structure Length = 285		1e-04
2z7q_A	321	Crystal Structure Of The N-Terminal Kinase Domain O		1e-04
1ir3_A	306	Phosphorylated Insulin Receptor Tyrosine Kinase In		1e-04
1rqq_A	306	Crystal Structure Of The Insulin Receptor Kinase In		1e-04
1ol5_A	282	Structure Of Aurora-A 122-403, Phosphorylated On Th		2e-04
2xir_A	316	Crystal Structure Of The Vegfr2 Kinase Domain In Co		2e-04
3vnt_A	318	Crystal Structure Of The Kinase Domain Of Human Veg		2e-04
3nrm_A	283	Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibito		2e-04
2w1c_A	275	Structure Determination Of Aurora Kinase In Complex		2e-04
3ha6_A	268	Crystal Structure Of Aurora A In Complex With Tpx2		2e-04
3eta_A	317	Kinase Domain Of Insulin Receptor Complexed With A		2e-04
1y6a_A	366	Crystal Structure Of Vegfr2 In Complex With A 2-Ani		2e-04
1irk_A	306	Crystal Structure Of The Tyrosine Kinase Domain Of		2e-04
2i0v_A	335	C-Fms Tyrosine Kinase In Complex With A Quinolone I		2e-04
3u6j_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		2e-04
3e5a_A	268	Crystal Structure Of Aurora A In Complex With Vx-68		2e-04
3aln_A	327	Crystal Structure Of Human Non-Phosphorylated Mkk4		2e-04
3ewh_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		2e-04
3cjg_A	309	Crystal Structure Of Vegfr2 In Complex With A 3,4,5		2e-04
1ywn_A	316	Vegfr2 In Complex With A Novel 4-amino-furo[2,3-d]p		2e-04
3vhk_A	368	Crystal Structure Of The Vegfr2 Kinase Domain In Co		2e-04
3hng_A	360	Crystal Structure Of Vegfr1 In Complex With N-(4-ch		2e-04
3lco_A	324	Inhibitor Bound To A Dfg-Out Structure Of The Kinas		2e-04
3h0y_A	268	Aurora A In Complex With A Bisanilinopyrimidine Len		2e-04
2dwb_A	285	Aurora-A Kinase Complexed With Amppnp Length = 285		2e-04
3vid_A	356	Crystal Structure Of Human Vegfr2 Kinase Domain Wit		2e-04
2oh4_A	316	Crystal Structure Of Vegfr2 With A Benzimidazole-Ur		2e-04
4agc_A	353	Crystal Structure Of Vegfr2 (Juxtamembrane And Kina		2e-04
3d14_A	272	Crystal Structure Of Mouse Aurora A (Asn186->gly, L		2e-04
3vhe_A	359	Crystal Structure Of Human Vegfr2 Kinase Domain Wit		2e-04
2wqm_A	310	Structure Of Apo Human Nek7 Length = 310		2e-04
1zy4_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		2e-04
3c7q_A	316	Structure Of Vegfr2 Kinase Domain In Complex With B		2e-04
1u59_A	287	Crystal Structure Of The Zap-70 Kinase Domain In Co		2e-04
2p2i_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		2e-04
2p2h_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		2e-04
3omv_A	307	Crystal Structure Of C-Raf (Raf-1) Length = 307		2e-04
1ad5_A	438	Src Family Kinase Hck-Amp-Pnp Complex Length = 438		2e-04
3kl8_A	269	Camkiintide Inhibitor Complex Length = 269		2e-04
3kk9_A	282	Camkii Substrate Complex B Length = 282		2e-04
3kk8_A	284	Camkii Substrate Complex A Length = 284		2e-04
4hzr_A	277	Crystal Structure Of Ack1 Kinase Domain Length = 27		3e-04
4id7_A	273	Ack1 Kinase In Complex With The Inhibitor Cis-3-[8-		3e-04
3eqc_A	360	X-Ray Structure Of The Human Mitogen-Activated Prot		3e-04
1s9j_A	341	X-Ray Structure Of The Human Mitogen-Activated Prot		3e-04
2y4i_C	395	Ksr2-Mek1 Heterodimer Length = 395		3e-04
2p55_A	333	X-Ray Structure Of The Human Mitogen-Activated Prot		3e-04
3orn_A	307	Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In		3e-04
3sls_A	304	Crystal Structure Of Human Mek-1 Kinase In Complex		3e-04
3i5n_A	309	Crystal Structure Of C-Met With Triazolopyridazine		3e-04
2ivt_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		3e-04
1yhv_A	297	Crystal Structure Of Pak1 Kinase Domain With Two Po		3e-04
3mbl_A	328	Crystal Structure Of The Human Mitogen-Activated Pr		3e-04
3dv3_A	322	Mek1 With Pf-04622664 Bound Length = 322		3e-04
3eqp_B	276	Crystal Structure Of Ack1 With Compound T95 Length		3e-04
2ivv_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		3e-04
1u46_A	291	Crystal Structure Of The Unphosphorylated Kinase Do		3e-04
2rfn_A	310	X-ray Structure Of C-met With Inhibitor. Length = 3		3e-04
1vr2_A	316	Human Vascular Endothelial Growth Factor Receptor 2		3e-04
1gjo_A	316	The Fgfr2 Tyrosine Kinase Domain Length = 316		3e-04
4ewh_B	275	Co-Crystal Structure Of Ack1 With Inhibitor Length		3e-04
2pvy_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		3e-04
2pzp_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		3e-04
3f66_A	298	Human C-Met Kinase In Complex With Quinoxaline Inhi		3e-04
3ri1_A	313	Crystal Structure Of The Catalytic Domain Of Fgfr2		3e-04
3lq8_A	302	Structure Of The Kinase Domain Of C-Met Bound To Xl		3e-04
3b2t_A	311	Structure Of Phosphotransferase Length = 311		3e-04
2wgj_A	306	X-Ray Structure Of Pf-02341066 Bound To The Kinase		3e-04
1u54_A	291	Crystal Structures Of The Phosphorylated And Unphos		3e-04
3oct_A	265	Crystal Structure Of Bruton's Tyrosine Kinase Mutan		4e-04
3q6u_A	308	Structure Of The Apo Met Receptor Kinase In The Dua		4e-04
2pz5_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		4e-04
3fxz_A	297	Crystal Structure Of Pak1 Kinase Domain With Ruthen		4e-04
1ove_A	366	The Structure Of P38 Alpha In Complex With A Dihydr		4e-04
3k54_A	283	Structures Of Human Bruton's Tyrosine Kinase In Act		4e-04
2wd1_A	292	Human C-Met Kinase In Complex With Azaindole Inhibi		4e-04
3q52_A	306	Structure Of Phosphorylated Pak1 Kinase Domain Leng		4e-04
2g15_A	318	Structural Characterization Of Autoinhibited C-Met		4e-04
4hzs_A	341	Crystal Structure Of Ack1 Kinase Domain With C-term		4e-04
2y8o_A	362	Crystal Structure Of Human P38alpha Complexed With		4e-04
4an2_A	301	Crystal Structures Of Human Mek1 With Carboxamide-B		4e-04
2bdw_A	362	Crystal Structure Of The Auto-Inhibited Kinase Doma		4e-04
1i44_A	306	Crystallographic Studies Of An Activation Loop Muta		4e-04
2pvf_A	334	Crystal Structure Of Tyrosine Phosphorylated Activa		4e-04
3q6w_A	307	Structure Of Dually-phosphorylated Met Receptor Kin		4e-04
4gg5_A	319	Crystal Structure Of Cmet In Complex With Novel Inh		4e-04
2pwl_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		4e-04
3cly_A	334	Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase		4e-04
3oht_A	389	Crystal Structure Of Salmo Salar P38alpha Length =		4e-04
2zv7_A	279	Lyn Tyrosine Kinase Domain, Apo Form Length = 279		4e-04
2psq_A	370	Crystal Structure Of Unphosphorylated Unactivated W		4e-04
2c30_A	321	Crystal Structure Of The Human P21-Activated Kinase		5e-04
3pix_A	274	Crystal Structure Of Btk Kinase Domain Complexed Wi		5e-04
3gen_A	283	The 1.6 A Crystal Structure Of Human Bruton's Tyros		5e-04
3zh8_A	349	A Novel Small Molecule Apkc Inhibitor Length = 349		5e-04
1ol6_A	282	Structure Of Unphosphorylated D274n Mutant Of Auror		5e-04
3a8w_A	345	Crystal Structure Of Pkciota Kinase Domain Length =		5e-04
3qbn_A	281	Structure Of Human Aurora A In Complex With A Diami		5e-04
3g0e_A	336	Kit Kinase Domain In Complex With Sunitinib Length		5e-04
1k2p_A	263	Crystal Structure Of Bruton's Tyrosine Kinase Domai		5e-04
3rzf_A	677	Crystal Structure Of Inhibitor Of Kappab Kinase Bet		5e-04
3p08_A	267	Crystal Structure Of The Human Btk Kinase Domain Le		5e-04
3qa8_A	676	Crystal Structure Of Inhibitor Of Kappa B Kinase Be		5e-04
3ocs_A	271	Crystal Structure Of Bruton's Tyrosine Kinase In Co		5e-04
1t45_A	331	Structural Basis For The Autoinhibition And Sti-571		5e-04
1t46_A	313	Structural Basis For The Autoinhibition And Sti-571		5e-04
2xne_A	272	Structure Of Aurora-A Bound To An Imidazopyrazine I		5e-04
2yza_A	276	Crystal Structure Of Kinase Domain Of Human 5'-Amp-		5e-04
1pkg_A	329	Structure Of A C-kit Kinase Product Complex Length		5e-04
4dc2_A	396	Structure Of Pkc In Complex With A Substrate Peptid		6e-04
1zrz_A	364	Crystal Structure Of The Catalytic Domain Of Atypic		6e-04
3e92_A	371	Crystal Structure Of P38 Kinase In Complex With A B		6e-04
2baq_A	365	P38alpha Bound To Ro3201195 Length = 365		6e-04
3d83_A	360	Crystal Structure Of P38 Kinase In Complex With A B		6e-04
2bal_A	365	P38alpha Map Kinase Bound To Pyrazoloamine Length =		6e-04
2f57_A	317	Crystal Structure Of The Human P21-activated Kinase		6e-04
2pzr_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		7e-04
2qoo_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		7e-04
3gcp_A	360	Human P38 Map Kinase In Complex With Sb203580 Lengt		7e-04
2vwu_A	302	Ephb4 Kinase Domain Inhibitor Complex Length = 302		7e-04
2q0b_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		7e-04
3g0f_A	336	Kit Kinase Domain Mutant D816h In Complex With Suni		7e-04
2qo7_A	373	Human Epha3 Kinase And Juxtamembrane Region, Dephos		8e-04
3gi3_A	360	Crystal Structure Of A N-Phenyl-N'-Naphthylurea Ana		8e-04
2py3_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		8e-04
3dkg_A	317	Sgx Clone 5698a109kfg1h1 Length = 317		9e-04
2fsl_X	367	Mitogen Activated Protein Kinase P38alpha (D176a+f3		9e-04
2fst_X	367	Mitogen Activated Protein Kinase P38alpha (d176a+f3		9e-04
4e5a_X	360	The W197a Mutant Of P38a Map Kinase Length = 360		9e-04

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 109/220 (49%), Gaps = 14/220 (6%)
Query: 28  HNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL--------PRLKIASDIVNSLA 79
           H ++L+  G C+     +LV+  +  G++  C+   P          R +IA      LA
Sbjct: 94  HRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLA 153
Query: 80  YLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAP 139
           YLH      I+ R+ K  NIL +EE  A   DF L+  +   + H+    V GT G+ AP
Sbjct: 154 YLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDXHVXX-AVRGTIGHIAP 212
Query: 140 EYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTG 199
           EY+S    +EK++VF +G  L EL+ G+   +DL +  +D      +++K  L++K+   
Sbjct: 213 EYLSTGKSSEKTDVFGYGVMLLELITGQ-RAFDLARLANDDDVMLLDWVKGLLKEKKLEA 271
Query: 200 IPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM 239
               ++  D+    K++++    Q+ L C  +SP +RP M
Sbjct: 272 ----LVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKM 307

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score = 90.5 bits (223), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 108/220 (49%), Gaps = 14/220 (6%)
Query: 28  HNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL--------PRLKIASDIVNSLA 79
           H ++L+  G C+     +LV+  +  G++  C+   P          R +IA      LA
Sbjct: 86  HRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLA 145
Query: 80  YLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAP 139
           YLH      I+ R+ K  NIL +EE  A   DF L+  +   + H+    V G  G+ AP
Sbjct: 146 YLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDXHVXX-AVRGXIGHIAP 204
Query: 140 EYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTG 199
           EY+S    +EK++VF +G  L EL+ G+   +DL +  +D      +++K  L++K+   
Sbjct: 205 EYLSTGKSSEKTDVFGYGVMLLELITGQ-RAFDLARLANDDDVMLLDWVKGLLKEKKLEA 263
Query: 200 IPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM 239
               ++  D+    K++++    Q+ L C  +SP +RP M
Sbjct: 264 ----LVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKM 299

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 106/223 (47%), Gaps = 20/223 (8%)
Query: 28  HNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLP--------RLKIASDIVNSLA 79
           H H++  IG C +    IL+++ +E G L+  ++G+ LP        RL+I       L 
Sbjct: 94  HPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLH 153
Query: 80  YLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPE-GETHITTDRVIGTRGYSA 138
           YLH    R I+ R+ K+ NIL +E  V K  DF +S    E G+TH+    V GT GY  
Sbjct: 154 YLH---TRAIIHRDVKSINILLDENFVPKITDFGISKKGTELGQTHLXX-VVKGTLGYID 209
Query: 139 PEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFT 198
           PEY     L EKS+V+SFG  LFE+L  R  I   ++          E+      + +  
Sbjct: 210 PEYFIKGRLTEKSDVYSFGVVLFEVLCARSAI---VQSLPREMVNLAEWAVESHNNGQLE 266
Query: 199 GIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD 241
            I  P +   I    + + L       ++C+  S EDRP+M D
Sbjct: 267 QIVDPNLADKI----RPESLRKFGDTAVKCLALSSEDRPSMGD 305

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 87.0 bits (214), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 105/223 (47%), Gaps = 20/223 (8%)
Query: 28  HNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLP--------RLKIASDIVNSLA 79
           H H++  IG C +    IL+++ +E G L+  ++G+ LP        RL+I       L 
Sbjct: 94  HPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLH 153
Query: 80  YLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPE-GETHITTDRVIGTRGYSA 138
           YLH    R I+ R+ K+ NIL +E  V K  DF +S    E  +TH+    V GT GY  
Sbjct: 154 YLH---TRAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLXX-VVKGTLGYID 209
Query: 139 PEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFT 198
           PEY     L EKS+V+SFG  LFE+L  R  I   ++          E+      + +  
Sbjct: 210 PEYFIKGRLTEKSDVYSFGVVLFEVLCARSAI---VQSLPREMVNLAEWAVESHNNGQLE 266
Query: 199 GIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD 241
            I  P +   I    + + L       ++C+  S EDRP+M D
Sbjct: 267 QIVDPNLADKI----RPESLRKFGDTAVKCLALSSEDRPSMGD 305

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 10/165 (6%)
Query: 6   HEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA-- 63
            ++H       +  +    ++ H +I+  +G   Q P   +V + +  G+L   +  +  
Sbjct: 71  QDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGA 130
Query: 64  -----PLPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISI 118
                   RL +A D+   + YLH   P PIV RN K+ N+L +++   K  DF LS   
Sbjct: 131 REQLDERRRLSMAYDVAKGMNYLHNRNP-PIVHRNLKSPNLLVDKKYTVKVCDFGLSRL- 188
Query: 119 PEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL 163
            +  T +++    GT  + APE +     NEKS+V+SFG  L+EL
Sbjct: 189 -KASTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWEL 232

>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium Tuberculosis Length = 299

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 66/127 (51%), Gaps = 2/127 (1%)
Query: 42  PIPILVFQSVEYGTLRDCIFG-APLPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNIL 100
           P+P +V + V+  TLRD +    P+   +    I ++   L+F     I+ R+ K  NI+
Sbjct: 106 PLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIM 165
Query: 101 FNEENVAKWFDFLLSISIPEGETHIT-TDRVIGTRGYSAPEYISICVLNEKSNVFSFGAF 159
            +  N  K  DF ++ +I +    +T T  VIGT  Y +PE      ++ +S+V+S G  
Sbjct: 166 ISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCV 225
Query: 160 LFELLAG 166
           L+E+L G
Sbjct: 226 LYEVLTG 232

>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP Length = 311

Iteration: 1
 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 66/127 (51%), Gaps = 2/127 (1%)
Query: 42  PIPILVFQSVEYGTLRDCIFG-APLPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNIL 100
           P+P +V + V+  TLRD +    P+   +    I ++   L+F     I+ R+ K  NI+
Sbjct: 89  PLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIM 148
Query: 101 FNEENVAKWFDFLLSISIPEGETHIT-TDRVIGTRGYSAPEYISICVLNEKSNVFSFGAF 159
            +  N  K  DF ++ +I +    +T T  VIGT  Y +PE      ++ +S+V+S G  
Sbjct: 149 ISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCV 208
Query: 160 LFELLAG 166
           L+E+L G
Sbjct: 209 LYEVLTG 215

>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant (Crystal Form 1) Length = 311

Iteration: 1
 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 66/127 (51%), Gaps = 2/127 (1%)
Query: 42  PIPILVFQSVEYGTLRDCIFG-APLPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNIL 100
           P+P +V + V+  TLRD +    P+   +    I ++   L+F     I+ R+ K  NI+
Sbjct: 89  PLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIM 148
Query: 101 FNEENVAKWFDFLLSISIPEGETHIT-TDRVIGTRGYSAPEYISICVLNEKSNVFSFGAF 159
            +  N  K  DF ++ +I +    +T T  VIGT  Y +PE      ++ +S+V+S G  
Sbjct: 149 ISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCV 208
Query: 160 LFELLAG 166
           L+E+L G
Sbjct: 209 LYEVLTG 215

>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycobacterium Tuberculosis Pknb. Length = 311

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 66/127 (51%), Gaps = 2/127 (1%)
Query: 42  PIPILVFQSVEYGTLRDCIFG-APLPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNIL 100
           P+P +V + V+  TLRD +    P+   +    I ++   L+F     I+ R+ K  NI+
Sbjct: 89  PLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIM 148
Query: 101 FNEENVAKWFDFLLSISIPEGETHIT-TDRVIGTRGYSAPEYISICVLNEKSNVFSFGAF 159
            +  N  K  DF ++ +I +    +T T  VIGT  Y +PE      ++ +S+V+S G  
Sbjct: 149 ISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCV 208
Query: 160 LFELLAG 166
           L+E+L G
Sbjct: 209 LYEVLTG 215

>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant Length = 311

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 66/127 (51%), Gaps = 2/127 (1%)
Query: 42  PIPILVFQSVEYGTLRDCIFG-APLPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNIL 100
           P+P +V + V+  TLRD +    P+   +    I ++   L+F     I+ R+ K  NI+
Sbjct: 89  PLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIM 148
Query: 101 FNEENVAKWFDFLLSISIPEGETHIT-TDRVIGTRGYSAPEYISICVLNEKSNVFSFGAF 159
            +  N  K  DF ++ +I +    +T T  VIGT  Y +PE      ++ +S+V+S G  
Sbjct: 149 ISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCV 208
Query: 160 LFELLAG 166
           L+E+L G
Sbjct: 209 LYEVLTG 215

>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb Mutant Kinase Domain In Complex With Kt5720 Length = 311

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 2/127 (1%)
Query: 42  PIPILVFQSVEYGTLRDCIFG-APLPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNIL 100
           P+P +V + V+  TLRD +    P+   +    I ++   L+F     I+ R+ K  NIL
Sbjct: 89  PLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIL 148
Query: 101 FNEENVAKWFDFLLSISIPE-GETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAF 159
            +  N  K  DF ++ +I + G +   T  VIGT  Y +PE      ++ +S+V+S G  
Sbjct: 149 ISATNAVKVVDFGIARAIADSGNSVXQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCV 208
Query: 160 LFELLAG 166
           L+E+L G
Sbjct: 209 LYEVLTG 215

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 10/165 (6%)
Query: 6   HEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA-- 63
            ++H       +  +    ++ H +I+  +G   Q P   +V + +  G+L   +  +  
Sbjct: 71  QDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGA 130
Query: 64  -----PLPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISI 118
                   RL +A D+   + YLH   P PIV R+ K+ N+L +++   K  DF LS   
Sbjct: 131 REQLDERRRLSMAYDVAKGMNYLHNRNP-PIVHRDLKSPNLLVDKKYTVKVCDFGLSRL- 188
Query: 119 PEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL 163
            +    + +    GT  + APE +     NEKS+V+SFG  L+EL
Sbjct: 189 -KASXFLXSKXAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWEL 232

>pdb|4E1Z|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 291

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 73/148 (49%), Gaps = 13/148 (8%)
Query: 26  MSHNHILKRIGCCL-QTPIPI-LVFQSVEYGTLRD-----CIFGAPLPRLKIASDIVNSL 78
           + H HI+K  GCC  Q    + LV + V  G+LRD     C+  A L  L  A  I   +
Sbjct: 68  LYHEHIVKYKGCCEDQGEKSVQLVMEYVPLGSLRDYLPRHCVGLAQL--LLFAQQICEGM 125
Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEG-ETHITTDRVIGTRGYS 137
           AYLH    +  + R    +N+L + + + K  DF L+ ++PEG E +   +       + 
Sbjct: 126 AYLH---AQHYIHRALAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWY 182
Query: 138 APEYISICVLNEKSNVFSFGAFLFELLA 165
           APE +  C     S+V+SFG  L+ELL 
Sbjct: 183 APECLKECKFYYASDVWSFGVTLYELLT 210

>pdb|4E20|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 290

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 73/148 (49%), Gaps = 13/148 (8%)
Query: 26  MSHNHILKRIGCCL-QTPIPI-LVFQSVEYGTLRD-----CIFGAPLPRLKIASDIVNSL 78
           + H HI+K  GCC  Q    + LV + V  G+LRD     C+  A L  L  A  I   +
Sbjct: 67  LYHEHIVKYKGCCEDQGEKSVQLVMEYVPLGSLRDYLPRHCVGLAQL--LLFAQQICEGM 124
Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEG-ETHITTDRVIGTRGYS 137
           AYLH    +  + R    +N+L + + + K  DF L+ ++PEG E +   +       + 
Sbjct: 125 AYLH---AQHYIHRALAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWY 181
Query: 138 APEYISICVLNEKSNVFSFGAFLFELLA 165
           APE +  C     S+V+SFG  L+ELL 
Sbjct: 182 APECLKECKFYYASDVWSFGVTLYELLT 209

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 72/157 (45%), Gaps = 17/157 (10%)
Query: 24  AQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLP---RLKIASDIVNSLAY 80
           A + H +I+   G CL+ P   LV +    G L   + G  +P    +  A  I   + Y
Sbjct: 61  AMLKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRVLSGKRIPPDILVNWAVQIARGMNY 120
Query: 81  LHFGFPRPIVLRNFKTQNILFNEE--------NVAKWFDFLLSISIPEGETHITTD-RVI 131
           LH     PI+ R+ K+ NIL  ++         + K  DF L+      E H TT     
Sbjct: 121 LHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLA-----REWHRTTKMSAA 175
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRI 168
           G   + APE I   + ++ S+V+S+G  L+ELL G +
Sbjct: 176 GAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEV 212

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 73/154 (47%), Gaps = 11/154 (7%)
Query: 20  ITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRD---CIFGAP----LPRLKIAS 72
           I   A+  H ++++ +G         LV+     G+L D   C+ G P      R KIA 
Sbjct: 72  IKVXAKCQHENLVELLGFSSDGDDLCLVYVYXPNGSLLDRLSCLDGTPPLSWHXRCKIAQ 131
Query: 73  DIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIG 132
              N + +LH       + R+ K+ NIL +E   AK  DF L+ +  +    +   R++G
Sbjct: 132 GAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDFGLARASEKFAQXVXXSRIVG 188
Query: 133 TRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
           T  Y APE +    +  KS+++SFG  L E++ G
Sbjct: 189 TTAYXAPEALR-GEITPKSDIYSFGVVLLEIITG 221

>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With Its Activating Protein Tab1 Length = 307

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 79/152 (51%), Gaps = 15/152 (9%)
Query: 24  AQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA-PLPRLKIASDIV------N 76
           ++++H +I+K  G CL  P+  LV +  E G+L + + GA PLP    A  +        
Sbjct: 56  SRVNHPNIVKLYGACL-NPV-CLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQ 113
Query: 77  SLAYLHFGFPRPIVLRNFKTQNILF-NEENVAKWFDFLLSISIPEGETHITTDRVIGTRG 135
            +AYLH   P+ ++ R+ K  N+L      V K  DF  +  I   +TH+T ++  G+  
Sbjct: 114 GVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDI---QTHMTNNK--GSAA 168
Query: 136 YSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           + APE       +EK +VFS+G  L+E++  R
Sbjct: 169 WMAPEVFEGSNYSEKCDVFSWGIILWEVITRR 200

>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol Length = 315

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 79/152 (51%), Gaps = 15/152 (9%)
Query: 24  AQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA-PLPRLKIASDIV------N 76
           ++++H +I+K  G CL  P+  LV +  E G+L + + GA PLP    A  +        
Sbjct: 57  SRVNHPNIVKLYGACL-NPV-CLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQ 114
Query: 77  SLAYLHFGFPRPIVLRNFKTQNILF-NEENVAKWFDFLLSISIPEGETHITTDRVIGTRG 135
            +AYLH   P+ ++ R+ K  N+L      V K  DF  +  I   +TH+T ++  G+  
Sbjct: 115 GVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDI---QTHMTNNK--GSAA 169
Query: 136 YSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           + APE       +EK +VFS+G  L+E++  R
Sbjct: 170 WMAPEVFEGSNYSEKCDVFSWGIILWEVITRR 201

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 13/155 (8%)
Query: 20  ITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRD---CIFGAPLP-----RLKIA 71
           I   A+  H ++++ +G         LV+  +  G+L D   C+ G P P     R KIA
Sbjct: 81  IKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTP-PLSWHMRCKIA 139
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
               N + +LH       + R+ K+ NIL +E   AK  DF L+ +  +    +   R++
Sbjct: 140 QGAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMXSRIV 196
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
           GT  Y APE +    +  KS+++SFG  L E++ G
Sbjct: 197 GTTAYMAPEALR-GEITPKSDIYSFGVVLLEIITG 230

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 13/155 (8%)
Query: 20  ITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRD---CIFGAPLP-----RLKIA 71
           I   A+  H ++++ +G         LV+  +  G+L D   C+ G P P     R KIA
Sbjct: 75  IKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTP-PLSWHMRCKIA 133
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
               N + +LH       + R+ K+ NIL +E   AK  DF L+ +  +    +   R++
Sbjct: 134 QGAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDFGLARASEKFAQXVMXXRIV 190
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
           GT  Y APE +    +  KS+++SFG  L E++ G
Sbjct: 191 GTTAYMAPEALR-GEITPKSDIYSFGVVLLEIITG 224

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 13/155 (8%)
Query: 20  ITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRD---CIFGAPLP-----RLKIA 71
           I   A+  H ++++ +G         LV+  +  G+L D   C+ G P P     R KIA
Sbjct: 81  IKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTP-PLSWHMRCKIA 139
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
               N + +LH       + R+ K+ NIL +E   AK  DF L+ +  +    +   R++
Sbjct: 140 QGAANGINFLHENHH---IHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMXXRIV 196
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
           GT  Y APE +    +  KS+++SFG  L E++ G
Sbjct: 197 GTTAYMAPEALR-GEITPKSDIYSFGVVLLEIITG 230

>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 318

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 70/150 (46%), Gaps = 19/150 (12%)
Query: 26  MSHNHILKRIGCCLQTPIPIL--VFQSVEYGTLRDCIFGAPLPR--------LKIASDIV 75
           + H HI+K  GCC       L  V + V  G+LRD      LPR        L  A  I 
Sbjct: 90  LYHEHIIKYKGCCEDAGAASLQLVMEYVPLGSLRDY-----LPRHSIGLAQLLLFAQQIC 144
Query: 76  NSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEG-ETHITTDRVIGTR 134
             +AYLH    +  + R+   +N+L + + + K  DF L+ ++PEG E +   +      
Sbjct: 145 EGMAYLH---AQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEXYRVREDGDSPV 201
Query: 135 GYSAPEYISICVLNEKSNVFSFGAFLFELL 164
            + APE +        S+V+SFG  L+ELL
Sbjct: 202 FWYAPECLKEYKFYYASDVWSFGVTLYELL 231

>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 302

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 70/151 (46%), Gaps = 19/151 (12%)
Query: 26  MSHNHILKRIGCCLQTPIPIL--VFQSVEYGTLRDCIFGAPLPR--------LKIASDIV 75
           + H HI+K  GCC       L  V + V  G+LRD      LPR        L  A  I 
Sbjct: 73  LYHEHIIKYKGCCEDQGEKSLQLVMEYVPLGSLRDY-----LPRHSIGLAQLLLFAQQIC 127
Query: 76  NSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEG-ETHITTDRVIGTR 134
             +AYLH    +  + RN   +N+L + + + K  DF L+ ++PEG E +   +      
Sbjct: 128 EGMAYLH---AQHYIHRNLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPV 184
Query: 135 GYSAPEYISICVLNEKSNVFSFGAFLFELLA 165
            + APE +        S+V+SFG  L+ELL 
Sbjct: 185 FWYAPECLKEYKFYYASDVWSFGVTLYELLT 215

>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-Thiadiazole- Thiophene Inhibitor Length = 302

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 70/151 (46%), Gaps = 19/151 (12%)
Query: 26  MSHNHILKRIGCCLQTPIPIL--VFQSVEYGTLRDCIFGAPLPR--------LKIASDIV 75
           + H HI+K  GCC       L  V + V  G+LRD      LPR        L  A  I 
Sbjct: 73  LYHEHIIKYKGCCEDQGEKSLQLVMEYVPLGSLRDY-----LPRHSIGLAQLLLFAQQIC 127
Query: 76  NSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEG-ETHITTDRVIGTR 134
             +AYLH    +  + RN   +N+L + + + K  DF L+ ++PEG E +   +      
Sbjct: 128 EGMAYLH---SQHYIHRNLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPV 184
Query: 135 GYSAPEYISICVLNEKSNVFSFGAFLFELLA 165
            + APE +        S+V+SFG  L+ELL 
Sbjct: 185 FWYAPECLKEYKFYYASDVWSFGVTLYELLT 215

>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus SerineTHREONINE KINASE Pknb Length = 294

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 76/150 (50%), Gaps = 10/150 (6%)
Query: 23  AAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFG-APLP---RLKIASDIVNSL 78
           ++Q+SH +I+  I    +     LV + +E  TL + I    PL     +   + I++ +
Sbjct: 65  SSQLSHQNIVSMIDVDEEDDCYYLVMEYIEGPTLSEYIESHGPLSVDTAINFTNQILDGI 124
Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHIT-TDRVIGTRGYS 137
            + H      IV R+ K QNIL +     K FDF ++ ++   ET +T T+ V+GT  Y 
Sbjct: 125 KHAH---DMRIVHRDIKPQNILIDSNKTLKIFDFGIAKAL--SETSLTQTNHVLGTVQYF 179
Query: 138 APEYISICVLNEKSNVFSFGAFLFELLAGR 167
           +PE       +E ++++S G  L+E+L G 
Sbjct: 180 SPEQAKGEATDECTDIYSIGIVLYEMLVGE 209

>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase Mst4 In Complex With An Quinazolin Length = 301

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 8/153 (5%)
Query: 18  NNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIAS---DI 74
             IT  +Q   +++ K  G  L+     ++ + +  G+  D +   P    +IA+   +I
Sbjct: 70  QEITVLSQCDSSYVTKYYGSYLKGSKLWIIMEYLGGGSALDLLRAGPFDEFQIATMLKEI 129
Query: 75  VNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTR 134
           +  L YLH       + R+ K  N+L +E+   K  DF ++  + +  T I  +  +GT 
Sbjct: 130 LKGLDYLH---SEKKIHRDIKAANVLLSEQGDVKLADFGVAGQLTD--TQIKRNTFVGTP 184
Query: 135 GYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
            + APE I     + K++++S G    EL  G 
Sbjct: 185 FWMAPEVIQQSAYDSKADIWSLGITAIELAKGE 217

>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In Complex With Staurosporine Length = 310

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 89/203 (43%), Gaps = 22/203 (10%)
Query: 7   EYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI--FGAP 64
            +   T  + +  +     + H ++LK IG   +      + + ++ GTLR  I    + 
Sbjct: 45  RFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYIKGGTLRGIIKSMDSQ 104
Query: 65  LP---RLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLS------ 115
            P   R+  A DI + +AYLH      I+ R+  + N L  E       DF L+      
Sbjct: 105 YPWSQRVSFAKDIASGMAYLH---SMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDE 161
Query: 116 ISIPEGETHITT-DR-----VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIH 169
            + PEG   +   DR     V+G   + APE I+    +EK +VFSFG  L E++ GR++
Sbjct: 162 KTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEII-GRVN 220
Query: 170 I-WDLLKDTHDHGCFFNEYLKNY 191
              D L  T D G     +L  Y
Sbjct: 221 ADPDYLPRTMDFGLNVRGFLDRY 243

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 16/161 (9%)
Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI-----FGAPLPRLKIA 71
           I       ++SH  +++  G CL+     LVF+ +E+G L D +       A    L + 
Sbjct: 50  IEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMC 109
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
            D+   +AYL       ++ R+   +N L  E  V K  DF ++  + + +   +T    
Sbjct: 110 LDVCEGMAYLE---EASVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSST---- 162
Query: 132 GTR---GYSAPEYISICVLNEKSNVFSFGAFLFELLA-GRI 168
           GT+    +++PE  S    + KS+V+SFG  ++E+ + G+I
Sbjct: 163 GTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKI 203

>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase Catalytic Subunit From Saccharomyces Cerevisiae Length = 318

Iteration: 1
 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 82/180 (45%), Gaps = 21/180 (11%)
Query: 26  MSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA---PLPRLKI-ASDIVNSLAYL 81
           ++H  I++  G         ++   +E G L   +  +   P P  K  A+++  +L YL
Sbjct: 63  VTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYL 122
Query: 82  HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEY 141
           H    + I+ R+ K +NIL ++    K  DF  +  +P+      T  + GT  Y APE 
Sbjct: 123 H---SKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPD-----VTYXLCGTPDYIAPEV 174
Query: 142 ISICVLNEKSNVFSFGAFLFELLAGRIHIWD---------LLKDTHDHGCFFNEYLKNYL 192
           +S    N+  + +SFG  ++E+LAG    +D         +L        FFNE +K+ L
Sbjct: 175 VSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNAELRFPPFFNEDVKDLL 234

>pdb|3A7F|A Chain A, Human Mst3 Kinase Length = 303

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 8/153 (5%)
Query: 18  NNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIAS---DI 74
             IT  +Q    ++ K  G  L+     ++ + +  G+  D +   PL   +IA+   +I
Sbjct: 69  QEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGPLDETQIATILREI 128
Query: 75  VNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTR 134
           +  L YLH       + R+ K  N+L +E    K  DF ++  +   +T I  +  +GT 
Sbjct: 129 LKGLDYLH---SEKKIHRDIKAANVLLSEHGEVKLADFGVAGQL--TDTQIKRNXFVGTP 183
Query: 135 GYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
            + APE I     + K++++S G    EL  G 
Sbjct: 184 FWMAPEVIKQSAYDSKADIWSLGITAIELARGE 216

>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 16/161 (9%)
Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI-----FGAPLPRLKIA 71
           I       ++SH  +++  G CL+     LVF+ +E+G L D +       A    L + 
Sbjct: 48  IEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMC 107
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
            D+   +AYL       ++ R+   +N L  E  V K  DF ++  + + +   +T    
Sbjct: 108 LDVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSST---- 160
Query: 132 GTR---GYSAPEYISICVLNEKSNVFSFGAFLFELLA-GRI 168
           GT+    +++PE  S    + KS+V+SFG  ++E+ + G+I
Sbjct: 161 GTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKI 201

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 75/158 (47%), Gaps = 10/158 (6%)
Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI-----FGAPLPRLKIA 71
           I       ++SH  +++  G CL+     LVF+ +E+G L D +       A    L + 
Sbjct: 53  IEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMC 112
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
            D+   +AYL       ++ R+   +N L  E  V K  DF ++  + + +   +T    
Sbjct: 113 LDVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKF 169
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA-GRI 168
             + +++PE  S    + KS+V+SFG  ++E+ + G+I
Sbjct: 170 PVK-WASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKI 206

>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 16/161 (9%)
Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI-----FGAPLPRLKIA 71
           I       ++SH  +++  G CL+     LVF+ +E+G L D +       A    L + 
Sbjct: 50  IEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMC 109
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
            D+   +AYL       ++ R+   +N L  E  V K  DF ++  + + +   +T    
Sbjct: 110 LDVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSST---- 162
Query: 132 GTR---GYSAPEYISICVLNEKSNVFSFGAFLFELLA-GRI 168
           GT+    +++PE  S    + KS+V+SFG  ++E+ + G+I
Sbjct: 163 GTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKI 203

>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) In Complex With Staurosporine Length = 304

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 8/152 (5%)
Query: 18  NNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIAS---DI 74
             IT  +Q    ++ K  G  L+     ++ + +  G+  D +   PL   +IA+   +I
Sbjct: 54  QEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGPLDETQIATILREI 113
Query: 75  VNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTR 134
           +  L YLH       + R+ K  N+L +E    K  DF ++  +   +T I  +  +GT 
Sbjct: 114 LKGLDYLH---SEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLT--DTQIKRNXFVGTP 168
Query: 135 GYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
            + APE I     + K++++S G    EL  G
Sbjct: 169 FWMAPEVIKQSAYDSKADIWSLGITAIELARG 200

>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 75/158 (47%), Gaps = 10/158 (6%)
Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI-----FGAPLPRLKIA 71
           I       ++SH  +++  G CL+     LVF+ +E+G L D +       A    L + 
Sbjct: 70  IEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMC 129
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
            D+   +AYL       ++ R+   +N L  E  V K  DF ++  + + +   +T    
Sbjct: 130 LDVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKF 186
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA-GRI 168
             + +++PE  S    + KS+V+SFG  ++E+ + G+I
Sbjct: 187 PVK-WASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKI 223

>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) Length = 304

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 8/153 (5%)
Query: 18  NNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIAS---DI 74
             IT  +Q    ++ K  G  L+     ++ + +  G+  D +   PL   +IA+   +I
Sbjct: 54  QEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGPLDETQIATILREI 113
Query: 75  VNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTR 134
           +  L YLH       + R+ K  N+L +E    K  DF ++  +   +T I  +  +GT 
Sbjct: 114 LKGLDYLH---SEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLT--DTQIKRNTFVGTP 168
Query: 135 GYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
            + APE I     + K++++S G    EL  G 
Sbjct: 169 FWMAPEVIKQSAYDSKADIWSLGITAIELARGE 201

>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta Length = 294

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 8/153 (5%)
Query: 18  NNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIAS---DI 74
             IT  +Q    ++ K  G  L+     ++ + +  G+  D +   PL   +IA+   +I
Sbjct: 74  QEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGPLDETQIATILREI 133
Query: 75  VNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTR 134
           +  L YLH       + R+ K  N+L +E    K  DF ++  +   +T I  +  +GT 
Sbjct: 134 LKGLDYLH---SEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLT--DTQIKRNTFVGTP 188
Query: 135 GYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
            + APE I     + K++++S G    EL  G 
Sbjct: 189 FWMAPEVIKQSAYDSKADIWSLGITAIELARGE 221

>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase 1) Length = 294

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 8/152 (5%)
Query: 18  NNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIAS---DI 74
             IT  +Q    +I +  G  L++    ++ + +  G+  D +   PL    IA+   +I
Sbjct: 66  QEITVLSQCDSPYITRYFGSYLKSTKLWIIMEYLGGGSALDLLKPGPLEETYIATILREI 125
Query: 75  VNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTR 134
           +  L YLH       + R+ K  N+L +E+   K  DF ++  +   +T I  +  +GT 
Sbjct: 126 LKGLDYLH---SERKIHRDIKAANVLLSEQGDVKLADFGVAGQLT--DTQIKRNXFVGTP 180
Query: 135 GYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
            + APE I     + K++++S G    EL  G
Sbjct: 181 FWMAPEVIKQSAYDFKADIWSLGITAIELAKG 212

>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 16/161 (9%)
Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI-----FGAPLPRLKIA 71
           I       ++SH  +++  G CL+     LV + +E+G L D +       A    L + 
Sbjct: 51  IEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFMEHGCLSDYLRTQRGLFAAETLLGMC 110
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
            D+   +AYL       ++ R+   +N L  E  V K  DF ++  + + +   +T    
Sbjct: 111 LDVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSST---- 163
Query: 132 GTR---GYSAPEYISICVLNEKSNVFSFGAFLFELLA-GRI 168
           GT+    +++PE  S    + KS+V+SFG  ++E+ + G+I
Sbjct: 164 GTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKI 204

>pdb|3TXO|A Chain A, Pkc Eta Kinase In Complex With A Naphthyridine Length = 353

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 15/149 (10%)
Query: 26  MSHNH-ILKRIGCCLQTPIPIL-VFQSVEYGTL-----RDCIFGAPLPRLKIASDIVNSL 78
           ++ NH  L ++ CC QTP  +  V + V  G L     +   F     R   A++I+++L
Sbjct: 79  LARNHPFLTQLFCCFQTPDRLFFVMEFVNGGDLMFHIQKSRRFDEARARF-YAAEIISAL 137
Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDF-LLSISIPEGETHITTDRVIGTRGYS 137
            +LH    + I+ R+ K  N+L + E   K  DF +    I  G   +TT    GT  Y 
Sbjct: 138 MFLH---DKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGICNG---VTTATFCGTPDYI 191
Query: 138 APEYISICVLNEKSNVFSFGAFLFELLAG 166
           APE +   +     + ++ G  L+E+L G
Sbjct: 192 APEILQEMLYGPAVDWWAMGVLLYEMLCG 220

>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2 Length = 298

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 71/158 (44%), Gaps = 19/158 (12%)
Query: 20  ITYAAQMSHNHILKRIGCCLQTPIP--ILVFQSVEYGTLRDCIFGAP-----LPRLKIAS 72
           I     + H++I+K  G C         L+ + + YG+LRD +         +  L+  S
Sbjct: 63  IEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTS 122
Query: 73  DIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIG 132
            I   + YL  G  R  + RN  T+NIL   EN  K  DF L+  +P+ + +      + 
Sbjct: 123 QICKGMEYL--GTKR-YIHRNLATRNILVENENRVKIGDFGLTKVLPQDKEYYK----VK 175
Query: 133 TRGYS-----APEYISICVLNEKSNVFSFGAFLFELLA 165
             G S     APE ++    +  S+V+SFG  L+EL  
Sbjct: 176 EPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 213

>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 76/153 (49%), Gaps = 18/153 (11%)
Query: 25  QMSHNHILKRIGCCLQTPIPI-LVFQSVEYGTLRD-------CIFGAPLPRLKIASDIVN 76
           Q+ H+++++ +G  ++    + +V + +  G+L D        + G     LK + D+  
Sbjct: 61  QLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDC-LLKFSLDVCE 119
Query: 77  SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGY 136
           ++ YL        V R+   +N+L +E+NVAK  DF L+      E   T D       +
Sbjct: 120 AMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLT-----KEASSTQDTGKLPVKW 171
Query: 137 SAPEYISICVLNEKSNVFSFGAFLFELLA-GRI 168
           +APE +     + KS+V+SFG  L+E+ + GR+
Sbjct: 172 TAPEALREAAFSTKSDVWSFGILLWEIYSFGRV 204

>pdb|1OMW|A Chain A, Crystal Structure Of The Complex Between G Protein-Coupled Receptor Kinase 2 And Heterotrimeric G Protein Beta 1 And Gamma 2 Subunits Length = 689

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 8/97 (8%)
Query: 71  ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRV 130
           A++I+  L ++H  F   +V R+ K  NIL +E    +  D  L+    + + H +    
Sbjct: 298 AAEIILGLEHMHNRF---VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHAS---- 350
Query: 131 IGTRGYSAPEYISICVLNEKS-NVFSFGAFLFELLAG 166
           +GT GY APE +   V  + S + FS G  LF+LL G
Sbjct: 351 VGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRG 387

>pdb|3PSC|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits Length = 695

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 8/97 (8%)
Query: 71  ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRV 130
           A++I+  L ++H  F   +V R+ K  NIL +E    +  D  L+    + + H +    
Sbjct: 298 AAEIILGLEHMHNRF---VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHAS---- 350
Query: 131 IGTRGYSAPEYISICVLNEKS-NVFSFGAFLFELLAG 166
           +GT GY APE +   V  + S + FS G  LF+LL G
Sbjct: 351 VGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRG 387

>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx4032 Length = 289

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 68  LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITT 127
           + IA      + YLH    + I+ R+ K+ NI  +E+N  K  DF L+            
Sbjct: 123 IDIARQTARGMDYLH---AKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQF 179
Query: 128 DRVIGTRGYSAPEYISICVLNE---KSNVFSFGAFLFELLAGRI 168
           +++ G+  + APE I +   N    +S+V++FG  L+EL+ G++
Sbjct: 180 EQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQL 223

>pdb|3KRW|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol (Soak) Length = 688

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 8/97 (8%)
Query: 71  ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRV 130
           A++I+  L ++H  F   +V R+ K  NIL +E    +  D  L+    + + H +    
Sbjct: 297 AAEIILGLEHMHNRF---VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHAS---- 349
Query: 131 IGTRGYSAPEYISICVLNEKS-NVFSFGAFLFELLAG 166
           +GT GY APE +   V  + S + FS G  LF+LL G
Sbjct: 350 VGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRG 386

>pdb|3CIK|A Chain A, Human Grk2 In Complex With Gbetagamma Subunits Length = 689

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 8/97 (8%)
Query: 71  ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRV 130
           A++I+  L ++H  F   +V R+ K  NIL +E    +  D  L+    + + H +    
Sbjct: 298 AAEIILGLEHMHNRF---VVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHAS---- 350
Query: 131 IGTRGYSAPEYISICVLNEKS-NVFSFGAFLFELLAG 166
           +GT GY APE +   V  + S + FS G  LF+LL G
Sbjct: 351 VGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRG 387

>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 Length = 292

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 68  LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITT 127
           + IA      + YLH    + I+ R+ K+ NI  +E+N  K  DF L+            
Sbjct: 123 IDIARQTARGMDYLH---AKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQF 179
Query: 128 DRVIGTRGYSAPEYISICVLNE---KSNVFSFGAFLFELLAGRI 168
           +++ G+  + APE I +   N    +S+V++FG  L+EL+ G++
Sbjct: 180 EQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQL 223

>pdb|3NYN|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6 In Complex With Sangivamycin Length = 576

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Query: 71  ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRV 130
           A++I   L  LH      IV R+ K +NIL ++    +  D  L++ +PEG+   T    
Sbjct: 292 AAEICCGLEDLHR---ERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQ---TIKGR 345
Query: 131 IGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           +GT GY APE +         + ++ G  L+E++AG+
Sbjct: 346 VGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQ 382

>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human Pdk1 Complex 2 Length = 311

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 53/95 (55%), Gaps = 3/95 (3%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           ++IV++L YLH    + I+ R+ K +NIL NE+   +  DF  +  +         +  +
Sbjct: 139 AEIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFV 195
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
           GT  Y +PE ++    ++ S++++ G  +++L+AG
Sbjct: 196 GTAQYVSPELLTEKSASKSSDLWALGCIIYQLVAG 230

>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain Length = 306

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 91/233 (39%), Gaps = 36/233 (15%)
Query: 26  MSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFG--------------APLPR---- 67
           + H HI++  G C +    ++VF+ + +G L   +                AP P     
Sbjct: 77  LQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQ 136
Query: 68  -LKIASDIVNSLAYL---HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGET 123
            L +AS +   + YL   HF      V R+  T+N L  +  V K  DF +S  I   + 
Sbjct: 137 LLAVASQVAAGMVYLAGLHF------VHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDY 190
Query: 124 HITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCF 183
           +    R +    +  PE I       +S+V+SFG  L+E+       W  L +T    C 
Sbjct: 191 YRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDC- 249
Query: 184 FNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKE-QQLHA--SAQLTLECVNNSP 233
               +    E +R    P  +      C ++E QQ H+       L+ +  +P
Sbjct: 250 ----ITQGRELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQAP 298

>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka Length = 300

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 91/233 (39%), Gaps = 36/233 (15%)
Query: 26  MSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFG--------------APLPR---- 67
           + H HI++  G C +    ++VF+ + +G L   +                AP P     
Sbjct: 71  LQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQ 130
Query: 68  -LKIASDIVNSLAYL---HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGET 123
            L +AS +   + YL   HF      V R+  T+N L  +  V K  DF +S  I   + 
Sbjct: 131 LLAVASQVAAGMVYLAGLHF------VHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDY 184
Query: 124 HITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCF 183
           +    R +    +  PE I       +S+V+SFG  L+E+       W  L +T    C 
Sbjct: 185 YRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDC- 243
Query: 184 FNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKE-QQLHA--SAQLTLECVNNSP 233
               +    E +R    P  +      C ++E QQ H+       L+ +  +P
Sbjct: 244 ----ITQGRELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQAP 292

>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23 Length = 329

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 91/233 (39%), Gaps = 36/233 (15%)
Query: 26  MSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFG--------------APLPR---- 67
           + H HI++  G C +    ++VF+ + +G L   +                AP P     
Sbjct: 100 LQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQ 159
Query: 68  -LKIASDIVNSLAYL---HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGET 123
            L +AS +   + YL   HF      V R+  T+N L  +  V K  DF +S  I   + 
Sbjct: 160 LLAVASQVAAGMVYLAGLHF------VHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDY 213
Query: 124 HITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCF 183
           +    R +    +  PE I       +S+V+SFG  L+E+       W  L +T    C 
Sbjct: 214 YRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDC- 272
Query: 184 FNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKE-QQLHA--SAQLTLECVNNSP 233
               +    E +R    P  +      C ++E QQ H+       L+ +  +P
Sbjct: 273 ----ITQGRELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQAP 321

>pdb|2ACX|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 6 Bound To Amppnp Length = 576

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Query: 71  ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRV 130
           A++I   L  LH      IV R+ K +NIL ++    +  D  L++ +PEG+   T    
Sbjct: 292 AAEICCGLEDLHR---ERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQ---TIKGR 345
Query: 131 IGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           +GT GY APE +         + ++ G  L+E++AG+
Sbjct: 346 VGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQ 382

>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720 Length = 280

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 68  LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITT 127
           + IA      + YLH    + I+ R+ K+ NI  +E+N  K  DF L+            
Sbjct: 111 IDIARQTARGMDYLH---AKSIIHRDLKSNNIFLHEDNTVKIGDFGLATVKSRWSGSHQF 167
Query: 128 DRVIGTRGYSAPEYISICVLNE---KSNVFSFGAFLFELLAGRI 168
           +++ G+  + APE I +   N    +S+V++FG  L+EL+ G++
Sbjct: 168 EQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQL 211

>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain Length = 298

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 19/158 (12%)
Query: 20  ITYAAQMSHNHILKRIGCCLQTPIP--ILVFQSVEYGTLRDCIFGAP-----LPRLKIAS 72
           I     + H++I+K  G C         L+ + + YG+LRD +         +  L+  S
Sbjct: 65  IEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQAHAERIDHIKLLQYTS 124
Query: 73  DIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIG 132
            I   + YL  G  R  + R+  T+NIL   EN  K  DF L+  +P+ +        + 
Sbjct: 125 QICKGMEYL--GTKR-YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXK----VK 177
Query: 133 TRGYS-----APEYISICVLNEKSNVFSFGAFLFELLA 165
             G S     APE ++    +  S+V+SFG  L+EL  
Sbjct: 178 EPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 215

>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With Gleevec Length = 292

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 71/145 (48%), Gaps = 10/145 (6%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFG------APLPRLKIASDIVNSL 78
           ++ H ++++ +G C   P   +V + + YG L D +          +  L +A+ I +++
Sbjct: 84  EIKHPNLVQLLGVCTLEPPFYIVTEYMPYGNLLDYLRECNREEVTAVVLLYMATQISSAM 143
Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA 138
            YL     +  + R+   +N L  E +V K  DF LS  +  G+T+           ++A
Sbjct: 144 EYLE---KKNFIHRDLAARNCLVGENHVVKVADFGLS-RLMTGDTYTAHAGAKFPIKWTA 199
Query: 139 PEYISICVLNEKSNVFSFGAFLFEL 163
           PE ++    + KS+V++FG  L+E+
Sbjct: 200 PESLAYNTFSIKSDVWAFGVLLWEI 224

>pdb|3QC9|A Chain A, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C DOUBLE MUTANT Complexed With Adp And Mg Length = 543

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           + IV+ L +LH    R I+ R+ K +N+L +++   +  D  L++ +  G+T   T    
Sbjct: 296 AQIVSGLEHLH---QRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQTK--TKGYA 350
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           GT G+ APE +     +   + F+ G  L+E++A R
Sbjct: 351 GTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAAR 386

>pdb|3C4X|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.9a Length = 543

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           + IV+ L +LH    R I+ R+ K +N+L +++   +  D  L++ +  G+T   T    
Sbjct: 296 AQIVSGLEHLH---QRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQTK--TKGYA 350
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           GT G+ APE +     +   + F+ G  L+E++A R
Sbjct: 351 GTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAAR 386

>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 73/145 (50%), Gaps = 10/145 (6%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFG------APLPRLKIASDIVNSL 78
           ++ H ++++ +G C + P   ++ + + YG L D +        + +  L +A+ I +++
Sbjct: 272 EIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAM 331
Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA 138
            YL     +  + RN   +N L  E ++ K  DF LS  +  G+T+           ++A
Sbjct: 332 EYLE---KKNFIHRNLAARNCLVGENHLVKVADFGLS-RLMTGDTYTAHAGAKFPIKWTA 387
Query: 139 PEYISICVLNEKSNVFSFGAFLFEL 163
           PE ++    + KS+V++FG  L+E+
Sbjct: 388 PESLAYNKFSIKSDVWAFGVLLWEI 412

>pdb|3T8O|A Chain A, Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolution Length = 543

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           + IV+ L +LH    R I+ R+ K +N+L +++   +  D  L++ +  G+T   T    
Sbjct: 296 AQIVSGLEHLH---QRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQTK--TKGYA 350
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           GT G+ APE +     +   + F+ G  L+E++A R
Sbjct: 351 GTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAAR 386

>pdb|3C4W|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.7a Length = 543

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           + IV+ L +LH    R I+ R+ K +N+L +++   +  D  L++ +  G+T   T    
Sbjct: 296 AQIVSGLEHLH---QRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQTK--TKGYA 350
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           GT G+ APE +     +   + F+ G  L+E++A R
Sbjct: 351 GTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAAR 386

>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 76/153 (49%), Gaps = 18/153 (11%)
Query: 25  QMSHNHILKRIGCCLQTPIPI-LVFQSVEYGTLRD-------CIFGAPLPRLKIASDIVN 76
           Q+ H+++++ +G  ++    + +V + +  G+L D        + G     LK + D+  
Sbjct: 242 QLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDC-LLKFSLDVCE 300
Query: 77  SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGY 136
           ++ YL        V R+   +N+L +E+NVAK  DF L+      E   T D       +
Sbjct: 301 AMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLT-----KEASSTQDTGKLPVKW 352
Query: 137 SAPEYISICVLNEKSNVFSFGAFLFELLA-GRI 168
           +APE +     + KS+V+SFG  L+E+ + GR+
Sbjct: 353 TAPEALREKKFSTKSDVWSFGILLWEIYSFGRV 385

>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A Potent And Specific Pan-Janus Kinase Inhibitor Length = 293

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 19/158 (12%)
Query: 20  ITYAAQMSHNHILKRIGCCLQTPIP--ILVFQSVEYGTLRDCIFGAP-----LPRLKIAS 72
           I     + H++I+K  G C         L+ + + YG+LRD +         +  L+  S
Sbjct: 60  IEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTS 119
Query: 73  DIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIG 132
            I   + YL  G  R  + R+  T+NIL   EN  K  DF L+  +P+ +        + 
Sbjct: 120 QICKGMEYL--GTKR-YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXK----VK 172
Query: 133 TRGYS-----APEYISICVLNEKSNVFSFGAFLFELLA 165
             G S     APE ++    +  S+V+SFG  L+EL  
Sbjct: 173 EPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 210

>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors Length = 293

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 19/158 (12%)
Query: 20  ITYAAQMSHNHILKRIGCCLQTPIP--ILVFQSVEYGTLRDCIFGAP-----LPRLKIAS 72
           I     + H++I+K  G C         L+ + + YG+LRD +         +  L+  S
Sbjct: 61  IEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTS 120
Query: 73  DIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIG 132
            I   + YL  G  R  + R+  T+NIL   EN  K  DF L+  +P+ +        + 
Sbjct: 121 QICKGMEYL--GTKR-YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXK----VK 173
Query: 133 TRGYS-----APEYISICVLNEKSNVFSFGAFLFELLA 165
             G S     APE ++    +  S+V+SFG  L+EL  
Sbjct: 174 EPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 211

>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8 Length = 298

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 19/158 (12%)
Query: 20  ITYAAQMSHNHILKRIGCCLQTPIP--ILVFQSVEYGTLRDCIFGAP-----LPRLKIAS 72
           I     + H++I+K  G C         L+ + + YG+LRD +         +  L+  S
Sbjct: 65  IEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTS 124
Query: 73  DIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIG 132
            I   + YL  G  R  + R+  T+NIL   EN  K  DF L+  +P+ +        + 
Sbjct: 125 QICKGMEYL--GTKR-YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXK----VK 177
Query: 133 TRGYS-----APEYISICVLNEKSNVFSFGAFLFELLA 165
             G S     APE ++    +  S+V+SFG  L+EL  
Sbjct: 178 EPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 215

>pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric Activator Ps171 Bound To The Pif-Pocket Length = 311

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           ++IV++L YLH    + I+ R+ K +NIL NE+   +  DF  +  +         +  +
Sbjct: 139 AEIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFV 195
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
           GT  Y +PE ++     + S++++ G  +++L+AG
Sbjct: 196 GTAQYVSPELLTEKSAXKSSDLWALGCIIYQLVAG 230

>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine Inhibitor Length = 301

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 19/158 (12%)
Query: 20  ITYAAQMSHNHILKRIGCCLQTPIP--ILVFQSVEYGTLRDCIFGAP-----LPRLKIAS 72
           I     + H++I+K  G C         L+ + + YG+LRD +         +  L+  S
Sbjct: 62  IEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTS 121
Query: 73  DIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIG 132
            I   + YL  G  R  + R+  T+NIL   EN  K  DF L+  +P+ +        + 
Sbjct: 122 QICKGMEYL--GTKR-YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXK----VK 174
Query: 133 TRGYS-----APEYISICVLNEKSNVFSFGAFLFELLA 165
             G S     APE ++    +  S+V+SFG  L+EL  
Sbjct: 175 EPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 212

>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 76/153 (49%), Gaps = 18/153 (11%)
Query: 25  QMSHNHILKRIGCCLQTPIPI-LVFQSVEYGTLRD-------CIFGAPLPRLKIASDIVN 76
           Q+ H+++++ +G  ++    + +V + +  G+L D        + G     LK + D+  
Sbjct: 70  QLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDC-LLKFSLDVCE 128
Query: 77  SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGY 136
           ++ YL        V R+   +N+L +E+NVAK  DF L+      E   T D       +
Sbjct: 129 AMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLT-----KEASSTQDTGKLPVKW 180
Query: 137 SAPEYISICVLNEKSNVFSFGAFLFELLA-GRI 168
           +APE +     + KS+V+SFG  L+E+ + GR+
Sbjct: 181 TAPEALREKKFSTKSDVWSFGILLWEIYSFGRV 213

>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8 Length = 300

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 19/158 (12%)
Query: 20  ITYAAQMSHNHILKRIGCCLQTPIP--ILVFQSVEYGTLRDCIFGAP-----LPRLKIAS 72
           I     + H++I+K  G C         L+ + + YG+LRD +         +  L+  S
Sbjct: 67  IEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTS 126
Query: 73  DIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIG 132
            I   + YL  G  R  + R+  T+NIL   EN  K  DF L+  +P+ +        + 
Sbjct: 127 QICKGMEYL--GTKR-YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXK----VK 179
Query: 133 TRGYS-----APEYISICVLNEKSNVFSFGAFLFELLA 165
             G S     APE ++    +  S+V+SFG  L+EL  
Sbjct: 180 EPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 217

>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine Length = 267

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 91/225 (40%), Gaps = 43/225 (19%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKI------ASDIVNSL 78
           Q+ H  +++      Q PI I+  + +E G+L D +      +L I      A+ I   +
Sbjct: 60  QLQHQRLVRLYAVVTQEPIYIIT-EYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGM 118
Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA 138
           A++     R  + RN +  NIL ++    K  DF L+  I + E +   +       ++A
Sbjct: 119 AFIE---ERNYIHRNLRAANILVSDTLSCKIADFGLARLIEDNE-YTAREGAKFPIKWTA 174
Query: 139 PEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRF 197
           PE I+      KS+V+SFG  L E++  GRI                            +
Sbjct: 175 PEAINYGTFTIKSDVWSFGILLTEIVTHGRIP---------------------------Y 207
Query: 198 TGIPAPIIVQDIP----CIEKEQQLHASAQLTLECVNNSPEDRPT 238
            G+  P ++Q++      +  +       QL   C    PEDRPT
Sbjct: 208 PGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPT 252

>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound With Ppy-A Length = 288

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 73/145 (50%), Gaps = 10/145 (6%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFG------APLPRLKIASDIVNSL 78
           ++ H ++++ +G C + P   ++ + + YG L D +        + +  L +A+ I +++
Sbjct: 65  EIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAM 124
Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA 138
            YL     +  + R+   +N L  E ++ K  DF LS  +  G+T+           ++A
Sbjct: 125 EYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLS-RLMTGDTYTAHAGAKFPIKWTA 180
Query: 139 PEYISICVLNEKSNVFSFGAFLFEL 163
           PE ++    + KS+V++FG  L+E+
Sbjct: 181 PESLAYNKFSIKSDVWAFGVLLWEI 205

>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 19/158 (12%)
Query: 20  ITYAAQMSHNHILKRIGCCLQTPIP--ILVFQSVEYGTLRDCIFGAP-----LPRLKIAS 72
           I     + H++I+K  G C         L+ + + YG+LRD +         +  L+  S
Sbjct: 69  IEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTS 128
Query: 73  DIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIG 132
            I   + YL  G  R  + R+  T+NIL   EN  K  DF L+  +P+ +        + 
Sbjct: 129 QICKGMEYL--GTKR-YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXK----VK 181
Query: 133 TRGYS-----APEYISICVLNEKSNVFSFGAFLFELLA 165
             G S     APE ++    +  S+V+SFG  L+EL  
Sbjct: 182 EPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 219

>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound With A Dfg- Out Inhibitor Ap24589 Length = 284

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 73/145 (50%), Gaps = 10/145 (6%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFG------APLPRLKIASDIVNSL 78
           ++ H ++++ +G C + P   ++ + + YG L D +        + +  L +A+ I +++
Sbjct: 65  EIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAM 124
Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA 138
            YL     +  + R+   +N L  E ++ K  DF LS  +  G+T+           ++A
Sbjct: 125 EYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLS-RLMTGDTYTAHAGAKFPIKWTA 180
Query: 139 PEYISICVLNEKSNVFSFGAFLFEL 163
           PE ++    + KS+V++FG  L+E+
Sbjct: 181 PESLAYNKFSIKSDVWAFGVLLWEI 205

>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2 Length = 301

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 19/158 (12%)
Query: 20  ITYAAQMSHNHILKRIGCCLQTPIP--ILVFQSVEYGTLRDCIFGAP-----LPRLKIAS 72
           I     + H++I+K  G C         L+ + + YG+LRD +         +  L+  S
Sbjct: 68  IEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTS 127
Query: 73  DIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIG 132
            I   + YL  G  R  + R+  T+NIL   EN  K  DF L+  +P+ +        + 
Sbjct: 128 QICKGMEYL--GTKR-YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXK----VK 180
Query: 133 TRGYS-----APEYISICVLNEKSNVFSFGAFLFELLA 165
             G S     APE ++    +  S+V+SFG  L+EL  
Sbjct: 181 EPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 218

>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor Length = 303

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 19/158 (12%)
Query: 20  ITYAAQMSHNHILKRIGCCLQTPIP--ILVFQSVEYGTLRDCIFGAP-----LPRLKIAS 72
           I     + H++I+K  G C         L+ + + YG+LRD +         +  L+  S
Sbjct: 66  IEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTS 125
Query: 73  DIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIG 132
            I   + YL  G  R  + R+  T+NIL   EN  K  DF L+  +P+ +        + 
Sbjct: 126 QICKGMEYL--GTKR-YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXK----VK 178
Query: 133 TRGYS-----APEYISICVLNEKSNVFSFGAFLFELLA 165
             G S     APE ++    +  S+V+SFG  L+EL  
Sbjct: 179 EPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 216

>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors Length = 311

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 19/158 (12%)
Query: 20  ITYAAQMSHNHILKRIGCCLQTPIP--ILVFQSVEYGTLRDCIFGAP-----LPRLKIAS 72
           I     + H++I+K  G C         L+ + + YG+LRD +         +  L+  S
Sbjct: 80  IEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTS 139
Query: 73  DIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIG 132
            I   + YL  G  R  + R+  T+NIL   EN  K  DF L+  +P+ +        + 
Sbjct: 140 QICKGMEYL--GTKR-YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXK----VK 192
Query: 133 TRGYS-----APEYISICVLNEKSNVFSFGAFLFELLA 165
             G S     APE ++    +  S+V+SFG  L+EL  
Sbjct: 193 EPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 230

>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent 2,8-Diaryl Quinoxaline Inhibitor Length = 295

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 19/158 (12%)
Query: 20  ITYAAQMSHNHILKRIGCCLQTPIP--ILVFQSVEYGTLRDCIFGAP-----LPRLKIAS 72
           I     + H++I+K  G C         L+ + + YG+LRD +         +  L+  S
Sbjct: 62  IEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTS 121
Query: 73  DIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIG 132
            I   + YL  G  R  + R+  T+NIL   EN  K  DF L+  +P+ +        + 
Sbjct: 122 QICKGMEYL--GTKR-YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXK----VK 174
Query: 133 TRGYS-----APEYISICVLNEKSNVFSFGAFLFELLA 165
             G S     APE ++    +  S+V+SFG  L+EL  
Sbjct: 175 EPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 212

>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 263

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 76/153 (49%), Gaps = 18/153 (11%)
Query: 25  QMSHNHILKRIGCCLQTPIPI-LVFQSVEYGTLRD-------CIFGAPLPRLKIASDIVN 76
           Q+ H+++++ +G  ++    + +V + +  G+L D        + G     LK + D+  
Sbjct: 55  QLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDC-LLKFSLDVCE 113
Query: 77  SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGY 136
           ++ YL        V R+   +N+L +E+NVAK  DF L+      E   T D       +
Sbjct: 114 AMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLT-----KEASSTQDTGKLPVKW 165
Query: 137 SAPEYISICVLNEKSNVFSFGAFLFELLA-GRI 168
           +APE +     + KS+V+SFG  L+E+ + GR+
Sbjct: 166 TAPEALREKKFSTKSDVWSFGILLWEIYSFGRV 198

>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 326

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 19/158 (12%)
Query: 20  ITYAAQMSHNHILKRIGCCLQTPIP--ILVFQSVEYGTLRDCIFGAP-----LPRLKIAS 72
           I     + H++I+K  G C         L+ + + YG+LRD +         +  L+  S
Sbjct: 93  IEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTS 152
Query: 73  DIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIG 132
            I   + YL  G  R  + R+  T+NIL   EN  K  DF L+  +P+ +        + 
Sbjct: 153 QICKGMEYL--GTKR-YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXK----VK 205
Query: 133 TRGYS-----APEYISICVLNEKSNVFSFGAFLFELLA 165
             G S     APE ++    +  S+V+SFG  L+EL  
Sbjct: 206 EPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 243

>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective Inhibitors Of Jak2 Length = 313

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 19/158 (12%)
Query: 20  ITYAAQMSHNHILKRIGCCLQTPIP--ILVFQSVEYGTLRDCIFGAP-----LPRLKIAS 72
           I     + H++I+K  G C         L+ + + YG+LRD +         +  L+  S
Sbjct: 80  IEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTS 139
Query: 73  DIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIG 132
            I   + YL  G  R  + R+  T+NIL   EN  K  DF L+  +P+ +        + 
Sbjct: 140 QICKGMEYL--GTKR-YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXK----VK 192
Query: 133 TRGYS-----APEYISICVLNEKSNVFSFGAFLFELLA 165
             G S     APE ++    +  S+V+SFG  L+EL  
Sbjct: 193 EPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 230

>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii Inhibtor Nvp-Bbt594 Length = 295

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 19/158 (12%)
Query: 20  ITYAAQMSHNHILKRIGCCLQTPIP--ILVFQSVEYGTLRDCIFGAP-----LPRLKIAS 72
           I     + H++I+K  G C         L+ + + YG+LRD +         +  L+  S
Sbjct: 62  IEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTS 121
Query: 73  DIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIG 132
            I   + YL  G  R  + R+  T+NIL   EN  K  DF L+  +P+ +        + 
Sbjct: 122 QICKGMEYL--GTKR-YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEFFK----VK 174
Query: 133 TRGYS-----APEYISICVLNEKSNVFSFGAFLFELLA 165
             G S     APE ++    +  S+V+SFG  L+EL  
Sbjct: 175 EPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 212

>pdb|2W4O|A Chain A, Crystal Structure Of Human Camk4 In Complex With 4-Amino( Sulfamoyl-Phenylamino)-Triazole-Carbothioic Acid (2,6- Difluoro-Phenyl)-Amide) Length = 349

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 72/150 (48%), Gaps = 15/150 (10%)
Query: 25  QMSHNHILKRIGCCLQTPIPI-LVFQSVEYGTLRDCIFGAPLPRLKIASD----IVNSLA 79
           ++SH +I+K +    +TP  I LV + V  G L D I        + A+D    I+ ++A
Sbjct: 104 RLSHPNIIK-LKEIFETPTEISLVLELVTGGELFDRIVEKGYYSERDAADAVKQILEAVA 162
Query: 80  YLHFGFPRPIVLRNFKTQNILFNE---ENVAKWFDFLLSISIPEGETHITTDRVIGTRGY 136
           YLH      IV R+ K +N+L+     +   K  DF LS  +   E  +    V GT GY
Sbjct: 163 YLH---ENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIV---EHQVLMKTVCGTPGY 216
Query: 137 SAPEYISICVLNEKSNVFSFGAFLFELLAG 166
            APE +  C    + +++S G   + LL G
Sbjct: 217 CAPEILRGCAYGPEVDMWSVGIITYILLCG 246

>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 73/145 (50%), Gaps = 10/145 (6%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTL----RDCIFGA--PLPRLKIASDIVNSL 78
           ++ H ++++ +G C + P   ++ + + YG L    R+C       +  L +A+ I +++
Sbjct: 311 EIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAM 370
Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA 138
            YL     +  + RN   +N L  E ++ K  DF LS  +  G+T+           ++A
Sbjct: 371 EYLE---KKNFIHRNLAARNCLVGENHLVKVADFGLS-RLMTGDTYTAHAGAKFPIKWTA 426
Query: 139 PEYISICVLNEKSNVFSFGAFLFEL 163
           PE ++    + KS+V++FG  L+E+
Sbjct: 427 PESLAYNKFSIKSDVWAFGVLLWEI 451

>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment Inhibitor 1f8 Length = 316

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           ++IV++L YLH    + I+ R+ K +NIL NE+   +  DF  +  +         +  +
Sbjct: 144 AEIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFV 200
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
           GT  Y +PE ++     + S++++ G  +++L+AG
Sbjct: 201 GTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 235

>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A Dfg-Out Inhibitor Ap24534 Length = 284

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 73/145 (50%), Gaps = 10/145 (6%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFG------APLPRLKIASDIVNSL 78
           ++ H ++++ +G C + P   ++ + + YG L D +        + +  L +A+ I +++
Sbjct: 65  EIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAM 124
Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA 138
            YL     +  + R+   +N L  E ++ K  DF LS  +  G+T+           ++A
Sbjct: 125 EYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLS-RLMTGDTYTAHAGAKFPIKWTA 180
Query: 139 PEYISICVLNEKSNVFSFGAFLFEL 163
           PE ++    + KS+V++FG  L+E+
Sbjct: 181 PESLAYNKFSIKSDVWAFGVLLWEI 205

>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent Kinase- 1 (Pdk-1)catalytic Domain Bound To A Dibenzonaphthyridine Inhibitor Length = 312

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           ++IV++L YLH    + I+ R+ K +NIL NE+   +  DF  +  +         +  +
Sbjct: 140 AEIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFV 196
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
           GT  Y +PE ++     + S++++ G  +++L+AG
Sbjct: 197 GTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 231

>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In Complex With Compound 9 Length = 311

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           ++IV++L YLH    + I+ R+ K +NIL NE+   +  DF  +  +         +  +
Sbjct: 139 AEIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFV 195
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
           GT  Y +PE ++     + S++++ G  +++L+AG
Sbjct: 196 GTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 230

>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           ++IV++L YLH    + I+ R+ K +NIL NE+   +  DF  +  +         +  +
Sbjct: 137 AEIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFV 193
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
           GT  Y +PE ++     + S++++ G  +++L+AG
Sbjct: 194 GTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 228

>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a Length = 288

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 73/145 (50%), Gaps = 10/145 (6%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFG------APLPRLKIASDIVNSL 78
           ++ H ++++ +G C + P   ++ + + YG L D +        + +  L +A+ I +++
Sbjct: 65  EIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAM 124
Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA 138
            YL     +  + R+   +N L  E ++ K  DF LS  +  G+T+           ++A
Sbjct: 125 EYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLS-RLMTGDTYTAHAGAKFPIKWTA 180
Query: 139 PEYISICVLNEKSNVFSFGAFLFEL 163
           PE ++    + KS+V++FG  L+E+
Sbjct: 181 PESLAYNKFSIKSDVWAFGVLLWEI 205

>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through Fragment-Based Lead Discovery Length = 311

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           ++IV++L YLH    + I+ R+ K +NIL NE+   +  DF  +  +         +  +
Sbjct: 139 AEIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFV 195
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
           GT  Y +PE ++     + S++++ G  +++L+AG
Sbjct: 196 GTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 230

>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i Length = 312

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           ++IV++L YLH    + I+ R+ K +NIL NE+   +  DF  +  +         +  +
Sbjct: 140 AEIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFV 196
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
           GT  Y +PE ++     + S++++ G  +++L+AG
Sbjct: 197 GTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 231

>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           ++IV++L YLH    + I+ R+ K +NIL NE+   +  DF  +  +         +  +
Sbjct: 137 AEIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFV 193
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
           GT  Y +PE ++     + S++++ G  +++L+AG
Sbjct: 194 GTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 228

>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Ly333531 Length = 310

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           ++IV++L YLH    + I+ R+ K +NIL NE+   +  DF  +  +         +  +
Sbjct: 137 AEIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFV 193
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
           GT  Y +PE ++     + S++++ G  +++L+AG
Sbjct: 194 GTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 228

>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3- Phosphoinositide Dependent Kinase (Pdk1) Length = 311

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           ++IV++L YLH    + I+ R+ K +NIL NE+   +  DF  +  +         +  +
Sbjct: 139 AEIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFV 195
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
           GT  Y +PE ++     + S++++ G  +++L+AG
Sbjct: 196 GTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 230

>pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length = 314

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           ++IV++L YLH    + I+ R+ K +NIL NE+   +  DF  +  +         +  +
Sbjct: 142 AEIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFV 198
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
           GT  Y +PE ++     + S++++ G  +++L+AG
Sbjct: 199 GTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 233

>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i Mutant In Complex With Dcc-2036 Length = 277

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 72/145 (49%), Gaps = 10/145 (6%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA------PLPRLKIASDIVNSL 78
           ++ H ++++ +G C + P   ++ + + YG L D +          +  L +A+ I +++
Sbjct: 70  EIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAM 129
Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA 138
            YL     +  + R+   +N L  E ++ K  DF LS  +  G+T+           ++A
Sbjct: 130 EYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLS-RLMTGDTYTAHAGAKFPIKWTA 185
Query: 139 PEYISICVLNEKSNVFSFGAFLFEL 163
           PE ++    + KS+V++FG  L+E+
Sbjct: 186 PESLAYNKFSIKSDVWAFGVLLWEI 210

>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8 Length = 286

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 71  ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRV 130
            ++IV++L YLH    + I+ R+ K +NIL NE+   +  DF  +  +         +  
Sbjct: 114 TAEIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXF 170
Query: 131 IGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
           +GT  Y +PE ++     + S++++ G  +++L+AG
Sbjct: 171 VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 206

>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A Small Molecule Inhibitor Length = 293

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 73/145 (50%), Gaps = 10/145 (6%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFG------APLPRLKIASDIVNSL 78
           ++ H ++++ +G C + P   ++ + + YG L D +        + +  L +A+ I +++
Sbjct: 70  EIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAM 129
Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA 138
            YL     +  + R+   +N L  E ++ K  DF LS  +  G+T+           ++A
Sbjct: 130 EYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLS-RLMTGDTYTAHAGAKFPIKWTA 185
Query: 139 PEYISICVLNEKSNVFSFGAFLFEL 163
           PE ++    + KS+V++FG  L+E+
Sbjct: 186 PESLAYNKFSIKSDVWAFGVLLWEI 210

>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Bim-3 Length = 286

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 71  ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRV 130
            ++IV++L YLH    + I+ R+ K +NIL NE+   +  DF  +  +         +  
Sbjct: 115 TAEIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXF 171
Query: 131 IGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
           +GT  Y +PE ++     + S++++ G  +++L+AG
Sbjct: 172 VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 207

>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain In Complex With Atp Length = 311

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           ++IV++L YLH    + I+ R+ K +NIL NE+   +  DF  +  +         +  +
Sbjct: 139 AEIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFV 195
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
           GT  Y +PE ++     + S++++ G  +++L+AG
Sbjct: 196 GTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 230

>pdb|1Z5M|A Chain A, Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl) Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2- Dimethylpropanediamide Complexed With Human Pdk1 Length = 286

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 71  ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRV 130
            ++IV++L YLH    + I+ R+ K +NIL NE+   +  DF  +  +         +  
Sbjct: 113 TAEIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXF 169
Query: 131 IGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
           +GT  Y +PE ++     + S++++ G  +++L+AG
Sbjct: 170 VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 205

>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain Length = 310

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           ++IV++L YLH    + I+ R+ K +NIL NE+   +  DF  +  +         +  +
Sbjct: 137 AEIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANAFV 193
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
           GT  Y +PE ++     + S++++ G  +++L+AG
Sbjct: 194 GTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 228

>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1 Catalytic Domain Length = 289

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 71  ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRV 130
            ++IV++L YLH    + I+ R+ K +NIL NE+   +  DF  +  +         +  
Sbjct: 116 TAEIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXF 172
Query: 131 IGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
           +GT  Y +PE ++     + S++++ G  +++L+AG
Sbjct: 173 VGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 208

>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck In Complex With Non-selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 90/225 (40%), Gaps = 43/225 (19%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKI------ASDIVNSL 78
           Q+ H  +++      Q PI I+  + +E G+L D +      +L I      A+ I   +
Sbjct: 64  QLQHQRLVRLYAVVTQEPIYIIT-EYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGM 122
Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA 138
           A++     R  + R+ +  NIL ++    K  DF L+  I + E           + ++A
Sbjct: 123 AFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDAEXTAREGAKFPIK-WTA 178
Query: 139 PEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRF 197
           PE I+      KS+V+SFG  L E++  GRI                            +
Sbjct: 179 PEAINYGTFTIKSDVWSFGILLTEIVTHGRIP---------------------------Y 211
Query: 198 TGIPAPIIVQDIP----CIEKEQQLHASAQLTLECVNNSPEDRPT 238
            G+  P ++Q++      +  +       QL   C    PEDRPT
Sbjct: 212 PGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPT 256

>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck), Activated Form (Auto-Phosphorylated On Tyr394) Length = 271

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 90/225 (40%), Gaps = 43/225 (19%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKI------ASDIVNSL 78
           Q+ H  +++      Q PI I+  + +E G+L D +      +L I      A+ I   +
Sbjct: 64  QLQHQRLVRLYAVVTQEPIYIIT-EYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGM 122
Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA 138
           A++     R  + R+ +  NIL ++    K  DF L+  I + E           + ++A
Sbjct: 123 AFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIK-WTA 178
Query: 139 PEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRF 197
           PE I+      KS+V+SFG  L E++  GRI                            +
Sbjct: 179 PEAINYGTFTIKSDVWSFGILLTEIVTHGRIP---------------------------Y 211
Query: 198 TGIPAPIIVQDIP----CIEKEQQLHASAQLTLECVNNSPEDRPT 238
            G+  P ++Q++      +  +       QL   C    PEDRPT
Sbjct: 212 PGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPT 256

>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1 Bound To Lck Length = 272

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 90/225 (40%), Gaps = 43/225 (19%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKI------ASDIVNSL 78
           Q+ H  +++      Q PI I+  + +E G+L D +      +L I      A+ I   +
Sbjct: 65  QLQHQRLVRLYAVVTQEPIYIIT-EYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGM 123
Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA 138
           A++     R  + R+ +  NIL ++    K  DF L+  I + E           + ++A
Sbjct: 124 AFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIK-WTA 179
Query: 139 PEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRF 197
           PE I+      KS+V+SFG  L E++  GRI                            +
Sbjct: 180 PEAINYGTFTIKSDVWSFGILLTEIVTHGRIP---------------------------Y 212
Query: 198 TGIPAPIIVQDIP----CIEKEQQLHASAQLTLECVNNSPEDRPT 238
            G+  P ++Q++      +  +       QL   C    PEDRPT
Sbjct: 213 PGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPT 257

>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead Compound Length = 292

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           ++IV++L YLH    + I+ R+ K +NIL NE+   +  DF  +  +         +  +
Sbjct: 121 AEIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFV 177
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
           GT  Y +PE ++     + S++++ G  +++L+AG
Sbjct: 178 GTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 212

>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7 Length = 311

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           ++IV++L YLH    + I+ R+ K +NIL NE+   +  DF  +  +         +  +
Sbjct: 136 AEIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFV 192
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
           GT  Y +PE ++     + S++++ G  +++L+AG
Sbjct: 193 GTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 227

>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6 Length = 311

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           ++IV++L YLH    + I+ R+ K +NIL NE+   +  DF  +  +         +  +
Sbjct: 136 AEIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFV 192
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
           GT  Y +PE ++     + S++++ G  +++L+AG
Sbjct: 193 GTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 227

>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43 Bound To Lck Length = 273

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 90/225 (40%), Gaps = 43/225 (19%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKI------ASDIVNSL 78
           Q+ H  +++      Q PI I+  + +E G+L D +      +L I      A+ I   +
Sbjct: 66  QLQHQRLVRLYAVVTQEPIYIIT-EYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGM 124
Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA 138
           A++     R  + R+ +  NIL ++    K  DF L+  I + E           + ++A
Sbjct: 125 AFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIK-WTA 180
Query: 139 PEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRF 197
           PE I+      KS+V+SFG  L E++  GRI                            +
Sbjct: 181 PEAINYGTFTIKSDVWSFGILLTEIVTHGRIP---------------------------Y 213
Query: 198 TGIPAPIIVQDIP----CIEKEQQLHASAQLTLECVNNSPEDRPT 238
            G+  P ++Q++      +  +       QL   C    PEDRPT
Sbjct: 214 PGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPT 258

>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 97/220 (44%), Gaps = 35/220 (15%)
Query: 26  MSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFG-----APLPRL-KIASDIVNSLA 79
           + H+ ++K      + PI I+  + +  G+L D +        PLP+L   ++ I   +A
Sbjct: 240 LQHDKLVKLHAVVTKEPIYIIT-EFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMA 298
Query: 80  YLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAP 139
           ++     R  + R+ +  NIL +   V K  DF L+  I + E           + ++AP
Sbjct: 299 FIE---QRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIK-WTAP 354
Query: 140 EYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFT 198
           E I+      KS+V+SFG  L E++  GRI           +    N  +   LE  R  
Sbjct: 355 EAINFGSFTIKSDVWSFGILLMEIVTYGRI----------PYPGMSNPEVIRALE--RGY 402
Query: 199 GIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT 238
            +P P   ++ P     ++L+    + + C  N PE+RPT
Sbjct: 403 RMPRP---ENCP-----EELY---NIMMRCWKNRPEERPT 431

>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg- 1009247 Length = 270

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 98/220 (44%), Gaps = 35/220 (15%)
Query: 26  MSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFG-----APLPRL-KIASDIVNSLA 79
           + H+ ++K      + PI I+  + +  G+L D +        PLP+L   ++ I   +A
Sbjct: 67  LQHDKLVKLHAVVTKEPIYIIT-EFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMA 125
Query: 80  YLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAP 139
           ++     R  + R+ +  NIL +   V K  DF L+  I + E +   +       ++AP
Sbjct: 126 FIE---QRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNE-YTAREGAKFPIKWTAP 181
Query: 140 EYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFT 198
           E I+      KS+V+SFG  L E++  GRI           +    N  +   LE  R  
Sbjct: 182 EAINFGSFTIKSDVWSFGILLMEIVTYGRI----------PYPGMSNPEVIRALE--RGY 229
Query: 199 GIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT 238
            +P P   ++ P     ++L+    + + C  N PE+RPT
Sbjct: 230 RMPRP---ENCP-----EELY---NIMMRCWKNRPEERPT 258

>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 277

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 72/145 (49%), Gaps = 10/145 (6%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFG------APLPRLKIASDIVNSL 78
           ++ H ++++ +G C + P   ++ + + YG L D +        + +  L +A+ I +++
Sbjct: 63  EIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAM 122
Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA 138
            YL     +  + R+   +N L  E ++ K  DF LS  +  G+T            ++A
Sbjct: 123 EYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLS-RLMTGDTXTAHAGAKFPIKWTA 178
Query: 139 PEYISICVLNEKSNVFSFGAFLFEL 163
           PE ++    + KS+V++FG  L+E+
Sbjct: 179 PESLAYNKFSIKSDVWAFGVLLWEI 203

>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck In Complex With Non-Selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 90/225 (40%), Gaps = 43/225 (19%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKI------ASDIVNSL 78
           Q+ H  +++      Q PI I+  + +E G+L D +      +L I      A+ I   +
Sbjct: 64  QLQHQRLVRLYAVVTQEPIYIIT-EYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGM 122
Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA 138
           A++     R  + R+ +  NIL ++    K  DF L+  I + E           + ++A
Sbjct: 123 AFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIK-WTA 178
Query: 139 PEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRF 197
           PE I+      KS+V+SFG  L E++  GRI                            +
Sbjct: 179 PEAINYGTFTIKSDVWSFGILLTEIVTHGRIP---------------------------Y 211
Query: 198 TGIPAPIIVQDIP----CIEKEQQLHASAQLTLECVNNSPEDRPT 238
            G+  P ++Q++      +  +       QL   C    PEDRPT
Sbjct: 212 PGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPT 256

>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck Length = 265

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 91/225 (40%), Gaps = 43/225 (19%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKI------ASDIVNSL 78
           Q+ H  +++      Q PI I+  + +E G+L D +      +L I      A+ I   +
Sbjct: 59  QLQHQRLVRLYAVVTQEPIYIIT-EYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGM 117
Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA 138
           A++     R  + R+ +  NIL ++    K  DF L+  I + E +   +       ++A
Sbjct: 118 AFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE-YTAREGAKFPIKWTA 173
Query: 139 PEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRF 197
           PE I+      KS+V+SFG  L E++  GRI                            +
Sbjct: 174 PEAINYGTFTIKSDVWSFGILLTEIVTHGRIP---------------------------Y 206
Query: 198 TGIPAPIIVQDIP----CIEKEQQLHASAQLTLECVNNSPEDRPT 238
            G+  P ++Q++      +  +       QL   C    PEDRPT
Sbjct: 207 PGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPT 251

>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck Length = 271

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 91/225 (40%), Gaps = 43/225 (19%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKI------ASDIVNSL 78
           Q+ H  +++      Q PI I+  + +E G+L D +      +L I      A+ I   +
Sbjct: 64  QLQHQRLVRLYAVVTQEPIYIIT-EYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGM 122
Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA 138
           A++     R  + R+ +  NIL ++    K  DF L+  I + E +   +       ++A
Sbjct: 123 AFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE-YTAREGAKFPIKWTA 178
Query: 139 PEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRF 197
           PE I+      KS+V+SFG  L E++  GRI                            +
Sbjct: 179 PEAINYGTFTIKSDVWSFGILLTEIVTHGRIP---------------------------Y 211
Query: 198 TGIPAPIIVQDIP----CIEKEQQLHASAQLTLECVNNSPEDRPT 238
            G+  P ++Q++      +  +       QL   C    PEDRPT
Sbjct: 212 PGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPT 256

>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant Abl Mutant In Complex With The Aurora Kinase Inhibitor Vx-680 Length = 287

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 72/145 (49%), Gaps = 10/145 (6%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA------PLPRLKIASDIVNSL 78
           ++ H ++++ +G C + P   ++ + + YG L D +          +  L +A+ I +++
Sbjct: 66  EIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAM 125
Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA 138
            YL     +  + R+   +N L  E ++ K  DF LS  +  G+T+           ++A
Sbjct: 126 EYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLS-RLMTGDTYTAPAGAKFPIKWTA 181
Query: 139 PEYISICVLNEKSNVFSFGAFLFEL 163
           PE ++    + KS+V++FG  L+E+
Sbjct: 182 PESLAYNKFSIKSDVWAFGVLLWEI 206

>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 72/145 (49%), Gaps = 10/145 (6%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA------PLPRLKIASDIVNSL 78
           ++ H ++++ +G C + P   ++ + + YG L D +          +  L +A+ I +++
Sbjct: 67  EIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAM 126
Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA 138
            YL     +  + R+   +N L  E ++ K  DF LS  +  G+T+           ++A
Sbjct: 127 EYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLS-RLMTGDTYTAPAGAKFPIKWTA 182
Query: 139 PEYISICVLNEKSNVFSFGAFLFEL 163
           PE ++    + KS+V++FG  L+E+
Sbjct: 183 PESLAYNKFSIKSDVWAFGVLLWEI 207

>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule Inhibitor Length = 288

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 90/225 (40%), Gaps = 43/225 (19%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKI------ASDIVNSL 78
           Q+ H  +++      Q PI I+  + +E G+L D +      +L I      A+ I   +
Sbjct: 73  QLQHQRLVRLYAVVTQEPIYIIT-EYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGM 131
Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA 138
           A++     R  + R+ +  NIL ++    K  DF L+  I + E           + ++A
Sbjct: 132 AFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIK-WTA 187
Query: 139 PEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRF 197
           PE I+      KS+V+SFG  L E++  GRI                            +
Sbjct: 188 PEAINYGTFTIKSDVWSFGILLTEIVTHGRIP---------------------------Y 220
Query: 198 TGIPAPIIVQDIP----CIEKEQQLHASAQLTLECVNNSPEDRPT 238
            G+  P ++Q++      +  +       QL   C    PEDRPT
Sbjct: 221 PGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPT 265

>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma Viral Oncogene Homologue (V-Fes) In Complex With Staurosporine And A Consensus Peptide Length = 377

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 2/140 (1%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIF--GAPLPRLKIASDIVNSLAYLH 82
           Q SH +I++ IG C Q     +V + V+ G     +   GA L    +   + ++ A + 
Sbjct: 168 QYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGME 227
Query: 83  FGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYI 142
           +   +  + R+   +N L  E+NV K  DF +S    +G    +         ++APE +
Sbjct: 228 YLESKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVXAASGGLRQVPVKWTAPEAL 287
Query: 143 SICVLNEKSNVFSFGAFLFE 162
           +    + +S+V+SFG  L+E
Sbjct: 288 NYGRYSSESDVWSFGILLWE 307

>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule W259 Length = 287

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 90/225 (40%), Gaps = 43/225 (19%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKI------ASDIVNSL 78
           Q+ H  +++      Q PI I+  + +E G+L D +      +L I      A+ I   +
Sbjct: 72  QLQHQRLVRLYAVVTQEPIYIIT-EYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGM 130
Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA 138
           A++     R  + R+ +  NIL ++    K  DF L+  I + E           + ++A
Sbjct: 131 AFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIK-WTA 186
Query: 139 PEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRF 197
           PE I+      KS+V+SFG  L E++  GRI                            +
Sbjct: 187 PEAINYGTFTIKSDVWSFGILLTEIVTHGRIP---------------------------Y 219
Query: 198 TGIPAPIIVQDIP----CIEKEQQLHASAQLTLECVNNSPEDRPT 238
            G+  P ++Q++      +  +       QL   C    PEDRPT
Sbjct: 220 PGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPT 264

>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase Domain Of Human Lck, (Auto-Phosphorylated On Tyr394) Length = 285

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 90/225 (40%), Gaps = 43/225 (19%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKI------ASDIVNSL 78
           Q+ H  +++      Q PI I+  + +E G+L D +      +L I      A+ I   +
Sbjct: 70  QLQHQRLVRLYAVVTQEPIYIIT-EYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGM 128
Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA 138
           A++     R  + R+ +  NIL ++    K  DF L+  I + E           + ++A
Sbjct: 129 AFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIK-WTA 184
Query: 139 PEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRF 197
           PE I+      KS+V+SFG  L E++  GRI                            +
Sbjct: 185 PEAINYGTFTIKSDVWSFGILLTEIVTHGRIP---------------------------Y 217
Query: 198 TGIPAPIIVQDIP----CIEKEQQLHASAQLTLECVNNSPEDRPT 238
            G+  P ++Q++      +  +       QL   C    PEDRPT
Sbjct: 218 PGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPT 262

>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082 Length = 270

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 72/145 (49%), Gaps = 10/145 (6%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA------PLPRLKIASDIVNSL 78
           ++ H ++++ +G C + P   ++ + + YG L D +          +  L +A+ I +++
Sbjct: 65  EIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAM 124
Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA 138
            YL     +  + R+   +N L  E ++ K  DF LS  +  G+T+           ++A
Sbjct: 125 EYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLS-RLMTGDTYTAHAGAKFPIKWTA 180
Query: 139 PEYISICVLNEKSNVFSFGAFLFEL 163
           PE ++    + KS+V++FG  L+E+
Sbjct: 181 PESLAYNKFSIKSDVWAFGVLLWEI 205

>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970 Length = 277

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 72/145 (49%), Gaps = 10/145 (6%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA------PLPRLKIASDIVNSL 78
           ++ H ++++ +G C + P   ++ + + YG L D +          +  L +A+ I +++
Sbjct: 69  EIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAM 128
Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA 138
            YL     +  + R+   +N L  E ++ K  DF LS  +  G+T+           ++A
Sbjct: 129 EYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLS-RLMTGDTYTAHAGAKFPIKWTA 184
Query: 139 PEYISICVLNEKSNVFSFGAFLFEL 163
           PE ++    + KS+V++FG  L+E+
Sbjct: 185 PESLAYNKFSIKSDVWAFGVLLWEI 209

>pdb|2QLU|A Chain A, Crystal Structure Of Activin Receptor Type Ii Kinase Domain From Human Length = 314

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 13/109 (11%)
Query: 70  IASDIVNSLAYLHFGFP-------RP-IVLRNFKTQNILFNEENVAKWFDFLLSISIPEG 121
           +A  +   L+YLH   P       +P I  R+FK++N+L   +  A   DF L++    G
Sbjct: 117 VAETMSRGLSYLHEDVPWCRGEGHKPSIAHRDFKSKNVLLKSDLTAVLADFGLAVRFEPG 176
Query: 122 ETHITTDRVIGTRGYSAPEYISICVLNEKS-----NVFSFGAFLFELLA 165
           +    T   +GTR Y APE +   +  ++      ++++ G  L+EL++
Sbjct: 177 KPPGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELVS 225

>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571, Glivec) Length = 273

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 72/145 (49%), Gaps = 10/145 (6%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA------PLPRLKIASDIVNSL 78
           ++ H ++++ +G C + P   ++ + + YG L D +          +  L +A+ I +++
Sbjct: 65  EIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAM 124
Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA 138
            YL     +  + R+   +N L  E ++ K  DF LS  +  G+T+           ++A
Sbjct: 125 EYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLS-RLMTGDTYTAHAGAKFPIKWTA 180
Query: 139 PEYISICVLNEKSNVFSFGAFLFEL 163
           PE ++    + KS+V++FG  L+E+
Sbjct: 181 PESLAYNKFSIKSDVWAFGVLLWEI 205

>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b Length = 277

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 91/225 (40%), Gaps = 43/225 (19%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKI------ASDIVNSL 78
           Q+ H  +++      Q PI I+  + +E G+L D +      +L I      A+ I   +
Sbjct: 70  QLQHQRLVRLYAVVTQEPIYIIT-EYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGM 128
Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA 138
           A++     R  + R+ +  NIL ++    K  DF L+  I + E +   +       ++A
Sbjct: 129 AFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE-YTAREGAKFPIKWTA 184
Query: 139 PEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRF 197
           PE I+      KS+V+SFG  L E++  GRI                            +
Sbjct: 185 PEAINYGTFTIKSDVWSFGILLTEIVTHGRIP---------------------------Y 217
Query: 198 TGIPAPIIVQDIP----CIEKEQQLHASAQLTLECVNNSPEDRPT 238
            G+  P ++Q++      +  +       QL   C    PEDRPT
Sbjct: 218 PGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPT 262

>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck Length = 277

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 91/225 (40%), Gaps = 43/225 (19%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKI------ASDIVNSL 78
           Q+ H  +++      Q PI I+  + +E G+L D +      +L I      A+ I   +
Sbjct: 69  QLQHQRLVRLYAVVTQEPIYIIT-EYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGM 127
Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA 138
           A++     R  + R+ +  NIL ++    K  DF L+  I + E +   +       ++A
Sbjct: 128 AFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE-YTAREGAKFPIKWTA 183
Query: 139 PEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRF 197
           PE I+      KS+V+SFG  L E++  GRI                            +
Sbjct: 184 PEAINYGTFTIKSDVWSFGILLTEIVTHGRIP---------------------------Y 216
Query: 198 TGIPAPIIVQDIP----CIEKEQQLHASAQLTLECVNNSPEDRPT 238
            G+  P ++Q++      +  +       QL   C    PEDRPT
Sbjct: 217 PGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPT 261

>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase Catalytic Domain Complexed With Type Ii Inhibitor Length = 287

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 72/145 (49%), Gaps = 10/145 (6%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA------PLPRLKIASDIVNSL 78
           ++ H ++++ +G C + P   ++ + + YG L D +          +  L +A+ I +++
Sbjct: 67  EIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAM 126
Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA 138
            YL     +  + R+   +N L  E ++ K  DF LS  +  G+T+           ++A
Sbjct: 127 EYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLS-RLMTGDTYTAHAGAKFPIKWTA 182
Query: 139 PEYISICVLNEKSNVFSFGAFLFEL 163
           PE ++    + KS+V++FG  L+E+
Sbjct: 183 PESLAYNKFSIKSDVWAFGVLLWEI 207

>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable, Small-Molecule C- Abl Kinase Activator That Binds To The Myristoyl Binding Site Length = 298

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 72/145 (49%), Gaps = 10/145 (6%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA------PLPRLKIASDIVNSL 78
           ++ H ++++ +G C + P   ++ + + YG L D +          +  L +A+ I +++
Sbjct: 78  EIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAM 137
Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA 138
            YL     +  + R+   +N L  E ++ K  DF LS  +  G+T+           ++A
Sbjct: 138 EYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLS-RLMTGDTYTAHAGAKFPIKWTA 193
Query: 139 PEYISICVLNEKSNVFSFGAFLFEL 163
           PE ++    + KS+V++FG  L+E+
Sbjct: 194 PESLAYNKFSIKSDVWAFGVLLWEI 218

>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In Complex With Dcc- 2036 Length = 277

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 72/145 (49%), Gaps = 10/145 (6%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA------PLPRLKIASDIVNSL 78
           ++ H ++++ +G C + P   ++ + + YG L D +          +  L +A+ I +++
Sbjct: 70  EIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAM 129
Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA 138
            YL     +  + R+   +N L  E ++ K  DF LS  +  G+T+           ++A
Sbjct: 130 EYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLS-RLMTGDTYTAHAGAKFPIKWTA 185
Query: 139 PEYISICVLNEKSNVFSFGAFLFEL 163
           PE ++    + KS+V++FG  L+E+
Sbjct: 186 PESLAYNKFSIKSDVWAFGVLLWEI 210

>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 72/145 (49%), Gaps = 10/145 (6%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA------PLPRLKIASDIVNSL 78
           ++ H ++++ +G C + P   ++ + + YG L D +          +  L +A+ I +++
Sbjct: 67  EIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAM 126
Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA 138
            YL     +  + R+   +N L  E ++ K  DF LS  +  G+T+           ++A
Sbjct: 127 EYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLS-RLMTGDTYTAHAGAKFPIKWTA 182
Query: 139 PEYISICVLNEKSNVFSFGAFLFEL 163
           PE ++    + KS+V++FG  L+E+
Sbjct: 183 PESLAYNKFSIKSDVWAFGVLLWEI 207

>pdb|3Q4T|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a) Kinase Domain In Complex With Dorsomorphin Length = 322

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 19/157 (12%)
Query: 26  MSHNHILKRIGCCLQ-TPIPI---LVFQSVEYGTLRDCIFGAPLPRLK---IASDIVNSL 78
           M H +IL+ IG   + T + +   L+    E G+L D +    +   +   IA  +   L
Sbjct: 75  MKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKANVVSWNELCHIAETMARGL 134
Query: 79  AYLHFGFP------RPIVL-RNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           AYLH   P      +P +  R+ K++N+L      A   DF L++    G++   T   +
Sbjct: 135 AYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDTHGQV 194
Query: 132 GTRGYSAPEYISICVLNEKS-----NVFSFGAFLFEL 163
           GTR Y APE +   +  ++      ++++ G  L+EL
Sbjct: 195 GTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWEL 231

>pdb|2PL0|A Chain A, Lck Bound To Imatinib Length = 289

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 91/225 (40%), Gaps = 43/225 (19%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKI------ASDIVNSL 78
           Q+ H  +++      Q PI I+  + +E G+L D +      +L I      A+ I   +
Sbjct: 74  QLQHQRLVRLYAVVTQEPIYIIT-EYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGM 132
Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA 138
           A++     R  + R+ +  NIL ++    K  DF L+  I + E +   +       ++A
Sbjct: 133 AFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE-YTAREGAKFPIKWTA 188
Query: 139 PEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRF 197
           PE I+      KS+V+SFG  L E++  GRI                            +
Sbjct: 189 PEAINYGTFTIKSDVWSFGILLTEIVTHGRIP---------------------------Y 221
Query: 198 TGIPAPIIVQDIP----CIEKEQQLHASAQLTLECVNNSPEDRPT 238
            G+  P ++Q++      +  +       QL   C    PEDRPT
Sbjct: 222 PGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPEDRPT 266

>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex With Inno-406 Length = 293

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 72/145 (49%), Gaps = 10/145 (6%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA------PLPRLKIASDIVNSL 78
           ++ H ++++ +G C + P   ++ + + YG L D +          +  L +A+ I +++
Sbjct: 70  EIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAM 129
Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA 138
            YL     +  + R+   +N L  E ++ K  DF LS  +  G+T+           ++A
Sbjct: 130 EYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLS-RLMTGDTYTAHAGAKFPIKWTA 185
Query: 139 PEYISICVLNEKSNVFSFGAFLFEL 163
           PE ++    + KS+V++FG  L+E+
Sbjct: 186 PESLAYNKFSIKSDVWAFGVLLWEI 210

>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679 Length = 279

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           +++ N+L+Y H    + ++ R+ K +N+L       K  DF  S+  P        D + 
Sbjct: 116 TELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRR----DTLC 168
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           GT  Y  PE I   + +EK +++S G   +E L G+
Sbjct: 169 GTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 204

>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of Pyrazolopyridine- Sulfonamides As Potent Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I) Length = 271

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           +++ N+L+Y H    + ++ R+ K +N+L       K  DF  S+  P        D + 
Sbjct: 118 TELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRR----DDLC 170
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           GT  Y  PE I   + +EK +++S G   +E L G+
Sbjct: 171 GTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 206

>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 72/145 (49%), Gaps = 10/145 (6%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFG------APLPRLKIASDIVNSL 78
           ++ H ++++ +G C + P   ++ + + YG L D +        + +  L +A+ I +++
Sbjct: 63  EIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAM 122
Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA 138
            YL     +  + R+   +N L  E ++ K  DF LS  +  G+T            ++A
Sbjct: 123 EYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLS-RLMTGDTXTAHAGAKFPIKWTA 178
Query: 139 PEYISICVLNEKSNVFSFGAFLFEL 163
           PE ++    + KS+V++FG  L+E+
Sbjct: 179 PESLAYNKFSIKSDVWAFGVLLWEI 203

>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene Homologue (V- Fes) Length = 377

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 2/140 (1%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIF--GAPLPRLKIASDIVNSLAYLH 82
           Q SH +I++ IG C Q     +V + V+ G     +   GA L    +   + ++ A + 
Sbjct: 168 QYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGME 227
Query: 83  FGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYI 142
           +   +  + R+   +N L  E+NV K  DF +S    +G    +         ++APE +
Sbjct: 228 YLESKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYAASGGLRQVPVKWTAPEAL 287
Query: 143 SICVLNEKSNVFSFGAFLFE 162
           +    + +S+V+SFG  L+E
Sbjct: 288 NYGRYSSESDVWSFGILLWE 307

>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 46  LVFQSVEYGTLRDCIFGAPLPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEEN 105
           +V + +  G+L D +    +   +IA+     L  L F     ++ RN K+ NIL   + 
Sbjct: 95  VVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRNIKSDNILLGMDG 154
Query: 106 VAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA 165
             K  DF     I   ++  +T  ++GT  + APE ++      K +++S G    E++ 
Sbjct: 155 SVKLTDFGFCAQITPEQSKRST--MVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIE 212
Query: 166 G 166
           G
Sbjct: 213 G 213

>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With The Inhibitor Pha-739358 Length = 286

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 71/145 (48%), Gaps = 10/145 (6%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA------PLPRLKIASDIVNSL 78
           ++ H ++++ +G C + P   ++ + + YG L D +          +  L +A+ I +++
Sbjct: 66  EIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAM 125
Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA 138
            YL     +  + R+   +N L  E ++ K  DF LS  +  G+T            ++A
Sbjct: 126 EYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLS-RLMTGDTXTAHAGAKFPIKWTA 181
Query: 139 PEYISICVLNEKSNVFSFGAFLFEL 163
           PE ++    + KS+V++FG  L+E+
Sbjct: 182 PESLAYNKFSIKSDVWAFGVLLWEI 206

>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632 Length = 306

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           +++ N+L+Y H    + ++ R+ K +N+L       K  DF  S+  P        D + 
Sbjct: 141 TELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRR----DDLC 193
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           GT  Y  PE I   + +EK +++S G   +E L G+
Sbjct: 194 GTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 229

>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 72/145 (49%), Gaps = 10/145 (6%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFG------APLPRLKIASDIVNSL 78
           ++ H ++++ +G C + P   ++ + + YG L D +        + +  L +A+ I +++
Sbjct: 63  EIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAM 122
Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA 138
            YL     +  + R+   +N L  E ++ K  DF LS  +  G+T            ++A
Sbjct: 123 EYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLS-RLMTGDTFTAHAGAKFPIKWTA 178
Query: 139 PEYISICVLNEKSNVFSFGAFLFEL 163
           PE ++    + KS+V++FG  L+E+
Sbjct: 179 PESLAYNKFSIKSDVWAFGVLLWEI 203

>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An Aminoisoquinoline Inhibitor Length = 300

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 68  LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITT 127
           + IA      + YLH    + I+ R+ K+ NI  +E+   K  DF L+            
Sbjct: 127 IDIARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQF 183
Query: 128 DRVIGTRGYSAPEYISICVLNE---KSNVFSFGAFLFELLAGRI 168
           +++ G+  + APE I +   N    +S+V++FG  L+EL+ G++
Sbjct: 184 EQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQL 227

>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006 Length = 276

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 68  LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITT 127
           + IA      + YLH    + I+ R+ K+ NI  +E+   K  DF L+            
Sbjct: 107 IDIARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQF 163
Query: 128 DRVIGTRGYSAPEYISICVLNE---KSNVFSFGAFLFELLAGRI 168
           +++ G+  + APE I +   N    +S+V++FG  L+EL+ G++
Sbjct: 164 EQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQL 207

>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii Dihydroquinazoline Inhibitor Length = 307

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 68  LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITT 127
           + IA      + YLH    + I+ R+ K+ NI  +E+   K  DF L+            
Sbjct: 135 IDIARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQF 191
Query: 128 DRVIGTRGYSAPEYISICVLNE---KSNVFSFGAFLFELLAGRI 168
           +++ G+  + APE I +   N    +S+V++FG  L+EL+ G++
Sbjct: 192 EQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQL 235

>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With Compound 7 Length = 298

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 19/158 (12%)
Query: 20  ITYAAQMSHNHILKRIGCCLQTPIP--ILVFQSVEYGTLRDCIFGAP-----LPRLKIAS 72
           I     + H++I+K  G C         L+ + + YG+LR+ +         +  L+  S
Sbjct: 65  IEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEFLPYGSLREYLQKHKERIDHIKLLQYTS 124
Query: 73  DIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIG 132
            I   + YL  G  R  + R+  T+NIL   EN  K  DF L+  +P+ +        + 
Sbjct: 125 QICKGMEYL--GTKR-YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXK----VK 177
Query: 133 TRGYS-----APEYISICVLNEKSNVFSFGAFLFELLA 165
             G S     APE ++    +  S+V+SFG  L+EL  
Sbjct: 178 EPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFT 215

>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N- Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 Length = 325

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
Query: 65  LPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH 124
           L  L +A D ++SL          I+ R+ K +NIL +EE   K  DF LS    + E  
Sbjct: 132 LAELALALDHLHSLG---------IIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKK 182
Query: 125 ITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRI 168
             +    GT  Y APE ++     + ++ +SFG  +FE+L G +
Sbjct: 183 AYS--FCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTL 224

>pdb|3IW4|A Chain A, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071 Length = 360

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 71  ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDF-LLSISIPEGETHITTDR 129
           A++I   L +LH    R I+ R+ K  N++ + E   K  DF +    + +G   +TT  
Sbjct: 126 AAEISIGLFFLH---KRGIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMMDG---VTTRE 179
Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
             GT  Y APE I+     +  + +++G  L+E+LAG+
Sbjct: 180 FCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQ 217

>pdb|3BEA|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A Pyrimidinopyridone Inhibitor Length = 333

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 74/180 (41%), Gaps = 17/180 (9%)
Query: 1   MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTL---- 56
           +K   H   +    S +  +++  Q  H +I+  +G C      +++ +   YG L    
Sbjct: 84  LKSTAHADEKEALMSELKIMSHLGQ--HENIVNLLGACTHGGPVLVITEYCCYGDLLNFL 141
Query: 57  -RDCIFGAPLPRLKIASDIVNSLAYLHFG----------FPRPIVLRNFKTQNILFNEEN 105
            R        P   IA+  +++   LHF             +  + R+   +N+L    +
Sbjct: 142 RRKSRVLETDPAFAIANSTLSTRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGH 201
Query: 106 VAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA 165
           VAK  DF L+  I     +I          + APE I  CV   +S+V+S+G  L+E+ +
Sbjct: 202 VAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFS 261

>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor Discovered Through Site-Directed Dynamic Tethering Length = 272

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 7/95 (7%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           +++ N+L+Y H    + ++ R+ K +N+L       K  DF  S+  P        D + 
Sbjct: 119 TELANALSYCH---SKRVIHRDIKPENLLLGSNGELKIADFGWSVHAPSSRR----DTLC 171
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
           GT  Y  PE I   + +EK +++S G   +E L G
Sbjct: 172 GTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVG 206

>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex With Flavonoid Glycoside Sl0101 Length = 304

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
Query: 65  LPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH 124
           L  L +A D ++SL          I+ R+ K +NIL +EE   K  DF LS    + E  
Sbjct: 132 LAELALALDHLHSLG---------IIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKK 182
Query: 125 ITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRI 168
             +    GT  Y APE ++     + ++ +SFG  +FE+L G +
Sbjct: 183 AYS--FCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTL 224

>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To Activated Abl Kinase Domain Length = 278

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 71/145 (48%), Gaps = 10/145 (6%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA------PLPRLKIASDIVNSL 78
           ++ H ++++ +G C + P   ++ + + YG L D +          +  L +A+ I +++
Sbjct: 70  EIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAM 129
Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA 138
            YL     +  + R+   +N L  E ++ K  DF LS  +  G+T            ++A
Sbjct: 130 EYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLS-RLMTGDTXTAHAGAKFPIKWTA 185
Query: 139 PEYISICVLNEKSNVFSFGAFLFEL 163
           PE ++    + KS+V++FG  L+E+
Sbjct: 186 PESLAYNKFSIKSDVWAFGVLLWEI 210

>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin Length = 305

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
Query: 65  LPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH 124
           L  L +A D ++SL          I+ R+ K +NIL +EE   K  DF LS    + E  
Sbjct: 133 LAELALALDHLHSLG---------IIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKK 183
Query: 125 ITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRI 168
             +    GT  Y APE ++     + ++ +SFG  +FE+L G +
Sbjct: 184 AYS--FCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTL 225

>pdb|3LCD|A Chain A, Inhibitor Bound To A Dfg-In Structure Of The Kinase Domain Of Csf-1r Length = 329

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 76/179 (42%), Gaps = 19/179 (10%)
Query: 1   MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI 60
           +K   H   +    S +  +++  Q  H +I+  +G C      +++ +   YG L + +
Sbjct: 84  LKSTAHADEKEALMSELKIMSHLGQ--HENIVNLLGACTHGGPVLVITEYCCYGDLLNFL 141
Query: 61  F-----------GAPLPR---LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENV 106
                       G PL     L  +S +   +A+L     +  + R+   +N+L    +V
Sbjct: 142 RRKAEADLDKEDGRPLELRDLLHFSSQVAQGMAFLA---SKNCIHRDVAARNVLLTNGHV 198
Query: 107 AKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA 165
           AK  DF L+  I     +I          + APE I  CV   +S+V+S+G  L+E+ +
Sbjct: 199 AKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFS 257

>pdb|2OGV|A Chain A, Crystal Structure Of The Autoinhibited Human C-Fms Kinase Domain Length = 317

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 76/179 (42%), Gaps = 19/179 (10%)
Query: 1   MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI 60
           +K   H   +    S +  +++  Q  H +I+  +G C      +++ +   YG L + +
Sbjct: 76  LKSTAHADEKEALMSELKIMSHLGQ--HENIVNLLGACTHGGPVLVITEYCCYGDLLNFL 133
Query: 61  F-----------GAPLPR---LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENV 106
                       G PL     L  +S +   +A+L     +  + R+   +N+L    +V
Sbjct: 134 RRKAEADLDKEDGRPLELRDLLHFSSQVAQGMAFLA---SKNCIHRDVAARNVLLTNGHV 190
Query: 107 AKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA 165
           AK  DF L+  I     +I          + APE I  CV   +S+V+S+G  L+E+ +
Sbjct: 191 AKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFS 249

>pdb|2I1M|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An Arylamide Inhibitor Length = 333

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 73/180 (40%), Gaps = 17/180 (9%)
Query: 1   MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTL---- 56
           +K   H   +    S +  +++  Q  H +I+  +G C      +++ +   YG L    
Sbjct: 84  LKSTAHADEKEALMSELKIMSHLGQ--HENIVNLLGACTHGGPVLVITEYCCYGDLLNFL 141
Query: 57  -RDCIFGAPLPRLKIASDIVNSLAYLHFG----------FPRPIVLRNFKTQNILFNEEN 105
            R        P   IA+   ++   LHF             +  + R+   +N+L    +
Sbjct: 142 RRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGH 201
Query: 106 VAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA 165
           VAK  DF L+  I     +I          + APE I  CV   +S+V+S+G  L+E+ +
Sbjct: 202 VAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFS 261

>pdb|1S9I|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp Length = 354

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTD 128
           K++  ++  LAYL       I+ R+ K  NIL N     K  DF +S  + +       +
Sbjct: 118 KVSIAVLRGLAYLRE--KHQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS----MAN 171
Query: 129 RVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHI 170
             +GTR Y APE +     + +S+++S G  L EL  GR  I
Sbjct: 172 SFVGTRSYMAPERLQGTHYSVQSDIWSMGLSLVELAVGRYPI 213

>pdb|3KEX|A Chain A, Crystal Structure Of The Catalytically Inactive Kinase Domain Of The Human Epidermal Growth Factor Receptor 3 (Her3) Length = 325

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 72/160 (45%), Gaps = 9/160 (5%)
Query: 10  RHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIF---GAPLP 66
           R ++ +  +++     + H HI++ +G C  + +  LV Q +  G+L D +    GA  P
Sbjct: 56  RQSFQAVTDHMLAIGSLDHAHIVRLLGLCPGSSLQ-LVTQYLPLGSLLDHVRQHRGALGP 114
Query: 67  RLKI--ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH 124
           +L +     I   + YL       +V RN   +N+L    +  +  DF ++  +P  +  
Sbjct: 115 QLLLNWGVQIAKGMYYLE---EHGMVHRNLAARNVLLKSPSQVQVADFGVADLLPPDDKQ 171
Query: 125 ITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELL 164
           +          + A E I       +S+V+S+G  ++EL+
Sbjct: 172 LLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELM 211

>pdb|3LMG|A Chain A, Crystal Structure Of The Erbb3 Kinase Domain In Complex With Amp-Pnp Length = 344

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 72/160 (45%), Gaps = 9/160 (5%)
Query: 10  RHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIF---GAPLP 66
           R ++ +  +++     + H HI++ +G C  + +  LV Q +  G+L D +    GA  P
Sbjct: 74  RQSFQAVTDHMLAIGSLDHAHIVRLLGLCPGSSLQ-LVTQYLPLGSLLDHVRQHRGALGP 132
Query: 67  RLKI--ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH 124
           +L +     I   + YL       +V RN   +N+L    +  +  DF ++  +P  +  
Sbjct: 133 QLLLNWGVQIAKGMYYLE---EHGMVHRNLAARNVLLKSPSQVQVADFGVADLLPPDDKQ 189
Query: 125 ITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELL 164
           +          + A E I       +S+V+S+G  ++EL+
Sbjct: 190 LLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELM 229

>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 284

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 68  LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITT 127
           + IA      + YLH    + I+ R+ K+ NI  +E+   K  DF L+            
Sbjct: 112 IDIARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQF 168
Query: 128 DRVIGTRGYSAPEYISICVLNE---KSNVFSFGAFLFELLAGRI 168
           +++ G+  + APE I +   N    +S+V++FG  L+EL+ G++
Sbjct: 169 EQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQL 212

>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3- Methoxybenzyl)-7-Azaindole Length = 302

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 17/154 (11%)
Query: 27  SHNHILKRIGCCLQTPIPILVFQSVEYGTLRD------------CIFGAPLPRLKIASDI 74
            H +I+  +G C Q     ++ +    G LR+            C   +  P  +++S  
Sbjct: 77  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYCYNPSHNPEEQLSSKD 136
Query: 75  VNSLAY-----LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR 129
           + S AY     + +   +  + R+   +N+L  E+NV K  DF L+  I   + +  T  
Sbjct: 137 LVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTN 196
Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL 163
                 + APE +   +   +S+V+SFG  L+E+
Sbjct: 197 GRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEI 230

>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase Length = 307

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 68  LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITT 127
           + IA      + YLH    + I+ R+ K+ NI  +E+   K  DF L+            
Sbjct: 135 IDIARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQF 191
Query: 128 DRVIGTRGYSAPEYISICVLNE---KSNVFSFGAFLFELLAGRI 168
           +++ G+  + APE I +   N    +S+V++FG  L+EL+ G++
Sbjct: 192 EQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQL 235

>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine Inhibitor Length = 306

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 68  LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITT 127
           + IA      + YLH    + I+ R+ K+ NI  +E+   K  DF L+            
Sbjct: 134 IDIARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQF 190
Query: 128 DRVIGTRGYSAPEYISICVLNE---KSNVFSFGAFLFELLAGRI 168
           +++ G+  + APE I +   N    +S+V++FG  L+EL+ G++
Sbjct: 191 EQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQL 234

>pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a Resolution. Length = 352

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 71  ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRV 130
           A++I+  L +LH    + IV R+ K  NIL +++   K  DF +      G+    T+  
Sbjct: 125 AAEIILGLQFLH---SKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDA--KTNEF 179
Query: 131 IGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
            GT  Y APE +     N   + +SFG  L+E+L G+
Sbjct: 180 CGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQ 216

>pdb|2J0J|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase Containing The Ferm And Kinase Domains Length = 656

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 10/145 (6%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI----FGAPLPRLKI-ASDIVNSLA 79
           Q  H HI+K IG   + P+ I + +    G LR  +    F   L  L + A  +  +LA
Sbjct: 447 QFDHPHIVKLIGVITENPVWI-IMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALA 505
Query: 80  YLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAP 139
           YL     +  V R+   +N+L +  +  K  DF LS  + E  T+    +      + AP
Sbjct: 506 YLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYM-EDSTYYKASKGKLPIKWMAP 561
Query: 140 EYISICVLNEKSNVFSFGAFLFELL 164
           E I+       S+V+ FG  ++E+L
Sbjct: 562 ESINFRRFTSASDVWMFGVCMWEIL 586

>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A Tetrahydronaphthalene Inhibitor Length = 282

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 68  LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITT 127
           + IA      + YLH    + I+ R+ K+ NI  +E+   K  DF L+            
Sbjct: 109 IDIARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQF 165
Query: 128 DRVIGTRGYSAPEYISICVLNE---KSNVFSFGAFLFELLAGRI 168
           +++ G+  + APE I +   N    +S+V++FG  L+EL+ G++
Sbjct: 166 EQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQL 209

>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885 Length = 281

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 68  LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITT 127
           + IA      + YLH    + I+ R+ K+ NI  +E+   K  DF L+            
Sbjct: 112 IDIARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQF 168
Query: 128 DRVIGTRGYSAPEYISICVLNE---KSNVFSFGAFLFELLAGRI 168
           +++ G+  + APE I +   N    +S+V++FG  L+EL+ G++
Sbjct: 169 EQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQL 212

>pdb|4H58|A Chain A, Braf In Complex With Compound 3 Length = 275

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 68  LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITT 127
           + IA      + YLH    + I+ R+ K+ NI  +E+   K  DF L+            
Sbjct: 107 IDIARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQF 163
Query: 128 DRVIGTRGYSAPEYISICVLNE---KSNVFSFGAFLFELLAGRI 168
           +++ G+  + APE I +   N    +S+V++FG  L+EL+ G++
Sbjct: 164 EQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQL 207

>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006 Length = 276

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 68  LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITT 127
           + IA      + YLH    + I+ R+ K+ NI  +E+   K  DF L+            
Sbjct: 107 IDIARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQF 163
Query: 128 DRVIGTRGYSAPEYISICVLNE---KSNVFSFGAFLFELLAGRI 168
           +++ G+  + APE I +   N    +S+V++FG  L+EL+ G++
Sbjct: 164 EQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQL 207

>pdb|3EKK|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor Length = 307

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/163 (20%), Positives = 75/163 (46%), Gaps = 17/163 (10%)
Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIF----------GAPLP 66
           +N  +     + +H+++ +G   +    ++V + + +G L+  +           G P P
Sbjct: 69  LNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPP 128
Query: 67  RLK----IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGE 122
            L+    +A++I + +AYL+    +  V RN   +N +   +   K  DF ++  I E +
Sbjct: 129 TLQEMIQMAAEIADGMAYLN---AKKFVHRNLAARNCMVAHDFTVKIGDFGMTRDIYETD 185
Query: 123 THITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA 165
            +    + +    + APE +   V    S+++SFG  L+E+ +
Sbjct: 186 YYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITS 228

>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein Kinase Length = 333

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 94/228 (41%), Gaps = 39/228 (17%)
Query: 24  AQMSHNHILKRIGCCLQTPIPILVFQSVEYGTL------RDCIFGAPLPRLKIASDIVNS 77
            Q SH++I++  G   +    +++ + +E G L      +D  F   L  + +   I   
Sbjct: 101 GQFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSV-LQLVGMLRGIAAG 159
Query: 78  LAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISI---PEGETHITTDRVIGTR 134
           + YL        V R+   +NIL N   V K  DF LS  +   PE  T+ T+   I  R
Sbjct: 160 MKYLA---NMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEA-TYTTSGGKIPIR 215
Query: 135 GYSAPEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLE 193
            ++APE IS       S+V+SFG  ++E++  G    W+L    H+     N+  +    
Sbjct: 216 -WTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWEL--SNHEVMKAINDGFR---- 268
Query: 194 DKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD 241
                 +P P+   D P         A  QL ++C       RP   D
Sbjct: 269 ------LPTPM---DCPS--------AIYQLMMQCWQQERARRPKFAD 299

>pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 17/154 (11%)
Query: 27  SHNHILKRIGCCLQTPIPILVFQSVEYGTLRD------------CIFGAPLPRLKIASDI 74
            H +I+  +G C Q     ++ +    G LR+            C   +  P  +++S  
Sbjct: 92  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYCYNPSHNPEEQLSSKD 151
Query: 75  VNSLAY-----LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR 129
           + S AY     + +   +  + R+   +N+L  E+NV K  DF L+  I   + +  T  
Sbjct: 152 LVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTN 211
Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL 163
                 + APE +   +   +S+V+SFG  L+E+
Sbjct: 212 GRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEI 245

>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 96/235 (40%), Gaps = 47/235 (20%)
Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTL------RDCIFG-----APL 65
           ++  +   Q  H +I++  G   +  + ++V + +E G+L       D  F        L
Sbjct: 98  LSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQFTIMQLVGML 157
Query: 66  PRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEG--ET 123
             +      ++ L Y+H         R+   +N+L +   V K  DF LS  + +     
Sbjct: 158 RGVGAGMRYLSDLGYVH---------RDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAA 208
Query: 124 HITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGC 182
           + TT   I  R ++APE I+    +  S+V+SFG  ++E+LA G    W++         
Sbjct: 209 YTTTGGKIPIR-WTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTN------- 260
Query: 183 FFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRP 237
              + + +  E  R   +PAP+              HA  QL L+C +     RP
Sbjct: 261 --RDVISSVEEGYR---LPAPMGCP-----------HALHQLMLDCWHKDRAQRP 299

>pdb|1P14|A Chain A, Crystal Structure Of A Catalytic-Loop Mutant Of The Insulin Receptor Tyrosine Kinase Length = 306

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/163 (20%), Positives = 75/163 (46%), Gaps = 17/163 (10%)
Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIF----------GAPLP 66
           +N  +     + +H+++ +G   +    ++V + + +G L+  +           G P P
Sbjct: 68  LNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPP 127
Query: 67  RLK----IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGE 122
            L+    +A++I + +AYL+    +  V RN   +N +   +   K  DF ++  I E +
Sbjct: 128 TLQEMIQMAAEIADGMAYLN---AKKFVHRNLAARNCMVAHDFTVKIGDFGMTRDIYETD 184
Query: 123 THITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA 165
            +    + +    + APE +   V    S+++SFG  L+E+ +
Sbjct: 185 YYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITS 227

>pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor 1 Length = 317

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 17/154 (11%)
Query: 27  SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRL------------KIASDI 74
            H +I+  +G C Q     ++ +    G LR+ +     P L            +++S  
Sbjct: 92  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQAREPPGLEYSYNPSHNPEEQLSSKD 151
Query: 75  VNSLAY-----LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR 129
           + S AY     + +   +  + R+   +N+L  E+NV K  DF L+  I   + +  T  
Sbjct: 152 LVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTN 211
Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL 163
                 + APE +   +   +S+V+SFG  L+E+
Sbjct: 212 GRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEI 245

>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase Length = 314

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 67/156 (42%), Gaps = 10/156 (6%)
Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIF--GAPLPRLKIAS-- 72
           I  I+   Q    H++K  G   +     +V +    G++ D I      L   +IA+  
Sbjct: 72  IKEISIMQQCDSPHVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKTLTEDEIATIL 131
Query: 73  -DIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
              +  L YLHF      + R+ K  NIL N E  AK  DF ++  +   +     + VI
Sbjct: 132 QSTLKGLEYLHFMRK---IHRDIKAGNILLNTEGHAKLADFGVAGQL--TDXMAKRNXVI 186
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           GT  + APE I     N  ++++S G    E+  G+
Sbjct: 187 GTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGK 222

>pdb|2JKK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Bis- Anilino Pyrimidine Inhibitor Length = 276

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 10/145 (6%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI----FGAPLPRLKI-ASDIVNSLA 79
           Q  H HI+K IG   + P+ I + +    G LR  +    F   L  L + A  +  +LA
Sbjct: 67  QFDHPHIVKLIGVITENPVWI-IMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALA 125
Query: 80  YLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAP 139
           YL     +  V R+   +N+L +  +  K  DF LS  + E  T+    +      + AP
Sbjct: 126 YLE---SKRFVHRDIAARNVLVSATDCVKLGDFGLSRYM-EDSTYYKASKGKLPIKWMAP 181
Query: 140 EYISICVLNEKSNVFSFGAFLFELL 164
           E I+       S+V+ FG  ++E+L
Sbjct: 182 ESINFRRFTSASDVWMFGVCMWEIL 206

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 71  ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDF-LLSISIPEGETHITTDR 129
           A++I   L +L     + I+ R+ K  N++ + E   K  DF +   +I +G   +TT  
Sbjct: 448 AAEIAIGLFFLQ---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDG---VTTKX 501
Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
             GT  Y APE I+     +  + ++FG  L+E+LAG+
Sbjct: 502 FCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQ 539

>pdb|2J0K|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase Containing The Ferm And Kinase Domains. Length = 656

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 10/145 (6%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI----FGAPLPRLKI-ASDIVNSLA 79
           Q  H HI+K IG   + P+ I + +    G LR  +    F   L  L + A  +  +LA
Sbjct: 447 QFDHPHIVKLIGVITENPVWI-IMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALA 505
Query: 80  YLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAP 139
           YL     +  V R+   +N+L +  +  K  DF LS  + E  T+    +      + AP
Sbjct: 506 YLE---SKRFVHRDIAARNVLVSATDCVKLGDFGLSRYM-EDSTYYKASKGKLPIKWMAP 561
Query: 140 EYISICVLNEKSNVFSFGAFLFELL 164
           E I+       S+V+ FG  ++E+L
Sbjct: 562 ESINFRRFTSASDVWMFGVCMWEIL 586

>pdb|1XJD|A Chain A, Crystal Structure Of Pkc-Theta Complexed With Staurosporine At 2a Resolution Length = 345

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 71  ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRV 130
           A++I+  L +LH    + IV R+ K  NIL +++   K  DF +      G+    T+  
Sbjct: 124 AAEIILGLQFLH---SKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDA--KTNXF 178
Query: 131 IGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
            GT  Y APE +     N   + +SFG  L+E+L G+
Sbjct: 179 CGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQ 215

>pdb|2I0E|A Chain A, Structure Of Catalytic Domain Of Human Protein Kinase C Beta Ii Complexed With A Bisindolylmaleimide Inhibitor Length = 353

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 71  ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDF-LLSISIPEGETHITTDR 129
           A++I   L +L     + I+ R+ K  N++ + E   K  DF +   +I +G   +TT  
Sbjct: 127 AAEIAIGLFFLQ---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDG---VTTKX 180
Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
             GT  Y APE I+     +  + ++FG  L+E+LAG+
Sbjct: 181 FCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQ 218

>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A 5-Aminopyrimidinyl Quinazoline Inhibitor Length = 283

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           +++ N+L+Y H    + ++ R+ K +N+L       K  DF  S+  P       TD + 
Sbjct: 120 TELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRR---TD-LC 172
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           GT  Y  PE I   + +EK +++S G   +E L G+
Sbjct: 173 GTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 208

>pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase In Complex With Arq 069 Length = 306

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 17/154 (11%)
Query: 27  SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRL------------KIASDI 74
            H +I+  +G C Q     ++ +    G LR+ +     P L            +++S  
Sbjct: 81  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKD 140
Query: 75  VNSLAY-----LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR 129
           + S AY     + +   +  + R+   +N+L  E+NV K  DF L+  I   + +  T  
Sbjct: 141 LVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTN 200
Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL 163
                 + APE +   +   +S+V+SFG  L+E+
Sbjct: 201 GRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEI 234

>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With Adpnp Length = 275

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           +++ N+L+Y H    + ++ R+ K +N+L       K  DF  S+  P       TD + 
Sbjct: 115 TELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRR---TD-LC 167
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           GT  Y  PE I   + +EK +++S G   +E L G+
Sbjct: 168 GTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 203

>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With Lapatinib Length = 328

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 11/148 (7%)
Query: 24  AQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI------FGAPLPRLKIASDIVNS 77
           A M H H+++ +G CL +P   LV Q + +G L + +       G+ L  L     I   
Sbjct: 72  ASMDHPHLVRLLGVCL-SPTIQLVTQLMPHGCLLEYVHEHKDNIGSQL-LLNWCVQIAKG 129
Query: 78  LAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYS 137
           + YL     R +V R+   +N+L    N  K  DF L+  +   E     D       + 
Sbjct: 130 MMYLE---ERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWM 186
Query: 138 APEYISICVLNEKSNVFSFGAFLFELLA 165
           A E I       +S+V+S+G  ++EL+ 
Sbjct: 187 ALECIHYRKFTHQSDVWSYGVTIWELMT 214

>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A Gsk3beta Inhibitor Length = 287

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           +++ N+L+Y H    + ++ R+ K +N+L       K  DF  S+  P       TD + 
Sbjct: 115 TELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRR---TD-LC 167
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           GT  Y  PE I   + +EK +++S G   +E L G+
Sbjct: 168 GTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 203

>pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fibroblast Growth Factor Receptor 1 Length = 310

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 17/154 (11%)
Query: 27  SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRL------------KIASDI 74
            H +I+  +G C Q     ++ +    G LR+ +     P L            +++S  
Sbjct: 85  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKD 144
Query: 75  VNSLAY-----LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR 129
           + S AY     + +   +  + R+   +N+L  E+NV K  DF L+  I   + +  T  
Sbjct: 145 LVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTN 204
Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL 163
                 + APE +   +   +S+V+SFG  L+E+
Sbjct: 205 GRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEI 238

>pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast Growth Factor Receptor 1 In Complex With 5-(2-Thienyl) Nicotinic Acid Length = 317

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 17/154 (11%)
Query: 27  SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRL------------KIASDI 74
            H +I+  +G C Q     ++ +    G LR+ +     P L            +++S  
Sbjct: 92  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKD 151
Query: 75  VNSLAY-----LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR 129
           + S AY     + +   +  + R+   +N+L  E+NV K  DF L+  I   + +  T  
Sbjct: 152 LVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTN 211
Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL 163
                 + APE +   +   +S+V+SFG  L+E+
Sbjct: 212 GRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEI 245

>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A Inhibitors: Structure Basis For Potency And Specificity Length = 279

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           +++ N+L+Y H    + ++ R+ K +N+L       K  DF  S+  P       TD + 
Sbjct: 116 TELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRR---TD-LC 168
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           GT  Y  PE I   + +EK +++S G   +E L G+
Sbjct: 169 GTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 204

>pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor Receptor 1 Kinase Domain In Complex With Compound 1 Length = 309

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 67/154 (43%), Gaps = 17/154 (11%)
Query: 27  SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRL------------KIASDI 74
            H +I+  +G C Q     ++ +    G LR+ +     P L            +++S  
Sbjct: 84  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKD 143
Query: 75  VNSLAY-----LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR 129
           + S AY     + +   +  + R+   +N+L  E+NV K  DF L+  I   + +  T  
Sbjct: 144 LVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTN 203
Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL 163
                 + APE +   +   +S+V+SFG  L+E+
Sbjct: 204 GRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEI 237

>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1 Length = 297

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 46  LVFQSVEYGTLRDCIFGAPLPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEEN 105
           +V + +  G+L D +    +   +IA+     L  L F     ++ R+ K+ NIL   + 
Sbjct: 94  VVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDG 153
Query: 106 VAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA 165
             K  DF     I   ++  +T  ++GT  + APE ++      K +++S G    E++ 
Sbjct: 154 SVKLTDFGFCAQITPEQSKRST--MVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIE 211
Query: 166 G 166
           G
Sbjct: 212 G 212

>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In Rodent Cancer Tumor Models Length = 297

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 69/175 (39%), Gaps = 29/175 (16%)
Query: 26  MSHNHILKRIGCCLQTPIPILVFQSVEYGTLRD---------CIFGAPLPR--------- 67
           + H HI+K  G C      I+VF+ +++G L            I     PR         
Sbjct: 74  LQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLS 133
Query: 68  --LKIASDIVNSLAYL---HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGE 122
             L IAS I + + YL   HF      V R+  T+N L     + K  DF +S  +   +
Sbjct: 134 QMLHIASQIASGMVYLASQHF------VHRDLATRNCLVGANLLVKIGDFGMSRDVYSTD 187
Query: 123 THITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDT 177
            +      +    +  PE I       +S+V+SFG  L+E+       W  L +T
Sbjct: 188 YYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLSNT 242

>pdb|2J0L|A Chain A, Crystal Structure Of A The Active Conformation Of The Kinase Domain Of Focal Adhesion Kinase With A Phosphorylated Activation Loop Length = 276

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 65/145 (44%), Gaps = 10/145 (6%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI----FGAPLPRLKI-ASDIVNSLA 79
           Q  H HI+K IG   + P+ I + +    G LR  +    F   L  L + A  +  +LA
Sbjct: 67  QFDHPHIVKLIGVITENPVWI-IMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALA 125
Query: 80  YLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAP 139
           YL     +  V R+   +N+L +  +  K  DF LS  + E  T     +      + AP
Sbjct: 126 YLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYM-EDSTXXKASKGKLPIKWMAP 181
Query: 140 EYISICVLNEKSNVFSFGAFLFELL 164
           E I+       S+V+ FG  ++E+L
Sbjct: 182 ESINFRRFTSASDVWMFGVCMWEIL 206

>pdb|2OZO|A Chain A, Autoinhibited Intact Human Zap-70 Length = 613

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 12/148 (8%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKI-ASDIVNSLAYLHF 83
           Q+ + +I++ IG C Q    +LV +    G L   + G    R +I  S++   L  +  
Sbjct: 392 QLDNPYIVRLIGVC-QAEALMLVMEMAGGGPLHKFLVGK---REEIPVSNVAELLHQVSM 447
Query: 84  GFP----RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTR--GYS 137
           G      +  V RN   +N+L    + AK  DF LS ++   +++ T  R  G     + 
Sbjct: 448 GMKYLEEKNFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTA-RSAGKWPLKWY 506
Query: 138 APEYISICVLNEKSNVFSFGAFLFELLA 165
           APE I+    + +S+V+S+G  ++E L+
Sbjct: 507 APECINFRKFSSRSDVWSYGVTMWEALS 534

>pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase Domain With 3-(2,6-Dichloro-3, 5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1- Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398) Length = 382

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 77/178 (43%), Gaps = 26/178 (14%)
Query: 27  SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRL------------KIASDI 74
            H +I+  +G C Q     ++ +    G LR+ +     P L            +++S  
Sbjct: 133 KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKD 192
Query: 75  VNSLAY-----LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR 129
           + S AY     + +   +  + R+   +N+L  E+NV K  DF L+  I   + +  T  
Sbjct: 193 LVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTN 252
Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL--LAGRIH-------IWDLLKDTH 178
                 + APE +   +   +S+V+SFG  L+E+  L G  +       ++ LLK+ H
Sbjct: 253 GRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGH 310

>pdb|3BZ3|A Chain A, Crystal Structure Analysis Of Focal Adhesion Kinase With A Methanesulfonamide Diaminopyrimidine Inhibitor Length = 276

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 10/145 (6%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI----FGAPLPRLKI-ASDIVNSLA 79
           Q  H HI+K IG   + P+ I + +    G LR  +    +   L  L + A  +  +LA
Sbjct: 64  QFDHPHIVKLIGVITENPVWI-IMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALA 122
Query: 80  YLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAP 139
           YL     +  V R+   +N+L +  +  K  DF LS  + E  T+    +      + AP
Sbjct: 123 YLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYM-EDSTYYKASKGKLPIKWMAP 178
Query: 140 EYISICVLNEKSNVFSFGAFLFELL 164
           E I+       S+V+ FG  ++E+L
Sbjct: 179 ESINFRRFTSASDVWMFGVCMWEIL 203

>pdb|4G31|A Chain A, Crystal Structure Of Gsk6414 Bound To Perk (R587-R1092, Delete A660- T867) At 2.28 A Resolution Length = 299

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 68  LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITT 127
           L I   I  ++ +LH    + ++ R+ K  NI F  ++V K  DF L  ++ + E   T 
Sbjct: 121 LHIFLQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTV 177
Query: 128 ----------DRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELL 164
                        +GT+ Y +PE I     + K ++FS G  LFELL
Sbjct: 178 LTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELL 224

>pdb|2JKM|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Bis- Anilino Pyrimidine Inhibitor Length = 276

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 10/145 (6%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI----FGAPLPRLKI-ASDIVNSLA 79
           Q  H HI+K IG   + P+ I + +    G LR  +    +   L  L + A  +  +LA
Sbjct: 67  QFDHPHIVKLIGVITENPVWI-IMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALA 125
Query: 80  YLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAP 139
           YL     +  V R+   +N+L +  +  K  DF LS  + E  T+    +      + AP
Sbjct: 126 YLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYM-EDSTYYKASKGKLPIKWMAP 181
Query: 140 EYISICVLNEKSNVFSFGAFLFELL 164
           E I+       S+V+ FG  ++E+L
Sbjct: 182 ESINFRRFTSASDVWMFGVCMWEIL 206

>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine Inhibitor Length = 321

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 11/148 (7%)
Query: 24  AQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI------FGAPLPRLKIASDIVNS 77
           A M H H+++ +G CL +P   LV Q + +G L + +       G+ L  L     I   
Sbjct: 95  ASMDHPHLVRLLGVCL-SPTIQLVTQLMPHGCLLEYVHEHKDNIGSQL-LLNWCVQIAKG 152
Query: 78  LAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYS 137
           + YL     R +V R+   +N+L    N  K  DF L+  +   E     D       + 
Sbjct: 153 MMYLE---ERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWM 209
Query: 138 APEYISICVLNEKSNVFSFGAFLFELLA 165
           A E I       +S+V+S+G  ++EL+ 
Sbjct: 210 ALECIHYRKFTHQSDVWSYGVTIWELMT 237

>pdb|2ETM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative Length = 281

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 10/145 (6%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI----FGAPLPRLKI-ASDIVNSLA 79
           Q  H HI+K IG   + P+ I + +    G LR  +    +   L  L + A  +  +LA
Sbjct: 69  QFDHPHIVKLIGVITENPVWI-IMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALA 127
Query: 80  YLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAP 139
           YL     +  V R+   +N+L +  +  K  DF LS  + E  T+    +      + AP
Sbjct: 128 YLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYM-EDSTYYKASKGKLPIKWMAP 183
Query: 140 EYISICVLNEKSNVFSFGAFLFELL 164
           E I+       S+V+ FG  ++E+L
Sbjct: 184 ESINFRRFTSASDVWMFGVCMWEIL 208

>pdb|2J0M|B Chain B, Crystal Structure A Two-Chain Complex Between The Ferm And Kinase Domains Of Focal Adhesion Kinase. Length = 276

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 10/145 (6%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI----FGAPLPRLKI-ASDIVNSLA 79
           Q  H HI+K IG   + P+ I + +    G LR  +    +   L  L + A  +  +LA
Sbjct: 67  QFDHPHIVKLIGVITENPVWI-IMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALA 125
Query: 80  YLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAP 139
           YL     +  V R+   +N+L +  +  K  DF LS  + E  T+    +      + AP
Sbjct: 126 YLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYM-EDSTYYKASKGKLPIKWMAP 181
Query: 140 EYISICVLNEKSNVFSFGAFLFELL 164
           E I+       S+V+ FG  ++E+L
Sbjct: 182 ESINFRRFTSASDVWMFGVCMWEIL 206

>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7) Length = 318

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 67/152 (44%), Gaps = 29/152 (19%)
Query: 90  VLRNFKTQNILFNEENVAKWFDFLLSISI---PEGETHITTDRVIGTRGYSAPEYISICV 146
           V R+   +NIL N   V K  DF LS  I   PE   + TT   I  R ++APE I    
Sbjct: 167 VHRDLAARNILVNSNLVCKVSDFGLSRVIEDDPEA-VYTTTGGKIPVR-WTAPEAIQYRK 224
Query: 147 LNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPII 205
               S+V+S+G  ++E+++ G    WD+            + +K   E  R   +PAP+ 
Sbjct: 225 FTSASDVWSYGIVMWEVMSYGERPYWDMSN---------QDVIKAIEEGYR---LPAPM- 271
Query: 206 VQDIPCIEKEQQLHASAQLTLECVNNSPEDRP 237
             D P       LH   QL L+C      +RP
Sbjct: 272 --DCPA-----GLH---QLMLDCWQKERAERP 293

>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form) Length = 285

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           +++ N+L+Y H    + ++ R+ K +N+L       K  DF  S+  P   +  TT  + 
Sbjct: 120 TELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPS--SRRTT--LC 172
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           GT  Y  PE I   + +EK +++S G   +E L G+
Sbjct: 173 GTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 208

>pdb|3PXK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Pyrrolo[2,3- D]thiazole Length = 282

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 10/145 (6%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI----FGAPLPRLKI-ASDIVNSLA 79
           Q  H HI+K IG   + P+ I + +    G LR  +    +   L  L + A  +  +LA
Sbjct: 70  QFDHPHIVKLIGVITENPVWI-IMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALA 128
Query: 80  YLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAP 139
           YL     +  V R+   +N+L +  +  K  DF LS  + E  T+    +      + AP
Sbjct: 129 YLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYM-EDSTYYKASKGKLPIKWMAP 184
Query: 140 EYISICVLNEKSNVFSFGAFLFELL 164
           E I+       S+V+ FG  ++E+L
Sbjct: 185 ESINFRRFTSASDVWMFGVCMWEIL 209

>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine Inhibitor Length = 283

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           +++ N+L+Y H    + ++ R+ K +N+L       K  DF  S+  P   +  TT  + 
Sbjct: 118 TELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPS--SRRTT--LC 170
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           GT  Y  PE I   + +EK +++S G   +E L G+
Sbjct: 171 GTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 206

>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358 Length = 280

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           +++ N+L+Y H    + ++ R+ K +N+L       K  DF  S+  P   +  TT  + 
Sbjct: 115 TELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPS--SRRTT--LC 167
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           GT  Y  PE I   + +EK +++S G   +E L G+
Sbjct: 168 GTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 203

>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor Length = 285

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           +++ N+L+Y H    + ++ R+ K +N+L       K  DF  S+  P   +  TT  + 
Sbjct: 120 TELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPS--SRRTT--LC 172
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           GT  Y  PE I   + +EK +++S G   +E L G+
Sbjct: 173 GTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 208

>pdb|4EBW|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In Complex With Novel Allosteric Inhibitor Length = 304

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 10/145 (6%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI----FGAPLPRLKI-ASDIVNSLA 79
           Q  H HI+K IG   + P+ I + +    G LR  +    +   L  L + A  +  +LA
Sbjct: 95  QFDHPHIVKLIGVITENPVWI-IMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALA 153
Query: 80  YLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAP 139
           YL     +  V R+   +N+L +  +  K  DF LS  + E  T+    +      + AP
Sbjct: 154 YLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYM-EDSTYYKASKGKLPIKWMAP 209
Query: 140 EYISICVLNEKSNVFSFGAFLFELL 164
           E I+       S+V+ FG  ++E+L
Sbjct: 210 ESINFRRFTSASDVWMFGVCMWEIL 234

>pdb|1MP8|A Chain A, Crystal Structure Of Focal Adhesion Kinase (Fak) Length = 281

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 10/145 (6%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI----FGAPLPRLKI-ASDIVNSLA 79
           Q  H HI+K IG   + P+ I + +    G LR  +    +   L  L + A  +  +LA
Sbjct: 72  QFDHPHIVKLIGVITENPVWI-IMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALA 130
Query: 80  YLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAP 139
           YL     +  V R+   +N+L +  +  K  DF LS  + E  T+    +      + AP
Sbjct: 131 YLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYM-EDSTYYKASKGKLPIKWMAP 186
Query: 140 EYISICVLNEKSNVFSFGAFLFELL 164
           E I+       S+V+ FG  ++E+L
Sbjct: 187 ESINFRRFTSASDVWMFGVCMWEIL 211

>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase Length = 272

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           +++ N+L+Y H    + ++ R+ K +N+L       K  DF  S+  P   +  TT  + 
Sbjct: 119 TELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPS--SRRTT--LC 171
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           GT  Y  PE I   + +EK +++S G   +E L G+
Sbjct: 172 GTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 207

>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300 Length = 280

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           +++ N+L+Y H    + ++ R+ K +N+L       K  DF  S+  P          + 
Sbjct: 115 TELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRR----TELC 167
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           GT  Y  PE I   + +EK +++S G   +E L G+
Sbjct: 168 GTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 203

>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine- Threonine Kinase Length = 297

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           +++ N+L+Y H    + ++ R+ K +N+L       K  DF  S+  P   +  TT  + 
Sbjct: 132 TELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPS--SRRTT--LC 184
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           GT  Y  PE I   + +EK +++S G   +E L G+
Sbjct: 185 GTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 220

>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626 Length = 306

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           +++ N+L+Y H    + ++ R+ K +N+L       K  DF  S+  P   +  TT  + 
Sbjct: 141 TELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPS--SRRTT--LC 193
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           GT  Y  PE I   + +EK +++S G   +E L G+
Sbjct: 194 GTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 229

>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa Length = 267

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           +++ N+L+Y H    + ++ R+ K +N+L       K  DF  S+  P   +  TT  + 
Sbjct: 114 TELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPS--SRRTT--LC 166
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           GT  Y  PE I   + +EK +++S G   +E L G+
Sbjct: 167 GTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 202

>pdb|3QD2|B Chain B, Crsytal Structure Of Mouse Perk Kinase Domain Length = 332

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 13/107 (12%)
Query: 68  LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGE----- 122
           L I   I  ++ +LH    + ++ R+ K  NI F  ++V K  DF L  ++ + E     
Sbjct: 167 LHIFIQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTV 223
Query: 123 -----THITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELL 164
                 + T    +GT+ Y +PE I     + K ++FS G  LFELL
Sbjct: 224 LTPMPAYATHXGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELL 270

>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 95/235 (40%), Gaps = 47/235 (20%)
Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTL------RDCIFG-----APL 65
           ++  +   Q  H +I++  G   +  + ++V + +E G+L       D  F        L
Sbjct: 98  LSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQFTIMQLVGML 157
Query: 66  PRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEG--ET 123
             +      ++ L Y+H         R+   +N+L +   V K  DF LS  + +     
Sbjct: 158 RGVGAGMRYLSDLGYVH---------RDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAA 208
Query: 124 HITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGC 182
             TT   I  R ++APE I+    +  S+V+SFG  ++E+LA G    W++         
Sbjct: 209 XTTTGGKIPIR-WTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTN------- 260
Query: 183 FFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRP 237
              + + +  E  R   +PAP+              HA  QL L+C +     RP
Sbjct: 261 --RDVISSVEEGYR---LPAPMGCP-----------HALHQLMLDCWHKDRAQRP 299

>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain Length = 299

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 67/166 (40%), Gaps = 26/166 (15%)
Query: 26  MSHNHILKRIGCCLQTPIPILVFQSVEYGTLR--------DCIF---GAPLPRLK----- 69
           + H HI+K  G C++    I+VF+ +++G L         D +    G P   L      
Sbjct: 72  LQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQML 131
Query: 70  -IASDIVNSLAYL---HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHI 125
            IA  I   + YL   HF      V R+  T+N L  E  + K  DF +S  +   + + 
Sbjct: 132 HIAQQIAAGMVYLASQHF------VHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYR 185
Query: 126 TTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIW 171
                +    +  PE I       +S+V+S G  L+E+       W
Sbjct: 186 VGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPW 231

>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2 Chain) Length = 276

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 81/186 (43%), Gaps = 18/186 (9%)
Query: 14  GSCINNITYAAQMSHNHILKRIGCCLQTPIPI-LVFQSVEYGTLRD--CIFG--APLPRL 68
           G     I       H HI+K +   + TP    +V + V  G L D  C  G    +   
Sbjct: 56  GKIKREIQNLKLFRHPHIIK-LYQVISTPTDFFMVMEYVSGGELFDYICKHGRVEEMEAR 114
Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTD 128
           ++   I++++ Y H      +V R+ K +N+L +    AK  DF LS  + +GE   T+ 
Sbjct: 115 RLFQQILSAVDYCHRHM---VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTS- 170
Query: 129 RVIGTRGYSAPEYIS-ICVLNEKSNVFSFGAFLFELLAGRI-----HIWDLLKDTHDHGC 182
              G+  Y+APE IS       + +++S G  L+ LL G +     H+  L K       
Sbjct: 171 --CGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFKKIRGGVF 228
Query: 183 FFNEYL 188
           +  EYL
Sbjct: 229 YIPEYL 234

>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           +++ N+L+Y H    + ++ R+ K +N+L       K  DF  S+  P   +  TT  + 
Sbjct: 118 TELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPS--SRRTT--LC 170
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           GT  Y  PE I   + +EK +++S G   +E L G+
Sbjct: 171 GTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 206

>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant Length = 262

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           +++ N+L+Y H    + ++ R+ K +N+L       K  DF  S+  P      TT  + 
Sbjct: 112 TELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRR--TT--LC 164
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           GT  Y  PE I   + +EK +++S G   +E L G+
Sbjct: 165 GTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 200

>pdb|3CJF|A Chain A, Crystal Structure Of Vegfr2 In Complex With A 3,4,5-Trimethoxy Aniline Containing Pyrimidine Length = 309

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 66/158 (41%), Gaps = 21/158 (13%)
Query: 81  LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPE 140
           + F   R  + R+   +NIL +E+NV K  DF L+  I +   ++          + APE
Sbjct: 157 MEFLASRKXIHRDLAARNILLSEKNVVKIXDFGLARDIYKDPDYVRKGDARLPLKWMAPE 216
Query: 141 YISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGI 200
            I   V   +S+V+SFG  L+E+ +        L  +   G   +E     L  K  T +
Sbjct: 217 TIFDRVYTIQSDVWSFGVLLWEIFS--------LGASPYPGVKIDEEFXRRL--KEGTRM 266
Query: 201 PAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT 238
            AP    D    E  Q +       L+C +  P  RPT
Sbjct: 267 RAP----DYTTPEMYQTM-------LDCWHGEPSQRPT 293

>pdb|2Z8C|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin-2- Yl]amino}phenyl)acetic Acid Length = 303

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/163 (20%), Positives = 74/163 (45%), Gaps = 17/163 (10%)
Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIF----------GAPLP 66
           +N  +     + +H+++ +G   +    ++V + + +G L+  +           G P P
Sbjct: 65  LNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPP 124
Query: 67  RLK----IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGE 122
            L+    +A++I + +AYL+    +  V R+   +N +   +   K  DF ++  I E +
Sbjct: 125 TLQEMIQMAAEIADGMAYLN---AKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIXETD 181
Query: 123 THITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA 165
                 + +    + APE +   V    S+++SFG  L+E+ +
Sbjct: 182 XXRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITS 224

>pdb|3GQI|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 17/154 (11%)
Query: 27  SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRL------------KIASDI 74
            H +I+  +G C Q     ++ +    G LR+ +     P L            +++S  
Sbjct: 92  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEFSFNPSHNPEEQLSSKD 151
Query: 75  VNSLAY-----LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR 129
           + S AY     + +   +  + R+   +N+L  E+NV K  DF L+  I   +    T  
Sbjct: 152 LVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDXXKKTTN 211
Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL 163
                 + APE +   +   +S+V+SFG  L+E+
Sbjct: 212 GRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEI 245

>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 71/166 (42%), Gaps = 27/166 (16%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI---------------------FGA 63
           Q++H H++K  G C Q    +L+ +  +YG+LR  +                        
Sbjct: 82  QVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDH 141
Query: 64  PLPRLKIASDIVNSLAY-----LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISI 118
           P  R     D++ S A+     + +     +V R+   +NIL  E    K  DF LS  +
Sbjct: 142 PDERALTMGDLI-SFAWQISQGMQYLAEMKLVHRDLAARNILVAEGRKMKISDFGLSRDV 200
Query: 119 PEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELL 164
            E ++++   +      + A E +   +   +S+V+SFG  L+E++
Sbjct: 201 YEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIV 246

>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A Pentacyclic Inhibitor Length = 268

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           +++ N+L+Y H    + ++ R+ K +N+L       K  DF  S+  P          + 
Sbjct: 115 TELANALSYCH---SKKVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRAA----LC 167
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           GT  Y  PE I   + +EK +++S G   +E L G+
Sbjct: 168 GTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 203

>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure Length = 285

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           +++ N+L+Y H    + ++ R+ K +N+L       K  DF  S+  P          + 
Sbjct: 120 TELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRXX----LX 172
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           GT  Y  PE I   + +EK +++S G   +E L G+
Sbjct: 173 GTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 208

>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human Rsk-1 Bound To Amp-Pcp Length = 321

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 89  IVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLN 148
           I+ R+ K +NIL +EE   K  DF LS    + E    +    GT  Y APE ++    +
Sbjct: 151 IIYRDLKPENILLDEEGHIKLTDFGLSKEAIDHEKKAYS--FCGTVEYMAPEVVNRQGHS 208
Query: 149 EKSNVFSFGAFLFELLAGRI 168
             ++ +S+G  +FE+L G +
Sbjct: 209 HSADWWSYGVLMFEMLTGSL 228

>pdb|1IR3|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex With Peptide Substrate And Atp Analog Length = 306

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/163 (20%), Positives = 74/163 (45%), Gaps = 17/163 (10%)
Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIF----------GAPLP 66
           +N  +     + +H+++ +G   +    ++V + + +G L+  +           G P P
Sbjct: 68  LNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPP 127
Query: 67  RLK----IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGE 122
            L+    +A++I + +AYL+    +  V R+   +N +   +   K  DF ++  I E +
Sbjct: 128 TLQEMIQMAAEIADGMAYLN---AKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIXETD 184
Query: 123 THITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA 165
                 + +    + APE +   V    S+++SFG  L+E+ +
Sbjct: 185 XXRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITS 227

>pdb|1RQQ|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In Complex With The Sh2 Domain Of Aps Length = 306

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/163 (20%), Positives = 74/163 (45%), Gaps = 17/163 (10%)
Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIF----------GAPLP 66
           +N  +     + +H+++ +G   +    ++V + + +G L+  +           G P P
Sbjct: 68  LNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPP 127
Query: 67  RLK----IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGE 122
            L+    +A++I + +AYL+    +  V R+   +N +   +   K  DF ++  I E +
Sbjct: 128 TLQEMIQMAAEIADGMAYLN---AKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIXETD 184
Query: 123 THITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA 165
                 + +    + APE +   V    S+++SFG  L+E+ +
Sbjct: 185 XXRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITS 227

>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287, Thr288 And Bound To Tpx2 1-43 Length = 282

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           +++ N+L+Y H    + ++ R+ K +N+L       K  DF  S+  P          + 
Sbjct: 117 TELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRXX----LC 169
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           GT  Y  PE I   + +EK +++S G   +E L G+
Sbjct: 170 GTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 205

>pdb|2XIR|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With Pf-00337210 (N,2-Dimethyl-6-(7-(2-Morpholinoethoxy) Quinolin-4-Yloxy)benzofuran-3-Carboxamide) Length = 316

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 43/85 (50%)
Query: 81  LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPE 140
           + F   R  + R+   +NIL +E+NV K  DF L+  I +   ++          + APE
Sbjct: 161 MEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPE 220
Query: 141 YISICVLNEKSNVFSFGAFLFELLA 165
            I   V   +S+V+SFG  L+E+ +
Sbjct: 221 TIFDRVYTIQSDVWSFGVLLWEIFS 245

>pdb|3VNT|A Chain A, Crystal Structure Of The Kinase Domain Of Human Vegfr2 With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 318

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 43/85 (50%)
Query: 81  LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPE 140
           + F   R  + R+   +NIL +E+NV K  DF L+  I +   ++          + APE
Sbjct: 163 MEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPE 222
Query: 141 YISICVLNEKSNVFSFGAFLFELLA 165
            I   V   +S+V+SFG  L+E+ +
Sbjct: 223 TIFDRVYTIQSDVWSFGVLLWEIFS 247

>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors Length = 283

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           +++ N+L+Y H    + ++ R+ K +N+L       K  DF  S+  P          + 
Sbjct: 118 TELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRAA----LC 170
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           GT  Y  PE I   + +EK +++S G   +E L G+
Sbjct: 171 GTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 206

>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           +++ N+L+Y H    + ++ R+ K +N+L       K  DF  S+  P          + 
Sbjct: 118 TELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRXX----LC 170
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           GT  Y  PE I   + +EK +++S G   +E L G+
Sbjct: 171 GTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 206

>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And Compound 10 Length = 268

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           +++ N+L+Y H    + ++ R+ K +N+L       K  DF  S+  P          + 
Sbjct: 115 TELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRXX----LC 167
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           GT  Y  PE I   + +EK +++S G   +E L G+
Sbjct: 168 GTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 203

>pdb|3ETA|A Chain A, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo Pyridine Inhibitor Length = 317

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/163 (20%), Positives = 75/163 (46%), Gaps = 17/163 (10%)
Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIF----------GAPLP 66
           +N  +     + +H+++ +G   +    ++V + + +G L+  +           G P P
Sbjct: 67  LNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPP 126
Query: 67  RLK----IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGE 122
            L+    +A++I + +AYL+    +  V R+   +N +   +   K  DF ++  I E +
Sbjct: 127 TLQEMIQMAAEIADGMAYLN---AKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETD 183
Query: 123 THITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA 165
            +    + +    + APE +   V    S+++SFG  L+E+ +
Sbjct: 184 YYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITS 226

>pdb|1Y6A|A Chain A, Crystal Structure Of Vegfr2 In Complex With A 2-Anilino-5-Aryl-Oxazole Inhibitor Length = 366

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 43/85 (50%)
Query: 81  LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPE 140
           + F   R  + R+   +NIL +E+NV K  DF L+  I +   ++          + APE
Sbjct: 211 MEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPE 270
Query: 141 YISICVLNEKSNVFSFGAFLFELLA 165
            I   V   +S+V+SFG  L+E+ +
Sbjct: 271 TIFDRVYTIQSDVWSFGVLLWEIFS 295

>pdb|1IRK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Human Insulin Receptor Length = 306

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/163 (20%), Positives = 75/163 (46%), Gaps = 17/163 (10%)
Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIF----------GAPLP 66
           +N  +     + +H+++ +G   +    ++V + + +G L+  +           G P P
Sbjct: 68  LNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPP 127
Query: 67  RLK----IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGE 122
            L+    +A++I + +AYL+    +  V R+   +N +   +   K  DF ++  I E +
Sbjct: 128 TLQEMIQMAAEIADGMAYLN---AKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETD 184
Query: 123 THITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA 165
            +    + +    + APE +   V    S+++SFG  L+E+ +
Sbjct: 185 YYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITS 227

>pdb|2I0V|A Chain A, C-Fms Tyrosine Kinase In Complex With A Quinolone Inhibitor Length = 335

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 68  LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITT 127
           L  +S +   +A+L     +  + R+   +N+L    +VAK  DF L+  I     +I  
Sbjct: 169 LHFSSQVAQGMAFLA---SKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVK 225
Query: 128 DRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA 165
                   + APE I  CV   +S+V+S+G  L+E+ +
Sbjct: 226 GNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFS 263

>pdb|3U6J|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyrazolone Inhibitor Length = 314

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 43/85 (50%)
Query: 81  LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPE 140
           + F   R  + R+   +NIL +E+NV K  DF L+  I +   ++          + APE
Sbjct: 152 MEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPE 211
Query: 141 YISICVLNEKSNVFSFGAFLFELLA 165
            I   V   +S+V+SFG  L+E+ +
Sbjct: 212 TIFDRVYTIQSDVWSFGVLLWEIFS 236

>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And Tpx2 Length = 268

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           +++ N+L+Y H    + ++ R+ K +N+L       K  DF  S+  P          + 
Sbjct: 115 TELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRR----TXLC 167
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           GT  Y  PE I   + +EK +++S G   +E L G+
Sbjct: 168 GTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 203

>pdb|3ALN|A Chain A, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase Domain Complexed With Amp-Pnp Length = 327

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 54/119 (45%), Gaps = 11/119 (9%)
Query: 53  YGTLRDCIFGAPLPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDF 112
           Y  L D I    L ++ +A+  V +L +L       I+ R+ K  NIL +     K  DF
Sbjct: 115 YSVLDDVIPEEILGKITLAT--VKALNHLKENLK--IIHRDIKPSNILLDRSGNIKLCDF 170
Query: 113 LLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNE----KSNVFSFGAFLFELLAGR 167
            +S  + +    I   R  G R Y APE I      +    +S+V+S G  L+EL  GR
Sbjct: 171 GISGQLVDS---IAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGR 226

>pdb|3EWH|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyridyl-Pyrimidine Benzimidazole Inhibitor Length = 314

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 43/85 (50%)
Query: 81  LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPE 140
           + F   R  + R+   +NIL +E+NV K  DF L+  I +   ++          + APE
Sbjct: 152 MEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPE 211
Query: 141 YISICVLNEKSNVFSFGAFLFELLA 165
            I   V   +S+V+SFG  L+E+ +
Sbjct: 212 TIFDRVYTIQSDVWSFGVLLWEIFS 236

>pdb|3CJG|A Chain A, Crystal Structure Of Vegfr2 In Complex With A 3,4,5-Trimethoxy Aniline Containing Pyrimidine Length = 309

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 43/85 (50%)
Query: 81  LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPE 140
           + F   R  + R+   +NIL +E+NV K  DF L+  I +   ++          + APE
Sbjct: 157 MEFLASRKXIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPE 216
Query: 141 YISICVLNEKSNVFSFGAFLFELLA 165
            I   V   +S+V+SFG  L+E+ +
Sbjct: 217 TIFDRVYTIQSDVWSFGVLLWEIFS 241

>pdb|1YWN|A Chain A, Vegfr2 In Complex With A Novel 4-amino-furo[2,3-d]pyrimidine Length = 316

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 42/85 (49%)
Query: 81  LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPE 140
           + F   R  + R+   +NIL +E+NV K  DF L+  I +    +          + APE
Sbjct: 161 MEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIXKDPDXVRKGDARLPLKWMAPE 220
Query: 141 YISICVLNEKSNVFSFGAFLFELLA 165
            I   V   +S+V+SFG  L+E+ +
Sbjct: 221 TIFDRVYTIQSDVWSFGVLLWEIFS 245

>pdb|3VHK|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Back Pocket Binder Length = 368

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 43/85 (50%)
Query: 81  LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPE 140
           + F   R  + R+   +NIL +E+NV K  DF L+  I +   ++          + APE
Sbjct: 213 MEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPE 272
Query: 141 YISICVLNEKSNVFSFGAFLFELLA 165
            I   V   +S+V+SFG  L+E+ +
Sbjct: 273 TIFDRVYTIQSDVWSFGVLLWEIFS 297

>pdb|3HNG|A Chain A, Crystal Structure Of Vegfr1 In Complex With N-(4-chlorophenyl)-2- ((pyridin-4-ylmethyl)amino)benzamide Length = 360

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 43/85 (50%)
Query: 81  LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPE 140
           + F   R  + R+   +NIL +E NV K  DF L+  I +   ++          + APE
Sbjct: 212 MEFLSSRKCIHRDLAARNILLSENNVVKICDFGLARDIYKNPDYVRKGDTRLPLKWMAPE 271
Query: 141 YISICVLNEKSNVFSFGAFLFELLA 165
            I   + + KS+V+S+G  L+E+ +
Sbjct: 272 SIFDKIYSTKSDVWSYGVLLWEIFS 296

>pdb|3LCO|A Chain A, Inhibitor Bound To A Dfg-Out Structure Of The Kinase Domain Of Csf-1r Length = 324

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 68  LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITT 127
           L  +S +   +A+L     +  + R+   +N+L    +VAK  DF L+  I     +I  
Sbjct: 161 LHFSSQVAQGMAFLA---SKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVK 217
Query: 128 DRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA 165
                   + APE I  CV   +S+V+S+G  L+E+ +
Sbjct: 218 GNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFS 255

>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine Length = 268

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           +++ N+L+Y H    + ++ R+ K +N+L       K  DF  S+  P          + 
Sbjct: 115 TELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRAA----LC 167
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           GT  Y  PE I   + +EK +++S G   +E L G+
Sbjct: 168 GTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 203

>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp Length = 285

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           +++ N+L+Y H    + ++ R+ K +N+L       K  DF  S+  P   +  TT  + 
Sbjct: 120 TELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPS--SRRTT--LC 172
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           GT  Y  PE I     +EK +++S G   +E L G+
Sbjct: 173 GTLDYLPPEXIEGRXHDEKVDLWSLGVLCYEFLVGK 208

>pdb|3VID|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With Compound A Length = 356

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 43/85 (50%)
Query: 81  LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPE 140
           + F   R  + R+   +NIL +E+NV K  DF L+  I +   ++          + APE
Sbjct: 204 MEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPE 263
Query: 141 YISICVLNEKSNVFSFGAFLFELLA 165
            I   V   +S+V+SFG  L+E+ +
Sbjct: 264 TIFDRVYTIQSDVWSFGVLLWEIFS 288

>pdb|2OH4|A Chain A, Crystal Structure Of Vegfr2 With A Benzimidazole-Urea Inhibitor Length = 316

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 42/85 (49%)
Query: 81  LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPE 140
           + F   R  + R+   +NIL +E+NV K  DF L+  I +    +          + APE
Sbjct: 161 MEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIXKDPDXVRKGDARLPLKWMAPE 220
Query: 141 YISICVLNEKSNVFSFGAFLFELLA 165
            I   V   +S+V+SFG  L+E+ +
Sbjct: 221 TIFDRVYTIQSDVWSFGVLLWEIFS 245

>pdb|4AGC|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase Domains) In Complex With Axitinib (Ag-013736) (N-Methyl-2-( 3-((E)-2-Pyridin-2-Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)- Benzamide) Length = 353

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 43/85 (50%)
Query: 81  LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPE 140
           + F   R  + R+   +NIL +E+NV K  DF L+  I +   ++          + APE
Sbjct: 198 MEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPE 257
Query: 141 YISICVLNEKSNVFSFGAFLFELLA 165
            I   V   +S+V+SFG  L+E+ +
Sbjct: 258 TIFDRVYTIQSDVWSFGVLLWEIFS 282

>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240->arg, Met302- >leu) In Complex With 1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]- Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea Length = 272

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           +++ N+L+Y H    + ++ R+ K +N+L       K  DF  S+  P      TT  + 
Sbjct: 119 TELANALSYCH---SKRVIHRDIKPENLLLGSNGELKIADFGWSVHAPSSRR--TT--LC 171
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
           GT  Y  PE I   + +EK +++S G   +E L G
Sbjct: 172 GTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVG 206

>pdb|3VHE|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With A Novel Pyrrolopyrimidine Inhibitor Length = 359

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 43/85 (50%)
Query: 81  LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPE 140
           + F   R  + R+   +NIL +E+NV K  DF L+  I +   ++          + APE
Sbjct: 206 MEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPE 265
Query: 141 YISICVLNEKSNVFSFGAFLFELLA 165
            I   V   +S+V+SFG  L+E+ +
Sbjct: 266 TIFDRVYTIQSDVWSFGVLLWEIFS 290

>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7 Length = 310

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 84/232 (36%), Gaps = 27/232 (11%)
Query: 14  GSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI--FGAP---LPRL 68
             CI  I    Q++H +++K     ++     +V +  + G L   I  F      +P  
Sbjct: 77  ADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPER 136
Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTD 128
            +    V   + L     R ++ R+ K  N+      V K  D  L        T     
Sbjct: 137 TVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTT--AAH 194
Query: 129 RVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYL 188
            ++GT  Y +PE I     N KS+++S G  L+E+ A +               F+ + +
Sbjct: 195 SLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQ-------------SPFYGDKM 241
Query: 189 KNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV 240
             Y   K+           D P +  +       QL   C+N  PE RP + 
Sbjct: 242 NLYSLCKKIEQC-------DYPPLPSDHYSEELRQLVNMCINPDPEKRPDVT 286

>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g Hyperactivating Mutant In Apo Form. Length = 303

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 70/163 (42%), Gaps = 25/163 (15%)
Query: 22  YAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPR-----LKIASDIVN 76
           YAA +   + +K +    +     +  +  E GTL D I    L +      ++   I+ 
Sbjct: 68  YAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQILE 127
Query: 77  SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLL--------------SISIPEGE 122
           +L+Y+H    + I+ R+ K  NI  +E    K  DF L              S ++P   
Sbjct: 128 ALSYIH---SQGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSS 184
Query: 123 THITTDRVIGTRGYSAPEYI-SICVLNEKSNVFSFGAFLFELL 164
            ++T+   IGT  Y A E +      NEK +++S G   FE++
Sbjct: 185 DNLTS--AIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMI 225

>pdb|3C7Q|A Chain A, Structure Of Vegfr2 Kinase Domain In Complex With Bibf1120 Length = 316

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 42/85 (49%)
Query: 81  LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPE 140
           + F   R  + R+   +NIL +E+NV K  DF L+  I +    +          + APE
Sbjct: 161 MEFLASRKXIHRDLAARNILLSEKNVVKICDFGLARDIXKDPDXVRKGDARLPLKWMAPE 220
Query: 141 YISICVLNEKSNVFSFGAFLFELLA 165
            I   V   +S+V+SFG  L+E+ +
Sbjct: 221 TIFDRVYTIQSDVWSFGVLLWEIFS 245

>pdb|1U59|A Chain A, Crystal Structure Of The Zap-70 Kinase Domain In Complex With Staurosporine Length = 287

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 69/145 (47%), Gaps = 6/145 (4%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA--PLPRLKIASDIVNSLAYLH 82
           Q+ + +I++ IG C Q    +LV +    G L   + G    +P   +A  +      + 
Sbjct: 66  QLDNPYIVRLIGVC-QAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMK 124
Query: 83  FGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTR--GYSAPE 140
           +   +  V R+   +N+L    + AK  DF LS ++   +++ T  R  G     + APE
Sbjct: 125 YLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTA-RSAGKWPLKWYAPE 183
Query: 141 YISICVLNEKSNVFSFGAFLFELLA 165
            I+    + +S+V+S+G  ++E L+
Sbjct: 184 CINFRKFSSRSDVWSYGVTMWEALS 208

>pdb|2P2I|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Nicotinamide Inhibitor Length = 314

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 42/85 (49%)
Query: 81  LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPE 140
           + F   R  + R+   +NIL +E+NV K  DF L+  I +    +          + APE
Sbjct: 152 MEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIXKDPDXVRKGDARLPLKWMAPE 211
Query: 141 YISICVLNEKSNVFSFGAFLFELLA 165
            I   V   +S+V+SFG  L+E+ +
Sbjct: 212 TIFDRVYTIQSDVWSFGVLLWEIFS 236

>pdb|2P2H|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyridinyl-Triazine Inhibitor Length = 314

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 42/85 (49%)
Query: 81  LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPE 140
           + F   R  + R+   +NIL +E+NV K  DF L+  I +    +          + APE
Sbjct: 152 MEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIXKDPDXVRKGDARLPLKWMAPE 211
Query: 141 YISICVLNEKSNVFSFGAFLFELLA 165
            I   V   +S+V+SFG  L+E+ +
Sbjct: 212 TIFDRVYTIQSDVWSFGVLLWEIFS 236

>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1) Length = 307

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Query: 68  LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITT 127
           + IA      + YLH    + I+ R+ K+ NI  +E    K  DF L+            
Sbjct: 135 IDIARQTAQGMDYLH---AKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQV 191
Query: 128 DRVIGTRGYSAPEYISICVLNE---KSNVFSFGAFLFELLAGRI 168
           ++  G+  + APE I +   N    +S+V+S+G  L+EL+ G +
Sbjct: 192 EQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGEL 235

>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex Length = 438

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 96/223 (43%), Gaps = 51/223 (22%)
Query: 26  MSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFG-----APLPRL-KIASDIVNSLA 79
           + H+ ++K      + PI I+  + +  G+L D +        PLP+L   ++ I   +A
Sbjct: 234 LQHDKLVKLHAVVTKEPIYIIT-EFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMA 292
Query: 80  YLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTR---GY 136
           ++     R  + R+ +  NIL +   V K  DF L+               +G +    +
Sbjct: 293 FIE---QRNYIHRDLRAANILVSASLVCKIADFGLA--------------RVGAKFPIKW 335
Query: 137 SAPEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDK 195
           +APE I+      KS+V+SFG  L E++  GRI           +    N  +   LE  
Sbjct: 336 TAPEAINFGSFTIKSDVWSFGILLMEIVTYGRI----------PYPGMSNPEVIRALE-- 383
Query: 196 RFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT 238
           R   +P P   ++ P     ++L+    + + C  N PE+RPT
Sbjct: 384 RGYRMPRP---ENCP-----EELY---NIMMRCWKNRPEERPT 415

>pdb|3KL8|A Chain A, Camkiintide Inhibitor Complex Length = 269

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 69/161 (42%), Gaps = 15/161 (9%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIAS----DIVNSLAY 80
           ++ H +I++      +     LVF  V  G L + I          AS     I+ S+AY
Sbjct: 61  KLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAREFYSEADASHCIQQILESIAY 120
Query: 81  LHFGFPRPIVLRNFKTQNILFNEEN---VAKWFDFLLSISIPEGETHITTDRVIGTRGYS 137
            H      IV RN K +N+L   +      K  DF L+I + + E         GT GY 
Sbjct: 121 CH---SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEA---WHGFAGTPGYL 174
Query: 138 APEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTH 178
           +PE +     ++  ++++ G  L+ LL G    WD  +D H
Sbjct: 175 SPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWD--EDQH 213

>pdb|3KK9|A Chain A, Camkii Substrate Complex B Length = 282

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 69/161 (42%), Gaps = 15/161 (9%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIAS----DIVNSLAY 80
           ++ H +I++      +     LVF  V  G L + I          AS     I+ S+AY
Sbjct: 60  KLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAREFYSEADASHCIQQILESIAY 119
Query: 81  LHFGFPRPIVLRNFKTQNILFNEEN---VAKWFDFLLSISIPEGETHITTDRVIGTRGYS 137
            H      IV RN K +N+L   +      K  DF L+I + + E         GT GY 
Sbjct: 120 CH---SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEA---WHGFAGTPGYL 173
Query: 138 APEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTH 178
           +PE +     ++  ++++ G  L+ LL G    WD  +D H
Sbjct: 174 SPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWD--EDQH 212

>pdb|3KK8|A Chain A, Camkii Substrate Complex A Length = 284

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 69/161 (42%), Gaps = 15/161 (9%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIAS----DIVNSLAY 80
           ++ H +I++      +     LVF  V  G L + I          AS     I+ S+AY
Sbjct: 61  KLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAREFYSEADASHCIQQILESIAY 120
Query: 81  LHFGFPRPIVLRNFKTQNILFNEEN---VAKWFDFLLSISIPEGETHITTDRVIGTRGYS 137
            H      IV RN K +N+L   +      K  DF L+I + + E         GT GY 
Sbjct: 121 CH---SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEA---WHGFAGTPGYL 174
Query: 138 APEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTH 178
           +PE +     ++  ++++ G  L+ LL G    WD  +D H
Sbjct: 175 SPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWD--EDQH 213

>pdb|4HZR|A Chain A, Crystal Structure Of Ack1 Kinase Domain Length = 277

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 92/232 (39%), Gaps = 35/232 (15%)
Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI-------FGAPLPRLK 69
           I  +     + H ++++  G  L  P+  +V +    G+L D +           L R  
Sbjct: 63  IREVNAMHSLDHRNLIRLYGVVLTPPMK-MVTELAPLGSLLDRLRKHQGHFLLGTLSR-- 119
Query: 70  IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH-ITTD 128
            A  +   + YL     +  + R+   +N+L    ++ K  DF L  ++P+ + H +  +
Sbjct: 120 YAVQVAEGMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQE 176
Query: 129 RVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYL 188
                  + APE +     +  S+ + FG  L+E+       W         G   ++ L
Sbjct: 177 HRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPW--------IGLNGSQIL 228
Query: 189 KNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV 240
                DK    +P P   +D P     Q ++    + ++C  + PEDRPT V
Sbjct: 229 HKI--DKEGERLPRP---EDCP-----QDIY---NVMVQCWAHKPEDRPTFV 267

>pdb|4ID7|A Chain A, Ack1 Kinase In Complex With The Inhibitor Cis-3-[8-amino-1-(4- Phenoxyphenyl)imidazo[1,5-a]pyrazin-3-yl]cyclobutanol Length = 273

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 92/232 (39%), Gaps = 35/232 (15%)
Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI-------FGAPLPRLK 69
           I  +     + H ++++  G  L  P+  +V +    G+L D +           L R  
Sbjct: 59  IREVNAMHSLDHRNLIRLYGVVLTPPMK-MVTELAPLGSLLDRLRKHQGHFLLGTLSR-- 115
Query: 70  IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH-ITTD 128
            A  +   + YL     +  + R+   +N+L    ++ K  DF L  ++P+ + H +  +
Sbjct: 116 YAVQVAEGMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQE 172
Query: 129 RVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYL 188
                  + APE +     +  S+ + FG  L+E+       W         G   ++ L
Sbjct: 173 HRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPW--------IGLNGSQIL 224
Query: 189 KNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV 240
                DK    +P P   +D P     Q ++    + ++C  + PEDRPT V
Sbjct: 225 HKI--DKEGERLPRP---EDCP-----QDIY---NVMVQCWAHKPEDRPTFV 263

>pdb|3EQC|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Ternary Complex With Compound 1, Atp-Gs And Mg2p Length = 360

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTD 128
           K++  ++  L YL       I+ R+ K  NIL N     K  DF +S  + +       +
Sbjct: 135 KVSIAVIKGLTYLRE--KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS----MAN 188
Query: 129 RVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHI 170
             +GTR Y +PE +     + +S+++S G  L E+  GR  I
Sbjct: 189 SFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPI 230

>pdb|1S9J|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Complex With Ligand And Mgatp Length = 341

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTD 128
           K++  ++  L YL       I+ R+ K  NIL N     K  DF +S  + +       +
Sbjct: 108 KVSIAVIKGLTYLRE--KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS----MAN 161
Query: 129 RVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHI 170
             +GTR Y +PE +     + +S+++S G  L E+  GR  I
Sbjct: 162 SFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPI 203

>pdb|2Y4I|C Chain C, Ksr2-Mek1 Heterodimer Length = 395

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTD 128
           K++  ++  L YL       I+ R+ K  NIL N     K  DF +S  + +       +
Sbjct: 170 KVSIAVIKGLTYLRE--KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS----MAN 223
Query: 129 RVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHI 170
             +GTR Y +PE +     + +S+++S G  L E+  GR  I
Sbjct: 224 SFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPI 265

>pdb|2P55|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Complex With Ligand And Mgatp Length = 333

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTD 128
           K++  ++  L YL       I+ R+ K  NIL N     K  DF +S  + +       +
Sbjct: 108 KVSIAVIKGLTYLRE--KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS----MAN 161
Query: 129 RVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHI 170
             +GTR Y +PE +     + +S+++S G  L E+  GR  I
Sbjct: 162 SFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPI 203

>pdb|3ORN|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In Complex With Ch4987655 And Mgamp-Pnp Length = 307

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTD 128
           K++  ++  L YL       I+ R+ K  NIL N     K  DF +S  + +       +
Sbjct: 108 KVSIAVIKGLTYLRE--KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS----MAN 161
Query: 129 RVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHI 170
             +GTR Y +PE +     + +S+++S G  L E+  GR  I
Sbjct: 162 SFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPI 203

>pdb|3SLS|A Chain A, Crystal Structure Of Human Mek-1 Kinase In Complex With Ucb1353770 And Amppnp Length = 304

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTD 128
           K++  ++  L YL       I+ R+ K  NIL N     K  DF +S  + +       +
Sbjct: 127 KVSIAVIKGLTYLRE--KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS----MAN 180
Query: 129 RVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
             +GTR Y +PE +     + +S+++S G  L E+  GR
Sbjct: 181 SFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGR 219

>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine Inhibitor 13 Length = 309

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 70/148 (47%), Gaps = 13/148 (8%)
Query: 27  SHNHILKRIGCCLQTP-IPILVFQSVEYGTLRDCIFGAPL-PRLK----IASDIVNSLAY 80
           SH ++L  +G CL++   P++V   +++G LR+ I      P +K        +   + Y
Sbjct: 88  SHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKY 147
Query: 81  LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTR---GYS 137
           L     +  V R+   +N + +E+   K  DF L+  + + E +   ++  G +    + 
Sbjct: 148 LA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKT-GAKLPVKWM 203
Query: 138 APEYISICVLNEKSNVFSFGAFLFELLA 165
           A E +       KS+V+SFG  L+EL+ 
Sbjct: 204 ALESLQTQKFTTKSDVWSFGVLLWELMT 231

>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 70/166 (42%), Gaps = 27/166 (16%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI---------------------FGA 63
           Q++H H++K  G C Q    +L+ +  +YG+LR  +                        
Sbjct: 82  QVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDH 141
Query: 64  PLPRLKIASDIVNSLAY-----LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISI 118
           P  R     D++ S A+     + +     +V R+   +NIL  E    K  DF LS  +
Sbjct: 142 PDERALTMGDLI-SFAWQISQGMQYLAEMKLVHRDLAARNILVAEGRKMKISDFGLSRDV 200
Query: 119 PEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELL 164
            E ++ +   +      + A E +   +   +S+V+SFG  L+E++
Sbjct: 201 YEEDSXVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIV 246

>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point Mutations (K299r, T423e) Length = 297

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 4/122 (3%)
Query: 46  LVFQSVEYGTLRDCIFGAPLPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEEN 105
           +V + +  G+L D +    +   +IA+     L  L F     ++ R+ K+ NIL   + 
Sbjct: 94  VVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDG 153
Query: 106 VAKWFDFLLSISI-PEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELL 164
             K  DF     I PE         ++GT  + APE ++      K +++S G    E++
Sbjct: 154 SVKLTDFGFCAQITPEQSKR---SEMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMI 210
Query: 165 AG 166
            G
Sbjct: 211 EG 212

>pdb|3MBL|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgadp Length = 328

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTD 128
           K++  ++  L YL       I+ R+ K  NIL N     K  DF +S  + +       +
Sbjct: 108 KVSIAVIKGLTYLRE--KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS----MAN 161
Query: 129 RVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
             +GTR Y +PE +     + +S+++S G  L E+  GR
Sbjct: 162 SFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGR 200

>pdb|3DV3|A Chain A, Mek1 With Pf-04622664 Bound Length = 322

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTD 128
           K++  ++  L YL       I+ R+ K  NIL N     K  DF +S  + +       +
Sbjct: 108 KVSIAVIKGLTYLRE--KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS----MAN 161
Query: 129 RVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
             +GTR Y +PE +     + +S+++S G  L E+  GR
Sbjct: 162 SFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGR 200

>pdb|3EQP|B Chain B, Crystal Structure Of Ack1 With Compound T95 Length = 276

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 92/232 (39%), Gaps = 35/232 (15%)
Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI-------FGAPLPRLK 69
           I  +     + H ++++  G  L  P+  +V +    G+L D +           L R  
Sbjct: 59  IREVNAMHSLDHRNLIRLYGVVLTPPMK-MVTELAPLGSLLDRLRKHQGHFLLGTLSR-- 115
Query: 70  IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH-ITTD 128
            A  +   + YL     +  + R+   +N+L    ++ K  DF L  ++P+ + H +  +
Sbjct: 116 YAVQVAEGMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQE 172
Query: 129 RVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYL 188
                  + APE +     +  S+ + FG  L+E+       W         G   ++ L
Sbjct: 173 HRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPW--------IGLNGSQIL 224
Query: 189 KNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV 240
                DK    +P P   +D P     Q ++    + ++C  + PEDRPT V
Sbjct: 225 HKI--DKEGERLPRP---EDCP-----QDIY---NVMVQCWAHKPEDRPTFV 263

>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Complexed With The Inhibitor Pp1 Length = 314

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 70/166 (42%), Gaps = 27/166 (16%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI---------------------FGA 63
           Q++H H++K  G C Q    +L+ +  +YG+LR  +                        
Sbjct: 82  QVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDH 141
Query: 64  PLPRLKIASDIVNSLAY-----LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISI 118
           P  R     D++ S A+     + +     +V R+   +NIL  E    K  DF LS  +
Sbjct: 142 PDERALTMGDLI-SFAWQISQGMQYLAEMSLVHRDLAARNILVAEGRKMKISDFGLSRDV 200
Query: 119 PEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELL 164
            E ++ +   +      + A E +   +   +S+V+SFG  L+E++
Sbjct: 201 YEEDSXVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIV 246

>pdb|1U46|A Chain A, Crystal Structure Of The Unphosphorylated Kinase Domain Of The Tyrosine Kinase Ack1 Length = 291

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 92/232 (39%), Gaps = 35/232 (15%)
Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI-------FGAPLPRLK 69
           I  +     + H ++++  G  L  P+  +V +    G+L D +           L R  
Sbjct: 69  IREVNAMHSLDHRNLIRLYGVVLTPPMK-MVTELAPLGSLLDRLRKHQGHFLLGTLSR-- 125
Query: 70  IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH-ITTD 128
            A  +   + YL     +  + R+   +N+L    ++ K  DF L  ++P+ + H +  +
Sbjct: 126 YAVQVAEGMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQE 182
Query: 129 RVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYL 188
                  + APE +     +  S+ + FG  L+E+       W         G   ++ L
Sbjct: 183 HRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPW--------IGLNGSQIL 234
Query: 189 KNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV 240
                DK    +P P   +D P     Q ++    + ++C  + PEDRPT V
Sbjct: 235 HKI--DKEGERLPRP---EDCP-----QDIY---NVMVQCWAHKPEDRPTFV 273

>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor. Length = 310

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 70/148 (47%), Gaps = 13/148 (8%)
Query: 27  SHNHILKRIGCCLQTP-IPILVFQSVEYGTLRDCIFGAPL-PRLK----IASDIVNSLAY 80
           SH ++L  +G CL++   P++V   +++G LR+ I      P +K        +   + Y
Sbjct: 89  SHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKY 148
Query: 81  LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTR---GYS 137
           L     +  V R+   +N + +E+   K  DF L+  + + E +   ++  G +    + 
Sbjct: 149 LA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKT-GAKLPVKWM 204
Query: 138 APEYISICVLNEKSNVFSFGAFLFELLA 165
           A E +       KS+V+SFG  L+EL+ 
Sbjct: 205 ALESLQTQKFTTKSDVWSFGVLLWELMT 232

>pdb|1VR2|A Chain A, Human Vascular Endothelial Growth Factor Receptor 2 (Kdr) Kinase Domain Length = 316

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 42/85 (49%)
Query: 81  LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPE 140
           + F   R  + R+   +NIL +E+NV K  DF L+  I +    +          + APE
Sbjct: 161 MEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDXVRKGDARLPLKWMAPE 220
Query: 141 YISICVLNEKSNVFSFGAFLFELLA 165
            I   V   +S+V+SFG  L+E+ +
Sbjct: 221 TIFDRVYTIQSDVWSFGVLLWEIFS 245

>pdb|1GJO|A Chain A, The Fgfr2 Tyrosine Kinase Domain Length = 316

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 63/154 (40%), Gaps = 17/154 (11%)
Query: 27  SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDI---------VNS 77
            H +I+  +G C Q     ++ +    G LR+ +     P ++ + DI            
Sbjct: 91  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKD 150
Query: 78  LAYLHFGFPRPI--------VLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR 129
           L    +   R +        + R+   +N+L  E NV K  DF L+  I   + +  T  
Sbjct: 151 LVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTN 210
Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL 163
                 + APE +   V   +S+V+SFG  ++E+
Sbjct: 211 GRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEI 244

>pdb|4EWH|B Chain B, Co-Crystal Structure Of Ack1 With Inhibitor Length = 275

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 92/232 (39%), Gaps = 35/232 (15%)
Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI-------FGAPLPRLK 69
           I  +     + H ++++  G  L  P+  +V +    G+L D +           L R  
Sbjct: 59  IREVNAMHSLDHRNLIRLYGVVLTPPMK-MVTELAPLGSLLDRLRKHQGHFLLGTLSR-- 115
Query: 70  IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH-ITTD 128
            A  +   + YL     +  + R+   +N+L    ++ K  DF L  ++P+ + H +  +
Sbjct: 116 YAVQVAEGMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHXVMQE 172
Query: 129 RVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYL 188
                  + APE +     +  S+ + FG  L+E+       W         G   ++ L
Sbjct: 173 HRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPW--------IGLNGSQIL 224
Query: 189 KNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV 240
                DK    +P P   +D P     Q ++    + ++C  + PEDRPT V
Sbjct: 225 HKI--DKEGERLPRP---EDCP-----QDIY---NVMVQCWAHKPEDRPTFV 263

>pdb|2PVY|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K659n Mutation Responsible For An Unclassified Craniosynostosis Syndrome. Length = 324

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 63/154 (40%), Gaps = 17/154 (11%)
Query: 27  SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDI---------VNS 77
            H +I+  +G C Q     ++ +    G LR+ +     P ++ + DI            
Sbjct: 99  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKD 158
Query: 78  LAYLHFGFPRPI--------VLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR 129
           L    +   R +        + R+   +N+L  E NV K  DF L+  I   + +  T  
Sbjct: 159 LVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKNTTN 218
Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL 163
                 + APE +   V   +S+V+SFG  ++E+
Sbjct: 219 GRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEI 252

>pdb|2PZP|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K526e Mutation Responsible For Crouzon Syndrome Length = 324

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 63/154 (40%), Gaps = 17/154 (11%)
Query: 27  SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDI---------VNS 77
            H +I+  +G C Q     ++ +    G LR+ +     P ++ + DI            
Sbjct: 99  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKD 158
Query: 78  LAYLHFGFPRPI--------VLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR 129
           L    +   R +        + R+   +N+L  E NV K  DF L+  I   + +  T  
Sbjct: 159 LVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTN 218
Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL 163
                 + APE +   V   +S+V+SFG  ++E+
Sbjct: 219 GRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEI 252

>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor Length = 298

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 70/148 (47%), Gaps = 13/148 (8%)
Query: 27  SHNHILKRIGCCLQTP-IPILVFQSVEYGTLRDCIFGAPL-PRLK----IASDIVNSLAY 80
           SH ++L  +G CL++   P++V   +++G LR+ I      P +K        +   + Y
Sbjct: 84  SHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKY 143
Query: 81  LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTR---GYS 137
           L     +  V R+   +N + +E+   K  DF L+  + + E +   ++  G +    + 
Sbjct: 144 LA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKT-GAKLPVKWM 199
Query: 138 APEYISICVLNEKSNVFSFGAFLFELLA 165
           A E +       KS+V+SFG  L+EL+ 
Sbjct: 200 ALESLQTQKFTTKSDVWSFGVLLWELMT 227

>pdb|3RI1|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase In Complex With Arq 069 Length = 313

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 63/154 (40%), Gaps = 17/154 (11%)
Query: 27  SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDI---------VNS 77
            H +I+  +G C Q     ++ +    G LR+ +     P ++ + DI            
Sbjct: 88  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKD 147
Query: 78  LAYLHFGFPRPI--------VLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR 129
           L    +   R +        + R+   +N+L  E NV K  DF L+  I   + +  T  
Sbjct: 148 LVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTN 207
Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL 163
                 + APE +   V   +S+V+SFG  ++E+
Sbjct: 208 GRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEI 241

>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880 (Gsk1 Length = 302

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 70/148 (47%), Gaps = 13/148 (8%)
Query: 27  SHNHILKRIGCCLQTP-IPILVFQSVEYGTLRDCIFGAPL-PRLK----IASDIVNSLAY 80
           SH ++L  +G CL++   P++V   +++G LR+ I      P +K        +   + Y
Sbjct: 87  SHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKY 146
Query: 81  LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTR---GYS 137
           L     +  V R+   +N + +E+   K  DF L+  + + E +   ++  G +    + 
Sbjct: 147 LA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKT-GAKLPVKWM 202
Query: 138 APEYISICVLNEKSNVFSFGAFLFELLA 165
           A E +       KS+V+SFG  L+EL+ 
Sbjct: 203 ALESLQTQKFTTKSDVWSFGVLLWELMT 230

>pdb|3B2T|A Chain A, Structure Of Phosphotransferase Length = 311

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 63/154 (40%), Gaps = 17/154 (11%)
Query: 27  SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDI---------VNS 77
            H +I+  +G C Q     ++ +    G LR+ +     P ++ + DI            
Sbjct: 86  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKD 145
Query: 78  LAYLHFGFPRPI--------VLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR 129
           L    +   R +        + R+   +N+L  E NV K  DF L+  I   + +  T  
Sbjct: 146 LVSCTYQLARGMEYLASQKCIHRDLTARNVLVTENNVMKIADFGLARDINNIDYYKKTTN 205
Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL 163
                 + APE +   V   +S+V+SFG  ++E+
Sbjct: 206 GRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEI 239

>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain Of C-Met Length = 306

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 70/148 (47%), Gaps = 13/148 (8%)
Query: 27  SHNHILKRIGCCLQTP-IPILVFQSVEYGTLRDCIFGAPL-PRLK----IASDIVNSLAY 80
           SH ++L  +G CL++   P++V   +++G LR+ I      P +K        +   + Y
Sbjct: 86  SHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKY 145
Query: 81  LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTR---GYS 137
           L     +  V R+   +N + +E+   K  DF L+  + + E +   ++  G +    + 
Sbjct: 146 LA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKT-GAKLPVKWM 201
Query: 138 APEYISICVLNEKSNVFSFGAFLFELLA 165
           A E +       KS+V+SFG  L+EL+ 
Sbjct: 202 ALESLQTQKFTTKSDVWSFGVLLWELMT 229

>pdb|1U54|A Chain A, Crystal Structures Of The Phosphorylated And Unphosphorylated Kinase Domains Of The Cdc42-Associated Tyrosine Kinase Ack1 Bound To Amp-Pcp Length = 291

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 92/232 (39%), Gaps = 35/232 (15%)
Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI-------FGAPLPRLK 69
           I  +     + H ++++  G  L  P+  +V +    G+L D +           L R  
Sbjct: 69  IREVNAMHSLDHRNLIRLYGVVLTPPMK-MVTELAPLGSLLDRLRKHQGHFLLGTLSR-- 125
Query: 70  IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH-ITTD 128
            A  +   + YL     +  + R+   +N+L    ++ K  DF L  ++P+ + H +  +
Sbjct: 126 YAVQVAEGMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHXVMQE 182
Query: 129 RVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYL 188
                  + APE +     +  S+ + FG  L+E+       W         G   ++ L
Sbjct: 183 HRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPW--------IGLNGSQIL 234
Query: 189 KNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV 240
                DK    +P P   +D P     Q ++    + ++C  + PEDRPT V
Sbjct: 235 HKI--DKEGERLPRP---EDCP-----QDIY---NVMVQCWAHKPEDRPTFV 273

>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r In Complex With Dasatinib Length = 265

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/104 (24%), Positives = 50/104 (48%), Gaps = 16/104 (15%)
Query: 68  LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITT 127
           L++  D+  ++ YL     +  + R+   +N L N++ V K  DF LS        ++  
Sbjct: 108 LEMCKDVCEAMEYLE---SKQFLHRDLAARNCLVNDQGVVKVSDFGLS-------RYVLD 157
Query: 128 DRVIGTRG------YSAPEYISICVLNEKSNVFSFGAFLFELLA 165
           D    +RG      +S PE +     + KS++++FG  ++E+ +
Sbjct: 158 DEYTSSRGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYS 201

>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The Dually-Phosphorylated, Activated State Length = 308

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 70/148 (47%), Gaps = 13/148 (8%)
Query: 27  SHNHILKRIGCCLQTP-IPILVFQSVEYGTLRDCIFGAPL-PRLK----IASDIVNSLAY 80
           SH ++L  +G CL++   P++V   +++G LR+ I      P +K        +   + Y
Sbjct: 89  SHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKY 148
Query: 81  LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTR---GYS 137
           L     +  V R+   +N + +E+   K  DF L+  + + E +   ++  G +    + 
Sbjct: 149 LA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKT-GAKLPVKWM 204
Query: 138 APEYISICVLNEKSNVFSFGAFLFELLA 165
           A E +       KS+V+SFG  L+EL+ 
Sbjct: 205 ALESLQTQKFTTKSDVWSFGVLLWELMT 232

>pdb|2PZ5|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic N549t Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 63/154 (40%), Gaps = 17/154 (11%)
Query: 27  SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDI---------VNS 77
            H +I+  +G C Q     ++ +    G LR+ +     P ++ + DI            
Sbjct: 99  KHKNIITLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKD 158
Query: 78  LAYLHFGFPRPI--------VLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR 129
           L    +   R +        + R+   +N+L  E NV K  DF L+  I   + +  T  
Sbjct: 159 LVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTN 218
Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL 163
                 + APE +   V   +S+V+SFG  ++E+
Sbjct: 219 GRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEI 252

>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium Complex Lambda-Fl172 Length = 297

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 46  LVFQSVEYGTLRDCIFGAPLPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEEN 105
           +V + +  G+L D +    +   +IA+     L  L F     ++ R+ K+ NIL   + 
Sbjct: 94  VVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDG 153
Query: 106 VAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA 165
             K  DF     I   ++  +   ++GT  + APE ++      K +++S G    E++ 
Sbjct: 154 SVKLTDFGFCAQITPEQSKRSX--MVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIE 211
Query: 166 G 166
           G
Sbjct: 212 G 212

>pdb|1OVE|A Chain A, The Structure Of P38 Alpha In Complex With A Dihydroquinolinone Length = 366

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 15/98 (15%)
Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIG- 132
           I+  L Y+H      I+ R+ K  N+  NE++  K  DF        G    T D + G 
Sbjct: 140 ILRGLKYIHSA---DIIHRDLKPSNLAVNEDSELKILDF--------GLARHTDDEMTGY 188
Query: 133 --TRGYSAPE-YISICVLNEKSNVFSFGAFLFELLAGR 167
             TR Y APE  ++    N+  +++S G  + ELL GR
Sbjct: 189 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 226

>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And Inactive Conformations Suggests A Mechanism Of Activation For Tec Family Kinases Length = 283

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 68  LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITT 127
           L++  D+  ++ YL     +  + R+   +N L N++ V K  DF LS  + + E   + 
Sbjct: 123 LEMCKDVCEAMEYLE---SKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEETSSV 179
Query: 128 DRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA 165
                 R +S PE +     + KS++++FG  ++E+ +
Sbjct: 180 GSKFPVR-WSPPEVLMYSKFSSKSDIWAFGVLMWEIYS 216

>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor Length = 292

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 70/148 (47%), Gaps = 13/148 (8%)
Query: 27  SHNHILKRIGCCLQTP-IPILVFQSVEYGTLRDCIFGAPL-PRLK----IASDIVNSLAY 80
           SH ++L  +G CL++   P++V   +++G LR+ I      P +K        +   + Y
Sbjct: 81  SHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKY 140
Query: 81  LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTR---GYS 137
           L     +  V R+   +N + +E+   K  DF L+  + + E +   ++  G +    + 
Sbjct: 141 LA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKT-GAKLPVKWM 196
Query: 138 APEYISICVLNEKSNVFSFGAFLFELLA 165
           A E +       KS+V+SFG  L+EL+ 
Sbjct: 197 ALESLQTQKFTTKSDVWSFGVLLWELMT 224

>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 46  LVFQSVEYGTLRDCIFGAPLPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEEN 105
           +V + +  G+L D +    +   +IA+     L  L F     ++ R+ K+ NIL   + 
Sbjct: 95  VVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDG 154
Query: 106 VAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA 165
             K  DF     I   ++  +   ++GT  + APE ++      K +++S G    E++ 
Sbjct: 155 SVKLTDFGFCAQITPEQSKRSX--MVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIE 212
Query: 166 G 166
           G
Sbjct: 213 G 213

>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase Length = 318

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 70/148 (47%), Gaps = 13/148 (8%)
Query: 27  SHNHILKRIGCCLQTP-IPILVFQSVEYGTLRDCIFGAPL-PRLK----IASDIVNSLAY 80
           SH ++L  +G CL++   P++V   +++G LR+ I      P +K        +   + Y
Sbjct: 107 SHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKY 166
Query: 81  LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTR---GYS 137
           L     +  V R+   +N + +E+   K  DF L+  + + E +   ++  G +    + 
Sbjct: 167 LA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKT-GAKLPVKWM 222
Query: 138 APEYISICVLNEKSNVFSFGAFLFELLA 165
           A E +       KS+V+SFG  L+EL+ 
Sbjct: 223 ALESLQTQKFTTKSDVWSFGVLLWELMT 250

>pdb|4HZS|A Chain A, Crystal Structure Of Ack1 Kinase Domain With C-terminal Sh3 Domain Length = 341

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 92/232 (39%), Gaps = 35/232 (15%)
Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI-------FGAPLPRLK 69
           I  +     + H ++++  G  L  P+  +V +    G+L D +           L R  
Sbjct: 63  IREVNAMHSLDHRNLIRLYGVVLTPPMK-MVTELAPLGSLLDRLRKHQGHFLLGTLSR-- 119
Query: 70  IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH-ITTD 128
            A  +   + YL     +  + R+   +N+L    ++ K  DF L  ++P+ + H +  +
Sbjct: 120 YAVQVAEGMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQE 176
Query: 129 RVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYL 188
                  + APE +     +  S+ + FG  L+E+       W         G   ++ L
Sbjct: 177 HRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPW--------IGLNGSQIL 228
Query: 189 KNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV 240
                DK    +P P   +D P     Q ++    + ++C  + PEDRPT V
Sbjct: 229 HKI--DKEGERLPRP---EDCP-----QDIY---NVMVQCWAHKPEDRPTFV 267

>pdb|2Y8O|A Chain A, Crystal Structure Of Human P38alpha Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 15/98 (15%)
Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIG- 132
           I+  L Y+H      I+ R+ K  N+  NE++  K  DF        G    T D + G 
Sbjct: 136 ILRGLKYIHSA---DIIHRDLKPSNLAVNEDSELKILDF--------GLARHTDDEMTGY 184
Query: 133 --TRGYSAPE-YISICVLNEKSNVFSFGAFLFELLAGR 167
             TR Y APE  ++    N+  +++S G  + ELL GR
Sbjct: 185 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 222

>pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based Allosteric Inhibitor Xl518 (Gdc-0973), Or Related Analogs. Length = 301

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTD 128
           K++  ++  L YL       I+ R+ K  NIL N     K  DF +S  + +       +
Sbjct: 111 KVSIAVIKGLTYLRE--KHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDE----MAN 164
Query: 129 RVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
             +GTR Y +PE +     + +S+++S G  L E+  GR
Sbjct: 165 EFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGR 203

>pdb|2BDW|A Chain A, Crystal Structure Of The Auto-Inhibited Kinase Domain Of CalciumCALMODULIN ACTIVATED KINASE II Length = 362

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 69/161 (42%), Gaps = 15/161 (9%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIAS----DIVNSLAY 80
           ++ H +I++      +     LVF  V  G L + I          AS     I+ S+AY
Sbjct: 84  KLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAREFYSEADASHCIQQILESIAY 143
Query: 81  LHFGFPRPIVLRNFKTQNILFNEEN---VAKWFDFLLSISIPEGETHITTDRVIGTRGYS 137
            H      IV RN K +N+L   +      K  DF L+I + + E         GT GY 
Sbjct: 144 CH---SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAW---HGFAGTPGYL 197
Query: 138 APEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTH 178
           +PE +     ++  ++++ G  L+ LL G    WD  +D H
Sbjct: 198 SPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWD--EDQH 236

>pdb|1I44|A Chain A, Crystallographic Studies Of An Activation Loop Mutant Of The Insulin Receptor Tyrosine Kinase Length = 306

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/163 (20%), Positives = 74/163 (45%), Gaps = 17/163 (10%)
Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIF----------GAPLP 66
           +N  +     + +H+++ +G   +    ++V + + +G L+  +           G P P
Sbjct: 68  LNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPP 127
Query: 67  RLK----IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGE 122
            L+    +A++I + +AYL+    +  V R+   +N +   +   K  DF ++  I E  
Sbjct: 128 TLQEMIQMAAEIADGMAYLN---AKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETA 184
Query: 123 THITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA 165
            +    + +    + APE +   V    S+++SFG  L+E+ +
Sbjct: 185 YYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITS 227

>pdb|2PVF|A Chain A, Crystal Structure Of Tyrosine Phosphorylated Activated Fgf Receptor 2 (Fgfr2) Kinase Domain In Complex With Atp Analog And Substrate Peptide Length = 334

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 62/154 (40%), Gaps = 17/154 (11%)
Query: 27  SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDI---------VNS 77
            H +I+  +G C Q     ++ +    G LR+ +     P ++ + DI            
Sbjct: 99  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEXSYDINRVPEEQMTFKD 158
Query: 78  LAYLHFGFPRPI--------VLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR 129
           L    +   R +        + R+   +N+L  E NV K  DF L+  I   +    T  
Sbjct: 159 LVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDXXKKTTN 218
Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL 163
                 + APE +   V   +S+V+SFG  ++E+
Sbjct: 219 GRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEI 252

>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In Complex With An Mk-2461 Analog With Specificity For The Activated Receptor Length = 307

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 69/148 (46%), Gaps = 13/148 (8%)
Query: 27  SHNHILKRIGCCLQTP-IPILVFQSVEYGTLRDCIFGAPL-PRLK----IASDIVNSLAY 80
           SH ++L  +G CL++   P++V   +++G LR+ I      P +K        +   + Y
Sbjct: 88  SHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKY 147
Query: 81  LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGE---THITTDRVIGTRGYS 137
           L     +  V R+   +N + +E+   K  DF L+  + + E    H  T   +  + + 
Sbjct: 148 LA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEXXSVHNKTGAKLPVK-WM 203
Query: 138 APEYISICVLNEKSNVFSFGAFLFELLA 165
           A E +       KS+V+SFG  L+EL+ 
Sbjct: 204 ALESLQTQKFTTKSDVWSFGVLLWELMT 231

>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor Length = 319

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 70/148 (47%), Gaps = 13/148 (8%)
Query: 27  SHNHILKRIGCCLQTP-IPILVFQSVEYGTLRDCIFGAPL-PRLK----IASDIVNSLAY 80
           SH ++L  +G CL++   P++V   +++G LR+ I      P +K        +   + Y
Sbjct: 108 SHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKY 167
Query: 81  LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTR---GYS 137
           L     +  V R+   +N + +E+   K  DF L+  + + E +   ++  G +    + 
Sbjct: 168 LA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKT-GAKLPVKWM 223
Query: 138 APEYISICVLNEKSNVFSFGAFLFELLA 165
           A E +       KS+V+SFG  L+EL+ 
Sbjct: 224 ALESLQTQKFTTKSDVWSFGVLLWELMT 251

>pdb|2PWL|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic N549h Mutation Responsible For Crouzon Syndrome. Length = 324

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 63/154 (40%), Gaps = 17/154 (11%)
Query: 27  SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDI---------VNS 77
            H +I+  +G C Q     ++ +    G LR+ +     P ++ + DI            
Sbjct: 99  KHKNIIHLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKD 158
Query: 78  LAYLHFGFPRPI--------VLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR 129
           L    +   R +        + R+   +N+L  E NV K  DF L+  I   + +  T  
Sbjct: 159 LVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTN 218
Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL 163
                 + APE +   V   +S+V+SFG  ++E+
Sbjct: 219 GRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEI 252

>pdb|3CLY|A Chain A, Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase Domains Trapped In Trans-Phosphorylation Reaction Length = 334

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 62/154 (40%), Gaps = 17/154 (11%)
Query: 27  SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDI---------VNS 77
            H +I+  +G C Q     ++ +    G LR+ +     P ++ + DI            
Sbjct: 99  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKD 158
Query: 78  LAYLHFGFPRPI--------VLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR 129
           L    +   R +        + R+   +N+L  E NV K  DF L+  I   +    T  
Sbjct: 159 LVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDXXKKTTN 218
Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL 163
                 + APE +   V   +S+V+SFG  ++E+
Sbjct: 219 GRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEI 252

>pdb|3OHT|A Chain A, Crystal Structure Of Salmo Salar P38alpha Length = 389

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 64/155 (41%), Gaps = 27/155 (17%)
Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIG- 132
           I+  L Y+H      I+ R+ K  N+  NE+   K  DF        G    T D + G 
Sbjct: 163 ILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDF--------GLARHTDDEMTGY 211
Query: 133 --TRGYSAPE-YISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLK 189
             TR Y APE  ++    N   +++S G  + ELL GR     L   T DH     + + 
Sbjct: 212 VATRWYRAPEIMLNWMHYNMTVDIWSVGCIMAELLTGRT----LFPGT-DHINQLQQIM- 265
Query: 190 NYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQL 224
                 R TG P   ++  +P  E    +++  Q+
Sbjct: 266 ------RLTGTPPASVISRMPSHEARNYINSLPQM 294

>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form Length = 279

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 6/106 (5%)
Query: 65  LPRL-KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGET 123
           LP+L   ++ I   +AY+     +  + R+ +  N+L +E  + K  DF L+  I + E 
Sbjct: 108 LPKLIDFSAQIAEGMAYIE---RKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEY 164
Query: 124 HITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA-GRI 168
                     + ++APE I+      KSNV+SFG  L+E++  G+I
Sbjct: 165 TAREGAKFPIK-WTAPEAINFGCFTIKSNVWSFGILLYEIVTYGKI 209

>pdb|2PSQ|A Chain A, Crystal Structure Of Unphosphorylated Unactivated Wild Type Fgf Receptor 2 (Fgfr2) Kinase Domain Length = 370

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 63/154 (40%), Gaps = 17/154 (11%)
Query: 27  SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDI---------VNS 77
            H +I+  +G C Q     ++ +    G LR+ +     P ++ + DI            
Sbjct: 145 KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKD 204
Query: 78  LAYLHFGFPRPI--------VLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR 129
           L    +   R +        + R+   +N+L  E NV K  DF L+  I   + +  T  
Sbjct: 205 LVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTN 264
Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL 163
                 + APE +   V   +S+V+SFG  ++E+
Sbjct: 265 GRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEI 298

>pdb|2C30|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 6 Length = 321

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 64/128 (50%), Gaps = 16/128 (12%)
Query: 46  LVFQSVEYGTLRDCIFGAPLPRLKIAS---DIVNSLAYLHFGFPRPIVLRNFKTQNILFN 102
           ++ + ++ G L D +    L   +IA+    ++ +LAYLH    + ++ R+ K+ +IL  
Sbjct: 119 VLMEFLQGGALTDIVSQVRLNEEQIATVCEAVLQALAYLH---AQGVIHRDIKSDSILLT 175
Query: 103 EENVAKWFDF----LLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGA 158
            +   K  DF     +S  +P+ +       ++GT  + APE IS  +   + +++S G 
Sbjct: 176 LDGRVKLSDFGFCAQISKDVPKRKX------LVGTPYWMAPEVISRSLYATEVDIWSLGI 229
Query: 159 FLFELLAG 166
            + E++ G
Sbjct: 230 MVIEMVDG 237

>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With 2-Isopropyl-7- (4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3- Ylamino)-2h- Phthalazin-1-One Length = 274

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 68  LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITT 127
           L++  D+  ++ YL     +  + R+   +N L N++ V K  DF LS  + + E   + 
Sbjct: 114 LEMCKDVCEAMEYLE---SKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSV 170
Query: 128 DRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA 165
                 R +S PE +     + KS++++FG  ++E+ +
Sbjct: 171 GSKFPVR-WSPPEVLMYSKFSSKSDIWAFGVLMWEIYS 207

>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine Kinase Bound To A Pyrrolopyrimidine-Containing Compound Length = 283

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 68  LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITT 127
           L++  D+  ++ YL     +  + R+   +N L N++ V K  DF LS  + + E   + 
Sbjct: 123 LEMCKDVCEAMEYLE---SKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSV 179
Query: 128 DRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA 165
                 R +S PE +     + KS++++FG  ++E+ +
Sbjct: 180 GSKFPVR-WSPPEVLMYSKFSSKSDIWAFGVLMWEIYS 216

>pdb|3ZH8|A Chain A, A Novel Small Molecule Apkc Inhibitor Length = 349

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 68/152 (44%), Gaps = 18/152 (11%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKI--------ASDIVN 76
           Q S++  L  +  C QT   +  F  +EY    D +F     R K+        +++I  
Sbjct: 61  QASNHPFLVGLHSCFQTESRL--FFVIEYVNGGDLMFHMQRQR-KLPEEHARFYSAEISL 117
Query: 77  SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDF-LLSISIPEGETHITTDRVIGTRG 135
           +L YLH    R I+ R+ K  N+L + E   K  D+ +    +  G+T   T    GT  
Sbjct: 118 ALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDT---TSXFCGTPN 171
Query: 136 YSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           Y APE +         + ++ G  +FE++AGR
Sbjct: 172 YIAPEILRGEDYGFSVDWWALGVLMFEMMAGR 203

>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a Length = 282

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           +++ N+L+Y H    + ++ R+ K +N+L       K  +F  S+  P   +  TT  + 
Sbjct: 117 TELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIANFGWSVHAPS--SRRTT--LC 169
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           GT  Y  PE I   + +EK +++S G   +E L G+
Sbjct: 170 GTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 205

>pdb|3A8W|A Chain A, Crystal Structure Of Pkciota Kinase Domain Length = 345

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 16/151 (10%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIF----GAPLPRLKI---ASDIVNS 77
           Q S++  L  +  C QT   +  F  +EY    D +F       LP       +++I  +
Sbjct: 65  QASNHPFLVGLHSCFQTESRL--FFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLA 122
Query: 78  LAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDF-LLSISIPEGETHITTDRVIGTRGY 136
           L YLH    R I+ R+ K  N+L + E   K  D+ +    +  G+T   T    GT  Y
Sbjct: 123 LNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDT---TSXFCGTPNY 176
Query: 137 SAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
            APE +         + ++ G  +FE++AGR
Sbjct: 177 IAPEILRGEDYGFSVDWWALGVLMFEMMAGR 207

>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A Diaminopyrimidine Length = 281

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           +++ N+L+Y H    + ++ R+ K +N+L       K  DF  S   P   +  TT  + 
Sbjct: 116 TELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSCHAPS--SRRTT--LS 168
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           GT  Y  PE I   + +EK +++S G   +E L G+
Sbjct: 169 GTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 204

>pdb|3G0E|A Chain A, Kit Kinase Domain In Complex With Sunitinib Length = 336

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 36/74 (48%)
Query: 92  RNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKS 151
           R+   +NIL     + K  DF L+  I     ++          + APE I  CV   +S
Sbjct: 192 RDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFES 251
Query: 152 NVFSFGAFLFELLA 165
           +V+S+G FL+EL +
Sbjct: 252 DVWSYGIFLWELFS 265

>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain Length = 263

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 68  LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITT 127
           L++  D+  ++ YL     +  + R+   +N L N++ V K  DF LS  + + E   + 
Sbjct: 103 LEMCKDVCEAMEYLE---SKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSV 159
Query: 128 DRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA 165
                 R +S PE +     + KS++++FG  ++E+ +
Sbjct: 160 GSKFPVR-WSPPEVLMYSKFSSKSDIWAFGVLMWEIYS 196

>pdb|3RZF|A Chain A, Crystal Structure Of Inhibitor Of Kappab Kinase Beta (I4122) Length = 677

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 16/134 (11%)
Query: 43  IPILVFQSVEYGTLR-------DCIFGAPLPRLKIASDIVNSLAYLHFGFPRPIVLRNFK 95
           +P+L  +  E G LR       +C      P   + SDI ++L YLH      I+ R+ K
Sbjct: 93  LPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHENR---IIHRDLK 149
Query: 96  TQNILFN---EENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSN 152
            +NI+     +  + K  D   +  + +GE  + T+  +GT  Y APE +         +
Sbjct: 150 PENIVLQPGPQRLIHKIIDLGYAKELDQGE--LCTE-FVGTLQYLAPELLEQKKYTVTVD 206
Query: 153 VFSFGAFLFELLAG 166
            +SFG   FE + G
Sbjct: 207 YWSFGTLAFECITG 220

>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain Length = 267

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 68  LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITT 127
           L++  D+  ++ YL     +  + R+   +N L N++ V K  DF LS  + + E   + 
Sbjct: 107 LEMCKDVCEAMEYLE---SKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSV 163
Query: 128 DRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA 165
                 R +S PE +     + KS++++FG  ++E+ +
Sbjct: 164 GSKFPVR-WSPPEVLMYSKFSSKSDIWAFGVLMWEIYS 200

>pdb|3QA8|A Chain A, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta Length = 676

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 16/134 (11%)
Query: 43  IPILVFQSVEYGTLR-------DCIFGAPLPRLKIASDIVNSLAYLHFGFPRPIVLRNFK 95
           +P+L  +  E G LR       +C      P   + SDI ++L YLH      I+ R+ K
Sbjct: 92  LPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHENR---IIHRDLK 148
Query: 96  TQNILFN---EENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSN 152
            +NI+     +  + K  D   +  + +GE  + T+  +GT  Y APE +         +
Sbjct: 149 PENIVLQPGPQRLIHKIIDLGYAKELDQGE--LCTE-FVGTLQYLAPELLEQKKYTVTVD 205
Query: 153 VFSFGAFLFELLAG 166
            +SFG   FE + G
Sbjct: 206 YWSFGTLAFECITG 219

>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex With Inhibitor Cgi1746 Length = 271

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 68  LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITT 127
           L++  D+  ++ YL     +  + R+   +N L N++ V K  DF LS  + + E   + 
Sbjct: 108 LEMCKDVCEAMEYLE---SKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSV 164
Query: 128 DRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA 165
                 R +S PE +     + KS++++FG  ++E+ +
Sbjct: 165 GSKFPVR-WSPPEVLMYSKFSSKSDIWAFGVLMWEIYS 201

>pdb|1T45|A Chain A, Structural Basis For The Autoinhibition And Sti-571 Inhibition Of C- Kit Tyrosine Kinase Length = 331

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 36/74 (48%)
Query: 92  RNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKS 151
           R+   +NIL     + K  DF L+  I     ++          + APE I  CV   +S
Sbjct: 187 RDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFES 246
Query: 152 NVFSFGAFLFELLA 165
           +V+S+G FL+EL +
Sbjct: 247 DVWSYGIFLWELFS 260

>pdb|1T46|A Chain A, Structural Basis For The Autoinhibition And Sti-571 Inhibition Of C-kit Tyrosine Kinase Length = 313

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 36/74 (48%)
Query: 92  RNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKS 151
           R+   +NIL     + K  DF L+  I     ++          + APE I  CV   +S
Sbjct: 169 RDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFES 228
Query: 152 NVFSFGAFLFELLA 165
           +V+S+G FL+EL +
Sbjct: 229 DVWSYGIFLWELFS 242

>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine Inhibitor Length = 272

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           +++ N+L+Y H    + ++ R+ K +N+L       K  +F  S+  P   +  TT  + 
Sbjct: 118 TELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIANFGWSVHAPS--SRRTT--LC 170
Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           GT  Y  PE I   + +EK +++S G   +E L G+
Sbjct: 171 GTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 206

>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human 5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant (T172d) Length = 276

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 80/186 (43%), Gaps = 18/186 (9%)
Query: 14  GSCINNITYAAQMSHNHILKRIGCCLQTPIPI-LVFQSVEYGTLRD--CIFG--APLPRL 68
           G     I       H HI+K +   + TP    +V + V  G L D  C  G    +   
Sbjct: 56  GKIKREIQNLKLFRHPHIIK-LYQVISTPTDFFMVMEYVSGGELFDYICKHGRVEEMEAR 114
Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTD 128
           ++   I++++ Y H      +V R+ K +N+L +    AK  DF LS  + +GE    + 
Sbjct: 115 RLFQQILSAVDYCHRHM---VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRDS- 170
Query: 129 RVIGTRGYSAPEYIS-ICVLNEKSNVFSFGAFLFELLAGRI-----HIWDLLKDTHDHGC 182
              G+  Y+APE IS       + +++S G  L+ LL G +     H+  L K       
Sbjct: 171 --CGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFKKIRGGVF 228
Query: 183 FFNEYL 188
           +  EYL
Sbjct: 229 YIPEYL 234

>pdb|1PKG|A Chain A, Structure Of A C-kit Kinase Product Complex Length = 329

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 36/74 (48%)
Query: 92  RNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKS 151
           R+   +NIL     + K  DF L+  I     ++          + APE I  CV   +S
Sbjct: 185 RDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFES 244
Query: 152 NVFSFGAFLFELLA 165
           +V+S+G FL+EL +
Sbjct: 245 DVWSYGIFLWELFS 258

>pdb|4DC2|A Chain A, Structure Of Pkc In Complex With A Substrate Peptide From Par-3 Length = 396

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 16/151 (10%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIF----GAPLPRLKI---ASDIVNS 77
           Q S++  L  +  C QT   +  F  +EY    D +F       LP       +++I  +
Sbjct: 108 QASNHPFLVGLHSCFQTESRL--FFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLA 165
Query: 78  LAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDF-LLSISIPEGETHITTDRVIGTRGY 136
           L YLH    R I+ R+ K  N+L + E   K  D+ +    +  G+T   T    GT  Y
Sbjct: 166 LNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDT---TSTFCGTPNY 219
Query: 137 SAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
            APE +         + ++ G  +FE++AGR
Sbjct: 220 IAPEILRGEDYGFSVDWWALGVLMFEMMAGR 250

>pdb|1ZRZ|A Chain A, Crystal Structure Of The Catalytic Domain Of Atypical Protein Kinase C-Iota Length = 364

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 68/152 (44%), Gaps = 18/152 (11%)
Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKI--------ASDIVN 76
           Q S++  L  +  C QT   +  F  +EY    D +F     R K+        +++I  
Sbjct: 76  QASNHPFLVGLHSCFQTESRL--FFVIEYVNGGDLMFHMQRQR-KLPEEHARFYSAEISL 132
Query: 77  SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDF-LLSISIPEGETHITTDRVIGTRG 135
           +L YLH    R I+ R+ K  N+L + E   K  D+ +    +  G+T   T    GT  
Sbjct: 133 ALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDT---TSXFCGTPN 186
Query: 136 YSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           Y APE +         + ++ G  +FE++AGR
Sbjct: 187 YIAPEILRGEDYGFSVDWWALGVLMFEMMAGR 218

>pdb|3E92|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biaryl Amide Inhibitor Length = 371

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 15/98 (15%)
Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIG- 132
           I+  L Y+H      I+ R+ K  N+  NE+   K  DF        G    T D + G 
Sbjct: 145 ILRGLKYIHSA---DIIHRDLKPSNLAVNEDXELKILDF--------GLARHTDDEMTGY 193
Query: 133 --TRGYSAPE-YISICVLNEKSNVFSFGAFLFELLAGR 167
             TR Y APE  ++    N+  +++S G  + ELL GR
Sbjct: 194 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 231

>pdb|2BAQ|A Chain A, P38alpha Bound To Ro3201195 Length = 365

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 15/98 (15%)
Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIG- 132
           I+  L Y+H      I+ R+ K  N+  NE+   K  DF        G    T D + G 
Sbjct: 139 ILRGLKYIHSA---DIIHRDLKPSNLAVNEDXELKILDF--------GLARHTDDEMTGY 187
Query: 133 --TRGYSAPE-YISICVLNEKSNVFSFGAFLFELLAGR 167
             TR Y APE  ++    N+  +++S G  + ELL GR
Sbjct: 188 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 225

>pdb|3D83|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl Amide Inhibitor Length = 360

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 15/98 (15%)
Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIG- 132
           I+  L Y+H      I+ R+ K  N+  NE+   K  DF        G    T D + G 
Sbjct: 134 ILRGLKYIHSA---DIIHRDLKPSNLAVNEDXELKILDF--------GLARHTDDEMTGY 182
Query: 133 --TRGYSAPE-YISICVLNEKSNVFSFGAFLFELLAGR 167
             TR Y APE  ++    N+  +++S G  + ELL GR
Sbjct: 183 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 220

>pdb|2BAL|A Chain A, P38alpha Map Kinase Bound To Pyrazoloamine Length = 365

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 15/98 (15%)
Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIG- 132
           I+  L Y+H      I+ R+ K  N+  NE+   K  DF        G    T D + G 
Sbjct: 139 ILRGLKYIHSA---DIIHRDLKPSNLAVNEDXELKILDF--------GLARHTDDEMTGY 187
Query: 133 --TRGYSAPE-YISICVLNEKSNVFSFGAFLFELLAGR 167
             TR Y APE  ++    N+  +++S G  + ELL GR
Sbjct: 188 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 225

>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5 Length = 317

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 63/128 (49%), Gaps = 16/128 (12%)
Query: 46  LVFQSVEYGTLRDCIFGAPLPRLKIAS---DIVNSLAYLHFGFPRPIVLRNFKTQNILFN 102
           +V + +E G L D +    +   +IA+    ++ +L+YLH    + ++ R+ K+ +IL  
Sbjct: 119 VVMEFLEGGALTDIVTHTRMNEEQIATVCLSVLRALSYLH---NQGVIHRDIKSDSILLT 175
Query: 103 EENVAKWFDF----LLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGA 158
            +   K  DF     +S  +P+ +       ++GT  + APE IS      + +++S G 
Sbjct: 176 SDGRIKLSDFGFCAQVSKEVPKRKX------LVGTPYWMAPEVISRLPYGTEVDIWSLGI 229
Query: 159 FLFELLAG 166
            + E++ G
Sbjct: 230 MVIEMIDG 237

>pdb|2PZR|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K641r Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/154 (22%), Positives = 63/154 (40%), Gaps = 17/154 (11%)
Query: 27  SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDI---------VNS 77
            H +I+  +G C Q     ++ +    G LR+ +     P ++ + DI            
Sbjct: 99  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKD 158
Query: 78  LAYLHFGFPRPI--------VLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR 129
           L    +   R +        + R+   +N+L  E NV +  DF L+  I   + +  T  
Sbjct: 159 LVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMRIADFGLARDINNIDYYKKTTN 218
Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL 163
                 + APE +   V   +S+V+SFG  ++E+
Sbjct: 219 GRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEI 252

>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742f Triple Mutant Length = 373

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 94/228 (41%), Gaps = 47/228 (20%)
Query: 24  AQMSHNHILKRIGCCLQTPIPILVFQSVEYGTL------RDCIFGAPLPRLKIASDIVNS 77
            Q  H +I++  G   ++   ++V + +E G+L       D  F   +  + +   I + 
Sbjct: 101 GQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTV-IQLVGMLRGIASG 159
Query: 78  LAYLH-FGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRG- 135
           + YL   GF    V R+   +NIL N   V K  DF LS  + +      T     TRG 
Sbjct: 160 MKYLSDMGF----VHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYT-----TRGG 210
Query: 136 -----YSAPEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLK 189
                +++PE I+       S+V+S+G  L+E+++ G    W++            + +K
Sbjct: 211 KIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSN---------QDVIK 261
Query: 190 NYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRP 237
              E  R   +P P+   D P         A  QL L+C      +RP
Sbjct: 262 AVDEGYR---LPPPM---DCPA--------ALYQLMLDCWQKDRNNRP 295

>pdb|3GCP|A Chain A, Human P38 Map Kinase In Complex With Sb203580 Length = 360

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 15/98 (15%)
Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIG- 132
           I+  L Y+H      I+ R+ K  N+  NE++  K  DF        G    T D + G 
Sbjct: 134 ILRGLKYIHSA---DIIHRDLKPSNLAVNEDSELKILDF--------GLCRHTDDEMTGY 182
Query: 133 --TRGYSAPE-YISICVLNEKSNVFSFGAFLFELLAGR 167
             TR Y APE  ++    N+  +++S G  + ELL GR
Sbjct: 183 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 220

>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex Length = 302

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 90  VLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTR---GYSAPEYISICV 146
           V R+   +NIL N   V K  DF LS  + E  +  T    +G +    ++APE I+   
Sbjct: 140 VHRDLAARNILVNSNLVCKVSDFGLSRFLEENSSDPTETSSLGGKIPIRWTAPEAIAFRK 199
Query: 147 LNEKSNVFSFGAFLFELLA-GRIHIWDL 173
               S+ +S+G  ++E+++ G    WD+
Sbjct: 200 FTSASDAWSYGIVMWEVMSFGERPYWDM 227

>pdb|2Q0B|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic E565a Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 62/154 (40%), Gaps = 17/154 (11%)
Query: 27  SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDI---------VNS 77
            H +I+  +G C Q     ++      G LR+ +     P ++ + DI            
Sbjct: 99  KHKNIINLLGACTQDGPLYVIVAYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKD 158
Query: 78  LAYLHFGFPRPI--------VLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR 129
           L    +   R +        + R+   +N+L  E NV K  DF L+  I   + +  T  
Sbjct: 159 LVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTN 218
Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL 163
                 + APE +   V   +S+V+SFG  ++E+
Sbjct: 219 GRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEI 252

>pdb|3G0F|A Chain A, Kit Kinase Domain Mutant D816h In Complex With Sunitinib Length = 336

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 36/74 (48%)
Query: 92  RNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKS 151
           R+   +NIL     + K  DF L+  I     ++          + APE I  CV   +S
Sbjct: 192 RDLAARNILLTHGRITKICDFGLARHIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFES 251
Query: 152 NVFSFGAFLFELLA 165
           +V+S+G FL+EL +
Sbjct: 252 DVWSYGIFLWELFS 265

>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Dephosphorylated, Amp-Pnp Bound Length = 373

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 94/228 (41%), Gaps = 47/228 (20%)
Query: 24  AQMSHNHILKRIGCCLQTPIPILVFQSVEYGTL------RDCIFGAPLPRLKIASDIVNS 77
            Q  H +I++  G   ++   ++V + +E G+L       D  F   +  + +   I + 
Sbjct: 101 GQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRKHDAQFTV-IQLVGMLRGIASG 159
Query: 78  LAYLH-FGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRG- 135
           + YL   G+    V R+   +NIL N   V K  DF LS  + +      T     TRG 
Sbjct: 160 MKYLSDMGY----VHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYT-----TRGG 210
Query: 136 -----YSAPEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLK 189
                +++PE I+       S+V+S+G  L+E+++ G    W++            + +K
Sbjct: 211 KIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSN---------QDVIK 261
Query: 190 NYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRP 237
              E  R   +P P+   D P         A  QL L+C      +RP
Sbjct: 262 AVDEGYR---LPPPM---DCPA--------ALYQLMLDCWQKDRNNRP 295

>pdb|3GI3|A Chain A, Crystal Structure Of A N-Phenyl-N'-Naphthylurea Analog In Complex With P38 Map Kinase Length = 360

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGT 133
           I+  L Y+H      I+ R+ K  N+  NE+   K  DF L+    +  T       + T
Sbjct: 134 ILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDFYLARHTDDEMTG-----YVAT 185
Query: 134 RGYSAPE-YISICVLNEKSNVFSFGAFLFELLAGR 167
           R Y APE  ++    N+  +++S G  + ELL GR
Sbjct: 186 RWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 220

>pdb|2PY3|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic E565g Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 62/154 (40%), Gaps = 17/154 (11%)
Query: 27  SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDI---------VNS 77
            H +I+  +G C Q     ++      G LR+ +     P ++ + DI            
Sbjct: 99  KHKNIINLLGACTQDGPLYVIVGYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKD 158
Query: 78  LAYLHFGFPRPI--------VLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR 129
           L    +   R +        + R+   +N+L  E NV K  DF L+  I   + +  T  
Sbjct: 159 LVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTN 218
Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL 163
                 + APE +   V   +S+V+SFG  ++E+
Sbjct: 219 GRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEI 252

>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1 Length = 317

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 7/145 (4%)
Query: 27  SHNHILKRIGCCLQTP-IPILVFQSVEYGTLRDCIFGAPL-PRLKIASDIVNSLAY-LHF 83
           SH ++L  +G CL++   P++V   +++G LR+ I      P +K        +A  + F
Sbjct: 90  SHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKF 149
Query: 84  GFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGE---THITTDRVIGTRGYSAPE 140
              +  V R+   +N + +E+   K  DF L+  + + E    H  T   +  + + A E
Sbjct: 150 LASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMLDKEFDSVHNKTGAKLPVK-WMALE 208
Query: 141 YISICVLNEKSNVFSFGAFLFELLA 165
            +       KS+V+SFG  L+EL+ 
Sbjct: 209 SLQTQKFTTKSDVWSFGVLLWELMT 233

>pdb|2FSL|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a+f327s) Activating Mutant Form-A Length = 367

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 15/98 (15%)
Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIG- 132
           I+  L Y+H      I+ R+ K  N+  NE+   K  DF        G    T D + G 
Sbjct: 141 ILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDF--------GLARHTADEMTGY 189
Query: 133 --TRGYSAPE-YISICVLNEKSNVFSFGAFLFELLAGR 167
             TR Y APE  ++    N+  +++S G  + ELL GR
Sbjct: 190 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 227

>pdb|2FST|X Chain X, Mitogen Activated Protein Kinase P38alpha (d176a+f327l) Activating Mutant Length = 367

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 15/98 (15%)
Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIG- 132
           I+  L Y+H      I+ R+ K  N+  NE+   K  DF        G    T D + G 
Sbjct: 141 ILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDF--------GLARHTADEMTGY 189
Query: 133 --TRGYSAPE-YISICVLNEKSNVFSFGAFLFELLAGR 167
             TR Y APE  ++    N+  +++S G  + ELL GR
Sbjct: 190 VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR 227

>pdb|4E5A|X Chain X, The W197a Mutant Of P38a Map Kinase Length = 360

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 15/98 (15%)
Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIG- 132
           I+  L Y+H      I+ R+ K  N+  NE+   K  DF        G    T D + G 
Sbjct: 134 ILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDF--------GLARHTDDEMTGY 182
Query: 133 --TRGYSAPE-YISICVLNEKSNVFSFGAFLFELLAGR 167
             TR Y APE  ++    N+  +++S G  + ELL GR
Sbjct: 183 VATRWYRAPEIMLNAMHYNQTVDIWSVGCIMAELLTGR 220

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	241
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	4e-47
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	3e-44
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	8e-40
3soc_A	322	Activin receptor type-2A; structural genomics cons	7e-34
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	2e-25
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	1e-21
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	2e-20
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	2e-20
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	3e-20
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	1e-19
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	1e-19
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	1e-19
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	2e-19
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	4e-19
3q4u_A	301	Activin receptor type-1; structural genomics conso	7e-19
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	9e-19
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	4e-17
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	5e-17
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	4e-15
3ork_A	311	Serine/threonine protein kinase; structural genomi	1e-14
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	3e-13
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	5e-13
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	1e-12
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	8e-12
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	9e-12
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	2e-11
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	2e-11
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	2e-11
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	2e-11
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	3e-11
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	7e-11
2a19_B	284	Interferon-induced, double-stranded RNA-activated	9e-11
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	1e-10
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	1e-10
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	1e-10
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	2e-10
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	4e-10
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	4e-10
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	4e-10
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	4e-10
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	6e-10
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	6e-10
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	7e-10
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	8e-10
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	1e-09
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	1e-09
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	1e-09
3uqc_A	286	Probable conserved transmembrane protein; structur	1e-09
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	2e-09
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	2e-09
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	4e-09
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	4e-09
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	4e-09
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	5e-09
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	6e-09
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	9e-09
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	9e-09
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	1e-08
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	1e-08
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	1e-08
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	1e-08
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	2e-08
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	3e-08
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	3e-08
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	3e-08
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	3e-08
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	4e-08
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	4e-08
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	4e-08
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	5e-08
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	5e-08
3pls_A	298	Macrophage-stimulating protein receptor; protein k	5e-08
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	6e-08
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	7e-08
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	8e-08
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	9e-08
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	1e-07
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	2e-07
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	2e-07
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	2e-07
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	2e-07
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	2e-07
3fme_A	290	Dual specificity mitogen-activated protein kinase;	3e-07
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	3e-07
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	4e-07
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	4e-07
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	5e-07
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	5e-07
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	6e-07
3an0_A	340	Dual specificity mitogen-activated protein kinase;	8e-07
2dyl_A	318	Dual specificity mitogen-activated protein kinase	8e-07
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	8e-07
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	9e-07
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	9e-07
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	1e-06
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	1e-06
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	1e-06
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	1e-06
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	1e-06
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	2e-06
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	2e-06
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	2e-06
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	2e-06
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	2e-06
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	3e-06
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	3e-06
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	3e-06
4aoj_A	329	High affinity nerve growth factor receptor; transf	3e-06
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	5e-06
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	5e-06
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	7e-06
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	7e-06
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	7e-06
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	8e-06
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	9e-06
3aln_A	327	Dual specificity mitogen-activated protein kinase;	1e-05
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	1e-05
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	1e-05
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	2e-05
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	2e-05
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	2e-05
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	3e-05
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	3e-05
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	3e-05
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	3e-05
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	3e-05
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	3e-05
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	3e-05
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	3e-05
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	4e-05
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	4e-05
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	4e-05
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	4e-05
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	4e-05
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	4e-05
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	4e-05
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	5e-05
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	5e-05
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	5e-05
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	6e-05
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	6e-05
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	8e-05
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	8e-05
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	1e-04
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	1e-04
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	1e-04
3bhy_A	283	Death-associated protein kinase 3; death associate	1e-04
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	1e-04
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	1e-04
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	1e-04
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	1e-04
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	2e-04
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	2e-04
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	2e-04
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	2e-04
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	2e-04
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	2e-04
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	2e-04
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	2e-04
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	2e-04
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	3e-04
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	3e-04
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	3e-04
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	4e-04
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	4e-04
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	4e-04
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	7e-04
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	7e-04
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	8e-04
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	9e-04

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  157 bits (400), Expect = 4e-47
 Identities = 72/228 (31%), Positives = 104/228 (45%), Gaps = 24/228 (10%)

Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLP--------RLKIASDIVN 76
              H H++  IG C +    IL+++ +E G L+  ++G+ LP        RL+I      
Sbjct: 91  FCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAAR 150

Query: 77  SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEG-ETHITTDRVIGTRG 135
            L YLH      I+ R+ K+ NIL +E  V K  DF +S    E  +TH++T  V GT G
Sbjct: 151 GLHYLHTR---AIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLST-VVKGTLG 206

Query: 136 YSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFN--EYLKNYLE 193
           Y  PEY     L EKS+V+SFG  LFE+L  R  I              N  E+      
Sbjct: 207 YIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAI-----VQSLPREMVNLAEWAVESHN 261

Query: 194 DKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD 241
           + +   I  P +   I      + L       ++C+  S EDRP+M D
Sbjct: 262 NGQLEQIVDPNLADKIR----PESLRKFGDTAVKCLALSSEDRPSMGD 305

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  150 bits (381), Expect = 3e-44
 Identities = 66/222 (29%), Positives = 111/222 (50%), Gaps = 14/222 (6%)

Query: 28  HNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA-----PLP---RLKIASDIVNSLA 79
           H ++L+  G C+     +LV+  +  G++  C+        PL    R +IA      LA
Sbjct: 86  HRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLA 145

Query: 80  YLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAP 139
           YLH      I+ R+ K  NIL +EE  A   DF L+  +   +TH+TT  V GT G+ AP
Sbjct: 146 YLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTT-AVRGTIGHIAP 204

Query: 140 EYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTG 199
           EY+S    +EK++VF +G  L EL+ G+    DL +  +D      +++K  L++K+   
Sbjct: 205 EYLSTGKSSEKTDVFGYGVMLLELITGQRAF-DLARLANDDDVMLLDWVKGLLKEKKLEA 263

Query: 200 IPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD 241
           +    +  +      ++++    Q+ L C  +SP +RP M +
Sbjct: 264 LVDVDLQGNYK----DEEVEQLIQVALLCTQSSPMERPKMSE 301

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score =  138 bits (350), Expect = 8e-40
 Identities = 53/232 (22%), Positives = 98/232 (42%), Gaps = 26/232 (11%)

Query: 20  ITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFG----APLP---RLKIAS 72
           I   A+  H ++++ +G         LV+  +  G+L D +       PL    R KIA 
Sbjct: 81  IKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQ 140

Query: 73  DIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGE-THITTDRVI 131
              N + +LH       + R+ K+ NIL +E   AK  DF L+ +  +   T +T+ R++
Sbjct: 141 GAANGINFLH---ENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMTS-RIV 196

Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNY 191
           GT  Y APE +    +  KS+++SFG  L E++ G   +     D H       +  +  
Sbjct: 197 GTTAYMAPEALRGE-ITPKSDIYSFGVVLLEIITGLPAV-----DEHREPQLLLDIKEEI 250

Query: 192 LEDKRFTGIPAPIIVQDIPCIEK--EQQLHASAQLTLECVNNSPEDRPTMVD 241
            ++++         + D   +       + A   +  +C++     RP +  
Sbjct: 251 EDEEK----TIEDYI-D-KKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKK 296

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score =  123 bits (310), Expect = 7e-34
 Identities = 49/244 (20%), Positives = 91/244 (37%), Gaps = 38/244 (15%)

Query: 24  AQMSHNHILKRIGCCLQTPIP----ILVFQSVEYGTLRDCIFGAPLP---RLKIASDIVN 76
             M H +IL+ IG   +         L+    E G+L D +    +       IA  +  
Sbjct: 73  PGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKANVVSWNELCHIAETMAR 132

Query: 77  SLAYLH------FGFPRP-IVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR 129
            LAYLH          +P I  R+ K++N+L      A   DF L++    G++   T  
Sbjct: 133 GLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDTHG 192

Query: 130 VIGTRGYSAPEYISICVLNE-----KSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFF 184
            +GTR Y APE +   +  +     + ++++ G  L+EL +                   
Sbjct: 193 QVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCT----------AADGPV 242

Query: 185 NEYLKNYLE----DKRFTGIPAPIIVQ----DIP-CIEKEQQLHASAQLTLECVNNSPED 235
           +EY+  + E          +   ++ +     +    +K   +    +   EC ++  E 
Sbjct: 243 DEYMLPFEEEIGQHPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEA 302

Query: 236 RPTM 239
           R + 
Sbjct: 303 RLSA 306

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score =  101 bits (253), Expect = 2e-25
 Identities = 45/253 (17%), Positives = 81/253 (32%), Gaps = 45/253 (17%)

Query: 24  AQMSHNHILKRIGCCLQTPIPI-----LVFQSVEYGTLRDCIFGAPLP---RLKIASDIV 75
             M H++I + I    +          LV +    G+L   +           ++A  + 
Sbjct: 62  PLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSLHTSDWVSSCRLAHSVT 121

Query: 76  NSLAYLHFGFPR------PIVLRNFKTQNILFNEENVAKWFDFLLSI------SIPEGET 123
             LAYLH   PR       I  R+  ++N+L   +      DF LS+       +  GE 
Sbjct: 122 RGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVRPGEE 181

Query: 124 HITTDRVIGTRGYSAPEYISICV-------LNEKSNVFSFGAFLFELLAGRIHIWDLLKD 176
                  +GT  Y APE +   V         ++ ++++ G   +E+             
Sbjct: 182 DNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMR--------CT 233

Query: 177 THDHGCFFNEYLKNYLE----DKRFTGIPAPIIVQ----DIP--CIEKEQQLHASAQLTL 226
               G    EY   +         F  +   +  +      P    E    + +  +   
Sbjct: 234 DLFPGESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIE 293

Query: 227 ECVNNSPEDRPTM 239
           +C +   E R T 
Sbjct: 294 DCWDQDAEARLTA 306

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 90.6 bits (225), Expect = 1e-21
 Identities = 45/240 (18%), Positives = 88/240 (36%), Gaps = 32/240 (13%)

Query: 25  QMSHNHILKRIGCCLQTPIPI----LVFQSVEYGTLRDCIFGAPLP---RLKIASDIVNS 77
            M H +IL  I   ++         L+    E G+L D +    L     LK+A   V+ 
Sbjct: 87  LMRHENILGFIAADIKGTGSWTQLYLITDYHENGSLYDYLKSTTLDAKSMLKLAYSSVSG 146

Query: 78  LAYLHFGFPR-----PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR--V 130
           L +LH           I  R+ K++NIL  +       D  L++        +       
Sbjct: 147 LCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTR 206

Query: 131 IGTRGYSAPEYISICVL------NEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFF 184
           +GT+ Y  PE +   +          ++++SFG  L+E+    +          ++   +
Sbjct: 207 VGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSG----GIVEEYQLPY 262

Query: 185 NEYLKNYLEDKRFTGIPAPIIVQ----DIP-CIEKEQQLHASAQLTLECVNNSPEDRPTM 239
           ++ +     D  +  +   + ++      P     ++ L    +L  EC  ++P  R T 
Sbjct: 263 HDLVP---SDPSYEDMREIVCIKKLRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTA 319

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 87.5 bits (217), Expect = 2e-20
 Identities = 45/240 (18%), Positives = 84/240 (35%), Gaps = 32/240 (13%)

Query: 25  QMSHNHILKRIGCCLQTPIPI----LVFQSVEYGTLRDCIFGAPLP---RLKIASDIVNS 77
            + H +IL  I    +         LV    E+G+L D +    +     +K+A    + 
Sbjct: 92  MLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASG 151

Query: 78  LAYLHFGFPR-----PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR--V 130
           LA+LH           I  R+ K++NIL  +       D  L++        I       
Sbjct: 152 LAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHR 211

Query: 131 IGTRGYSAPEYISICVL------NEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFF 184
           +GT+ Y APE +   +        +++++++ G   +E+                H  + 
Sbjct: 212 VGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARR-------CSIGGIHEDYQ 264

Query: 185 NEYLKNYLEDKRFTGIPAPIIVQ----DIP-CIEKEQQLHASAQLTLECVNNSPEDRPTM 239
             Y      D     +   +  Q    +IP   +  + L   A++  EC   +   R T 
Sbjct: 265 LPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTA 324

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 86.2 bits (214), Expect = 2e-20
 Identities = 44/156 (28%), Positives = 69/156 (44%), Gaps = 15/156 (9%)

Query: 24  AQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLP---RLKIASDIVNSLAY 80
           A + H +I+   G CL+ P   LV +    G L   + G  +P    +  A  I   + Y
Sbjct: 61  AMLKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRVLSGKRIPPDILVNWAVQIARGMNY 120

Query: 81  LHFGFPRPIVLRNFKTQNILFNEE--------NVAKWFDFLLSISIPEGETHITTDRVIG 132
           LH     PI+ R+ K+ NIL  ++         + K  DF L+          T     G
Sbjct: 121 LHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLARE----WHRTTKMSAAG 176

Query: 133 TRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRI 168
              + APE I   + ++ S+V+S+G  L+ELL G +
Sbjct: 177 AYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEV 212

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 86.6 bits (215), Expect = 3e-20
 Identities = 54/234 (23%), Positives = 89/234 (38%), Gaps = 41/234 (17%)

Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIF--GAPLP---RLKIASDIVNSLA 79
            + H ++LK IG   +      + + ++ GTLR  I    +  P   R+  A DI + +A
Sbjct: 63  CLEHPNVLKFIGVLYKDKRLNFITEYIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMA 122

Query: 80  YLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR---------- 129
           YLH      I+ R+  + N L  E       DF L+  + + +T     R          
Sbjct: 123 YLHS---MNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKR 179

Query: 130 --VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEY 187
             V+G   + APE I+    +EK +VFSFG  L E++              D+     ++
Sbjct: 180 YTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVN-ADP------DYLPRTMDF 232

Query: 188 LKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD 241
             N                 + P         +   +T+ C +  PE RP+ V 
Sbjct: 233 GLNVRGFLD------RYCPPNCP--------PSFFPITVRCCDLDPEKRPSFVK 272

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 84.7 bits (210), Expect = 1e-19
 Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 10/152 (6%)

Query: 24  AQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI----FGAPLP---RLKIASDIVN 76
            ++ H +I+  +G   Q P   +V + +  G+L   +        L    RL +A D+  
Sbjct: 89  KRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAK 148

Query: 77  SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGY 136
            + YLH     PIV RN K+ N+L +++   K  DF LS    +  T +++    GT  +
Sbjct: 149 GMNYLH-NRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRL--KASTFLSSKSAAGTPEW 205

Query: 137 SAPEYISICVLNEKSNVFSFGAFLFELLAGRI 168
            APE +     NEKS+V+SFG  L+EL   + 
Sbjct: 206 MAPEVLRDEPSNEKSDVYSFGVILWELATLQQ 237

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 84.3 bits (209), Expect = 1e-19
 Identities = 46/220 (20%), Positives = 86/220 (39%), Gaps = 30/220 (13%)

Query: 28  HNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI--FGAPLP---RLKIASDIVNSLAYLH 82
           H +IL  +G      + I V Q  E  +L   +            + IA      + YLH
Sbjct: 79  HVNILLFMGYSTAPQLAI-VTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLH 137

Query: 83  FGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYI 142
               + I+ R+ K+ NI  +E+N  K  DF L+            +++ G+  + APE I
Sbjct: 138 ---AKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVI 194

Query: 143 SICVLN---EKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTG 199
            +   N    +S+V++FG  L+EL+ G++   ++    ++         +  L       
Sbjct: 195 RMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNI----NNRDQIIEMVGRGSLSP----- 245

Query: 200 IPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM 239
                +  + P            +L  EC+    ++RP+ 
Sbjct: 246 -DLSKVRSNCP--------KRMKRLMAECLKKKRDERPSF 276

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 83.4 bits (207), Expect = 2e-19
 Identities = 28/156 (17%), Positives = 61/156 (39%), Gaps = 19/156 (12%)

Query: 24  AQMSHNHILKRIGCCLQTPIPIL--VFQSVEYGTLRDCI---FGAPLP---RLKIASDIV 75
              SH ++L  +G C   P P    +   + YG+L + +       +     +K A D+ 
Sbjct: 62  RIFSHPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMA 121

Query: 76  NSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRG 135
             +A+LH      I      +++++ +E+  A+     +  S         +   +    
Sbjct: 122 RGMAFLH-TLEPLIPRHALNSRSVMIDEDMTARISMADVKFSF-------QSPGRMYAPA 173

Query: 136 YSAPEYI---SICVLNEKSNVFSFGAFLFELLAGRI 168
           + APE +           ++++SF   L+EL+   +
Sbjct: 174 WVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREV 209

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 82.4 bits (204), Expect = 7e-19
 Identities = 46/247 (18%), Positives = 91/247 (36%), Gaps = 44/247 (17%)

Query: 24  AQMSHNHILKRIGCCLQTPIPI----LVFQSVEYGTLRDCIFGAPLP---RLKIASDIVN 76
             + H +IL  I   + +        L+    E G+L D +    L     L+I   I +
Sbjct: 57  VMLRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQLTTLDTVSCLRIVLSIAS 116

Query: 77  SLAYLH-----FGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR-- 129
            LA+LH           I  R+ K++NIL  +       D  L++   +    +      
Sbjct: 117 GLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNP 176

Query: 130 VIGTRGYSAPE------YISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCF 183
            +GT+ Y APE       +      ++ ++++FG  L+E+    +    +          
Sbjct: 177 RVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIV---------- 226

Query: 184 FNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKE-----------QQLHASAQLTLECVNNS 232
             +Y   + +       P+   ++ + C++++             L + A+L  EC   +
Sbjct: 227 -EDYKPPFYDVVPND--PSFEDMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQN 283

Query: 233 PEDRPTM 239
           P  R T 
Sbjct: 284 PSARLTA 290

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 82.4 bits (204), Expect = 9e-19
 Identities = 49/224 (21%), Positives = 86/224 (38%), Gaps = 36/224 (16%)

Query: 24  AQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA-------PLPRLKIASDIVN 76
           ++++H +I+K  G CL      LV +  E G+L + + GA           +        
Sbjct: 56  SRVNHPNIVKLYGACLNPVC--LVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQ 113

Query: 77  SLAYLHFGFPRPIVLRNFKTQNILFNEEN-VAKWFDFLLSISIPEGETHITTDRVIGTRG 135
            +AYLH   P+ ++ R+ K  N+L      V K  DF  +      +         G+  
Sbjct: 114 GVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTA-----CDIQTHMTNNKGSAA 168

Query: 136 YSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDK 195
           + APE       +EK +VFS+G  L+E++  R   +D +             +       
Sbjct: 169 WMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKP-FDEIGGPA------FRIMWAVHNGT 221

Query: 196 RFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM 239
           R      P +++++P             L   C +  P  RP+M
Sbjct: 222 R------PPLIKNLP--------KPIESLMTRCWSKDPSQRPSM 251

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 78.2 bits (193), Expect = 4e-17
 Identities = 35/162 (21%), Positives = 64/162 (39%), Gaps = 21/162 (12%)

Query: 24  AQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLP-----RLKIASDIVNSL 78
            Q  H +++  +G C+  P   ++    +  TL   +  A +        +IA +IV  +
Sbjct: 84  RQTRHENVVLFMGACMSPPHLAIITSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGM 143

Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLS---ISIPEGETHITTDRVIGTRG 135
            YLH    + I+ ++ K++N+ ++   V    DF L      +  G          G   
Sbjct: 144 GYLH---AKGILHKDLKSKNVFYDNGKV-VITDFGLFSISGVLQAGRREDKLRIQNGWLC 199

Query: 136 YSAPEYISICVL---------NEKSNVFSFGAFLFELLAGRI 168
           + APE I              ++ S+VF+ G   +EL A   
Sbjct: 200 HLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREW 241

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 77.4 bits (191), Expect = 5e-17
 Identities = 49/228 (21%), Positives = 82/228 (35%), Gaps = 40/228 (17%)

Query: 24  AQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLP-----RLKIASDIVNSL 78
           + ++H +I+K  G     P   +V + V  G L   +     P     +L++  DI   +
Sbjct: 78  SNLNHPNIVKLYGLMHNPPR--MVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGI 135

Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEEN-----VAKWFDFLLSISIPEGETHITTDRVIGT 133
            Y+      PIV R+ ++ NI     +      AK  DF LS      ++  +   ++G 
Sbjct: 136 EYMQ-NQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLS-----QQSVHSVSGLLGN 189

Query: 134 RGYSAPEYISICVL--NEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNY 191
             + APE I        EK++ +SF   L+ +L G    +D                   
Sbjct: 190 FQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGP-FDEYSYGK-----IKFINMIR 243

Query: 192 LEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM 239
            E  R      P I +D P             +   C +  P+ RP  
Sbjct: 244 EEGLR------PTIPEDCP--------PRLRNVIELCWSGDPKKRPHF 277

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 71.9 bits (177), Expect = 4e-15
 Identities = 45/150 (30%), Positives = 74/150 (49%), Gaps = 10/150 (6%)

Query: 23  AAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIF-GAPLPR---LKIASDIVNSL 78
           ++Q+SH +I+  I    +     LV + +E  TL + I    PL     +   + I++ +
Sbjct: 65  SSQLSHQNIVSMIDVDEEDDCYYLVMEYIEGPTLSEYIESHGPLSVDTAINFTNQILDGI 124

Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHIT-TDRVIGTRGYS 137
            + H      IV R+ K QNIL +     K FDF   I+    ET +T T+ V+GT  Y 
Sbjct: 125 KHAH---DMRIVHRDIKPQNILIDSNKTLKIFDF--GIAKALSETSLTQTNHVLGTVQYF 179

Query: 138 APEYISICVLNEKSNVFSFGAFLFELLAGR 167
           +PE       +E ++++S G  L+E+L G 
Sbjct: 180 SPEQAKGEATDECTDIYSIGIVLYEMLVGE 209

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 71.1 bits (175), Expect = 1e-14
 Identities = 44/154 (28%), Positives = 76/154 (49%), Gaps = 12/154 (7%)

Query: 23  AAQMSHNHILK--RIGC--CLQTPIPILVFQSVEYGTLRDCIF-GAPLPR---LKIASDI 74
           AA ++H  I+     G       P+P +V + V+  TLRD +    P+     +++ +D 
Sbjct: 66  AAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADA 125

Query: 75  VNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHIT-TDRVIGT 133
             +L + H      I+ R+ K  NI+ +  N  K  DF ++ +I +    +T T  VIGT
Sbjct: 126 CQALNFSH---QNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGT 182

Query: 134 RGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
             Y +PE      ++ +S+V+S G  L+E+L G 
Sbjct: 183 AQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGE 216

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 66.9 bits (164), Expect = 3e-13
 Identities = 32/161 (19%), Positives = 59/161 (36%), Gaps = 32/161 (19%)

Query: 23  AAQMSHNHILKRIGCCLQTPIPI-----------LVFQSVEYGTLRDCIF-GAPLP---R 67
           A ++   H+           +PI           +  + +    L   +    PL     
Sbjct: 88  AGRLQEPHV-----------VPIHDFGEIDGQLYVDMRLINGVDLAAMLRRQGPLAPPRA 136

Query: 68  LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHIT- 126
           + I   I ++L   H         R+ K +NIL + ++ A   DF   I+    +  +T 
Sbjct: 137 VAIVRQIGSALDAAH---AAGATHRDVKPENILVSADDFAYLVDF--GIASATTDEKLTQ 191

Query: 127 TDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
               +GT  Y APE  S      ++++++    L+E L G 
Sbjct: 192 LGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGS 232

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 66.6 bits (162), Expect = 5e-13
 Identities = 24/148 (16%), Positives = 56/148 (37%), Gaps = 27/148 (18%)

Query: 31  ILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDIVNSLAYLH-FGFPRPI 89
           +  R+   LQT   +L+  S  + +L          RL++   ++  LA LH +G    +
Sbjct: 183 LYPRMQSNLQTFGEVLLSHSSTHKSL------VHHARLQLTLQVIRLLASLHHYG----L 232

Query: 90  VLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVL-- 147
           V    +  +I+ ++        F     + +G + ++       RG++ PE  +  +L  
Sbjct: 233 VHTYLRPVDIVLDQRGGVFLTGF--EHLVRDGASAVSP----IGRGFAPPETTAERMLPF 286

Query: 148 --------NEKSNVFSFGAFLFELLAGR 167
                       + ++ G  ++ +    
Sbjct: 287 GQHHPTLMTFAFDTWTLGLAIYWIWCAD 314

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 66.0 bits (161), Expect = 1e-12
 Identities = 31/153 (20%), Positives = 60/153 (39%), Gaps = 20/153 (13%)

Query: 23  AAQMSHNHILK-----RIGCCLQTPIPILVFQSVEYGTLRDCIFGA-PLPR-LKIASDIV 75
            A++ H  I++             P+  +V + V   +L+       P+   +    +I+
Sbjct: 133 LAEVVHPSIVQIFNFVEHTDRHGDPVGYIVMEYVGGQSLKRSKGQKLPVAEAIAYLLEIL 192

Query: 76  NSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHIT-TDRVIGTR 134
            +L+YLH      +V  + K +NI+  EE + K  D           + I     + GT 
Sbjct: 193 PALSYLH---SIGLVYNDLKPENIMLTEEQL-KLIDLGAV-------SRINSFGYLYGTP 241

Query: 135 GYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           G+ APE +        +++++ G  L  L    
Sbjct: 242 GFQAPEIVR-TGPTVATDIYTVGRTLAALTLDL 273

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 63.4 bits (154), Expect = 8e-12
 Identities = 57/225 (25%), Positives = 92/225 (40%), Gaps = 43/225 (19%)

Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIF-----GAPLPR---LKIASDIVN 76
           ++ H  +++      + PI I V + +  G+L D  F     G  L     + +A+ I +
Sbjct: 318 KLRHEKLVQLYAVVSEEPIYI-VTEYMSKGSLLD--FLKGETGKYLRLPQLVDMAAQIAS 374

Query: 77  SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGY 136
            +AY+        V R+ +  NIL  E  V K  DF L+  I + E           + +
Sbjct: 375 GMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIK-W 430

Query: 137 SAPEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDK 195
           +APE         KS+V+SFG  L EL   GR+    ++          N  + + +E  
Sbjct: 431 TAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV----------NREVLDQVER- 479

Query: 196 RFTG--IPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT 238
              G  +P P    + P     + LH    L  +C    PE+RPT
Sbjct: 480 ---GYRMPCP---PECP-----ESLH---DLMCQCWRKEPEERPT 510

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 62.9 bits (153), Expect = 9e-12
 Identities = 57/225 (25%), Positives = 92/225 (40%), Gaps = 43/225 (19%)

Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIF-----GAPLPR---LKIASDIVN 76
           ++ H  +++      + PI I V + +  G+L D  F     G  L     + +A+ I +
Sbjct: 235 KLRHEKLVQLYAVVSEEPIYI-VTEYMSKGSLLD--FLKGETGKYLRLPQLVDMAAQIAS 291

Query: 77  SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGY 136
            +AY+        V R+ +  NIL  E  V K  DF L+  I + E           + +
Sbjct: 292 GMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIK-W 347

Query: 137 SAPEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDK 195
           +APE         KS+V+SFG  L EL   GR+    ++          N  + + +E  
Sbjct: 348 TAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV----------NREVLDQVER- 396

Query: 196 RFTG--IPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT 238
              G  +P P    + P     + LH    L  +C    PE+RPT
Sbjct: 397 ---GYRMPCP---PECP-----ESLH---DLMCQCWRKEPEERPT 427

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 62.3 bits (151), Expect = 2e-11
 Identities = 22/148 (14%), Positives = 52/148 (35%), Gaps = 26/148 (17%)

Query: 31  ILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDIVNSLAYLHFGFPRPIV 90
           +  R+   LQT   +L+  S  + +L          RL++   ++  LA LH      +V
Sbjct: 178 LYPRMQSNLQTFGEVLLSHSSTHKSLVH------HARLQLTLQVIRLLASLHH---YGLV 228

Query: 91  LRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVL--- 147
               +  +I+ ++        F     + +G   +++     +RG+  PE  +       
Sbjct: 229 HTYLRPVDIVLDQRGGVFLTGF--EHLVRDGARVVSS----VSRGFEPPELEARRATISY 282

Query: 148 --------NEKSNVFSFGAFLFELLAGR 167
                       + ++ G  ++ +    
Sbjct: 283 HRDRRTLMTFSFDAWALGLVIYWIWCAD 310

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 61.6 bits (150), Expect = 2e-11
 Identities = 39/174 (22%), Positives = 64/174 (36%), Gaps = 25/174 (14%)

Query: 16  CINNITYAAQMSHNHILKRIGCCLQTPIP----ILVFQSVEYGTLRDCI-----FGAPLP 66
                      +H +IL+ +  CL+         L+    + GTL + I      G  L 
Sbjct: 73  AQREADMHRLFNHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLT 132

Query: 67  R---LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDF----LLSISIP 119
               L +   I   L  +H    +    R+ K  NIL  +E      D        I + 
Sbjct: 133 EDQILWLLLGICRGLEAIH---AKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVE 189

Query: 120 EGETHITTDRVIGTRG---YSAPEYISI---CVLNEKSNVFSFGAFLFELLAGR 167
                +T       R    Y APE  S+   CV++E+++V+S G  L+ ++ G 
Sbjct: 190 GSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGE 243

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 62.1 bits (151), Expect = 2e-11
 Identities = 45/227 (19%), Positives = 92/227 (40%), Gaps = 44/227 (19%)

Query: 25  QMSHNHILKRIGCCLQTPIPI-LVFQSVEYGTLRDCIF-----GAPLPR---LKIASDIV 75
           ++ H ++++ +G C + P P  ++ + + YG L D  +        +     L +A+ I 
Sbjct: 272 EIKHPNLVQLLGVCTREP-PFYIITEFMTYGNLLD--YLRECNRQEVSAVVLLYMATQIS 328

Query: 76  NSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRG 135
           +++ YL     +  + RN   +N L  E ++ K  DF LS  +               + 
Sbjct: 329 SAMEYLEK---KNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIK- 384

Query: 136 YSAPEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLED 194
           ++APE ++    + KS+V++FG  L+E+   G      +              +   LE 
Sbjct: 385 WTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID----------LSQVYELLEK 434

Query: 195 KRFTG--IPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM 239
                  +  P   +  P     ++++   +L   C   +P DRP+ 
Sbjct: 435 ----DYRMERP---EGCP-----EKVY---ELMRACWQWNPSDRPSF 466

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 55/230 (23%), Positives = 90/230 (39%), Gaps = 33/230 (14%)

Query: 24  AQMSHNHILKRIGCCLQTPI-PI-LVFQSVEYGTLRDCIFGA----PLPRL-KIASDIVN 76
             + H +I+K  G C +     I L+ + +  G+L++ +        L +  K A  I  
Sbjct: 78  RNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICK 137

Query: 77  SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGET--HITTDRVIGTR 134
            + YL     R  V R+   +N+L   E+  K  DF L+ +I   +    +  DR     
Sbjct: 138 GMDYLG---SRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDRDSPVF 194

Query: 135 GYSAPEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFF----NEYLK 189
            Y APE +        S+V+SFG  L ELL         +       G          L 
Sbjct: 195 WY-APECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLV 253

Query: 190 NYLED-KRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT 238
           N L++ KR   +P P    + P      +++   QL  +C    P +R +
Sbjct: 254 NTLKEGKR---LPCP---PNCP-----DEVY---QLMRKCWEFQPSNRTS 289

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 60.8 bits (148), Expect = 3e-11
 Identities = 60/231 (25%), Positives = 89/231 (38%), Gaps = 37/231 (16%)

Query: 24  AQMSHNHILKRIGCCLQT-PIPI-LVFQSVEYGTLRDCIFG--APLPRL-KIASDIVNSL 78
             + H HI+K  GCC       + LV + V  G+LRD +      L +L   A  I   +
Sbjct: 88  RTLYHEHIIKYKGCCEDAGAASLQLVMEYVPLGSLRDYLPRHSIGLAQLLLFAQQICEGM 147

Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYS- 137
           AYLH    +  + R+   +N+L + + + K  DF L+ ++PEG  +          G S 
Sbjct: 148 AYLH---AQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRV----REDGDSP 200

Query: 138 ----APEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGC----FFNEYL 188
               APE +        S+V+SFG  L+ELL           K     G          L
Sbjct: 201 VFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRL 260

Query: 189 KNYLED-KRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT 238
              LE  +R   +P P      P      +++    L   C       RPT
Sbjct: 261 TELLERGER---LPRP---DKCP-----AEVY---HLMKNCWETEASFRPT 297

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 59.9 bits (145), Expect = 7e-11
 Identities = 39/191 (20%), Positives = 69/191 (36%), Gaps = 26/191 (13%)

Query: 9   HRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI---FGAPL 65
                 +    I      S  + + ++          +  Q      L+D +        
Sbjct: 101 SPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLED 160

Query: 66  PR----LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEG 121
                 L I   I  ++ +LH    + ++ R+ K  NI F  ++V K  DF L  ++ + 
Sbjct: 161 REHGVCLHIFIQIAEAVEFLHS---KGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQD 217

Query: 122 ETHITTD----------RVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG----- 166
           E   T              +GT+ Y +PE I     + K ++FS G  LFELL       
Sbjct: 218 EEEQTVLTPMPAYATHTGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQM 277

Query: 167 -RIHIWDLLKD 176
            R+ I   +++
Sbjct: 278 ERVRIITDVRN 288

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 59.2 bits (144), Expect = 9e-11
 Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 15/124 (12%)

Query: 52  EY---GTLRDCI---FGAPLPR---LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFN 102
           E+   GTL   I    G  L +   L++   I   + Y+H    + ++ R+ K  NI   
Sbjct: 100 EFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIH---SKKLINRDLKPSNIFLV 156

Query: 103 EENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFE 162
           +    K  DF L  S+        +    GT  Y +PE IS     ++ ++++ G  L E
Sbjct: 157 DTKQVKIGDFGLVTSLKNDGKRTRS---KGTLRYMSPEQISSQDYGKEVDLYALGLILAE 213

Query: 163 LLAG 166
           LL  
Sbjct: 214 LLHV 217

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 59.2 bits (144), Expect = 1e-10
 Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 4/102 (3%)

Query: 68  LKIASDIVNSLAYLH--FGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHI 125
           L++ + +  +L   H        ++ R+ K  N+  + +   K  DF L+  +    +  
Sbjct: 114 LRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFA 173

Query: 126 TTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
            T   +GT  Y +PE ++    NEKS+++S G  L+EL A  
Sbjct: 174 KT--FVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALM 213

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 59.8 bits (145), Expect = 1e-10
 Identities = 38/181 (20%), Positives = 63/181 (34%), Gaps = 34/181 (18%)

Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEEN-----VAKWFDFLLSISIPEGET 123
            +     + LA+LH      IV R+ K  NIL +  N      A   DF L   +  G  
Sbjct: 122 TLLQQTTSGLAHLHS---LNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRH 178

Query: 124 HIT-TDRVIGTRGYSAPEYISICV---LNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHD 179
             +    V GT G+ APE +S           ++FS G   + +++   H +     +  
Sbjct: 179 SFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFG---KSLQ 235

Query: 180 HGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQ-LTLECVNNSPEDRPT 238
                N  L                    + C+  E+     A+ L  + +   P+ RP+
Sbjct: 236 RQ--ANILLGAC----------------SLDCLHPEKHEDVIARELIEKMIAMDPQKRPS 277

Query: 239 M 239
            
Sbjct: 278 A 278

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 59.7 bits (145), Expect = 1e-10
 Identities = 56/228 (24%), Positives = 97/228 (42%), Gaps = 49/228 (21%)

Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIF-----GAPLPR---LKIASDIVN 76
            + H+ ++K      + PI I + + +  G+L D  F     G+  P    +  ++ I  
Sbjct: 239 TLQHDKLVKLHAVVTKEPIYI-ITEFMAKGSLLD--FLKSDEGSKQPLPKLIDFSAQIAE 295

Query: 77  SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRG- 135
            +A++     R  + R+ +  NIL +   V K  DF L+  I + E         G +  
Sbjct: 296 GMAFIE---QRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTARE----GAKFP 348

Query: 136 --YSAPEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYL 192
             ++APE I+      KS+V+SFG  L E++  GRI    +           N  +   L
Sbjct: 349 IKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMS----------NPEVIRAL 398

Query: 193 EDKRFTG--IPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT 238
           E     G  +P P   ++ P     ++L+    + + C  N PE+RPT
Sbjct: 399 ER----GYRMPRP---ENCP-----EELY---NIMMRCWKNRPEERPT 431

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 59.2 bits (144), Expect = 2e-10
 Identities = 32/152 (21%), Positives = 61/152 (40%), Gaps = 21/152 (13%)

Query: 24  AQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA----PLPRL-KIASDIVNSL 78
           A + + H+ + +G CL + + + + Q + +G L D +           L      I   +
Sbjct: 72  ASVDNPHVCRLLGICLTSTVQL-ITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGM 130

Query: 79  AYL---HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTR- 134
            YL           V R+   +N+L       K  DF L+  +   E     +   G + 
Sbjct: 131 NYLEDRRL------VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAE---GGKV 181

Query: 135 --GYSAPEYISICVLNEKSNVFSFGAFLFELL 164
              + A E I   +   +S+V+S+G  ++EL+
Sbjct: 182 PIKWMALESILHRIYTHQSDVWSYGVTVWELM 213

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 58.1 bits (141), Expect = 4e-10
 Identities = 59/233 (25%), Positives = 90/233 (38%), Gaps = 39/233 (16%)

Query: 24  AQMSHNHILKRIGCCLQTPI-PI-LVFQSVEYGTLRDCIFGA----PLPRL-KIASDIVN 76
             +  + I+K  G         + LV + +  G LRD +          RL   +S I  
Sbjct: 79  KALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICK 138

Query: 77  SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGY 136
            + YL     R  V R+   +NIL   E   K  DF L+  +P  + +          G 
Sbjct: 139 GMEYLG---SRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVV----REPGQ 191

Query: 137 S-----APEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFF----NE 186
           S     APE +S  + + +S+V+SFG  L+EL            +     GC        
Sbjct: 192 SPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALS 251

Query: 187 YLKNYLED-KRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT 238
            L   LE+ +R   +PAP      P      ++H   +L   C   SP+DRP+
Sbjct: 252 RLLELLEEGQR---LPAP---PACP-----AEVH---ELMKLCWAPSPQDRPS 290

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 57.7 bits (140), Expect = 4e-10
 Identities = 35/153 (22%), Positives = 58/153 (37%), Gaps = 15/153 (9%)

Query: 25  QMSHNHILKRIGCCLQTPIP----ILVFQSVEYGTLRDCI--FGAPLPRL--KIASDIVN 76
            + H +I++       T       +LV + +  GTL+  +  F     ++       I+ 
Sbjct: 81  GLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILK 140

Query: 77  SLAYLHFGFPRPIVLRNFKTQNILFNEEN-VAKWFDFLLSISIPEGETHITTDRVIGTRG 135
            L +LH   P PI+ R+ K  NI         K  D  L+              VIGT  
Sbjct: 141 GLQFLHTRTP-PIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAK----AVIGTPE 195

Query: 136 YSAPEYISICVLNEKSNVFSFGAFLFELLAGRI 168
           + APE       +E  +V++FG  + E+     
Sbjct: 196 FMAPEMYEEKY-DESVDVYAFGMCMLEMATSEY 227

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 57.7 bits (140), Expect = 4e-10
 Identities = 55/239 (23%), Positives = 93/239 (38%), Gaps = 50/239 (20%)

Query: 24  AQMSHNHILKRIGCCLQTPI-PI-LVFQSVEYGTLRDCIFGAPLPR----------LKIA 71
             + H++I+K  G C       + L+ + + YG+LRD  +   L +          L+  
Sbjct: 66  KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRD--Y---LQKHKERIDHIKLLQYT 120

Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           S I   + YL     +  + R+  T+NIL   EN  K  DF L+  +P+ +         
Sbjct: 121 SQICKGMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEFFKV---- 173

Query: 132 GTRGYS-----APEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGC--- 182
              G S     APE ++    +  S+V+SFG  L+EL            +     G    
Sbjct: 174 KEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQ 233

Query: 183 --FFNEYLKNYLED-KRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT 238
                 +L   L++  R   +P P      P      +++    +  EC NN+   RP+
Sbjct: 234 GQMIVFHLIELLKNNGR---LPRP---DGCP-----DEIY---MIMTECWNNNVNQRPS 278

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 57.7 bits (139), Expect = 4e-10
 Identities = 27/163 (16%), Positives = 51/163 (31%), Gaps = 23/163 (14%)

Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI------FGAPLP---RLKIASDIV 75
               +  +K     L     +LV +   YGTL + I          +P    +  A  ++
Sbjct: 123 PSMQHMFMKFYSAHLFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRML 182

Query: 76  NSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWF-----------DFLLSISIPEGETH 124
             +  +H      I+  + K  N +     + +             D   SI +      
Sbjct: 183 YMIEQVH---DCEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKG 239

Query: 125 ITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
                   T G+   E +S    N + + F   A ++ +L G 
Sbjct: 240 TIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGT 282

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 57.4 bits (139), Expect = 6e-10
 Identities = 55/239 (23%), Positives = 94/239 (39%), Gaps = 50/239 (20%)

Query: 24  AQMSHNHILKRIGCCLQTPI-PI-LVFQSVEYGTLRDCIFGAPLPR----------LKIA 71
             + H++I+K  G C       + L+ + + YG+LRD  +   L +          L+  
Sbjct: 97  KSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRD--Y---LQKHKERIDHIKLLQYT 151

Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
           S I   + YL     +  + R+  T+NIL   EN  K  DF L+  +P+ + +       
Sbjct: 152 SQICKGMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEYYKV---- 204

Query: 132 GTRGYS-----APEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGC--- 182
              G S     APE ++    +  S+V+SFG  L+EL            +     G    
Sbjct: 205 KEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQ 264

Query: 183 --FFNEYLKNYLED-KRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT 238
                 +L   L++  R   +P P      P      +++    +  EC NN+   RP+
Sbjct: 265 GQMIVFHLIELLKNNGR---LPRP---DGCP-----DEIY---MIMTECWNNNVNQRPS 309

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 57.9 bits (140), Expect = 6e-10
 Identities = 53/227 (23%), Positives = 86/227 (37%), Gaps = 46/227 (20%)

Query: 24  AQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIF------GAPLPRL-KIASDIVN 76
            Q  H HI+K IG   + P+ I + +    G LR   F         L  L   A  +  
Sbjct: 446 RQFDHPHIVKLIGVITENPVWI-IMELCTLGELRS--FLQVRKFSLDLASLILYAYQLST 502

Query: 77  SLAYL---HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGT 133
           +LAYL    F      V R+   +N+L +  +  K  DF LS  + +   +  +   +  
Sbjct: 503 ALAYLESKRF------VHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPI 556

Query: 134 RGYSAPEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYL 192
           +   APE I+       S+V+ FG  ++E+L  G      +           N  +   +
Sbjct: 557 KWM-APESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVK----------NNDVIGRI 605

Query: 193 ED-KRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT 238
           E+ +R   +P P    + P       L+    L  +C    P  RP 
Sbjct: 606 ENGER---LPMP---PNCP-----PTLY---SLMTKCWAYDPSRRPR 638

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 57.0 bits (138), Expect = 7e-10
 Identities = 36/150 (24%), Positives = 60/150 (40%), Gaps = 11/150 (7%)

Query: 24  AQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI---FGAPLPR---LKIASDIVNS 77
           A M H +I++      +     +V    E G L   I    G        L     I  +
Sbjct: 78  ANMKHPNIVQYRESFEENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLA 137

Query: 78  LAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYS 137
           L ++H    R I+ R+ K+QNI   ++   +  DF ++  +            IGT  Y 
Sbjct: 138 LKHVH---DRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVELARA--CIGTPYYL 192

Query: 138 APEYISICVLNEKSNVFSFGAFLFELLAGR 167
           +PE       N KS++++ G  L+EL   +
Sbjct: 193 SPEICENKPYNNKSDIWALGCVLYELCTLK 222

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 56.9 bits (138), Expect = 8e-10
 Identities = 37/188 (19%), Positives = 57/188 (30%), Gaps = 44/188 (23%)

Query: 23  AAQMSHNHILKRIGC-------CLQTPIPILVFQSVEY--GTLRDCI--FGAPLP---RL 68
                H   ++            LQT          E    +L+     +GA LP     
Sbjct: 111 EKVGQHPCCVRLEQAWEEGGILYLQT----------ELCGPSLQQHCEAWGASLPEAQVW 160

Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTD 128
               D + +LA+LH    + +V  + K  NI        K  DF L + +          
Sbjct: 161 GYLRDTLLALAHLH---SQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGAGEV-- 215

Query: 129 RVIGTRGYSAPEYISICVLNE----KSNVFSFGAFLFELLAGRIH-----IWDLLKDTHD 179
              G   Y APE     +L       ++VFS G  + E+            W  L+  + 
Sbjct: 216 -QEGDPRYMAPE-----LLQGSYGTAADVFSLGLTILEVACNMELPHGGEGWQQLRQGYL 269

Query: 180 HGCFFNEY 187
              F    
Sbjct: 270 PPEFTAGL 277

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 48/247 (19%), Positives = 85/247 (34%), Gaps = 57/247 (23%)

Query: 24  AQMSHNHILKRIGCCLQTPIPILVFQSV---------EY---GTLRDCIF---GAPLPR- 67
           A++ H  I++     L+      +  S          +      L+D +           
Sbjct: 58  AKLEHPGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERER 117

Query: 68  ---LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH 124
              L I   I  ++ +LH    + ++ R+ K  NI F  ++V K  DF L  ++ + E  
Sbjct: 118 SVCLHIFLQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEE 174

Query: 125 ITTDRV----------IGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLL 174
            T              +GT+ Y +PE I     + K ++FS G  LFELL          
Sbjct: 175 QTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLYP-------- 226

Query: 175 KDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPE 234
                   F  +  +             P+  Q  PC            +  + ++ SP 
Sbjct: 227 --------FSTQMERVRTLTDVRNLKFPPLFTQKYPCE---------YVMVQDMLSPSPM 269

Query: 235 DRPTMVD 241
           +RP  ++
Sbjct: 270 ERPEAIN 276

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 56.6 bits (136), Expect = 1e-09
 Identities = 11/103 (10%), Positives = 28/103 (27%), Gaps = 10/103 (9%)

Query: 67  RLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHIT 126
              + + ++   A L     + +V  +F   N+    +      D      +        
Sbjct: 196 LHILTAQLIRLAANLQS---KGLVHGHFTPDNLFIMPDGRLMLGDVSALWKVGT-----R 247

Query: 127 TDRVIGTRGYSAPEYI--SICVLNEKSNVFSFGAFLFELLAGR 167
                    Y+  E++  S        N +  G  ++ +    
Sbjct: 248 GPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLF 290

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 56.1 bits (136), Expect = 1e-09
 Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 21/151 (13%)

Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIF-----GAPLPR---LKIASDIVN 76
           Q+ H  +++      Q PI I + + +E G+L D  F     G  L     L +A+ I  
Sbjct: 64  QLQHQRLVRLYAVVTQEPIYI-ITEYMENGSLVD--FLKTPSGIKLTINKLLDMAAQIAE 120

Query: 77  SLAYL---HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGT 133
            +A++   ++      + R+ +  NIL ++    K  DF L+  I + E           
Sbjct: 121 GMAFIEERNY------IHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPI 174

Query: 134 RGYSAPEYISICVLNEKSNVFSFGAFLFELL 164
           + ++APE I+      KS+V+SFG  L E++
Sbjct: 175 K-WTAPEAINYGTFTIKSDVWSFGILLTEIV 204

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 55.9 bits (135), Expect = 1e-09
 Identities = 14/147 (9%), Positives = 41/147 (27%), Gaps = 34/147 (23%)

Query: 23  AAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPR--LKIASDIVNSLAY 80
            +++    + + +         ++V + +  G+L++    +P P   ++    +  +   
Sbjct: 85  LSRIDKPGVARVLDVVHTRAGGLVVAEWIRGGSLQEVADTSPSPVGAIRAMQSLAAAADA 144

Query: 81  LHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPE 140
            H      + L       +  + +                          +         
Sbjct: 145 AH---RAGVALSIDHPSRVRVSIDGDVV----------------------LAYPATMPDA 179

Query: 141 YISICVLNEKSNVFSFGAFLFELLAGR 167
                  N + ++   GA L+ LL  R
Sbjct: 180 -------NPQDDIRGIGASLYALLVNR 199

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 47/227 (20%), Positives = 92/227 (40%), Gaps = 44/227 (19%)

Query: 24  AQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA----PLPRL-KIASDIVNSL 78
            Q+ + +I++ IG C    + + V +    G L   + G     P+  + ++   +   +
Sbjct: 65  HQLDNPYIVRLIGVCQAEALML-VMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGM 123

Query: 79  AYL---HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTR- 134
            YL   +F      V R+   +N+L    + AK  DF LS ++   +++ T       + 
Sbjct: 124 KYLEEKNF------VHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARS--AGKW 175

Query: 135 --GYSAPEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNY 191
              + APE I+    + +S+V+S+G  ++E L+ G+     +            E +   
Sbjct: 176 PLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKG---------PEVMAFI 226

Query: 192 LEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT 238
            + KR   +  P    + P      +L+    L  +C     EDRP 
Sbjct: 227 EQGKR---MECP---PECP-----PELY---ALMSDCWIYKWEDRPD 259

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 55.3 bits (134), Expect = 2e-09
 Identities = 34/151 (22%), Positives = 64/151 (42%), Gaps = 19/151 (12%)

Query: 24  AQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA---PLPRL-KIASDIVNSLA 79
            Q+ + +I++ IG C      + V +  E G L   +          + ++   +   + 
Sbjct: 73  QQLDNPYIVRMIGICEAESWML-VMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMK 131

Query: 80  YL---HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTR-- 134
           YL   +F      V R+   +N+L   ++ AK  DF LS ++   E +         +  
Sbjct: 132 YLEESNF------VHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQT--HGKWP 183

Query: 135 -GYSAPEYISICVLNEKSNVFSFGAFLFELL 164
             + APE I+    + KS+V+SFG  ++E  
Sbjct: 184 VKWYAPECINYYKFSSKSDVWSFGVLMWEAF 214

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 55.0 bits (133), Expect = 4e-09
 Identities = 32/152 (21%), Positives = 61/152 (40%), Gaps = 21/152 (13%)

Query: 24  AQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA----PLPRL-KIASDIVNSL 78
           A + + H+ + +G CL + + + + Q + +G L D +           L      I   +
Sbjct: 72  ASVDNPHVCRLLGICLTSTVQL-ITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGM 130

Query: 79  AYL---HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTR- 134
            YL           V R+   +N+L       K  DF L+  +   E     +   G + 
Sbjct: 131 NYLEDRRL------VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAE---GGKV 181

Query: 135 --GYSAPEYISICVLNEKSNVFSFGAFLFELL 164
              + A E I   +   +S+V+S+G  ++EL+
Sbjct: 182 PIKWMALESILHRIYTHQSDVWSYGVTVWELM 213

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 55.1 bits (133), Expect = 4e-09
 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 14/113 (12%)

Query: 68  LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDF----LLSISIPEGET 123
           LKI      ++ ++H   P PI+ R+ K +N+L + +   K  DF     +S       +
Sbjct: 139 LKIFYQTCRAVQHMHRQKP-PIIHRDLKVENLLLSNQGTIKLCDFGSATTISHYPDYSWS 197

Query: 124 HITTDRV------IGTRGYSAPEYISI---CVLNEKSNVFSFGAFLFELLAGR 167
                 V        T  Y  PE I +     + EK ++++ G  L+ L   +
Sbjct: 198 AQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQ 250

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 55.0 bits (133), Expect = 4e-09
 Identities = 54/227 (23%), Positives = 92/227 (40%), Gaps = 40/227 (17%)

Query: 25  QMSHNHILKRIG-CCLQTPIPILVFQSVEYGTLRDCIF----GAPLP---RLKIASDIVN 76
           Q SH +I++ IG C  + PI I V + V+ G      F    GA L     L++  D   
Sbjct: 168 QYSHPNIVRLIGVCTQKQPIYI-VMELVQGGDFLT--FLRTEGARLRVKTLLQMVGDAAA 224

Query: 77  SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGE-THITTDRVIGTRG 135
            + YL     +  + R+   +N L  E+NV K  DF +S    +G        R +  + 
Sbjct: 225 GMEYLE---SKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYAASGGLRQVPVK- 280

Query: 136 YSAPEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLED 194
           ++APE ++    + +S+V+SFG  L+E  + G     +L            +  +   + 
Sbjct: 281 WTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSN---------QQTREFVEKG 331

Query: 195 KRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD 241
            R   +P P   +  P       +    +L  +C    P  RP+   
Sbjct: 332 GR---LPCP---ELCP-----DAVF---RLMEQCWAYEPGQRPSFST 364

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 54.2 bits (131), Expect = 5e-09
 Identities = 31/152 (20%), Positives = 62/152 (40%), Gaps = 20/152 (13%)

Query: 24  AQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA----PLPRL-KIASDIVNSL 78
             + H ++++  G  L  P+ + V +    G+L D +        L  L + A  +   +
Sbjct: 76  HSLDHRNLIRLYGVVLTPPMKM-VTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGM 134

Query: 79  AYL---HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTR- 134
            YL    F      + R+   +N+L    ++ K  DF L  ++P+ + H         + 
Sbjct: 135 GYLESKRF------IHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQE--HRKV 186

Query: 135 --GYSAPEYISICVLNEKSNVFSFGAFLFELL 164
              + APE +     +  S+ + FG  L+E+ 
Sbjct: 187 PFAWCAPESLKTRTFSHASDTWMFGVTLWEMF 218

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 54.2 bits (131), Expect = 6e-09
 Identities = 51/224 (22%), Positives = 87/224 (38%), Gaps = 42/224 (18%)

Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGT----LRDCIFGAPLPRL-KIASDIVNSLA 79
           Q  H HI+K IG   + P+ I + +    G     L+   +   L  L   A  +  +LA
Sbjct: 72  QFDHPHIVKLIGVITENPVWI-IMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALA 130

Query: 80  YL---HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGY 136
           YL    F      V R+   +N+L +  +  K  DF LS  + +   +  +   +  + +
Sbjct: 131 YLESKRF------VHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIK-W 183

Query: 137 SAPEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLED- 194
            APE I+       S+V+ FG  ++E+L  G      +           N  +   +E+ 
Sbjct: 184 MAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVK----------NNDVIGRIENG 233

Query: 195 KRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT 238
           +R   +P P    + P       L+    L  +C    P  RP 
Sbjct: 234 ER---LPMP---PNCP-----PTLY---SLMTKCWAYDPSRRPR 263

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 54.3 bits (130), Expect = 9e-09
 Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 9/103 (8%)

Query: 68  LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILF---NEENVAKWFDFLLSISIPEGETH 124
             + SDI ++L YLH      I+ R+ K +NI+     +  + K  D   +  + +GE  
Sbjct: 124 RTLLSDISSALRYLHE---NRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQGELC 180

Query: 125 ITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
                 +GT  Y APE +         + +SFG   FE + G 
Sbjct: 181 TE---FVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGF 220

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 54.2 bits (130), Expect = 9e-09
 Identities = 35/152 (23%), Positives = 69/152 (45%), Gaps = 20/152 (13%)

Query: 24  AQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA----PLPRL-KIASDIVNSL 78
            Q+ + +I++ IG C    + + V +    G L   + G     P+  + ++   +   +
Sbjct: 391 HQLDNPYIVRLIGVCQAEALML-VMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGM 449

Query: 79  AYL---HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTR- 134
            YL   +F      V RN   +N+L    + AK  DF LS ++   +++ T       + 
Sbjct: 450 KYLEEKNF------VHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARS--AGKW 501

Query: 135 --GYSAPEYISICVLNEKSNVFSFGAFLFELL 164
              + APE I+    + +S+V+S+G  ++E L
Sbjct: 502 PLKWYAPECINFRKFSSRSDVWSYGVTMWEAL 533

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 37/161 (22%), Positives = 67/161 (41%), Gaps = 13/161 (8%)

Query: 15  SCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI-----FGAPLPR-- 67
            CI  I    Q++H +++K     ++     +V +  + G L   I         +P   
Sbjct: 78  DCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPERT 137

Query: 68  -LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHIT 126
             K    + ++L ++H    R ++ R+ K  N+      V K  D  L        T   
Sbjct: 138 VWKYFVQLCSALEHMH---SRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAH 194

Query: 127 TDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           +  ++GT  Y +PE I     N KS+++S G  L+E+ A +
Sbjct: 195 S--LVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQ 233

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 31/152 (20%), Positives = 60/152 (39%), Gaps = 21/152 (13%)

Query: 24  AQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA----PLPRL-KIASDIVNSL 78
             + H HI++ +G C  + + + V Q +  G+L D +           L      I   +
Sbjct: 70  GSLDHAHIVRLLGLCPGSSLQL-VTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGM 128

Query: 79  AYL---HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTR- 134
            YL           V RN   +N+L    +  +  DF ++  +P  +  +        + 
Sbjct: 129 YYLEEHGM------VHRNLAARNVLLKSPSQVQVADFGVADLLPPDDKQLLYS---EAKT 179

Query: 135 --GYSAPEYISICVLNEKSNVFSFGAFLFELL 164
              + A E I       +S+V+S+G  ++EL+
Sbjct: 180 PIKWMALESIHFGKYTHQSDVWSYGVTVWELM 211

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 43/189 (22%), Positives = 75/189 (39%), Gaps = 40/189 (21%)

Query: 24  AQMSHNHILKRIGCCLQTPIPILVFQSV----------EY---GTLRDCIF--GAPLPR- 67
           A ++H ++++     L+    +    +V          EY   GTL D I        R 
Sbjct: 57  ASLNHQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRD 116

Query: 68  --LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHI 125
              ++   I+ +L+Y+H    + I+ R+ K  NI  +E    K  DF L+ ++      +
Sbjct: 117 EYWRLFRQILEALSYIHS---QGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDIL 173

Query: 126 TTDR------------VIGTRGYSAPEYIS-ICVLNEKSNVFSFGAFLFELLAG------ 166
             D              IGT  Y A E +      NEK +++S G   FE++        
Sbjct: 174 KLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIYPFSTGME 233

Query: 167 RIHIWDLLK 175
           R++I   L+
Sbjct: 234 RVNILKKLR 242

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 53.0 bits (128), Expect = 1e-08
 Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 21/151 (13%)

Query: 25  QMSHNHILKRIGCCLQTPIPI-LVFQSVEYGTLRDCIF----GAPLPR---LKIASDIVN 76
           ++SH  +++  G CL+   PI LV + +E+G L D  +             L +  D+  
Sbjct: 59  KLSHPKLVQLYGVCLEQA-PICLVTEFMEHGCLSD--YLRTQRGLFAAETLLGMCLDVCE 115

Query: 77  SLAYL---HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGT 133
            +AYL           + R+   +N L  E  V K  DF ++  + + +   +T      
Sbjct: 116 GMAYLEEACV------IHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPV 169

Query: 134 RGYSAPEYISICVLNEKSNVFSFGAFLFELL 164
           + +++PE  S    + KS+V+SFG  ++E+ 
Sbjct: 170 K-WASPEVFSFSRYSSKSDVWSFGVLMWEVF 199

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 52.6 bits (127), Expect = 2e-08
 Identities = 31/150 (20%), Positives = 66/150 (44%), Gaps = 19/150 (12%)

Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIF----GAPLPR---LKIASDIVNS 77
           ++SH  ++K  G C +     +V + +  G L +  +    G  L     L++  D+   
Sbjct: 59  KLSHPKLVKFYGVCSKEYPIYIVTEYISNGCLLN--YLRSHGKGLEPSQLLEMCYDVCEG 116

Query: 78  LAYL---HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTR 134
           +A+L    F      + R+   +N L + +   K  DF ++  + + +   +       +
Sbjct: 117 MAFLESHQF------IHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYVSSVGTKFPVK 170

Query: 135 GYSAPEYISICVLNEKSNVFSFGAFLFELL 164
            +SAPE       + KS+V++FG  ++E+ 
Sbjct: 171 -WSAPEVFHYFKYSSKSDVWAFGILMWEVF 199

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 52.3 bits (126), Expect = 3e-08
 Identities = 52/233 (22%), Positives = 88/233 (37%), Gaps = 55/233 (23%)

Query: 25  QMSHNHILKRIGCCLQTPIPIL-VFQSVEYGTLRDCIF---GAPLPRLK----IASDIVN 76
             SH ++L  +G CL++    L V   +++G LR+  F       P +K        +  
Sbjct: 82  DFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRN--FIRNETHNPTVKDLIGFGLQVAK 139

Query: 77  SLAYL---HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGT 133
            + YL    F      V R+   +N + +E+   K  DF L+  + + E       V   
Sbjct: 140 GMKYLASKKF------VHRDLAARNCMLDEKFTVKVADFGLARDMYDKE----YYSVHNK 189

Query: 134 RGYS------APEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNE 186
            G        A E +       KS+V+SFG  L+EL+  G     D+             
Sbjct: 190 TGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVN----------TF 239

Query: 187 YLKNYLED-KRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT 238
            +  YL   +R   +  P   +  P       L+   ++ L+C +   E RP+
Sbjct: 240 DITVYLLQGRR---LLQP---EYCP-----DPLY---EVMLKCWHPKAEMRPS 278

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 52.5 bits (126), Expect = 3e-08
 Identities = 28/123 (22%), Positives = 47/123 (38%), Gaps = 25/123 (20%)

Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENV-------------AKWFDFLLS 115
            +   I + +A+LH      I+ R+ K QNIL +  +                  DF L 
Sbjct: 119 SLLRQIASGVAHLHS---LKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLC 175

Query: 116 ISIPEGETHITTDR--VIGTRGYSAPEYIS-------ICVLNEKSNVFSFGAFLFELLAG 166
             +  G++   T+     GT G+ APE +           L    ++FS G   + +L+ 
Sbjct: 176 KKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSK 235

Query: 167 RIH 169
             H
Sbjct: 236 GKH 238

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 52.4 bits (126), Expect = 3e-08
 Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 18/106 (16%)

Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILF---NEENVAKWFDFLLSISIPEGETHI 125
            I   +++ + YLH      IV R+ K +N+L     ++ + K  DF LS      +   
Sbjct: 140 VIIKQVLSGVTYLHK---HNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQKKMK 196

Query: 126 TTDRVIGTRGYSAPEYISICVL----NEKSNVFSFGAFLFELLAGR 167
                +GT  Y APE     VL    +EK +V+S G  LF LLAG 
Sbjct: 197 E---RLGTAYYIAPE-----VLRKKYDEKCDVWSIGVILFILLAGY 234

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 34/152 (22%), Positives = 71/152 (46%), Gaps = 22/152 (14%)

Query: 25  QMSHNHILKRIGCCLQTPIPI-LVFQSVEYGTLRDCIF-----GAPLPR---LKIASDIV 75
           ++ H ++++ +G C + P P  ++ + + YG L D  +        +     L +A+ I 
Sbjct: 65  EIKHPNLVQLLGVCTREP-PFYIITEFMTYGNLLD--YLRECNRQEVSAVVLLYMATQIS 121

Query: 76  NSLAYL---HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIG 132
           +++ YL   +F      + R+   +N L  E ++ K  DF LS  +              
Sbjct: 122 SAMEYLEKKNF------IHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFP 175

Query: 133 TRGYSAPEYISICVLNEKSNVFSFGAFLFELL 164
            + ++APE ++    + KS+V++FG  L+E+ 
Sbjct: 176 IK-WTAPESLAYNKFSIKSDVWAFGVLLWEIA 206

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 51.8 bits (125), Expect = 4e-08
 Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 16/148 (10%)

Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA----PLPRL-KIASDIVNSLA 79
            + H HI+K IG   + P  I + +   YG L   +        +  L   +  I  ++A
Sbjct: 69  NLDHPHIVKLIGIIEEEPTWI-IMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMA 127

Query: 80  YL---HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGY 136
           YL   +       V R+   +NIL       K  DF LS  I + + +  +   +  + +
Sbjct: 128 YLESINC------VHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYYKASVTRLPIK-W 180

Query: 137 SAPEYISICVLNEKSNVFSFGAFLFELL 164
            +PE I+       S+V+ F   ++E+L
Sbjct: 181 MSPESINFRRFTTASDVWMFAVCMWEIL 208

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 52.0 bits (125), Expect = 4e-08
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 18/106 (16%)

Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILF---NEENVAKWFDFLLSISIPEGETHI 125
           +I   +++ + Y+H      IV R+ K +N+L    +++   +  DF LS      +   
Sbjct: 130 RIIRQVLSGITYMHK---NKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMK 186

Query: 126 TTDRVIGTRGYSAPEYISICVL----NEKSNVFSFGAFLFELLAGR 167
                IGT  Y APE     VL    +EK +V+S G  L+ LL+G 
Sbjct: 187 D---KIGTAYYIAPE-----VLHGTYDEKCDVWSTGVILYILLSGC 224

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 51.4 bits (124), Expect = 4e-08
 Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 7/99 (7%)

Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTD 128
               ++ ++L Y H    R ++ R+ K +N+L   +   K  DF  S+  P      T  
Sbjct: 118 TFMEELADALHYCH---ERKVIHRDIKPENLLMGYKGELKIADFGWSVHAPSLRRR-TM- 172

Query: 129 RVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
              GT  Y  PE I     +EK +++  G   +E L G 
Sbjct: 173 --CGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGM 209

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 52.0 bits (125), Expect = 5e-08
 Identities = 47/229 (20%), Positives = 94/229 (41%), Gaps = 53/229 (23%)

Query: 25  QMSHNHILKRIGCCLQTPIPI-LVFQSVEYGTLRDCIF-----GAPLPR---LKIASDIV 75
           Q+ H+++++ +G  ++    + +V + +  G+L D  +      + L     LK + D+ 
Sbjct: 242 QLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVD--YLRSRGRSVLGGDCLLKFSLDVC 299

Query: 76  NSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTR- 134
            ++ YL        V R+   +N+L +E+NVAK  DF L+      +           + 
Sbjct: 300 EAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQD--------TGKL 348

Query: 135 --GYSAPEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNY 191
              ++APE +     + KS+V+SFG  L+E+ + GR+    +            + +   
Sbjct: 349 PVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP----------LKDVVPR 398

Query: 192 LEDKRFTG--IPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT 238
           +E     G  + AP      P       ++    +   C +     RPT
Sbjct: 399 VEK----GYKMDAP---DGCP-----PAVY---DVMKNCWHLDAATRPT 432

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 52.1 bits (125), Expect = 5e-08
 Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 16/102 (15%)

Query: 71  ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRV 130
           A++I   L  LH      IV R+ K +NIL ++    +  D  L++ +PEG+T     RV
Sbjct: 292 AAEICCGLEDLH---RERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQT--IKGRV 346

Query: 131 IGTRGYSAPEYISICVLNEKS---NV--FSFGAFLFELLAGR 167
            GT GY APE     V+  +    +   ++ G  L+E++AG+
Sbjct: 347 -GTVGYMAPE-----VVKNERYTFSPDWWALGCLLYEMIAGQ 382

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 51.5 bits (124), Expect = 5e-08
 Identities = 50/230 (21%), Positives = 81/230 (35%), Gaps = 49/230 (21%)

Query: 25  QMSHNHILKRIGCCLQT-PIPILVFQSVEYGTL----RDCIFGAPLPRL-KIASDIVNSL 78
            ++H ++L  IG  L    +P ++   + +G L    R       +  L      +   +
Sbjct: 78  GLNHPNVLALIGIMLPPEGLPHVLLPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGM 137

Query: 79  AYL---HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIG--- 132
            YL    F      V R+   +N + +E    K  DF L+  I + E +           
Sbjct: 138 EYLAEQKF------VHRDLAARNCMLDESFTVKVADFGLARDILDREYYSVQQHRHARLP 191

Query: 133 ---TRGYSAPEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYL 188
              T    A E +       KS+V+SFG  L+ELL  G      +              L
Sbjct: 192 VKWT----ALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHID----------PFDL 237

Query: 189 KNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT 238
            ++L   R   +P P   +  P       L+   Q+  +C    P  RPT
Sbjct: 238 THFLAQGRR--LPQP---EYCP-----DSLY---QVMQQCWEADPAVRPT 274

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 51.1 bits (123), Expect = 6e-08
 Identities = 33/151 (21%), Positives = 67/151 (44%), Gaps = 21/151 (13%)

Query: 25  QMSHNHILKRIGCCLQTPIPI-LVFQSVEYGTLRDCIF----GAPLPR---LKIASDIVN 76
            +SH  +++  G C +   PI ++ + +  G L +  +             L++  D+  
Sbjct: 75  NLSHEKLVQLYGVCTKQR-PIFIITEYMANGCLLN--YLREMRHRFQTQQLLEMCKDVCE 131

Query: 77  SLAYL---HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGT 133
           ++ YL    F      + R+   +N L N++ V K  DF LS  + + E   +       
Sbjct: 132 AMEYLESKQF------LHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPV 185

Query: 134 RGYSAPEYISICVLNEKSNVFSFGAFLFELL 164
           R +S PE +     + KS++++FG  ++E+ 
Sbjct: 186 R-WSPPEVLMYSKFSSKSDIWAFGVLMWEIY 215

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 51.3 bits (123), Expect = 7e-08
 Identities = 49/233 (21%), Positives = 88/233 (37%), Gaps = 55/233 (23%)

Query: 25  QMSHNHILKRIGCCLQTPIPIL-VFQSVEYGTLRDCIF---GAPLPRLK----IASDIVN 76
             SH ++L  +G CL++    L V   +++G LR+  F       P +K        +  
Sbjct: 146 DFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRN--FIRNETHNPTVKDLIGFGLQVAK 203

Query: 77  SLAYL---HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIG- 132
            + +L    F      V R+   +N + +E+   K  DF L+  + + E     ++    
Sbjct: 204 GMKFLASKKF------VHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAK 257

Query: 133 -----TRGYSAPEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNE 186
                     A E +       KS+V+SFG  L+EL+  G     D+             
Sbjct: 258 LPVKWM----ALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVN----------TF 303

Query: 187 YLKNYLED-KRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT 238
            +  YL   +R   +  P   +  P       L+   ++ L+C +   E RP+
Sbjct: 304 DITVYLLQGRR---LLQP---EYCP-----DPLY---EVMLKCWHPKAEMRPS 342

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 51.0 bits (122), Expect = 8e-08
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 6/99 (6%)

Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTD 128
           K++  ++  L YL       I+ R+ K  NIL N     K  DF   +S    ++   + 
Sbjct: 135 KVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDF--GVSGQLIDSMANS- 189

Query: 129 RVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
             +GTR Y +PE +     + +S+++S G  L E+  GR
Sbjct: 190 -FVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGR 227

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 50.7 bits (122), Expect = 9e-08
 Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 7/99 (7%)

Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTD 128
              +++ N+L+Y H    + ++ R+ K +N+L       K  DF  S+  P         
Sbjct: 113 TYITELANALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWSVHAP-SSRRTDL- 167

Query: 129 RVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
              GT  Y  PE I   + +EK +++S G   +E L G+
Sbjct: 168 --CGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 204

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 8/101 (7%)

Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTD 128
            I   ++NS +Y+H    + I  R+ K  NIL ++    K  DF  S  + + +    + 
Sbjct: 155 CIIKSVLNSFSYIHN--EKNICHRDVKPSNILMDKNGRVKLSDFGESEYMVDKKIK-GS- 210

Query: 129 RVIGTRGYSAPEYIS--ICVLNEKSNVFSFGAFLFELLAGR 167
              GT  +  PE+ S        K +++S G  L+ +    
Sbjct: 211 --RGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNV 249

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 18/106 (16%)

Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILF---NEENVAKWFDFLLSISIPEGETHI 125
           +I   + + + Y+H      IV R+ K +NIL     ++   K  DF LS    +     
Sbjct: 125 RIIKQVFSGITYMHK---HNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMK 181

Query: 126 TTDRVIGTRGYSAPEYISICVL----NEKSNVFSFGAFLFELLAGR 167
                IGT  Y APE     VL    +EK +V+S G  L+ LL+G 
Sbjct: 182 D---RIGTAYYIAPE-----VLRGTYDEKCDVWSAGVILYILLSGT 219

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 50.7 bits (121), Expect = 2e-07
 Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 18/103 (17%)

Query: 71  ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRV 130
           A++I+  L ++H    R +V R+ K  NIL +E    +  D  L+    + + H     V
Sbjct: 298 AAEIILGLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPH---ASV 351

Query: 131 IGTRGYSAPEYISICVLNEKSNV------FSFGAFLFELLAGR 167
            GT GY APE     VL +          FS G  LF+LL G 
Sbjct: 352 -GTHGYMAPE-----VLQKGVAYDSSADWFSLGCMLFKLLRGH 388

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 34/101 (33%), Positives = 45/101 (44%), Gaps = 18/101 (17%)

Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILF---NEENVAKWFDFLLSISIPEGETHITTDRV 130
           I++ + YLH      IV R+ K +NIL    N     K  DF LS    +          
Sbjct: 155 ILSGICYLHK---HNIVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDYKLRD---R 208

Query: 131 IGTRGYSAPEYISICVL----NEKSNVFSFGAFLFELLAGR 167
           +GT  Y APE     VL    NEK +V+S G  ++ LL G 
Sbjct: 209 LGTAYYIAPE-----VLKKKYNEKCDVWSCGVIMYILLCGY 244

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 15/110 (13%)

Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTD 128
               +++ ++  +H      IV  + K  N L  +  + K  DF ++  +    T +  D
Sbjct: 131 SYWKNMLEAVHTIHQ---HGIVHSDLKPANFLIVDGML-KLIDFGIANQMQPDTTSVVKD 186

Query: 129 RVIGTRGYSAPEYI-----------SICVLNEKSNVFSFGAFLFELLAGR 167
             +GT  Y  PE I           S   ++ KS+V+S G  L+ +  G+
Sbjct: 187 SQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGK 236

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 15/110 (13%)

Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTD 128
               +++ ++  +H      IV  + K  N L  +  + K  DF ++  +    T +  D
Sbjct: 159 SYWKNMLEAVHTIH---QHGIVHSDLKPANFLIVDGML-KLIDFGIANQMQPDTTSVVKD 214

Query: 129 RVIGTRGYSAPEYIS-----------ICVLNEKSNVFSFGAFLFELLAGR 167
             +G   Y  PE I               ++ KS+V+S G  L+ +  G+
Sbjct: 215 SQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGK 264

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 19/118 (16%)

Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGE--THIT 126
           KIA  IV +L +LH      ++ R+ K  N+L N     K  DF +S     G     + 
Sbjct: 113 KIAVSIVKALEHLHSK--LSVIHRDVKPSNVLINALGQVKMCDFGIS-----GYLVDDVA 165

Query: 127 TDRVIGTRGYSAPEYISICVL----NEKSNVFSFGAFLFELLAGR------IHIWDLL 174
            D   G + Y APE I+  +     + KS+++S G  + EL   R         +  L
Sbjct: 166 KDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQL 223

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 15/110 (13%)

Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTD 128
               +++ ++  +H      IV  + K  N L  +  + K  DF ++  +    T +  D
Sbjct: 112 SYWKNMLEAVHTIHQ---HGIVHSDLKPANFLIVDGML-KLIDFGIANQMQPDTTSVVKD 167

Query: 129 RVIGTRGYSAPEYI-----------SICVLNEKSNVFSFGAFLFELLAGR 167
             +GT  Y  PE I           S   ++ KS+V+S G  L+ +  G+
Sbjct: 168 SQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGK 217

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 19/105 (18%)

Query: 71  ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRV 130
             ++V +L YL     + I+ R+ K  NIL +E       DF ++  +P      T   +
Sbjct: 121 ICELVMALDYLQ---NQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRETQITT---M 174

Query: 131 IGTRGYSAPEYISICVLNEKSNV--------FSFGAFLFELLAGR 167
            GT+ Y APE     + + +           +S G   +ELL GR
Sbjct: 175 AGTKPYMAPE-----MFSSRKGAGYSFAVDWWSLGVTAYELLRGR 214

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 48.8 bits (117), Expect = 4e-07
 Identities = 33/159 (20%), Positives = 68/159 (42%), Gaps = 27/159 (16%)

Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRD-----------CIFGAPLPR---LKI 70
           + + +H+++ +G   Q    +++ + +  G L+                AP      +++
Sbjct: 84  EFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQM 143

Query: 71  ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRV 130
           A +I + +AYL+       V R+   +N +  E+   K  DF ++  I E + +      
Sbjct: 144 AGEIADGMAYLN---ANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYY-----R 195

Query: 131 IGTRGY-----SAPEYISICVLNEKSNVFSFGAFLFELL 164
            G +G       +PE +   V    S+V+SFG  L+E+ 
Sbjct: 196 KGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIA 234

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 49.0 bits (117), Expect = 5e-07
 Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 15/102 (14%)

Query: 71  ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRV 130
            + IV+ L +LH    R I+ R+ K +N+L +++   +  D  L++ +  G+T   T   
Sbjct: 295 TAQIVSGLEHLH---QRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQT--KTKGY 349

Query: 131 IGTRGYSAPEYISICVLNEKS---NV--FSFGAFLFELLAGR 167
            GT G+ APE     +L  +    +V  F+ G  L+E++A R
Sbjct: 350 AGTPGFMAPE-----LLLGEEYDFSVDYFALGVTLYEMIAAR 386

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 48.7 bits (116), Expect = 5e-07
 Identities = 33/106 (31%), Positives = 46/106 (43%), Gaps = 11/106 (10%)

Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILF--NEENVAKWFDFLLSISIP---EGET 123
            I   I ++L YLH    + I  R+ K +N LF  N+    K  DF LS        GE 
Sbjct: 172 NIMRQIFSALHYLHN---QGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEY 228

Query: 124 HITTDRVIGTRGYSAPEYISICVL--NEKSNVFSFGAFLFELLAGR 167
           +  T +  GT  + APE ++        K + +S G  L  LL G 
Sbjct: 229 YGMTTKA-GTPYFVAPEVLNTTNESYGPKCDAWSAGVLLHLLLMGA 273

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 48.4 bits (116), Expect = 6e-07
 Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 12/104 (11%)

Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTD 128
           KI   ++  +  LH      IV R+ K +NIL +++   K  DF  S  +  GE      
Sbjct: 128 KIMRALLEVICALHK---LNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLRE-- 182

Query: 129 RVIGTRGYSAPEYISICVLNEKSN------VFSFGAFLFELLAG 166
            V GT  Y APE I   + +          ++S G  ++ LLAG
Sbjct: 183 -VCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAG 225

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 48.1 bits (115), Expect = 8e-07
 Identities = 32/106 (30%), Positives = 45/106 (42%), Gaps = 14/106 (13%)

Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGE--THIT 126
           K+   IV +L YL       ++ R+ K  NIL +E    K  DF +S     G       
Sbjct: 128 KMTVAIVKALYYLKEK--HGVIHRDVKPSNILLDERGQIKLCDFGIS-----GRLVDDKA 180

Query: 127 TDRVIGTRGYSAPEYISICVLNE-----KSNVFSFGAFLFELLAGR 167
            DR  G   Y APE I      +     +++V+S G  L EL  G+
Sbjct: 181 KDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQ 226

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 48.1 bits (115), Expect = 8e-07
 Identities = 52/232 (22%), Positives = 91/232 (39%), Gaps = 53/232 (22%)

Query: 24  AQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIF----GAPLPR---LKIASDIVN 76
            Q  H +I++  G   ++   ++V + +E G+L    F     A       + +   I +
Sbjct: 101 GQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDS--FLRKHDAQFTVIQLVGMLRGIAS 158

Query: 77  SLAYL---HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGT 133
            + YL    +      V R+   +NIL N   V K  DF L   + +       +    T
Sbjct: 159 GMKYLSDMGY------VHRDLAARNILINSNLVCKVSDFGLGRVLEDDP-----EAAYTT 207

Query: 134 RG------YSAPEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNE 186
           RG      +++PE I+       S+V+S+G  L+E+++ G    W++            +
Sbjct: 208 RGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSN---------QD 258

Query: 187 YLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT 238
            +K   E  R   +P P    D P       L+   QL L+C      +RP 
Sbjct: 259 VIKAVDEGYR---LPPP---MDCP-----AALY---QLMLDCWQKDRNNRPK 296

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 47.9 bits (114), Expect = 9e-07
 Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 18/112 (16%)

Query: 68  LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILF----NEENVAKWFDFLLSISIPEGET 123
           L +  D+V  + +L       IV RN K  NI+     + ++V K  DF  +  + + E 
Sbjct: 115 LIVLRDVVGGMNHLRE---NGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQ 171

Query: 124 HITTDRVIGTRGYSAPEYISICVL--------NEKSNVFSFGAFLFELLAGR 167
            ++   + GT  Y  P+     VL            +++S G   +    G 
Sbjct: 172 FVS---LYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGS 220

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 47.7 bits (114), Expect = 9e-07
 Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 12/113 (10%)

Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILF---NEENVAKWFDFLLSISIPEGETHITTDRV 130
           I+ ++AYLH      IV R+ K +N+L+     +   K  DF LS  +       T   V
Sbjct: 157 ILEAVAYLHE---NGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVLMKT---V 210

Query: 131 IGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCF 183
            GT GY APE +  C    + +++S G   + LL G    +D   +  D   F
Sbjct: 211 CGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYD---ERGDQFMF 260

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 35/161 (21%), Positives = 60/161 (37%), Gaps = 33/161 (20%)

Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRD--------CIFGAPLPR---LKIASD 73
           + +H +I++ IG  LQ+    ++ + +  G L+             + L     L +A D
Sbjct: 130 KFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARD 189

Query: 74  IVNSLAYL---HFGFPRPIVLRNFKTQNILFN---EENVAKWFDFLLSISIPEGETHITT 127
           I     YL   HF      + R+   +N L        VAK  DF ++  I     +   
Sbjct: 190 IACGCQYLEENHF------IHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAGYY--- 240

Query: 128 DRVIGTRGYS-----APEYISICVLNEKSNVFSFGAFLFEL 163
               G           PE     +   K++ +SFG  L+E+
Sbjct: 241 --RKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEI 279

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 36/154 (23%), Positives = 64/154 (41%), Gaps = 18/154 (11%)

Query: 25  QMSHNHILKRIGCCLQTPIPI-LVFQSVEYGTLRDCIF--GAPLPRL--KIASD----IV 75
            + H HI++ +     +   + +VF+ ++   L   I             +AS     I+
Sbjct: 82  MLKHPHIVELLETY-SSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQIL 140

Query: 76  NSLAYLHFGFPRPIVLRNFKTQNILF-NEENVA--KWFDFLLSISIPEGETHITTDRVIG 132
            +L Y H      I+ R+ K   +L  ++EN A  K   F ++I + E          +G
Sbjct: 141 EALRYCHD---NNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESGLVAGG--RVG 195

Query: 133 TRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
           T  + APE +      +  +V+  G  LF LL+G
Sbjct: 196 TPHFMAPEVVKREPYGKPVDVWGCGVILFILLSG 229

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 18/112 (16%)

Query: 68  LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILF----NEENVAKWFDFLLSISIPEGET 123
           L +  D+V  + +L       IV RN K  NI+     + ++V K  DF  +  + + E 
Sbjct: 115 LIVLRDVVGGMNHLR---ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQ 171

Query: 124 HITTDRVIGTRGYSAPEYISICVL--------NEKSNVFSFGAFLFELLAGR 167
            ++   + GT  Y  P+     VL            +++S G   +    G 
Sbjct: 172 FVS---LYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGS 220

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 47.2 bits (113), Expect = 1e-06
 Identities = 37/160 (23%), Positives = 73/160 (45%), Gaps = 41/160 (25%)

Query: 25  QMSHNHILKRIGCCLQTPIPI-LVFQSVEYGTLRDCIF-----GAPLPR---LKIASDIV 75
           Q+ H+++++ +G  ++    + +V + +  G+L D  +      + L     LK + D+ 
Sbjct: 70  QLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVD--YLRSRGRSVLGGDCLLKFSLDVC 127

Query: 76  NSLAYL---HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIG 132
            ++ YL   +F      V R+   +N+L +E+NVAK  DF L+             +   
Sbjct: 128 EAMEYLEGNNF------VHRDLAARNVLVSEDNVAKVSDFGLT-------------KEAS 168

Query: 133 TRGY--------SAPEYISICVLNEKSNVFSFGAFLFELL 164
           +           +APE +     + KS+V+SFG  L+E+ 
Sbjct: 169 STQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIY 208

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 12/104 (11%)

Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTD 128
            I   ++ ++++LH      IV R+ K +NIL ++    +  DF  S  +  GE      
Sbjct: 204 SIMRSLLEAVSFLHA---NNIVHRDLKPENILLDDNMQIRLSDFGFSCHLEPGEKLRE-- 258

Query: 129 RVIGTRGYSAPEYISICVLNEKSN------VFSFGAFLFELLAG 166
            + GT GY APE +   +            +++ G  LF LLAG
Sbjct: 259 -LCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAG 301

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 35/161 (21%), Positives = 60/161 (37%), Gaps = 33/161 (20%)

Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRD--------CIFGAPLPR---LKIASD 73
           + +H +I++ IG  LQ+    ++ + +  G L+             + L     L +A D
Sbjct: 89  KFNHQNIVRCIGVSLQSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARD 148

Query: 74  IVNSLAYL---HFGFPRPIVLRNFKTQNIL---FNEENVAKWFDFLLSISIPEGETHITT 127
           I     YL   HF      + R+   +N L        VAK  DF ++  I     +   
Sbjct: 149 IACGCQYLEENHF------IHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYY--- 199

Query: 128 DRVIGTRGYS-----APEYISICVLNEKSNVFSFGAFLFEL 163
               G           PE     +   K++ +SFG  L+E+
Sbjct: 200 --RKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEI 238

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 34/164 (20%), Positives = 66/164 (40%), Gaps = 35/164 (21%)

Query: 25  QMSHNHILKRIGCCLQ------TPIPILVFQSVEYGTLRD-------CIFGAPLPR---L 68
           +  H H+ K +G  L+       PIP+++   +++G L               LP    +
Sbjct: 81  EFDHPHVAKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLV 140

Query: 69  KIASDIVNSLAYL---HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHI 125
           +   DI   + YL   +F      + R+   +N +  E+      DF LS  I  G+ + 
Sbjct: 141 RFMVDIACGMEYLSSRNF------IHRDLAARNCMLAEDMTVCVADFGLSRKIYSGDYY- 193

Query: 126 TTDRVIGTRG-----YSAPEYISICVLNEKSNVFSFGAFLFELL 164
                 G        + A E ++  +    S+V++FG  ++E++
Sbjct: 194 ----RQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIM 233

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 18/100 (18%)

Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILF---NEENVAKWFDFLLSISIPEGETHITTDRV 130
           + + + Y+H      IV R+ K +NIL     ++   K  DF LS    +          
Sbjct: 130 VFSGITYMHK---HNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKD---R 183

Query: 131 IGTRGYSAPEYISICVL----NEKSNVFSFGAFLFELLAG 166
           IGT  Y APE     VL    +EK +V+S G  L+ LL+G
Sbjct: 184 IGTAYYIAPE-----VLRGTYDEKCDVWSAGVILYILLSG 218

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 46.4 bits (111), Expect = 2e-06
 Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 18/100 (18%)

Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILF---NEENVAKWFDFLLSISIPEGETHITTDRV 130
           +++++AY H      +  R+ K +N LF   + ++  K  DF L+     G+   T    
Sbjct: 115 VLSAVAYCHK---LNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGKMMRT---K 168

Query: 131 IGTRGYSAPEYISICVL----NEKSNVFSFGAFLFELLAG 166
           +GT  Y +P+     VL      + + +S G  ++ LL G
Sbjct: 169 VGTPYYVSPQ-----VLEGLYGPECDEWSAGVMMYVLLCG 203

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 35/158 (22%), Positives = 63/158 (39%), Gaps = 31/158 (19%)

Query: 24  AQMSHNHILKRIGCCLQTPIPIL-VFQSVEYGTLRDCIF----GAPLPR---LKIASDIV 75
            Q  H +I++  G   +     + V + +E G+L    F             + +   + 
Sbjct: 105 GQFDHPNIIRLEGVVTRGR-LAMIVTEYMENGSLDT--FLRTHDGQFTIMQLVGMLRGVG 161

Query: 76  NSLAYL---HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIG 132
             + YL    +      V R+   +N+L +   V K  DF LS  + +       D    
Sbjct: 162 AGMRYLSDLGY------VHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDP-----DAAYT 210

Query: 133 TRG------YSAPEYISICVLNEKSNVFSFGAFLFELL 164
           T G      ++APE I+    +  S+V+SFG  ++E+L
Sbjct: 211 TTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVL 248

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 36/163 (22%), Positives = 68/163 (41%), Gaps = 34/163 (20%)

Query: 25  QMSHNHILKRIGCCLQT-----PIPILVFQSVEYGTL-------RDCIFGAPLPR---LK 69
             SH ++++ +G C++      P P+++   ++YG L       R       +P    LK
Sbjct: 92  DFSHPNVIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLK 151

Query: 70  IASDIVNSLAYL---HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHIT 126
              DI   + YL   +F      + R+   +N +  ++      DF LS  I  G+ +  
Sbjct: 152 FMVDIALGMEYLSNRNF------LHRDLAARNCMLRDDMTVCVADFGLSKKIYSGDYY-- 203

Query: 127 TDRVIGTRG-----YSAPEYISICVLNEKSNVFSFGAFLFELL 164
                G        + A E ++  V   KS+V++FG  ++E+ 
Sbjct: 204 ---RQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIA 243

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 9/96 (9%)

Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILF--NEENVA-KWFDFLLSISIPEGETHITTDRV 130
           I+ S+AY H      IV RN K +N+L     +  A K  DF L+I + + E        
Sbjct: 137 ILESIAYCHS---NGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHG---F 190

Query: 131 IGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
            GT GY +PE +     ++  ++++ G  L+ LL G
Sbjct: 191 AGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVG 226

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 46.0 bits (110), Expect = 3e-06
 Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 9/96 (9%)

Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILF--NEENVA-KWFDFLLSISIPEGETHITTDRV 130
           I+ S+AY H      IV RN K +N+L     +  A K  DF L+I + + E        
Sbjct: 114 ILESIAYCHS---NGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHG---F 167

Query: 131 IGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
            GT GY +PE +     ++  ++++ G  L+ LL G
Sbjct: 168 AGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVG 203

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 40/164 (24%), Positives = 67/164 (40%), Gaps = 30/164 (18%)

Query: 24  AQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRD----------------CIFGAPLPR 67
             + H HI++  G C +    ++VF+ + +G L                   +   PL  
Sbjct: 98  TMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGL 157

Query: 68  ---LKIASDIVNSLAYL---HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEG 121
              L +AS +   + YL   HF      V R+  T+N L  +  V K  DF +S  I   
Sbjct: 158 GQLLAVASQVAAGMVYLAGLHF------VHRDLATRNCLVGQGLVVKIGDFGMSRDIYST 211

Query: 122 E-THITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELL 164
           +   +    ++  R +  PE I       +S+V+SFG  L+E+ 
Sbjct: 212 DYYRVGGRTMLPIR-WMPPESILYRKFTTESDVWSFGVVLWEIF 254

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 45.7 bits (109), Expect = 5e-06
 Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 13/130 (10%)

Query: 46  LVFQSVEYGTLRDCIFGAPLP----RLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILF 101
           +VF+ V  G + +     PL     R     D++  + YLH+   + I+ R+ K  N+L 
Sbjct: 115 MVFELVNQGPVMEVPTLKPLSEDQAR-FYFQDLIKGIEYLHY---QKIIHRDIKPSNLLV 170

Query: 102 NEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLN---EKSNVFSFGA 158
            E+   K  DF +S      +  ++    +GT  + APE +S        +  +V++ G 
Sbjct: 171 GEDGHIKIADFGVSNEFKGSDALLSN--TVGTPAFMAPESLSETRKIFSGKALDVWAMGV 228

Query: 159 FLFELLAGRI 168
            L+  + G+ 
Sbjct: 229 TLYCFVFGQC 238

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 45.7 bits (109), Expect = 5e-06
 Identities = 38/158 (24%), Positives = 65/158 (41%), Gaps = 28/158 (17%)

Query: 25  QMSHNHILKRIGCCLQTPIPI-LVFQSVEYGTLRDCIFGAPLPR--------LKIASDIV 75
            + H +I+K      +    + +V ++ E G L + I  A             ++   ++
Sbjct: 76  SLDHPNIIKIFEVF-EDYHNMYIVMETCEGGELLERIVSAQARGKALSEGYVAELMKQMM 134

Query: 76  NSLAYLHFGFPRPIVLRNFKTQNILF---NEENVAKWFDFLLSISIPEGETHITTDRVIG 132
           N+LAY H    + +V ++ K +NILF   +  +  K  DF L+      E         G
Sbjct: 135 NALAYFHS---QHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDEHSTN---AAG 188

Query: 133 TRGYSAPEYISICVLN----EKSNVFSFGAFLFELLAG 166
           T  Y APE     V       K +++S G  ++ LL G
Sbjct: 189 TALYMAPE-----VFKRDVTFKCDIWSAGVVMYFLLTG 221

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 45.0 bits (107), Expect = 7e-06
 Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 25/155 (16%)

Query: 24  AQMSHNHILKRIGCCLQTPIPILVFQSVEYGTL----RDCIFGAPLPRL-KIASDIVNSL 78
            Q SH++I++  G   +    +++ + +E G L    R+      + +L  +   I   +
Sbjct: 101 GQFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGM 160

Query: 79  AYL---HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRG 135
            YL   ++      V R+   +NIL N   V K  DF LS  + +       +    T G
Sbjct: 161 KYLANMNY------VHRDLAARNILVNSNLVCKVSDFGLSRVLEDDP-----EATYTTSG 209

Query: 136 ------YSAPEYISICVLNEKSNVFSFGAFLFELL 164
                 ++APE IS       S+V+SFG  ++E++
Sbjct: 210 GKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVM 244

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 45.0 bits (107), Expect = 7e-06
 Identities = 31/164 (18%), Positives = 58/164 (35%), Gaps = 43/164 (26%)

Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI--FGAPLPR---LKIASDIVNSLA 79
           ++SH H++   G C+     ILV + V++G+L   +      +     L++A  +  ++ 
Sbjct: 68  KLSHKHLVLNYGVCVCGDENILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMH 127

Query: 80  YL---HFGFPRPIVLRNFKTQNIL--------FNEENVAKWFDFLLSISIPEGETHITTD 128
           +L           +  N   +NIL               K  D  +S             
Sbjct: 128 FLEENTL------IHGNVCAKNILLIREEDRKTGNPPFIKLSDPGIS------------- 168

Query: 129 RVIGTRGY-------SAPEYISIC-VLNEKSNVFSFGAFLFELL 164
             +  +           PE I     LN  ++ +SFG  L+E+ 
Sbjct: 169 ITVLPKDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEIC 212

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 45.4 bits (108), Expect = 7e-06
 Identities = 35/165 (21%), Positives = 61/165 (36%), Gaps = 39/165 (23%)

Query: 27  SHNHILKRIGCCLQTPIPILVFQSVEYGTLRD-----------------CIFGAPLPR-- 67
            H +I+  +G C Q     ++ +    G LR+                       L    
Sbjct: 133 KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKD 192

Query: 68  -LKIASDIVNSLAYL---HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGET 123
            +  A  +   + YL           + R+   +N+L  E+NV K  DF L+  I   + 
Sbjct: 193 LVSCAYQVARGMEYLASKKC------IHRDLAARNVLVTEDNVMKIADFGLARDIHHIDY 246

Query: 124 HITTDRVIGTRG-----YSAPEYISICVLNEKSNVFSFGAFLFEL 163
           +        T G     + APE +   +   +S+V+SFG  L+E+
Sbjct: 247 Y-----KKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEI 286

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 45.0 bits (107), Expect = 8e-06
 Identities = 33/174 (18%), Positives = 59/174 (33%), Gaps = 56/174 (32%)

Query: 27  SHNHILKRIGCCLQTPIPILV-FQSVEYGTLRD-----------CIFGAPLPR------- 67
            H +++  +G C +   P++V  +  ++G L                             
Sbjct: 89  HHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLE 148

Query: 68  --LKIASDIVNSLAYL---HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGE 122
             +  +  +   + +L           + R+   +NIL +E+NV K  DF L+       
Sbjct: 149 HLICYSFQVAKGMEFLASRKC------IHRDLAARNILLSEKNVVKICDFGLA------- 195

Query: 123 THITTDRVIGTRGY-------------SAPEYISICVLNEKSNVFSFGAFLFEL 163
                 R I                   APE I   V   +S+V+SFG  L+E+
Sbjct: 196 ------RDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEI 243

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 45.0 bits (107), Expect = 9e-06
 Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 8/96 (8%)

Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILF--NEENVA-KWFDFLLSISIPEGETHITTDRV 130
           I+ ++ + H      +V RN K +N+L     +  A K  DF L+I +   +        
Sbjct: 119 ILEAVLHCHQ---MGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFG--F 173

Query: 131 IGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
            GT GY +PE +      +  ++++ G  L+ LL G
Sbjct: 174 AGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVG 209

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 35/105 (33%), Positives = 46/105 (43%), Gaps = 13/105 (12%)

Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGE--THIT 126
           KI    V +L +L       I+ R+ K  NIL +     K  DF   IS   G+    I 
Sbjct: 129 KITLATVKALNHLKEN--LKIIHRDIKPSNILLDRSGNIKLCDF--GIS---GQLVDSIA 181

Query: 127 TDRVIGTRGYSAPEYISICVLNE----KSNVFSFGAFLFELLAGR 167
             R  G R Y APE I      +    +S+V+S G  L+EL  GR
Sbjct: 182 KTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGR 226

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 18/106 (16%)

Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILF---NEENVAKWFDFLLSISIPEGETHI 125
            I   +V++++++H      +V R+ K +N+LF   N+    K  DF  +   P     +
Sbjct: 110 YIMRKLVSAVSHMHD---VGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPL 166

Query: 126 TTDRVIGTRGYSAPEYISICVL-----NEKSNVFSFGAFLFELLAG 166
            T     T  Y+APE     +L     +E  +++S G  L+ +L+G
Sbjct: 167 KT--PCFTLHYAAPE-----LLNQNGYDESCDLWSLGVILYTMLSG 205

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 19/107 (17%)

Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILF--NEENVA--KWFDFLLSISIPEGETH 124
            +   I  ++ YLH    + +V R+ K  NIL+     N    +  DF  +  +      
Sbjct: 120 AVLFTITKTVEYLHA---QGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGL 176

Query: 125 ITTDRVIGTRGYSAPEYISICVLNEKS-----NVFSFGAFLFELLAG 166
           + T     T  + APE     VL  +      +++S G  L+ +L G
Sbjct: 177 LMT--PCYTANFVAPE-----VLERQGYDAACDIWSLGVLLYTMLTG 216

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 10/101 (9%)

Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILF---NEENVAKWFDFLLSISIPEGETHI 125
            +   +++++ YLH      IV R+ K +N+L+    E +     DF LS     G   +
Sbjct: 110 LVIQQVLSAVKYLHE---NGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNGI--M 164

Query: 126 TTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
           +T    GT GY APE ++    ++  + +S G   + LL G
Sbjct: 165 ST--ACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCG 203

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 34/153 (22%), Positives = 69/153 (45%), Gaps = 8/153 (5%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIAS---D 73
           IN I    +  + +I+  +   L      +V + +  G+L D +    +   +IA+   +
Sbjct: 65  INEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRE 124

Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGT 133
            + +L +LH      ++ R+ K+ NIL   +   K  DF     I   ++  +T  ++GT
Sbjct: 125 CLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRST--MVGT 179

Query: 134 RGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
             + APE ++      K +++S G    E++ G
Sbjct: 180 PYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEG 212

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 10/97 (10%)

Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVA----KWFDFLLSISIPEGETHITTDR 129
           I+N + YLH      I   + K +NI+  + NV     K  DF L+  I  G        
Sbjct: 123 ILNGVYYLHS---LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKN--- 176

Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
           + GT  + APE ++   L  +++++S G   + LL+G
Sbjct: 177 IFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 213

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 20/95 (21%), Positives = 40/95 (42%), Gaps = 8/95 (8%)

Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILF--NEENVAKWFDFLLSISIPEGETHITTDRVI 131
               L ++H      IV  + K +NI+    + +  K  DF L+  +   E         
Sbjct: 158 ACEGLKHMHE---HSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKV---TT 211

Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
            T  ++APE +    +   +++++ G   + LL+G
Sbjct: 212 ATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSG 246

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 33/173 (19%), Positives = 57/173 (32%), Gaps = 55/173 (31%)

Query: 27  SHNHILKRIGCCLQTPIPILVFQSVEYGTLRD-----------------CIFGAPLPR-- 67
            H +I+  +G C Q     ++ +    G LR+                  +    +    
Sbjct: 99  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKD 158

Query: 68  -LKIASDIVNSLAYL---HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGET 123
            +     +   + YL           + R+   +N+L  E NV K  DF L+        
Sbjct: 159 LVSCTYQLARGMEYLASQKC------IHRDLAARNVLVTENNVMKIADFGLA-------- 204

Query: 124 HITTDRVIGTRGYS-------------APEYISICVLNEKSNVFSFGAFLFEL 163
                R I    Y              APE +   V   +S+V+SFG  ++E+
Sbjct: 205 -----RDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEI 252

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 8/95 (8%)

Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILF--NEENVAKWFDFLLSISIPEGETHITTDRVI 131
           +   L ++H       V  + K +NI+F     N  K  DF L+  +   ++        
Sbjct: 264 VCKGLCHMHE---NNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKV---TT 317

Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
           GT  ++APE      +   ++++S G   + LL+G
Sbjct: 318 GTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSG 352

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 43.3 bits (103), Expect = 3e-05
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 7/95 (7%)

Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISI-PEGETHITTDRVIG 132
           IV    YLH      ++ R+ K  N+  NE+   K  DF L+  +  +GE         G
Sbjct: 124 IVLGCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVL---CG 177

Query: 133 TRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           T  Y APE +S    + + +V+S G  ++ LL G+
Sbjct: 178 TPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGK 212

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 33/153 (21%), Positives = 69/153 (45%), Gaps = 8/153 (5%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIAS---D 73
            N +       H ++++     L      ++ + ++ G L D +    L   +IA+    
Sbjct: 90  FNEVVIMRDYQHFNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQVRLNEEQIATVCEA 149

Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGT 133
           ++ +LAYLH    + ++ R+ K+ +IL   +   K  DF     I +      +  ++GT
Sbjct: 150 VLQALAYLHA---QGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKS--LVGT 204

Query: 134 RGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
             + APE IS  +   + +++S G  + E++ G
Sbjct: 205 PYWMAPEVISRSLYATEVDIWSLGIMVIEMVDG 237

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 7/95 (7%)

Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISI-PEGETHITTDRVIG 132
           IV    YLH      ++ R+ K  N+  NE+   K  DF L+  +  +GE         G
Sbjct: 150 IVLGCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVL---CG 203

Query: 133 TRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           T  Y APE +S    + + +V+S G  ++ LL G+
Sbjct: 204 TPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGK 238

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 42.9 bits (102), Expect = 3e-05
 Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 7/95 (7%)

Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISI-PEGETHITTDRVIG 132
           I+  + YLH      I+ R+    N+L       K  DF L+  +    E H T     G
Sbjct: 121 IITGMLYLHS---HGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHEKHYTL---CG 174

Query: 133 TRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           T  Y +PE  +      +S+V+S G   + LL GR
Sbjct: 175 TPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGR 209

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 38/153 (24%), Positives = 68/153 (44%), Gaps = 8/153 (5%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIAS---D 73
              IT  +Q    ++ K  G  L+     ++ + +  G+  D +   PL   +IA+   +
Sbjct: 68  QQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGPLDETQIATILRE 127

Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGT 133
           I+  L YLH       + R+ K  N+L +E    K  DF ++  + + +    T   +GT
Sbjct: 128 ILKGLDYLHS---EKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNT--FVGT 182

Query: 134 RGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
             + APE I     + K++++S G    EL  G
Sbjct: 183 PFWMAPEVIKQSAYDSKADIWSLGITAIELARG 215

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 20/106 (18%)

Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILF---NEENVAKWFDFLLSISIPEGETHI 125
           +I  DI  ++ +LH      I  R+ K +N+L+    ++ V K  DF  +    +    +
Sbjct: 132 EIMRDIGTAIQFLHS---HNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQNA--L 186

Query: 126 TTDRVIGTRGYSAPEYISICVLNEKS-----NVFSFGAFLFELLAG 166
            T     T  Y APE     VL  +      +++S G  ++ LL G
Sbjct: 187 QT--PCYTPYYVAPE-----VLGPEKYDKSCDMWSLGVIMYILLCG 225

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 43.2 bits (102), Expect = 4e-05
 Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 19/106 (17%)

Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILF---NEENVAKWFDFLLSISIPEGETHI 125
           +I   I  ++ YLH      I  R+ K +N+L+       + K  DF  +       +  
Sbjct: 165 EIMKSIGEAIQYLHS---INIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLT 221

Query: 126 TTDRVIGTRGYSAPEYISICVLNEKS-----NVFSFGAFLFELLAG 166
           T      T  Y APE     VL  +      +++S G  ++ LL G
Sbjct: 222 T---PCYTPYYVAPE-----VLGPEKYDKSCDMWSLGVIMYILLCG 259

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 43.2 bits (102), Expect = 4e-05
 Identities = 39/163 (23%), Positives = 67/163 (41%), Gaps = 33/163 (20%)

Query: 26  MSHNHILKRIG--------CCLQTPIPI-LVFQSVEYGTL-----RDCIFGAPLPRLKI- 70
           ++ N +L+              QT   +  V +    G L     R+ +F     R +  
Sbjct: 196 LTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRERVF--SEDRARFY 253

Query: 71  ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLS-ISIPEGETHITTDR 129
            ++IV++L YLH    + +V R+ K +N++ +++   K  DF L    I +G    T   
Sbjct: 254 GAEIVSALDYLHS--EKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGA---TMKT 308

Query: 130 VIGTRGYSAPEYISICVLNEKSNVF-----SFGAFLFELLAGR 167
             GT  Y APE     VL +            G  ++E++ GR
Sbjct: 309 FCGTPEYLAPE-----VLEDNDYGRAVDWWGLGVVMYEMMCGR 346

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 42/169 (24%), Positives = 66/169 (39%), Gaps = 39/169 (23%)

Query: 24  AQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRD-----------CIFGAPLPR----- 67
             + H HI+K  G C      I+VF+ +++G L              + G P        
Sbjct: 72  TNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELG 131

Query: 68  ----LKIASDIVNSLAYL---HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPE 120
               L IAS I + + YL   HF      V R+  T+N L     + K  DF +S  +  
Sbjct: 132 LSQMLHIASQIASGMVYLASQHF------VHRDLATRNCLVGANLLVKIGDFGMSRDVYS 185

Query: 121 GETHITTDRVIGTRG-----YSAPEYISICVLNEKSNVFSFGAFLFELL 164
            + +      +G        +  PE I       +S+V+SFG  L+E+ 
Sbjct: 186 TDYY-----RVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIF 229

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 36/172 (20%), Positives = 61/172 (35%), Gaps = 51/172 (29%)

Query: 27  SHNHILKRIGCCLQTPIPILVFQSVEYGTLRD----------CIFGAPLPR--------- 67
           +H +I+  +G C      +++ +   YG L +          C   +P            
Sbjct: 85  NHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDL 144

Query: 68  ---LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH 124
              L  +  +   +A+L     +  + R+   +NIL     + K  DF L+         
Sbjct: 145 EDLLSFSYQVAKGMAFLA---SKNCIHRDLAARNILLTHGRITKICDFGLA--------- 192

Query: 125 ITTDRVIGTRGY-------------SAPEYISICVLNEKSNVFSFGAFLFEL 163
               R I                   APE I  CV   +S+V+S+G FL+EL
Sbjct: 193 ----RDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWEL 240

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 33/173 (19%), Positives = 57/173 (32%), Gaps = 55/173 (31%)

Query: 27  SHNHILKRIGCCLQTPIPILVFQSVEYGTLRD-----------------CIFGAPLPR-- 67
            H +I+  +G C Q     ++ +    G LR+                  +    +    
Sbjct: 145 KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKD 204

Query: 68  -LKIASDIVNSLAYL---HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGET 123
            +     +   + YL           + R+   +N+L  E NV K  DF L+        
Sbjct: 205 LVSCTYQLARGMEYLASQKC------IHRDLAARNVLVTENNVMKIADFGLA-------- 250

Query: 124 HITTDRVIGTRGYS-------------APEYISICVLNEKSNVFSFGAFLFEL 163
                R I    Y              APE +   V   +S+V+SFG  ++E+
Sbjct: 251 -----RDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEI 298

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 7/95 (7%)

Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGT 133
           IV+++ Y H    + IV R+ K +N+L + +   K  DF  S     G          G 
Sbjct: 123 IVSAVQYCH---QKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGGKLDAF---CGA 176

Query: 134 RGYSAPEYIS-ICVLNEKSNVFSFGAFLFELLAGR 167
             Y+APE          + +V+S G  L+ L++G 
Sbjct: 177 PPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGS 211

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 42.6 bits (101), Expect = 5e-05
 Identities = 34/163 (20%), Positives = 64/163 (39%), Gaps = 37/163 (22%)

Query: 27  SHNHILKRIGCCLQTPIPILVFQSVEYGTLRD---------------CIFGAPLPR---L 68
            H +I+  +G C      +++ +   YG L +                I  +       L
Sbjct: 108 QHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLL 167

Query: 69  KIASDIVNSLAYL---HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHI 125
             +S +   +A+L   +       + R+   +N+L    +VAK  DF L+  I     + 
Sbjct: 168 HFSSQVAQGMAFLASKNC------IHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNY- 220

Query: 126 TTDRVIGTRG-----YSAPEYISICVLNEKSNVFSFGAFLFEL 163
               ++         + APE I  CV   +S+V+S+G  L+E+
Sbjct: 221 ----IVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEI 259

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 42.6 bits (101), Expect = 5e-05
 Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 10/97 (10%)

Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVA----KWFDFLLSISIPEGETHITTDR 129
           I++ + YLH    + I   + K +NI+  ++N+     K  DF L+  I +G        
Sbjct: 124 ILDGVNYLHT---KKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKN--- 177

Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
           + GT  + APE ++   L  +++++S G   + LL+G
Sbjct: 178 IFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 214

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 42.9 bits (101), Expect = 5e-05
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 6/95 (6%)

Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGT 133
           ++  + +LH      I+ R+ K  NI+   +   K  DF L+ +   G + + T  V+ T
Sbjct: 173 MLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTA--GTSFMMTPYVV-T 226

Query: 134 RGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRI 168
           R Y APE I      E  +++S G  + E++  +I
Sbjct: 227 RYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKI 261

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 42.6 bits (100), Expect = 6e-05
 Identities = 30/164 (18%), Positives = 61/164 (37%), Gaps = 16/164 (9%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI---FGAPLPRLKIAS- 72
              +  +   +H +I+      +      +V   + YG+ +D I   F   +  L IA  
Sbjct: 74  QGELHVSKLFNHPNIVPYRATFIADNELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYI 133

Query: 73  --DIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGET-----HI 125
              ++ +L Y+H       V R+ K  +IL + +          ++S+          H 
Sbjct: 134 LQGVLKALDYIHH---MGYVHRSVKASHILISVDGKVYLSGLRSNLSMISHGQRQRVVHD 190

Query: 126 TTDRVIGTRGYSAPEYISICVL--NEKSNVFSFGAFLFELLAGR 167
                +    + +PE +   +   + KS+++S G    EL  G 
Sbjct: 191 FPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGH 234

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 42.2 bits (100), Expect = 6e-05
 Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 13/102 (12%)

Query: 71  ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRV 130
            ++IV++L YLH    + I+ R+ K +NIL NE+   +  DF  +  +         +  
Sbjct: 136 TAEIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSF 192

Query: 131 IGTRGYSAPEYISICVLNEK-----SNVFSFGAFLFELLAGR 167
           +GT  Y +PE     +L EK     S++++ G  +++L+AG 
Sbjct: 193 VGTAQYVSPE-----LLTEKSACKSSDLWALGCIIYQLVAGL 229

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 41.9 bits (99), Expect = 8e-05
 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 9/96 (9%)

Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILF---NEENVAKWFDFLLSISIPEGETHITTDRV 130
           I+  + YLH      IV  + K QNIL          K  DF +S  I           +
Sbjct: 140 ILEGVYYLHQ---NNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHACELRE---I 193

Query: 131 IGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
           +GT  Y APE ++   +   +++++ G   + LL  
Sbjct: 194 MGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTH 229

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 42.0 bits (99), Expect = 8e-05
 Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 10/97 (10%)

Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVA----KWFDFLLSISIPEGETHITTDR 129
           I++ + YLH    + I   + K +NI+  ++N+     K  DF L+  I +G        
Sbjct: 124 ILDGVNYLHT---KKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKN--- 177

Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
           + GT  + APE ++   L  +++++S G   + LL+G
Sbjct: 178 IFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 214

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 9/97 (9%)

Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILFNEE-NVAKWFDFLLSISIPEGETHITTDRVIG 132
           +V ++ + H    R +V R+ K +NIL +     AK  DF     + +       D   G
Sbjct: 148 VVAAIQHCH---SRGVVHRDIKDENILIDLRRGCAKLIDFGSGALLHDEPYT-DFD---G 200

Query: 133 TRGYSAPEYIS-ICVLNEKSNVFSFGAFLFELLAGRI 168
           TR YS PE+IS        + V+S G  L++++ G I
Sbjct: 201 TRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDI 237

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 38/143 (26%), Positives = 59/143 (41%), Gaps = 24/143 (16%)

Query: 37  CCLQTPIPI-LVFQSVEYGTL-----RDCIFGAPLPRLKIASDIVNSLAYLHFGFPRPIV 90
            C QT   +  V + V  G L     +   F  P      A +I   L +L     + I+
Sbjct: 409 SCFQTMDRLYFVMEYVNGGDLMYHIQQVGRFKEPHAVFYAA-EIAIGLFFLQ---SKGII 464

Query: 91  LRNFKTQNILFNEENVAKWFDFLLS-ISIPEGETHITTDRVIGTRGYSAPEYISICVLNE 149
            R+ K  N++ + E   K  DF +   +I +G T   T    GT  Y APE     ++  
Sbjct: 465 YRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVT---TKTFCGTPDYIAPE-----IIAY 516

Query: 150 KSNVF-----SFGAFLFELLAGR 167
           +         +FG  L+E+LAG+
Sbjct: 517 QPYGKSVDWWAFGVLLYEMLAGQ 539

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 5/97 (5%)

Query: 68  LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHI-T 126
           +  +  +   + +L     R  + R+   +NIL +E+NV K  DF L+  I +   ++  
Sbjct: 196 ICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRK 252

Query: 127 TDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL 163
            D  +  + + APE I   V   +S+V+SFG  L+E+
Sbjct: 253 GDARLPLK-WMAPETIFDRVYTIQSDVWSFGVLLWEI 288

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 10/97 (10%)

Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILF----NEENVAKWFDFLLSISIPEGETHITTDR 129
           I++ + YLH    + I   + K +NI+           K  DF ++  I  G        
Sbjct: 117 ILDGVHYLHS---KRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAGNEFKN--- 170

Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
           + GT  + APE ++   L  +++++S G   + LL+G
Sbjct: 171 IFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 207

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 12/99 (12%)

Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILF---NEENVAKWFDFLLSISIPEGETHITTDRV 130
           ++ ++ YLH      I+ R+ K +N+L     E+ + K  DF  S  + E     T   +
Sbjct: 123 MLLAVQYLHE---NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRT---L 176

Query: 131 IGTRGYSAPEYISICVL---NEKSNVFSFGAFLFELLAG 166
            GT  Y APE +        N   + +S G  LF  L+G
Sbjct: 177 CGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSG 215

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 6/94 (6%)

Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGT 133
           ++  + +LH      I+ R+ K  NI+   +   K  DF L+ +   G + + T  V+ T
Sbjct: 136 MLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTA--GTSFMMTPYVV-T 189

Query: 134 RGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           R Y APE I      E  +++S G  + E++ G 
Sbjct: 190 RYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGG 223

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 40/177 (22%), Positives = 63/177 (35%), Gaps = 47/177 (26%)

Query: 24  AQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRD------------------------- 58
           A+  + +I+K +G C       L+F+ + YG L +                         
Sbjct: 105 AEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVS 164

Query: 59  CIFGAPLPR---LKIASDIVNSLAYL---HFGFPRPIVLRNFKTQNILFNEENVAKWFDF 112
                PL     L IA  +   +AYL    F      V R+  T+N L  E  V K  DF
Sbjct: 165 SPGPPPLSCAEQLCIARQVAAGMAYLSERKF------VHRDLATRNCLVGENMVVKIADF 218

Query: 113 LLSISIPEGETHITTDRVIGTRGY-----SAPEYISICVLNEKSNVFSFGAFLFELL 164
            LS +I   + +                   PE I       +S+V+++G  L+E+ 
Sbjct: 219 GLSRNIYSADYY-----KADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIF 270

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 12/104 (11%)

Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILF---NEENVAKWFDFLLSISIPEGETHI 125
                ++ ++ YLH      I+ R+ K +N+L     E+ + K  DF  S  + E     
Sbjct: 243 LYFYQMLLAVQYLHE---NGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMR 299

Query: 126 TTDRVIGTRGYSAPEYISICVL---NEKSNVFSFGAFLFELLAG 166
           T   + GT  Y APE +        N   + +S G  LF  L+G
Sbjct: 300 T---LCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSG 340

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 8/95 (8%)

Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILF--NEENVAKWFDFLLSISIPEGETHITTDRVI 131
           I   + ++H      I+  + K +NIL    +    K  DF L+      E         
Sbjct: 196 ICEGIRHMHQ---MYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREKLKV---NF 249

Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
           GT  + APE ++   ++  ++++S G   + LL+G
Sbjct: 250 GTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSG 284

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 43/155 (27%), Positives = 66/155 (42%), Gaps = 10/155 (6%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI--FGAPLPRLKIAS-- 72
           I  I+   Q    H++K  G   +     +V +    G++ D I      L   +IA+  
Sbjct: 72  IKEISIMQQCDSPHVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKTLTEDEIATIL 131

Query: 73  -DIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
              +  L YLHF      + R+ K  NIL N E  AK  DF ++  + +      T  VI
Sbjct: 132 QSTLKGLEYLHF---MRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT--VI 186

Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG 166
           GT  + APE I     N  ++++S G    E+  G
Sbjct: 187 GTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEG 221

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} Length = 396

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 40/144 (27%), Positives = 61/144 (42%), Gaps = 26/144 (18%)

Query: 37  CCLQTPIPI-LVFQSVEYGTL-----RDCIFGAPLPRLKI-ASDIVNSLAYLHFGFPRPI 89
            C QT   +  V + V  G L     R      P    +  +++I  +L YLH    R I
Sbjct: 120 SCFQTESRLFFVIEYVNGGDLMFHMQRQRKL--PEEHARFYSAEISLALNYLH---ERGI 174

Query: 90  VLRNFKTQNILFNEENVAKWFDFLLS-ISIPEGETHITTDRVIGTRGYSAPEYISICVLN 148
           + R+ K  N+L + E   K  D+ +    +  G+T   T    GT  Y APE     +L 
Sbjct: 175 IYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDT---TSTFCGTPNYIAPE-----ILR 226

Query: 149 EKSNVF-----SFGAFLFELLAGR 167
            +   F     + G  +FE++AGR
Sbjct: 227 GEDYGFSVDWWALGVLMFEMMAGR 250

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 28/165 (16%), Positives = 64/165 (38%), Gaps = 31/165 (18%)

Query: 24  AQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRD-----------------CIFGAPLP 66
           A++ H +++  +G   +     ++F    +G L +                     + L 
Sbjct: 67  ARLQHPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALE 126

Query: 67  R---LKIASDIVNSLAYL---HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPE 120
               + + + I   + YL   H       V ++  T+N+L  ++   K  D  L   +  
Sbjct: 127 PPDFVHLVAQIAAGMEYLSSHHV------VHKDLATRNVLVYDKLNVKISDLGLFREVYA 180

Query: 121 GET-HITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELL 164
            +   +  + ++  R + APE I     +  S+++S+G  L+E+ 
Sbjct: 181 ADYYKLLGNSLLPIR-WMAPEAIMYGKFSIDSDIWSYGVVLWEVF 224

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 38/183 (20%), Positives = 59/183 (32%), Gaps = 63/183 (34%)

Query: 25  QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRD-------------------------C 59
           Q++H H++K  G C Q    +L+ +  +YG+LR                           
Sbjct: 82  QVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDH 141

Query: 60  IFGAPLPR---LKIASDIVNSLAYL---HFGFPRPIVLRNFKTQNILFNEENVAKWFDFL 113
                L     +  A  I   + YL           V R+   +NIL  E    K  DF 
Sbjct: 142 PDERALTMGDLISFAWQISQGMQYLAEMKL------VHRDLAARNILVAEGRKMKISDFG 195

Query: 114 LSISIPEGETHITTDRVIGTRGY-------------SAPEYISICVLNEKSNVFSFGAFL 160
           LS             R +                   A E +   +   +S+V+SFG  L
Sbjct: 196 LS-------------RDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLL 242

Query: 161 FEL 163
           +E+
Sbjct: 243 WEI 245

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 13/80 (16%)

Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILF--NEENVAKWFDFLLSISIPEGETHITTDRVI 131
           +  +L +LH      I   + + +NI++     +  K  +F  +  +  G+       + 
Sbjct: 111 VCEALQFLHS---HNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRL---LF 164

Query: 132 GTRGYSAPEYISICVLNEKS 151
               Y APE     V     
Sbjct: 165 TAPEYYAPE-----VHQHDV 179

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* Length = 345

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 40/144 (27%), Positives = 61/144 (42%), Gaps = 26/144 (18%)

Query: 37  CCLQTPIPI-LVFQSVEYGTL-----RDCIFGAPLPRLKI-ASDIVNSLAYLHFGFPRPI 89
            C QT   +  V + V  G L     R      P    +  +++I  +L YLH    R I
Sbjct: 77  SCFQTESRLFFVIEYVNGGDLMFHMQRQRKL--PEEHARFYSAEISLALNYLH---ERGI 131

Query: 90  VLRNFKTQNILFNEENVAKWFDFLLS-ISIPEGETHITTDRVIGTRGYSAPEYISICVLN 148
           + R+ K  N+L + E   K  D+ +    +  G+T   T    GT  Y APE     +L 
Sbjct: 132 IYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDT---TSTFCGTPNYIAPE-----ILR 183

Query: 149 EKSNVF-----SFGAFLFELLAGR 167
            +   F     + G  +FE++AGR
Sbjct: 184 GEDYGFSVDWWALGVLMFEMMAGR 207

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 18/119 (15%), Positives = 35/119 (29%), Gaps = 27/119 (22%)

Query: 68  LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGE----- 122
             +   +   L Y+H      +V  + K  NI  +  ++                     
Sbjct: 118 KDLLLQVGRGLRYIHS---MSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFK 174

Query: 123 -------THITTDRV-IGTRGYSAPEYISICVLNE------KSNVFSFGAFLFELLAGR 167
                  T I++ +V  G   + A E     VL E      K+++F+    +       
Sbjct: 175 IGDLGHVTRISSPQVEEGDSRFLANE-----VLQENYTHLPKADIFALALTVVCAAGAE 228

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 11/98 (11%)

Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILFNEE--NVAKWFDFLLSISIPEGETHITTDRVI 131
           ++ ++ + H      ++ R+ K +NIL +     + K  DF     + +       D   
Sbjct: 158 VLEAVRHCH---NCGVLHRDIKDENILIDLNRGEL-KLIDFGSGALLKDTVYT-DFD--- 209

Query: 132 GTRGYSAPEYIS-ICVLNEKSNVFSFGAFLFELLAGRI 168
           GTR YS PE+I         + V+S G  L++++ G I
Sbjct: 210 GTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDI 247

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* Length = 353

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 17/103 (16%)

Query: 71  ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLS-ISIPEGETHITTDR 129
           A++I   L +L     + I+ R+ K  N++ + E   K  DF +   +I +G T   T  
Sbjct: 127 AAEIAIGLFFLQ---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVT---TKT 180

Query: 130 VIGTRGYSAPEYISICVLNEKSNVF-----SFGAFLFELLAGR 167
             GT  Y APE     ++  +         +FG  L+E+LAG+
Sbjct: 181 FCGTPDYIAPE-----IIAYQPYGKSVDWWAFGVLLYEMLAGQ 218

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 7/95 (7%)

Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGT 133
           I++++ Y H      +V R+ K +N+L +    AK  DF LS  + +GE   T+    G+
Sbjct: 120 ILSAVDYCH---RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTS---CGS 173

Query: 134 RGYSAPEYIS-ICVLNEKSNVFSFGAFLFELLAGR 167
             Y+APE IS       + +++S G  L+ LL G 
Sbjct: 174 PNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGT 208

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 17/100 (17%)

Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGT 133
           +V+++ YL     + I+ R+ K +NI+  E+   K  DF  +  +  G+   T     GT
Sbjct: 139 LVSAVGYLR---LKDIIHRDIKDENIVIAEDFTIKLIDFGSAAYLERGKLFYTF---CGT 192

Query: 134 RGYSAPEYISICVLNEKS------NVFSFGAFLFELLAGR 167
             Y APE     VL           ++S G  L+ L+   
Sbjct: 193 IEYCAPE-----VLMGNPYRGPELEMWSLGVTLYTLVFEE 227

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 38/159 (23%), Positives = 60/159 (37%), Gaps = 32/159 (20%)

Query: 28  HNHILKRIGCCLQTPIPILVFQSVEYGTLRD-----------------CIFGAPLPR--- 67
           H +I+  +G C       L  +   +G L D                     + L     
Sbjct: 85  HPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQL 144

Query: 68  LKIASDIVNSLAYL---HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH 124
           L  A+D+   + YL    F      + R+   +NIL  E  VAK  DF LS    +    
Sbjct: 145 LHFAADVARGMDYLSQKQF------IHRDLAARNILVGENYVAKIADFGLSRG--QEVYV 196

Query: 125 ITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL 163
             T   +  R + A E ++  V    S+V+S+G  L+E+
Sbjct: 197 KKTMGRLPVR-WMAIESLNYSVYTTNSDVWSYGVLLWEI 234

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 7/95 (7%)

Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGT 133
           I+ ++ Y H      IV R+ K +N+L ++    K  DF LS  + +G    T+    G+
Sbjct: 117 IICAIEYCH---RHKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGNFLKTS---CGS 170

Query: 134 RGYSAPEYIS-ICVLNEKSNVFSFGAFLFELLAGR 167
             Y+APE I+       + +V+S G  L+ +L GR
Sbjct: 171 PNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGR 205

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} Length = 353

 Score = 39.1 bits (92), Expect = 7e-04
 Identities = 42/144 (29%), Positives = 62/144 (43%), Gaps = 26/144 (18%)

Query: 37  CCLQTPIPI-LVFQSVEYGTL-----RDCIFGAPLPRLKI-ASDIVNSLAYLHFGFPRPI 89
           CC QTP  +  V + V  G L     +   F     R +  A++I+++L +LH    + I
Sbjct: 91  CCFQTPDRLFFVMEFVNGGDLMFHIQKSRRF--DEARARFYAAEIISALMFLH---DKGI 145

Query: 90  VLRNFKTQNILFNEENVAKWFDFLLS-ISIPEGETHITTDRVIGTRGYSAPEYISICVLN 148
           + R+ K  N+L + E   K  DF +    I  G T   T    GT  Y APE     +L 
Sbjct: 146 IYRDLKLDNVLLDHEGHCKLADFGMCKEGICNGVT---TATFCGTPDYIAPE-----ILQ 197

Query: 149 EKSNVF-----SFGAFLFELLAGR 167
           E          + G  L+E+L G 
Sbjct: 198 EMLYGPAVDWWAMGVLLYEMLCGH 221

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score = 39.1 bits (92), Expect = 7e-04
 Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 17/103 (16%)

Query: 71  ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLS-ISIPEGETHITTDR 129
            ++IV++L YLH    R +V R+ K +N++ +++   K  DF L    I +G T      
Sbjct: 111 GAEIVSALEYLH---SRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGAT---MKT 164

Query: 130 VIGTRGYSAPEYISICVLNEKSNVF-----SFGAFLFELLAGR 167
             GT  Y APE     VL +            G  ++E++ GR
Sbjct: 165 FCGTPEYLAPE-----VLEDNDYGRAVDWWGLGVVMYEMMCGR 202

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* Length = 345

 Score = 38.7 bits (91), Expect = 8e-04
 Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 17/103 (16%)

Query: 71  ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLS-ISIPEGETHITTDR 129
           A++I+  L +LH    + IV R+ K  NIL +++   K  DF +   ++        T+ 
Sbjct: 124 AAEIILGLQFLH---SKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAK---TNT 177

Query: 130 VIGTRGYSAPEYISICVLNEKSNVF-----SFGAFLFELLAGR 167
             GT  Y APE     +L  +         SFG  L+E+L G+
Sbjct: 178 FCGTPDYIAPE-----ILLGQKYNHSVDWWSFGVLLYEMLIGQ 215

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 39.0 bits (91), Expect = 9e-04
 Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 17/100 (17%)

Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGT 133
           I++ + Y H      +V R+ K +N+L +    AK  DF LS  + +GE   T+    G+
Sbjct: 125 ILSGVDYCH---RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTS---CGS 178

Query: 134 RGYSAPEYISICVLNEK------SNVFSFGAFLFELLAGR 167
             Y+APE     V++ +       +++S G  L+ LL G 
Sbjct: 179 PNYAAPE-----VISGRLYAGPEVDIWSSGVILYALLCGT 213

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	241
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	100.0
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	100.0
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	100.0
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	100.0
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	100.0
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	100.0
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	100.0
3soc_A	322	Activin receptor type-2A; structural genomics cons	100.0
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	100.0
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	100.0
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	100.0
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	100.0
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	100.0
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	100.0
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	100.0
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	100.0
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	100.0
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	100.0
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	100.0
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	100.0
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	100.0
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	100.0
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	100.0
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	100.0
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	100.0
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	100.0
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	100.0
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	100.0
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	100.0
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	100.0
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	100.0
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	100.0
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	100.0
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	100.0
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	100.0
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	100.0
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	100.0
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	100.0
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	100.0
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	100.0
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	100.0
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	100.0
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	100.0
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	100.0
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	100.0
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	100.0
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	100.0
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	100.0
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	100.0
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	100.0
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	100.0
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	100.0
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	100.0
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	100.0
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	100.0
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	100.0
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	100.0
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	100.0
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	100.0
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	100.0
3niz_A	311	Rhodanese family protein; structural genomics, str	100.0
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	100.0
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	100.0
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	100.0
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	100.0
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	100.0
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	100.0
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	100.0
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	100.0
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	100.0
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	100.0
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	100.0
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	100.0
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	100.0
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	100.0
3o0g_A	292	Cell division protein kinase 5; kinase activator c	100.0
3q4u_A	301	Activin receptor type-1; structural genomics conso	100.0
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	100.0
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	100.0
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	100.0
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	100.0
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	100.0
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	100.0
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	100.0
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	100.0
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	100.0
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	100.0
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	100.0
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	100.0
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	100.0
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	100.0
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	100.0
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	100.0
3ork_A	311	Serine/threonine protein kinase; structural genomi	100.0
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	100.0
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	100.0
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	100.0
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	100.0
3pls_A	298	Macrophage-stimulating protein receptor; protein k	100.0
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	100.0
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	100.0
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	100.0
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	100.0
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	100.0
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	100.0
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	100.0
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	100.0
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	100.0
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	100.0
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	100.0
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	100.0
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	100.0
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	100.0
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	100.0
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	100.0
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	100.0
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	100.0
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	100.0
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	100.0
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	100.0
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	100.0
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	100.0
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	100.0
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	100.0
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	100.0
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	100.0
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	100.0
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	100.0
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	100.0
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	100.0
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	100.0
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	100.0
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	100.0
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	100.0
3bhy_A	283	Death-associated protein kinase 3; death associate	100.0
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	100.0
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	100.0
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	100.0
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	100.0
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	100.0
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	100.0
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	100.0
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	100.0
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	100.0
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	100.0
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	100.0
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	100.0
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	100.0
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	100.0
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	100.0
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	100.0
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	100.0
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	100.0
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	100.0
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	100.0
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	100.0
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	100.0
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	100.0
3rp9_A	458	Mitogen-activated protein kinase; structural genom	100.0
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	100.0
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	100.0
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	100.0
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	100.0
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	100.0
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	100.0
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	100.0
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	100.0
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	100.0
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	100.0
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	100.0
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	100.0
2a19_B	284	Interferon-induced, double-stranded RNA-activated	100.0
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	100.0
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	100.0
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	100.0
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	100.0
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	100.0
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	100.0
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	100.0
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	100.0
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	100.0
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	100.0
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	100.0
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	100.0
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	100.0
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	100.0
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	100.0
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	100.0
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	100.0
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	100.0
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	100.0
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	100.0
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	100.0
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	100.0
3fme_A	290	Dual specificity mitogen-activated protein kinase;	100.0
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	100.0
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	100.0
3an0_A	340	Dual specificity mitogen-activated protein kinase;	100.0
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	100.0
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	100.0
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	100.0
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	100.0
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	100.0
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	100.0
3aln_A	327	Dual specificity mitogen-activated protein kinase;	100.0
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	100.0
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	100.0
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	100.0
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	100.0
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	100.0
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	100.0
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	100.0
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	100.0
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	100.0
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	100.0
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	100.0
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	100.0
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	100.0
2dyl_A	318	Dual specificity mitogen-activated protein kinase	100.0
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	100.0
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	100.0
3uqc_A	286	Probable conserved transmembrane protein; structur	100.0
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	100.0
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	100.0
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.98
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.97
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.92
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.8
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.54
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.34
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	99.07
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	99.02
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	98.81
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	98.58
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	98.34
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	98.12
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	97.87
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	97.64
3ats_A	357	Putative uncharacterized protein; hypothetical pro	97.61
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	97.01
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	96.9
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	96.72
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	96.47
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	96.43
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	96.37
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	96.21
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	96.04
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	95.89
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	93.67
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	91.79
4ann_A	215	ESSB; membrane protein, membrane secretion, ESS ty	91.54
4ano_A	219	ESSB; membrane protein, membrane secretion, ESS ty	89.67
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	89.25
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	89.09
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	87.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	87.74
2yle_A	229	Protein spire homolog 1; actin-binding protein, ac	86.8
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	86.62
3g15_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	82.6

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=1.7e-53  Score=343.32  Aligned_cols=215  Identities=17%  Similarity=0.247  Sum_probs=172.3

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----------------
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----------------   64 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----------------   64 (241)
                      ||.+.........++|.+|+.++++|+|||||+++|+|..++..++|||||++|+|.+++....                
T Consensus        61 vK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~  140 (308)
T 4gt4_A           61 IKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKS  140 (308)
T ss_dssp             EEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEEC
T ss_pred             EEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEEEEEEcCCCCcHHHHHHhhCcccccccccccccccc
Confidence            4666555555667889999999999999999999999999999999999999999999985421                


Q ss_pred             ----chHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcc
Q 044022           65 ----LPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPE  140 (241)
Q Consensus        65 ----~~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE  140 (241)
                          ..++.++.||+.||.|||   +++|+||||||+|||++.++.+||+|||+++...........+...||+.|+|||
T Consensus       141 ~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDLK~~NILl~~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE  217 (308)
T 4gt4_A          141 ALEPPDFVHLVAQIAAGMEYLS---SHHVVHKDLATRNVLVYDKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPE  217 (308)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHH---hCCCCCCCccccceEECCCCCEEECCcccceeccCCCceeEecccccCCcccCHH
Confidence                136789999999999999   8999999999999999999999999999998654433333334567899999999


Q ss_pred             cccccCCCcchhhHHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHH
Q 044022          141 YISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLH  219 (241)
Q Consensus       141 ~~~~~~~~~~~Di~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (241)
                      ++.+..++.++|||||||++|||+| |..||....         ..+..... ..+...+.+     .        .++.
T Consensus       218 ~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~---------~~~~~~~i-~~~~~~~~p-----~--------~~~~  274 (308)
T 4gt4_A          218 AIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYS---------NQDVVEMI-RNRQVLPCP-----D--------DCPA  274 (308)
T ss_dssp             HHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCC---------HHHHHHHH-HTTCCCCCC-----T--------TCCH
T ss_pred             HHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCC---------HHHHHHHH-HcCCCCCCc-----c--------cchH
Confidence            9999999999999999999999998 899996521         12222222 222222211     1        2336


Q ss_pred             HHHHHHHHhccCCCCCCCCCCC
Q 044022          220 ASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       220 ~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      .+.+|+.+||+.||++|||+.|
T Consensus       275 ~~~~li~~C~~~dP~~RPs~~e  296 (308)
T 4gt4_A          275 WVYALMIECWNEFPSRRPRFKD  296 (308)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHH
T ss_pred             HHHHHHHHHcCCChhHCcCHHH
Confidence            7889999999999999999854

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=1.3e-53  Score=342.68  Aligned_cols=214  Identities=22%  Similarity=0.327  Sum_probs=172.0

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----------------
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----------------   64 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----------------   64 (241)
                      ||.+... .....++|.+|+++|++|+|||||+++|+|.+++..++|||||++|+|.+++....                
T Consensus        48 vK~l~~~-~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~  126 (299)
T 4asz_A           48 VKTLKDA-SDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELT  126 (299)
T ss_dssp             EEEECSC-CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCC
T ss_pred             EEEeCCC-ChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCC
Confidence            3555432 33456789999999999999999999999999999999999999999999996431                


Q ss_pred             -chHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccc
Q 044022           65 -LPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYIS  143 (241)
Q Consensus        65 -~~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~  143 (241)
                       ..++.++.||+.||.|||   +++|+||||||+|||++.++.+||+|||+++...............||+.|+|||++.
T Consensus       127 ~~~~~~i~~qia~gl~yLH---~~~iiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~  203 (299)
T 4asz_A          127 QSQMLHIAQQIAAGMVYLA---SQHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIM  203 (299)
T ss_dssp             HHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH---hCCcccCccCHhhEEECCCCcEEECCcccceecCCCCceeecCceecChhhcCHHHHc
Confidence             146889999999999999   8999999999999999999999999999998665444333334456899999999999


Q ss_pred             ccCCCcchhhHHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHH
Q 044022          144 ICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASA  222 (241)
Q Consensus       144 ~~~~~~~~Di~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (241)
                      +..++.++|||||||++|||+| |+.||....         ..+..... ..+.....+     .        .+++.+.
T Consensus       204 ~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~---------~~~~~~~i-~~~~~~~~p-----~--------~~~~~~~  260 (299)
T 4asz_A          204 YRKFTTESDVWSLGVVLWEIFTYGKQPWYQLS---------NNEVIECI-TQGRVLQRP-----R--------TCPQEVY  260 (299)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSC---------HHHHHHHH-HHTCCCCCC-----T--------TCCHHHH
T ss_pred             CCCCCchhhHHHHHHHHHHHHcCCCCCCCCCC---------HHHHHHHH-HcCCCCCCC-----c--------cchHHHH
Confidence            9999999999999999999998 899996521         12222222 222222211     1        2236789


Q ss_pred             HHHHHhccCCCCCCCCCCC
Q 044022          223 QLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       223 ~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +|+.+||+.||++|||++|
T Consensus       261 ~li~~cl~~dP~~RPs~~~  279 (299)
T 4asz_A          261 ELMLGCWQREPHMRKNIKG  279 (299)
T ss_dssp             HHHHHHTCSSGGGSCCHHH
T ss_pred             HHHHHHcCCChhHCcCHHH
Confidence            9999999999999999853

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=2.9e-52  Score=335.16  Aligned_cols=210  Identities=21%  Similarity=0.296  Sum_probs=159.2

Q ss_pred             cccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC--c---hHHHHHHHHHHHhchhhcC
Q 044022           10 RHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP--L---PRLKIASDIVNSLAYLHFG   84 (241)
Q Consensus        10 ~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~--~---~~~~~~~~i~~~l~~lh~~   84 (241)
                      ....++|.+|++++++++|||||+++|++.+ +.+++|||||++|+|.+++....  .   .++.++.||+.||.|||  
T Consensus        73 ~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVmEy~~gGsL~~~l~~~~~~l~~~~~~~i~~qia~gL~yLH--  149 (307)
T 3omv_A           73 PEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLH--  149 (307)
T ss_dssp             HHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEECCSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-CeEEEEEEcCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH--
Confidence            3456789999999999999999999998864 56899999999999999996542  2   57889999999999999  


Q ss_pred             CCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc---cCCCcchhhHHHHHHHH
Q 044022           85 FPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI---CVLNEKSNVFSFGAFLF  161 (241)
Q Consensus        85 ~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~---~~~~~~~Di~s~G~~~~  161 (241)
                       +++|+||||||+|||++.++.+||+|||+++...............||+.|+|||++.+   ..++.++|||||||++|
T Consensus       150 -~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~  228 (307)
T 3omv_A          150 -AKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLY  228 (307)
T ss_dssp             -HTTCBCSCCCSSSEEEETTEEEEECCCSSCBC------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHH
T ss_pred             -HCCccCCccCHHHEEECCCCcEEEeeccCceecccCCcceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHH
Confidence             89999999999999999999999999999986554333333345689999999999964   35889999999999999


Q ss_pred             HHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          162 ELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       162 ~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ||+||+.||.....         ..........+...+.. +....        .+++.+.+|+.+||+.||++|||+.|
T Consensus       229 Elltg~~Pf~~~~~---------~~~~~~~~~~~~~~p~~-~~~~~--------~~~~~l~~li~~cl~~dP~~RPs~~e  290 (307)
T 3omv_A          229 ELMTGELPYSHINN---------RDQIIFMVGRGYASPDL-SKLYK--------NCPKAMKRLVADCVKKVKEERPLFPQ  290 (307)
T ss_dssp             HHHHSSCTTTTCCC---------HHHHHHHHHTTCCCCCS-TTSCT--------TSCHHHHHHHHHHTCSSSTTSCCHHH
T ss_pred             HHHHCCCCCCCCCh---------HHHHHHHHhcCCCCCCc-ccccc--------cchHHHHHHHHHHcCCCHhHCcCHHH
Confidence            99999999964211         11222222222111100 11112        23367899999999999999999853

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=1.7e-52  Score=340.50  Aligned_cols=214  Identities=21%  Similarity=0.291  Sum_probs=163.1

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----------------
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----------------   64 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----------------   64 (241)
                      ||.+.. ......++|.+|+++|++|+|||||+++|+|.+.+..++|||||++|+|.++++...                
T Consensus        76 vK~l~~-~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~  154 (329)
T 4aoj_A           76 VKALKE-ASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGP  154 (329)
T ss_dssp             EEEESC-CSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEEEECCTTCBHHHHHHTSSCC-----------CCS
T ss_pred             EEEECc-CCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCCcHHHHHHhcCcccccccccccccCCC
Confidence            455543 233456789999999999999999999999999999999999999999999986531                


Q ss_pred             ---chHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccc
Q 044022           65 ---LPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEY  141 (241)
Q Consensus        65 ---~~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~  141 (241)
                         ..++.++.||+.||.|||   +++|+||||||+|||++.++.+||+|||+++...............||+.|+|||+
T Consensus       155 l~~~~~~~i~~qia~gl~yLH---~~~iiHRDLKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~  231 (329)
T 4aoj_A          155 LGLGQLLAVASQVAAGMVYLA---GLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPES  231 (329)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEETTTEEEECCCC----------------CCCCGGGCCHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHh---cCCeecccccHhhEEECCCCcEEEcccccceeccCCCcceecCcccccccccChhh
Confidence               146789999999999999   89999999999999999999999999999986654433333345679999999999


Q ss_pred             ccccCCCcchhhHHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHH
Q 044022          142 ISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHA  220 (241)
Q Consensus       142 ~~~~~~~~~~Di~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (241)
                      +.+..++.++|||||||++|||+| |+.||....         ..+...... .+.....+     .        .+++.
T Consensus       232 ~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~---------~~~~~~~i~-~g~~~~~p-----~--------~~~~~  288 (329)
T 4aoj_A          232 ILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLS---------NTEAIDCIT-QGRELERP-----R--------ACPPE  288 (329)
T ss_dssp             HTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSC---------HHHHHHHHH-HTCCCCCC-----T--------TCCHH
T ss_pred             hcCCCCCccccccchHHHHHHHHcCCCCCCCCCC---------HHHHHHHHH-cCCCCCCc-----c--------cccHH
Confidence            999999999999999999999999 899996522         122222222 22211111     1        22367


Q ss_pred             HHHHHHHhccCCCCCCCCCCC
Q 044022          221 SAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       221 ~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +.+|+.+||+.||++|||++|
T Consensus       289 ~~~li~~cl~~dP~~RPs~~e  309 (329)
T 4aoj_A          289 VYAIMRGCWQREPQQRHSIKD  309 (329)
T ss_dssp             HHHHHHHHCCSSTTTSCCHHH
T ss_pred             HHHHHHHHcCcChhHCcCHHH
Confidence            899999999999999999864

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=1.1e-51  Score=331.35  Aligned_cols=214  Identities=16%  Similarity=0.207  Sum_probs=173.3

Q ss_pred             Cccccccc--ccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHH
Q 044022            1 MKFYGHEY--HRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDI   74 (241)
Q Consensus         1 iK~~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i   74 (241)
                      ||++.+..  .....+.+.+|+++|++|+|||||++++++.+++.+|+|||||+||+|.+++....    .....++.||
T Consensus        62 iK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivmEy~~gG~L~~~i~~~~~l~e~~~~~~~~qi  141 (311)
T 4aw0_A           62 IKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEI  141 (311)
T ss_dssp             EEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred             EEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEecCCCCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence            35554322  33456789999999999999999999999999999999999999999999986542    2467899999


Q ss_pred             HHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhH
Q 044022           75 VNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVF  154 (241)
Q Consensus        75 ~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~  154 (241)
                      +.||.|||   +++|+||||||+|||++.++.+||+|||+++............+.+||+.|+|||++.+..++.++|||
T Consensus       142 ~~al~ylH---~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiW  218 (311)
T 4aw0_A          142 VSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLW  218 (311)
T ss_dssp             HHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCEECCTTTTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHH
T ss_pred             HHHHHHHH---HCCCccCCCCHHHeEEcCCCCEEEEEcCCceecCCCCCcccccCcccCcccCCHHHHcCCCCCcHHHHH
Confidence            99999999   999999999999999999999999999999987654443444567899999999999999999999999


Q ss_pred             HHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCC
Q 044022          155 SFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPE  234 (241)
Q Consensus       155 s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~  234 (241)
                      |+||++|+|++|+.||...         ...+......... + ..     ...        .++++.+|+.+||+.||+
T Consensus       219 SlGvilyeml~G~~PF~~~---------~~~~~~~~i~~~~-~-~~-----p~~--------~s~~~~dli~~lL~~dp~  274 (311)
T 4aw0_A          219 ALGCIIYQLVAGLPPFRAG---------NEGLIFAKIIKLE-Y-DF-----PEK--------FFPKARDLVEKLLVLDAT  274 (311)
T ss_dssp             HHHHHHHHHHHSSCSSCCS---------SHHHHHHHHHHTC-C-CC-----CTT--------CCHHHHHHHHHHSCSSGG
T ss_pred             HHHHHHHHHHhCCCCCCCC---------CHHHHHHHHHcCC-C-CC-----Ccc--------cCHHHHHHHHHHccCCHh
Confidence            9999999999999999541         1222222222211 1 11     111        225688999999999999


Q ss_pred             CCCCCCC
Q 044022          235 DRPTMVD  241 (241)
Q Consensus       235 ~Rpt~~e  241 (241)
                      +|||++|
T Consensus       275 ~R~t~~e  281 (311)
T 4aw0_A          275 KRLGCEE  281 (311)
T ss_dssp             GSTTSGG
T ss_pred             HCcChHH
Confidence            9999864

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=4.1e-51  Score=332.57  Aligned_cols=214  Identities=16%  Similarity=0.246  Sum_probs=171.2

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc---hHHHHHHHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL---PRLKIASDIVNS   77 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~i~~~   77 (241)
                      ||++... .....+.+.+|+++|++++|||||+++++|..++.+|+|||||+||+|.+++.....   ....++.||+.|
T Consensus       104 iK~i~~~-~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg~L~~~l~~~~l~e~~~~~~~~qi~~a  182 (346)
T 4fih_A          104 VKKMDLR-KQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQA  182 (346)
T ss_dssp             EEEEEGG-GCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCCTTEEHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred             EEEEecC-chhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            4555433 234567789999999999999999999999999999999999999999999876543   467899999999


Q ss_pred             hchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHH
Q 044022           78 LAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFG  157 (241)
Q Consensus        78 l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G  157 (241)
                      |.|||   +++|+||||||+|||++.++.+||+|||+++........  ....+||+.|+|||++.+..++.++||||||
T Consensus       183 L~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~--~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlG  257 (346)
T 4fih_A          183 LSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPR--RKSLVGTPYWMAPELISRLPYGPEVDIWSLG  257 (346)
T ss_dssp             HHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCC--BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHH
T ss_pred             HHHHH---HCCcccccCCHHHEEECCCCCEEEecCcCceecCCCCCc--ccccccCcCcCCHHHHCCCCCCcHHHHHHHH
Confidence            99999   999999999999999999999999999999876543322  2456899999999999999999999999999


Q ss_pred             HHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCC
Q 044022          158 AFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRP  237 (241)
Q Consensus       158 ~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rp  237 (241)
                      |++|||++|+.||...         ...+......... ......   .        ...++++.+|+.+||+.||++||
T Consensus       258 vilyeml~G~~PF~~~---------~~~~~~~~i~~~~-~~~~~~---~--------~~~s~~~~dli~~~L~~dP~~R~  316 (346)
T 4fih_A          258 IMVIEMVDGEPPYFNE---------PPLKAMKMIRDNL-PPRLKN---L--------HKVSPSLKGFLDRLLVRDPAQRA  316 (346)
T ss_dssp             HHHHHHHHSSCTTTTS---------CHHHHHHHHHHSS-CCCCSC---G--------GGSCHHHHHHHHHHSCSSTTTSC
T ss_pred             HHHHHHHHCCCCCCCc---------CHHHHHHHHHcCC-CCCCCc---c--------ccCCHHHHHHHHHHcCCChhHCc
Confidence            9999999999999541         1122222222111 111110   0        12336789999999999999999


Q ss_pred             CCCC
Q 044022          238 TMVD  241 (241)
Q Consensus       238 t~~e  241 (241)
                      |++|
T Consensus       317 ta~e  320 (346)
T 4fih_A          317 TAAE  320 (346)
T ss_dssp             CHHH
T ss_pred             CHHH
Confidence            9864

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=2.4e-51  Score=334.43  Aligned_cols=213  Identities=20%  Similarity=0.225  Sum_probs=169.8

Q ss_pred             Cccccccc-ccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC------chHHHHHHH
Q 044022            1 MKFYGHEY-HRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP------LPRLKIASD   73 (241)
Q Consensus         1 iK~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~------~~~~~~~~~   73 (241)
                      ||++.... .....++|.+|+++|++|+|||||++++++.+++.+|+|||||+||+|.+++....      .....++.|
T Consensus        54 iK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmEy~~gg~L~~~i~~~~~~~~~e~~~~~~~~q  133 (350)
T 4b9d_A           54 IKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQ  133 (350)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHTTTCCCCHHHHHHHHHH
T ss_pred             EEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEeCCCCCcHHHHHHHcCCCCCCHHHHHHHHHH
Confidence            45554332 33456789999999999999999999999999999999999999999999985431      146789999


Q ss_pred             HHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhh
Q 044022           74 IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNV  153 (241)
Q Consensus        74 i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di  153 (241)
                      |+.||.|||   +++|+||||||+|||++.++.+||+|||+++.......  .....+||+.|+|||++.+..++.++||
T Consensus       134 i~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~--~~~~~~GT~~YmAPE~l~~~~y~~~~Di  208 (350)
T 4b9d_A          134 ICLALKHVH---DRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVE--LARACIGTPYYLSPEICENKPYNNKSDI  208 (350)
T ss_dssp             HHHHHHHHH---HTTCEETTCCGGGEEECTTCCEEECSTTEESCCCHHHH--HHHHHHSCCTTCCHHHHTTCCCCHHHHH
T ss_pred             HHHHHHHHH---HCCeeeccCCHHHEEECCCCCEEEcccccceeecCCcc--cccccCCCccccCHHHHCCCCCCcHHHH
Confidence            999999999   99999999999999999999999999999976543211  1234579999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCC
Q 044022          154 FSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSP  233 (241)
Q Consensus       154 ~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p  233 (241)
                      |||||++|+|++|+.||...         ...+....... +.+...     ..        ..+.++.+|+.+||+.||
T Consensus       209 wSlGvilyemltG~~PF~~~---------~~~~~~~~i~~-~~~~~~-----~~--------~~s~~~~~li~~~L~~dP  265 (350)
T 4b9d_A          209 WALGCVLYELCTLKHAFEAG---------SMKNLVLKIIS-GSFPPV-----SL--------HYSYDLRSLVSQLFKRNP  265 (350)
T ss_dssp             HHHHHHHHHHHHSSCSCCCS---------SHHHHHHHHHH-TCCCCC-----CT--------TSCHHHHHHHHHHTCSSG
T ss_pred             HHHHHHHHHHHHCCCCCCCc---------CHHHHHHHHHc-CCCCCC-----Cc--------cCCHHHHHHHHHHccCCh
Confidence            99999999999999999541         22222332222 211111     11        123578999999999999


Q ss_pred             CCCCCCCC
Q 044022          234 EDRPTMVD  241 (241)
Q Consensus       234 ~~Rpt~~e  241 (241)
                      ++|||++|
T Consensus       266 ~~R~s~~e  273 (350)
T 4b9d_A          266 RDRPSVNS  273 (350)
T ss_dssp             GGSCCHHH
T ss_pred             hHCcCHHH
Confidence            99999854

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=1e-50  Score=323.99  Aligned_cols=202  Identities=17%  Similarity=0.255  Sum_probs=158.1

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeee----CCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhh
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQ----TPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLH   82 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~----~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh   82 (241)
                      ...++|.+|++++++|+|||||+++++|..    ++.+++|||||++|+|.+++.....    ....++.||+.||.|||
T Consensus        67 ~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvmEy~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~ylH  146 (290)
T 3fpq_A           67 SERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLH  146 (290)
T ss_dssp             HHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEEeCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            456779999999999999999999999875    3468999999999999999965422    46789999999999999


Q ss_pred             cCCCCC--ceeccCCCCCeeecC-CCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHH
Q 044022           83 FGFPRP--IVLRNFKTQNILFNE-ENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAF  159 (241)
Q Consensus        83 ~~~~~~--ivh~dl~~~nil~~~-~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~  159 (241)
                         +++  |+||||||+|||++. ++.+||+|||+|+......    ....+||+.|+|||++.+ .++.++|||||||+
T Consensus       147 ---~~~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~~~~----~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvi  218 (290)
T 3fpq_A          147 ---TRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASF----AKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMC  218 (290)
T ss_dssp             ---TSSSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCCTTS----BEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHH
T ss_pred             ---HCCCCEEecccChhheeEECCCCCEEEEeCcCCEeCCCCc----cCCcccCccccCHHHcCC-CCCcHHHHHHHHHH
Confidence               777  999999999999984 7899999999997543322    234689999999998874 69999999999999


Q ss_pred             HHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCC
Q 044022          160 LFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM  239 (241)
Q Consensus       160 ~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~  239 (241)
                      +|+|++|+.||.....        ......... .+    .........        .++.+.+|+.+||+.||++|||+
T Consensus       219 lyelltg~~Pf~~~~~--------~~~~~~~i~-~~----~~~~~~~~~--------~~~~~~~li~~~L~~dP~~R~s~  277 (290)
T 3fpq_A          219 MLEMATSEYPYSECQN--------AAQIYRRVT-SG----VKPASFDKV--------AIPEVKEIIEGCIRQNKDERYSI  277 (290)
T ss_dssp             HHHHHHSSCTTTTCSS--------HHHHHHHHT-TT----CCCGGGGGC--------CCHHHHHHHHHHSCSSGGGSCCH
T ss_pred             HHHHHHCCCCCCCCCc--------HHHHHHHHH-cC----CCCCCCCcc--------CCHHHHHHHHHHccCChhHCcCH
Confidence            9999999999954211        111111111 11    111111111        22568899999999999999998


Q ss_pred             CC
Q 044022          240 VD  241 (241)
Q Consensus       240 ~e  241 (241)
                      +|
T Consensus       278 ~e  279 (290)
T 3fpq_A          278 KD  279 (290)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=4.4e-50  Score=334.04  Aligned_cols=214  Identities=16%  Similarity=0.246  Sum_probs=171.2

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc---hHHHHHHHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL---PRLKIASDIVNS   77 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~i~~~   77 (241)
                      ||++... .....+.+.+|+++|++|+|||||+++++|..++.+|+|||||+||+|.+++.....   ....++.||+.|
T Consensus       181 iK~i~~~-~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~~gG~L~~~i~~~~l~e~~~~~~~~qil~a  259 (423)
T 4fie_A          181 VKKMDLR-KQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQA  259 (423)
T ss_dssp             EEEEEST-TCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTEEHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred             EEEEecc-chhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeCCCCCcHHHHHhccCCCHHHHHHHHHHHHHH
Confidence            4555433 234567799999999999999999999999999999999999999999999876543   567899999999


Q ss_pred             hchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHH
Q 044022           78 LAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFG  157 (241)
Q Consensus        78 l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G  157 (241)
                      |.|||   +++|+||||||+|||++.++.+||+|||+++.......  .....+||+.|+|||++.+..|+.++||||||
T Consensus       260 L~ylH---~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~--~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlG  334 (423)
T 4fie_A          260 LSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP--RRKSLVGTPYWMAPELISRLPYGPEVDIWSLG  334 (423)
T ss_dssp             HHHHH---HTTEECCCCSTTTEEECTTCCEEECCCTTCEECCSSCC--CBCCCEECTTTCCHHHHTTCCBCTHHHHHHHH
T ss_pred             HHHHH---HCCeecccCCHHHEEEcCCCCEEEecCccceECCCCCc--cccccccCcCcCCHHHHCCCCCCcHHHHHHHH
Confidence            99999   99999999999999999999999999999987654322  22456899999999999999999999999999


Q ss_pred             HHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCC
Q 044022          158 AFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRP  237 (241)
Q Consensus       158 ~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rp  237 (241)
                      |++|||++|+.||...         ...+......... ......   ..        ..++.+.+|+.+||..||++||
T Consensus       335 vilyeml~G~~PF~~~---------~~~~~~~~i~~~~-~~~~~~---~~--------~~s~~~~dli~~~L~~dP~~R~  393 (423)
T 4fie_A          335 IMVIEMVDGEPPYFNE---------PPLKAMKMIRDNL-PPRLKN---LH--------KVSPSLKGFLDRLLVRDPAQRA  393 (423)
T ss_dssp             HHHHHHHHSSCTTTTS---------CHHHHHHHHHHSC-CCCCSC---TT--------SSCHHHHHHHHHHSCSSTTTSC
T ss_pred             HHHHHHHHCCCCCCCc---------CHHHHHHHHHcCC-CCCCcc---cc--------cCCHHHHHHHHHHcCCChhHCc
Confidence            9999999999999541         1222222222211 111110   11        1235789999999999999999


Q ss_pred             CCCC
Q 044022          238 TMVD  241 (241)
Q Consensus       238 t~~e  241 (241)
                      |++|
T Consensus       394 ta~e  397 (423)
T 4fie_A          394 TAAE  397 (423)
T ss_dssp             CHHH
T ss_pred             CHHH
Confidence            9864

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=2.2e-51  Score=336.52  Aligned_cols=215  Identities=20%  Similarity=0.318  Sum_probs=170.8

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCC-CcccceeeeeeeC-CcceEEEEecCCCCHHHhhcCCC---------------
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSH-NHILKRIGCCLQT-PIPILVFQSVEYGTLRDCIFGAP---------------   64 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h-~~iv~~~~~~~~~-~~~~lv~e~~~~~sL~~~l~~~~---------------   64 (241)
                      |.+.........++|.+|+++|.+++| ||||+++|+|... +.+++|||||++|+|.++++...               
T Consensus       100 K~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~  179 (353)
T 4ase_A          100 KMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYK  179 (353)
T ss_dssp             EEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CT
T ss_pred             EEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEEEEEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhcc
Confidence            455444444456789999999999966 8999999999765 56899999999999999996421               


Q ss_pred             -----chHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCc
Q 044022           65 -----LPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAP  139 (241)
Q Consensus        65 -----~~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aP  139 (241)
                           ..++.++.||+.||.|||   +++|+||||||+|||++.++.+||+|||+++...........+...||+.|+||
T Consensus       180 ~~l~~~~~~~~~~qia~gl~yLH---~~~iiHRDLK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAP  256 (353)
T 4ase_A          180 DFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAP  256 (353)
T ss_dssp             TCBCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCH
T ss_pred             ccCCHHHHHHHHHHHHHHHHhHh---hCCeecCccCccceeeCCCCCEEECcchhhhhcccCCCceeeccccccccccCH
Confidence                 136789999999999999   899999999999999999999999999999877655544455567799999999


Q ss_pred             ccccccCCCcchhhHHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHH
Q 044022          140 EYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQL  218 (241)
Q Consensus       140 E~~~~~~~~~~~Di~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (241)
                      |++.+..++.++|||||||++|||+| |+.||.....         .+........+.....++             .++
T Consensus       257 E~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~---------~~~~~~~i~~g~~~~~p~-------------~~~  314 (353)
T 4ase_A          257 ETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKI---------DEEFCRRLKEGTRMRAPD-------------YTT  314 (353)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCC---------SHHHHHHHHHTCCCCCCT-------------TCC
T ss_pred             HHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCCH---------HHHHHHHHHcCCCCCCCc-------------cCC
Confidence            99999999999999999999999998 8999965211         112222222332222221             123


Q ss_pred             HHHHHHHHHhccCCCCCCCCCCC
Q 044022          219 HASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       219 ~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +.+.+++.+||+.||++|||++|
T Consensus       315 ~~~~~li~~c~~~dP~~RPt~~e  337 (353)
T 4ase_A          315 PEMYQTMLDCWHGEPSQRPTFSE  337 (353)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             HHHHHHHHHHcCcChhHCcCHHH
Confidence            57889999999999999999853

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=5e-50  Score=325.28  Aligned_cols=201  Identities=20%  Similarity=0.255  Sum_probs=158.1

Q ss_pred             HHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCCCCceec
Q 044022           17 INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFPRPIVLR   92 (241)
Q Consensus        17 ~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~~~ivh~   92 (241)
                      .+|++++++|+|||||++++++.+++.+|+|||||+||+|.++++...    .....++.||+.||.|||   +++|+||
T Consensus        98 ~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH---~~~IiHR  174 (336)
T 4g3f_A           98 VEELVACAGLSSPRIVPLYGAVREGPWVNIFMELLEGGSLGQLIKQMGCLPEDRALYYLGQALEGLEYLH---TRRILHG  174 (336)
T ss_dssp             THHHHTTTTCCCTTBCCEEEEEEETTEEEEEECCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---TTTEECS
T ss_pred             HHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeccCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCceec
Confidence            479999999999999999999999999999999999999999996542    256789999999999999   9999999


Q ss_pred             cCCCCCeeecCCC-CeEEeeccCceecCCCCc---ceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcCc
Q 044022           93 NFKTQNILFNEEN-VAKWFDFLLSISIPEGET---HITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRI  168 (241)
Q Consensus        93 dl~~~nil~~~~~-~~~l~df~~~~~~~~~~~---~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~~  168 (241)
                      ||||+|||++.++ .+||+|||+++.......   .......+||+.|+|||++.+..++.++|||||||++|+|++|+.
T Consensus       175 DlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~  254 (336)
T 4g3f_A          175 DVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCH  254 (336)
T ss_dssp             CCCGGGEEECTTSCCEEECCCTTCEEC------------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSC
T ss_pred             ccCHHHEEEeCCCCEEEEeeCCCCeEccCCCcccceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcC
Confidence            9999999999987 699999999987654321   122344679999999999999999999999999999999999999


Q ss_pred             ccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          169 HIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       169 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ||......     .....    ......    +...+.+.        .++.+.+++.+||+.||++|||++|
T Consensus       255 Pf~~~~~~-----~~~~~----i~~~~~----~~~~~~~~--------~s~~~~~li~~~L~~dP~~R~sa~e  306 (336)
T 4g3f_A          255 PWTQYFRG-----PLCLK----IASEPP----PIREIPPS--------CAPLTAQAIQEGLRKEPVHRASAME  306 (336)
T ss_dssp             SSTTTCCS-----CCHHH----HHHSCC----GGGGSCTT--------SCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             CCCCCCHH-----HHHHH----HHcCCC----CchhcCcc--------CCHHHHHHHHHHccCCHhHCcCHHH
Confidence            99652211     11111    111110    00111122        2367889999999999999999853

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=3.3e-49  Score=312.78  Aligned_cols=210  Identities=23%  Similarity=0.305  Sum_probs=157.0

Q ss_pred             Cccccccc--ccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHH
Q 044022            1 MKFYGHEY--HRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDI   74 (241)
Q Consensus         1 iK~~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i   74 (241)
                      ||++.+..  ......++.+|++++++++|||||++++++..++..|+||||+ +|+|.+++.....    ....++.||
T Consensus        43 iK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmEy~-~g~L~~~l~~~~~l~e~~~~~~~~qi  121 (275)
T 3hyh_A           43 LKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVIEYA-GNELFDYIVQRDKMSEQEARRFFQQI  121 (275)
T ss_dssp             EEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECC-CEEHHHHHHHSCSCCHHHHHHHHHHH
T ss_pred             EEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEEeCC-CCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence            45555332  2245678999999999999999999999999999999999999 6899998865422    567899999


Q ss_pred             HHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCC-Ccchhh
Q 044022           75 VNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVL-NEKSNV  153 (241)
Q Consensus        75 ~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~-~~~~Di  153 (241)
                      +.||.|||   +++|+||||||+|||++.++.+||+|||+++.......   ..+..||+.|+|||++.+..+ +.++||
T Consensus       122 ~~al~ylH---~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~~---~~~~~GT~~Y~APE~~~~~~y~~~~~Di  195 (275)
T 3hyh_A          122 ISAVEYCH---RHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNF---LKTSCGSPNYAAPEVISGKLYAGPEVDV  195 (275)
T ss_dssp             HHHHHHHH---HTTCCCCCCCTTTEEECTTCCEEECCSSCC------------------CTTSCHHHHSSSSCCCTHHHH
T ss_pred             HHHHHHHH---HCCcccccCChHHeEECCCCCEEEeecCCCeecCCCCc---cCCeeECcccCChhhhcCCCCCCChhhh
Confidence            99999999   99999999999999999999999999999976544322   234579999999999998776 579999


Q ss_pred             HHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCC
Q 044022          154 FSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSP  233 (241)
Q Consensus       154 ~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p  233 (241)
                      ||+||++|+|++|+.||...         ...+....... +.. .     +...        .++.+.+|+.+||+.||
T Consensus       196 wSlGvily~lltg~~PF~~~---------~~~~~~~~i~~-~~~-~-----~p~~--------~s~~~~~li~~~L~~dP  251 (275)
T 3hyh_A          196 WSCGVILYVMLCRRLPFDDE---------SIPVLFKNISN-GVY-T-----LPKF--------LSPGAAGLIKRMLIVNP  251 (275)
T ss_dssp             HHHHHHHHHHHHSSCSSCCS---------SHHHHHHHHHH-TCC-C-----CCTT--------SCHHHHHHHHHHSCSSG
T ss_pred             HHHHHHHHHHHHCCCCCCCC---------CHHHHHHHHHc-CCC-C-----CCCC--------CCHHHHHHHHHHccCCh
Confidence            99999999999999999541         12222222222 111 1     1111        22578899999999999


Q ss_pred             CCCCCCCC
Q 044022          234 EDRPTMVD  241 (241)
Q Consensus       234 ~~Rpt~~e  241 (241)
                      ++|||++|
T Consensus       252 ~~R~s~~e  259 (275)
T 3hyh_A          252 LNRISIHE  259 (275)
T ss_dssp             GGSCCHHH
T ss_pred             hHCcCHHH
Confidence            99999864

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=3.8e-50  Score=322.20  Aligned_cols=200  Identities=22%  Similarity=0.225  Sum_probs=156.8

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ...++.+|+++|++++|||||++++++..++.+|+|||||+||+|.+++.....    ....++.||+.||.|||   ++
T Consensus        69 ~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivmEy~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH---~~  145 (304)
T 3ubd_A           69 DRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLH---SL  145 (304)
T ss_dssp             ECC------CCCCCCCCTTEECEEEEEEETTEEEEEECCCTTCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH---HT
T ss_pred             HHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HC
Confidence            445788999999999999999999999999999999999999999999865422    46789999999999999   99


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcC
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR  167 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~  167 (241)
                      +|+||||||+|||++.++.+||+|||+++.......  ...+.+||+.|+|||++.+..++.++||||+||++|+|++|+
T Consensus       146 ~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~--~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~  223 (304)
T 3ubd_A          146 GIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEK--KAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGT  223 (304)
T ss_dssp             TCCCSSCCGGGEEECTTSCEEEESSEEEEC-----C--CCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSS
T ss_pred             CCcCCCCCHHHeEEcCCCCEEecccccceeccCCCc--cccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCC
Confidence            999999999999999999999999999986543322  223467999999999999999999999999999999999999


Q ss_pred             cccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          168 IHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       168 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                      .||...         ...+......... . ..     ...        .++++.+|+.+||+.||++|||+.
T Consensus       224 ~PF~~~---------~~~~~~~~i~~~~-~-~~-----p~~--------~s~~~~~li~~~L~~dP~~R~ta~  272 (304)
T 3ubd_A          224 LPFQGK---------DRKETMTMILKAK-L-GM-----PQF--------LSPEAQSLLRMLFKRNPANRLGAG  272 (304)
T ss_dssp             CSSCCS---------SHHHHHHHHHHCC-C-CC-----CTT--------SCHHHHHHHHHHTCSSGGGSTTCS
T ss_pred             CCCCCc---------CHHHHHHHHHcCC-C-CC-----CCc--------CCHHHHHHHHHHcccCHHHCCCCC
Confidence            999541         1222233222211 1 11     111        225788999999999999999973

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=1.3e-48  Score=315.01  Aligned_cols=218  Identities=20%  Similarity=0.204  Sum_probs=154.6

Q ss_pred             HHHHHHHHhcCCCcccceeeeeeeCC----cceEEEEecCCCCHHHhhcCCCc---hHHHHHHHHHHHhchhhcC-----
Q 044022           17 INNITYAAQMSHNHILKRIGCCLQTP----IPILVFQSVEYGTLRDCIFGAPL---PRLKIASDIVNSLAYLHFG-----   84 (241)
Q Consensus        17 ~~e~~~l~~l~h~~iv~~~~~~~~~~----~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~i~~~l~~lh~~-----   84 (241)
                      ..|+..+.+++|||||+++++|...+    .+++|||||++|+|.++++....   .+++++.+++.||+|||+.     
T Consensus        45 e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~Ey~~~gsL~~~l~~~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~  124 (303)
T 3hmm_A           45 EAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQ  124 (303)
T ss_dssp             HHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTT
T ss_pred             HHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEecCCCCCcHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            34566667889999999999998654    57999999999999999987654   5788999999999999931     


Q ss_pred             CCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcc--eeecccccCCCccCccccccc------CCCcchhhHHH
Q 044022           85 FPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH--ITTDRVIGTRGYSAPEYISIC------VLNEKSNVFSF  156 (241)
Q Consensus        85 ~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~--~~~~~~~~~~~~~aPE~~~~~------~~~~~~Di~s~  156 (241)
                      ...+|+||||||+|||++.++++||+|||+++........  .......||+.|+|||++.+.      .++.++|||||
T Consensus       125 ~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~  204 (303)
T 3hmm_A          125 GKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAM  204 (303)
T ss_dssp             CBCCEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHH
T ss_pred             CCCCEeeccCCcccEEECCCCCEEEEeCCCCccccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhH
Confidence            1238999999999999999999999999999866443322  122345799999999998754      36789999999


Q ss_pred             HHHHHHHHhcCcccccccccCC-----CcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccC
Q 044022          157 GAFLFELLAGRIHIWDLLKDTH-----DHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNN  231 (241)
Q Consensus       157 G~~~~~~~~g~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~  231 (241)
                      ||++|||+||.+||........     .......+...........    .+.++..   .........+.+|+.+||+.
T Consensus       205 Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~----rp~~p~~---~~~~~~~~~l~~li~~cl~~  277 (303)
T 3hmm_A          205 GLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKL----RPNIPNR---WQSCEALRVMAKIMRECWYA  277 (303)
T ss_dssp             HHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCC----CCCCCGG---GGSSHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHCCCCCCccccccccchhcccccchHHHHHHHHhcccC----CCCCCcc---ccchHHHHHHHHHHHHHccc
Confidence            9999999999888754221110     0011111122222111111    1111111   11124557789999999999


Q ss_pred             CCCCCCCCCC
Q 044022          232 SPEDRPTMVD  241 (241)
Q Consensus       232 ~p~~Rpt~~e  241 (241)
                      ||++|||+.|
T Consensus       278 dP~~RPt~~e  287 (303)
T 3hmm_A          278 NGAARLTALR  287 (303)
T ss_dssp             SGGGSCCHHH
T ss_pred             CHhHCcCHHH
Confidence            9999999853

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=1.5e-48  Score=313.58  Aligned_cols=213  Identities=22%  Similarity=0.318  Sum_probs=155.6

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCC------------cceEEEEecCCCCHHHhhcCCCc---
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTP------------IPILVFQSVEYGTLRDCIFGAPL---   65 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~------------~~~lv~e~~~~~sL~~~l~~~~~---   65 (241)
                      ||...........+++.+|+++|++|+|||||+++++|...+            ..|+|||||++|+|.+++.....   
T Consensus        35 iK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~  114 (299)
T 4g31_A           35 IKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEE  114 (299)
T ss_dssp             EEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC----------CEEEEEEEECCCSCCHHHHHHTCCSGGG
T ss_pred             EEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCccccccccCCCcEEEEEEecCCCCcHHHHHHhcCCCCh
Confidence            455544344445678999999999999999999999997644            36899999999999999976532   


Q ss_pred             ----hHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcc----------eeecccc
Q 044022           66 ----PRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH----------ITTDRVI  131 (241)
Q Consensus        66 ----~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~----------~~~~~~~  131 (241)
                          ....++.||+.||.|||   +++|+||||||+|||++.++.+||+|||+++........          ......+
T Consensus       115 ~~~~~~~~i~~qi~~al~ylH---~~~IiHRDlKp~NILl~~~~~vKl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (299)
T 4g31_A          115 RERSVCLHIFLQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQV  191 (299)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECCCCCC--------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHH---HCcCccccCcHHHeEECCCCcEEEccCccceecCCCccccccccccccccccCCcc
Confidence                25679999999999999   899999999999999999999999999999866443211          1123457


Q ss_pred             cCCCccCcccccccCCCcchhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCc
Q 044022          132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPC  211 (241)
Q Consensus       132 ~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (241)
                      ||+.|+|||++.+..++.++|||||||++|||++   ||....        ......... ....            .+ 
T Consensus       192 GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~~--------~~~~~~~~~-~~~~------------~p-  246 (299)
T 4g31_A          192 GTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQM--------ERVRTLTDV-RNLK------------FP-  246 (299)
T ss_dssp             CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSHH--------HHHHHHHHH-HTTC------------CC-
T ss_pred             cCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCcc--------HHHHHHHHH-hcCC------------CC-
Confidence            9999999999999999999999999999999996   764310        000111111 1110            11 


Q ss_pred             hhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          212 IEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       212 ~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ......++...+|+.+||+.||++|||++|
T Consensus       247 ~~~~~~~~~~~~li~~~L~~dP~~Rps~~e  276 (299)
T 4g31_A          247 PLFTQKYPCEYVMVQDMLSPSPMERPEAIN  276 (299)
T ss_dssp             HHHHHHCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             CCCcccCHHHHHHHHHHcCCChhHCcCHHH
Confidence            111233456788999999999999999853

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=4.4e-45  Score=303.88  Aligned_cols=168  Identities=19%  Similarity=0.254  Sum_probs=137.5

Q ss_pred             Ccccccccc-cccHHHHHHHHHHHHhcCCCcccceeeeeeeC------CcceEEEEecCCCCHHHhhcCCCc----hHHH
Q 044022            1 MKFYGHEYH-RHTYGSCINNITYAAQMSHNHILKRIGCCLQT------PIPILVFQSVEYGTLRDCIFGAPL----PRLK   69 (241)
Q Consensus         1 iK~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~------~~~~lv~e~~~~~sL~~~l~~~~~----~~~~   69 (241)
                      ||++..... ....+++.+|+++|++|+|||||++++++...      +..|+|||||. |+|.+++.....    ....
T Consensus        84 iK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~~~ivmE~~~-g~L~~~i~~~~~l~~~~~~~  162 (398)
T 4b99_A           84 IKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKSVYVVLDLME-SDLHQIIHSSQPLTLEHVRY  162 (398)
T ss_dssp             EEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCCEEEEEECCS-EEHHHHHTSSSCCCHHHHHH
T ss_pred             EEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCEEEEEEeCCC-CCHHHHHHhcCCCCHHHHHH
Confidence            455543332 23456789999999999999999999987643      57899999996 689999876532    4678


Q ss_pred             HHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCC--cceeecccccCCCccCccccccc-C
Q 044022           70 IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGE--THITTDRVIGTRGYSAPEYISIC-V  146 (241)
Q Consensus        70 ~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~--~~~~~~~~~~~~~~~aPE~~~~~-~  146 (241)
                      ++.||+.||.|||   +++|+||||||+|||++.++.+||+|||+++......  ........+||+.|+|||++.+. .
T Consensus       163 ~~~qil~al~ylH---~~~iiHRDlKP~NIl~~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~  239 (398)
T 4b99_A          163 FLYQLLRGLKYMH---SAQVIHRDLKPSNLLVNENCELKIGDFGMARGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHE  239 (398)
T ss_dssp             HHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTCCEEECCCTTCBCC-------CCCCCSSCCCCTTCCHHHHTTCSC
T ss_pred             HHHHHHHHHHHHH---HCcCcCCCcCccccccCCCCCEEEeecceeeecccCccccccccccceeChHhcCHHHhcCCCC
Confidence            9999999999999   9999999999999999999999999999998654321  11223456899999999998875 5


Q ss_pred             CCcchhhHHHHHHHHHHHhcCccccc
Q 044022          147 LNEKSNVFSFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       147 ~~~~~Di~s~G~~~~~~~~g~~p~~~  172 (241)
                      ++.++||||+||++|+|++|++||..
T Consensus       240 ~~~~~DiWSlG~il~ell~G~~pF~g  265 (398)
T 4b99_A          240 YTQAIDLWSVGCIFGEMLARRQLFPG  265 (398)
T ss_dssp             CCTHHHHHHHHHHHHHHHHTSCSSCC
T ss_pred             CCChhheehhHHHHHHHHHCCCCCCC
Confidence            68999999999999999999999954

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=3.7e-45  Score=301.18  Aligned_cols=158  Identities=18%  Similarity=0.291  Sum_probs=135.3

Q ss_pred             cHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc-hHHHHHHHHHHHhchhhcCCCCCc
Q 044022           12 TYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL-PRLKIASDIVNSLAYLHFGFPRPI   89 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-~~~~~~~~i~~~l~~lh~~~~~~i   89 (241)
                      ...++.+|+++|+.+ .|||||+++++|...++.|+||||+++|+|.++++..+. ....++.|++.||.|||   +++|
T Consensus        62 ~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~~lvmE~~~g~~L~~~~~~l~~~~~~~~~~qll~al~ylH---~~gI  138 (361)
T 4f9c_A           62 HPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHVVIAMPYLEHESFLDILNSLSFQEVREYMLNLFKALKRIH---QFGI  138 (361)
T ss_dssp             CHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTEEEEEEECCCCCCHHHHHTTCCHHHHHHHHHHHHHHHHHHH---HTTE
T ss_pred             CHHHHHHHHHHHHHhcCCCCCceEEEEEEECCEEEEEEeCCCcccHHHHHcCCCHHHHHHHHHHHHHHHHHHH---HCCe
Confidence            456788999999998 699999999999999999999999999999999976544 46789999999999999   9999


Q ss_pred             eeccCCCCCeeecCC-CCeEEeeccCceecCCCCcc--------------------------eeecccccCCCccCcccc
Q 044022           90 VLRNFKTQNILFNEE-NVAKWFDFLLSISIPEGETH--------------------------ITTDRVIGTRGYSAPEYI  142 (241)
Q Consensus        90 vh~dl~~~nil~~~~-~~~~l~df~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~aPE~~  142 (241)
                      +||||||+|||++.+ +.+||+|||+++........                          ......+||+.|+|||++
T Consensus       139 iHRDiKPeNiLl~~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l  218 (361)
T 4f9c_A          139 VHRDVKPSNFLYNRRLKKYALVDFGLAQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVL  218 (361)
T ss_dssp             ECSCCSGGGEEEETTTTEEEECCCTTCEECTTCSCGGGGGC--------------------------CCCCGGGCCHHHH
T ss_pred             EeCcCCHHHeEEeCCCCeEEECcCCCCcccCCccccccccccccccccccccccccccccccccccccccCccccCHHHH
Confidence            999999999999877 79999999999765432110                          112345799999999999


Q ss_pred             ccc-CCCcchhhHHHHHHHHHHHhcCccccc
Q 044022          143 SIC-VLNEKSNVFSFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       143 ~~~-~~~~~~Di~s~G~~~~~~~~g~~p~~~  172 (241)
                      .+. .++.++||||+||++|+|++|+.||..
T Consensus       219 ~~~~~y~~~~DiWSlG~il~ell~G~~Pf~~  249 (361)
T 4f9c_A          219 TKCPNQTTAIDMWSAGVIFLSLLSGRYPFYK  249 (361)
T ss_dssp             TTCSCCCTHHHHHHHHHHHHHHHHTCSSSSC
T ss_pred             cCCCCCCCccchhhhHHHHHHHHHCCCCCCC
Confidence            876 488999999999999999999999965

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=4.5e-44  Score=310.80  Aligned_cols=204  Identities=16%  Similarity=0.206  Sum_probs=164.2

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC--c---hHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP--L---PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~--~---~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ..+.+.+|+++|++|+|||||+++++|...+.+++|||||+||+|.+++....  .   ....++.||+.||.|||   +
T Consensus       197 ~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~~~gg~L~~~i~~~~~~l~e~~~~~~~~qi~~al~ylH---~  273 (573)
T 3uto_A          197 DKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMH---E  273 (573)
T ss_dssp             HHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEECCCCCBHHHHHTCTTSCEEHHHHHHHHHHHHHHHHHHH---H
T ss_pred             hHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeecCCCcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            45678899999999999999999999999999999999999999999986432  2   46789999999999999   9


Q ss_pred             CCceeccCCCCCeeecCC--CCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHH
Q 044022           87 RPIVLRNFKTQNILFNEE--NVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~--~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~  164 (241)
                      ++|+||||||+|||++.+  +.+||+|||+++........   ...+||+.|+|||++.+..++.++||||+||++|+|+
T Consensus       274 ~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~~~~---~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml  350 (573)
T 3uto_A          274 NNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSV---KVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILL  350 (573)
T ss_dssp             TTEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTTSEE---EEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHH
T ss_pred             CCeeeccCChhhccccCCCCCCEEEeeccceeEccCCCce---eeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence            999999999999999854  89999999999887654322   3357999999999999999999999999999999999


Q ss_pred             hcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          165 AGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       165 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +|..||...         ...+......... . . .......        ..++.+.+|+.+||..||++|||++|
T Consensus       351 ~G~~Pf~~~---------~~~~~~~~i~~~~-~-~-~~~~~~~--------~~s~~~~dli~~~L~~dp~~R~t~~e  407 (573)
T 3uto_A          351 SGLSPFGGE---------NDDETLRNVKSCD-W-N-MDDSAFS--------GISEDGKDFIRKLLLADPNTRMTIHQ  407 (573)
T ss_dssp             HSCCSSCCS---------SHHHHHHHHHTTC-C-C-CCSGGGT--------TSCHHHHHHHHTTSCSSGGGSCCHHH
T ss_pred             HCCCCCCCc---------CHHHHHHHHHhCC-C-C-CCccccc--------CCCHHHHHHHHHHccCChhHCcCHHH
Confidence            999999642         1222222222111 1 0 1111111        22357889999999999999999753

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=2.8e-43  Score=305.99  Aligned_cols=199  Identities=19%  Similarity=0.208  Sum_probs=156.9

Q ss_pred             HHHHHHH---HHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCC
Q 044022           13 YGSCINN---ITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        13 ~~~~~~e---~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ...+.+|   +.+++.++|||||+++++|.+.+.+|+|||||+||+|.+++.....    ....++.||+.||.|||   
T Consensus       233 ~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~lylVmEy~~GGdL~~~l~~~~~l~E~~a~~y~~qIl~aL~yLH---  309 (689)
T 3v5w_A          233 ETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMH---  309 (689)
T ss_dssp             HHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEEEEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            3344444   5666778999999999999999999999999999999999865432    46789999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc-cCCCcchhhHHHHHHHHHHH
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI-CVLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~~~~~~  164 (241)
                      +++|+||||||+|||++.+|.+||+|||+|........    .+.+||+.|+|||++.. ..++.++|+||+||++|+|+
T Consensus       310 ~~gIiHRDLKPeNILld~~G~vKL~DFGlA~~~~~~~~----~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmL  385 (689)
T 3v5w_A          310 NRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKP----HASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLL  385 (689)
T ss_dssp             TTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSCCC----CSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHH
T ss_pred             HCCccccCCchHHeEEeCCCCEEecccceeeecCCCCC----CCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999987655432    34589999999999964 57899999999999999999


Q ss_pred             hcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCC
Q 044022          165 AGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM  239 (241)
Q Consensus       165 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~  239 (241)
                      +|++||......      ...+......... . ..     ...        .++.+.+|+.+||..||++|++.
T Consensus       386 tG~~PF~~~~~~------~~~~i~~~i~~~~-~-~~-----p~~--------~S~~a~dLI~~lL~~dP~~Rl~~  439 (689)
T 3v5w_A          386 RGHSPFRQHKTK------DKHEIDRMTLTMA-V-EL-----PDS--------FSPELRSLLEGLLQRDVNRRLGC  439 (689)
T ss_dssp             HSSCTTCGGGCC------CHHHHHHHHHHCC-C-CC-----CTT--------SCHHHHHHHHHHTCSCGGGCTTC
T ss_pred             hCCCCCCCCChH------HHHHHHHhhcCCC-C-CC-----Ccc--------CCHHHHHHHHHHccCCHhHCCCC
Confidence            999999652111      1111111111111 0 11     111        22578899999999999999984

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=100.00  E-value=1.7e-42  Score=282.38  Aligned_cols=232  Identities=28%  Similarity=0.444  Sum_probs=178.3

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----c---hHHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----L---PRLKIAS   72 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----~---~~~~~~~   72 (241)
                      ||++..........++.+|++++++++||||+++++++...+..++||||+++|+|.+++....     .   .+..++.
T Consensus        59 vK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~  138 (326)
T 3uim_A           59 VKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIAL  138 (326)
T ss_dssp             EEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEEECCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHH
T ss_pred             EEEeccccCchHHHHHHHHHHHHHhccCCCccceEEEEecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHH
Confidence            3555544444455579999999999999999999999999999999999999999999987642     1   4678999


Q ss_pred             HHHHHhchhhcCCCC---CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCc
Q 044022           73 DIVNSLAYLHFGFPR---PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNE  149 (241)
Q Consensus        73 ~i~~~l~~lh~~~~~---~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~  149 (241)
                      +++.||.|||   +.   +++||||||+|||++.++.++|+|||.+.......... .....||+.|+|||++.+..++.
T Consensus       139 ~i~~~l~~lH---~~~~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~  214 (326)
T 3uim_A          139 GSARGLAYLH---DHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHV-TTAVRGTIGHIAPEYLSTGKSSE  214 (326)
T ss_dssp             HHHHHHHHHH---HSSSSCEECCCCSGGGEEECTTCCEEECCCSSCEECCSSSSCE-ECCCCSCGGGCCHHHHHHSEECH
T ss_pred             HHHHHHHHHH---hCCCCCeEeCCCchhhEEECCCCCEEeccCccccccCcccccc-cccccCCcCccCHHHhccCCCCc
Confidence            9999999999   66   99999999999999999999999999998765433322 23456899999999998888999


Q ss_pred             chhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhc
Q 044022          150 KSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECV  229 (241)
Q Consensus       150 ~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl  229 (241)
                      ++||||||+++|+|++|..||..... .........++..............+.......+    ...+..+.+++.+||
T Consensus       215 ~~Di~slG~il~~l~~g~~pf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~li~~cl  289 (326)
T 3uim_A          215 KTDVFGYGVMLLELITGQRAFDLARL-ANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYK----DEEVEQLIQVALLCT  289 (326)
T ss_dssp             HHHHHHHHHHHHHHHHCCCSBCHHHH-TTTSCSBHHHHHTTTTSSCCSTTSSCTTCTTSCC----HHHHHHHHHHHHHHT
T ss_pred             cccchhHHHHHHHHHhCCCccccccc-ccccchhHHHHHHHHhhchhhhhhcChhhccccC----HHHHHHHHHHHHHHh
Confidence            99999999999999999999964211 1112233444444444444444443433333322    466788999999999


Q ss_pred             cCCCCCCCCCCC
Q 044022          230 NNSPEDRPTMVD  241 (241)
Q Consensus       230 ~~~p~~Rpt~~e  241 (241)
                      +.||++|||++|
T Consensus       290 ~~dP~~Rps~~e  301 (326)
T 3uim_A          290 QSSPMERPKMSE  301 (326)
T ss_dssp             CSCGGGSCCHHH
T ss_pred             CcCCccCCCHHH
Confidence            999999999853

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=100.00  E-value=5.1e-42  Score=279.07  Aligned_cols=221  Identities=31%  Similarity=0.466  Sum_probs=173.7

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC--------chHHHHHHHHHHHhchhh
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP--------LPRLKIASDIVNSLAYLH   82 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~--------~~~~~~~~~i~~~l~~lh   82 (241)
                      ...+.+.+|++++++++||||+++++++...+..++||||+++|+|.+++....        ..++.++.+++.||.|||
T Consensus        77 ~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH  156 (321)
T 2qkw_B           77 QGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLH  156 (321)
T ss_dssp             SHHHHHHHHHHGGGSCCCTTBCCEEEECCCTTCCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhc
Confidence            456789999999999999999999999999999999999999999999986542        146789999999999999


Q ss_pred             cCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHH
Q 044022           83 FGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFE  162 (241)
Q Consensus        83 ~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~  162 (241)
                         +.+++||||||+||+++.++.+||+|||.+................|++.|+|||++.+..++.++||||||+++|+
T Consensus       157 ---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~e  233 (321)
T 2qkw_B          157 ---TRAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFE  233 (321)
T ss_dssp             ---HTTEECSCCCSTTEEECTTCCEEECCCTTCEECSSSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHH
T ss_pred             ---CCCeecCCCCHHHEEECCCCCEEEeecccccccccccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHH
Confidence               89999999999999999999999999999986543322222234468899999999988899999999999999999


Q ss_pred             HHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          163 LLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       163 ~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      |++|+.||......   ......++..............++......    ....+..+.+++.+||+.||++|||++|
T Consensus       234 ll~g~~p~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~li~~~l~~dP~~Rps~~e  305 (321)
T 2qkw_B          234 VLCARSAIVQSLPR---EMVNLAEWAVESHNNGQLEQIVDPNLADKI----RPESLRKFGDTAVKCLALSSEDRPSMGD  305 (321)
T ss_dssp             HHHCCTTCSCSSSS---SCCCHHHHTHHHHTTTCCCSSSSSSCTTCS----CHHHHHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             HHhCCCcccccCcH---HHHHHHHHhhhccccccHHHhcChhhcccc----CHHHHHHHHHHHHHHcCCCcccCcCHHH
Confidence            99999999653222   112222222222333333333333322222    2366788999999999999999999853

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=100.00  E-value=1.2e-42  Score=287.99  Aligned_cols=215  Identities=20%  Similarity=0.303  Sum_probs=168.8

Q ss_pred             CcccccccccccHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC---------------
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP---------------   64 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~---------------   64 (241)
                      ||++.........+.+.+|+++++++ +||||++++++|...+..++||||+++|+|.+++....               
T Consensus       118 vK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~  197 (370)
T 2psq_A          118 VKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPE  197 (370)
T ss_dssp             EEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTCCC-----------CC
T ss_pred             EEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccCCCEEEEEEcCCCCCHHHHHHhhCCcccccccccccccc
Confidence            35555444445567899999999999 89999999999999999999999999999999986532               


Q ss_pred             -----chHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCc
Q 044022           65 -----LPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAP  139 (241)
Q Consensus        65 -----~~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aP  139 (241)
                           ...+.++.||+.||.|||   +++++||||||+|||++.++.+||+|||++................+++.|+||
T Consensus       198 ~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aP  274 (370)
T 2psq_A          198 EQMTFKDLVSCTYQLARGMEYLA---SQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAP  274 (370)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCH
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHH---hCCeeccccchhhEEECCCCCEEEccccCCcccCcccceecccCCCcccceECH
Confidence                 135678999999999999   899999999999999999999999999999876544332222334567889999


Q ss_pred             ccccccCCCcchhhHHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHH
Q 044022          140 EYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQL  218 (241)
Q Consensus       140 E~~~~~~~~~~~Di~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (241)
                      |++.+..++.++||||||+++|+|++ |..||.....         .+.... ...+.....     ..        ..+
T Consensus       275 E~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~---------~~~~~~-~~~~~~~~~-----~~--------~~~  331 (370)
T 2psq_A          275 EALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPV---------EELFKL-LKEGHRMDK-----PA--------NCT  331 (370)
T ss_dssp             HHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCG---------GGHHHH-HHTTCCCCC-----CT--------TSC
T ss_pred             hHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCH---------HHHHHH-HhcCCCCCC-----CC--------CCC
Confidence            99998899999999999999999999 9999965211         111111 112211111     11        123


Q ss_pred             HHHHHHHHHhccCCCCCCCCCCC
Q 044022          219 HASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       219 ~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ..+.+++.+||+.||++|||+.|
T Consensus       332 ~~l~~li~~~l~~dP~~Rpt~~e  354 (370)
T 2psq_A          332 NELYMMMRDCWHAVPSQRPTFKQ  354 (370)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             HHHHHHHHHHcCCChhhCcCHHH
Confidence            57899999999999999999853

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=100.00  E-value=1e-41  Score=274.57  Aligned_cols=205  Identities=17%  Similarity=0.251  Sum_probs=165.3

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc---hHHHHHHHHHHHhchhhcCCCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL---PRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ...+.+.+|+.++++++||||+++++++...+..++||||+++++|.+++.....   ....++.+++.||.|||   +.
T Consensus        59 ~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~  135 (297)
T 3fxz_A           59 PKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLH---SN  135 (297)
T ss_dssp             SCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHSCCCHHHHHHHHHHHHHHHHHHH---HT
T ss_pred             cHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEECCCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH---hC
Confidence            3467789999999999999999999999999999999999999999999876533   46789999999999999   89


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcC
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR  167 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~  167 (241)
                      +++||||||+|||++.++.+||+|||++.........  .....||+.|+|||++.+..++.++||||||+++|+|++|.
T Consensus       136 ~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~  213 (297)
T 3fxz_A          136 QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK--RSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGE  213 (297)
T ss_dssp             TEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTCC--BCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSS
T ss_pred             CceeCCCCHHHEEECCCCCEEEeeCCCceecCCcccc--cCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999998876543322  23457899999999999999999999999999999999999


Q ss_pred             cccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          168 IHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       168 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      .||....         ..+.......... .....   ..        ..+..+.+++.+||+.||++|||++|
T Consensus       214 ~pf~~~~---------~~~~~~~~~~~~~-~~~~~---~~--------~~~~~~~~li~~~l~~dp~~Rps~~e  266 (297)
T 3fxz_A          214 PPYLNEN---------PLRALYLIATNGT-PELQN---PE--------KLSAIFRDFLNRCLEMDVEKRGSAKE  266 (297)
T ss_dssp             CTTTTSC---------HHHHHHHHHHHCS-CCCSC---GG--------GSCHHHHHHHHHHSCSSTTTSCCHHH
T ss_pred             CCCCCCC---------HHHHHHHHHhCCC-CCCCC---cc--------ccCHHHHHHHHHHccCChhHCcCHHH
Confidence            9995421         1111111111111 11111   11        22357889999999999999999753

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=100.00  E-value=8.3e-42  Score=278.61  Aligned_cols=211  Identities=19%  Similarity=0.270  Sum_probs=166.1

Q ss_pred             Cccccccc-ccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHH
Q 044022            1 MKFYGHEY-HRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIV   75 (241)
Q Consensus         1 iK~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~   75 (241)
                      ||++.... .....+++.+|++++++++||||+++++++...+..++||||+++++|.+++....    .....++.|++
T Consensus        45 iK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~  124 (328)
T 3fe3_A           45 IKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIMEYASGGEVFDYLVAHGRMKEKEARSKFRQIV  124 (328)
T ss_dssp             EEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCTTCBHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             EEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEECCCCCcHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            35544332 23456778899999999999999999999999999999999999999999985432    24678999999


Q ss_pred             HHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCC-cchhhH
Q 044022           76 NSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLN-EKSNVF  154 (241)
Q Consensus        76 ~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~-~~~Di~  154 (241)
                      .||.|||   +.+++||||||+||+++.++.+||+|||++........   .....||+.|+|||++.+..+. .++|||
T Consensus       125 ~al~~lH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~Diw  198 (328)
T 3fe3_A          125 SAVQYCH---QKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGGK---LDAFCGAPPYAAPELFQGKKYDGPEVDVW  198 (328)
T ss_dssp             HHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECSTTCCGGGSSSCG---GGTTSSSGGGCCHHHHHTCCCCSHHHHHH
T ss_pred             HHHHHHH---HCCEeccCCCHHHEEEcCCCCEEEeeccCceecCCCCc---cccccCCcceeCcccccCCCcCCchhhhh
Confidence            9999999   89999999999999999999999999999976544322   2345789999999999887765 789999


Q ss_pred             HHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCC
Q 044022          155 SFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPE  234 (241)
Q Consensus       155 s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~  234 (241)
                      |+|+++|+|++|+.||...         ...+....... +.. .     +..        ..+..+.+++.+||..||+
T Consensus       199 slG~il~ell~g~~pf~~~---------~~~~~~~~i~~-~~~-~-----~p~--------~~s~~~~~li~~~L~~dP~  254 (328)
T 3fe3_A          199 SLGVILYTLVSGSLPFDGQ---------NLKELRERVLR-GKY-R-----IPF--------YMSTDCENLLKRFLVLNPI  254 (328)
T ss_dssp             HHHHHHHHHHHSSCSSCCS---------SHHHHHHHHHH-CCC-C-----CCT--------TSCHHHHHHHHHHCCSSTT
T ss_pred             hhHHHHHHHHhCCCCCCCC---------CHHHHHHHHHh-CCC-C-----CCC--------CCCHHHHHHHHHHCCCChh
Confidence            9999999999999999542         12222222221 111 0     111        1225688999999999999


Q ss_pred             CCCCCCC
Q 044022          235 DRPTMVD  241 (241)
Q Consensus       235 ~Rpt~~e  241 (241)
                      +|||++|
T Consensus       255 ~R~t~~e  261 (328)
T 3fe3_A          255 KRGTLEQ  261 (328)
T ss_dssp             TSCCHHH
T ss_pred             HCcCHHH
Confidence            9999853

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=100.00  E-value=7.8e-43  Score=289.91  Aligned_cols=215  Identities=22%  Similarity=0.307  Sum_probs=166.1

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIV   75 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~   75 (241)
                      ||.+.........++|.+|++++++++||||+++++++...+..++||||+++|+|.+++....     ...+.++.|++
T Consensus       144 vK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~  223 (377)
T 3cbl_A          144 VKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAA  223 (377)
T ss_dssp             EEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHH
T ss_pred             EEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence            3555444333455678999999999999999999999999999999999999999999986532     24678999999


Q ss_pred             HHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHH
Q 044022           76 NSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFS  155 (241)
Q Consensus        76 ~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s  155 (241)
                      .||.|||   +.+++||||||+|||++.++.+||+|||++................++..|+|||.+.+..++.++||||
T Consensus       224 ~~l~~LH---~~~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dvws  300 (377)
T 3cbl_A          224 AGMEYLE---SKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYAASGGLRQVPVKWTAPEALNYGRYSSESDVWS  300 (377)
T ss_dssp             HHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCGGGCEECTTSEEECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHH
T ss_pred             HHHHHHH---HCCcCCcccCHHHEEEcCCCcEEECcCCCceecCCCceeecCCCCCCCcCcCCHhHhccCCCCchhhHHH
Confidence            9999999   8999999999999999999999999999998654432211112223567799999999888999999999


Q ss_pred             HHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCC
Q 044022          156 FGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPE  234 (241)
Q Consensus       156 ~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~  234 (241)
                      ||+++|||++ |..||.....         .+ .......+.....+     .        ..+..+.+++.+||+.||+
T Consensus       301 lG~il~el~t~g~~p~~~~~~---------~~-~~~~~~~~~~~~~~-----~--------~~~~~l~~li~~cl~~dP~  357 (377)
T 3cbl_A          301 FGILLWETFSLGASPYPNLSN---------QQ-TREFVEKGGRLPCP-----E--------LCPDAVFRLMEQCWAYEPG  357 (377)
T ss_dssp             HHHHHHHHHTTSCCSSTTSCH---------HH-HHHHHHTTCCCCCC-----T--------TCCHHHHHHHHHHTCSSGG
T ss_pred             HHHHHHHHHhCCCCCCCCCCH---------HH-HHHHHHcCCCCCCC-----C--------CCCHHHHHHHHHHcCCCch
Confidence            9999999998 9999865211         11 11222222111111     1        1225788999999999999


Q ss_pred             CCCCCCC
Q 044022          235 DRPTMVD  241 (241)
Q Consensus       235 ~Rpt~~e  241 (241)
                      +|||++|
T Consensus       358 ~Rps~~~  364 (377)
T 3cbl_A          358 QRPSFST  364 (377)
T ss_dssp             GSCCHHH
T ss_pred             hCcCHHH
Confidence            9999853

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=100.00  E-value=9.4e-42  Score=277.71  Aligned_cols=218  Identities=22%  Similarity=0.234  Sum_probs=163.2

Q ss_pred             HHHHHHHHHHHHhcCCCcccceeeeeeeCC----cceEEEEecCCCCHHHhhcCCCc---hHHHHHHHHHHHhchhhcCC
Q 044022           13 YGSCINNITYAAQMSHNHILKRIGCCLQTP----IPILVFQSVEYGTLRDCIFGAPL---PRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~----~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ...+.+|+.++++++||||+++++++....    .+++||||+++|+|.+++.....   .+..++.|++.||.|||   
T Consensus        62 ~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~qi~~al~~LH---  138 (322)
T 3soc_A           62 SWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKANVVSWNELCHIAETMARGLAYLH---  138 (322)
T ss_dssp             HHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHT---
T ss_pred             HHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEEEEecCCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH---
Confidence            445667999999999999999999998755    36999999999999999976543   46789999999999999   


Q ss_pred             CC----------CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc-----cCCCcc
Q 044022           86 PR----------PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI-----CVLNEK  150 (241)
Q Consensus        86 ~~----------~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-----~~~~~~  150 (241)
                      +.          +++||||||+|||++.++.+||+|||.+................||+.|+|||++.+     ..++.+
T Consensus       139 ~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~DFg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~  218 (322)
T 3soc_A          139 EDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLR  218 (322)
T ss_dssp             CCEEEETTEEECEEECSCCSGGGEEECTTCCEEECCCTTCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHH
T ss_pred             hhccccccccCCCEEeCCCChHhEEECCCCeEEEccCCcccccccccCccccccCccCccccCHhhcccccccCcCCCcc
Confidence            88          999999999999999999999999999987665443333344578999999999986     355678


Q ss_pred             hhhHHHHHHHHHHHhcCcccccccccCCCcc-------cchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHH
Q 044022          151 SNVFSFGAFLFELLAGRIHIWDLLKDTHDHG-------CFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQ  223 (241)
Q Consensus       151 ~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (241)
                      +||||||+++|+|++|+.||...........       ....+..... ....    ..+.+...   ......+..+.+
T Consensus       219 ~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~---~~~~~~~~~l~~  290 (322)
T 3soc_A          219 IDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHPSLEDMQEVV-VHKK----KRPVLRDY---WQKHAGMAMLCE  290 (322)
T ss_dssp             HHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHCSSCCHHHHHHHH-TTSC----CCCCCCGG---GGSSHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhccCCchhhhhhhh-hccc----CCCCcccc---ccccchHHHHHH
Confidence            9999999999999999999965322211100       0111111111 1111    11111111   111245577999


Q ss_pred             HHHHhccCCCCCCCCCCC
Q 044022          224 LTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       224 l~~~cl~~~p~~Rpt~~e  241 (241)
                      ++.+||+.||++|||++|
T Consensus       291 li~~cl~~dP~~Rps~~e  308 (322)
T 3soc_A          291 TIEECWDHDAEARLSAGC  308 (322)
T ss_dssp             HHHHHTCSSGGGSCCHHH
T ss_pred             HHHHHccCChhhCcCHHH
Confidence            999999999999999853

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=100.00  E-value=1.5e-41  Score=275.09  Aligned_cols=214  Identities=25%  Similarity=0.318  Sum_probs=159.1

Q ss_pred             Cccccccc-ccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc-------hHHHHHH
Q 044022            1 MKFYGHEY-HRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL-------PRLKIAS   72 (241)
Q Consensus         1 iK~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-------~~~~~~~   72 (241)
                      ||++.... .....+++.+|++++++++||||+++++++...+..++||||+++|+|.+++.....       .++.++.
T Consensus        65 vK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~  144 (309)
T 3p86_A           65 VKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAY  144 (309)
T ss_dssp             EEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEEEEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHH
T ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEEEEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHH
Confidence            35544322 234457799999999999999999999999999999999999999999999976532       3678999


Q ss_pred             HHHHHhchhhcCCCCC--ceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcc
Q 044022           73 DIVNSLAYLHFGFPRP--IVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEK  150 (241)
Q Consensus        73 ~i~~~l~~lh~~~~~~--ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~  150 (241)
                      |++.||+|||   +.+  ++||||||+||+++.++.+||+|||++........  ......||+.|+|||++.+..++.+
T Consensus       145 qi~~aL~~LH---~~~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~  219 (309)
T 3p86_A          145 DVAKGMNYLH---NRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTFL--SSKSAAGTPEWMAPEVLRDEPSNEK  219 (309)
T ss_dssp             HHHHHHHHHH---TSSSCCCCTTCCGGGEEECTTCCEEECCCC-------------------CCTTSCHHHHTTCCCCTT
T ss_pred             HHHHHHHHHH---cCCCCEECCCCChhhEEEeCCCcEEECCCCCCcccccccc--ccccCCCCccccChhhhcCCCCCch
Confidence            9999999999   888  99999999999999999999999999875433221  1234568999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhcc
Q 044022          151 SNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVN  230 (241)
Q Consensus       151 ~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~  230 (241)
                      +||||||+++|+|++|+.||....         ..+............     .+...        .+..+.+++.+||+
T Consensus       220 ~DiwslG~il~elltg~~Pf~~~~---------~~~~~~~~~~~~~~~-----~~~~~--------~~~~l~~li~~~l~  277 (309)
T 3p86_A          220 SDVYSFGVILWELATLQQPWGNLN---------PAQVVAAVGFKCKRL-----EIPRN--------LNPQVAAIIEGCWT  277 (309)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTTTSC---------HHHHHHHHHHSCCCC-----CCCTT--------SCHHHHHHHHHHTC
T ss_pred             hhHHHHHHHHHHHHhCCCCCCCCC---------HHHHHHHHHhcCCCC-----CCCcc--------CCHHHHHHHHHHcc
Confidence            999999999999999999996521         111111111111111     11111        22578899999999


Q ss_pred             CCCCCCCCCCC
Q 044022          231 NSPEDRPTMVD  241 (241)
Q Consensus       231 ~~p~~Rpt~~e  241 (241)
                      .||++|||++|
T Consensus       278 ~dP~~Rps~~~  288 (309)
T 3p86_A          278 NEPWKRPSFAT  288 (309)
T ss_dssp             SSGGGSCCHHH
T ss_pred             CChhhCcCHHH
Confidence            99999999753

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=100.00  E-value=8.8e-42  Score=278.02  Aligned_cols=217  Identities=22%  Similarity=0.251  Sum_probs=164.3

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVN   76 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~   76 (241)
                      ||++.........+.+.+|+.++++++||||+++++++...+..++||||+++++|.+++.....    ....++.|++.
T Consensus        37 vK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~  116 (323)
T 3tki_A           37 VKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMA  116 (323)
T ss_dssp             EEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCTTEEGGGGSBTTTBCCHHHHHHHHHHHHH
T ss_pred             EEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEEcCCCCcHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence            35554333334457789999999999999999999999999999999999999999999976532    56789999999


Q ss_pred             HhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCC-CcchhhHH
Q 044022           77 SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVL-NEKSNVFS  155 (241)
Q Consensus        77 ~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~-~~~~Di~s  155 (241)
                      ||.|||   +.+++||||||+|||++.++.+||+|||++................||+.|+|||++.+..+ +.++||||
T Consensus       117 aL~~LH---~~givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Diws  193 (323)
T 3tki_A          117 GVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWS  193 (323)
T ss_dssp             HHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHH
T ss_pred             HHHHHH---HCCccccccchHHEEEeCCCCEEEEEeeccceeccCCcccccCCCccCcCccCcHHhccCCCCCCcccHHH
Confidence            999999   89999999999999999999999999999976543332222344578999999999987765 67899999


Q ss_pred             HHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCC
Q 044022          156 FGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPED  235 (241)
Q Consensus       156 ~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~  235 (241)
                      ||+++|+|++|..||.......       .. ..........   .. ..         ...+..+.+|+.+||+.||++
T Consensus       194 lG~il~~ll~g~~pf~~~~~~~-------~~-~~~~~~~~~~---~~-~~---------~~~~~~~~~li~~~L~~dP~~  252 (323)
T 3tki_A          194 CGIVLTAMLAGELPWDQPSDSC-------QE-YSDWKEKKTY---LN-PW---------KKIDSAPLALLHKILVENPSA  252 (323)
T ss_dssp             HHHHHHHHHHSSCSCSSSCTTS-------HH-HHHHHTTCTT---ST-TG---------GGSCHHHHHHHHHHSCSSTTT
T ss_pred             HHHHHHHHHhCCCCCCCCchHH-------HH-HHHHhccccc---CC-cc---------ccCCHHHHHHHHHHccCChhh
Confidence            9999999999999996522111       11 1111111100   00 00         122356789999999999999


Q ss_pred             CCCCCC
Q 044022          236 RPTMVD  241 (241)
Q Consensus       236 Rpt~~e  241 (241)
                      |||++|
T Consensus       253 R~t~~e  258 (323)
T 3tki_A          253 RITIPD  258 (323)
T ss_dssp             SCCHHH
T ss_pred             CcCHHH
Confidence            999853

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=100.00  E-value=9e-42  Score=276.41  Aligned_cols=215  Identities=23%  Similarity=0.345  Sum_probs=169.3

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----------------
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----------------   64 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----------------   64 (241)
                      ||++.........+.+.+|++++++++||||+++++++...+..++||||+++++|.+++....                
T Consensus        58 vK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~  137 (314)
T 2ivs_A           58 VKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSS  137 (314)
T ss_dssp             EEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTTTSTTEEC---------
T ss_pred             EEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCceEEEEeecCCCCHHHHHHHHhhccCCccccccccccc
Confidence            3555544444556789999999999999999999999999999999999999999999986431                


Q ss_pred             ---------c---hHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeeccccc
Q 044022           65 ---------L---PRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIG  132 (241)
Q Consensus        65 ---------~---~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~  132 (241)
                               .   ....++.+++.||.|||   +.+++|+||||+||+++.++.++|+|||.+................+
T Consensus       138 ~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~  214 (314)
T 2ivs_A          138 SLDHPDERALTMGDLISFAWQISQGMQYLA---EMKLVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRI  214 (314)
T ss_dssp             -------CEECHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCS
T ss_pred             ccccccccCcCHHHHHHHHHHHHHHHHHHH---HCCCcccccchheEEEcCCCCEEEccccccccccccccceeccCCCC
Confidence                     1   36789999999999999   89999999999999999999999999999987655443333344457


Q ss_pred             CCCccCcccccccCCCcchhhHHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCc
Q 044022          133 TRGYSAPEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPC  211 (241)
Q Consensus       133 ~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (241)
                      ++.|+|||.+.+..++.++||||||+++|+|++ |..||......         + ............     ...    
T Consensus       215 ~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~---------~-~~~~~~~~~~~~-----~~~----  275 (314)
T 2ivs_A          215 PVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPPE---------R-LFNLLKTGHRME-----RPD----  275 (314)
T ss_dssp             CGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGG---------G-HHHHHHTTCCCC-----CCT----
T ss_pred             cccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCCHH---------H-HHHHhhcCCcCC-----CCc----
Confidence            788999999998889999999999999999999 99999652211         1 111111121111     111    


Q ss_pred             hhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          212 IEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       212 ~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                          ..++.+.+++.+||+.||++|||++|
T Consensus       276 ----~~~~~~~~li~~~l~~dp~~Rps~~~  301 (314)
T 2ivs_A          276 ----NCSEEMYRLMLQCWKQEPDKRPVFAD  301 (314)
T ss_dssp             ----TCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             ----cCCHHHHHHHHHHccCChhhCcCHHH
Confidence                12257899999999999999999753

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=100.00  E-value=2.1e-41  Score=275.97  Aligned_cols=215  Identities=22%  Similarity=0.326  Sum_probs=166.1

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC--c---hHHHHHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP--L---PRLKIASDIV   75 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~--~---~~~~~~~~i~   75 (241)
                      ||++.........+.|.+|+.++++++||||+++++++...+..++||||+++++|.+++....  .   ....++.+++
T Consensus        82 vK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~  161 (325)
T 3kul_A           82 IKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVG  161 (325)
T ss_dssp             EEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEEEEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHH
T ss_pred             EEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEEEeeCCCCCcHHHHHHhcccCCCHHHHHHHHHHHH
Confidence            3555544444566789999999999999999999999999999999999999999999996542  1   4678999999


Q ss_pred             HHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcc-eeecccccCCCccCcccccccCCCcchhhH
Q 044022           76 NSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH-ITTDRVIGTRGYSAPEYISICVLNEKSNVF  154 (241)
Q Consensus        76 ~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~-~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~  154 (241)
                      .||.|||   +.+++||||||+|||++.++.++|+|||++......... .......+|+.|+|||++.+..++.++|||
T Consensus       162 ~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~  238 (325)
T 3kul_A          162 AGMRYLS---DLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVW  238 (325)
T ss_dssp             HHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCSSCEECC----CCEECC---CCGGGSCHHHHHHCEECHHHHHH
T ss_pred             HHHHHHH---HCCeeCCCCCcceEEECCCCCEEECCCCcccccccCccceeeccCCCCcccccCHhHhcCCCCCcHHHHH
Confidence            9999999   899999999999999999999999999999876543221 122223456789999999988999999999


Q ss_pred             HHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCC
Q 044022          155 SFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSP  233 (241)
Q Consensus       155 s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p  233 (241)
                      |||+++|+|++ |..||....         ..+......... ...     ...        ..+..+.+++.+||+.||
T Consensus       239 slG~il~ell~~g~~p~~~~~---------~~~~~~~~~~~~-~~~-----~~~--------~~~~~l~~li~~~l~~dp  295 (325)
T 3kul_A          239 SFGVVMWEVLAYGERPYWNMT---------NRDVISSVEEGY-RLP-----APM--------GCPHALHQLMLDCWHKDR  295 (325)
T ss_dssp             HHHHHHHHHHTTSCCTTTTSC---------HHHHHHHHHTTC-CCC-----CCT--------TCCHHHHHHHHHHTCSSG
T ss_pred             HHHHHHHHHHcCCCCCcccCC---------HHHHHHHHHcCC-CCC-----CCC--------CcCHHHHHHHHHHccCCh
Confidence            99999999999 999995521         112222221111 111     111        223578999999999999


Q ss_pred             CCCCCCCC
Q 044022          234 EDRPTMVD  241 (241)
Q Consensus       234 ~~Rpt~~e  241 (241)
                      ++|||+.|
T Consensus       296 ~~Rps~~e  303 (325)
T 3kul_A          296 AQRPRFSQ  303 (325)
T ss_dssp             GGSCCHHH
T ss_pred             hhCcCHHH
Confidence            99999753

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=100.00  E-value=3.5e-41  Score=272.78  Aligned_cols=208  Identities=27%  Similarity=0.384  Sum_probs=163.2

Q ss_pred             cccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHHHhchhhcC
Q 044022           10 RHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVNSLAYLHFG   84 (241)
Q Consensus        10 ~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~~l~~lh~~   84 (241)
                      ....+.|.+|++++++++||||+++++++...+..++||||+++++|.+++....     ..+..++.|++.||.|||  
T Consensus        48 ~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH--  125 (310)
T 3s95_A           48 EETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLH--  125 (310)
T ss_dssp             HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEecCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH--
Confidence            3456789999999999999999999999999999999999999999999987532     146789999999999999  


Q ss_pred             CCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCccee------------ecccccCCCccCcccccccCCCcchh
Q 044022           85 FPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHIT------------TDRVIGTRGYSAPEYISICVLNEKSN  152 (241)
Q Consensus        85 ~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~------------~~~~~~~~~~~aPE~~~~~~~~~~~D  152 (241)
                       +.+++||||||+||+++.++.+||+|||.+...........            .....||+.|+|||++.+..++.++|
T Consensus       126 -~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  204 (310)
T 3s95_A          126 -SMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVD  204 (310)
T ss_dssp             -HTTEECSCCSTTSEEECTTSCEEECCCTTCEECC--------------------CCCCSCGGGCCHHHHTTCCCCTHHH
T ss_pred             -hCCccCCCCCcCeEEECCCCCEEEeecccceecccccccccccccccccccccccccCCCcceeCHHHhcCCCCCcHHH
Confidence             89999999999999999999999999999987644322110            11456899999999999999999999


Q ss_pred             hHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCC
Q 044022          153 VFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNS  232 (241)
Q Consensus       153 i~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~  232 (241)
                      |||||+++|+|++|..|+.....................             ....        .+..+.+++.+||+.|
T Consensus       205 i~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~--------~~~~l~~li~~~l~~d  263 (310)
T 3s95_A          205 VFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLDRY-------------CPPN--------CPPSFFPITVRCCDLD  263 (310)
T ss_dssp             HHHHHHHHHHHHHTCCSSTTTSCBCTTSSBCHHHHHHHT-------------CCTT--------CCTTHHHHHHHHTCSS
T ss_pred             HHHHHHHHHHHhcCCCCCcchhhhHHHHhhhhhcccccc-------------CCCC--------CCHHHHHHHHHHccCC
Confidence            999999999999999998653322221221211111111             0011        1145889999999999


Q ss_pred             CCCCCCCCC
Q 044022          233 PEDRPTMVD  241 (241)
Q Consensus       233 p~~Rpt~~e  241 (241)
                      |++|||++|
T Consensus       264 P~~Rps~~~  272 (310)
T 3s95_A          264 PEKRPSFVK  272 (310)
T ss_dssp             GGGSCCHHH
T ss_pred             hhhCcCHHH
Confidence            999999753

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=100.00  E-value=6.6e-41  Score=276.49  Aligned_cols=204  Identities=20%  Similarity=0.261  Sum_probs=163.5

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ..+.+.+|+.++++++||||+++++++...+..++||||+++|+|.+++.....    ....++.||+.||.|||   +.
T Consensus        58 ~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH---~~  134 (361)
T 2yab_A           58 CREEIEREVSILRQVLHPNIITLHDVYENRTDVVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLH---TK  134 (361)
T ss_dssp             CHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHTTCSCCBHHHHHHHHHHHHHHHHHHH---HT
T ss_pred             HHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEEEEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HC
Confidence            357899999999999999999999999999999999999999999999976532    46789999999999999   89


Q ss_pred             CceeccCCCCCeeecCCC----CeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHH
Q 044022           88 PIVLRNFKTQNILFNEEN----VAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL  163 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~----~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~  163 (241)
                      +++||||||+||+++.++    .+||+|||++........   .....||+.|+|||++.+..++.++||||||+++|+|
T Consensus       135 givHrDlkp~NIll~~~~~~~~~vkl~DFG~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~l  211 (361)
T 2yab_A          135 KIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVE---FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYIL  211 (361)
T ss_dssp             TEECCCCSGGGEEESCTTSSSCCEEECCCSSCEECCTTCC---CCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHH
T ss_pred             CcccCCCCHHHEEEeCCCCCccCEEEEecCCceEcCCCCc---cccCCCCccEECchHHcCCCCCccccHHHHHHHHHHH
Confidence            999999999999998877    799999999987654322   1335689999999999988999999999999999999


Q ss_pred             HhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          164 LAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       164 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ++|..||...         ...+....... ... . ..+..        ....+..+.+|+.+||..||++|||++|
T Consensus       212 l~g~~Pf~~~---------~~~~~~~~i~~-~~~-~-~~~~~--------~~~~s~~~~~li~~~L~~dP~~R~t~~e  269 (361)
T 2yab_A          212 LSGASPFLGD---------TKQETLANITA-VSY-D-FDEEF--------FSQTSELAKDFIRKLLVKETRKRLTIQE  269 (361)
T ss_dssp             HHSCCSSCCS---------SHHHHHHHHHT-TCC-C-CCHHH--------HTTSCHHHHHHHHHHSCSSTTTSCCHHH
T ss_pred             HhCCCCCCCC---------CHHHHHHHHHh-cCC-C-CCchh--------ccCCCHHHHHHHHHHCCCChhHCcCHHH
Confidence            9999999552         11122222211 110 0 00000        1122367889999999999999999853

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=100.00  E-value=4.7e-41  Score=279.66  Aligned_cols=215  Identities=20%  Similarity=0.318  Sum_probs=169.9

Q ss_pred             CcccccccccccHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC---------------
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP---------------   64 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~---------------   64 (241)
                      ||++..........++.+|+++++++ +||||+++++++...+..++||||+++|+|.+++....               
T Consensus       106 vK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~  185 (382)
T 3tt0_A          106 VKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPE  185 (382)
T ss_dssp             EEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCC
T ss_pred             EEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccCCceEEEEEecCCCcHHHHHHHhcccccccccccccccc
Confidence            35555544445567899999999999 99999999999999999999999999999999986432               


Q ss_pred             --c---hHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCc
Q 044022           65 --L---PRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAP  139 (241)
Q Consensus        65 --~---~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aP  139 (241)
                        .   .++.++.+++.||.|||   +.+++||||||+|||++.++.+||+|||++................+++.|+||
T Consensus       186 ~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aP  262 (382)
T 3tt0_A          186 EQLSSKDLVSCAYQVARGMEYLA---SKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAP  262 (382)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCH
T ss_pred             cccCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCcceEEEcCCCcEEEcccCcccccccccccccccCCCCCcceeCH
Confidence              1   46789999999999999   899999999999999999999999999999866544332333444577889999


Q ss_pred             ccccccCCCcchhhHHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHH
Q 044022          140 EYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQL  218 (241)
Q Consensus       140 E~~~~~~~~~~~Di~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (241)
                      |++.+..++.++||||||+++|+|++ |..||...         ...+..... ..+.....     ...        .+
T Consensus       263 E~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~---------~~~~~~~~~-~~~~~~~~-----~~~--------~~  319 (382)
T 3tt0_A          263 EALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGV---------PVEELFKLL-KEGHRMDK-----PSN--------CT  319 (382)
T ss_dssp             HHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC---------CHHHHHHHH-HTTCCCCC-----CSS--------CC
T ss_pred             HHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCC---------CHHHHHHHH-HcCCCCCC-----Ccc--------CC
Confidence            99999899999999999999999999 99998542         112222222 22211111     111        22


Q ss_pred             HHHHHHHHHhccCCCCCCCCCCC
Q 044022          219 HASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       219 ~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ..+.+++.+||+.||++|||++|
T Consensus       320 ~~l~~li~~~l~~dP~~Rps~~e  342 (382)
T 3tt0_A          320 NELYMMMRDCWHAVPSQRPTFKQ  342 (382)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             HHHHHHHHHHcCCChhhCcCHHH
Confidence            57899999999999999999853

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=100.00  E-value=1e-41  Score=281.06  Aligned_cols=216  Identities=20%  Similarity=0.329  Sum_probs=167.3

Q ss_pred             CcccccccccccHHHHHHHHHHHHhc-CCCcccceeeeeeeCC-cceEEEEecCCCCHHHhhcCCC--------------
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQM-SHNHILKRIGCCLQTP-IPILVFQSVEYGTLRDCIFGAP--------------   64 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~-~~~lv~e~~~~~sL~~~l~~~~--------------   64 (241)
                      ||++.........+.+.+|+++++++ +||||+++++++...+ ..++||||+++|+|.+++....              
T Consensus        57 vK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~  136 (359)
T 3vhe_A           57 VKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFR  136 (359)
T ss_dssp             EEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC-------
T ss_pred             EEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeeeeeeeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhh
Confidence            35555444444567899999999999 7899999999998755 4899999999999999986532              


Q ss_pred             -----------------------------------------------------c---hHHHHHHHHHHHhchhhcCCCCC
Q 044022           65 -----------------------------------------------------L---PRLKIASDIVNSLAYLHFGFPRP   88 (241)
Q Consensus        65 -----------------------------------------------------~---~~~~~~~~i~~~l~~lh~~~~~~   88 (241)
                                                                           .   ....++.+++.||.|||   +.+
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH---~~~  213 (359)
T 3vhe_A          137 QGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRK  213 (359)
T ss_dssp             -----------------------------------------------CTTTTCBCHHHHHHHHHHHHHHHHHHH---HTT
T ss_pred             cccccccccchhhhccccccCccccccccccccccccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHH---HCC
Confidence                                                                 1   25678999999999999   899


Q ss_pred             ceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh-cC
Q 044022           89 IVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA-GR  167 (241)
Q Consensus        89 ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~-g~  167 (241)
                      ++||||||+|||++.++.++|+|||++................+|+.|+|||++.+..++.++||||||+++|+|++ |.
T Consensus       214 ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~  293 (359)
T 3vhe_A          214 CIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGA  293 (359)
T ss_dssp             CCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTTCEEC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSC
T ss_pred             cccCCCChhhEEEcCCCcEEEEeccceeeecccccchhccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCC
Confidence            99999999999999999999999999987655444344445668889999999998899999999999999999998 99


Q ss_pred             cccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          168 IHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       168 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      .||.....         .+........+.....+     ..        .++.+.+++.+||+.||++|||++|
T Consensus       294 ~p~~~~~~---------~~~~~~~~~~~~~~~~~-----~~--------~~~~l~~li~~~l~~dP~~Rps~~e  345 (359)
T 3vhe_A          294 SPYPGVKI---------DEEFCRRLKEGTRMRAP-----DY--------TTPEMYQTMLDCWHGEPSQRPTFSE  345 (359)
T ss_dssp             CSSTTCCC---------SHHHHHHHHHTCCCCCC-----TT--------CCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             CCCCccch---------hHHHHHHHHcCCCCCCC-----CC--------CCHHHHHHHHHHccCChhhCCCHHH
Confidence            99954211         11112222222111111     11        2257889999999999999999853

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.1e-41  Score=279.39  Aligned_cols=216  Identities=19%  Similarity=0.273  Sum_probs=167.0

Q ss_pred             CcccccccccccHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC---------------
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP---------------   64 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~---------------   64 (241)
                      ||++.........+.+.+|+.+++++ +||||+++++++...+..++||||+++|+|.+++....               
T Consensus        80 vK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~  159 (344)
T 1rjb_A           80 VKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKR  159 (344)
T ss_dssp             EEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTTTTCC------------
T ss_pred             EEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCCccEEEEecCCCCcHHHHHhhccccccccccchhhhcc
Confidence            35555444445667899999999999 99999999999999999999999999999999986542               


Q ss_pred             ------------chHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeeccccc
Q 044022           65 ------------LPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIG  132 (241)
Q Consensus        65 ------------~~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~  132 (241)
                                  ...+.++.+++.||.|||   +.+++||||||+||+++.++.++|+|||.+................+
T Consensus       160 ~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~  236 (344)
T 1rjb_A          160 LEEEEDLNVLTFEDLLCFAYQVAKGMEFLE---FKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARL  236 (344)
T ss_dssp             ---------CCHHHHHHHHHHHHHHHHHHH---HTTEEETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEE
T ss_pred             cccccccccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCChhhEEEcCCCcEEeCCCccCcccccCccceeccCccC
Confidence                        135679999999999999   89999999999999999999999999999976654443333445567


Q ss_pred             CCCccCcccccccCCCcchhhHHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCc
Q 044022          133 TRGYSAPEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPC  211 (241)
Q Consensus       133 ~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (241)
                      |+.|+|||.+.+..++.++||||||+++|+|++ |..||......         .........+....     ....   
T Consensus       237 t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~---------~~~~~~~~~~~~~~-----~~~~---  299 (344)
T 1rjb_A          237 PVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVD---------ANFYKLIQNGFKMD-----QPFY---  299 (344)
T ss_dssp             CGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCS---------HHHHHHHHTTCCCC-----CCTT---
T ss_pred             ccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccCCcH---------HHHHHHHhcCCCCC-----CCCC---
Confidence            888999999998899999999999999999998 99999652211         11111111111111     1111   


Q ss_pred             hhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          212 IEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       212 ~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                           .++.+.+++.+||+.||++|||++|
T Consensus       300 -----~~~~l~~li~~~l~~dp~~Rps~~~  324 (344)
T 1rjb_A          300 -----ATEEIYIIMQSCWAFDSRKRPSFPN  324 (344)
T ss_dssp             -----CCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             -----CCHHHHHHHHHHcCCCchhCcCHHH
Confidence                 2257899999999999999999753

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=100.00  E-value=1.1e-41  Score=279.09  Aligned_cols=215  Identities=23%  Similarity=0.337  Sum_probs=167.4

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----------------
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----------------   64 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----------------   64 (241)
                      ||++..+......+.+.+|++++++++||||+++++++...+..++||||+++++|.+++....                
T Consensus        82 vK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~  161 (343)
T 1luf_A           82 VKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRA  161 (343)
T ss_dssp             EEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTCC---------------
T ss_pred             EEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccCCceEEEEecCCCCcHHHHHHHhCcccccccccccccccc
Confidence            3555554444556789999999999999999999999999999999999999999999986521                


Q ss_pred             ---------c---hHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeeccccc
Q 044022           65 ---------L---PRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIG  132 (241)
Q Consensus        65 ---------~---~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~  132 (241)
                               .   .++.++.+++.||.|||   +++++||||||+||+++.++.+||+|||.+................+
T Consensus       162 ~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~  238 (343)
T 1luf_A          162 RVSSPGPPPLSCAEQLCIARQVAAGMAYLS---ERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAI  238 (343)
T ss_dssp             -------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCB
T ss_pred             cccccCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCcceEEECCCCeEEEeecCCCcccccCccccccCCCcc
Confidence                     1   35779999999999999   89999999999999999999999999999876543322222234467


Q ss_pred             CCCccCcccccccCCCcchhhHHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCc
Q 044022          133 TRGYSAPEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPC  211 (241)
Q Consensus       133 ~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (241)
                      ++.|+|||.+.+..++.++||||||+++|+|++ |..||....         ..+..... ..+.....     ...   
T Consensus       239 t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~---------~~~~~~~~-~~~~~~~~-----~~~---  300 (343)
T 1luf_A          239 PIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMA---------HEEVIYYV-RDGNILAC-----PEN---  300 (343)
T ss_dssp             CGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSC---------HHHHHHHH-HTTCCCCC-----CTT---
T ss_pred             cceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCCCC---------hHHHHHHH-hCCCcCCC-----CCC---
Confidence            889999999998899999999999999999999 999996521         11222222 12211111     111   


Q ss_pred             hhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          212 IEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       212 ~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                           .+..+.+++.+||+.||++|||+.|
T Consensus       301 -----~~~~l~~li~~~l~~~p~~Rps~~~  325 (343)
T 1luf_A          301 -----CPLELYNLMRLCWSKLPADRPSFCS  325 (343)
T ss_dssp             -----CCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             -----CCHHHHHHHHHHcccCcccCCCHHH
Confidence                 2257899999999999999999753

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=100.00  E-value=1.3e-40  Score=270.90  Aligned_cols=214  Identities=17%  Similarity=0.268  Sum_probs=168.5

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc---hHHHHHHHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL---PRLKIASDIVNS   77 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~i~~~   77 (241)
                      ||++.... ....+.+.+|+.++++++||||+++++++...+..++||||+++++|.+++.....   ....++.+++.|
T Consensus        75 vK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~l~~~~~~~i~~qi~~~  153 (321)
T 2c30_A           75 VKMMDLRK-QQRRELLFNEVVIMRDYQHFNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQVRLNEEQIATVCEAVLQA  153 (321)
T ss_dssp             EEEEETTT-CCSHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             EEEEeccc-hhHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEecCCCCCHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            35554322 34567799999999999999999999999999999999999999999999876543   467899999999


Q ss_pred             hchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHH
Q 044022           78 LAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFG  157 (241)
Q Consensus        78 l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G  157 (241)
                      |.|||   +.+++||||||+||+++.++.+||+|||++.........  .....||+.|+|||++.+..++.++||||||
T Consensus       154 L~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG  228 (321)
T 2c30_A          154 LAYLH---AQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPK--RKSLVGTPYWMAPEVISRSLYATEVDIWSLG  228 (321)
T ss_dssp             HHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCC--BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHH
T ss_pred             HHHHH---HCCeecCCCCHHHEEECCCCcEEEeeeeeeeecccCccc--cccccCCccccCHhhhcCCCCCchhhHHHHH
Confidence            99999   899999999999999999999999999998876543221  2345789999999999988999999999999


Q ss_pred             HHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCC
Q 044022          158 AFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRP  237 (241)
Q Consensus       158 ~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rp  237 (241)
                      +++|+|++|+.||....         ..+....... ........   ..        ..+..+.+++.+||+.||++||
T Consensus       229 ~il~el~~g~~pf~~~~---------~~~~~~~~~~-~~~~~~~~---~~--------~~~~~l~~li~~~l~~dp~~Rp  287 (321)
T 2c30_A          229 IMVIEMVDGEPPYFSDS---------PVQAMKRLRD-SPPPKLKN---SH--------KVSPVLRDFLERMLVRDPQERA  287 (321)
T ss_dssp             HHHHHHHHSSCTTTTSC---------HHHHHHHHHH-SSCCCCTT---GG--------GSCHHHHHHHHHHSCSSTTTSC
T ss_pred             HHHHHHHhCCCCCCCCC---------HHHHHHHHhc-CCCCCcCc---cc--------cCCHHHHHHHHHHccCChhhCc
Confidence            99999999999996421         1111222111 11111100   01        2235788999999999999999


Q ss_pred             CCCC
Q 044022          238 TMVD  241 (241)
Q Consensus       238 t~~e  241 (241)
                      |++|
T Consensus       288 s~~e  291 (321)
T 2c30_A          288 TAQE  291 (321)
T ss_dssp             CHHH
T ss_pred             CHHH
Confidence            9853

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=100.00  E-value=8.3e-41  Score=282.65  Aligned_cols=206  Identities=19%  Similarity=0.270  Sum_probs=163.4

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ...+.+.+|++++++++||||+++++++...+..++||||+++|+|.+.+.....    ....++.||+.||.|||   +
T Consensus        52 ~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv~E~~~gg~L~~~i~~~~~~~e~~~~~i~~qil~aL~~lH---~  128 (444)
T 3soa_A           52 RDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLIFDLVTGGELFEDIVAREYYSEADASHCIQQILEAVLHCH---Q  128 (444)
T ss_dssp             HHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEEECCCBCCBHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHH---H
T ss_pred             HHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEEEEeCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            3456789999999999999999999999999999999999999999998865432    46789999999999999   8


Q ss_pred             CCceeccCCCCCeeec---CCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHH
Q 044022           87 RPIVLRNFKTQNILFN---EENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL  163 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~---~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~  163 (241)
                      .+|+||||||+|||++   .++.+||+|||++.........  .....||+.|+|||++.+..++.++||||+|+++|+|
T Consensus       129 ~givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~~~~~~--~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyel  206 (444)
T 3soa_A          129 MGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQA--WFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYIL  206 (444)
T ss_dssp             TTCBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCCTTCCB--CCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHH
T ss_pred             CCccccCCCHHHEEEeccCCCCcEEEccCceeEEecCCCce--eecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHH
Confidence            9999999999999998   4678999999999766543321  1335789999999999988999999999999999999


Q ss_pred             HhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          164 LAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       164 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ++|..||...         ...+....... +.. ..+.+.+ .        ..++.+.+|+.+||+.||++|||+.|
T Consensus       207 l~G~~Pf~~~---------~~~~~~~~i~~-~~~-~~~~~~~-~--------~~s~~~~~li~~~L~~dP~~Rpta~e  264 (444)
T 3soa_A          207 LVGYPPFWDE---------DQHRLYQQIKA-GAY-DFPSPEW-D--------TVTPEAKDLINKMLTINPSKRITAAE  264 (444)
T ss_dssp             HHSSCSCCCS---------SHHHHHHHHHH-TCC-CCCTTTT-T--------TSCHHHHHHHHHHSCSSTTTSCCHHH
T ss_pred             HhCCCCCCCc---------cHHHHHHHHHh-CCC-CCCcccc-c--------cCCHHHHHHHHHHcCCChhHCCCHHH
Confidence            9999999552         11222222221 111 1111111 1        12357889999999999999999853

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=100.00  E-value=1.2e-41  Score=281.79  Aligned_cols=215  Identities=20%  Similarity=0.267  Sum_probs=165.8

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC--------c---hHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP--------L---PRLK   69 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~--------~---~~~~   69 (241)
                      ||++..........++.+|+.++++++||||+++++++...+..++||||+++|+|.+++....        .   ..+.
T Consensus       106 vK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~  185 (367)
T 3l9p_A          106 VKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLH  185 (367)
T ss_dssp             EEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHH
T ss_pred             EEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHH
Confidence            3555544445566789999999999999999999999999999999999999999999986431        1   4678


Q ss_pred             HHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCC---CeEEeeccCceecCCCCcceeecccccCCCccCcccccccC
Q 044022           70 IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEEN---VAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICV  146 (241)
Q Consensus        70 ~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~---~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~  146 (241)
                      ++.+++.||.|||   +++|+||||||+|||++.++   .+||+|||++................+|+.|+|||++.+..
T Consensus       186 i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~  262 (367)
T 3l9p_A          186 VARDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGI  262 (367)
T ss_dssp             HHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCC
T ss_pred             HHHHHHHHHHHHH---hCCeeCCCCChhhEEEecCCCCceEEECCCccccccccccccccCCCcCCcccEECHHHhcCCC
Confidence            9999999999999   89999999999999999554   59999999987542222112223346788999999999889


Q ss_pred             CCcchhhHHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHH
Q 044022          147 LNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLT  225 (241)
Q Consensus       147 ~~~~~Di~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  225 (241)
                      ++.++||||||+++|+|++ |..||...         ...+.......... ...     ..        ..+..+.+++
T Consensus       263 ~~~~~DvwslG~il~ellt~g~~pf~~~---------~~~~~~~~i~~~~~-~~~-----~~--------~~~~~l~~li  319 (367)
T 3l9p_A          263 FTSKTDTWSFGVLLWEIFSLGYMPYPSK---------SNQEVLEFVTSGGR-MDP-----PK--------NCPGPVYRIM  319 (367)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTSCCSSTTC---------CHHHHHHHHHTTCC-CCC-----CT--------TCCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHhCCCCCCCCC---------CHHHHHHHHHcCCC-CCC-----Cc--------cCCHHHHHHH
Confidence            9999999999999999998 99999542         11222222222211 111     11        1225688999


Q ss_pred             HHhccCCCCCCCCCCC
Q 044022          226 LECVNNSPEDRPTMVD  241 (241)
Q Consensus       226 ~~cl~~~p~~Rpt~~e  241 (241)
                      .+||+.||++|||++|
T Consensus       320 ~~~l~~dP~~Rps~~e  335 (367)
T 3l9p_A          320 TQCWQHQPEDRPNFAI  335 (367)
T ss_dssp             HHHTCSSGGGSCCHHH
T ss_pred             HHHcCCCHhHCcCHHH
Confidence            9999999999999753

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=100.00  E-value=1.9e-40  Score=276.41  Aligned_cols=209  Identities=21%  Similarity=0.243  Sum_probs=160.6

Q ss_pred             ccHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCC
Q 044022           11 HTYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ...+.+.+|..++.++ +||||+++++++...+..++||||+++|+|..++....    .....++.+|+.||.|||   
T Consensus        94 ~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH---  170 (396)
T 4dc2_A           94 EDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLH---  170 (396)
T ss_dssp             --CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEEEEEcCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            3456688999999987 89999999999999999999999999999999886532    246788999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~  165 (241)
                      +++|+||||||+|||++.++.+||+|||+++.......  ......||+.|+|||++.+..++.++|+||||+++|+|++
T Consensus       171 ~~givHrDLKp~NILl~~~g~ikL~DFGla~~~~~~~~--~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~  248 (396)
T 4dc2_A          171 ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGD--TTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMA  248 (396)
T ss_dssp             HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTC--CBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHH
T ss_pred             HCCEEeccCCHHHEEECCCCCEEEeecceeeecccCCC--ccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHh
Confidence            89999999999999999999999999999975332221  2244679999999999999999999999999999999999


Q ss_pred             cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCC
Q 044022          166 GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM  239 (241)
Q Consensus       166 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~  239 (241)
                      |+.||............ ..+........... ..     ...        .+..+.+|+.+||+.||++||++
T Consensus       249 G~~Pf~~~~~~~~~~~~-~~~~~~~~i~~~~~-~~-----p~~--------~s~~~~~li~~lL~~dP~~R~~~  307 (396)
T 4dc2_A          249 GRSPFDIVGSSDNPDQN-TEDYLFQVILEKQI-RI-----PRS--------LSVKAASVLKSFLNKDPKERLGC  307 (396)
T ss_dssp             SSCSSTTTTC------C-CHHHHHHHHHHCCC-CC-----CTT--------SCHHHHHHHHHHTCSCTTTSTTC
T ss_pred             CCCCCcccccccccchh-hHHHHHHHHhcccc-CC-----CCc--------CCHHHHHHHHHHhcCCHhHcCCC
Confidence            99999642221111111 11112121111111 11     111        22578899999999999999997

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=100.00  E-value=1.9e-40  Score=269.51  Aligned_cols=230  Identities=16%  Similarity=0.192  Sum_probs=171.4

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCC--cceEEEEecCCCCHHHhhcCCC-------chHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTP--IPILVFQSVEYGTLRDCIFGAP-------LPRLKIA   71 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~e~~~~~sL~~~l~~~~-------~~~~~~~   71 (241)
                      ||++.........+.+.+|++++++++||||+++++++....  ..++||||+++++|.+++....       .....++
T Consensus        39 vK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~  118 (319)
T 4euu_A           39 IKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVL  118 (319)
T ss_dssp             EEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEEECCTTCBHHHHHHSGGGTTCCCHHHHHHHH
T ss_pred             EEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEEEeCCCCCCHHHHHHHhccccCCCHHHHHHHH
Confidence            466665555566788899999999999999999999998655  7799999999999999987642       1467899


Q ss_pred             HHHHHHhchhhcCCCCCceeccCCCCCeee----cCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccc----
Q 044022           72 SDIVNSLAYLHFGFPRPIVLRNFKTQNILF----NEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYIS----  143 (241)
Q Consensus        72 ~~i~~~l~~lh~~~~~~ivh~dl~~~nil~----~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~----  143 (241)
                      .|++.||.|||   +.+++||||||+||++    +..+.+||+|||.+.........   ....|++.|+|||++.    
T Consensus       119 ~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~~~~~~~~---~~~~gt~~y~aPE~~~~~~~  192 (319)
T 4euu_A          119 RDVVGGMNHLR---ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQF---VSLYGTEEYLHPDMYERAVL  192 (319)
T ss_dssp             HHHHHHHHHHH---HTTEECSCCSGGGEEEEECTTSCEEEEECCCTTCEECCTTCCB---CCCCSCGGGCCHHHHHHHTS
T ss_pred             HHHHHHHHHHH---HCCEecCCCCHHHEEEeccCCCCceEEEccCCCceecCCCCce---eecccCCCccCHHHhhhccc
Confidence            99999999999   8999999999999999    77888999999999876554322   2346899999999986    


Q ss_pred             ----ccCCCcchhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccC------CCCCCc--cccCCC-
Q 044022          144 ----ICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFT------GIPAPI--IVQDIP-  210 (241)
Q Consensus       144 ----~~~~~~~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~--~~~~~~-  210 (241)
                          +..++.++||||||+++|+|++|+.||......     ....+.+..........      ......  +....+ 
T Consensus       193 ~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~-----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  267 (319)
T 4euu_A          193 RKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGP-----RRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPV  267 (319)
T ss_dssp             CCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCG-----GGCHHHHHHHHHHCCTTCCEEEECSTTCCEEEESSCCT
T ss_pred             cccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcc-----chhHHHHHHHhcCCCcccchhhhcccCCccccCccCCc
Confidence                467889999999999999999999999642211     11222222222211100      000000  000111 


Q ss_pred             -chhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          211 -CIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       211 -~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                       .......+..+.+++.+||+.||++|||++|
T Consensus       268 ~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~e  299 (319)
T 4euu_A          268 SCSLSRGLQVLLTPVLANILEADQEKCWGFDQ  299 (319)
T ss_dssp             TCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHH
T ss_pred             ccccchhHHHHhHHHHHHhccCChhhhccHHH
Confidence             1122466778999999999999999999864

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=100.00  E-value=9.1e-41  Score=275.97  Aligned_cols=205  Identities=22%  Similarity=0.345  Sum_probs=162.4

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ...+.+.+|++++++++||||+++++++...+..++||||+++|+|.+++.....    ....++.||+.||.|||   +
T Consensus        70 ~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH---~  146 (362)
T 2bdw_A           70 RDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCH---S  146 (362)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHH---H
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            3457789999999999999999999999999999999999999999998866532    46789999999999999   8


Q ss_pred             CCceeccCCCCCeeecCCC---CeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHH
Q 044022           87 RPIVLRNFKTQNILFNEEN---VAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL  163 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~---~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~  163 (241)
                      .+++||||||+|||++.++   .+||+|||++........   .....||+.|+|||++.+..++.++||||||+++|+|
T Consensus       147 ~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l  223 (362)
T 2bdw_A          147 NGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEA---WHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYIL  223 (362)
T ss_dssp             TTCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCTTCCS---CCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHH
T ss_pred             CCeEeccCchHHEEEecCCCCCCEEEeecCcceEecCCcc---cccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHH
Confidence            9999999999999998654   599999999976654322   1235789999999999988999999999999999999


Q ss_pred             HhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          164 LAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       164 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ++|..||....         ..+...... .+.. ..+.+.+         ...+..+.+|+.+||+.||++|||++|
T Consensus       224 l~g~~Pf~~~~---------~~~~~~~i~-~~~~-~~~~~~~---------~~~~~~~~~li~~~L~~dP~~R~t~~e  281 (362)
T 2bdw_A          224 LVGYPPFWDED---------QHRLYAQIK-AGAY-DYPSPEW---------DTVTPEAKSLIDSMLTVNPKKRITADQ  281 (362)
T ss_dssp             HHSSCSSCCSS---------HHHHHHHHH-HTCC-CCCTTGG---------GGSCHHHHHHHHHHSCSSGGGSCCHHH
T ss_pred             HHCCCCCCCCC---------HHHHHHHHH-hCCC-CCCcccc---------cCCCHHHHHHHHHHcCCChhhCcCHHH
Confidence            99999996521         112222211 1111 1111111         122357889999999999999999753

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=100.00  E-value=6.4e-41  Score=277.92  Aligned_cols=214  Identities=22%  Similarity=0.324  Sum_probs=156.2

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc-----hHHHHHHHHHH
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL-----PRLKIASDIVN   76 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-----~~~~~~~~i~~   76 (241)
                      |.+.........++|.+|++++++++||||+++++++...+..++||||+++|+|.+++.....     .++.++.+++.
T Consensus        79 K~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~~i~~qi~~  158 (373)
T 2qol_A           79 KTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIAS  158 (373)
T ss_dssp             EECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHH
T ss_pred             EEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEEEEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence            4444433444567899999999999999999999999999999999999999999999976432     46789999999


Q ss_pred             HhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcc-eeecccccCCCccCcccccccCCCcchhhHH
Q 044022           77 SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH-ITTDRVIGTRGYSAPEYISICVLNEKSNVFS  155 (241)
Q Consensus        77 ~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~-~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s  155 (241)
                      ||.|||   +.+++||||||+|||++.++.+||+|||++......... .......++..|+|||++.+..++.++||||
T Consensus       159 aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~S  235 (373)
T 2qol_A          159 GMKYLS---DMGYVHRDLAARNILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWS  235 (373)
T ss_dssp             HHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCC----------------------CTTSCHHHHHHCCCCHHHHHHH
T ss_pred             HHHHHH---HCCeeCCCCCcceEEEcCCCCEEECcCccccccccCCccceeccCCCcCCCccChhhhccCCcCchhcHHH
Confidence            999999   899999999999999999999999999999765443211 1111223567899999999889999999999


Q ss_pred             HHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCC
Q 044022          156 FGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPE  234 (241)
Q Consensus       156 ~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~  234 (241)
                      ||+++|++++ |+.||....         ..+.......... ....     .        ..+..+.+++.+||+.||+
T Consensus       236 lG~il~ellt~g~~P~~~~~---------~~~~~~~i~~~~~-~~~~-----~--------~~~~~l~~li~~cl~~dp~  292 (373)
T 2qol_A          236 YGIVLWEVMSYGERPYWEMS---------NQDVIKAVDEGYR-LPPP-----M--------DCPAALYQLMLDCWQKDRN  292 (373)
T ss_dssp             HHHHHHHHHTTC-CTTTTCC---------HHHHHHHHHTTEE-CCCC-----T--------TCBHHHHHHHHHHTCSSGG
T ss_pred             HHHHHHHHHhCCCCCCCCCC---------HHHHHHHHHcCCC-CCCC-----c--------cccHHHHHHHHHHhCcChh
Confidence            9999999998 999996521         1222222221111 1100     1        1225789999999999999


Q ss_pred             CCCCCCC
Q 044022          235 DRPTMVD  241 (241)
Q Consensus       235 ~Rpt~~e  241 (241)
                      +|||++|
T Consensus       293 ~RPs~~~  299 (373)
T 2qol_A          293 NRPKFEQ  299 (373)
T ss_dssp             GSCCHHH
T ss_pred             hCcCHHH
Confidence            9999753

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=100.00  E-value=1.9e-40  Score=271.38  Aligned_cols=199  Identities=17%  Similarity=0.238  Sum_probs=160.5

Q ss_pred             cccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCC
Q 044022           10 RHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        10 ~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ......+.+|++++++++||||+++++++...+..++||||+++|+|.+++....    .....++.+|+.||.|||   
T Consensus        46 ~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH---  122 (337)
T 1o6l_A           46 KDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLH---  122 (337)
T ss_dssp             TTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHH---
T ss_pred             hhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            3456788999999999999999999999999999999999999999999886532    246778999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~  165 (241)
                      +++|+||||||+|||++.++.+||+|||++........  ......||+.|+|||++.+..++.++|+||||+++|+|++
T Consensus       123 ~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~  200 (337)
T 1o6l_A          123 SRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGA--TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMC  200 (337)
T ss_dssp             HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTC--CBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHH
T ss_pred             HCCeecCcCCHHHEEECCCCCEEEeeccchhhcccCCC--cccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhc
Confidence            89999999999999999999999999999875432221  1234578999999999998899999999999999999999


Q ss_pred             cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCC
Q 044022          166 GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRP  237 (241)
Q Consensus       166 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rp  237 (241)
                      |..||....         ..+......... .      .+...        .+..+.+++.+||+.||++||
T Consensus       201 g~~Pf~~~~---------~~~~~~~i~~~~-~------~~p~~--------~s~~~~~li~~lL~~dP~~R~  248 (337)
T 1o6l_A          201 GRLPFYNQD---------HERLFELILMEE-I------RFPRT--------LSPEAKSLLAGLLKKDPKQRL  248 (337)
T ss_dssp             SSCSSCCSS---------HHHHHHHHHHCC-C------CCCTT--------SCHHHHHHHHHHTCSSTTTST
T ss_pred             CCCCCCCCC---------HHHHHHHHHcCC-C------CCCCC--------CCHHHHHHHHHHhhcCHHHhc
Confidence            999996521         112222221111 0      11111        225788999999999999999

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.3e-40  Score=271.45  Aligned_cols=204  Identities=20%  Similarity=0.263  Sum_probs=163.0

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ..+.+.+|+.++++++||||+++++++...+..++||||+++++|.+++.....    ....++.+++.||.|||   +.
T Consensus        57 ~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH---~~  133 (326)
T 2y0a_A           57 SREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLH---SL  133 (326)
T ss_dssp             CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHTTSSCCBHHHHHHHHHHHHHHHHHHH---HT
T ss_pred             hHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEEEcCCCCCHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHH---HC
Confidence            467899999999999999999999999999999999999999999999876432    56789999999999999   89


Q ss_pred             CceeccCCCCCeeecCCC----CeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHH
Q 044022           88 PIVLRNFKTQNILFNEEN----VAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL  163 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~----~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~  163 (241)
                      +++||||||+||+++.++    .+||+|||++........   .....||+.|+|||++.+..++.++||||||+++|+|
T Consensus       134 ~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l  210 (326)
T 2y0a_A          134 QIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNE---FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYIL  210 (326)
T ss_dssp             TEECCCCCGGGEEESCSSSSSCCEEECCCTTCEECCTTSC---CCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHH
T ss_pred             CeEcCCCCHHHEEEecCCCCCCCEEEEECCCCeECCCCCc---cccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHH
Confidence            999999999999998887    899999999987654322   1334689999999999988999999999999999999


Q ss_pred             HhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          164 LAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       164 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ++|..||....         ..+......... . . ......        ...+..+.+++.+||+.||++|||++|
T Consensus       211 l~g~~pf~~~~---------~~~~~~~~~~~~-~-~-~~~~~~--------~~~~~~~~~li~~~L~~dP~~Rpt~~e  268 (326)
T 2y0a_A          211 LSGASPFLGDT---------KQETLANVSAVN-Y-E-FEDEYF--------SNTSALAKDFIRRLLVKDPKKRMTIQD  268 (326)
T ss_dssp             HHSCCSSCCSS---------HHHHHHHHHHTC-C-C-CCHHHH--------TTSCHHHHHHHHHHSCSSGGGSCCHHH
T ss_pred             HHCcCCCCCCC---------HHHHHHHHHhcC-C-C-cCcccc--------ccCCHHHHHHHHHHccCChhhCCCHHH
Confidence            99999995421         112222211111 0 0 000000        122357889999999999999999753

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=100.00  E-value=4.2e-41  Score=274.43  Aligned_cols=213  Identities=19%  Similarity=0.235  Sum_probs=160.3

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHH
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVN   76 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~   76 (241)
                      |.+.........++|.+|++++++++||||+++++++..+. .++|++++.+|+|.+++....     ...+.++.+++.
T Consensus        50 K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~  128 (327)
T 3poz_A           50 KELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAK  128 (327)
T ss_dssp             EEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-EEEEEECCTTCBHHHHHHHSTTSCCHHHHHHHHHHHHH
T ss_pred             eecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-eEEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence            33433344456788999999999999999999999998765 788999999999999986532     146789999999


Q ss_pred             HhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHH
Q 044022           77 SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSF  156 (241)
Q Consensus        77 ~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~  156 (241)
                      ||.|||   +.+++||||||+|||++.++.+||+|||++................+|..|+|||++.+..++.++|||||
T Consensus       129 ~l~~LH---~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~sl  205 (327)
T 3poz_A          129 GMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSY  205 (327)
T ss_dssp             HHHHHH---HTTCCCSCCCGGGEEEEETTEEEECCTTHHHHHTTTCC-------CCCGGGSCHHHHHHCCCCHHHHHHHH
T ss_pred             HHHHHh---hCCeeCCCCChheEEECCCCCEEEccCcceeEccCCcccccccCCCccccccChHHhccCCCCchhhhhhh
Confidence            999999   89999999999999999999999999999987655443333334456788999999999999999999999


Q ss_pred             HHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCC
Q 044022          157 GAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPED  235 (241)
Q Consensus       157 G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~  235 (241)
                      |+++|+|++ |+.||......         +..... ..+.....     ..        ..+..+.+++.+||+.||++
T Consensus       206 G~il~ellt~g~~p~~~~~~~---------~~~~~~-~~~~~~~~-----~~--------~~~~~~~~li~~~l~~~p~~  262 (327)
T 3poz_A          206 GVTVWELMTFGSKPYDGIPAS---------EISSIL-EKGERLPQ-----PP--------ICTIDVYMIMVKCWMIDADS  262 (327)
T ss_dssp             HHHHHHHHTTSCCTTTTCCGG---------GHHHHH-HTTCCCCC-----CT--------TBCHHHHHHHHHHTCSCGGG
T ss_pred             HHHHHHHHhcCCCCccCCCHH---------HHHHHH-HcCCCCCC-----Cc--------cCCHHHHHHHHHHcCCChhh
Confidence            999999999 99999652211         111111 11111111     11        12257889999999999999


Q ss_pred             CCCCCC
Q 044022          236 RPTMVD  241 (241)
Q Consensus       236 Rpt~~e  241 (241)
                      |||+.|
T Consensus       263 Rps~~e  268 (327)
T 3poz_A          263 RPKFRE  268 (327)
T ss_dssp             SCCHHH
T ss_pred             CCCHHH
Confidence            999753

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=100.00  E-value=3.6e-41  Score=272.78  Aligned_cols=216  Identities=20%  Similarity=0.323  Sum_probs=169.2

Q ss_pred             CcccccccccccHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC---------------
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP---------------   64 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~---------------   64 (241)
                      ||++.........+.+.+|+++++++ +||||+++++++...+..++||||+++|+|.+++....               
T Consensus        58 vK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~  137 (313)
T 1t46_A           58 VKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMED  137 (313)
T ss_dssp             EEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHTTTTC------------
T ss_pred             HHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCCCcEEEEecCCCCCHHHHHHhccccccccccccccccc
Confidence            35554444444567899999999999 99999999999999999999999999999999986432               


Q ss_pred             ----c---hHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCcc
Q 044022           65 ----L---PRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYS  137 (241)
Q Consensus        65 ----~---~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~  137 (241)
                          .   ..+.++.+++.||.|||   +.+++|+||||+||+++.++.++|+|||.+................+++.|+
T Consensus       138 ~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~  214 (313)
T 1t46_A          138 DELALDLEDLLSFSYQVAKGMAFLA---SKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWM  214 (313)
T ss_dssp             --CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGC
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCccceEEEcCCCCEEEccccccccccccccceeccCCCCcceee
Confidence                1   46789999999999999   8999999999999999999999999999998766554433334455778899


Q ss_pred             CcccccccCCCcchhhHHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHH
Q 044022          138 APEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQ  216 (241)
Q Consensus       138 aPE~~~~~~~~~~~Di~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (241)
                      |||.+.+..++.++||||||+++|+|++ |..||......         ..............     ...        .
T Consensus       215 aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~---------~~~~~~~~~~~~~~-----~~~--------~  272 (313)
T 1t46_A          215 APESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVD---------SKFYKMIKEGFRML-----SPE--------H  272 (313)
T ss_dssp             CHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSS---------HHHHHHHHHTCCCC-----CCT--------T
T ss_pred             ChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccch---------hHHHHHhccCCCCC-----Ccc--------c
Confidence            9999998899999999999999999999 99998652211         11111111111110     011        1


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          217 QLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       217 ~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      .+..+.+++.+||+.||++|||++|
T Consensus       273 ~~~~l~~li~~~l~~dp~~Rps~~e  297 (313)
T 1t46_A          273 APAEMYDIMKTCWDADPLKRPTFKQ  297 (313)
T ss_dssp             SCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             CCHHHHHHHHHHcCCCchhCcCHHH
Confidence            2257899999999999999999853

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=5.7e-41  Score=272.98  Aligned_cols=204  Identities=15%  Similarity=0.206  Sum_probs=163.2

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC--c---hHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP--L---PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~--~---~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ....+.+|++++++++||||+++++++...+..++||||+++++|.+++....  .   ....++.|++.||.|||   +
T Consensus        44 ~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH---~  120 (321)
T 1tki_A           44 DQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLH---S  120 (321)
T ss_dssp             HHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECCCCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHH---H
T ss_pred             cHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEeCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            35568899999999999999999999999999999999999999999997642  1   46789999999999999   8


Q ss_pred             CCceeccCCCCCeeecC--CCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHH
Q 044022           87 RPIVLRNFKTQNILFNE--ENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~--~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~  164 (241)
                      .+++||||||+|||++.  ++.+||+|||.+.........   ....+++.|+|||++.+..++.++||||||+++|+|+
T Consensus       121 ~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll  197 (321)
T 1tki_A          121 HNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNF---RLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLL  197 (321)
T ss_dssp             TTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCEE---EEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCCCcc---ccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHH
Confidence            99999999999999987  789999999999876544322   2346899999999999888899999999999999999


Q ss_pred             hcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          165 AGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       165 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +|..||....         ..+......... ..  .....        ....+..+.+++.+||..||++|||++|
T Consensus       198 ~g~~pf~~~~---------~~~~~~~i~~~~-~~--~~~~~--------~~~~s~~~~~li~~~L~~dp~~Rpt~~e  254 (321)
T 1tki_A          198 SGINPFLAET---------NQQIIENIMNAE-YT--FDEEA--------FKEISIEAMDFVDRLLVKERKSRMTASE  254 (321)
T ss_dssp             HSSCTTCCSS---------HHHHHHHHHHTC-CC--CCHHH--------HTTSCHHHHHHHHTTSCSSGGGSCCHHH
T ss_pred             hCCCCCcCCC---------HHHHHHHHHcCC-CC--CChhh--------hccCCHHHHHHHHHHcCCChhHCcCHHH
Confidence            9999996521         112222222111 10  00000        0122367899999999999999999853

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=100.00  E-value=5e-40  Score=269.86  Aligned_cols=209  Identities=21%  Similarity=0.235  Sum_probs=161.2

Q ss_pred             ccHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCC
Q 044022           11 HTYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ...+.+.+|+.+++++ +||||+++++++...+..++||||+++|+|.+++....    .....++.+|+.||.|||   
T Consensus        51 ~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH---  127 (345)
T 3a8x_A           51 EDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLH---  127 (345)
T ss_dssp             HHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            3456688999999998 89999999999999999999999999999999886532    246788999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~  165 (241)
                      +++|+||||||+|||++.++.+||+|||++........  ......||+.|+|||++.+..++.++|+||||+++|+|++
T Consensus       128 ~~~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~  205 (345)
T 3a8x_A          128 ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGD--TTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMA  205 (345)
T ss_dssp             HTTCBCCCCCGGGEEECTTSCEEECCGGGCBCSCCTTC--CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHH
T ss_pred             HCCceecCCCHHHEEECCCCCEEEEeccccccccCCCC--cccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHh
Confidence            89999999999999999999999999999975432221  1234578999999999998899999999999999999999


Q ss_pred             cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCC
Q 044022          166 GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM  239 (241)
Q Consensus       166 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~  239 (241)
                      |+.||.............. ............ .     +...        .+..+.+++.+||+.||++|||+
T Consensus       206 g~~pf~~~~~~~~~~~~~~-~~~~~~i~~~~~-~-----~p~~--------~s~~~~~li~~lL~~dP~~R~~~  264 (345)
T 3a8x_A          206 GRSPFDIVGSSDNPDQNTE-DYLFQVILEKQI-R-----IPRS--------LSVKAASVLKSFLNKDPKERLGC  264 (345)
T ss_dssp             SSCTTTTTTC-------CH-HHHHHHHHHCCC-C-----CCTT--------SCHHHHHHHHHHTCSSTTTSTTC
T ss_pred             CCCCcCCcccccccccccH-HHHHHHHHcCCC-C-----CCCC--------CCHHHHHHHHHHhcCCHhHCCCC
Confidence            9999965222111111111 111111111111 1     1111        22578899999999999999997

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=100.00  E-value=3.9e-41  Score=273.72  Aligned_cols=215  Identities=18%  Similarity=0.263  Sum_probs=167.1

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC--------------Cch
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA--------------PLP   66 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~--------------~~~   66 (241)
                      ||.+..........++.+|++++++++||||+++++++...+..++||||+++++|.+++...              ...
T Consensus        60 iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~  139 (322)
T 1p4o_A           60 IKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSK  139 (322)
T ss_dssp             EEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHH
T ss_pred             EEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEEccCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHH
Confidence            355544444445667999999999999999999999999999999999999999999998642              124


Q ss_pred             HHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccC
Q 044022           67 RLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICV  146 (241)
Q Consensus        67 ~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~  146 (241)
                      .+.++.+++.||.|||   +++++||||||+||+++.++.++|+|||.+................+++.|+|||.+.+..
T Consensus       140 ~~~i~~qi~~~l~~lH---~~~i~H~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  216 (322)
T 1p4o_A          140 MIQMAGEIADGMAYLN---ANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGV  216 (322)
T ss_dssp             HHHHHHHHHHHHHHHH---HTTCBCSCCSGGGEEECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHH---HCCCccCCCccceEEEcCCCeEEECcCccccccccccccccccCCCCCCCccChhhhccCC
Confidence            6788999999999999   8999999999999999999999999999987654333222233445678899999999888


Q ss_pred             CCcchhhHHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHH
Q 044022          147 LNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLT  225 (241)
Q Consensus       147 ~~~~~Di~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  225 (241)
                      ++.++||||||+++|+|++ |..||....         ..+..... ..+.....     ..        ..+..+.+++
T Consensus       217 ~~~~~Di~slG~il~el~~~g~~p~~~~~---------~~~~~~~~-~~~~~~~~-----~~--------~~~~~l~~li  273 (322)
T 1p4o_A          217 FTTYSDVWSFGVVLWEIATLAEQPYQGLS---------NEQVLRFV-MEGGLLDK-----PD--------NCPDMLFELM  273 (322)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTSCCTTTTSC---------HHHHHHHH-HTTCCCCC-----CT--------TCCHHHHHHH
T ss_pred             CCchhhHHHHHHHHHHHHhcCCCccccCC---------HHHHHHHH-HcCCcCCC-----CC--------CCCHHHHHHH
Confidence            9999999999999999999 889985421         11222221 11211111     11        1225788999


Q ss_pred             HHhccCCCCCCCCCCC
Q 044022          226 LECVNNSPEDRPTMVD  241 (241)
Q Consensus       226 ~~cl~~~p~~Rpt~~e  241 (241)
                      .+||+.||++|||+.|
T Consensus       274 ~~~l~~dp~~Rps~~e  289 (322)
T 1p4o_A          274 RMCWQYNPKMRPSFLE  289 (322)
T ss_dssp             HHHTCSSGGGSCCHHH
T ss_pred             HHHcCCCcccCcCHHH
Confidence            9999999999999853

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=100.00  E-value=1.6e-41  Score=277.30  Aligned_cols=215  Identities=20%  Similarity=0.320  Sum_probs=166.8

Q ss_pred             cccccccccccHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC-----------------
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA-----------------   63 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~-----------------   63 (241)
                      |.+.........+.+.+|+++++++ +||||+++++++...+..++||||+++|+|.+++...                 
T Consensus        82 K~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~  161 (333)
T 2i1m_A           82 KMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTA  161 (333)
T ss_dssp             EEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCC
T ss_pred             HhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecCCceEEEEecCCCCcHHHHHHHhccccccccccccccccc
Confidence            4444333334567799999999999 8999999999999999999999999999999998642                 


Q ss_pred             -CchHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccc
Q 044022           64 -PLPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYI  142 (241)
Q Consensus        64 -~~~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~  142 (241)
                       ....+.++.+++.||.|||   +.+++||||||+||+++.++.++|+|||++................+++.|+|||.+
T Consensus       162 ~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  238 (333)
T 2i1m_A          162 STRDLLHFSSQVAQGMAFLA---SKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESI  238 (333)
T ss_dssp             CHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGCEEEGGGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHh---cCCcccCCcccceEEECCCCeEEECccccccccccccceeecCCCCCCccccCHHHh
Confidence             1146789999999999999   899999999999999999999999999999765444333333445577889999999


Q ss_pred             cccCCCcchhhHHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHH
Q 044022          143 SICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHAS  221 (241)
Q Consensus       143 ~~~~~~~~~Di~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (241)
                      .+..++.++||||||+++|+|++ |..||......         ...............     ...        .+..+
T Consensus       239 ~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~---------~~~~~~~~~~~~~~~-----~~~--------~~~~l  296 (333)
T 2i1m_A          239 FDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVN---------SKFYKLVKDGYQMAQ-----PAF--------APKNI  296 (333)
T ss_dssp             HHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSS---------HHHHHHHHHTCCCCC-----CTT--------CCHHH
T ss_pred             ccCCCChHHHHHHHHHHHHHHHcCCCCCCcccchh---------HHHHHHHhcCCCCCC-----CCC--------CCHHH
Confidence            98899999999999999999998 99998652111         111122222211111     111        12578


Q ss_pred             HHHHHHhccCCCCCCCCCCC
Q 044022          222 AQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       222 ~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      .+++.+||+.||++|||++|
T Consensus       297 ~~li~~~l~~~p~~Rps~~~  316 (333)
T 2i1m_A          297 YSIMQACWALEPTHRPTFQQ  316 (333)
T ss_dssp             HHHHHHHTCSSGGGSCCHHH
T ss_pred             HHHHHHHhccChhhCcCHHH
Confidence            89999999999999999853

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=100.00  E-value=7.2e-40  Score=266.05  Aligned_cols=196  Identities=20%  Similarity=0.288  Sum_probs=160.3

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ...+.+.+|+.+++.++||||+++++++...+..++||||+++|+|.+++.....    ....++.+++.||.|||   +
T Consensus        48 ~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH---~  124 (318)
T 1fot_A           48 KQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLH---S  124 (318)
T ss_dssp             TCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHH---T
T ss_pred             hHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEEEeCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            3567788999999999999999999999999999999999999999999865422    46778999999999999   9


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhc
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      ++++||||||+|||++.++.+||+|||++.......     ....||+.|+|||++.+..++.++|+||||+++|+|++|
T Consensus       125 ~~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g  199 (318)
T 1fot_A          125 KDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVT-----YTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAG  199 (318)
T ss_dssp             TTEECCCCCGGGEEECTTSCEEECCCSSCEECSSCB-----CCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHS
T ss_pred             CCccccCCChheEEEcCCCCEEEeecCcceecCCcc-----ccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhC
Confidence            999999999999999999999999999998754322     335789999999999988999999999999999999999


Q ss_pred             CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCC
Q 044022          167 RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT  238 (241)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt  238 (241)
                      ..||....         ..+......... . .     ....        .+..+.+++.+||..||++||+
T Consensus       200 ~~pf~~~~---------~~~~~~~i~~~~-~-~-----~p~~--------~~~~~~~li~~lL~~dp~~R~~  247 (318)
T 1fot_A          200 YTPFYDSN---------TMKTYEKILNAE-L-R-----FPPF--------FNEDVKDLLSRLITRDLSQRLG  247 (318)
T ss_dssp             SCTTCCSS---------HHHHHHHHHHCC-C-C-----CCTT--------SCHHHHHHHHHHTCSCTTTCTT
T ss_pred             CCCCCCCC---------HHHHHHHHHhCC-C-C-----CCCC--------CCHHHHHHHHHHhccCHHHcCC
Confidence            99996521         112222221111 0 1     1111        2257889999999999999993

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=100.00  E-value=7.3e-41  Score=272.76  Aligned_cols=213  Identities=20%  Similarity=0.270  Sum_probs=163.0

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHH
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVN   76 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~   76 (241)
                      |.+...........+.+|+.++++++||||+++++++. .+..++|+||+.+|+|.+++....     .....++.+++.
T Consensus        48 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~  126 (325)
T 3kex_A           48 KVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSSLQLVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAK  126 (325)
T ss_dssp             EEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSSEEEEEECCTTCBSHHHHHSSGGGSCTTHHHHHHHHHHH
T ss_pred             EeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCccEEEEEeCCCCCHHHHHHHccccCCHHHHHHHHHHHHH
Confidence            34434444455677889999999999999999999986 456889999999999999986642     257889999999


Q ss_pred             HhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHH
Q 044022           77 SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSF  156 (241)
Q Consensus        77 ~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~  156 (241)
                      ||.|||   +.+++||||||+|||++.++.+||+|||++................++..|+|||++.+..++.++|||||
T Consensus       127 ~l~~lH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~sl  203 (325)
T 3kex_A          127 GMYYLE---EHGMVHRNLAARNVLLKSPSQVQVADFGVADLLPPDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSY  203 (325)
T ss_dssp             HHHHHH---HTTCCCSCCSSTTEEESSSSCEEECSCSGGGGSCCCTTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHH
T ss_pred             HHHHHH---hCCCCCCccchheEEECCCCeEEECCCCcccccCcccccccccCCCCcccccChHHhccCCCChhhHhHHh
Confidence            999999   89999999999999999999999999999987655443333344567889999999998899999999999


Q ss_pred             HHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCC
Q 044022          157 GAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPED  235 (241)
Q Consensus       157 G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~  235 (241)
                      |+++|++++ |..||.....         .+..... ........+.     .        .+..+.+++.+||+.||++
T Consensus       204 G~~l~el~~~g~~p~~~~~~---------~~~~~~~-~~~~~~~~~~-----~--------~~~~~~~li~~~l~~dp~~  260 (325)
T 3kex_A          204 GVTVWELMTFGAEPYAGLRL---------AEVPDLL-EKGERLAQPQ-----I--------CTIDVYMVMVKCWMIDENI  260 (325)
T ss_dssp             HHHHHHHHTTSCCTTTTSCT---------THHHHHH-HTTCBCCCCT-----T--------BCTTTTHHHHHHTCSCTTT
T ss_pred             HHHHHHHHhCCCCCccccCH---------HHHHHHH-HcCCCCCCCC-----c--------CcHHHHHHHHHHcCCChhh
Confidence            999999999 9999965211         1111111 1111111111     1        1135778999999999999


Q ss_pred             CCCCCC
Q 044022          236 RPTMVD  241 (241)
Q Consensus       236 Rpt~~e  241 (241)
                      |||+.|
T Consensus       261 Rps~~e  266 (325)
T 3kex_A          261 RPTFKE  266 (325)
T ss_dssp             SCCHHH
T ss_pred             CcCHHH
Confidence            999753

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=100.00  E-value=1.2e-40  Score=282.61  Aligned_cols=199  Identities=23%  Similarity=0.315  Sum_probs=158.3

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCC-cceEEEEecCCCCHHHhhcCCC------chHHHHHHHHHHHhchhhcC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTP-IPILVFQSVEYGTLRDCIFGAP------LPRLKIASDIVNSLAYLHFG   84 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~-~~~lv~e~~~~~sL~~~l~~~~------~~~~~~~~~i~~~l~~lh~~   84 (241)
                      ..+.|.+|++++++++||||+++++++...+ ..++||||+++|+|.+++....      ...+.++.|++.||.|||  
T Consensus       229 ~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH--  306 (450)
T 1k9a_A          229 TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE--  306 (450)
T ss_dssp             TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEEECCTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH--
Confidence            4678999999999999999999999987765 7899999999999999986532      146789999999999999  


Q ss_pred             CCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHH
Q 044022           85 FPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        85 ~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~  164 (241)
                       +++++||||||+|||++.++.+||+|||++.......     ....++..|+|||++.+..++.++||||||+++|+|+
T Consensus       307 -~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~  380 (450)
T 1k9a_A          307 -GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ-----DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIY  380 (450)
T ss_dssp             -HTTEECSCCCGGGEEECTTSCEEECCCTTCEECC-----------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHH
T ss_pred             -hCCeeCCCCCHhhEEECCCCCEEEeeCCCcccccccc-----cCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHH
Confidence             8999999999999999999999999999998544321     2235678899999999999999999999999999999


Q ss_pred             h-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          165 A-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       165 ~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      + |..||......         +..... ..+.....     ..        .++..+.++|.+||+.||++|||+.|
T Consensus       381 t~g~~P~~~~~~~---------~~~~~i-~~~~~~~~-----p~--------~~~~~l~~li~~cl~~dp~~Rpt~~~  435 (450)
T 1k9a_A          381 SFGRVPYPRIPLK---------DVVPRV-EKGYKMDA-----PD--------GCPPAVYDVMKNCWHLDAATRPTFLQ  435 (450)
T ss_dssp             TTTCCSSTTSCTT---------THHHHH-HTTCCCCC-----CT--------TCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             hCCCCCCCCCCHH---------HHHHHH-HcCCCCCC-----CC--------cCCHHHHHHHHHHcCCChhHCcCHHH
Confidence            8 99999653211         111111 11211111     11        22367899999999999999999753

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=100.00  E-value=9.4e-41  Score=272.20  Aligned_cols=213  Identities=23%  Similarity=0.313  Sum_probs=164.1

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCC--------------------------------------
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTP--------------------------------------   42 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--------------------------------------   42 (241)
                      ||++.........+.+.+|++++++++||||++++++|...+                                      
T Consensus        36 vK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (332)
T 3qd2_B           36 IKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRM  115 (332)
T ss_dssp             EEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHHHHC----------------------------
T ss_pred             EEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhhhhhhhhccccccccccCCCcccccccceeec
Confidence            455554444456778999999999999999999999986543                                      


Q ss_pred             -------------------cceEEEEecCCCCHHHhhcCCCc-------hHHHHHHHHHHHhchhhcCCCCCceeccCCC
Q 044022           43 -------------------IPILVFQSVEYGTLRDCIFGAPL-------PRLKIASDIVNSLAYLHFGFPRPIVLRNFKT   96 (241)
Q Consensus        43 -------------------~~~lv~e~~~~~sL~~~l~~~~~-------~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~   96 (241)
                                         ..++||||+++++|.+++.....       ....++.|++.||.|||   +.+++||||||
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp  192 (332)
T 3qd2_B          116 DPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHGVCLHIFIQIAEAVEFLH---SKGLMHRDLKP  192 (332)
T ss_dssp             ----------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCG
T ss_pred             cccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhhHHHHHHHHHHHHHHHHHH---hCCeeecCCCc
Confidence                               27999999999999999976532       25789999999999999   89999999999


Q ss_pred             CCeeecCCCCeEEeeccCceecCCCCcc----------eeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhc
Q 044022           97 QNILFNEENVAKWFDFLLSISIPEGETH----------ITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        97 ~nil~~~~~~~~l~df~~~~~~~~~~~~----------~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      +||+++.++.+||+|||.+.........          .......||+.|+|||.+.+..++.++||||||+++|+|++|
T Consensus       193 ~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~  272 (332)
T 3qd2_B          193 SNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYS  272 (332)
T ss_dssp             GGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CGGGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSC
T ss_pred             ccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCcCccChHHhcCCCCcchhhHHHHHHHHHHHHHc
Confidence            9999999999999999999876543211          112334689999999999988999999999999999999999


Q ss_pred             CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          167 RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ..|+...           ....... ...     ..        .......++.+.+++.+||+.||++|||++|
T Consensus       273 ~~~~~~~-----------~~~~~~~-~~~-----~~--------~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~  322 (332)
T 3qd2_B          273 FSTQMER-----------VRIITDV-RNL-----KF--------PLLFTQKYPQEHMMVQDMLSPSPTERPEATD  322 (332)
T ss_dssp             CCCHHHH-----------HHHHHHH-HTT-----CC--------CHHHHHHCHHHHHHHHHHHCSSGGGSCCHHH
T ss_pred             CCChhHH-----------HHHHHHh-hcc-----CC--------CcccccCChhHHHHHHHHccCCCCcCCCHHH
Confidence            8776331           0111111 011     00        0112244467789999999999999999853

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=100.00  E-value=1.3e-39  Score=270.42  Aligned_cols=203  Identities=19%  Similarity=0.235  Sum_probs=162.4

Q ss_pred             cccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCC
Q 044022           10 RHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        10 ~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ....+.+.+|++++++++|||||+++++|...+..++||||+.+|+|.+++.....    ....++.+++.||.|||   
T Consensus        56 ~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH---  132 (384)
T 4fr4_A           56 RNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMVVDLLLGGDLRYHLQQNVHFKEETVKLFICELVMALDYLQ---  132 (384)
T ss_dssp             TTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            34567889999999999999999999999999999999999999999999876532    46788999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc---cCCCcchhhHHHHHHHHH
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI---CVLNEKSNVFSFGAFLFE  162 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~---~~~~~~~Di~s~G~~~~~  162 (241)
                      +.+|+||||||+|||++.++.++|+|||++........   .....||+.|+|||++..   ..++.++||||||+++|+
T Consensus       133 ~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~---~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~e  209 (384)
T 4fr4_A          133 NQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRETQ---ITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYE  209 (384)
T ss_dssp             HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTCC---BCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHH
T ss_pred             HCCceeccCcHHHeEECCCCCEEEeccceeeeccCCCc---eeccCCCccccCCeeeccCCCCCCCccceeechHHHHHH
Confidence            89999999999999999999999999999987654322   234579999999999974   358899999999999999


Q ss_pred             HHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCC
Q 044022          163 LLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM  239 (241)
Q Consensus       163 ~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~  239 (241)
                      |++|+.||......      ...+.........  ...     ..        ..+..+.+|+.+||+.||++||++
T Consensus       210 lltG~~Pf~~~~~~------~~~~~~~~~~~~~--~~~-----p~--------~~s~~~~~li~~lL~~dP~~R~s~  265 (384)
T 4fr4_A          210 LLRGRRPYHIRSST------SSKEIVHTFETTV--VTY-----PS--------AWSQEMVSLLKKLLEPNPDQRFSQ  265 (384)
T ss_dssp             HHHSSCSSCCCTTS------CHHHHHHHHHHCC--CCC-----CT--------TSCHHHHHHHHHHSCSSGGGSCCS
T ss_pred             HHhCCCCCCCCCCc------cHHHHHHHHhhcc--cCC-----CC--------cCCHHHHHHHHHHhcCCHhHhccc
Confidence            99999999642111      1122222211111  011     11        122578999999999999999983

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=100.00  E-value=3.6e-40  Score=265.41  Aligned_cols=202  Identities=20%  Similarity=0.293  Sum_probs=158.2

Q ss_pred             HHHHHHHHHHHHhcCCCcccceeeeeee--CCcceEEEEecCCCCHHHhhcCCCc---hHHHHHHHHHHHhchhhcCCCC
Q 044022           13 YGSCINNITYAAQMSHNHILKRIGCCLQ--TPIPILVFQSVEYGTLRDCIFGAPL---PRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~--~~~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      .+.+.+|++++++++||||+++++++..  .+..++||||+++++|.+++.....   ....++.|++.||.|||   +.
T Consensus        80 ~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~  156 (298)
T 2zv2_A           80 IEQVYQEIAILKKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLKPLSEDQARFYFQDLIKGIEYLH---YQ  156 (298)
T ss_dssp             -CHHHHHHHHHHTCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCSSCCCHHHHHHHHHHHHHHHHHHH---HT
T ss_pred             HHHHHHHHHHHHhCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH---HC
Confidence            4678999999999999999999999986  5678999999999999987765433   46789999999999999   89


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccC---CCcchhhHHHHHHHHHHH
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICV---LNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~---~~~~~Di~s~G~~~~~~~  164 (241)
                      +++||||||+||+++.++.+||+|||++.........  .....||+.|+|||.+.+..   .+.++||||||+++|+|+
T Consensus       157 ~ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~  234 (298)
T 2zv2_A          157 KIIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSDAL--LSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFV  234 (298)
T ss_dssp             TEECCCCCGGGEEECTTSCEEECCCTTCEECSSSSCE--ECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHH
T ss_pred             CeeccCCCHHHEEECCCCCEEEecCCCcccccccccc--ccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHH
Confidence            9999999999999999999999999999876543322  23457899999999997654   367899999999999999


Q ss_pred             hcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          165 AGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       165 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +|+.||...         .......... .... ..+.   ...        .++.+.+++.+||+.||++|||++|
T Consensus       235 ~g~~pf~~~---------~~~~~~~~~~-~~~~-~~~~---~~~--------~~~~l~~li~~~l~~dp~~R~s~~e  289 (298)
T 2zv2_A          235 FGQCPFMDE---------RIMCLHSKIK-SQAL-EFPD---QPD--------IAEDLKDLITRMLDKNPESRIVVPE  289 (298)
T ss_dssp             HSSCSSCCS---------SHHHHHHHHH-HCCC-CCCS---SSC--------CCHHHHHHHHHHTCSCTTTSCCHHH
T ss_pred             HCCCCCCCc---------cHHHHHHHHh-cccC-CCCC---ccc--------cCHHHHHHHHHHhhcChhhCCCHHH
Confidence            999999541         1111111111 1111 1111   111        2257899999999999999999753

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=100.00  E-value=9.8e-41  Score=278.31  Aligned_cols=169  Identities=18%  Similarity=0.208  Sum_probs=140.0

Q ss_pred             Ccccccccc-cccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC---C---chHHHHHHH
Q 044022            1 MKFYGHEYH-RHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA---P---LPRLKIASD   73 (241)
Q Consensus         1 iK~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~---~---~~~~~~~~~   73 (241)
                      ||++..+.. ....+.+.+|++++++++|||||++++++...+..++||||+++|+|.+++...   .   .....++.|
T Consensus        57 vK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~q  136 (389)
T 3gni_B           57 VRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQG  136 (389)
T ss_dssp             EEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHH
T ss_pred             EEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEEEEEEccCCCCHHHHHhhhcccCCCHHHHHHHHHH
Confidence            355543332 234567888999999999999999999999999999999999999999998653   1   146789999


Q ss_pred             HHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCc-----ceeecccccCCCccCcccccc--cC
Q 044022           74 IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGET-----HITTDRVIGTRGYSAPEYISI--CV  146 (241)
Q Consensus        74 i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~-----~~~~~~~~~~~~~~aPE~~~~--~~  146 (241)
                      |+.||.|||   +.+|+||||||+|||++.++.+||+|||.+........     ........|++.|+|||++.+  ..
T Consensus       137 i~~~l~~LH---~~~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  213 (389)
T 3gni_B          137 VLKALDYIH---HMGYVHRSVKASHILISVDGKVYLSGLRSNLSMISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQG  213 (389)
T ss_dssp             HHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCGGGCEECEETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSC
T ss_pred             HHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEcccccceeeccccccccccccccccccccccccCHHHHhccCCC
Confidence            999999999   89999999999999999999999999998765432211     111123468889999999987  57


Q ss_pred             CCcchhhHHHHHHHHHHHhcCccccc
Q 044022          147 LNEKSNVFSFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       147 ~~~~~Di~s~G~~~~~~~~g~~p~~~  172 (241)
                      ++.++||||||+++|+|++|+.||..
T Consensus       214 ~~~~~DiwslG~il~el~~g~~pf~~  239 (389)
T 3gni_B          214 YDAKSDIYSVGITACELANGHVPFKD  239 (389)
T ss_dssp             BCTHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred             CCcHhHHHHHHHHHHHHHHCCCCCCC
Confidence            89999999999999999999999965

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=100.00  E-value=4.4e-40  Score=269.10  Aligned_cols=215  Identities=19%  Similarity=0.305  Sum_probs=169.4

Q ss_pred             CcccccccccccHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC---------------
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP---------------   64 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~---------------   64 (241)
                      ||++..+......+++.+|+++++++ +||||+++++++...+..++||||+++++|.+++....               
T Consensus        72 vK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~  151 (334)
T 2pvf_A           72 VKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPE  151 (334)
T ss_dssp             EEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC-------
T ss_pred             EeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccCCceEEEEECCCCCcHHHHHHHhcccccccccccccccc
Confidence            35555444445567899999999999 99999999999999999999999999999999987542               


Q ss_pred             --c---hHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCc
Q 044022           65 --L---PRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAP  139 (241)
Q Consensus        65 --~---~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aP  139 (241)
                        .   .++.++.+++.||.|||   +.+++|+||||+||+++.++.+||+|||.+................+++.|+||
T Consensus       152 ~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  228 (334)
T 2pvf_A          152 EQMTFKDLVSCTYQLARGMEYLA---SQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAP  228 (334)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCH
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCccceEEEcCCCCEEEccccccccccccccccccCCCCcccceeCh
Confidence              1   35788999999999999   899999999999999999999999999999876654433333344567889999


Q ss_pred             ccccccCCCcchhhHHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHH
Q 044022          140 EYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQL  218 (241)
Q Consensus       140 E~~~~~~~~~~~Di~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (241)
                      |++.+..++.++||||||+++|+|++ |..||...         ...+..... ..+.....     ..        ..+
T Consensus       229 E~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~---------~~~~~~~~~-~~~~~~~~-----~~--------~~~  285 (334)
T 2pvf_A          229 EALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGI---------PVEELFKLL-KEGHRMDK-----PA--------NCT  285 (334)
T ss_dssp             HHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTC---------CHHHHHHHH-HHTCCCCC-----CT--------TCC
T ss_pred             HHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcC---------CHHHHHHHH-hcCCCCCC-----Cc--------cCC
Confidence            99988889999999999999999999 99998542         112222222 11211111     11        122


Q ss_pred             HHHHHHHHHhccCCCCCCCCCCC
Q 044022          219 HASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       219 ~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ..+.+++.+||+.||++|||++|
T Consensus       286 ~~l~~li~~~l~~dp~~Rps~~e  308 (334)
T 2pvf_A          286 NELYMMMRDCWHAVPSQRPTFKQ  308 (334)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             HHHHHHHHHHccCChhhCcCHHH
Confidence            57889999999999999999753

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=100.00  E-value=6.3e-40  Score=260.94  Aligned_cols=217  Identities=22%  Similarity=0.250  Sum_probs=166.7

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVN   76 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~   76 (241)
                      ||++.........+.+.+|+.++++++||||+++++++...+..++|+||+++++|.+++.....    ....++.+++.
T Consensus        37 vK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~  116 (276)
T 2yex_A           37 VKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMA  116 (276)
T ss_dssp             EEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTEEGGGGSBTTTBCCHHHHHHHHHHHHH
T ss_pred             EEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEEEecCCCcHHHHHhhccCCCHHHHHHHHHHHHH
Confidence            35554433344567899999999999999999999999999999999999999999999876532    46789999999


Q ss_pred             HhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCC-CcchhhHH
Q 044022           77 SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVL-NEKSNVFS  155 (241)
Q Consensus        77 ~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~-~~~~Di~s  155 (241)
                      ||.|||   +.+++|+||+|+||+++.++.++|+|||.+................+++.|+|||.+.+..+ +.++||||
T Consensus       117 ~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~s  193 (276)
T 2yex_A          117 GVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWS  193 (276)
T ss_dssp             HHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHH
T ss_pred             HHHHHH---hCCeeccCCChHHEEEccCCCEEEeeCCCccccCCCcchhcccCCccccCccChHHHhcCCCCCCcchHHH
Confidence            999999   89999999999999999999999999999876543322222234568899999999987665 67899999


Q ss_pred             HHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCC
Q 044022          156 FGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPED  235 (241)
Q Consensus       156 ~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~  235 (241)
                      ||+++|+|++|..||.......       .. ..........   .. . ..        ..+..+.+++.+||+.||++
T Consensus       194 lG~il~~l~~g~~p~~~~~~~~-------~~-~~~~~~~~~~---~~-~-~~--------~~~~~~~~li~~~l~~~p~~  252 (276)
T 2yex_A          194 CGIVLTAMLAGELPWDQPSDSC-------QE-YSDWKEKKTY---LN-P-WK--------KIDSAPLALLHKILVENPSA  252 (276)
T ss_dssp             HHHHHHHHHHSSCCCSCSCTTS-------HH-HHHHHTTCTT---ST-T-GG--------GSCHHHHHHHHHHSCSSTTT
T ss_pred             HHHHHHHHHhCCCCCCCCchHH-------HH-HHHhhhcccc---cC-c-hh--------hcCHHHHHHHHHHCCCCchh
Confidence            9999999999999996522111       01 1111111100   00 0 01        22357889999999999999


Q ss_pred             CCCCCC
Q 044022          236 RPTMVD  241 (241)
Q Consensus       236 Rpt~~e  241 (241)
                      |||++|
T Consensus       253 Rps~~~  258 (276)
T 2yex_A          253 RITIPD  258 (276)
T ss_dssp             SCCHHH
T ss_pred             CCCHHH
Confidence            999753

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=100.00  E-value=3.1e-40  Score=271.80  Aligned_cols=200  Identities=19%  Similarity=0.243  Sum_probs=158.3

Q ss_pred             ccHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCC
Q 044022           11 HTYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~   85 (241)
                      .....+.+|.++++.+ +||||+++++++...+..++||||+++|+|.+++....    .....++.+|+.||.|||   
T Consensus        65 ~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH---  141 (353)
T 3txo_A           65 DDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLFFVMEFVNGGDLMFHIQKSRRFDEARARFYAAEIISALMFLH---  141 (353)
T ss_dssp             TTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---
T ss_pred             hHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            4566788999999998 79999999999999999999999999999999986532    246789999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~  165 (241)
                      +++|+||||||+|||++.++.+||+|||++........  ......||+.|+|||++.+..++.++||||||+++|+|++
T Consensus       142 ~~givHrDlkp~NILl~~~g~ikL~DFG~a~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~  219 (353)
T 3txo_A          142 DKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGICNGV--TTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLC  219 (353)
T ss_dssp             HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC-----------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHH
T ss_pred             HCCCcccCCCHHHEEECCCCCEEEccccceeecccCCc--cccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHh
Confidence            89999999999999999999999999999875332221  2234579999999999998899999999999999999999


Q ss_pred             cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCC
Q 044022          166 GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM  239 (241)
Q Consensus       166 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~  239 (241)
                      |+.||...         ...+..........    .   ....        .+..+.+++.+||+.||++||++
T Consensus       220 G~~Pf~~~---------~~~~~~~~i~~~~~----~---~p~~--------~~~~~~~li~~lL~~dP~~R~~~  269 (353)
T 3txo_A          220 GHAPFEAE---------NEDDLFEAILNDEV----V---YPTW--------LHEDATGILKSFMTKNPTMRLGS  269 (353)
T ss_dssp             SSCSSCCS---------SHHHHHHHHHHCCC----C---CCTT--------SCHHHHHHHHHHTCSSGGGSTTS
T ss_pred             CCCCCCCC---------CHHHHHHHHHcCCC----C---CCCC--------CCHHHHHHHHHHhhhCHHHccCC
Confidence            99999652         11222222222111    0   0111        22568899999999999999997

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=100.00  E-value=1e-40  Score=271.13  Aligned_cols=225  Identities=24%  Similarity=0.310  Sum_probs=169.0

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeC--CcceEEEEecCCCCHHHhhcCCCc---hHHHHHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQT--PIPILVFQSVEYGTLRDCIFGAPL---PRLKIASDIV   75 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~--~~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~i~   75 (241)
                      ||++..+......+.+.+|++++++++||||+++++++...  ...++||||+++++|.+++.....   ....++.+++
T Consensus        65 vK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~i~~~l~  144 (318)
T 3lxp_A           65 VKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQLVMEYVPLGSLRDYLPRHSIGLAQLLLFAQQIC  144 (318)
T ss_dssp             EEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEEEECCCTTCBHHHHGGGSCCCHHHHHHHHHHHH
T ss_pred             EEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEEEEecccCCcHHHHHhhCCCCHHHHHHHHHHHH
Confidence            45665554445577899999999999999999999999874  578999999999999999977643   5678999999


Q ss_pred             HHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcc-eeecccccCCCccCcccccccCCCcchhhH
Q 044022           76 NSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH-ITTDRVIGTRGYSAPEYISICVLNEKSNVF  154 (241)
Q Consensus        76 ~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~-~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~  154 (241)
                      .||.|||   +.+++|+||||+||+++.++.++|+|||.+......... .......++..|+|||++.+..++.++|||
T Consensus       145 ~~l~~LH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~  221 (318)
T 3lxp_A          145 EGMAYLH---AQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVW  221 (318)
T ss_dssp             HHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCGGGCEECCTTCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHH
T ss_pred             HHHHHHH---hCCccCCCCchheEEEcCCCCEEECCccccccccccccccccccCCCCCceeeChHHhcCCCCCcHHHHH
Confidence            9999999   899999999999999999999999999999876554322 122334577889999999988899999999


Q ss_pred             HHHHHHHHHHhcCcccccccccC-----CCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhc
Q 044022          155 SFGAFLFELLAGRIHIWDLLKDT-----HDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECV  229 (241)
Q Consensus       155 s~G~~~~~~~~g~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl  229 (241)
                      |||+++|+|++|..||.......     ......................     ...        ..+..+.+++.+||
T Consensus       222 slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--------~~~~~l~~li~~~l  288 (318)
T 3lxp_A          222 SFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTELLERGERLP-----RPD--------KCPAEVYHLMKNCW  288 (318)
T ss_dssp             HHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCCC-----CCT--------TCCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCCcccccchhhhhhhcccccchhHHHHHHHHhcccCCC-----CCc--------cccHHHHHHHHHHc
Confidence            99999999999999986521110     0000000001111111111111     111        22367899999999


Q ss_pred             cCCCCCCCCCCC
Q 044022          230 NNSPEDRPTMVD  241 (241)
Q Consensus       230 ~~~p~~Rpt~~e  241 (241)
                      +.||++|||++|
T Consensus       289 ~~dP~~Rps~~e  300 (318)
T 3lxp_A          289 ETEASFRPTFEN  300 (318)
T ss_dssp             CSSGGGSCCHHH
T ss_pred             CCCcccCcCHHH
Confidence            999999999853

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=100.00  E-value=8.4e-41  Score=266.97  Aligned_cols=212  Identities=20%  Similarity=0.268  Sum_probs=152.7

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC--c---hHHHHHHHHHH
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP--L---PRLKIASDIVN   76 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~--~---~~~~~~~~i~~   76 (241)
                      |...........+.+.+|+.++++++||||+++++++. .+..++||||+++++|.+++....  .   ....++.+++.
T Consensus        49 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~  127 (281)
T 1mp8_A           49 KTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLST  127 (281)
T ss_dssp             EECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCEEEEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHH
T ss_pred             EeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEc-cCccEEEEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence            33333333345677999999999999999999999984 567899999999999999986432  1   46788999999


Q ss_pred             HhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHH
Q 044022           77 SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSF  156 (241)
Q Consensus        77 ~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~  156 (241)
                      ||.|||   +.+++||||||+||+++.++.++|+|||.+......... ......+++.|+|||.+.+..++.++|||||
T Consensus       128 ~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~sl  203 (281)
T 1mp8_A          128 ALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYY-KASKGKLPIKWMAPESINFRRFTSASDVWMF  203 (281)
T ss_dssp             HHHHHH---HTTCCCSCCSGGGEEEEETTEEEECC--------------------CCGGGCCHHHHHHCCCSHHHHHHHH
T ss_pred             HHHHHH---hCCeecccccHHHEEECCCCCEEECccccccccCccccc-ccccCCCcccccChhhcccCCCCCccCchHH
Confidence            999999   899999999999999999999999999998765443221 1123346778999999998899999999999


Q ss_pred             HHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCC
Q 044022          157 GAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPED  235 (241)
Q Consensus       157 G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~  235 (241)
                      |+++|+|++ |..||......         +...... ......     ....        .+..+.+++.+||+.||++
T Consensus       204 G~~l~ell~~g~~pf~~~~~~---------~~~~~i~-~~~~~~-----~~~~--------~~~~l~~li~~~l~~~p~~  260 (281)
T 1mp8_A          204 GVCMWEILMHGVKPFQGVKNN---------DVIGRIE-NGERLP-----MPPN--------CPPTLYSLMTKCWAYDPSR  260 (281)
T ss_dssp             HHHHHHHHTTSCCTTTTCCGG---------GHHHHHH-TTCCCC-----CCTT--------CCHHHHHHHHHHTCSSGGG
T ss_pred             HHHHHHHHhcCCCCCCcCCHH---------HHHHHHH-cCCCCC-----CCCC--------CCHHHHHHHHHHccCChhh
Confidence            999999996 99999652211         1111111 111111     1111        2267889999999999999


Q ss_pred             CCCCCC
Q 044022          236 RPTMVD  241 (241)
Q Consensus       236 Rpt~~e  241 (241)
                      |||+.|
T Consensus       261 Rps~~~  266 (281)
T 1mp8_A          261 RPRFTE  266 (281)
T ss_dssp             SCCHHH
T ss_pred             CcCHHH
Confidence            999753

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=100.00  E-value=8.4e-40  Score=264.22  Aligned_cols=217  Identities=23%  Similarity=0.343  Sum_probs=166.5

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC----C---chHHHHHHHHHHHhchhhc
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA----P---LPRLKIASDIVNSLAYLHF   83 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~----~---~~~~~~~~~i~~~l~~lh~   83 (241)
                      ...+.+.+|++++++++||||+++++++...+..++||||+++++|.+++...    .   ..+..++.+++.||.||| 
T Consensus        72 ~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH-  150 (307)
T 2nru_A           72 ELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLH-  150 (307)
T ss_dssp             THHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHhcCCCCeEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHh-
Confidence            34677999999999999999999999999999999999999999999998632    1   146789999999999999 


Q ss_pred             CCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHH
Q 044022           84 GFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL  163 (241)
Q Consensus        84 ~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~  163 (241)
                        +.+++|+||||+||+++.++.++|+|||.+................|++.|+|||.+.+ .++.++||||||+++|+|
T Consensus       151 --~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l  227 (307)
T 2nru_A          151 --ENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEI  227 (307)
T ss_dssp             --HTTEECSCCCGGGEEECTTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHH
T ss_pred             --cCCeecCCCCHHHEEEcCCCcEEEeecccccccccccccccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHH
Confidence              89999999999999999999999999999987655433333344578999999998874 578999999999999999


Q ss_pred             HhcCcccccccccCCCcccchHHHHHHHhhh-cccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          164 LAGRIHIWDLLKDTHDHGCFFNEYLKNYLED-KRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       164 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ++|..||.......     ............ .......+..+..     .....+..+.+++.+||+.||++|||++|
T Consensus       228 ~~g~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~li~~cl~~~p~~Rps~~~  296 (307)
T 2nru_A          228 ITGLPAVDEHREPQ-----LLLDIKEEIEDEEKTIEDYIDKKMND-----ADSTSVEAMYSVASQCLHEKKNKRPDIKK  296 (307)
T ss_dssp             HHCCCSBCTTBSSS-----BTTHHHHHHHTTSCCHHHHSCSSCSC-----CCHHHHHHHHHHHHHHTCSSTTTSCCHHH
T ss_pred             HHCCCCcccCcchH-----HHHHHHHHhhhhhhhhhhhccccccc-----cchHHHHHHHHHHHHHcCCCcccCcCHHH
Confidence            99999996532211     111111111111 1111111111111     11356678999999999999999999753

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.3e-40  Score=272.12  Aligned_cols=197  Identities=23%  Similarity=0.317  Sum_probs=158.2

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ....+.+|+++++.++||||+++++++...+..++||||+ +|+|.+++....    .....++.|++.||.|||   +.
T Consensus        52 ~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~E~~-~g~l~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH---~~  127 (336)
T 3h4j_B           52 MHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMVIEYA-GGELFDYIVEKKRMTEDEGRRFFQQIICAIEYCH---RH  127 (336)
T ss_dssp             CSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCC-CEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHH---HH
T ss_pred             HHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEECC-CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HC
Confidence            4567899999999999999999999999999999999999 689988875432    256789999999999999   89


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCC-CcchhhHHHHHHHHHHHhc
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVL-NEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~-~~~~Di~s~G~~~~~~~~g  166 (241)
                      +++||||||+|||++.++.+||+|||++.........   ....||+.|+|||++.+..+ ++++||||||+++|+|++|
T Consensus       128 givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g  204 (336)
T 3h4j_B          128 KIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGNFL---KTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVG  204 (336)
T ss_dssp             TCCCCCCSTTTEEECTTCCEEECCSSCTBTTTTSBTT---CCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHS
T ss_pred             CeEecCCchhhEEEcCCCCEEEEEeccceeccCCccc---ccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhC
Confidence            9999999999999999999999999999765543321   33468999999999987765 6899999999999999999


Q ss_pred             CcccccccccCCCcccchHHHHHHHhhhcccCCCCC--CccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          167 RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPA--PIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +.||........                  ...+..  .....        ..+..+.+++.+||+.||.+|||++|
T Consensus       205 ~~Pf~~~~~~~~------------------~~~i~~~~~~~p~--------~~s~~~~~li~~~L~~dP~~Rpt~~e  255 (336)
T 3h4j_B          205 RLPFDDEFIPNL------------------FKKVNSCVYVMPD--------FLSPGAQSLIRRMIVADPMQRITIQE  255 (336)
T ss_dssp             SCSSBCSSSTTC------------------BCCCCSSCCCCCT--------TSCHHHHHHHHTTSCSSGGGSCCHHH
T ss_pred             CCCCCCccHHHH------------------HHHHHcCCCCCcc--------cCCHHHHHHHHHHcCCChhHCcCHHH
Confidence            999965211110                  000000  01111        12357889999999999999999853

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=100.00  E-value=6.6e-40  Score=269.85  Aligned_cols=204  Identities=18%  Similarity=0.263  Sum_probs=160.8

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC--------CchHHHHHHHHHHHhchhhc
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA--------PLPRLKIASDIVNSLAYLHF   83 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~--------~~~~~~~~~~i~~~l~~lh~   83 (241)
                      ..+.+.+|++++++++||||+++++++...+..++||||+++++|.+.+...        ......++.||+.||.||| 
T Consensus        69 ~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH-  147 (351)
T 3c0i_A           69 STEDLKREASICHMLKHPHIVELLETYSSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCH-  147 (351)
T ss_dssp             CHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH-
T ss_pred             hHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHH-
Confidence            4678999999999999999999999999999999999999999998877432        1246789999999999999 


Q ss_pred             CCCCCceeccCCCCCeeecCCCC---eEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHH
Q 044022           84 GFPRPIVLRNFKTQNILFNEENV---AKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFL  160 (241)
Q Consensus        84 ~~~~~ivh~dl~~~nil~~~~~~---~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~  160 (241)
                        +++++||||||+|||++.++.   +||+|||++.........  .....||+.|+|||++.+..++.++||||||+++
T Consensus       148 --~~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il  223 (351)
T 3c0i_A          148 --DNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESGLV--AGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVIL  223 (351)
T ss_dssp             --HTTEECSCCSGGGEEECSSSTTCCEEECCCTTCEECCTTSCB--CCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHH
T ss_pred             --HCCceeccCChHHeEEecCCCCCcEEEecCcceeEecCCCee--ecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHH
Confidence              899999999999999987654   999999999876553321  2345789999999999988899999999999999


Q ss_pred             HHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          161 FELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       161 ~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                      |+|++|..||....          .+....... +...  ..+..        ....+..+.+++.+||+.||++|||+.
T Consensus       224 ~~ll~g~~pf~~~~----------~~~~~~i~~-~~~~--~~~~~--------~~~~s~~~~~li~~~L~~dP~~R~s~~  282 (351)
T 3c0i_A          224 FILLSGCLPFYGTK----------ERLFEGIIK-GKYK--MNPRQ--------WSHISESAKDLVRRMLMLDPAERITVY  282 (351)
T ss_dssp             HHHHHSSCSSCSSH----------HHHHHHHHH-TCCC--CCHHH--------HTTSCHHHHHHHHHHTCSSTTTSCCHH
T ss_pred             HHHHHCCCCCCCcH----------HHHHHHHHc-CCCC--CCccc--------cccCCHHHHHHHHHHCCCChhHCcCHH
Confidence            99999999996511          111111111 1110  00000        012236789999999999999999975


Q ss_pred             C
Q 044022          241 D  241 (241)
Q Consensus       241 e  241 (241)
                      |
T Consensus       283 e  283 (351)
T 3c0i_A          283 E  283 (351)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=100.00  E-value=8.3e-40  Score=268.35  Aligned_cols=201  Identities=21%  Similarity=0.261  Sum_probs=162.0

Q ss_pred             ccHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCC
Q 044022           11 HTYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~   85 (241)
                      .....+.+|..++.++ +||||+++++++...+..++||||+++|+|.+++....    .....++.|++.||.|||   
T Consensus        59 ~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH---  135 (345)
T 1xjd_A           59 DDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLH---  135 (345)
T ss_dssp             TCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---
T ss_pred             hhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            4566788999999987 99999999999999999999999999999999986532    246788999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~  165 (241)
                      +++++||||||+|||++.++.+||+|||++........  ......||+.|+|||++.+..++.++|+||||+++|+|++
T Consensus       136 ~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~  213 (345)
T 1xjd_A          136 SKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDA--KTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLI  213 (345)
T ss_dssp             HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTC--CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHH
T ss_pred             HCCeEeCCCChhhEEECCCCCEEEeEChhhhhcccCCC--cccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhc
Confidence            89999999999999999999999999999975432221  1234578999999999999899999999999999999999


Q ss_pred             cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          166 GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       166 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                      |..||....         ..+.........       ......        .+..+.+++.+||..||++|||+.
T Consensus       214 g~~Pf~~~~---------~~~~~~~i~~~~-------~~~p~~--------~s~~~~~li~~lL~~dp~~R~~~~  264 (345)
T 1xjd_A          214 GQSPFHGQD---------EEELFHSIRMDN-------PFYPRW--------LEKEAKDLLVKLFVREPEKRLGVR  264 (345)
T ss_dssp             SSCSSCCSS---------HHHHHHHHHHCC-------CCCCTT--------SCHHHHHHHHHHSCSSGGGSBTTB
T ss_pred             CCCCCCCCC---------HHHHHHHHHhCC-------CCCCcc--------cCHHHHHHHHHHhcCCHhHcCCCh
Confidence            999996421         112222221111       011111        225788999999999999999985

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=100.00  E-value=2.6e-40  Score=269.07  Aligned_cols=213  Identities=18%  Similarity=0.314  Sum_probs=152.9

Q ss_pred             ccccccc-ccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcc------eEEEEecCCCCHHHhhcCC---------C-
Q 044022            2 KFYGHEY-HRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIP------ILVFQSVEYGTLRDCIFGA---------P-   64 (241)
Q Consensus         2 K~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~------~lv~e~~~~~sL~~~l~~~---------~-   64 (241)
                      |++..+. .....+++.+|++++++++||||+++++++......      ++|+||+++|+|.+++...         . 
T Consensus        57 K~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~  136 (323)
T 3qup_A           57 KMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPL  136 (323)
T ss_dssp             EEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC-------CEEEEEECCTTCBHHHHHHHHHC---CCCCCH
T ss_pred             EEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeeccccccCCCccEEEEEeccCCcHHHHHHhhhccccccccCH
Confidence            4444332 334567899999999999999999999999876654      9999999999999988432         1 


Q ss_pred             chHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc
Q 044022           65 LPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI  144 (241)
Q Consensus        65 ~~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~  144 (241)
                      ..+..++.|++.||.|||   +.+++||||||+||+++.++.+||+|||.+................+++.|+|||.+.+
T Consensus       137 ~~~~~i~~qi~~al~~LH---~~~ivH~Dikp~NIli~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  213 (323)
T 3qup_A          137 QTLVRFMVDIACGMEYLS---SRNFIHRDLAARNCMLAEDMTVCVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLAD  213 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTSCEEECCCCC-----------------CCGGGCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH---cCCcccCCCCcceEEEcCCCCEEEeeccccccccccccccccccccCcccccCchhhcC
Confidence            246789999999999999   89999999999999999999999999999976654433222233456778999999998


Q ss_pred             cCCCcchhhHHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHH
Q 044022          145 CVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQ  223 (241)
Q Consensus       145 ~~~~~~~Di~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (241)
                      ..++.++||||||+++|+|++ |..||......         +.......... ..     ...        ..+..+.+
T Consensus       214 ~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~---------~~~~~~~~~~~-~~-----~~~--------~~~~~l~~  270 (323)
T 3qup_A          214 NLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENA---------EIYNYLIGGNR-LK-----QPP--------ECMEEVYD  270 (323)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGG---------GHHHHHHTTCC-CC-----CCT--------TCCHHHHH
T ss_pred             CCCCCccchhhHHHHHHHHHhCCCCCccccChH---------HHHHHHhcCCC-CC-----CCC--------ccCHHHHH
Confidence            899999999999999999999 89999652211         11111111111 11     111        12257899


Q ss_pred             HHHHhccCCCCCCCCCC
Q 044022          224 LTLECVNNSPEDRPTMV  240 (241)
Q Consensus       224 l~~~cl~~~p~~Rpt~~  240 (241)
                      ++.+||+.||++|||+.
T Consensus       271 li~~~l~~dp~~Rps~~  287 (323)
T 3qup_A          271 LMYQCWSADPKQRPSFT  287 (323)
T ss_dssp             HHHHTTCSSGGGSCCHH
T ss_pred             HHHHHccCChhhCcCHH
Confidence            99999999999999964

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=3.8e-40  Score=261.55  Aligned_cols=203  Identities=23%  Similarity=0.359  Sum_probs=161.3

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc-----hHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL-----PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-----~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ..+++.+|++++++++||||+++++++...+..++||||+++++|.+++.....     ....++.+++.||.|||   +
T Consensus        48 ~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH---~  124 (269)
T 4hcu_A           48 SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLE---E  124 (269)
T ss_dssp             CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHH---H
T ss_pred             CHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEeCCCCcHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHH---h
Confidence            457799999999999999999999999999999999999999999999965421     46789999999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh-
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA-  165 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~-  165 (241)
                      .+++|+||||+||+++.++.++|+|||.+........ .......+++.|+|||.+.+..++.++||||||+++|+|++ 
T Consensus       125 ~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~  203 (269)
T 4hcu_A          125 ACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQY-TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSE  203 (269)
T ss_dssp             TTCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHHH-HSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTT
T ss_pred             CCeecCCcchheEEEcCCCCEEecccccccccccccc-ccccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcC
Confidence            9999999999999999999999999999876543221 11123346678999999998899999999999999999999 


Q ss_pred             cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          166 GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       166 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      |..||....         ..+..........   ...   ..        ..+..+.+++.+||+.||++|||+.|
T Consensus       204 g~~p~~~~~---------~~~~~~~~~~~~~---~~~---~~--------~~~~~~~~li~~~l~~~p~~Rps~~~  256 (269)
T 4hcu_A          204 GKIPYENRS---------NSEVVEDISTGFR---LYK---PR--------LASTHVYQIMNHCWRERPEDRPAFSR  256 (269)
T ss_dssp             SCCTTTTCC---------HHHHHHHHHTTCC---CCC---CT--------TSCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             CCCCCCCCC---------HHHHHHHHhcCcc---CCC---CC--------cCCHHHHHHHHHHccCCcccCcCHHH
Confidence            999995421         1222222221111   011   11        12257889999999999999999753

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=100.00  E-value=6.5e-40  Score=259.97  Aligned_cols=203  Identities=19%  Similarity=0.288  Sum_probs=161.7

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ..+++.+|++++++++||||+++++++...+..++||||+++++|.+++....     ..+..++.+++.||.|||   +
T Consensus        46 ~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH---~  122 (268)
T 3sxs_A           46 SEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYISNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLE---S  122 (268)
T ss_dssp             CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHH---H
T ss_pred             cHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEccCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            45779999999999999999999999999999999999999999999986532     256789999999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh-
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA-  165 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~-  165 (241)
                      .+++|+||||+||+++.++.++|+|||.+.......... .....+++.|+|||.+.+..++.++||||||+++|+|++ 
T Consensus       123 ~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~  201 (268)
T 3sxs_A          123 HQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYVS-SVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSL  201 (268)
T ss_dssp             TTEEESSCSGGGEEECTTCCEEECCTTCEEECCTTCEEE-CCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTT
T ss_pred             CCeecCCcCcceEEECCCCCEEEccCccceecchhhhhc-ccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcC
Confidence            999999999999999999999999999998765543222 223345677999999998889999999999999999999 


Q ss_pred             cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          166 GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       166 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      |..||....         ..+...... .+..  ...+   .        ..+..+.+++.+||+.||++|||++|
T Consensus       202 g~~p~~~~~---------~~~~~~~~~-~~~~--~~~~---~--------~~~~~l~~li~~~l~~~p~~Rps~~~  254 (268)
T 3sxs_A          202 GKMPYDLYT---------NSEVVLKVS-QGHR--LYRP---H--------LASDTIYQIMYSCWHELPEKRPTFQQ  254 (268)
T ss_dssp             TCCTTTTSC---------HHHHHHHHH-TTCC--CCCC---T--------TSCHHHHHHHHHTTCSSGGGSCCHHH
T ss_pred             CCCCccccC---------hHHHHHHHH-cCCC--CCCC---C--------cChHHHHHHHHHHcCCChhhCcCHHH
Confidence            999985421         111111111 1111  1111   1        11256889999999999999999853

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=100.00  E-value=9.3e-40  Score=266.27  Aligned_cols=213  Identities=20%  Similarity=0.241  Sum_probs=146.5

Q ss_pred             ccHHHHHHHHHHHHhcC-CCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCC
Q 044022           11 HTYGSCINNITYAAQMS-HNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~-h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~   85 (241)
                      .....+.+|+.+++.+. ||||+++++++...+..++||||+++|+|.+++.....    ....++.+++.||.|||   
T Consensus        47 ~~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH---  123 (325)
T 3kn6_A           47 RMEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGELFERIKKKKHFSETEASYIMRKLVSAVSHMH---  123 (325)
T ss_dssp             GGHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHH---
T ss_pred             hhhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            34567889999999997 99999999999999999999999999999999876532    56789999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCC---CeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHH
Q 044022           86 PRPIVLRNFKTQNILFNEEN---VAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFE  162 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~---~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~  162 (241)
                      +.+++||||||+|||++.++   .+||+|||++.........  .....+|+.|+|||++.+..++.++||||||+++|+
T Consensus       124 ~~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~--~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~  201 (325)
T 3kn6_A          124 DVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQP--LKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYT  201 (325)
T ss_dssp             HTTEECCCCCGGGEEEEC----CEEEECCCTTCEECCC------------------------CCCCHHHHHHHHHHHHHH
T ss_pred             HCCCeecCCCHHHEEEecCCCcccEEEeccccceecCCCCCc--ccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHH
Confidence            89999999999999998765   8999999999865443221  233467999999999998899999999999999999


Q ss_pred             HHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          163 LLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       163 ~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      |++|..||.......  ......+...... .+...          .+.......++.+.+|+.+||+.||++|||++|
T Consensus       202 ll~g~~pf~~~~~~~--~~~~~~~~~~~i~-~~~~~----------~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~e  267 (325)
T 3kn6_A          202 MLSGQVPFQSHDRSL--TCTSAVEIMKKIK-KGDFS----------FEGEAWKNVSQEAKDLIQGLLTVDPNKRLKMSG  267 (325)
T ss_dssp             HHHSSCTTC---------CCCHHHHHHHHT-TTCCC----------CCSHHHHTSCHHHHHHHHHHHCCCTTTCCCTTT
T ss_pred             HHhCCCCCCCCcccc--ccccHHHHHHHHH-cCCCC----------CCcccccCCCHHHHHHHHHHCCCChhHCCCHHH
Confidence            999999996532211  0111112222211 11110          011111223467899999999999999999975

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=100.00  E-value=8.6e-40  Score=268.91  Aligned_cols=196  Identities=15%  Similarity=0.154  Sum_probs=161.4

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ...+.+.+|++++++++||||+++++++...+..++||||+++|+|.+++....    .....++.+|+.||.|||   +
T Consensus        83 ~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH---~  159 (350)
T 1rdq_E           83 KQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH---S  159 (350)
T ss_dssp             TCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH---H
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEEcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            456788999999999999999999999999999999999999999999986532    256789999999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhc
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      ++|+||||||+|||++.++.+||+|||++.......     ....||+.|+|||++.+..++.++||||||+++|+|++|
T Consensus       160 ~~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g  234 (350)
T 1rdq_E          160 LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT-----WTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAG  234 (350)
T ss_dssp             TTEECCCCSGGGEEECTTSCEEECCCTTCEECSSCB-----CCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHS
T ss_pred             CCcccccCccceEEECCCCCEEEcccccceeccCCc-----ccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhC
Confidence            999999999999999999999999999998764432     334689999999999988999999999999999999999


Q ss_pred             CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCC
Q 044022          167 RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT  238 (241)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt  238 (241)
                      ..||....         ..+....... +.. .     +...        .+..+.+++.+||+.||++||+
T Consensus       235 ~~Pf~~~~---------~~~~~~~i~~-~~~-~-----~p~~--------~~~~~~~li~~lL~~dp~~R~~  282 (350)
T 1rdq_E          235 YPPFFADQ---------PIQIYEKIVS-GKV-R-----FPSH--------FSSDLKDLLRNLLQVDLTKRFG  282 (350)
T ss_dssp             SCSSCCSS---------HHHHHHHHHH-CCC-C-----CCTT--------CCHHHHHHHHHHSCSCTTTCTT
T ss_pred             CCCCCCCC---------HHHHHHHHHc-CCC-C-----CCCC--------CCHHHHHHHHHHhhcCHHhccC
Confidence            99996521         1122222221 111 1     1111        2257889999999999999998

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=100.00  E-value=5.7e-40  Score=273.18  Aligned_cols=204  Identities=18%  Similarity=0.203  Sum_probs=161.9

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC--c---hHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP--L---PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~--~---~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ....+.+|++++++++||||+++++++...+..++||||+++|+|.+++....  .   ....++.|++.||.|||   +
T Consensus        91 ~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH---~  167 (387)
T 1kob_A           91 DKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMH---E  167 (387)
T ss_dssp             HHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEECCCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHH---H
T ss_pred             hHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEEcCCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH---h
Confidence            34578899999999999999999999999999999999999999999987542  2   46789999999999999   8


Q ss_pred             CCceeccCCCCCeeecC--CCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHH
Q 044022           87 RPIVLRNFKTQNILFNE--ENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~--~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~  164 (241)
                      .+++||||||+|||++.  .+.+||+|||++.........   ....||+.|+|||++.+..++.++||||||+++|+|+
T Consensus       168 ~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell  244 (387)
T 1kob_A          168 HSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIV---KVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLL  244 (387)
T ss_dssp             TTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSCE---EEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHH
T ss_pred             CCeeecccchHHeEEecCCCCceEEEecccceecCCCcce---eeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHH
Confidence            99999999999999974  478999999999876544322   2346899999999999888999999999999999999


Q ss_pred             hcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          165 AGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       165 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +|..||....         ..+......... . .. ......        ..+..+.+++.+||+.||++|||++|
T Consensus       245 tg~~Pf~~~~---------~~~~~~~i~~~~-~-~~-~~~~~~--------~~s~~~~~li~~~L~~dP~~Rpt~~e  301 (387)
T 1kob_A          245 SGLSPFAGED---------DLETLQNVKRCD-W-EF-DEDAFS--------SVSPEAKDFIKNLLQKEPRKRLTVHD  301 (387)
T ss_dssp             HSCCSSCCSS---------HHHHHHHHHHCC-C-CC-CSSTTT--------TSCHHHHHHHHTTSCSSGGGSCCHHH
T ss_pred             hCCCCCCCCC---------HHHHHHHHHhCC-C-CC-Cccccc--------cCCHHHHHHHHHHcCCChhHCcCHHH
Confidence            9999996521         112222221111 1 11 111111        12357889999999999999999853

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=2.4e-40  Score=271.56  Aligned_cols=208  Identities=20%  Similarity=0.211  Sum_probs=158.0

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC---------------------------
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA---------------------------   63 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~---------------------------   63 (241)
                      ...+.+.+|++++++++||||+++++++...+..++||||+++|+|.+++...                           
T Consensus        70 ~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (345)
T 3hko_A           70 KDVERIKTEVRLMKKLHHPNIARLYEVYEDEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEA  149 (345)
T ss_dssp             CHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCcceeehhhccCCeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccc
Confidence            45678999999999999999999999999999999999999999999998520                           


Q ss_pred             -----------------CchHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCC--CeEEeeccCceecCCCC--
Q 044022           64 -----------------PLPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEEN--VAKWFDFLLSISIPEGE--  122 (241)
Q Consensus        64 -----------------~~~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~--~~~l~df~~~~~~~~~~--  122 (241)
                                       ......++.+++.||.|||   +.+++||||||+||+++.++  .+||+|||.+.......  
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~  226 (345)
T 3hko_A          150 INGSIHGFRESLDFVQREKLISNIMRQIFSALHYLH---NQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNG  226 (345)
T ss_dssp             HHSCC--CEEECCHHHHHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC
T ss_pred             cccccccccccccccccHHHHHHHHHHHHHHHHHHH---HCCccccCCChhhEEEecCCCceEEEeeccccccccccCcc
Confidence                             0124568999999999999   89999999999999998776  89999999998653321  


Q ss_pred             cceeecccccCCCccCcccccc--cCCCcchhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCC
Q 044022          123 THITTDRVIGTRGYSAPEYISI--CVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGI  200 (241)
Q Consensus       123 ~~~~~~~~~~~~~~~aPE~~~~--~~~~~~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (241)
                      .........|++.|+|||.+.+  ..++.++||||||+++|+|++|+.||....         ..+...........  .
T Consensus       227 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~---------~~~~~~~~~~~~~~--~  295 (345)
T 3hko_A          227 EYYGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWSAGVLLHLLLMGAVPFPGVN---------DADTISQVLNKKLC--F  295 (345)
T ss_dssp             --------CCCGGGCCHHHHTCSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSS---------HHHHHHHHHHCCCC--T
T ss_pred             ccccccccCCCccccCchhhccCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCC---------hHHHHHHHHhcccc--c
Confidence            1112234568999999999875  578899999999999999999999995421         12222222221111  1


Q ss_pred             CCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          201 PAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ..+. .        ...++.+.+++.+||+.||.+|||+.|
T Consensus       296 ~~~~-~--------~~~~~~~~~li~~~l~~~p~~Rps~~~  327 (345)
T 3hko_A          296 ENPN-Y--------NVLSPLARDLLSNLLNRNVDERFDAMR  327 (345)
T ss_dssp             TSGG-G--------GGSCHHHHHHHHHHSCSCTTTSCCHHH
T ss_pred             CCcc-c--------ccCCHHHHHHHHHHcCCChhHCCCHHH
Confidence            1111 0        122367899999999999999999753

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=100.00  E-value=2.1e-40  Score=290.51  Aligned_cols=214  Identities=21%  Similarity=0.294  Sum_probs=163.6

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc-----hHHHHHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL-----PRLKIASDIV   75 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-----~~~~~~~~i~   75 (241)
                      ||++.........++|.+|++++++++|||||++++++.. +..++||||+++|+|.+++.....     ....++.+++
T Consensus       368 vK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~  446 (613)
T 2ozo_A          368 IKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVS  446 (613)
T ss_dssp             EEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEEECCTTCBHHHHHTTCTTTSCHHHHHHHHHHHH
T ss_pred             EEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEEEeCCCCcHHHHHhhccCCCCHHHHHHHHHHHH
Confidence            4566555455567889999999999999999999999976 568999999999999999865421     4678999999


Q ss_pred             HHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCc-ceeecccccCCCccCcccccccCCCcchhhH
Q 044022           76 NSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGET-HITTDRVIGTRGYSAPEYISICVLNEKSNVF  154 (241)
Q Consensus        76 ~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~-~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~  154 (241)
                      .||.|||   +++|+||||||+|||++.++.+||+|||+++....... ........+++.|+|||++.+..++.++|||
T Consensus       447 ~~L~~LH---~~~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~y~APE~~~~~~~~~~sDvw  523 (613)
T 2ozo_A          447 MGMKYLE---EKNFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVW  523 (613)
T ss_dssp             HHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCCSTTTTCC--------------CCTTSCHHHHHHCCCCHHHHHH
T ss_pred             HHHHHHH---HCCEEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCceeeeccCCCCccceeCHhhhcCCCCCcHHHHH
Confidence            9999999   89999999999999999999999999999976543221 1111223456789999999988999999999


Q ss_pred             HHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCC
Q 044022          155 SFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSP  233 (241)
Q Consensus       155 s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p  233 (241)
                      |||+++|||++ |+.||.....         .+..... ..+.....+     .        .++..+.++|.+||+.||
T Consensus       524 SlGv~l~ellt~G~~Pf~~~~~---------~~~~~~i-~~~~~~~~p-----~--------~~~~~l~~li~~cl~~dP  580 (613)
T 2ozo_A          524 SYGVTMWEALSYGQKPYKKMKG---------PEVMAFI-EQGKRMECP-----P--------ECPPELYALMSDCWIYKW  580 (613)
T ss_dssp             HHHHHHHHHHTTSCCTTTTCCS---------HHHHHHH-HTTCCCCCC-----T--------TCCHHHHHHHHHTTCSST
T ss_pred             HHHHHHHHHHHCCCCCCCCCCH---------HHHHHHH-HcCCCCCCC-----C--------cCCHHHHHHHHHHcCCCh
Confidence            99999999998 9999965221         1222222 222111111     1        223678999999999999


Q ss_pred             CCCCCCCC
Q 044022          234 EDRPTMVD  241 (241)
Q Consensus       234 ~~Rpt~~e  241 (241)
                      ++|||++|
T Consensus       581 ~~RPs~~~  588 (613)
T 2ozo_A          581 EDRPDFLT  588 (613)
T ss_dssp             TTSCCHHH
T ss_pred             hHCcCHHH
Confidence            99999753

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=100.00  E-value=1.9e-40  Score=284.52  Aligned_cols=203  Identities=20%  Similarity=0.318  Sum_probs=161.9

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC---c---hHHHHHHHHHHHhchhhcCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP---L---PRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~---~---~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ..+.|.+|++++++++||||++++++|...+..++||||+++|+|.+++....   .   ..+.++.|++.||.|||   
T Consensus       259 ~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH---  335 (495)
T 1opk_A          259 EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---  335 (495)
T ss_dssp             CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHH---
T ss_pred             chHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEEEccCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            56789999999999999999999999999999999999999999999986432   1   46788999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~  165 (241)
                      +++++||||||+|||++.++.+||+|||++........ .......++..|+|||++....++.++||||||+++|+|++
T Consensus       336 ~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t  414 (495)
T 1opk_A          336 KKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTY-TAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT  414 (495)
T ss_dssp             HTTEECSCCSGGGEEECGGGCEEECCTTCEECCTTCCE-ECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHT
T ss_pred             hCCcccCCCChhhEEECCCCcEEEeecccceeccCCce-eecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHh
Confidence            89999999999999999999999999999986644321 12223345678999999998899999999999999999999


Q ss_pred             -cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          166 -GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       166 -g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                       |..||......         +..... ..+....     ...        ..+..+.+|+.+||+.||++|||++|
T Consensus       415 ~g~~p~~~~~~~---------~~~~~~-~~~~~~~-----~~~--------~~~~~l~~li~~cl~~dP~~RPs~~e  468 (495)
T 1opk_A          415 YGMSPYPGIDLS---------QVYELL-EKDYRME-----RPE--------GCPEKVYELMRACWQWNPSDRPSFAE  468 (495)
T ss_dssp             TSCCSSTTCCGG---------GHHHHH-HTTCCCC-----CCT--------TCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             CCCCCCCCCCHH---------HHHHHH-HcCCCCC-----CCC--------CCCHHHHHHHHHHcCcChhHCcCHHH
Confidence             99998652211         111111 1111111     111        22367899999999999999999853

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=100.00  E-value=2.3e-40  Score=269.01  Aligned_cols=166  Identities=20%  Similarity=0.259  Sum_probs=139.1

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC-------Cc---hHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA-------PL---PRLKI   70 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~-------~~---~~~~~   70 (241)
                      ||.+.........+.+.+|++++++++||||+++++++..++..++||||++ ++|.+++...       ..   ....+
T Consensus        35 iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~  113 (317)
T 2pmi_A           35 LKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFEFMD-NDLKKYMDSRTVGNTPRGLELNLVKYF  113 (317)
T ss_dssp             EEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEECCC-CBHHHHHHHHHSSSCCCCCCHHHHHHH
T ss_pred             EEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEEecC-CCHHHHHHhccccccccCCCHHHHHHH
Confidence            3555444444556788999999999999999999999999999999999998 6999887532       11   35678


Q ss_pred             HHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc-CCCc
Q 044022           71 ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-VLNE  149 (241)
Q Consensus        71 ~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-~~~~  149 (241)
                      +.|++.||.|||   +.+++||||||+||+++.++.+||+|||.+.........  .....+|+.|+|||++.+. .++.
T Consensus       114 ~~qi~~aL~~lH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~--~~~~~~t~~y~aPE~~~~~~~~~~  188 (317)
T 2pmi_A          114 QWQLLQGLAFCH---ENKILHRDLKPQNLLINKRGQLKLGDFGLARAFGIPVNT--FSSEVVTLWYRAPDVLMGSRTYST  188 (317)
T ss_dssp             HHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCSSCEETTSCCCC--CCCCCSCCTTCCHHHHTTCCCCCT
T ss_pred             HHHHHHHHHHHH---HCCeeeCCCChHHeEEcCCCCEEECcCccceecCCCccc--CCCCcccccccCchHhhCCCCCCc
Confidence            899999999999   899999999999999999999999999999876433211  1234689999999999764 6899


Q ss_pred             chhhHHHHHHHHHHHhcCccccc
Q 044022          150 KSNVFSFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       150 ~~Di~s~G~~~~~~~~g~~p~~~  172 (241)
                      ++||||||+++|+|++|+.||..
T Consensus       189 ~~DiwslG~il~el~~g~~pf~~  211 (317)
T 2pmi_A          189 SIDIWSCGCILAEMITGKPLFPG  211 (317)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSCCC
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCC
Confidence            99999999999999999999964

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=100.00  E-value=4.5e-40  Score=264.56  Aligned_cols=206  Identities=22%  Similarity=0.292  Sum_probs=156.7

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ...+++.+|+.++++++||||+++++++...+..++||||+++++|.+++....    .....++.+++.||.|||   +
T Consensus        53 ~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH---~  129 (294)
T 4eqm_A           53 ETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLVMEYIEGPTLSEYIESHGPLSVDTAINFTNQILDGIKHAH---D  129 (294)
T ss_dssp             HHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHH---H
T ss_pred             HHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEEEeCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            445789999999999999999999999999999999999999999999986542    256789999999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhc
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      .+++||||||+||+++.++.++|+|||.+......... ......||+.|+|||.+.+..++.++||||||+++|+|++|
T Consensus       130 ~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g  208 (294)
T 4eqm_A          130 MRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSLT-QTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVG  208 (294)
T ss_dssp             TTCCCCCCCGGGEEECTTSCEEECCCSSSTTC--------------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHS
T ss_pred             CCcccCCCCHHHEEECCCCCEEEEeCCCcccccccccc-ccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhC
Confidence            99999999999999999999999999998765433211 12335689999999999998999999999999999999999


Q ss_pred             CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCC
Q 044022          167 RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM  239 (241)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~  239 (241)
                      +.||....         ..+......... ... ........        .+..+.+++.+||+.||++||+.
T Consensus       209 ~~pf~~~~---------~~~~~~~~~~~~-~~~-~~~~~~~~--------~~~~l~~li~~~l~~dp~~R~~~  262 (294)
T 4eqm_A          209 EPPFNGET---------AVSIAIKHIQDS-VPN-VTTDVRKD--------IPQSLSNVILRATEKDKANRYKT  262 (294)
T ss_dssp             SCSSCSSC---------HHHHHHHHHSSC-CCC-HHHHSCTT--------SCHHHHHHHHHHSCSSGGGSCSS
T ss_pred             CCCCCCCC---------hHHHHHHHhhcc-CCC-cchhcccC--------CCHHHHHHHHHHhcCCHhHcccc
Confidence            99995521         111111111111 000 00011111        22678899999999999999953

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=100.00  E-value=2.5e-40  Score=266.61  Aligned_cols=225  Identities=23%  Similarity=0.247  Sum_probs=166.0

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeC--CcceEEEEecCCCCHHHhhcCCC-----chHHHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQT--PIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASD   73 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~--~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~   73 (241)
                      ||++..+......+.+.+|++++++++||||+++++++...  ...++||||+++++|.+++....     ..+..++.+
T Consensus        55 vK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~  134 (302)
T 4e5w_A           55 VKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQ  134 (302)
T ss_dssp             EEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCEEEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             EEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceEEEEEEeCCCCcHHHHHHhccccCCHHHHHHHHHH
Confidence            46665555556678899999999999999999999999876  56899999999999999984321     146789999


Q ss_pred             HHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcc-eeecccccCCCccCcccccccCCCcchh
Q 044022           74 IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH-ITTDRVIGTRGYSAPEYISICVLNEKSN  152 (241)
Q Consensus        74 i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~-~~~~~~~~~~~~~aPE~~~~~~~~~~~D  152 (241)
                      ++.||.|||   +.+++|+||||+||+++.++.++|+|||.+......... .......+|..|+|||.+.+..++.++|
T Consensus       135 i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  211 (302)
T 4e5w_A          135 ICKGMDYLG---SRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASD  211 (302)
T ss_dssp             HHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHH
T ss_pred             HHHHHHHhh---cCCcccCCCchheEEEcCCCCEEECcccccccccCCCcceeccCCCCCCccccCCeeecCCCCCcchh
Confidence            999999999   899999999999999999999999999999876554322 2223455778899999999888999999


Q ss_pred             hHHHHHHHHHHHhcCccccccccc-----CCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHH
Q 044022          153 VFSFGAFLFELLAGRIHIWDLLKD-----THDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLE  227 (241)
Q Consensus       153 i~s~G~~~~~~~~g~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  227 (241)
                      |||||+++|+|++|..|+......     .......................     ...        ..++.+.+++.+
T Consensus       212 i~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--------~~~~~l~~li~~  278 (302)
T 4e5w_A          212 VWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEGKRLP-----CPP--------NCPDEVYQLMRK  278 (302)
T ss_dssp             HHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGGGHHHHHHHHHHTTCCCC-----CCT--------TCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCCCcchhhHHhhccCCcccccCHHHHHHHHhccCCCC-----CCC--------CCCHHHHHHHHH
Confidence            999999999999999987442110     00011111111111111111111     111        122678999999


Q ss_pred             hccCCCCCCCCCCC
Q 044022          228 CVNNSPEDRPTMVD  241 (241)
Q Consensus       228 cl~~~p~~Rpt~~e  241 (241)
                      ||+.||++|||++|
T Consensus       279 ~l~~dp~~Rps~~~  292 (302)
T 4e5w_A          279 CWEFQPSNRTSFQN  292 (302)
T ss_dssp             TTCSSGGGSCCHHH
T ss_pred             HcCCCCCCCCCHHH
Confidence            99999999999853

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=100.00  E-value=2e-40  Score=268.71  Aligned_cols=216  Identities=21%  Similarity=0.352  Sum_probs=168.0

Q ss_pred             CcccccccccccHHHHHHHHHHHHhc-CCCcccceeeeeeeCC-cceEEEEecCCCCHHHhhcCCC--------------
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQM-SHNHILKRIGCCLQTP-IPILVFQSVEYGTLRDCIFGAP--------------   64 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~-~~~lv~e~~~~~sL~~~l~~~~--------------   64 (241)
                      ||++.........+.+.+|+++++++ +||||+++++++...+ ..++||||+++++|.+++....              
T Consensus        62 vK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~  141 (316)
T 2xir_A           62 VKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLY  141 (316)
T ss_dssp             EEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------C
T ss_pred             EEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEEEEEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhh
Confidence            35555444444567899999999999 7899999999988755 5899999999999999987642              


Q ss_pred             ---c---hHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccC
Q 044022           65 ---L---PRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA  138 (241)
Q Consensus        65 ---~---~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~a  138 (241)
                         .   ....++.+++.||.|||   +.+++||||||+||+++.++.++|+|||.+................+++.|+|
T Consensus       142 ~~~~~~~~~~~~~~qi~~al~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~a  218 (316)
T 2xir_A          142 KDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMA  218 (316)
T ss_dssp             TTCEEHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCC
T ss_pred             ccccCHHHHHHHHHHHHHHHHHHH---hCCcccccCccceEEECCCCCEEECCCccccccccCccceeccCCCcceeecC
Confidence               1   35778999999999999   89999999999999999999999999999987655444344445567889999


Q ss_pred             cccccccCCCcchhhHHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHH
Q 044022          139 PEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQ  217 (241)
Q Consensus       139 PE~~~~~~~~~~~Di~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (241)
                      ||.+.+..++.++||||||+++|+|++ |..||......        ...... ...+.....+     ..        .
T Consensus       219 PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~--------~~~~~~-~~~~~~~~~~-----~~--------~  276 (316)
T 2xir_A          219 PETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKID--------EEFCRR-LKEGTRMRAP-----DY--------T  276 (316)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCS--------HHHHHH-HHHTCCCCCC-----TT--------C
T ss_pred             chhhccccccchhHHHHHHHHHHHHHhCCCCCCcccchh--------HHHHHH-hccCccCCCC-----CC--------C
Confidence            999998899999999999999999998 99999542111        111111 1122111111     11        1


Q ss_pred             HHHHHHHHHHhccCCCCCCCCCCC
Q 044022          218 LHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       218 ~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +..+.+++.+||+.||++|||++|
T Consensus       277 ~~~l~~li~~~l~~dp~~Rps~~e  300 (316)
T 2xir_A          277 TPEMYQTMLDCWHGEPSQRPTFSE  300 (316)
T ss_dssp             CHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             CHHHHHHHHHHcCCChhhCcCHHH
Confidence            257889999999999999999853

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=100.00  E-value=1.2e-39  Score=264.13  Aligned_cols=155  Identities=20%  Similarity=0.250  Sum_probs=133.7

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc-----hHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL-----PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-----~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ....+.+|++++++++||||+++++++..++..++||||++ ++|.+.+.....     ....++.|++.||.|||   +
T Consensus        62 ~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~  137 (311)
T 3niz_A           62 IPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVFEFME-KDLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCH---Q  137 (311)
T ss_dssp             HHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEEECCS-EEHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHH---H
T ss_pred             hhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEEcCCC-CCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            45678899999999999999999999999999999999997 588887765421     46788999999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc-cCCCcchhhHHHHHHHHHHHh
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI-CVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~~~~~~~  165 (241)
                      .+++||||||+|||++.++.+||+|||.+.........  .....+|+.|+|||++.+ ..++.++||||||+++|+|++
T Consensus       138 ~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~--~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~  215 (311)
T 3niz_A          138 HRILHRDLKPQNLLINSDGALKLADFGLARAFGIPVRS--YTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMIT  215 (311)
T ss_dssp             TTEECCCCCGGGEEECTTCCEEECCCTTCEETTSCCC-----CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHH
T ss_pred             CCcccCCCchHhEEECCCCCEEEccCcCceecCCCccc--ccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHh
Confidence            99999999999999999999999999999876533221  133468999999999876 468999999999999999999


Q ss_pred             cCccccc
Q 044022          166 GRIHIWD  172 (241)
Q Consensus       166 g~~p~~~  172 (241)
                      |+.||..
T Consensus       216 g~~pf~~  222 (311)
T 3niz_A          216 GKPLFPG  222 (311)
T ss_dssp             SSCSCCC
T ss_pred             CCCCCCC
Confidence            9999965

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=100.00  E-value=1.7e-40  Score=278.00  Aligned_cols=207  Identities=15%  Similarity=0.207  Sum_probs=163.5

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc---hHHHHHHHHHHHhchhhcCCCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL---PRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      .....+.+|+.+++.++||||++++++|...+..++||||+++|+|.+++.....   ....++.+|+.||.|||   ++
T Consensus       111 ~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~e~~~~~~~~qi~~aL~~LH---~~  187 (410)
T 3v8s_A          111 SDSAFFWEERDIMAFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIH---SM  187 (410)
T ss_dssp             CCCSTHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH---HT
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HC
Confidence            3455688999999999999999999999999999999999999999999876543   46778999999999999   89


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccC----CCcchhhHHHHHHHHHH
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICV----LNEKSNVFSFGAFLFEL  163 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~----~~~~~Di~s~G~~~~~~  163 (241)
                      +|+||||||+|||++.++.+||+|||++........ .......||+.|+|||++.+..    ++.++||||||+++|+|
T Consensus       188 givHrDLKp~NILl~~~g~ikL~DFG~a~~~~~~~~-~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyel  266 (410)
T 3v8s_A          188 GFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGM-VRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEM  266 (410)
T ss_dssp             TEECCCCSGGGEEECTTSCEEECCCTTCEECCTTSE-EECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHH
T ss_pred             CeEeccCCHHHeeECCCCCEEEeccceeEeeccCCc-ccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHH
Confidence            999999999999999999999999999987654432 2224567999999999998655    78899999999999999


Q ss_pred             HhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCC--CCCCCC
Q 044022          164 LAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPED--RPTMVD  241 (241)
Q Consensus       164 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~--Rpt~~e  241 (241)
                      ++|+.||...         ...+..............+..   .        ..+..+.+|+.+||..+|.+  |||++|
T Consensus       267 l~G~~Pf~~~---------~~~~~~~~i~~~~~~~~~p~~---~--------~~s~~~~~li~~lL~~~~~rlgR~~~~e  326 (410)
T 3v8s_A          267 LVGDTPFYAD---------SLVGTYSKIMNHKNSLTFPDD---N--------DISKEAKNLICAFLTDREVRLGRNGVEE  326 (410)
T ss_dssp             HHSSCTTCCS---------SHHHHHHHHHTHHHHCCCCTT---C--------CCCHHHHHHHHHHSSCGGGCTTSSCHHH
T ss_pred             HhCCCCCCCC---------ChhhHHHHHHhccccccCCCc---c--------cccHHHHHHHHHHccChhhhCCCCCHHH
Confidence            9999999642         112222222221111111111   0        11257889999999999988  998753

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=100.00  E-value=1.7e-40  Score=266.93  Aligned_cols=215  Identities=23%  Similarity=0.313  Sum_probs=156.9

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeee--CCcceEEEEecCCCCHHHhhcCCCc-----hHHHHHHHHHHHhchhhc
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQ--TPIPILVFQSVEYGTLRDCIFGAPL-----PRLKIASDIVNSLAYLHF   83 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~--~~~~~lv~e~~~~~sL~~~l~~~~~-----~~~~~~~~i~~~l~~lh~   83 (241)
                      ...+.+.+|++++++++||||+++++++..  ....++||||+++++|.+++.....     ....++.+++.||.||| 
T Consensus        53 ~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH-  131 (295)
T 3ugc_A           53 EHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLG-  131 (295)
T ss_dssp             HHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSCEEEEECCTTCBHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCceEEEEEeCCCCCHHHHHHhcccccCHHHHHHHHHHHHHHHHHHh-
Confidence            345779999999999999999999999864  3568999999999999999865421     46789999999999999 


Q ss_pred             CCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcc-eeecccccCCCccCcccccccCCCcchhhHHHHHHHHH
Q 044022           84 GFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH-ITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFE  162 (241)
Q Consensus        84 ~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~-~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~  162 (241)
                        +.+++||||||+||+++.++.+||+|||.+......... .......++..|+|||.+.+..++.++||||||+++|+
T Consensus       132 --~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~  209 (295)
T 3ugc_A          132 --TKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYE  209 (295)
T ss_dssp             --HTTCCCSCCSGGGEEEEETTEEEECCCCSCC-------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred             --cCCcccCCCCHhhEEEcCCCeEEEccCcccccccCCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHH
Confidence              899999999999999999999999999999765443221 11223346677999999998999999999999999999


Q ss_pred             HHhcCccccccccc------CCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCC
Q 044022          163 LLAGRIHIWDLLKD------THDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDR  236 (241)
Q Consensus       163 ~~~g~~p~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~R  236 (241)
                      |++|..|+......      ........................     ..        ..+..+.+++.+||+.||++|
T Consensus       210 l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--------~~~~~l~~li~~~l~~dp~~R  276 (295)
T 3ugc_A          210 LFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPR-----PD--------GCPDEIYMIMTECWNNNVNQR  276 (295)
T ss_dssp             HHHTTCTTCSHHHHHHHHHCTTCCTHHHHHHHHHHHHTTCCCCC-----CT--------TCCHHHHHHHHHHSCSSGGGS
T ss_pred             HHhcccccCCChHHHHhhhcCccccchhHHHHHHHHhccCcCCC-----Cc--------CcCHHHHHHHHHHcCCChhhC
Confidence            99999988542111      000000001111111111111111     11        223678999999999999999


Q ss_pred             CCCCC
Q 044022          237 PTMVD  241 (241)
Q Consensus       237 pt~~e  241 (241)
                      ||++|
T Consensus       277 ps~~e  281 (295)
T 3ugc_A          277 PSFRD  281 (295)
T ss_dssp             CCHHH
T ss_pred             CCHHH
Confidence            99853

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=100.00  E-value=1.9e-39  Score=276.26  Aligned_cols=201  Identities=25%  Similarity=0.308  Sum_probs=162.6

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      .....+.+|+++++.++||||+++++++...+..++||||+++|+|.+++.....    ....++.||+.||.|||   +
T Consensus        58 ~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH---~  134 (476)
T 2y94_A           58 DVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVMEYVSGGELFDYICKNGRLDEKESRRLFQQILSGVDYCH---R  134 (476)
T ss_dssp             TTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCSSEEHHHHTTSSSSCCHHHHHHHHHHHHHHHHHHH---T
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            3456789999999999999999999999999999999999999999999976532    46789999999999999   9


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCC-CcchhhHHHHHHHHHHHh
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVL-NEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~-~~~~Di~s~G~~~~~~~~  165 (241)
                      .+++||||||+|||++.++.+||+|||++........   .....||+.|+|||++.+..+ +.++||||||+++|+|++
T Consensus       135 ~givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~ellt  211 (476)
T 2y94_A          135 HMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEF---LRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLC  211 (476)
T ss_dssp             TTEECSCCSGGGEEECTTCCEEECCCSSCEECCTTCC---BCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcccccHHHEEEecCCCeEEEeccchhhcccccc---ccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhh
Confidence            9999999999999999999999999999987654332   133478999999999987765 689999999999999999


Q ss_pred             cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          166 GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       166 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      |..||....         ......... .+.. ..     ...        .+..+.+++.+||..||++|||++|
T Consensus       212 G~~Pf~~~~---------~~~~~~~i~-~~~~-~~-----p~~--------~s~~~~~Li~~~L~~dP~~Rpt~~e  263 (476)
T 2y94_A          212 GTLPFDDDH---------VPTLFKKIC-DGIF-YT-----PQY--------LNPSVISLLKHMLQVDPMKRATIKD  263 (476)
T ss_dssp             SSCSSCCSS---------SHHHHHHHH-TTCC-CC-----CTT--------CCHHHHHHHHHHTCSSTTTSCCHHH
T ss_pred             CCCCCCCCC---------HHHHHHHHh-cCCc-CC-----Ccc--------CCHHHHHHHHHHcCCCchhCcCHHH
Confidence            999996521         112222221 1111 00     111        1256889999999999999999853

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=100.00  E-value=4.2e-40  Score=268.56  Aligned_cols=211  Identities=18%  Similarity=0.232  Sum_probs=157.0

Q ss_pred             cccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHHHh
Q 044022            4 YGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVNSL   78 (241)
Q Consensus         4 ~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~~l   78 (241)
                      +.........+.+.+|+.++++++||||+++++++.... .++|++++.+|+|.+++....     ...+.++.|++.||
T Consensus        52 ~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~~v~~~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL  130 (327)
T 3lzb_A           52 LREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGM  130 (327)
T ss_dssp             ECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-EEEEECCCSSCBHHHHHHHTTTCCCHHHHHHHHHHHHHHH
T ss_pred             eccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-ceEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence            333334456788999999999999999999999998765 789999999999999986532     14678999999999


Q ss_pred             chhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHH
Q 044022           79 AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGA  158 (241)
Q Consensus        79 ~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~  158 (241)
                      .|||   +.+++||||||+|||++.++.+||+|||++................+++.|+|||.+.+..++.++||||||+
T Consensus       131 ~~LH---~~~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~  207 (327)
T 3lzb_A          131 NYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGV  207 (327)
T ss_dssp             HHHH---HTTCCCSCCCGGGEEEEETTEEEECCTTC----------------CCCGGGSCHHHHHHCCCCHHHHHHHHHH
T ss_pred             HHHh---hCCCcCCCCCHHHEEEcCCCCEEEccCcceeEccCccccccccCCCccccccCHHHHcCCCCChHHHHHHHHH
Confidence            9999   8999999999999999999999999999998765443333333345677899999999999999999999999


Q ss_pred             HHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCC
Q 044022          159 FLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRP  237 (241)
Q Consensus       159 ~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rp  237 (241)
                      ++|+|++ |..||......         +..... ........     ..        ..+..+.+++.+||+.||.+||
T Consensus       208 il~ell~~g~~p~~~~~~~---------~~~~~~-~~~~~~~~-----~~--------~~~~~l~~li~~~l~~dp~~Rp  264 (327)
T 3lzb_A          208 TVWELMTFGSKPYDGIPAS---------EISSIL-EKGERLPQ-----PP--------ICTIDVYMIMRKCWMIDADSRP  264 (327)
T ss_dssp             HHHHHHTTSCCTTTTCCGG---------GHHHHH-HTTCCCCC-----CT--------TBCHHHHHHHHHHTCSSGGGSC
T ss_pred             HHHHHHHCCCCCCCCCCHH---------HHHHHH-HcCCCCCC-----Cc--------cCCHHHHHHHHHHcCCChhHCc
Confidence            9999999 99999652211         111111 11111111     11        1225688999999999999999


Q ss_pred             CCCC
Q 044022          238 TMVD  241 (241)
Q Consensus       238 t~~e  241 (241)
                      |++|
T Consensus       265 s~~e  268 (327)
T 3lzb_A          265 KFRE  268 (327)
T ss_dssp             CHHH
T ss_pred             CHHH
Confidence            9753

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=100.00  E-value=3.1e-40  Score=273.77  Aligned_cols=204  Identities=20%  Similarity=0.232  Sum_probs=161.7

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ..+.+.+|++++++++||||+++++++...+..++||||+++++|.+++....     .....++.|++.||.|||   +
T Consensus       129 ~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH---~  205 (373)
T 2x4f_A          129 DKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGELFDRIIDESYNLTELDTILFMKQICEGIRHMH---Q  205 (373)
T ss_dssp             HHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTCEEHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHH---H
T ss_pred             cHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            46779999999999999999999999999999999999999999998875432     246788999999999999   8


Q ss_pred             CCceeccCCCCCeee--cCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHH
Q 044022           87 RPIVLRNFKTQNILF--NEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        87 ~~ivh~dl~~~nil~--~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~  164 (241)
                      .+++||||||+|||+  +.++.+||+|||++.........   ....||+.|+|||++.+..++.++||||||+++|+|+
T Consensus       206 ~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell  282 (373)
T 2x4f_A          206 MYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREKL---KVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLL  282 (373)
T ss_dssp             TTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCBC---CCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCcccccCCHHHEEEecCCCCcEEEEeCCCceecCCcccc---ccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHH
Confidence            999999999999999  56788999999999876543321   2346899999999999888999999999999999999


Q ss_pred             hcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          165 AGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       165 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +|..||....         ..+......... . .... ....        ..++.+.+|+.+||+.||++|||++|
T Consensus       283 tg~~pf~~~~---------~~~~~~~i~~~~-~-~~~~-~~~~--------~~~~~~~~li~~~L~~dp~~Rps~~e  339 (373)
T 2x4f_A          283 SGLSPFLGDN---------DAETLNNILACR-W-DLED-EEFQ--------DISEEAKEFISKLLIKEKSWRISASE  339 (373)
T ss_dssp             HSSCTTCCSS---------HHHHHHHHHHTC-C-CSCS-GGGT--------TSCHHHHHHHHTTSCSSGGGSCCHHH
T ss_pred             hCCCCCCCCC---------HHHHHHHHHhcc-C-CCCh-hhhc--------cCCHHHHHHHHHHcCCChhhCCCHHH
Confidence            9999995421         112222222111 0 1111 1111        12367899999999999999999853

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=100.00  E-value=1.9e-39  Score=264.61  Aligned_cols=199  Identities=19%  Similarity=0.201  Sum_probs=151.7

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ....+.+|++++++++||||+++++++...+..++||||+++++|.+++....    .....++.+++.||.|||   +.
T Consensus        64 ~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH---~~  140 (327)
T 3a62_A           64 DTAHTKAERNILEEVKHPFIVDLIYAFQTGGKLYLILEYLSGGELFMQLEREGIFMEDTACFYLAEISMALGHLH---QK  140 (327)
T ss_dssp             -------HHHHHHHCCCTTBCCEEEEEECSSCEEEEEECCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---HT
T ss_pred             HHHHHHHHHHHHHhCCCCCccceeEEEEcCCEEEEEEeCCCCCcHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH---hC
Confidence            45668899999999999999999999999999999999999999999986532    246778999999999999   89


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcC
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR  167 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~  167 (241)
                      +++||||||+|||++.++.+||+|||++........  ......|++.|+|||.+.+..++.++||||||+++|+|++|+
T Consensus       141 ~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~  218 (327)
T 3a62_A          141 GIIYRDLKPENIMLNHQGHVKLTDFGLCKESIHDGT--VTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGA  218 (327)
T ss_dssp             TCCCCCCCTTTEEECTTSCEEECCCSCC------------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSS
T ss_pred             CEEcccCCHHHeEECCCCcEEEEeCCcccccccCCc--cccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCC
Confidence            999999999999999999999999999875433221  123456899999999999888999999999999999999999


Q ss_pred             cccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCC
Q 044022          168 IHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM  239 (241)
Q Consensus       168 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~  239 (241)
                      .||....         ..+......... . .     +...        .+..+.+++.+||+.||++||++
T Consensus       219 ~pf~~~~---------~~~~~~~i~~~~-~-~-----~p~~--------~~~~~~~li~~~L~~dp~~R~~~  266 (327)
T 3a62_A          219 PPFTGEN---------RKKTIDKILKCK-L-N-----LPPY--------LTQEARDLLKKLLKRNAASRLGA  266 (327)
T ss_dssp             CSCCCSS---------HHHHHHHHHHTC-C-C-----CCTT--------SCHHHHHHHHHHSCSCGGGSTTS
T ss_pred             CCCCCCC---------HHHHHHHHHhCC-C-C-----CCCC--------CCHHHHHHHHHHHhcCHhhccCC
Confidence            9996521         112222222111 0 1     1111        12578899999999999999965

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=100.00  E-value=1.4e-39  Score=264.72  Aligned_cols=204  Identities=19%  Similarity=0.264  Sum_probs=163.4

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ..+.+.+|+.++++++||||+++++++...+..++||||+++++|.+++.....    ....++.+++.||.|||   +.
T Consensus        58 ~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH---~~  134 (321)
T 2a2a_A           58 SREEIEREVSILRQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLH---TK  134 (321)
T ss_dssp             CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHTCSCEEHHHHHHHHHHHHHHHHHHH---HT
T ss_pred             hHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEEEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hC
Confidence            467799999999999999999999999999999999999999999999976532    46789999999999999   89


Q ss_pred             CceeccCCCCCeeecCCC----CeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHH
Q 044022           88 PIVLRNFKTQNILFNEEN----VAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL  163 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~----~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~  163 (241)
                      +++|+||||+||+++.++    .++|+|||.+........   .....|++.|+|||.+.+..++.++||||||+++|+|
T Consensus       135 ~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l  211 (321)
T 2a2a_A          135 KIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVE---FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYIL  211 (321)
T ss_dssp             TEECCCCSGGGEEESCTTSSSCCEEECCCTTCEECCTTCC---CCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHH
T ss_pred             CeecCCCChHHEEEecCCCCcCCEEEccCccceecCcccc---ccccCCCCCccCcccccCCCCCCccccHHHHHHHHHH
Confidence            999999999999999888    799999999987654322   1234689999999999988999999999999999999


Q ss_pred             HhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          164 LAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       164 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ++|..||....         ..+......... .  ...+....        ..+..+.+++.+||+.||++|||++|
T Consensus       212 ~~g~~pf~~~~---------~~~~~~~i~~~~-~--~~~~~~~~--------~~~~~~~~li~~~l~~dp~~Rps~~e  269 (321)
T 2a2a_A          212 LSGASPFLGDT---------KQETLANITSVS-Y--DFDEEFFS--------HTSELAKDFIRKLLVKETRKRLTIQE  269 (321)
T ss_dssp             HHSCCSSCCSS---------HHHHHHHHHTTC-C--CCCHHHHT--------TCCHHHHHHHHTTSCSSTTTSCCHHH
T ss_pred             HHCCCCCCCCC---------HHHHHHHHHhcc-c--ccChhhhc--------ccCHHHHHHHHHHcCCChhhCcCHHH
Confidence            99999995421         112222211111 0  00111111        22357899999999999999999753

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=100.00  E-value=1.2e-39  Score=262.85  Aligned_cols=213  Identities=22%  Similarity=0.304  Sum_probs=170.4

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc---hHHHHHHHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL---PRLKIASDIVNS   77 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~i~~~   77 (241)
                      ||++.........+.+.+|+.++++++||||+++++++...+..++||||+++++|.+++.....   ....++.+++.|
T Consensus        52 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~  131 (303)
T 3a7i_A           52 IKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGPLDETQIATILREILKG  131 (303)
T ss_dssp             EEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTEEHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred             EEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEEeCCCCcHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            46665555455678899999999999999999999999999999999999999999999976543   467899999999


Q ss_pred             hchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHH
Q 044022           78 LAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFG  157 (241)
Q Consensus        78 l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G  157 (241)
                      |.|||   +.+++|+||+|+||+++.++.++|+|||.+........  ......+++.|+|||.+.+..++.++||||||
T Consensus       132 l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG  206 (303)
T 3a7i_A          132 LDYLH---SEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQI--KRNTFVGTPFWMAPEVIKQSAYDSKADIWSLG  206 (303)
T ss_dssp             HHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECBTTBC--CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHH
T ss_pred             HHHHH---HCCCccCCCChheEEECCCCCEEEeecccceecCcccc--ccCccCCCcCccCHHHHhcCCCCchhhhHHHH
Confidence            99999   89999999999999999999999999999977654322  12345688999999999988999999999999


Q ss_pred             HHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCC
Q 044022          158 AFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRP  237 (241)
Q Consensus       158 ~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rp  237 (241)
                      +++|+|++|..||....         ..+..... .....     +.+....        +..+.+++.+||+.||++||
T Consensus       207 ~il~~l~~g~~p~~~~~---------~~~~~~~~-~~~~~-----~~~~~~~--------~~~l~~li~~~l~~dp~~Rp  263 (303)
T 3a7i_A          207 ITAIELARGEPPHSELH---------PMKVLFLI-PKNNP-----PTLEGNY--------SKPLKEFVEACLNKEPSFRP  263 (303)
T ss_dssp             HHHHHHHHSSCTTTTSC---------HHHHHHHH-HHSCC-----CCCCSSC--------CHHHHHHHHHHCCSSGGGSC
T ss_pred             HHHHHHccCCCCCCCcC---------HHHHHHHh-hcCCC-----CCCcccc--------CHHHHHHHHHHcCCChhhCc
Confidence            99999999999995421         11111111 11111     1111222        25688999999999999999


Q ss_pred             CCCC
Q 044022          238 TMVD  241 (241)
Q Consensus       238 t~~e  241 (241)
                      |++|
T Consensus       264 s~~~  267 (303)
T 3a7i_A          264 TAKE  267 (303)
T ss_dssp             CHHH
T ss_pred             CHHH
Confidence            9853

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2e-40  Score=274.83  Aligned_cols=214  Identities=20%  Similarity=0.259  Sum_probs=154.4

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeeee-CCcceEEEEecCCCCHHHhhcCCCc-----hHHHHHHHHH
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQ-TPIPILVFQSVEYGTLRDCIFGAPL-----PRLKIASDIV   75 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~lv~e~~~~~sL~~~l~~~~~-----~~~~~~~~i~   75 (241)
                      |.+.........++|.+|+.++++++||||+++++++.. .+..++||||+++|+|.+++.....     ....++.|++
T Consensus       123 K~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~  202 (373)
T 3c1x_A          123 KSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVA  202 (373)
T ss_dssp             EECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEEEECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHH
T ss_pred             EEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEEEECCCCCCHHHHHhhcccCCCHHHHHHHHHHHH
Confidence            444443444557789999999999999999999998754 5578999999999999999976432     4678899999


Q ss_pred             HHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcc--eeecccccCCCccCcccccccCCCcchhh
Q 044022           76 NSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH--ITTDRVIGTRGYSAPEYISICVLNEKSNV  153 (241)
Q Consensus        76 ~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~--~~~~~~~~~~~~~aPE~~~~~~~~~~~Di  153 (241)
                      .||.|||   +.+++||||||+|||++.++.+||+|||++.........  .......+++.|+|||++.+..++.++||
T Consensus       203 ~aL~~LH---~~~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv  279 (373)
T 3c1x_A          203 KGMKFLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDV  279 (373)
T ss_dssp             HHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCC---------------------CCGGGSCHHHHHHCCCCHHHHH
T ss_pred             HHHHHHH---HCCEecCccchheEEECCCCCEEEeeccccccccccccccccccCCCCCcccccChHHhcCCCCCcHHHH
Confidence            9999999   899999999999999999999999999999765432211  11123356778999999998899999999


Q ss_pred             HHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCC
Q 044022          154 FSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNS  232 (241)
Q Consensus       154 ~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~  232 (241)
                      ||||+++|+|++ |.+||.......      .   .... ..+....     ...        ..+..+.+++.+||+.|
T Consensus       280 wSlG~il~ellt~~~~p~~~~~~~~------~---~~~~-~~~~~~~-----~p~--------~~~~~l~~li~~cl~~d  336 (373)
T 3c1x_A          280 WSFGVLLWELMTRGAPPYPDVNTFD------I---TVYL-LQGRRLL-----QPE--------YCPDPLYEVMLKCWHPK  336 (373)
T ss_dssp             HHHHHHHHHHHTTSCCSCTTSCSSC------H---HHHH-HTTCCCC-----CCT--------TCCHHHHHHHHHHTCSS
T ss_pred             HHHHHHHHHHHhCcCCCCCCCCHHH------H---HHHH-HcCCCCC-----CCC--------CCCHHHHHHHHHHcCCC
Confidence            999999999999 677775422111      1   1111 1111111     111        12257889999999999


Q ss_pred             CCCCCCCCC
Q 044022          233 PEDRPTMVD  241 (241)
Q Consensus       233 p~~Rpt~~e  241 (241)
                      |++|||++|
T Consensus       337 p~~RPs~~e  345 (373)
T 3c1x_A          337 AEMRPSFSE  345 (373)
T ss_dssp             GGGSCCHHH
T ss_pred             hhhCcCHHH
Confidence            999999753

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.1e-39  Score=266.59  Aligned_cols=213  Identities=23%  Similarity=0.300  Sum_probs=159.7

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHH
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVN   76 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~   76 (241)
                      |.+...........+.+|++++++++||||+++++++...+..++||||+++++|.+++....     ..++.++.+++.
T Consensus        79 K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~  158 (333)
T 1mqb_A           79 KTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAA  158 (333)
T ss_dssp             EEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHH
T ss_pred             EEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcEEEEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence            455444444456679999999999999999999999999999999999999999999986532     146789999999


Q ss_pred             HhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcc-eeecccccCCCccCcccccccCCCcchhhHH
Q 044022           77 SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH-ITTDRVIGTRGYSAPEYISICVLNEKSNVFS  155 (241)
Q Consensus        77 ~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~-~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s  155 (241)
                      ||.|||   +.+++||||||+||+++.++.+||+|||.+......... .......++..|+|||.+.+..++.++||||
T Consensus       159 aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s  235 (333)
T 1mqb_A          159 GMKYLA---NMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWS  235 (333)
T ss_dssp             HHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCCCC-----------------CCCGGGSCHHHHHSCCCCHHHHHHH
T ss_pred             HHHHHH---hCCeeCCCCChheEEECCCCcEEECCCCcchhhccccccccccCCCCccccccCchhcccCCCCchhhhHH
Confidence            999999   899999999999999999999999999998765433211 1112234577899999999889999999999


Q ss_pred             HHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCC
Q 044022          156 FGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPE  234 (241)
Q Consensus       156 ~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~  234 (241)
                      ||+++|++++ |..||....         ..+....... +.....     ..        ..+..+.+++.+||+.||+
T Consensus       236 lG~il~ellt~g~~pf~~~~---------~~~~~~~~~~-~~~~~~-----~~--------~~~~~l~~li~~~l~~~p~  292 (333)
T 1mqb_A          236 FGIVMWEVMTYGERPYWELS---------NHEVMKAIND-GFRLPT-----PM--------DCPSAIYQLMMQCWQQERA  292 (333)
T ss_dssp             HHHHHHHHHTTSCCTTTTCC---------HHHHHHHHHT-TCCCCC-----CT--------TCBHHHHHHHHHHTCSSTT
T ss_pred             HHHHHHHHHcCCCCCcccCC---------HHHHHHHHHC-CCcCCC-----cc--------cCCHHHHHHHHHHcCCChh
Confidence            9999999998 999995421         1122222211 111110     11        1225789999999999999


Q ss_pred             CCCCCC
Q 044022          235 DRPTMV  240 (241)
Q Consensus       235 ~Rpt~~  240 (241)
                      +|||+.
T Consensus       293 ~Rps~~  298 (333)
T 1mqb_A          293 RRPKFA  298 (333)
T ss_dssp             TSCCHH
T ss_pred             hCcCHH
Confidence            999975

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=100.00  E-value=8.2e-40  Score=259.72  Aligned_cols=202  Identities=25%  Similarity=0.371  Sum_probs=153.1

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc---hHHHHHHHHHHHhchhhcCCCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL---PRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ...+.+.+|++++++++||||+++++++...+..++||||+++++|.+++.....   ....++.+++.||.|||   +.
T Consensus        48 ~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~i~~~l~~~l~~lH---~~  124 (271)
T 3dtc_A           48 QTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRVLSGKRIPPDILVNWAVQIARGMNYLH---DE  124 (271)
T ss_dssp             -CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEEEECCTTEEHHHHHTSSCCCHHHHHHHHHHHHHHHHHHH---HS
T ss_pred             HHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEEEcCCCCCHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH---hC
Confidence            4467899999999999999999999999999999999999999999999876543   46789999999999999   77


Q ss_pred             C---ceeccCCCCCeeecC--------CCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHH
Q 044022           88 P---IVLRNFKTQNILFNE--------ENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSF  156 (241)
Q Consensus        88 ~---ivh~dl~~~nil~~~--------~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~  156 (241)
                      +   ++||||||+||+++.        ++.++|+|||.+........    ....+++.|+|||.+.+..++.++|||||
T Consensus       125 ~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Di~sl  200 (271)
T 3dtc_A          125 AIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTK----MSAAGAYAWMAPEVIRASMFSKGSDVWSY  200 (271)
T ss_dssp             SSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC-----------------CCGGGSCHHHHHHCCCSHHHHHHHH
T ss_pred             CCCceeecCCchHHEEEecccccccccCcceEEccCCcccccccccc----cCCCCccceeCHHHhccCCCCchhhHHHH
Confidence            7   899999999999986        67899999999976544322    23468899999999998889999999999


Q ss_pred             HHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCC
Q 044022          157 GAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDR  236 (241)
Q Consensus       157 G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~R  236 (241)
                      |+++|+|++|+.||....         ...............     ....        ..++.+.+++.+||+.||++|
T Consensus       201 G~~l~~l~~g~~p~~~~~---------~~~~~~~~~~~~~~~-----~~~~--------~~~~~~~~li~~~l~~~p~~R  258 (271)
T 3dtc_A          201 GVLLWELLTGEVPFRGID---------GLAVAYGVAMNKLAL-----PIPS--------TCPEPFAKLMEDCWNPDPHSR  258 (271)
T ss_dssp             HHHHHHHHHCCCTTTTSC---------HHHHHHHHHTSCCCC-----CCCT--------TCCHHHHHHHHHHTCSSGGGS
T ss_pred             HHHHHHHHhCCCCCCCCC---------HHHHHHhhhcCCCCC-----CCCc--------ccCHHHHHHHHHHhcCCcccC
Confidence            999999999999996521         111111111111111     1111        122578999999999999999


Q ss_pred             CCCCC
Q 044022          237 PTMVD  241 (241)
Q Consensus       237 pt~~e  241 (241)
                      ||++|
T Consensus       259 ps~~e  263 (271)
T 3dtc_A          259 PSFTN  263 (271)
T ss_dssp             CCHHH
T ss_pred             cCHHH
Confidence            99853

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=5e-40  Score=263.28  Aligned_cols=214  Identities=20%  Similarity=0.278  Sum_probs=166.3

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIV   75 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~   75 (241)
                      ||++.........+++.+|++++++++||||+++++++ ..+..++||||+++++|.+++....     .....++.+++
T Consensus        42 vK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~  120 (287)
T 1u59_A           42 IKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVS  120 (287)
T ss_dssp             EEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSSEEEEEECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHH
T ss_pred             EEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCCcEEEEEeCCCCCHHHHHHhCCccCCHHHHHHHHHHHH
Confidence            35555444445677899999999999999999999999 5667899999999999999986432     14678999999


Q ss_pred             HHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcc-eeecccccCCCccCcccccccCCCcchhhH
Q 044022           76 NSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH-ITTDRVIGTRGYSAPEYISICVLNEKSNVF  154 (241)
Q Consensus        76 ~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~-~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~  154 (241)
                      .||.|||   +.+++|+||||+||+++.++.++|+|||.+......... .......+++.|+|||.+.+..++.++|||
T Consensus       121 ~~l~~lH---~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~  197 (287)
T 1u59_A          121 MGMKYLE---EKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVW  197 (287)
T ss_dssp             HHHHHHH---HTTEECCCCSGGGEEEEETTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHH
T ss_pred             HHHHHHH---HCCEeeCCCchheEEEcCCCCEEECcccceeeeccCcceeeccccccccccccCHHHhccCCCCchhhHH
Confidence            9999999   899999999999999999999999999999876543322 112233467889999999888899999999


Q ss_pred             HHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCC
Q 044022          155 SFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSP  233 (241)
Q Consensus       155 s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p  233 (241)
                      |||+++|+|++ |+.||.....         .+...... .+....     ....        .+..+.+++.+||+.||
T Consensus       198 slG~il~ellt~g~~p~~~~~~---------~~~~~~i~-~~~~~~-----~~~~--------~~~~l~~li~~~l~~~p  254 (287)
T 1u59_A          198 SYGVTMWEALSYGQKPYKKMKG---------PEVMAFIE-QGKRME-----CPPE--------CPPELYALMSDCWIYKW  254 (287)
T ss_dssp             HHHHHHHHHHTTSCCTTTTCCT---------HHHHHHHH-TTCCCC-----CCTT--------CCHHHHHHHHHTTCSSG
T ss_pred             HHHHHHHHHHcCCCCCcccCCH---------HHHHHHHh-cCCcCC-----CCCC--------cCHHHHHHHHHHcCCCh
Confidence            99999999998 9999965211         12222221 111111     1112        22678999999999999


Q ss_pred             CCCCCCCC
Q 044022          234 EDRPTMVD  241 (241)
Q Consensus       234 ~~Rpt~~e  241 (241)
                      ++|||+.|
T Consensus       255 ~~Rps~~~  262 (287)
T 1u59_A          255 EDRPDFLT  262 (287)
T ss_dssp             GGSCCHHH
T ss_pred             hhCcCHHH
Confidence            99999753

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=100.00  E-value=1.6e-39  Score=259.73  Aligned_cols=205  Identities=22%  Similarity=0.338  Sum_probs=161.3

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ...+.+.+|++++++++||||+++++++...+..++||||+++++|.+.+....    .....++.+++.||.|||   +
T Consensus        47 ~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~  123 (284)
T 3kk8_A           47 RDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCH---S  123 (284)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---H
T ss_pred             HHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            445778899999999999999999999999999999999999999988875432    246789999999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCC---eEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHH
Q 044022           87 RPIVLRNFKTQNILFNEENV---AKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL  163 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~---~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~  163 (241)
                      .+++||||||+||+++.++.   ++|+|||.+.........   ....+++.|+|||.+.+..++.++||||||+++|+|
T Consensus       124 ~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l  200 (284)
T 3kk8_A          124 NGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAW---HGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYIL  200 (284)
T ss_dssp             TTEECSCCCGGGEEESSSSTTCCEEECCCTTCEECCSSCBC---CCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHH
T ss_pred             CCcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEcccCccc---cCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHH
Confidence            99999999999999976655   999999999776543321   234689999999999998999999999999999999


Q ss_pred             HhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          164 LAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       164 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ++|..||....         ..+...... .+.. ..+.+.. .        ..++.+.+++.+||+.||++|||++|
T Consensus       201 ~~g~~pf~~~~---------~~~~~~~~~-~~~~-~~~~~~~-~--------~~~~~~~~li~~~l~~dp~~Rps~~~  258 (284)
T 3kk8_A          201 LVGYPPFWDED---------QHRLYAQIK-AGAY-DYPSPEW-D--------TVTPEAKSLIDSMLTVNPKKRITADQ  258 (284)
T ss_dssp             HHSSCSSCCSS---------HHHHHHHHH-HTCC-CCCTTTT-T--------TSCHHHHHHHHHHSCSSTTTSCCHHH
T ss_pred             HHCCCCCCCCc---------hhHHHHHHH-hccc-cCCchhh-c--------ccCHHHHHHHHHHcccChhhCCCHHH
Confidence            99999995521         111122211 1111 1111110 1        12257889999999999999999853

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=100.00  E-value=7.1e-40  Score=270.57  Aligned_cols=206  Identities=20%  Similarity=0.234  Sum_probs=151.4

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ..+.+.+|+.++++++||||+++++++...+..++||||+++|+|.+++....    .....++.|++.||.|||   ++
T Consensus        59 ~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~ql~~~L~~LH---~~  135 (361)
T 3uc3_A           59 IDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIMEYASGGELYERICNAGRFSEDEARFFFQQLLSGVSYCH---SM  135 (361)
T ss_dssp             SCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---HT
T ss_pred             ccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEEeCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HC
Confidence            34678899999999999999999999999999999999999999999885432    256789999999999999   89


Q ss_pred             CceeccCCCCCeeecCCCC--eEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcc-hhhHHHHHHHHHHH
Q 044022           88 PIVLRNFKTQNILFNEENV--AKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEK-SNVFSFGAFLFELL  164 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~--~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~-~Di~s~G~~~~~~~  164 (241)
                      +++||||||+||+++.++.  +||+|||++........   .....||+.|+|||++.+..++.+ +||||||+++|+|+
T Consensus       136 ~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell  212 (361)
T 3uc3_A          136 QICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQ---PKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVML  212 (361)
T ss_dssp             TCCSCCCCGGGEEECSSSSCCEEECCCCCC------------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             CcccCCCCHHHEEEcCCCCceEEEeecCccccccccCC---CCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHH
Confidence            9999999999999987765  99999999874332221   233468999999999988777655 89999999999999


Q ss_pred             hcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          165 AGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       165 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +|+.||......     ...............  ..+..   .        ..+..+.+|+.+||+.||++|||++|
T Consensus       213 ~g~~Pf~~~~~~-----~~~~~~~~~~~~~~~--~~~~~---~--------~~s~~~~~li~~~L~~dP~~Rps~~e  271 (361)
T 3uc3_A          213 VGAYPFEDPEEP-----RDYRKTIQRILSVKY--SIPDD---I--------RISPECCHLISRIFVADPATRISIPE  271 (361)
T ss_dssp             HSSCSCC----C-----CCHHHHHHHHHTTCC--CCCTT---S--------CCCHHHHHHHHHHSCSCTTTSCCHHH
T ss_pred             hCCCCCCCCccH-----HHHHHHHHHHhcCCC--CCCCc---C--------CCCHHHHHHHHHHccCChhHCcCHHH
Confidence            999999652211     112222222211110  11110   0        11257889999999999999999853

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=100.00  E-value=3.1e-39  Score=259.25  Aligned_cols=166  Identities=17%  Similarity=0.200  Sum_probs=136.0

Q ss_pred             Cccccccc-ccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcC-CC----chHHHHHHHH
Q 044022            1 MKFYGHEY-HRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFG-AP----LPRLKIASDI   74 (241)
Q Consensus         1 iK~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~-~~----~~~~~~~~~i   74 (241)
                      ||++.... .......+.+|++++++++||||+++++++..++..++||||+.+ +|.+.+.. ..    .....++.|+
T Consensus        32 vK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~l~~~~~~~~~~ql  110 (292)
T 3o0g_A           32 LKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQ-DLKKYFDSCNGDLDPEIVKSFLFQL  110 (292)
T ss_dssp             EEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCSE-EHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred             EEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEecCCC-CHHHHHHhCCCCCCHHHHHHHHHHH
Confidence            35554333 223457789999999999999999999999999999999999975 66555433 21    2467899999


Q ss_pred             HHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccC-CCcchhh
Q 044022           75 VNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICV-LNEKSNV  153 (241)
Q Consensus        75 ~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~-~~~~~Di  153 (241)
                      +.||.|||   +.+++||||||+||+++.++.+||+|||.+.........  .....+|+.|+|||++.+.. ++.++||
T Consensus       111 ~~~l~~lH---~~~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~--~~~~~~t~~y~aPE~~~~~~~~~~~~Di  185 (292)
T 3o0g_A          111 LKGLGFCH---SRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRC--YSAEVVTLWYRPPDVLFGAKLYSTSIDM  185 (292)
T ss_dssp             HHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCSCCSC--CCSCCSCGGGCCHHHHTTCSCCCTHHHH
T ss_pred             HHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEeecccceecCCcccc--ccCCccccCCcChHHHcCCCCcCchHHH
Confidence            99999999   899999999999999999999999999999876533221  13346789999999998765 7999999


Q ss_pred             HHHHHHHHHHHhcCccccc
Q 044022          154 FSFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       154 ~s~G~~~~~~~~g~~p~~~  172 (241)
                      ||||+++|+|++|..||..
T Consensus       186 wslG~il~~l~~~~~p~~~  204 (292)
T 3o0g_A          186 WSAGCIFAELANAGRPLFP  204 (292)
T ss_dssp             HHHHHHHHHHTTTSCCSCC
T ss_pred             HHHHHHHHHHHHcCCCCcC
Confidence            9999999999999888644

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=100.00  E-value=2.3e-39  Score=260.74  Aligned_cols=218  Identities=23%  Similarity=0.330  Sum_probs=160.4

Q ss_pred             cHHHHHHHHHHHHh--cCCCcccceeeeeeeC----CcceEEEEecCCCCHHHhhcCCCc---hHHHHHHHHHHHhchhh
Q 044022           12 TYGSCINNITYAAQ--MSHNHILKRIGCCLQT----PIPILVFQSVEYGTLRDCIFGAPL---PRLKIASDIVNSLAYLH   82 (241)
Q Consensus        12 ~~~~~~~e~~~l~~--l~h~~iv~~~~~~~~~----~~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~i~~~l~~lh   82 (241)
                      ....+.+|.+++..  ++||||+++++++...    ...++||||+++|+|.++++....   ....++.+++.||.|||
T Consensus        43 ~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH  122 (301)
T 3q4u_A           43 DEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQLTTLDTVSCLRIVLSIASGLAHLH  122 (301)
T ss_dssp             GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEEEEECCCTTCBHHHHHTTCCBCHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeEEehhhccCCCHHHHHhhcccCHHHHHHHHHHHHHHHHHHH
Confidence            45667778887777  7999999999987653    458999999999999999976644   46789999999999999


Q ss_pred             cCC-----CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcce--eecccccCCCccCccccccc------CCCc
Q 044022           83 FGF-----PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHI--TTDRVIGTRGYSAPEYISIC------VLNE  149 (241)
Q Consensus        83 ~~~-----~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~--~~~~~~~~~~~~aPE~~~~~------~~~~  149 (241)
                      ...     +.+++||||||+|||++.++.+||+|||++..........  ......||+.|+|||++.+.      .++.
T Consensus       123 ~~~~~~~~~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~  202 (301)
T 3q4u_A          123 IEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYK  202 (301)
T ss_dssp             SCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHH
T ss_pred             HhhhhccCCCCeecCCCChHhEEEcCCCCEEEeeCCCeeecccccccccccccccccccceeChhhhcCcCCCCcccCCc
Confidence            322     5689999999999999999999999999997654433221  12334789999999999876      4557


Q ss_pred             chhhHHHHHHHHHHHhc----------CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHH
Q 044022          150 KSNVFSFGAFLFELLAG----------RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLH  219 (241)
Q Consensus       150 ~~Di~s~G~~~~~~~~g----------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (241)
                      ++||||||+++|+|++|          ..||.......    ...................+.        .......+.
T Consensus       203 ~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~  270 (301)
T 3q4u_A          203 RVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPND----PSFEDMRKVVCVDQQRPNIPN--------RWFSDPTLT  270 (301)
T ss_dssp             HHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSS----CCHHHHHHHHTTSCCCCCCCG--------GGGGSHHHH
T ss_pred             hhhHHHHHHHHHHHHhhhcCccccccccccccccCCCC----cchhhhhHHHhccCCCCCCCh--------hhccCccHH
Confidence            99999999999999999          77775432211    111222222111111111111        111235667


Q ss_pred             HHHHHHHHhccCCCCCCCCCCC
Q 044022          220 ASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       220 ~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      .+.+++.+||+.||++|||++|
T Consensus       271 ~l~~li~~cl~~dP~~Rps~~~  292 (301)
T 3q4u_A          271 SLAKLMKECWYQNPSARLTALR  292 (301)
T ss_dssp             HHHHHHHHHCCSSGGGSCCHHH
T ss_pred             HHHHHHHHHhhcChhhCCCHHH
Confidence            8999999999999999999853

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=100.00  E-value=3.9e-39  Score=265.14  Aligned_cols=200  Identities=20%  Similarity=0.235  Sum_probs=161.6

Q ss_pred             ccHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCC
Q 044022           11 HTYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ...+.+.+|.+++..+ +||||+++++++...+..++||||+++|+|.+++....    .....++.+|+.||.|||   
T Consensus        62 ~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH---  138 (353)
T 2i0e_A           62 DDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQ---  138 (353)
T ss_dssp             TCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---
T ss_pred             hHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            4567788999999988 89999999999999999999999999999999986532    256789999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~  165 (241)
                      +.+|+||||||+|||++.++.+||+|||++........  ......||+.|+|||++.+..++.++|+||||+++|+|++
T Consensus       139 ~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~  216 (353)
T 2i0e_A          139 SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGV--TTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLA  216 (353)
T ss_dssp             HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTC--CBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHH
T ss_pred             HCCEEeccCCHHHEEEcCCCcEEEEeCCcccccccCCc--ccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHc
Confidence            89999999999999999999999999999975432221  1234578999999999998899999999999999999999


Q ss_pred             cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCC
Q 044022          166 GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM  239 (241)
Q Consensus       166 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~  239 (241)
                      |+.||...         ...+......... . .     ....        .+..+.+++.+||..||++||++
T Consensus       217 G~~Pf~~~---------~~~~~~~~i~~~~-~-~-----~p~~--------~s~~~~~li~~lL~~dP~~R~~~  266 (353)
T 2i0e_A          217 GQAPFEGE---------DEDELFQSIMEHN-V-A-----YPKS--------MSKEAVAICKGLMTKHPGKRLGC  266 (353)
T ss_dssp             SSCSSCCS---------SHHHHHHHHHHCC-C-C-----CCTT--------SCHHHHHHHHHHTCSCTTSCTTC
T ss_pred             CCCCCCCC---------CHHHHHHHHHhCC-C-C-----CCCC--------CCHHHHHHHHHHhhcCHHHcCCC
Confidence            99999642         1122222222211 1 1     1111        22578899999999999999976

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=100.00  E-value=4.8e-40  Score=279.33  Aligned_cols=202  Identities=21%  Similarity=0.324  Sum_probs=159.9

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC------chHHHHHHHHHHHhchhhcC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP------LPRLKIASDIVNSLAYLHFG   84 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~------~~~~~~~~~i~~~l~~lh~~   84 (241)
                      ...+.|.+|++++++++||||+++++++. .+..++||||+++|+|.+++....      ...+.++.|++.||.|||  
T Consensus       225 ~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH--  301 (454)
T 1qcf_A          225 MSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIE--  301 (454)
T ss_dssp             BCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEECCCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHH--
T ss_pred             ccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH--
Confidence            35788999999999999999999999986 567899999999999999997531      146789999999999999  


Q ss_pred             CCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHH
Q 044022           85 FPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        85 ~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~  164 (241)
                       +++++||||||+|||++.++.+||+|||++........ .......++..|+|||++....++.++||||||+++|+|+
T Consensus       302 -~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~  379 (454)
T 1qcf_A          302 -QRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEY-TAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIV  379 (454)
T ss_dssp             -HTTCCCSSCSGGGEEECTTCCEEECSTTGGGGBCCHHH-HTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             -hCCccCCCCCHHHEEECCCCcEEEeeCCCceEcCCCce-eccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHH
Confidence             89999999999999999999999999999976543211 1112234577899999999889999999999999999999


Q ss_pred             h-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          165 A-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       165 ~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                      + |+.||....         ..+...... .+.....+     .        ..++.+.+++.+||+.||++|||++
T Consensus       380 t~g~~P~~~~~---------~~~~~~~i~-~~~~~~~~-----~--------~~~~~l~~li~~cl~~dp~~RPt~~  433 (454)
T 1qcf_A          380 TYGRIPYPGMS---------NPEVIRALE-RGYRMPRP-----E--------NCPEELYNIMMRCWKNRPEERPTFE  433 (454)
T ss_dssp             TTSCCSSTTCC---------HHHHHHHHH-HTCCCCCC-----T--------TSCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             hCCCCCCCCCC---------HHHHHHHHH-cCCCCCCC-----C--------CCCHHHHHHHHHHccCChhHCcCHH
Confidence            9 999995421         122222222 12111111     1        2236789999999999999999975

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=100.00  E-value=3.2e-39  Score=258.44  Aligned_cols=213  Identities=21%  Similarity=0.289  Sum_probs=159.6

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC-----C---chHHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA-----P---LPRLKIAS   72 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~-----~---~~~~~~~~   72 (241)
                      ||.+..+......+.+.+|++++++++||||+++++++...+..++||||+++++|.+++...     .   .....++.
T Consensus        52 iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~  131 (285)
T 3is5_A           52 IKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVMETCEGGELLERIVSAQARGKALSEGYVAELMK  131 (285)
T ss_dssp             EEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred             EEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEEeCCCCcHHHHHHhhhhcccCCCHHHHHHHHH
Confidence            355555555556788999999999999999999999999999999999999999999987432     1   14678999


Q ss_pred             HHHHHhchhhcCCCCCceeccCCCCCeee---cCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCc
Q 044022           73 DIVNSLAYLHFGFPRPIVLRNFKTQNILF---NEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNE  149 (241)
Q Consensus        73 ~i~~~l~~lh~~~~~~ivh~dl~~~nil~---~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~  149 (241)
                      +++.||.|||   +.+++||||||+||++   +.++.++|+|||.+........   .....+++.|+|||.+. ..++.
T Consensus       132 qi~~~L~~LH---~~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~~~~~---~~~~~~t~~y~aPE~~~-~~~~~  204 (285)
T 3is5_A          132 QMMNALAYFH---SQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDEH---STNAAGTALYMAPEVFK-RDVTF  204 (285)
T ss_dssp             HHHHHHHHHH---HTTCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC-------------CTTGGGCCHHHHT-TCCCH
T ss_pred             HHHHHHHHHH---hCCEEECCCCHHHEEEecCCCCCCEEEEeeecceecCCccc---CcCcccccCcCChHHhc-cCCCc
Confidence            9999999999   8999999999999999   4567899999999976543322   23346899999999886 56789


Q ss_pred             chhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhc
Q 044022          150 KSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECV  229 (241)
Q Consensus       150 ~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl  229 (241)
                      ++||||||+++|+|++|+.||....         ..+.............    .....        .++.+.+++.+||
T Consensus       205 ~~Di~slG~il~~ll~g~~pf~~~~---------~~~~~~~~~~~~~~~~----~~~~~--------~~~~~~~li~~~L  263 (285)
T 3is5_A          205 KCDIWSAGVVMYFLLTGCLPFTGTS---------LEEVQQKATYKEPNYA----VECRP--------LTPQAVDLLKQML  263 (285)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSSCCSS---------HHHHHHHHHHCCCCCC----C--CC--------CCHHHHHHHHHHT
T ss_pred             ccCeehHHHHHHHHHhCCCCCCCCC---------HHHHHhhhccCCcccc----cccCc--------CCHHHHHHHHHHc
Confidence            9999999999999999999995421         1111111111110000    00001        1256889999999


Q ss_pred             cCCCCCCCCCCC
Q 044022          230 NNSPEDRPTMVD  241 (241)
Q Consensus       230 ~~~p~~Rpt~~e  241 (241)
                      +.||++|||++|
T Consensus       264 ~~dP~~Rps~~e  275 (285)
T 3is5_A          264 TKDPERRPSAAQ  275 (285)
T ss_dssp             CSCTTTSCCHHH
T ss_pred             cCChhhCcCHHH
Confidence            999999999854

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=100.00  E-value=2.7e-39  Score=258.86  Aligned_cols=198  Identities=22%  Similarity=0.333  Sum_probs=153.6

Q ss_pred             HHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc-----hHHHHHHHHHHHhchhhcCCCCC
Q 044022           14 GSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL-----PRLKIASDIVNSLAYLHFGFPRP   88 (241)
Q Consensus        14 ~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-----~~~~~~~~i~~~l~~lh~~~~~~   88 (241)
                      +.+.+|++++++++||||+++++++....  ++||||+++++|.+++.....     ....++.+++.||.|||   +.+
T Consensus        68 ~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~  142 (287)
T 4f0f_A           68 QEFQREVFIMSNLNHPNIVKLYGLMHNPP--RMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQ---NQN  142 (287)
T ss_dssp             HHHHHHHHHHTTCCCTTBCCEEEEETTTT--EEEEECCTTCBHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHH---TSS
T ss_pred             HHHHHHHHHHHhCCCCCchhhheeecCCC--eEEEEecCCCCHHHHHhcccCCccHHHHHHHHHHHHHHHHHHH---hCC
Confidence            78999999999999999999999986554  799999999999988854421     46789999999999999   888


Q ss_pred             --ceeccCCCCCeeecCCCC-----eEEeeccCceecCCCCcceeecccccCCCccCccccc--ccCCCcchhhHHHHHH
Q 044022           89 --IVLRNFKTQNILFNEENV-----AKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYIS--ICVLNEKSNVFSFGAF  159 (241)
Q Consensus        89 --ivh~dl~~~nil~~~~~~-----~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~--~~~~~~~~Di~s~G~~  159 (241)
                        ++|+||||+||+++.++.     ++|+|||.+......     .....+++.|+|||++.  ...++.++||||||++
T Consensus       143 ~~ivH~dikp~Nil~~~~~~~~~~~~kl~Dfg~~~~~~~~-----~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~  217 (287)
T 4f0f_A          143 PPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQSVHS-----VSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMI  217 (287)
T ss_dssp             SCCBCSCCSGGGEEESCCCTTCSCCEEECCCTTCBCCSSC-----EECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHH
T ss_pred             CCeecCCCCcceEEEeccCCCCceeEEeCCCCcccccccc-----ccccCCCccccCchhhccCCCCcCchhhHHHHHHH
Confidence              999999999999988776     999999998754332     23356899999999984  4567889999999999


Q ss_pred             HHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCC
Q 044022          160 LFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM  239 (241)
Q Consensus       160 ~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~  239 (241)
                      +|+|++|+.||......       ..............     +.....        .++.+.+++.+||+.||++|||+
T Consensus       218 l~~l~~g~~pf~~~~~~-------~~~~~~~~~~~~~~-----~~~~~~--------~~~~l~~li~~~l~~dp~~Rps~  277 (287)
T 4f0f_A          218 LYTILTGEGPFDEYSYG-------KIKFINMIREEGLR-----PTIPED--------CPPRLRNVIELCWSGDPKKRPHF  277 (287)
T ss_dssp             HHHHHHSSCTTTTCCCC-------HHHHHHHHHHSCCC-----CCCCTT--------SCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             HHHHHcCCCCCcccccc-------HHHHHHHHhccCCC-----CCCCcc--------cCHHHHHHHHHHhcCChhhCcCH
Confidence            99999999999652111       11111111111111     111122        22578999999999999999998


Q ss_pred             CC
Q 044022          240 VD  241 (241)
Q Consensus       240 ~e  241 (241)
                      +|
T Consensus       278 ~~  279 (287)
T 4f0f_A          278 SY  279 (287)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=100.00  E-value=1.3e-39  Score=261.08  Aligned_cols=209  Identities=21%  Similarity=0.333  Sum_probs=151.5

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc-----hHHHHHHHHHHHhchhhcCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL-----PRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-----~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ...+.|.+|++++++++||||+++++++ ..+..++||||+++++|.+++.....     ....++.+++.||.|||   
T Consensus        62 ~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~lH---  137 (289)
T 3og7_A           62 QQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLH---  137 (289)
T ss_dssp             HHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSCEEEEECCCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCccEEEEEecCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            4567799999999999999999999965 55668999999999999999865422     46789999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccc---ccCCCcchhhHHHHHHHHH
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYIS---ICVLNEKSNVFSFGAFLFE  162 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~---~~~~~~~~Di~s~G~~~~~  162 (241)
                      +.+++||||||+||+++.++.++|+|||.+................|++.|+|||.+.   +..++.++||||||+++|+
T Consensus       138 ~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~e  217 (289)
T 3og7_A          138 AKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYE  217 (289)
T ss_dssp             HTTCCCSCCCGGGEEEETTTEEEECCCC------------------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHH
T ss_pred             hCCcccccCccceEEECCCCCEEEccceeccccccccccccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHH
Confidence            8999999999999999999999999999987654332222223456899999999986   5677889999999999999


Q ss_pred             HHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          163 LLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       163 ~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      |++|+.||.....         .+........+...... .....        ..+..+.+++.+||+.||++|||++|
T Consensus       218 l~~g~~p~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~--------~~~~~l~~li~~~l~~~p~~Rps~~e  278 (289)
T 3og7_A          218 LMTGQLPYSNINN---------RDQIIEMVGRGSLSPDL-SKVRS--------NCPKRMKRLMAECLKKKRDERPSFPR  278 (289)
T ss_dssp             HHHSSCTTSSCCC---------HHHHHHHHHHTSCCCCT-TSSCT--------TSCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             HHHCCCCccccch---------HHHHHHHhcccccCcch-hhccc--------cCCHHHHHHHHHHccCChhhCCCHHH
Confidence            9999999965211         11122222222211111 11111        22367899999999999999999753

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=100.00  E-value=4e-40  Score=262.99  Aligned_cols=212  Identities=20%  Similarity=0.274  Sum_probs=160.5

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC--c---hHHHHHHHHHH
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP--L---PRLKIASDIVN   76 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~--~---~~~~~~~~i~~   76 (241)
                      |.+.........+++.+|+.++++++||||+++++++.. +..++||||+++++|.+++....  .   ....++.+++.
T Consensus        46 K~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~  124 (281)
T 3cc6_A           46 KTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE-EPTWIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICK  124 (281)
T ss_dssp             EECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-SSCEEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred             EecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CCCEEEEecCCCCCHHHHHHhccccCCHHHHHHHHHHHHH
Confidence            455444444567789999999999999999999999865 45789999999999999986432  1   46788999999


Q ss_pred             HhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHH
Q 044022           77 SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSF  156 (241)
Q Consensus        77 ~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~  156 (241)
                      ||.|||   +.+++|+||||+||+++.++.++|+|||.+......... ......+++.|+|||.+.+..++.++|||||
T Consensus       125 ~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~sl  200 (281)
T 3cc6_A          125 AMAYLE---SINCVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYY-KASVTRLPIKWMSPESINFRRFTTASDVWMF  200 (281)
T ss_dssp             HHHHHH---HTTCCCCCCSGGGEEEEETTEEEECCCCGGGCC----------CCCCCGGGCCHHHHHHCCCCHHHHHHHH
T ss_pred             HHHHHH---HCCcccCCCccceEEECCCCcEEeCccCCCccccccccc-ccccCCCCcceeCchhhccCCCCchhccHHH
Confidence            999999   899999999999999999999999999998765443221 1123456778999999998899999999999


Q ss_pred             HHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCC
Q 044022          157 GAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPED  235 (241)
Q Consensus       157 G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~  235 (241)
                      |+++|+|++ |+.||......         +....... ......+     .        ..++.+.+++.+||+.||++
T Consensus       201 G~il~~llt~g~~p~~~~~~~---------~~~~~~~~-~~~~~~~-----~--------~~~~~l~~li~~~l~~~p~~  257 (281)
T 3cc6_A          201 AVCMWEILSFGKQPFFWLENK---------DVIGVLEK-GDRLPKP-----D--------LCPPVLYTLMTRCWDYDPSD  257 (281)
T ss_dssp             HHHHHHHHTTTCCTTTTSCGG---------GHHHHHHH-TCCCCCC-----T--------TCCHHHHHHHHHHTCSSGGG
T ss_pred             HHHHHHHHhCCCCCcccCChH---------HHHHHHhc-CCCCCCC-----C--------CCCHHHHHHHHHHccCCchh
Confidence            999999998 99999642211         11111111 1111111     1        12257889999999999999


Q ss_pred             CCCCCC
Q 044022          236 RPTMVD  241 (241)
Q Consensus       236 Rpt~~e  241 (241)
                      |||++|
T Consensus       258 Rps~~e  263 (281)
T 3cc6_A          258 RPRFTE  263 (281)
T ss_dssp             SCCHHH
T ss_pred             CcCHHH
Confidence            999753

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=100.00  E-value=2.5e-39  Score=259.34  Aligned_cols=156  Identities=22%  Similarity=0.293  Sum_probs=131.6

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHHHhchhhcCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ...+.+.+|++++++++||||+++++++...+..++||||+. ++|.+++....     .....++.|++.||.|||   
T Consensus        42 ~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---  117 (288)
T 1ob3_A           42 GIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEHLD-QDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCH---  117 (288)
T ss_dssp             CCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEECCS-EEHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHH---
T ss_pred             ccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEecC-CCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---
Confidence            345778899999999999999999999999999999999997 59998886532     146789999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc-CCCcchhhHHHHHHHHHHH
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-VLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~~~~~~  164 (241)
                      +.+++||||||+||+++.++.+||+|||.+.........  .....+|+.|+|||++.+. .++.++||||||+++|+|+
T Consensus       118 ~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~--~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~  195 (288)
T 1ob3_A          118 DRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRK--YTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMV  195 (288)
T ss_dssp             HTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC-----------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHH
T ss_pred             HCCeecCCCCHHHEEEcCCCCEEEeECccccccCccccc--cccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999998765432211  1234679999999998764 5899999999999999999


Q ss_pred             hcCccccc
Q 044022          165 AGRIHIWD  172 (241)
Q Consensus       165 ~g~~p~~~  172 (241)
                      +|+.||..
T Consensus       196 ~g~~pf~~  203 (288)
T 1ob3_A          196 NGTPLFPG  203 (288)
T ss_dssp             HSSCSCCC
T ss_pred             hCCCCCCC
Confidence            99999965

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.9e-39  Score=260.62  Aligned_cols=202  Identities=23%  Similarity=0.361  Sum_probs=151.7

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc-------hHHHHHHHHHHHhchhhcC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL-------PRLKIASDIVNSLAYLHFG   84 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-------~~~~~~~~i~~~l~~lh~~   84 (241)
                      ..+.|.+|++++++++||||+++++++.  +..++||||+++++|.+++.....       ..+.++.+++.||.|||+.
T Consensus        44 ~~~~~~~E~~~l~~l~hp~iv~~~~~~~--~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~  121 (307)
T 2eva_A           44 ERKAFIVELRQLSRVNHPNIVKLYGACL--NPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSM  121 (307)
T ss_dssp             HHHHHHHHHHHHHHCCCTTBCCEEEBCT--TTTEEEEECCTTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhcCCCCCcCeEEEEEc--CCcEEEEEcCCCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhC
Confidence            4577999999999999999999999986  458999999999999999976531       4578899999999999932


Q ss_pred             CCCCceeccCCCCCeeecCCCC-eEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHH
Q 044022           85 FPRPIVLRNFKTQNILFNEENV-AKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL  163 (241)
Q Consensus        85 ~~~~ivh~dl~~~nil~~~~~~-~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~  163 (241)
                      ..++++||||||+||+++.++. +||+|||.+.......     ....|++.|+|||++.+..++.++||||||+++|+|
T Consensus       122 ~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el  196 (307)
T 2eva_A          122 QPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHM-----TNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEV  196 (307)
T ss_dssp             SSSCCCCCCCSGGGEEEETTTTEEEECCCCC-----------------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHH
T ss_pred             CCCCeecCCCChhHEEEeCCCCEEEEccccccccccccc-----ccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHH
Confidence            2289999999999999998886 7999999987544321     233589999999999988999999999999999999


Q ss_pred             HhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          164 LAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       164 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ++|+.||......       .......... +..     +......        +..+.+++.+||+.||++|||++|
T Consensus       197 ~~g~~p~~~~~~~-------~~~~~~~~~~-~~~-----~~~~~~~--------~~~l~~li~~~l~~dp~~Rps~~e  253 (307)
T 2eva_A          197 ITRRKPFDEIGGP-------AFRIMWAVHN-GTR-----PPLIKNL--------PKPIESLMTRCWSKDPSQRPSMEE  253 (307)
T ss_dssp             HHTCCTTTTTCSS-------HHHHHHHHHT-TCC-----CCCBTTC--------CHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             HHCCCCchhhCcc-------HHHHHHHHhc-CCC-----CCccccc--------CHHHHHHHHHHhcCChhhCcCHHH
Confidence            9999999642111       1111111111 111     1111222        256889999999999999999753

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=100.00  E-value=1.9e-39  Score=273.61  Aligned_cols=207  Identities=17%  Similarity=0.173  Sum_probs=162.0

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC--Cc---hHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA--PL---PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~--~~---~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ....+.+|+.++..++||||++++++|...+..++||||+++|+|.+++...  ..   ....++.+++.||.|||   +
T Consensus       117 ~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~~~lV~Ey~~gg~L~~~l~~~~~~l~e~~~~~~~~qi~~aL~~LH---~  193 (437)
T 4aw2_A          117 ETACFREERDVLVNGDSKWITTLHYAFQDDNNLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVH---Q  193 (437)
T ss_dssp             TTCCHHHHHHHHHHSCTTTBCCEEEEEECSSEEEEEECCCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHH---H
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCEEEEEEecCCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHH---h
Confidence            3445889999999999999999999999999999999999999999999763  22   46778999999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccc-----ccCCCcchhhHHHHHHHH
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYIS-----ICVLNEKSNVFSFGAFLF  161 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~-----~~~~~~~~Di~s~G~~~~  161 (241)
                      .+|+||||||+|||++.++.+||+|||++......... ......||+.|+|||++.     ...++.++||||||+++|
T Consensus       194 ~giiHrDLKp~NILl~~~g~vkL~DFGla~~~~~~~~~-~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~  272 (437)
T 4aw2_A          194 LHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTV-QSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMY  272 (437)
T ss_dssp             TTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTSCE-ECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHH
T ss_pred             CCeEecccCHHHeeEcCCCCEEEcchhhhhhcccCCCc-ccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHH
Confidence            99999999999999999999999999999776544332 223457999999999997     456899999999999999


Q ss_pred             HHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCC--CCCC
Q 044022          162 ELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPED--RPTM  239 (241)
Q Consensus       162 ~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~--Rpt~  239 (241)
                      +|++|+.||...         ...+..............+.  ....        .++.+.+|+.+||..+|++  ||++
T Consensus       273 elltG~~Pf~~~---------~~~~~~~~i~~~~~~~~~p~--~~~~--------~s~~~~dLi~~lL~~~~~r~~r~~~  333 (437)
T 4aw2_A          273 EMLYGETPFYAE---------SLVETYGKIMNHKERFQFPT--QVTD--------VSENAKDLIRRLICSREHRLGQNGI  333 (437)
T ss_dssp             HHHHSSCTTCCS---------SHHHHHHHHHTHHHHCCCCS--SCCC--------SCHHHHHHHHTTSSCGGGCTTTTTT
T ss_pred             HHHhCCCCCCCC---------ChhHHHHhhhhccccccCCc--cccc--------CCHHHHHHHHHHhcccccccCCCCH
Confidence            999999999652         11222222221111111111  1111        2257889999999998888  9987


Q ss_pred             CC
Q 044022          240 VD  241 (241)
Q Consensus       240 ~e  241 (241)
                      +|
T Consensus       334 ~e  335 (437)
T 4aw2_A          334 ED  335 (437)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=100.00  E-value=1e-39  Score=262.65  Aligned_cols=214  Identities=21%  Similarity=0.279  Sum_probs=159.9

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeee-eCCcceEEEEecCCCCHHHhhcCCCc-----hHHHHHHHHH
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCL-QTPIPILVFQSVEYGTLRDCIFGAPL-----PRLKIASDIV   75 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~lv~e~~~~~sL~~~l~~~~~-----~~~~~~~~i~   75 (241)
                      |.+.........+++.+|+.++++++||||+++++++. .++..++||||+++++|.+++.....     ....++.+++
T Consensus        59 k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~ql~  138 (298)
T 3f66_A           59 KSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVA  138 (298)
T ss_dssp             EEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEEEECCTTCBHHHHHHCTTCCCCHHHHHHHHHHHH
T ss_pred             EecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceEEEEeCCCCCCHHHHHHhcccCCCHHHHHHHHHHHH
Confidence            44444334445678999999999999999999999865 45678999999999999999965421     4678899999


Q ss_pred             HHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCc--ceeecccccCCCccCcccccccCCCcchhh
Q 044022           76 NSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGET--HITTDRVIGTRGYSAPEYISICVLNEKSNV  153 (241)
Q Consensus        76 ~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~--~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di  153 (241)
                      .||.|||   +.+++||||||+||+++.++.++|+|||.+........  ........+|+.|+|||.+.+..++.++||
T Consensus       139 ~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di  215 (298)
T 3f66_A          139 KGMKYLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDV  215 (298)
T ss_dssp             HHHHHHH---HTTCCCSCCSGGGEEECTTCCEEECSCGGGCCCSCGGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHH
T ss_pred             HHHHHHH---hCCccCCCCchheEEECCCCCEEECcccccccccccchhccccccCCCCCccccChHHhcCCCCChHHHH
Confidence            9999999   89999999999999999999999999999976543321  112233456788999999998899999999


Q ss_pred             HHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCC
Q 044022          154 FSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNS  232 (241)
Q Consensus       154 ~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~  232 (241)
                      ||||+++|++++ |.+||......         +...... .....     .....        .+..+.+++.+||+.|
T Consensus       216 ~slG~il~~l~~~~~~~~~~~~~~---------~~~~~~~-~~~~~-----~~~~~--------~~~~l~~li~~~l~~~  272 (298)
T 3f66_A          216 WSFGVLLWELMTRGAPPYPDVNTF---------DITVYLL-QGRRL-----LQPEY--------CPDPLYEVMLKCWHPK  272 (298)
T ss_dssp             HHHHHHHHHHHTTSCCSSTTSCTT---------THHHHHH-TTCCC-----CCCTT--------CCHHHHHHHHHHTCSS
T ss_pred             HHHHHHHHHHHhCCCCCCccCCHH---------HHHHHHh-cCCCC-----CCCcc--------CCHHHHHHHHHHcCCC
Confidence            999999999999 55565432111         1111111 11110     01111        1256889999999999


Q ss_pred             CCCCCCCCC
Q 044022          233 PEDRPTMVD  241 (241)
Q Consensus       233 p~~Rpt~~e  241 (241)
                      |++|||++|
T Consensus       273 p~~Rps~~e  281 (298)
T 3f66_A          273 AEMRPSFSE  281 (298)
T ss_dssp             GGGSCCHHH
T ss_pred             hhhCcCHHH
Confidence            999999753

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=100.00  E-value=8.4e-40  Score=259.36  Aligned_cols=208  Identities=19%  Similarity=0.273  Sum_probs=161.1

Q ss_pred             ccccccc-ccccHHHHHHHHHHHHhcCCCcccceeeeeeeC--CcceEEEEecCCCCHHHhhcCCCc------hHHHHHH
Q 044022            2 KFYGHEY-HRHTYGSCINNITYAAQMSHNHILKRIGCCLQT--PIPILVFQSVEYGTLRDCIFGAPL------PRLKIAS   72 (241)
Q Consensus         2 K~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~--~~~~lv~e~~~~~sL~~~l~~~~~------~~~~~~~   72 (241)
                      |++.... .....+.|.+|+.++++++||||+++++++...  +..++||||+++|+|.+++.....      .+..++.
T Consensus        39 K~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~  118 (271)
T 3kmu_A           39 KVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFAL  118 (271)
T ss_dssp             EEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEEEECCTTCBHHHHHHSCSSCCCCHHHHHHHHH
T ss_pred             EEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEeeecccCCCcHHHHHhhcccCCCCHHHHHHHHH
Confidence            4554332 234567799999999999999999999999876  788999999999999999976531      4678999


Q ss_pred             HHHHHhchhhcCCCCC--ceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCc-
Q 044022           73 DIVNSLAYLHFGFPRP--IVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNE-  149 (241)
Q Consensus        73 ~i~~~l~~lh~~~~~~--ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~-  149 (241)
                      +++.||.|||   +.+  ++|+||||+||+++.++.++++|||++.....       ....+|+.|+|||.+.+...+. 
T Consensus       119 qi~~~l~~lH---~~~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~~~-------~~~~~t~~y~aPE~~~~~~~~~~  188 (271)
T 3kmu_A          119 DMARGMAFLH---TLEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQS-------PGRMYAPAWVAPEALQKKPEDTN  188 (271)
T ss_dssp             HHHHHHHHHT---TSSSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTTSC-------TTCBSCGGGSCHHHHHSCGGGSC
T ss_pred             HHHHHHHHHh---cCCCceecCCCccceEEEcCCcceeEEeccceeeecc-------cCccCCccccChhhhccCCCCCC
Confidence            9999999999   888  99999999999999999999999888754322       2246789999999998765444 


Q ss_pred             --chhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHH
Q 044022          150 --KSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLE  227 (241)
Q Consensus       150 --~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  227 (241)
                        ++||||||+++|+|++|+.||....         ..+............     .....        .+..+.+++.+
T Consensus       189 ~~~~Di~slG~il~el~~g~~p~~~~~---------~~~~~~~~~~~~~~~-----~~~~~--------~~~~~~~li~~  246 (271)
T 3kmu_A          189 RRSADMWSFAVLLWELVTREVPFADLS---------NMEIGMKVALEGLRP-----TIPPG--------ISPHVSKLMKI  246 (271)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSCTTTTSC---------HHHHHHHHHHSCCCC-----CCCTT--------CCHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHHHHhCCCCccccC---------hHHHHHHHHhcCCCC-----CCCCC--------CCHHHHHHHHH
Confidence              7999999999999999999996421         112222222222111     11112        22578999999


Q ss_pred             hccCCCCCCCCCCC
Q 044022          228 CVNNSPEDRPTMVD  241 (241)
Q Consensus       228 cl~~~p~~Rpt~~e  241 (241)
                      ||+.||++|||++|
T Consensus       247 ~l~~~p~~Rps~~~  260 (271)
T 3kmu_A          247 CMNEDPAKRPKFDM  260 (271)
T ss_dssp             HTCSSGGGSCCHHH
T ss_pred             HcCCChhhCcCHHH
Confidence            99999999999853

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=100.00  E-value=1.5e-39  Score=267.44  Aligned_cols=204  Identities=24%  Similarity=0.297  Sum_probs=147.6

Q ss_pred             HHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCCCC
Q 044022           13 YGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFPRP   88 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~~~   88 (241)
                      .+.+.+|++++++++||||+++++++...+..++||||+++++|.+++.....    ....++.|++.||.|||   +.+
T Consensus        92 ~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~  168 (349)
T 2w4o_A           92 KKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLELVTGGELFDRIVEKGYYSERDAADAVKQILEAVAYLH---ENG  168 (349)
T ss_dssp             -------CHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHH---HTT
T ss_pred             HHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEEeCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCC
Confidence            45688999999999999999999999999999999999999999999876532    46789999999999999   899


Q ss_pred             ceeccCCCCCeeecC---CCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh
Q 044022           89 IVLRNFKTQNILFNE---ENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        89 ivh~dl~~~nil~~~---~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~  165 (241)
                      ++||||||+||+++.   ++.+||+|||++........   .....||+.|+|||++.+..++.++||||||+++|+|++
T Consensus       169 ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~  245 (349)
T 2w4o_A          169 IVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVL---MKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLC  245 (349)
T ss_dssp             CCCCCCCGGGEEESSSSTTCCEEECCCC-------------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHH
T ss_pred             eEecCCCcccEEEecCCCCCCEEEccCccccccCcccc---cccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHh
Confidence            999999999999975   88999999999876543221   133468999999999998899999999999999999999


Q ss_pred             cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          166 GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       166 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      |..||......        ........... .. ... ....        ..+..+.+|+.+||+.||++|||++|
T Consensus       246 g~~pf~~~~~~--------~~~~~~i~~~~-~~-~~~-~~~~--------~~~~~~~~li~~~L~~dP~~Rpt~~e  302 (349)
T 2w4o_A          246 GFEPFYDERGD--------QFMFRRILNCE-YY-FIS-PWWD--------EVSLNAKDLVRKLIVLDPKKRLTTFQ  302 (349)
T ss_dssp             SSCTTCCTTCH--------HHHHHHHHTTC-CC-CCT-TTTT--------TSCHHHHHHHHTTSCSSGGGSCCHHH
T ss_pred             CCCCCCCCccc--------HHHHHHHHhCC-Cc-cCC-chhh--------hCCHHHHHHHHHHccCChhhCcCHHH
Confidence            99999652111        11111111111 10 011 1111        22357889999999999999999753

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=100.00  E-value=1.1e-39  Score=261.77  Aligned_cols=213  Identities=22%  Similarity=0.296  Sum_probs=162.2

Q ss_pred             cccccccc-cccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHH
Q 044022            2 KFYGHEYH-RHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVN   76 (241)
Q Consensus         2 K~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~   76 (241)
                      |++..... ....+++.+|++++++++||||+++++++ ..+..++||||+++++|.+++.....    ....++.+++.
T Consensus        50 K~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~  128 (291)
T 1xbb_A           50 KILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSM  128 (291)
T ss_dssp             EEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSSEEEEEECCTTEEHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred             EeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCCcEEEEEeCCCCCHHHHHHhCcCCCHHHHHHHHHHHHH
Confidence            44443322 23367899999999999999999999999 66778999999999999999875432    46789999999


Q ss_pred             HhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcce-eecccccCCCccCcccccccCCCcchhhHH
Q 044022           77 SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHI-TTDRVIGTRGYSAPEYISICVLNEKSNVFS  155 (241)
Q Consensus        77 ~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~-~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s  155 (241)
                      ||.|||   +.+++|+||||+||+++.++.++|+|||.+.......... ......+++.|+|||.+.+..++.++||||
T Consensus       129 ~l~~LH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s  205 (291)
T 1xbb_A          129 GMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWS  205 (291)
T ss_dssp             HHHHHH---HTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHH
T ss_pred             HHHHHH---hCCeEcCCCCcceEEEeCCCcEEEccCCcceeeccCCCcccccccCCCCceeeChHHhccCCCChhhhHHH
Confidence            999999   8999999999999999999999999999998765443221 122234568899999998888899999999


Q ss_pred             HHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCC
Q 044022          156 FGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPE  234 (241)
Q Consensus       156 ~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~  234 (241)
                      ||+++|+|++ |..||.....         .+.... ...+....     ...        ..+..+.+++.+||+.||+
T Consensus       206 lG~il~~l~~~g~~p~~~~~~---------~~~~~~-~~~~~~~~-----~~~--------~~~~~l~~li~~~l~~dp~  262 (291)
T 1xbb_A          206 FGVLMWEAFSYGQKPYRGMKG---------SEVTAM-LEKGERMG-----CPA--------GCPREMYDLMNLCWTYDVE  262 (291)
T ss_dssp             HHHHHHHHHTTTCCSSTTCCH---------HHHHHH-HHTTCCCC-----CCT--------TCCHHHHHHHHHHTCSSTT
T ss_pred             HHHHHHHHHhcCCCCCCCCCH---------HHHHHH-HHcCCCCC-----CCC--------CCCHHHHHHHHHHcCCChh
Confidence            9999999999 9999965211         111111 11121111     111        1226789999999999999


Q ss_pred             CCCCCCC
Q 044022          235 DRPTMVD  241 (241)
Q Consensus       235 ~Rpt~~e  241 (241)
                      +|||+.|
T Consensus       263 ~Rps~~~  269 (291)
T 1xbb_A          263 NRPGFAA  269 (291)
T ss_dssp             TSCCHHH
T ss_pred             hCcCHHH
Confidence            9999753

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.5e-39  Score=266.12  Aligned_cols=194  Identities=22%  Similarity=0.271  Sum_probs=159.1

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCC-CHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYG-TLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~-sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ..+.+.+|++++++++||||+++++++...+..++||||+.+| +|.+++.....    .+..++.+++.||.|||   +
T Consensus        72 ~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~~~~~lv~e~~~~g~~l~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH---~  148 (335)
T 3dls_A           72 KLGKVTLEIAILSRVEHANIIKVLDIFENQGFFQLVMEKHGSGLDLFAFIDRHPRLDEPLASYIFRQLVSAVGYLR---L  148 (335)
T ss_dssp             TTEEEEHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTSCBHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHH---H
T ss_pred             HHHHHHHHHHHHHhCCCCCEeeEEEEEeeCCEEEEEEEeCCCCccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---h
Confidence            4456788999999999999999999999999999999998766 99999876532    46789999999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCC-CcchhhHHHHHHHHHHHh
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVL-NEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~-~~~~Di~s~G~~~~~~~~  165 (241)
                      .+++||||||+|||++.++.+||+|||.+.........   ....||+.|+|||++.+..+ +.++||||||+++|+|++
T Consensus       149 ~~ivH~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~  225 (335)
T 3dls_A          149 KDIIHRDIKDENIVIAEDFTIKLIDFGSAAYLERGKLF---YTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVF  225 (335)
T ss_dssp             TTEECSCCSGGGEEECTTSCEEECCCTTCEECCTTCCB---CEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEeccCHHHEEEcCCCcEEEeecccceECCCCCce---eccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHh
Confidence            99999999999999999999999999999876554322   23468999999999988776 789999999999999999


Q ss_pred             cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          166 GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       166 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      |..||.......                ..   ....   ..        ..+..+.+++.+||+.||++|||++|
T Consensus       226 g~~pf~~~~~~~----------------~~---~~~~---~~--------~~~~~l~~li~~~L~~dP~~Rps~~e  271 (335)
T 3dls_A          226 EENPFCELEETV----------------EA---AIHP---PY--------LVSKELMSLVSGLLQPVPERRTTLEK  271 (335)
T ss_dssp             SSCSCSSGGGGT----------------TT---CCCC---SS--------CCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             CCCchhhHHHHH----------------hh---ccCC---Cc--------ccCHHHHHHHHHHccCChhhCcCHHH
Confidence            999996521110                00   0000   00        11257899999999999999999853

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.9e-39  Score=266.33  Aligned_cols=205  Identities=18%  Similarity=0.295  Sum_probs=152.6

Q ss_pred             ccHHHHHHHHHHHHhcCC--CcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcC
Q 044022           11 HTYGSCINNITYAAQMSH--NHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFG   84 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h--~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~   84 (241)
                      ...+.+.+|+.++++++|  +||+++++++...+..++|||+ .+++|.+++.....    .+..++.+++.||.|||  
T Consensus        49 ~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~e~-~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH--  125 (343)
T 3dbq_A           49 QTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVMEC-GNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIH--  125 (343)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECC-CSEEHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEEEeC-CCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH--
Confidence            455788999999999976  9999999999999999999995 57899999865432    56789999999999999  


Q ss_pred             CCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc-----------cCCCcchhh
Q 044022           85 FPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI-----------CVLNEKSNV  153 (241)
Q Consensus        85 ~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-----------~~~~~~~Di  153 (241)
                       +.+++||||||+|||++ ++.+||+|||++................||+.|+|||++.+           ..++.++||
T Consensus       126 -~~~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di  203 (343)
T 3dbq_A          126 -QHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDV  203 (343)
T ss_dssp             -HTTCCCCCCCGGGEEEE-TTEEEECCCSSSCCC------------CCCCSSCCHHHHHHCC-----------CCHHHHH
T ss_pred             -hCCeecCCCCcceEEEE-CCcEEEeecccccccCcccccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhH
Confidence             89999999999999997 67899999999987654433333345579999999999865           568889999


Q ss_pred             HHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCC
Q 044022          154 FSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSP  233 (241)
Q Consensus       154 ~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p  233 (241)
                      ||||+++|+|++|+.||.....       .. .............     ......        +..+.+++.+||+.||
T Consensus       204 wslG~il~ell~g~~pf~~~~~-------~~-~~~~~~~~~~~~~-----~~~~~~--------~~~l~~li~~~L~~dp  262 (343)
T 3dbq_A          204 WSLGCILYYMTYGKTPFQQIIN-------QI-SKLHAIIDPNHEI-----EFPDIP--------EKDLQDVLKCCLKRDP  262 (343)
T ss_dssp             HHHHHHHHHHHHSSCTTTTCCS-------HH-HHHHHHHCTTSCC-----CCCCCS--------CHHHHHHHHHHTCSST
T ss_pred             HHHHHHHHHHHhCCCcchhhhh-------HH-HHHHHHhcCCccc-----CCcccC--------CHHHHHHHHHHcCCCh
Confidence            9999999999999999964211       11 1111111111111     111111        1468899999999999


Q ss_pred             CCCCCCCC
Q 044022          234 EDRPTMVD  241 (241)
Q Consensus       234 ~~Rpt~~e  241 (241)
                      ++|||++|
T Consensus       263 ~~Rpt~~e  270 (343)
T 3dbq_A          263 KQRISIPE  270 (343)
T ss_dssp             TTSCCHHH
T ss_pred             hHCCCHHH
Confidence            99999853

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=100.00  E-value=7.4e-40  Score=277.97  Aligned_cols=201  Identities=23%  Similarity=0.293  Sum_probs=154.9

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC-----C-chHHHHHHHHHHHhchhhcCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA-----P-LPRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~-----~-~~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ..+.|.+|++++++++||||+++++++.. +..++||||+++|+|.+++...     . ...+.++.|++.||.|||   
T Consensus       222 ~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~iv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH---  297 (452)
T 1fmk_A          222 SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE---  297 (452)
T ss_dssp             CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHH---
T ss_pred             CHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEEEehhhcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            46789999999999999999999999876 6789999999999999999742     1 246789999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~  165 (241)
                      +++++||||||+|||++.++.+||+|||++........ .......++..|+|||.+....++.++||||||+++|+|++
T Consensus       298 ~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t  376 (452)
T 1fmk_A          298 RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY-TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTT  376 (452)
T ss_dssp             HTTCCCSCCSGGGEEECGGGCEEECCCCTTC---------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHT
T ss_pred             hCCeeCCCCChhhEEECCCCCEEECCCccceecCCCce-ecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHh
Confidence            89999999999999999999999999999976543221 11122346778999999998899999999999999999999


Q ss_pred             -cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          166 -GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       166 -g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                       |+.||....         ..+...... .+.....     ..        ..++.+.+++.+||+.||++|||++
T Consensus       377 ~g~~P~~~~~---------~~~~~~~i~-~~~~~~~-----~~--------~~~~~l~~li~~cl~~dP~~Rpt~~  429 (452)
T 1fmk_A          377 KGRVPYPGMV---------NREVLDQVE-RGYRMPC-----PP--------ECPESLHDLMCQCWRKEPEERPTFE  429 (452)
T ss_dssp             TTCCSSTTCC---------HHHHHHHHH-TTCCCCC-----CT--------TSCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CCCCCCCCCC---------HHHHHHHHH-cCCCCCC-----CC--------CCCHHHHHHHHHHccCChhhCcCHH
Confidence             999995421         122222221 2211111     11        2236788999999999999999985

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=100.00  E-value=1.3e-40  Score=269.71  Aligned_cols=217  Identities=22%  Similarity=0.288  Sum_probs=157.7

Q ss_pred             Ccccccccc--cccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcc----eEEEEecCCCCHHHhhcCCC----chHHHH
Q 044022            1 MKFYGHEYH--RHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIP----ILVFQSVEYGTLRDCIFGAP----LPRLKI   70 (241)
Q Consensus         1 iK~~~~~~~--~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~----~lv~e~~~~~sL~~~l~~~~----~~~~~~   70 (241)
                      ||++..+..  ......+.+|++++++++||||+++++++......    ++||||+++++|.+++....    .....+
T Consensus        42 vK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~  121 (311)
T 3ork_A           42 VKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEV  121 (311)
T ss_dssp             EEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEEEEEEEECCCEEEHHHHHHHHCSCCHHHHHHH
T ss_pred             EEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcccEEEEecCCCCCHHHHHHhcCCCCHHHHHHH
Confidence            355544332  23456789999999999999999999999876544    99999999999999986432    246789


Q ss_pred             HHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcc-eeecccccCCCccCcccccccCCCc
Q 044022           71 ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH-ITTDRVIGTRGYSAPEYISICVLNE  149 (241)
Q Consensus        71 ~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~-~~~~~~~~~~~~~aPE~~~~~~~~~  149 (241)
                      +.|++.||.|||   +.+++||||||+||+++.++.+||+|||.+......... .......|++.|+|||++.+..++.
T Consensus       122 ~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  198 (311)
T 3ork_A          122 IADACQALNFSH---QNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDA  198 (311)
T ss_dssp             HHHHHHHHHHHH---HTTCCCCCCCGGGEEEETTSCEEECCCSCC------------------CCTTCCHHHHHTCCCCH
T ss_pred             HHHHHHHHHHHH---HCCCCcCCCCHHHEEEcCCCCEEEeeccCcccccccccccccccccCcCcccCCHHHhcCCCCCc
Confidence            999999999999   899999999999999999999999999999765443211 1223356899999999999889999


Q ss_pred             chhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhc
Q 044022          150 KSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECV  229 (241)
Q Consensus       150 ~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl  229 (241)
                      ++||||||+++|+|++|+.||....         ..+..........   ........        ..+..+.+++.+||
T Consensus       199 ~~Di~slG~~l~~ll~g~~pf~~~~---------~~~~~~~~~~~~~---~~~~~~~~--------~~~~~l~~li~~~l  258 (311)
T 3ork_A          199 RSDVYSLGCVLYEVLTGEPPFTGDS---------PVSVAYQHVREDP---IPPSARHE--------GLSADLDAVVLKAL  258 (311)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSCCCSS---------HHHHHHHHHHCCC---CCHHHHST--------TCCHHHHHHHHHHT
T ss_pred             hHhHHHHHHHHHHHHhCCCCCCCCC---------hHHHHHHHhcCCC---CCcccccC--------CCCHHHHHHHHHHH
Confidence            9999999999999999999995421         1111122111111   01000011        12367889999999


Q ss_pred             cCCCCCCCCCC
Q 044022          230 NNSPEDRPTMV  240 (241)
Q Consensus       230 ~~~p~~Rpt~~  240 (241)
                      +.||++||++.
T Consensus       259 ~~dP~~R~~~~  269 (311)
T 3ork_A          259 AKNPENRYQTA  269 (311)
T ss_dssp             CSSGGGSCSSH
T ss_pred             hcCHhhChhhH
Confidence            99999999874

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=100.00  E-value=1.9e-39  Score=259.25  Aligned_cols=203  Identities=18%  Similarity=0.305  Sum_probs=160.7

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC--C---chHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA--P---LPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~--~---~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ..+++.+|++++++++||||+++++++...+..++||||+++++|.+++...  .   .....++.+++.||.|||   +
T Consensus        62 ~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH---~  138 (283)
T 3gen_A           62 SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLE---S  138 (283)
T ss_dssp             CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEECCCTTCBHHHHHHCGGGCCCHHHHHHHHHHHHHHHHHHH---H
T ss_pred             CHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEeccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            4577999999999999999999999999999999999999999999998662  1   256789999999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh-
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA-  165 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~-  165 (241)
                      .+++|+||||+||+++.++.++|+|||.+......... ......+++.|+|||.+.+..++.++||||||+++|+|++ 
T Consensus       139 ~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~  217 (283)
T 3gen_A          139 KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYT-SSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSL  217 (283)
T ss_dssp             TTCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHHHH-STTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTT
T ss_pred             CCccCCCCccceEEEcCCCCEEEccccccccccccccc-cccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhC
Confidence            99999999999999999999999999998765432111 1122345678999999998899999999999999999998 


Q ss_pred             cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          166 GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       166 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      |+.||....         ..+....... ....  ..   ..        ..++.+.+++.+||+.||++|||++|
T Consensus       218 g~~p~~~~~---------~~~~~~~~~~-~~~~--~~---~~--------~~~~~l~~li~~~l~~~p~~Rps~~~  270 (283)
T 3gen_A          218 GKMPYERFT---------NSETAEHIAQ-GLRL--YR---PH--------LASEKVYTIMYSCWHEKADERPTFKI  270 (283)
T ss_dssp             TCCTTTTSC---------HHHHHHHHHT-TCCC--CC---CT--------TCCHHHHHHHHHTTCSSGGGSCCHHH
T ss_pred             CCCCccccC---------hhHHHHHHhc-ccCC--CC---CC--------cCCHHHHHHHHHHccCChhHCcCHHH
Confidence            999996521         1112222111 1100  01   11        11257889999999999999999753

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=100.00  E-value=1.1e-39  Score=266.04  Aligned_cols=215  Identities=20%  Similarity=0.256  Sum_probs=164.2

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC--------c---hHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP--------L---PRLK   69 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~--------~---~~~~   69 (241)
                      ||.+..........++.+|+.++++++||||+++++++...+..++||||+++++|.+++....        .   ..+.
T Consensus        65 vK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~  144 (327)
T 2yfx_A           65 VKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLH  144 (327)
T ss_dssp             EEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHH
T ss_pred             EEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCCcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHH
Confidence            3555444444566789999999999999999999999999999999999999999999986542        1   3678


Q ss_pred             HHHHHHHHhchhhcCCCCCceeccCCCCCeeecC---CCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccC
Q 044022           70 IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNE---ENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICV  146 (241)
Q Consensus        70 ~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~---~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~  146 (241)
                      ++.+++.||.|||   +.+++||||||+||+++.   ...++|+|||.+................+++.|+|||.+.+..
T Consensus       145 i~~qi~~al~~LH---~~~i~H~dlkp~NIli~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  221 (327)
T 2yfx_A          145 VARDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGI  221 (327)
T ss_dssp             HHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHHC------CCGGGSCGGGCCHHHHHHCC
T ss_pred             HHHHHHHHHHHHh---hCCeecCcCCHhHEEEecCCCcceEEECccccccccccccccccCCCcCCCcceeCHhHhcCCC
Confidence            9999999999999   899999999999999984   4569999999987543332222223456788999999998889


Q ss_pred             CCcchhhHHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHH
Q 044022          147 LNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLT  225 (241)
Q Consensus       147 ~~~~~Di~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  225 (241)
                      ++.++||||||+++|+|++ |..||....         ..+......... ...     ...        ..+..+.+++
T Consensus       222 ~~~~~Di~slG~il~ellt~g~~p~~~~~---------~~~~~~~~~~~~-~~~-----~~~--------~~~~~l~~li  278 (327)
T 2yfx_A          222 FTSKTDTWSFGVLLWEIFSLGYMPYPSKS---------NQEVLEFVTSGG-RMD-----PPK--------NCPGPVYRIM  278 (327)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTSCCSSTTCC---------HHHHHHHHHTTC-CCC-----CCT--------TCCHHHHHHH
T ss_pred             CCchhhHHHHHHHHHHHHcCCCCCCCCcC---------HHHHHHHHhcCC-CCC-----CCC--------CCCHHHHHHH
Confidence            9999999999999999998 999985421         112222221111 111     111        1225788999


Q ss_pred             HHhccCCCCCCCCCCC
Q 044022          226 LECVNNSPEDRPTMVD  241 (241)
Q Consensus       226 ~~cl~~~p~~Rpt~~e  241 (241)
                      .+||+.||++|||++|
T Consensus       279 ~~~l~~dp~~Rps~~~  294 (327)
T 2yfx_A          279 TQCWQHQPEDRPNFAI  294 (327)
T ss_dssp             HHHTCSSGGGSCCHHH
T ss_pred             HHHhcCChhhCcCHHH
Confidence            9999999999999753

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=100.00  E-value=2.3e-39  Score=257.96  Aligned_cols=203  Identities=20%  Similarity=0.276  Sum_probs=160.7

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ...+.+.+|++++++++||||+++++++...+..++||||+++++|.+++....    .....++.+++.||.|||   +
T Consensus        48 ~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~  124 (277)
T 3f3z_A           48 EDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMELCTGGELFERVVHKRVFRESDAARIMKDVLSAVAYCH---K  124 (277)
T ss_dssp             SCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHH---H
T ss_pred             chHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEeccCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            456789999999999999999999999999999999999999999999875432    256789999999999999   8


Q ss_pred             CCceeccCCCCCeee---cCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHH
Q 044022           87 RPIVLRNFKTQNILF---NEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL  163 (241)
Q Consensus        87 ~~ivh~dl~~~nil~---~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~  163 (241)
                      .+++|+||||+||++   +.++.++|+|||.+.........   ....+++.|+|||.+.+ .++.++||||||+++|+|
T Consensus       125 ~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~~~~~---~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l  200 (277)
T 3f3z_A          125 LNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGKMM---RTKVGTPYYVSPQVLEG-LYGPECDEWSAGVMMYVL  200 (277)
T ss_dssp             TTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECCTTSCB---CCCCSCTTTCCHHHHTT-CBCTTHHHHHHHHHHHHH
T ss_pred             CCccCCCCCHHHEEEecCCCCCcEEEEecccceeccCccch---hccCCCCCccChHHhcc-cCCchhhehhHHHHHHHH
Confidence            999999999999999   78899999999999876543322   33468999999999875 489999999999999999


Q ss_pred             HhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          164 LAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       164 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                      ++|+.||....         ..+....... +.. ..+.         ......++.+.+++.+||+.||++|||+.
T Consensus       201 ~~g~~p~~~~~---------~~~~~~~~~~-~~~-~~~~---------~~~~~~~~~~~~li~~~l~~dp~~R~s~~  257 (277)
T 3f3z_A          201 LCGYPPFSAPT---------DSEVMLKIRE-GTF-TFPE---------KDWLNVSPQAESLIRRLLTKSPKQRITSL  257 (277)
T ss_dssp             HHSSCSSCCSS---------HHHHHHHHHH-CCC-CCCH---------HHHTTSCHHHHHHHHHHTCSSTTTSCCHH
T ss_pred             HHCCCCCCCCC---------HHHHHHHHHh-CCC-CCCc---------hhhhcCCHHHHHHHHHHccCChhhCcCHH
Confidence            99999995521         1111222111 111 0000         00012236789999999999999999975

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.7e-39  Score=261.13  Aligned_cols=215  Identities=19%  Similarity=0.212  Sum_probs=162.0

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcc-eEEEEecCCCCHHHhhcCCCc-----hHHHHHHHHH
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIP-ILVFQSVEYGTLRDCIFGAPL-----PRLKIASDIV   75 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~-~lv~e~~~~~sL~~~l~~~~~-----~~~~~~~~i~   75 (241)
                      |.+.........+.+.+|++++++++||||+++++++...+.. ++|+||+.+++|.+++.....     ....++.+++
T Consensus        55 K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~  134 (298)
T 3pls_A           55 KSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVLLPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVA  134 (298)
T ss_dssp             EEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEEECCCTTCBHHHHHHCTTCCCBHHHHHHHHHHHH
T ss_pred             eeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEEEecccCCCHHHHHhccccCCCHHHHHHHHHHHH
Confidence            4444433444567899999999999999999999999866654 999999999999999976321     4678999999


Q ss_pred             HHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCc--ceeecccccCCCccCcccccccCCCcchhh
Q 044022           76 NSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGET--HITTDRVIGTRGYSAPEYISICVLNEKSNV  153 (241)
Q Consensus        76 ~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~--~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di  153 (241)
                      .||.|||   +.+++||||||+||+++.++.++|+|||.+........  ........+++.|+|||.+.+..++.++||
T Consensus       135 ~~l~~LH---~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di  211 (298)
T 3pls_A          135 RGMEYLA---EQKFVHRDLAARNCMLDESFTVKVADFGLARDILDREYYSVQQHRHARLPVKWTALESLQTYRFTTKSDV  211 (298)
T ss_dssp             HHHHHHH---HTTCCCSCCSGGGEEECTTCCEEECCTTSSCTTTTGGGGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHH
T ss_pred             HHHHHHH---hCCcccCCCCcceEEEcCCCcEEeCcCCCcccccCCcccccccCcCCCCCccccChhhhccCCCChhhch
Confidence            9999999   89999999999999999999999999999975543221  112233457788999999999899999999


Q ss_pred             HHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCC
Q 044022          154 FSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSP  233 (241)
Q Consensus       154 ~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p  233 (241)
                      ||||+++|+|++|..|+......        .+.... .........     ..        ..+..+.+++.+||+.||
T Consensus       212 ~slG~il~~l~~g~~~~~~~~~~--------~~~~~~-~~~~~~~~~-----~~--------~~~~~l~~li~~~l~~~p  269 (298)
T 3pls_A          212 WSFGVLLWELLTRGAPPYRHIDP--------FDLTHF-LAQGRRLPQ-----PE--------YCPDSLYQVMQQCWEADP  269 (298)
T ss_dssp             HHHHHHHHHHHHTSCCTTTTSCG--------GGHHHH-HHTTCCCCC-----CT--------TCCHHHHHHHHHHTCSSG
T ss_pred             hhHHHHHHHHhhCCCCCCccCCH--------HHHHHH-hhcCCCCCC-----Cc--------cchHHHHHHHHHHccCCh
Confidence            99999999999966554331111        111111 111111111     11        122578899999999999


Q ss_pred             CCCCCCCC
Q 044022          234 EDRPTMVD  241 (241)
Q Consensus       234 ~~Rpt~~e  241 (241)
                      ++|||++|
T Consensus       270 ~~Rps~~~  277 (298)
T 3pls_A          270 AVRPTFRV  277 (298)
T ss_dssp             GGSCCHHH
T ss_pred             hhCcCHHH
Confidence            99999753

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=100.00  E-value=4.1e-39  Score=268.55  Aligned_cols=215  Identities=18%  Similarity=0.292  Sum_probs=157.9

Q ss_pred             Cccccccc-ccccHHHHHHHHHHHHhcC--CCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHH
Q 044022            1 MKFYGHEY-HRHTYGSCINNITYAAQMS--HNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASD   73 (241)
Q Consensus         1 iK~~~~~~-~~~~~~~~~~e~~~l~~l~--h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~   73 (241)
                      ||++..+. .....+.+.+|++++++++  ||||+++++++...+..++||| +.+++|.+++.....    .+..++.|
T Consensus        85 iK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~E-~~~~~L~~~l~~~~~~~~~~~~~i~~q  163 (390)
T 2zmd_A           85 IKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVME-CGNIDLNSWLKKKKSIDPWERKSYWKN  163 (390)
T ss_dssp             EEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEE-CCSEEHHHHHHHCSSCCHHHHHHHHHH
T ss_pred             EEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEEe-cCCCCHHHHHHhcCCCCHHHHHHHHHH
Confidence            35544322 3345678999999999996  5999999999999999999999 557899999865432    46789999


Q ss_pred             HHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc---------
Q 044022           74 IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI---------  144 (241)
Q Consensus        74 i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~---------  144 (241)
                      |+.||.|||   +.+|+||||||+|||++ ++.+||+|||++................||+.|+|||++.+         
T Consensus       164 i~~aL~~lH---~~~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~  239 (390)
T 2zmd_A          164 MLEAVHTIH---QHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGAVNYMPPEAIKDMSSSRENGK  239 (390)
T ss_dssp             HHHHHHHHH---TTTCCCCCCCGGGEEES-SSCEEECCCSSSCCC---------CCSCCCGGGCCHHHHHCC--------
T ss_pred             HHHHHHHHH---HCCeeecCCCHHHEEEE-CCeEEEEecCccccccCCCccccCCCCCcCCCccChHHhhhccccccccc
Confidence            999999999   99999999999999995 58999999999986654433222345579999999999865         


Q ss_pred             --cCCCcchhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHH
Q 044022          145 --CVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASA  222 (241)
Q Consensus       145 --~~~~~~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (241)
                        ..++.++||||||+++|+|++|+.||.....        .................     ...        .+..+.
T Consensus       240 ~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~--------~~~~~~~~~~~~~~~~~-----~~~--------~~~~~~  298 (390)
T 2zmd_A          240 SKSKISPKSDVWSLGCILYYMTYGKTPFQQIIN--------QISKLHAIIDPNHEIEF-----PDI--------PEKDLQ  298 (390)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHSSCTTTTCCC--------HHHHHHHHHCTTSCCCC-----CCC--------SCHHHH
T ss_pred             cccCCCChhhHHHHHHHHHHHHHCCCcchhhhH--------HHHHHHHHhCccccCCC-----Ccc--------chHHHH
Confidence              3688899999999999999999999964211        11111111111111111     111        125688


Q ss_pred             HHHHHhccCCCCCCCCCCC
Q 044022          223 QLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       223 ~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +|+.+||+.||++|||++|
T Consensus       299 ~li~~~L~~dP~~Rps~~e  317 (390)
T 2zmd_A          299 DVLKCCLKRDPKQRISIPE  317 (390)
T ss_dssp             HHHHHHTCSSTTTSCCHHH
T ss_pred             HHHHHHcccChhhCCCHHH
Confidence            9999999999999999753

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=100.00  E-value=3.7e-39  Score=274.26  Aligned_cols=165  Identities=18%  Similarity=0.214  Sum_probs=132.0

Q ss_pred             Cccccccc-ccccHHHHHHHHHHHHhcCCCcccceeeeeeeCC------cceEEEEecCCCCHHHhhcCCCc--hHHHHH
Q 044022            1 MKFYGHEY-HRHTYGSCINNITYAAQMSHNHILKRIGCCLQTP------IPILVFQSVEYGTLRDCIFGAPL--PRLKIA   71 (241)
Q Consensus         1 iK~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~------~~~lv~e~~~~~sL~~~l~~~~~--~~~~~~   71 (241)
                      ||++.... .....+++.+|+.+++.++||||+++++++...+      ..++||||+.+ +|.+.+.....  ....++
T Consensus        92 iK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~~~~lv~E~~~~-~l~~~~~~~l~~~~~~~~~  170 (464)
T 3ttj_A           92 IKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDA-NLCQVIQMELDHERMSYLL  170 (464)
T ss_dssp             EEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCEEEEEEECCSE-EHHHHHTSCCCHHHHHHHH
T ss_pred             EEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCCeEEEEEeCCCC-CHHHHHhhcCCHHHHHHHH
Confidence            35444332 2345677899999999999999999999997554      46999999975 57666654322  467799


Q ss_pred             HHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcch
Q 044022           72 SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKS  151 (241)
Q Consensus        72 ~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~  151 (241)
                      .|++.||.|||   +.+|+||||||+|||++.++.+||+|||++........   .....||+.|+|||++.+..++.++
T Consensus       171 ~qil~aL~~lH---~~~iiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~  244 (464)
T 3ttj_A          171 YQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFM---MTPYVVTRYYRAPEVILGMGYKENV  244 (464)
T ss_dssp             HHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCCCC-----CCC---C----CCCTTCCHHHHTTCCCCTTH
T ss_pred             HHHHHHHHHHH---HCCcccCCCChHhEEEeCCCCEEEEEEEeeeecCCCcc---cCCCcccccccCHHHHcCCCCCHHH
Confidence            99999999999   89999999999999999999999999999976544321   2335789999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcCccccc
Q 044022          152 NVFSFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       152 Di~s~G~~~~~~~~g~~p~~~  172 (241)
                      |||||||++|+|++|+.||..
T Consensus       245 DiwSlG~il~ell~g~~pF~g  265 (464)
T 3ttj_A          245 DIWSVGCIMGEMVRHKILFPG  265 (464)
T ss_dssp             HHHHHHHHHHHHHHSSCSSCC
T ss_pred             HHHHHHHHHHHHHhCCCCCCC
Confidence            999999999999999999954

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=100.00  E-value=1.2e-38  Score=274.48  Aligned_cols=205  Identities=21%  Similarity=0.292  Sum_probs=163.9

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----c---hHHHHHHHHHHHhchhh
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----L---PRLKIASDIVNSLAYLH   82 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----~---~~~~~~~~i~~~l~~lh   82 (241)
                      .....+.+|++++++++||||+++++++......|+||||++||+|.+++....     .   ....++.||+.||.|||
T Consensus       227 ~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVmE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH  306 (543)
T 3c4z_A          227 KGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLH  306 (543)
T ss_dssp             TCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEEEEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHH
Confidence            456788999999999999999999999999999999999999999999886532     1   45678999999999999


Q ss_pred             cCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHH
Q 044022           83 FGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFE  162 (241)
Q Consensus        83 ~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~  162 (241)
                         +++|+||||||+|||++.++.+||+|||++.........  .....||+.|+|||++.+..++.++|+||||+++|+
T Consensus       307 ---~~gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~~~~~~--~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilye  381 (543)
T 3c4z_A          307 ---QRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQTK--TKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYE  381 (543)
T ss_dssp             ---HTTEECCCCCGGGEEECTTSCEEECCCTTCEECCTTCCC--BCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHH
T ss_pred             ---HcCCcccCCChHHEEEeCCCCEEEeecceeeeccCCCcc--cccccCCccccChhhhcCCCCChHHhcCcchHHHHH
Confidence               899999999999999999999999999999876544321  133479999999999999899999999999999999


Q ss_pred             HHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          163 LLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       163 ~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                      |++|+.||......     ....+......... . .     ...        ..+..+.+++.+||+.||++||++.
T Consensus       382 lltG~~PF~~~~~~-----~~~~~~~~~i~~~~-~-~-----~p~--------~~s~~~~~li~~lL~~dP~~R~~~~  439 (543)
T 3c4z_A          382 MIAARGPFRARGEK-----VENKELKQRVLEQA-V-T-----YPD--------KFSPASKDFCEALLQKDPEKRLGFR  439 (543)
T ss_dssp             HHHSSCSSCCTTCC-----CCHHHHHHHHHHCC-C-C-----CCT--------TSCHHHHHHHHHHSCSSGGGSCCCB
T ss_pred             HHhCCCCCCCCccc-----hhHHHHHHHHhhcc-c-C-----CCc--------ccCHHHHHHHHHhccCCHhHCCCCc
Confidence            99999999652111     11122222221111 0 1     111        1225788999999999999999864

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=100.00  E-value=1.3e-39  Score=267.80  Aligned_cols=198  Identities=22%  Similarity=0.346  Sum_probs=156.6

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC--C---chHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA--P---LPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~--~---~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ..+++.+|++++++++||||+++++++...+..++||||+. |+|.+++...  .   ..+..++.+++.||.|||   +
T Consensus        97 ~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~-g~l~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH---~  172 (348)
T 1u5q_A           97 KWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCL-GSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLH---S  172 (348)
T ss_dssp             HHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCS-EEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH---H
T ss_pred             HHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEEecCC-CCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---h
Confidence            45678999999999999999999999999999999999997 6888877422  2   246789999999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccc---ccCCCcchhhHHHHHHHHHH
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYIS---ICVLNEKSNVFSFGAFLFEL  163 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~---~~~~~~~~Di~s~G~~~~~~  163 (241)
                      .+++||||||+|||++.++.+||+|||++......      ....||+.|+|||++.   ...++.++||||||+++|+|
T Consensus       173 ~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~------~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~el  246 (348)
T 1u5q_A          173 HNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA------NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIEL  246 (348)
T ss_dssp             TTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSB------CCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHH
T ss_pred             CCeeeCCCCHHHEEECCCCCEEEeeccCceecCCC------CcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998765432      2346899999999985   45788999999999999999


Q ss_pred             HhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          164 LAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       164 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ++|+.||....         ..+.......... ...    ...        ..++.+.+++.+||+.||++|||++|
T Consensus       247 l~g~~p~~~~~---------~~~~~~~~~~~~~-~~~----~~~--------~~~~~l~~li~~~l~~dP~~Rps~~~  302 (348)
T 1u5q_A          247 AERKPPLFNMN---------AMSALYHIAQNES-PAL----QSG--------HWSEYFRNFVDSCLQKIPQDRPTSEV  302 (348)
T ss_dssp             HHSSCTTTTSC---------HHHHHHHHHHSCC-CCC----CCT--------TSCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             HhCCCCCCCCC---------hHHHHHHHHhcCC-CCC----CCC--------CCCHHHHHHHHHHcccChhhCcCHHH
Confidence            99999995421         1111222211111 010    011        12256889999999999999999853

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=100.00  E-value=8.3e-40  Score=277.32  Aligned_cols=198  Identities=17%  Similarity=0.226  Sum_probs=150.0

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      .....+.+|++++++++||||+++++++...+..++||||+++|+|.+++....    .....++.|++.||.|||   +
T Consensus       190 ~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH---~  266 (446)
T 4ejn_A          190 DEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRERVFSEDRARFYGAEIVSALDYLH---S  266 (446)
T ss_dssp             -----------CCCCCSCTTSCCEEEEEEETTEEEEEECCCSSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHH---H
T ss_pred             HHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEEEeeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHh---h
Confidence            445678899999999999999999999999999999999999999999886532    246778999999999999   7


Q ss_pred             -CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh
Q 044022           87 -RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        87 -~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~  165 (241)
                       .+|+||||||+|||++.++.+||+|||++........  ......||+.|+|||++.+..++.++||||||+++|+|++
T Consensus       267 ~~giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~  344 (446)
T 4ejn_A          267 EKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGA--TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMC  344 (446)
T ss_dssp             HTCCCCCCCCGGGEEECSSSCEEECCCCCCCTTCC-------CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHH
T ss_pred             cCCEEECCCCHHHEEECCCCCEEEccCCCceeccCCCc--ccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhh
Confidence             8999999999999999999999999999875433221  2234578999999999999999999999999999999999


Q ss_pred             cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCC
Q 044022          166 GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRP  237 (241)
Q Consensus       166 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rp  237 (241)
                      |+.||....         ..+......... . .     ....        .+..+.+|+.+||+.||++||
T Consensus       345 g~~Pf~~~~---------~~~~~~~i~~~~-~-~-----~p~~--------~~~~~~~li~~~L~~dP~~R~  392 (446)
T 4ejn_A          345 GRLPFYNQD---------HEKLFELILMEE-I-R-----FPRT--------LGPEAKSLLSGLLKKDPKQRL  392 (446)
T ss_dssp             SSCSSCCSS---------HHHHHHHHHHCC-C-C-----CCTT--------SCHHHHHHHHHHTCSSTTTST
T ss_pred             CCCCCCCCC---------HHHHHHHHHhCC-C-C-----CCcc--------CCHHHHHHHHHHcccCHHHhC
Confidence            999996521         112222221111 0 0     1111        125788999999999999999

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=100.00  E-value=4.1e-40  Score=271.79  Aligned_cols=165  Identities=22%  Similarity=0.295  Sum_probs=140.3

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVN   76 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~   76 (241)
                      ||++..+......+.+.+|++++++++||||+++++++...+..++||||+++++|.+++....    .....++.+++.
T Consensus        63 ~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~~i~~  142 (360)
T 3eqc_A           63 RKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIK  142 (360)
T ss_dssp             EEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEECCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred             EEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEECCCCCCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            3555544444556789999999999999999999999999999999999999999999986532    146789999999


Q ss_pred             HhchhhcCCCC-CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHH
Q 044022           77 SLAYLHFGFPR-PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFS  155 (241)
Q Consensus        77 ~l~~lh~~~~~-~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s  155 (241)
                      ||.|||   +. +++|+||||+||+++.++.++|+|||.+.......    .....|++.|+|||++.+..++.++||||
T Consensus       143 ~l~~lh---~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~Di~s  215 (360)
T 3eqc_A          143 GLTYLR---EKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM----ANSFVGTRSYMSPERLQGTHYSVQSDIWS  215 (360)
T ss_dssp             HHHHHH---HHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHHC--------CCCCTTCCHHHHTTCCCSHHHHHHH
T ss_pred             HHHHHH---HhCCEEcCCccHHHEEECCCCCEEEEECCCCccccccc----ccCCCCCCCeECHHHHcCCCCCchhhHHH
Confidence            999999   75 89999999999999999999999999986442211    13346899999999999989999999999


Q ss_pred             HHHHHHHHHhcCccccc
Q 044022          156 FGAFLFELLAGRIHIWD  172 (241)
Q Consensus       156 ~G~~~~~~~~g~~p~~~  172 (241)
                      ||+++|+|++|+.||..
T Consensus       216 lG~il~~l~~g~~pf~~  232 (360)
T 3eqc_A          216 MGLSLVEMAVGRYPIPP  232 (360)
T ss_dssp             HHHHHHHHHHTSCCSSC
T ss_pred             HHHHHHHHHhCCCCCCC
Confidence            99999999999999964

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=100.00  E-value=2e-39  Score=264.43  Aligned_cols=211  Identities=20%  Similarity=0.276  Sum_probs=160.0

Q ss_pred             cccccccccccHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----------------
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----------------   64 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----------------   64 (241)
                      |.+.........+++.+|+++++++ +||||+++++++...+..++||||+++++|.+++....                
T Consensus        58 K~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~  137 (327)
T 1fvr_A           58 KRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTAS  137 (327)
T ss_dssp             EEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSC
T ss_pred             eeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEEEEecCCCCCHHHHHHhcccccccccccccccccc
Confidence            4443333445667899999999999 99999999999999999999999999999999987543                


Q ss_pred             -c---hHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcc
Q 044022           65 -L---PRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPE  140 (241)
Q Consensus        65 -~---~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE  140 (241)
                       .   ....++.+++.||.|||   +.+++||||||+||+++.++.++|+|||++.......   ......+++.|+|||
T Consensus       138 ~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~~~~~kL~Dfg~~~~~~~~~---~~~~~~~~~~y~aPE  211 (327)
T 1fvr_A          138 TLSSQQLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYV---KKTMGRLPVRWMAIE  211 (327)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECGGGCEEECCTTCEESSCEEC---CC----CCTTTCCHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCccceEEEcCCCeEEEcccCcCccccccc---cccCCCCCccccChh
Confidence             1   46789999999999999   8999999999999999999999999999986432211   112234678899999


Q ss_pred             cccccCCCcchhhHHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHH
Q 044022          141 YISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLH  219 (241)
Q Consensus       141 ~~~~~~~~~~~Di~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (241)
                      .+.+..++.++||||||+++|+|++ |..||....         ..+...... .+....     ...        ..+.
T Consensus       212 ~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~---------~~~~~~~~~-~~~~~~-----~~~--------~~~~  268 (327)
T 1fvr_A          212 SLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMT---------CAELYEKLP-QGYRLE-----KPL--------NCDD  268 (327)
T ss_dssp             HHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCC---------HHHHHHHGG-GTCCCC-----CCT--------TBCH
T ss_pred             hhccccCCchhcchHHHHHHHHHHcCCCCCCCCCc---------HHHHHHHhh-cCCCCC-----CCC--------CCCH
Confidence            9988889999999999999999998 999995521         112222211 111111     111        1225


Q ss_pred             HHHHHHHHhccCCCCCCCCCCC
Q 044022          220 ASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       220 ~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      .+.+++.+||+.||++|||++|
T Consensus       269 ~l~~li~~~l~~dp~~Rps~~e  290 (327)
T 1fvr_A          269 EVYDLMRQCWREKPYERPSFAQ  290 (327)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHH
T ss_pred             HHHHHHHHHccCChhhCcCHHH
Confidence            7899999999999999999753

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=100.00  E-value=1.1e-39  Score=286.77  Aligned_cols=214  Identities=22%  Similarity=0.297  Sum_probs=161.8

Q ss_pred             Ccccccccc-cccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHH
Q 044022            1 MKFYGHEYH-RHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIV   75 (241)
Q Consensus         1 iK~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~   75 (241)
                      ||++..+.. ....+++.+|++++++++|||||++++++. .+..++||||+++|+|.+++.....    .+..++.+|+
T Consensus       401 vK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~-~~~~~lv~E~~~~g~L~~~l~~~~~l~~~~~~~i~~qi~  479 (635)
T 4fl3_A          401 VKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICE-AESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVS  479 (635)
T ss_dssp             EEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEE-SSSEEEEEECCTTEEHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred             EEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe-cCCEEEEEEccCCCCHHHHHhhCCCCCHHHHHHHHHHHH
Confidence            355544332 234678999999999999999999999996 4568899999999999999865432    4678999999


Q ss_pred             HHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcc-eeecccccCCCccCcccccccCCCcchhhH
Q 044022           76 NSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH-ITTDRVIGTRGYSAPEYISICVLNEKSNVF  154 (241)
Q Consensus        76 ~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~-~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~  154 (241)
                      .||.|||   +++|+||||||+|||++.++.+||+|||++......... .......+|+.|+|||++.+..++.++|||
T Consensus       480 ~~L~yLH---~~~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~~~~~t~~y~APE~~~~~~~~~~sDvw  556 (635)
T 4fl3_A          480 MGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVW  556 (635)
T ss_dssp             HHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC-------------CGGGSCHHHHHHCCCCHHHHHH
T ss_pred             HHHHHHH---HCCEeCCCCChHhEEEeCCCCEEEEEcCCccccccCccccccccCCCCceeeeChhhhcCCCCCcHHHHH
Confidence            9999999   899999999999999999999999999999766443211 122233467889999999988999999999


Q ss_pred             HHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCC
Q 044022          155 SFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSP  233 (241)
Q Consensus       155 s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p  233 (241)
                      |||+++|+|++ |+.||....         ..+.... ...+.....+     .        ..+..+.+++.+||+.||
T Consensus       557 SlGv~l~ellt~G~~Pf~~~~---------~~~~~~~-i~~~~~~~~p-----~--------~~~~~l~~li~~cl~~dP  613 (635)
T 4fl3_A          557 SFGVLMWEAFSYGQKPYRGMK---------GSEVTAM-LEKGERMGCP-----A--------GCPREMYDLMNLCWTYDV  613 (635)
T ss_dssp             HHHHHHHHHHTTTCCSSTTCC---------HHHHHHH-HHTTCCCCCC-----T--------TCCHHHHHHHHHHTCSST
T ss_pred             HHHHHHHHHHhCCCCCCCCCC---------HHHHHHH-HHcCCCCCCC-----C--------CCCHHHHHHHHHHcCCCH
Confidence            99999999998 999995521         1122222 2222211111     1        223678999999999999


Q ss_pred             CCCCCCCC
Q 044022          234 EDRPTMVD  241 (241)
Q Consensus       234 ~~Rpt~~e  241 (241)
                      ++|||+++
T Consensus       614 ~~RPs~~~  621 (635)
T 4fl3_A          614 ENRPGFAA  621 (635)
T ss_dssp             TTSCCHHH
T ss_pred             hHCcCHHH
Confidence            99999753

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=100.00  E-value=1.2e-39  Score=261.02  Aligned_cols=198  Identities=23%  Similarity=0.352  Sum_probs=155.3

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc-----hHHHHHHHHHHHhchhhcCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL-----PRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-----~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ...+.+.+|++++++++||||+++++++...+..++||||+++++|.+++.....     .+..++.|++.||.|||   
T Consensus        54 ~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH---  130 (289)
T 4fvq_A           54 NYSESFFEAASMMSKLSHKHLVLNYGVCVCGDENILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLE---  130 (289)
T ss_dssp             GGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTCCEEEEECCTTCBHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCCCEEEEECCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHh---
Confidence            4567899999999999999999999999999999999999999999999876432     46789999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCC--------eEEeeccCceecCCCCcceeecccccCCCccCcccccc-cCCCcchhhHHH
Q 044022           86 PRPIVLRNFKTQNILFNEENV--------AKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI-CVLNEKSNVFSF  156 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~--------~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~  156 (241)
                      +++++||||||+|||++.++.        ++|+|||.+......      ....+++.|+|||.+.+ ..++.++|||||
T Consensus       131 ~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~Diwsl  204 (289)
T 4fvq_A          131 ENTLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVLPK------DILQERIPWVPPECIENPKNLNLATDKWSF  204 (289)
T ss_dssp             HTTCCCCCCCGGGEEEEECCBGGGTBCCEEEECCCCSCTTTSCH------HHHHHTTTTSCHHHHHCGGGCCHHHHHHHH
T ss_pred             hCCeECCCcCcceEEEecCCcccccccceeeeccCcccccccCc------cccCCcCcccCHHHhCCCCCCCchhHHHHH
Confidence            899999999999999998887        999999998644322      23357889999999987 678999999999


Q ss_pred             HHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCC
Q 044022          157 GAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDR  236 (241)
Q Consensus       157 G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~R  236 (241)
                      |+++|+|++|..|+.....        .............   .+     ...        +..+.+++.+||+.||++|
T Consensus       205 G~il~el~~g~~~~~~~~~--------~~~~~~~~~~~~~---~~-----~~~--------~~~l~~li~~~l~~dp~~R  260 (289)
T 4fvq_A          205 GTTLWEICSGGDKPLSALD--------SQRKLQFYEDRHQ---LP-----APK--------AAELANLINNCMDYEPDHR  260 (289)
T ss_dssp             HHHHHHHHTTTCCTTTTSC--------HHHHHHHHHTTCC---CC-----CCS--------SCTTHHHHHHHSCSSGGGS
T ss_pred             HHHHHHHHcCCCCCccccc--------hHHHHHHhhccCC---CC-----CCC--------CHHHHHHHHHHcCCChhHC
Confidence            9999999996554433111        1111111111111   11     111        1357899999999999999


Q ss_pred             CCCCC
Q 044022          237 PTMVD  241 (241)
Q Consensus       237 pt~~e  241 (241)
                      ||++|
T Consensus       261 ps~~~  265 (289)
T 4fvq_A          261 PSFRA  265 (289)
T ss_dssp             CCHHH
T ss_pred             cCHHH
Confidence            99753

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=100.00  E-value=2.8e-39  Score=261.93  Aligned_cols=205  Identities=21%  Similarity=0.331  Sum_probs=151.8

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCC-----cceEEEEecCCCCHHHhhcCC-------C---chHHHHHHHHH
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTP-----IPILVFQSVEYGTLRDCIFGA-------P---LPRLKIASDIV   75 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~-----~~~lv~e~~~~~sL~~~l~~~-------~---~~~~~~~~~i~   75 (241)
                      ...+.+.+|++++++++||||+++++++....     ..++|+||+++++|.+++...       .   ...+.++.+++
T Consensus        78 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~  157 (313)
T 3brb_A           78 REIEEFLSEAACMKDFSHPNVIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIA  157 (313)
T ss_dssp             HHHHHHHHHHHHHHTCCCTTBCCCCEEEEC-------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCCCCCeeeeeEEEeeccccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHH
Confidence            34577999999999999999999999998654     359999999999999998321       1   14678999999


Q ss_pred             HHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHH
Q 044022           76 NSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFS  155 (241)
Q Consensus        76 ~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s  155 (241)
                      .||.|||   +.+++||||||+||+++.++.+||+|||.+................+++.|+|||.+.+..++.++||||
T Consensus       158 ~aL~~LH---~~~ivH~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s  234 (313)
T 3brb_A          158 LGMEYLS---NRNFLHRDLAARNCMLRDDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWA  234 (313)
T ss_dssp             HHHHHHH---TTTCCCCCCSGGGEEECTTSCEEECSCSCC----------------CCGGGSCHHHHHSSCCCHHHHHHH
T ss_pred             HHHHHHH---hCCcccCCCCcceEEEcCCCcEEEeecCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHH
Confidence            9999999   9999999999999999999999999999987664433222223345678899999999889999999999


Q ss_pred             HHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCC
Q 044022          156 FGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPE  234 (241)
Q Consensus       156 ~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~  234 (241)
                      ||+++|+|++ |..||......         +...... .+...     .....        .+..+.+++.+||+.||+
T Consensus       235 lG~il~el~~~g~~p~~~~~~~---------~~~~~~~-~~~~~-----~~~~~--------~~~~l~~li~~~l~~dp~  291 (313)
T 3brb_A          235 FGVTMWEIATRGMTPYPGVQNH---------EMYDYLL-HGHRL-----KQPED--------CLDELYEIMYSCWRTDPL  291 (313)
T ss_dssp             HHHHHHHHHTTSCCSSTTCCGG---------GHHHHHH-TTCCC-----CCBTT--------CCHHHHHHHHHTTCSSGG
T ss_pred             HHHHHHHHHhcCCCCCccCCHH---------HHHHHHH-cCCCC-----CCCcc--------ccHHHHHHHHHHcCCChh
Confidence            9999999999 88898552211         1111111 11111     11111        225789999999999999


Q ss_pred             CCCCCCC
Q 044022          235 DRPTMVD  241 (241)
Q Consensus       235 ~Rpt~~e  241 (241)
                      +|||++|
T Consensus       292 ~Rps~~~  298 (313)
T 3brb_A          292 DRPTFSV  298 (313)
T ss_dssp             GSCCHHH
T ss_pred             hCcCHHH
Confidence            9999753

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=100.00  E-value=3.7e-39  Score=269.63  Aligned_cols=207  Identities=17%  Similarity=0.267  Sum_probs=152.9

Q ss_pred             HHHHHHHHHHHHh-cCCCcccceeeeeee----CCcceEEEEecCCCCHHHhhcCCC---c---hHHHHHHHHHHHhchh
Q 044022           13 YGSCINNITYAAQ-MSHNHILKRIGCCLQ----TPIPILVFQSVEYGTLRDCIFGAP---L---PRLKIASDIVNSLAYL   81 (241)
Q Consensus        13 ~~~~~~e~~~l~~-l~h~~iv~~~~~~~~----~~~~~lv~e~~~~~sL~~~l~~~~---~---~~~~~~~~i~~~l~~l   81 (241)
                      ...+.+|+.++.+ .+||||+++++++..    .+..++||||+++|+|.+++....   .   ....++.+|+.||.||
T Consensus        98 ~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~L  177 (400)
T 1nxk_A           98 CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYL  177 (400)
T ss_dssp             SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEEEEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            3567789998755 489999999999875    557899999999999999997642   1   4678999999999999


Q ss_pred             hcCCCCCceeccCCCCCeeecC---CCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHH
Q 044022           82 HFGFPRPIVLRNFKTQNILFNE---ENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGA  158 (241)
Q Consensus        82 h~~~~~~ivh~dl~~~nil~~~---~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~  158 (241)
                      |   +.+|+||||||+|||++.   ++.+||+|||++........   .....||+.|+|||++.+..++.++||||||+
T Consensus       178 H---~~~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~  251 (400)
T 1nxk_A          178 H---SINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNS---LTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGV  251 (400)
T ss_dssp             H---HTTEECCCCCGGGEEESSSSTTCCEEECCCTTCEECC--------------CTTCCGGGSCCCCSSSHHHHHHHHH
T ss_pred             H---HCCccccCcCcceEEEecCCCCccEEEEecccccccCCCCc---cccCCCCCCccCHhhcCCCCCCCcccHHHHHH
Confidence            9   899999999999999998   78999999999986543321   23456899999999999889999999999999


Q ss_pred             HHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCC
Q 044022          159 FLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT  238 (241)
Q Consensus       159 ~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt  238 (241)
                      ++|+|++|..||...........  ...    ....+.+ ..+.+.+         ...+..+.+|+.+||+.||++|||
T Consensus       252 il~ell~g~~pf~~~~~~~~~~~--~~~----~i~~~~~-~~~~~~~---------~~~s~~~~~li~~~L~~dP~~Rpt  315 (400)
T 1nxk_A          252 IMYILLCGYPPFYSNHGLAISPG--MKT----RIRMGQY-EFPNPEW---------SEVSEEVKMLIRNLLKTEPTQRMT  315 (400)
T ss_dssp             HHHHHHHSSCSCCCCTTCSSCCS--HHH----HHHHTCC-CCCTTTT---------TTSCHHHHHHHHTTSCSSGGGSCC
T ss_pred             HHHHHHhCCCCCCCCccccccHH--HHH----HHHcCcc-cCCCccc---------ccCCHHHHHHHHHHCCCChhHCcC
Confidence            99999999999965322211110  111    1111111 1111110         122357899999999999999999


Q ss_pred             CCC
Q 044022          239 MVD  241 (241)
Q Consensus       239 ~~e  241 (241)
                      ++|
T Consensus       316 ~~e  318 (400)
T 1nxk_A          316 ITE  318 (400)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            753

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=100.00  E-value=3.2e-39  Score=267.43  Aligned_cols=201  Identities=20%  Similarity=0.233  Sum_probs=152.2

Q ss_pred             ccHHHHHHHHHH-HHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCC
Q 044022           11 HTYGSCINNITY-AAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        11 ~~~~~~~~e~~~-l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~   85 (241)
                      .....+.+|..+ ++.++||||+++++++...+..|+||||+++|+|.+++....    .....++.+|+.||.|||   
T Consensus        80 ~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH---  156 (373)
T 2r5t_A           80 KEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYINGGELFYHLQRERCFLEPRARFYAAEIASALGYLH---  156 (373)
T ss_dssp             -----------CCBCCCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            345567777776 467899999999999999999999999999999999886532    245678999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~  165 (241)
                      +++|+||||||+|||++.++.+||+|||++........  ......||+.|+|||++.+..++.++|+||||+++|+|++
T Consensus       157 ~~givHrDlkp~NIll~~~g~ikL~DFG~a~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~  234 (373)
T 2r5t_A          157 SLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNS--TTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLY  234 (373)
T ss_dssp             HTTCCCCCCCGGGEEECTTSCEEECCCCBCGGGBCCCC--CCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHH
T ss_pred             HCCceecCCCHHHEEECCCCCEEEeeCccccccccCCC--ccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHc
Confidence            89999999999999999999999999999875332211  1234578999999999999899999999999999999999


Q ss_pred             cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          166 GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       166 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                      |..||....         ..+......... .      .+....        +..+.+++.+||+.||++||++.
T Consensus       235 G~~Pf~~~~---------~~~~~~~i~~~~-~------~~~~~~--------~~~~~~li~~lL~~dp~~R~~~~  285 (373)
T 2r5t_A          235 GLPPFYSRN---------TAEMYDNILNKP-L------QLKPNI--------TNSARHLLEGLLQKDRTKRLGAK  285 (373)
T ss_dssp             SSCTTCCSB---------HHHHHHHHHHSC-C------CCCSSS--------CHHHHHHHHHHTCSSGGGSTTTT
T ss_pred             CCCCCCCCC---------HHHHHHHHHhcc-c------CCCCCC--------CHHHHHHHHHHcccCHHhCCCCC
Confidence            999996521         122222222111 1      111112        25688999999999999999984

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=100.00  E-value=1.5e-39  Score=278.43  Aligned_cols=204  Identities=24%  Similarity=0.289  Sum_probs=162.5

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ...+.+.+|++++++++||||+++++++...+..++|+||+.+++|.+++.....    ....++.|++.||.|||   +
T Consensus        68 ~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~  144 (484)
T 3nyv_A           68 TDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITYMH---K  144 (484)
T ss_dssp             SCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHTCSCCBHHHHHHHHHHHHHHHHHHH---H
T ss_pred             hHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            4577899999999999999999999999999999999999999999998865432    46789999999999999   8


Q ss_pred             CCceeccCCCCCeee---cCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHH
Q 044022           87 RPIVLRNFKTQNILF---NEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL  163 (241)
Q Consensus        87 ~~ivh~dl~~~nil~---~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~  163 (241)
                      ++++||||||+|||+   +.++.+||+|||++.........   ....||+.|+|||++.+ .++.++||||+|+++|+|
T Consensus       145 ~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~---~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~l  220 (484)
T 3nyv_A          145 NKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKM---KDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYIL  220 (484)
T ss_dssp             TTCCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBCCCCSH---HHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHH
T ss_pred             CCeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEccccccc---ccCCCCccccCceeecC-CCCCcceeHHHHHHHHHH
Confidence            999999999999999   56789999999998766544321   33468999999999875 689999999999999999


Q ss_pred             HhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          164 LAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       164 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ++|..||...         ...+...........  ...+.+         ...++.+.+|+.+||+.||++|||++|
T Consensus       221 l~g~~pf~~~---------~~~~~~~~i~~~~~~--~~~~~~---------~~~s~~~~~li~~~L~~dp~~R~s~~e  278 (484)
T 3nyv_A          221 LSGCPPFNGA---------NEYDILKKVEKGKYT--FELPQW---------KKVSESAKDLIRKMLTYVPSMRISARD  278 (484)
T ss_dssp             HHSSCSSCCS---------SHHHHHHHHHHCCCC--CCSGGG---------GGSCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             HHCCCCCCCC---------CHHHHHHHHHcCCCC--CCCccc---------ccCCHHHHHHHHHHCCCChhHCcCHHH
Confidence            9999999652         112222222221111  111111         123367899999999999999999853

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=100.00  E-value=3.7e-39  Score=257.17  Aligned_cols=200  Identities=20%  Similarity=0.330  Sum_probs=158.4

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      .....+.+|+.++++++||||+++++++...+..++||||+++++|.+++....    .....++.+++.||.|||   +
T Consensus        51 ~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~qi~~~l~~LH---~  127 (279)
T 3fdn_A           51 GVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH---S  127 (279)
T ss_dssp             TCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---T
T ss_pred             hHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---h
Confidence            346678999999999999999999999999999999999999999999886532    246789999999999999   9


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhc
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      .+++|+||||+||+++.++.++|+|||.+........    ....+++.|+|||.+.+..++.++||||||+++|+|++|
T Consensus       128 ~~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g  203 (279)
T 3fdn_A          128 KRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRR----TDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVG  203 (279)
T ss_dssp             TTCEECCCCGGGEEECTTSCEEECSCCEESCC------------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHS
T ss_pred             CCEecccCChHhEEEcCCCCEEEEeccccccCCcccc----cccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHC
Confidence            9999999999999999999999999998855433221    334689999999999988899999999999999999999


Q ss_pred             CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          167 RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ..||...         ...+......... . .     ...        ..+..+.+++.+||+.||++|||++|
T Consensus       204 ~~p~~~~---------~~~~~~~~~~~~~-~-~-----~~~--------~~~~~~~~li~~~l~~~p~~Rps~~e  254 (279)
T 3fdn_A          204 KPPFEAN---------TYQETYKRISRVE-F-T-----FPD--------FVTEGARDLISRLLKHNPSQRPMLRE  254 (279)
T ss_dssp             SCTTCCS---------SHHHHHHHHHHTC-C-C-----CCT--------TSCHHHHHHHHHHCCSSGGGSCCHHH
T ss_pred             CCCCCCC---------cHHHHHHHHHhCC-C-C-----CCC--------cCCHHHHHHHHHHhccChhhCCCHHH
Confidence            9999541         1112222211111 0 0     111        12256889999999999999999853

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=100.00  E-value=2.5e-39  Score=270.50  Aligned_cols=230  Identities=17%  Similarity=0.211  Sum_probs=170.7

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCC--cceEEEEecCCCCHHHhhcCCC----c---hHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTP--IPILVFQSVEYGTLRDCIFGAP----L---PRLKIA   71 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~e~~~~~sL~~~l~~~~----~---~~~~~~   71 (241)
                      ||++.........+.+.+|++++++++||||+++++++...+  ..++||||+++|+|.+++....    .   ....++
T Consensus        39 iK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~  118 (396)
T 4eut_A           39 IKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVL  118 (396)
T ss_dssp             EEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEECCCTTEEHHHHTTSGGGTTCCCHHHHHHHH
T ss_pred             EEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEEEecCCCCCHHHHHHhhhcccCCCHHHHHHHH
Confidence            466665555566788899999999999999999999998655  6799999999999999997642    1   467899


Q ss_pred             HHHHHHhchhhcCCCCCceeccCCCCCeee----cCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc---
Q 044022           72 SDIVNSLAYLHFGFPRPIVLRNFKTQNILF----NEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI---  144 (241)
Q Consensus        72 ~~i~~~l~~lh~~~~~~ivh~dl~~~nil~----~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~---  144 (241)
                      .+++.||.|||   +.+++||||||+|||+    +.++.+||+|||.+.........   ....|++.|+|||++..   
T Consensus       119 ~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~~~~~~~~---~~~~gt~~y~aPE~~~~~~~  192 (396)
T 4eut_A          119 RDVVGGMNHLR---ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQF---VSLYGTEEYLHPDMYERAVL  192 (396)
T ss_dssp             HHHHHHHHHHH---HTTEECCCCCGGGEEEEECTTSCEEEEECCGGGCEECCCGGGS---SCSSSCCTTCCHHHHHHHCC
T ss_pred             HHHHHHHHHHH---HCCEEECCcCHHHEEEeecCCCceeEEEecCCCceEccCCCcc---ccccCCccccCHHHhhcccc
Confidence            99999999999   8999999999999999    77788999999999876543321   23468999999999865   


Q ss_pred             -----cCCCcchhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCC------CCC--ccccCCC-
Q 044022          145 -----CVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGI------PAP--IIVQDIP-  210 (241)
Q Consensus       145 -----~~~~~~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~-  210 (241)
                           ..++.++||||||+++|+|++|+.||.......     ...+.+............      ...  .+....+ 
T Consensus       193 ~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~-----~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  267 (396)
T 4eut_A          193 RKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPR-----RNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPV  267 (396)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTT-----TCHHHHHHHHHSCCTTCCEEEECSTTCCEEEESSCCT
T ss_pred             ccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCccc-----chHHHHHHHhcCCCcccchhheeccCCCcccCccCCc
Confidence                 467789999999999999999999996522211     112222222221110000      000  0001111 


Q ss_pred             -chhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          211 -CIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       211 -~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                       ..........+.+++.+||+.||++|||++|
T Consensus       268 ~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e  299 (396)
T 4eut_A          268 SCSLSRGLQVLLTPVLANILEADQEKCWGFDQ  299 (396)
T ss_dssp             TCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHH
T ss_pred             ccccchHHHhhchHHHHHhhccChhhhccHHH
Confidence             1112466778999999999999999999853

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=100.00  E-value=2.7e-39  Score=257.72  Aligned_cols=201  Identities=19%  Similarity=0.253  Sum_probs=141.0

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ..+.+.+|++++++++||||+++++++...+..++|+||+++++|.+++....     .....++.+++.||.|||   +
T Consensus        54 ~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~  130 (278)
T 3cok_A           54 MVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLVLEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLH---S  130 (278)
T ss_dssp             CHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEEEECCTTEEHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHH---H
T ss_pred             HHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEEEecCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            45789999999999999999999999999999999999999999999987642     146789999999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhc
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      .+++|+||||+||+++.++.++|+|||.+.........  .....+++.|+|||.+.+..++.++||||||+++|+|++|
T Consensus       131 ~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g  208 (278)
T 3cok_A          131 HGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHEK--HYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIG  208 (278)
T ss_dssp             TTEECSSCCGGGEEECTTCCEEECCCTTCEECC------------------------------CTHHHHHHHHHHHHHHS
T ss_pred             CCeecCCCCHHHEEEcCCCCEEEEeecceeeccCCCCc--ceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999866433221  1234688999999999988899999999999999999999


Q ss_pred             CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          167 RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +.||.......         ....    .....   .....        ..+..+.+++.+||+.||++|||++|
T Consensus       209 ~~p~~~~~~~~---------~~~~----~~~~~---~~~~~--------~~~~~~~~li~~~l~~dp~~Rps~~~  259 (278)
T 3cok_A          209 RPPFDTDTVKN---------TLNK----VVLAD---YEMPS--------FLSIEAKDLIHQLLRRNPADRLSLSS  259 (278)
T ss_dssp             SCSSCCCSCC------------------CCSSC---CCCCT--------TSCHHHHHHHHHHSCSSGGGSCCHHH
T ss_pred             CCCCCChhHHH---------HHHH----Hhhcc---cCCcc--------ccCHHHHHHHHHHcccCHhhCCCHHH
Confidence            99996521110         0000    00000   01111        12257889999999999999999753

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=100.00  E-value=2.7e-39  Score=276.94  Aligned_cols=204  Identities=23%  Similarity=0.283  Sum_probs=159.4

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      .....+.+|++++++++||||+++++++...+..++|+||+++++|.+.+....    .....++.+++.||.|||   +
T Consensus        63 ~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~al~~lH---~  139 (486)
T 3mwu_A           63 KDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMH---K  139 (486)
T ss_dssp             SCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---H
T ss_pred             hHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            456789999999999999999999999999999999999999999998875432    256789999999999999   8


Q ss_pred             CCceeccCCCCCeeec---CCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHH
Q 044022           87 RPIVLRNFKTQNILFN---EENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL  163 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~---~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~  163 (241)
                      .+|+||||||+|||++   .++.+||+|||++........   .....||+.|+|||++.+ .++.++||||+|+++|+|
T Consensus       140 ~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~l  215 (486)
T 3mwu_A          140 HNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTK---MKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYIL  215 (486)
T ss_dssp             TTCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBCCC-------CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHH
T ss_pred             CCeEeccCchHHEEEecCCCCCCEEEEECCcCeECCCCCc---cCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHH
Confidence            9999999999999995   456799999999876544322   233578999999999875 589999999999999999


Q ss_pred             HhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          164 LAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       164 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ++|..||...         ...+............  ..+.+         ...+..+.+++.+||+.||++|||+.|
T Consensus       216 l~g~~pf~~~---------~~~~~~~~i~~~~~~~--~~~~~---------~~~s~~~~~li~~~L~~dp~~R~t~~~  273 (486)
T 3mwu_A          216 LSGTPPFYGK---------NEYDILKRVETGKYAF--DLPQW---------RTISDDAKDLIRKMLTFHPSLRITATQ  273 (486)
T ss_dssp             HHSSCSSCCS---------SHHHHHHHHHHTCCCS--CSGGG---------GGSCHHHHHHHHHHTCSSTTTSCCHHH
T ss_pred             HhCCCCCCCC---------CHHHHHHHHHhCCCCC--CCccc---------CCCCHHHHHHHHHHcCCChhhCcCHHH
Confidence            9999999652         1122222222211110  11111         122357889999999999999999853

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=100.00  E-value=2.9e-39  Score=261.51  Aligned_cols=225  Identities=18%  Similarity=0.203  Sum_probs=157.0

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ..+.+.+|++++++++||||+++++++...+..++||||+++++|.+++.....    ....++.+++.||.|||   +.
T Consensus        45 ~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~l~~lH---~~  121 (311)
T 4agu_A           45 IKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFEYCDHTVLHELDRYQRGVPEHLVKSITWQTLQAVNFCH---KH  121 (311)
T ss_dssp             HHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCSEEHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHH---HT
T ss_pred             HHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEEEeCCCchHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHH---HC
Confidence            456788999999999999999999999999999999999999999988765422    46789999999999999   89


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc-cCCCcchhhHHHHHHHHHHHhc
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI-CVLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      +++|+||||+||+++.++.++|+|||.+..........  ....+++.|+|||.+.+ ..++.++||||||+++|+|++|
T Consensus       122 ~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~--~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g  199 (311)
T 4agu_A          122 NCIHRDVKPENILITKHSVIKLCDFGFARLLTGPSDYY--DDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSG  199 (311)
T ss_dssp             TEECCCCSGGGEEECTTSCEEECCCTTCEECC--------------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHS
T ss_pred             CCcCCCCChhhEEEcCCCCEEEeeCCCchhccCccccc--CCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhC
Confidence            99999999999999999999999999998765432221  23468899999999976 5679999999999999999999


Q ss_pred             CcccccccccCCC------cccchHHHHHHHhhhcccCCCCCCccccCCCc-hhHHHHHHHHHHHHHHhccCCCCCCCCC
Q 044022          167 RIHIWDLLKDTHD------HGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPC-IEKEQQLHASAQLTLECVNNSPEDRPTM  239 (241)
Q Consensus       167 ~~p~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~cl~~~p~~Rpt~  239 (241)
                      ..||.........      .+.....................+......+. ......+..+.+++.+||+.||++|||+
T Consensus       200 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~  279 (311)
T 4agu_A          200 VPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSTNQYFSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTC  279 (311)
T ss_dssp             SCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHTCGGGTTCCCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCH
T ss_pred             CCCCCCCCHHHHHHHHHHHhcccccccccccccccccccCcCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCH
Confidence            9999652111000      00000000001111111111111100000000 0001233568899999999999999998


Q ss_pred             CC
Q 044022          240 VD  241 (241)
Q Consensus       240 ~e  241 (241)
                      +|
T Consensus       280 ~e  281 (311)
T 4agu_A          280 EQ  281 (311)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=3e-39  Score=255.88  Aligned_cols=203  Identities=22%  Similarity=0.321  Sum_probs=160.5

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ..+.+.+|++++++++||||+++++++...+..++||||+++++|.+++....     .....++.+++.||.|||   +
T Consensus        46 ~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~  122 (267)
T 3t9t_A           46 SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLE---E  122 (267)
T ss_dssp             CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECCCTTCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---H
T ss_pred             CHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeCCCCCcHHHHHhhCcccCCHHHHHHHHHHHHHHHHHHH---h
Confidence            45789999999999999999999999999999999999999999999986542     146789999999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh-
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA-  165 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~-  165 (241)
                      .+++|+||||+||+++.++.++|+|||.+........ .......++..|+|||.+.+..++.++||||||+++|+|++ 
T Consensus       123 ~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~  201 (267)
T 3t9t_A          123 ACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQY-TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSE  201 (267)
T ss_dssp             TTCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHHH-HSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTT
T ss_pred             CCcccCCCchheEEECCCCCEEEcccccccccccccc-cccccccccccccChhhhcCCCccchhchhhhHHHHHHHhcc
Confidence            9999999999999999999999999999876543211 11122346778999999998889999999999999999999 


Q ss_pred             cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          166 GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       166 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      |..||....         ..+....... +....     ...        ..+..+.+++.+||+.||++|||+.|
T Consensus       202 g~~p~~~~~---------~~~~~~~i~~-~~~~~-----~~~--------~~~~~l~~li~~~l~~~p~~Rps~~~  254 (267)
T 3t9t_A          202 GKIPYENRS---------NSEVVEDIST-GFRLY-----KPR--------LASTHVYQIMNHCWRERPEDRPAFSR  254 (267)
T ss_dssp             SCCTTTTCC---------HHHHHHHHHT-TCCCC-----CCT--------TSCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             CCCCCCCCC---------HHHHHHHHhc-CCcCC-----CCc--------cCcHHHHHHHHHHccCChhhCcCHHH
Confidence            899985421         1222222211 11100     011        12257889999999999999999753

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.4e-38  Score=258.69  Aligned_cols=215  Identities=21%  Similarity=0.336  Sum_probs=156.5

Q ss_pred             cHHHHHHHHHHHHhc--CCCcccceeeeeeeC----CcceEEEEecCCCCHHHhhcCCCc---hHHHHHHHHHHHhchhh
Q 044022           12 TYGSCINNITYAAQM--SHNHILKRIGCCLQT----PIPILVFQSVEYGTLRDCIFGAPL---PRLKIASDIVNSLAYLH   82 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l--~h~~iv~~~~~~~~~----~~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~i~~~l~~lh   82 (241)
                      ....+.+|.+++..+  +||||+++++++...    ...++||||+++|+|.+++.....   ....++.+++.||.|||
T Consensus        72 ~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH  151 (337)
T 3mdy_A           72 EEASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQLYLITDYHENGSLYDYLKSTTLDAKSMLKLAYSSVSGLCHLH  151 (337)
T ss_dssp             GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGCEEEEEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCCceEEEEeccCCCcHHHHhhccCCCHHHHHHHHHHHHHHHHHHH
Confidence            345566677777665  999999999999887    678999999999999999976543   46789999999999999


Q ss_pred             cCCCC--------CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcce--eecccccCCCccCcccccccCCCcc--
Q 044022           83 FGFPR--------PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHI--TTDRVIGTRGYSAPEYISICVLNEK--  150 (241)
Q Consensus        83 ~~~~~--------~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~--~~~~~~~~~~~~aPE~~~~~~~~~~--  150 (241)
                         +.        +++||||||+|||++.++.+||+|||.+..........  ......||+.|+|||++.+......  
T Consensus       152 ---~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~  228 (337)
T 3mdy_A          152 ---TEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQ  228 (337)
T ss_dssp             ---SCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTH
T ss_pred             ---HhhhhhccCCCEEecccchHHEEECCCCCEEEEeCCCceeeccccccccCCCCCCccCcceeChhhcccccCCcccc
Confidence               77        99999999999999999999999999997664432211  1224578999999999987766654  


Q ss_pred             ----hhhHHHHHHHHHHHhc----------CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHH
Q 044022          151 ----SNVFSFGAFLFELLAG----------RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQ  216 (241)
Q Consensus       151 ----~Di~s~G~~~~~~~~g----------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (241)
                          +||||||+++|+|++|          ..||.......    ..... .................       .....
T Consensus       229 ~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~-------~~~~~  296 (337)
T 3mdy_A          229 SYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPSD----PSYED-MREIVCIKKLRPSFPNR-------WSSDE  296 (337)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSS----CCHHH-HHHHHTTSCCCCCCCGG-------GGGSH
T ss_pred             CccccchHHHHHHHHHHHhccCcccccccccccHhhhcCCC----Cchhh-hHHHHhhhccCcccccc-------chhhH
Confidence                9999999999999999          55554321111    11111 11111111111111111       11236


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          217 QLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       217 ~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ++..+.+++.+||+.||++|||++|
T Consensus       297 ~~~~l~~li~~~l~~dP~~Rps~~e  321 (337)
T 3mdy_A          297 CLRQMGKLMTECWAHNPASRLTALR  321 (337)
T ss_dssp             HHHHHHHHHHHHSCSSGGGSCCHHH
T ss_pred             HHHHHHHHHHHhhhhChhhCCCHHH
Confidence            6788999999999999999999853

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=5.4e-39  Score=267.75  Aligned_cols=158  Identities=25%  Similarity=0.306  Sum_probs=132.4

Q ss_pred             ccHHHHHHHHHHHHhcC-CCcccceeeeeeeCC--cceEEEEecCCCCHHHhhcCCCc---hHHHHHHHHHHHhchhhcC
Q 044022           11 HTYGSCINNITYAAQMS-HNHILKRIGCCLQTP--IPILVFQSVEYGTLRDCIFGAPL---PRLKIASDIVNSLAYLHFG   84 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~-h~~iv~~~~~~~~~~--~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~i~~~l~~lh~~   84 (241)
                      ....++.+|+.+++++. ||||+++++++...+  ..|+||||+. ++|.+++.....   ....++.|++.||.|||  
T Consensus        50 ~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~i~~qi~~~L~~LH--  126 (388)
T 3oz6_A           50 TDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDVYLVFDYME-TDLHAVIRANILEPVHKQYVVYQLIKVIKYLH--  126 (388)
T ss_dssp             HHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCEEEEEECCS-EEHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEEEEEecccC-cCHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH--
Confidence            45677889999999997 999999999997544  6899999997 699998876533   46678999999999999  


Q ss_pred             CCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCc-------------------ceeecccccCCCccCcccccc-
Q 044022           85 FPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGET-------------------HITTDRVIGTRGYSAPEYISI-  144 (241)
Q Consensus        85 ~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~-------------------~~~~~~~~~~~~~~aPE~~~~-  144 (241)
                       +.+|+||||||+|||++.++.+||+|||+++.......                   ........||+.|+|||++.+ 
T Consensus       127 -~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  205 (388)
T 3oz6_A          127 -SGGLLHRDMKPSNILLNAECHVKVADFGLSRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGS  205 (388)
T ss_dssp             -HTTEECCCCCGGGEEECTTCCEEECCCTTCEESSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTC
T ss_pred             -hCCEEeCCCCHHHeEEcCCCCEEecCCcccccccccccccccccccccccccccccccccccCCcccCCcCCHHHhcCC
Confidence             89999999999999999999999999999986533110                   111233578999999999986 


Q ss_pred             cCCCcchhhHHHHHHHHHHHhcCccccc
Q 044022          145 CVLNEKSNVFSFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       145 ~~~~~~~Di~s~G~~~~~~~~g~~p~~~  172 (241)
                      ..++.++|||||||++|+|++|++||..
T Consensus       206 ~~~~~~~DiwSlG~il~ell~g~~pf~~  233 (388)
T 3oz6_A          206 TKYTKGIDMWSLGCILGEILCGKPIFPG  233 (388)
T ss_dssp             CCCCTHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred             CCCCChhhHHHHHHHHHHHHhCCCCCCC
Confidence            5789999999999999999999999954

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=100.00  E-value=4.3e-39  Score=276.13  Aligned_cols=204  Identities=23%  Similarity=0.312  Sum_probs=160.2

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      .....+.+|+.++++++||||+++++++...+..++||||+++|+|.+.+....    .....++.+++.||.|||   +
T Consensus        78 ~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~g~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~  154 (494)
T 3lij_A           78 SSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVMECYKGGELFDEIIHRMKFNEVDAAVIIKQVLSGVTYLH---K  154 (494)
T ss_dssp             CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---H
T ss_pred             hHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            446778999999999999999999999999999999999999999998875432    256789999999999999   8


Q ss_pred             CCceeccCCCCCeeecCC---CCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHH
Q 044022           87 RPIVLRNFKTQNILFNEE---NVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL  163 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~---~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~  163 (241)
                      .+++||||||+|||++..   +.+||+|||++........   .....||+.|+|||++. ..++.++||||+|+++|+|
T Consensus       155 ~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~~~~---~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~l  230 (494)
T 3lij_A          155 HNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQKK---MKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFIL  230 (494)
T ss_dssp             TTEECSCCSGGGEEESCSSTTCCEEECCCTTCEECBTTBC---BCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHH
T ss_pred             CCceeccCChhhEEEeCCCCCCcEEEEECCCCeECCCCcc---ccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHH
Confidence            999999999999999764   5599999999987654322   23357899999999886 5689999999999999999


Q ss_pred             HhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          164 LAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       164 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ++|..||...         ...+......... . ....+.+ .        ..++.+.+++.+||+.||++|||++|
T Consensus       231 l~g~~pf~~~---------~~~~~~~~i~~~~-~-~~~~~~~-~--------~~s~~~~~li~~~L~~dp~~R~s~~e  288 (494)
T 3lij_A          231 LAGYPPFGGQ---------TDQEILRKVEKGK-Y-TFDSPEW-K--------NVSEGAKDLIKQMLQFDSQRRISAQQ  288 (494)
T ss_dssp             HHSSCSSCCS---------SHHHHHHHHHHTC-C-CCCSGGG-T--------TSCHHHHHHHHHHTCSSTTTSCCHHH
T ss_pred             HhCCCCCCCC---------CHHHHHHHHHhCC-C-CCCchhc-c--------cCCHHHHHHHHHHCCCChhhCccHHH
Confidence            9999999652         1122222222211 1 1111111 1        12357889999999999999999853

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=100.00  E-value=1.8e-38  Score=255.01  Aligned_cols=202  Identities=21%  Similarity=0.277  Sum_probs=162.5

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ...+.+.+|+.++++++||||+++++++...+..++||||+++++|.+++....    .....++.+++.||.|||   +
T Consensus        57 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~  133 (294)
T 2rku_A           57 HQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYLH---R  133 (294)
T ss_dssp             HHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHH---H
T ss_pred             HHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            346678899999999999999999999999999999999999999999876432    256789999999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhc
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      .+++|+||||+||+++.++.++|+|||.+.........  .....+++.|+|||.+.+..++.++||||||+++|+|++|
T Consensus       134 ~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g  211 (294)
T 2rku_A          134 NRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGER--KKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVG  211 (294)
T ss_dssp             TTEECCCCCGGGEEECTTCCEEECCCTTCEECCSTTCC--BCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHS
T ss_pred             CCccccCCChHhEEEcCCCCEEEEeccCceecccCccc--cccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999876533221  2334688999999999988899999999999999999999


Q ss_pred             CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          167 RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +.||....         ..+......... . .     ....        .+..+.+++.+||+.||++|||++|
T Consensus       212 ~~p~~~~~---------~~~~~~~~~~~~-~-~-----~~~~--------~~~~~~~li~~~l~~~p~~Rps~~~  262 (294)
T 2rku_A          212 KPPFETSC---------LKETYLRIKKNE-Y-S-----IPKH--------INPVAASLIQKMLQTDPTARPTINE  262 (294)
T ss_dssp             SCTTCCSS---------HHHHHHHHHTTC-C-C-----CCTT--------SCHHHHHHHHHHTCSSGGGSCCGGG
T ss_pred             CCCCCCCC---------HHHHHHHHhhcc-C-C-----Cccc--------cCHHHHHHHHHHcccChhhCcCHHH
Confidence            99995421         111111111111 0 0     1111        1256889999999999999999875

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=100.00  E-value=9.6e-39  Score=256.10  Aligned_cols=202  Identities=17%  Similarity=0.249  Sum_probs=156.8

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeee----CCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhh
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQ----TPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLH   82 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~----~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh   82 (241)
                      ...+.+.+|+.++++++||||+++++++..    ....++||||+++++|.+++....    .....++.+++.||.|||
T Consensus        67 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH  146 (290)
T 1t4h_A           67 SERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLH  146 (290)
T ss_dssp             HHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEEEEEEecCCCCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHH
Confidence            456778999999999999999999999875    346899999999999999987532    246789999999999999


Q ss_pred             cCCCCC--ceeccCCCCCeeec-CCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHH
Q 044022           83 FGFPRP--IVLRNFKTQNILFN-EENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAF  159 (241)
Q Consensus        83 ~~~~~~--ivh~dl~~~nil~~-~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~  159 (241)
                         +.+  ++|+||||+||+++ .++.++|+|||.+........    ....+++.|+|||.+. ..++.++||||||++
T Consensus       147 ---~~~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~~~~~~~----~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~~  218 (290)
T 1t4h_A          147 ---TRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFA----KAVIGTPEFMAPEMYE-EKYDESVDVYAFGMC  218 (290)
T ss_dssp             ---TSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCTTSB----EESCSSCCCCCGGGGG-TCCCTHHHHHHHHHH
T ss_pred             ---cCCCCEEECCCCHHHEEEECCCCCEEEeeCCCccccccccc----ccccCCcCcCCHHHHh-ccCCCcchHHHHHHH
Confidence               888  99999999999997 789999999999865443322    2346899999999887 458999999999999


Q ss_pred             HHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCC
Q 044022          160 LFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM  239 (241)
Q Consensus       160 ~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~  239 (241)
                      +|+|++|+.||.....        ......... .+    .........        .++.+.+++.+||+.||++|||+
T Consensus       219 l~~l~~g~~pf~~~~~--------~~~~~~~~~-~~----~~~~~~~~~--------~~~~l~~li~~~l~~dp~~Rps~  277 (290)
T 1t4h_A          219 MLEMATSEYPYSECQN--------AAQIYRRVT-SG----VKPASFDKV--------AIPEVKEIIEGCIRQNKDERYSI  277 (290)
T ss_dssp             HHHHHHSSCTTTTCSS--------HHHHHHHHT-TT----CCCGGGGGC--------CCHHHHHHHHHHSCSSGGGSCCH
T ss_pred             HHHHHhCCCCCCCcCc--------HHHHHHHHh-cc----CCccccCCC--------CCHHHHHHHHHHccCChhhCCCH
Confidence            9999999999954211        111111111 11    111111111        12568999999999999999998


Q ss_pred             CC
Q 044022          240 VD  241 (241)
Q Consensus       240 ~e  241 (241)
                      +|
T Consensus       278 ~e  279 (290)
T 1t4h_A          278 KD  279 (290)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=100.00  E-value=3.8e-39  Score=263.20  Aligned_cols=226  Identities=20%  Similarity=0.292  Sum_probs=159.5

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ...+.+.+|++++++++||||+++++++...+..++||||+++++|.+++....    .....++.+++.||.|||   +
T Consensus        66 ~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~  142 (331)
T 4aaa_A           66 MVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVFEFVDHTILDDLELFPNGLDYQVVQKYLFQIINGIGFCH---S  142 (331)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCSEEHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH---H
T ss_pred             HHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEEecCCcchHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            345668899999999999999999999999999999999999999988765432    246789999999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc-CCCcchhhHHHHHHHHHHHh
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-VLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~~~~~~~  165 (241)
                      .+++|+||||+||+++.++.++|+|||.+.........  .....+++.|+|||.+.+. .++.++||||||+++|+|++
T Consensus       143 ~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~--~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~  220 (331)
T 4aaa_A          143 HNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEV--YDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFM  220 (331)
T ss_dssp             TTCCCCCCCGGGEEECTTSCEEECCCTTC--------------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHH
T ss_pred             CCEEccCcChheEEEcCCCcEEEEeCCCceeecCCccc--cCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999765433221  1234688999999999865 68899999999999999999


Q ss_pred             cCcccccccccCCC------cccchHHHHHHHhhhcccCCCCCCccccCCCch-hHHHHHHHHHHHHHHhccCCCCCCCC
Q 044022          166 GRIHIWDLLKDTHD------HGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCI-EKEQQLHASAQLTLECVNNSPEDRPT  238 (241)
Q Consensus       166 g~~p~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~cl~~~p~~Rpt  238 (241)
                      |+.||.........      .+.....................+......+.. .....++.+.+|+.+||+.||++|||
T Consensus       221 g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt  300 (331)
T 4aaa_A          221 GEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKNPVFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPF  300 (331)
T ss_dssp             SSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHHCGGGTTCCCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCC
T ss_pred             CCCCCCCCCcHHHHHHHHHHhCCCChhhhhHhhhccccccccCccccccchhhhcccchhHHHHHHHHHHhccCcccCCC
Confidence            99999652111000      000000001111111112222222221111100 00123467899999999999999999


Q ss_pred             CCC
Q 044022          239 MVD  241 (241)
Q Consensus       239 ~~e  241 (241)
                      ++|
T Consensus       301 ~~e  303 (331)
T 4aaa_A          301 CAE  303 (331)
T ss_dssp             GGG
T ss_pred             HHH
Confidence            875

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=100.00  E-value=1.4e-38  Score=260.29  Aligned_cols=202  Identities=21%  Similarity=0.277  Sum_probs=162.6

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ...+.+.+|+.++++++||||+++++++...+..++||||+.+++|.+++....    .....++.+++.||.|||   +
T Consensus        83 ~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~  159 (335)
T 2owb_A           83 HQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYLH---R  159 (335)
T ss_dssp             HHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCTTCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHH---H
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEecCCCCCHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            346678899999999999999999999999999999999999999999876432    257789999999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhc
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      .+++|+||||+||+++.++.++|+|||.+.........  .....++..|+|||.+.+..++.++||||||+++|+|++|
T Consensus       160 ~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g  237 (335)
T 2owb_A          160 NRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGER--KKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVG  237 (335)
T ss_dssp             TTEECSCCCGGGEEECTTCCEEECCCTTCEECCSTTCC--BCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHS
T ss_pred             CCCEecCCCchhEEEcCCCCEEEeeccCceecccCccc--ccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHC
Confidence            99999999999999999999999999999876533221  2334689999999999988899999999999999999999


Q ss_pred             CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          167 RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +.||....         ..+......... . .     +...        .+..+.+++.+||+.||++|||++|
T Consensus       238 ~~pf~~~~---------~~~~~~~~~~~~-~-~-----~~~~--------~~~~~~~li~~~l~~dp~~Rps~~e  288 (335)
T 2owb_A          238 KPPFETSC---------LKETYLRIKKNE-Y-S-----IPKH--------INPVAASLIQKMLQTDPTARPTINE  288 (335)
T ss_dssp             SCTTCCSS---------HHHHHHHHHHTC-C-C-----CCTT--------SCHHHHHHHHHHTCSSGGGSCCGGG
T ss_pred             cCCCCCCC---------HHHHHHHHhcCC-C-C-----CCcc--------CCHHHHHHHHHHccCChhHCcCHHH
Confidence            99995421         111111111111 1 1     1111        1256889999999999999999865

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=100.00  E-value=1.1e-38  Score=256.54  Aligned_cols=210  Identities=14%  Similarity=0.077  Sum_probs=161.1

Q ss_pred             cHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC--c---hHHHHHHHHHHHhchhhcCC
Q 044022           12 TYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP--L---PRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~--~---~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ..+.+.+|+++++++ +|+|++++++++......++||||+ +++|.+++....  .   .+..++.|++.||.|||   
T Consensus        48 ~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH---  123 (298)
T 1csn_A           48 DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLL-GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIH---  123 (298)
T ss_dssp             TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---
T ss_pred             ccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEEec-CCCHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH---
Confidence            345688999999999 8999999999999999999999999 899999987432  1   57889999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCC-----eEEeeccCceecCCCCcc-----eeecccccCCCccCcccccccCCCcchhhHH
Q 044022           86 PRPIVLRNFKTQNILFNEENV-----AKWFDFLLSISIPEGETH-----ITTDRVIGTRGYSAPEYISICVLNEKSNVFS  155 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~-----~~l~df~~~~~~~~~~~~-----~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s  155 (241)
                      +.+++||||||+||+++.++.     ++|+|||.+.........     .......||+.|+|||++.+..++.++||||
T Consensus       124 ~~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~s  203 (298)
T 1csn_A          124 EKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEA  203 (298)
T ss_dssp             TTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHH
T ss_pred             hCCEecCCCCHHHEEeccCCCCCCCeEEEEECccccccccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHH
Confidence            999999999999999987766     999999999876543221     1123456899999999999889999999999


Q ss_pred             HHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCC
Q 044022          156 FGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPED  235 (241)
Q Consensus       156 ~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~  235 (241)
                      ||+++|+|++|+.||.......      ..+............  ..+....        ..++.+.+++.+||+.||++
T Consensus       204 lG~il~el~~g~~pf~~~~~~~------~~~~~~~~~~~~~~~--~~~~~~~--------~~~~~l~~li~~~l~~dp~~  267 (298)
T 1csn_A          204 LGHVFMYFLRGSLPWQGLKAAT------NKQKYERIGEKKQST--PLRELCA--------GFPEEFYKYMHYARNLAFDA  267 (298)
T ss_dssp             HHHHHHHHHHSSCTTSSCCSCC------HHHHHHHHHHHHHHS--CHHHHTT--------TSCHHHHHHHHHHHHCCTTC
T ss_pred             HHHHHHHHHcCCCCcchhhccc------cHHHHHHHHhhccCc--cHHHHHh--------hCcHHHHHHHHHHhcCCccc
Confidence            9999999999999996522111      111111111111000  0001111        12367899999999999999


Q ss_pred             CCCCCC
Q 044022          236 RPTMVD  241 (241)
Q Consensus       236 Rpt~~e  241 (241)
                      |||+++
T Consensus       268 RP~~~~  273 (298)
T 1csn_A          268 TPDYDY  273 (298)
T ss_dssp             CCCHHH
T ss_pred             CCCHHH
Confidence            999753

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=100.00  E-value=1e-38  Score=255.20  Aligned_cols=199  Identities=19%  Similarity=0.231  Sum_probs=161.4

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ..+.+.+|++++++++||||+++++++...+..++||||+++++|.+++....    .....++.+++.||.|||   +.
T Consensus        57 ~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH---~~  133 (284)
T 2vgo_A           57 VEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKHGRFDEQRSATFMEELADALHYCH---ER  133 (284)
T ss_dssp             CHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---TT
T ss_pred             HHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEEEEeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HC
Confidence            45778999999999999999999999999999999999999999999886532    246789999999999999   99


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcC
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR  167 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~  167 (241)
                      +++|+||||+||+++.++.++|+|||.+........    ....+++.|+|||.+.+..++.++||||||+++|+|++|.
T Consensus       134 ~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~  209 (284)
T 2vgo_A          134 KVIHRDIKPENLLMGYKGELKIADFGWSVHAPSLRR----RTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGM  209 (284)
T ss_dssp             TEECCCCSGGGEEECTTCCEEECCCTTCEECSSSCB----CCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSS
T ss_pred             CceecCCCHHHEEEcCCCCEEEecccccccCccccc----ccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCC
Confidence            999999999999999999999999999876544321    3346889999999999888999999999999999999999


Q ss_pred             cccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          168 IHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       168 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      .||....         ..+....... ...      .....        .+..+.+++.+||+.||++|||++|
T Consensus       210 ~pf~~~~---------~~~~~~~~~~-~~~------~~~~~--------~~~~~~~li~~~l~~~p~~Rps~~~  259 (284)
T 2vgo_A          210 PPFDSPS---------HTETHRRIVN-VDL------KFPPF--------LSDGSKDLISKLLRYHPPQRLPLKG  259 (284)
T ss_dssp             CTTCCSS---------HHHHHHHHHT-TCC------CCCTT--------SCHHHHHHHHHHSCSSGGGSCCHHH
T ss_pred             CCCCCCC---------HhHHHHHHhc-ccc------CCCCc--------CCHHHHHHHHHHhhcCHhhCCCHHH
Confidence            9995421         1111111111 110      11111        2256889999999999999999753

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=100.00  E-value=9.9e-40  Score=263.03  Aligned_cols=222  Identities=21%  Similarity=0.288  Sum_probs=150.7

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcC--------C----CchHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFG--------A----PLPRL   68 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~--------~----~~~~~   68 (241)
                      ||.+..+......+++.+|++++++++||||+++++++...+..++||||+++++|.+++..        .    .....
T Consensus        45 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~  124 (303)
T 2vwi_A           45 IKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIA  124 (303)
T ss_dssp             EECCC----------------CCCCCCCTTBCCEEEEEESSSCEEEEEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHH
T ss_pred             EEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEEehhccCCchHHHHHHHhhccccccCCCCHHHHH
Confidence            35555444445567889999999999999999999999999999999999999999998863        1    12467


Q ss_pred             HHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcc---eeecccccCCCccCcccccc-
Q 044022           69 KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH---ITTDRVIGTRGYSAPEYISI-  144 (241)
Q Consensus        69 ~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~---~~~~~~~~~~~~~aPE~~~~-  144 (241)
                      .++.+++.||.|||   +.+++|+||||+||+++.++.++|+|||.+.........   .......+++.|+|||.+.+ 
T Consensus       125 ~i~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  201 (303)
T 2vwi_A          125 TILREVLEGLEYLH---KNGQIHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQV  201 (303)
T ss_dssp             HHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTCCEEECCCHHHHHCC---------------CCCTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHH---hCCCCCCCCChhhEEEcCCCCEEEEeccchheeccCCCccchhhhcccCCCccccCHHHhccc
Confidence            89999999999999   899999999999999999999999999998655432111   11223468899999999876 


Q ss_pred             cCCCcchhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhccc--CCCCCCccccCCCchhHHHHHHHHH
Q 044022          145 CVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRF--TGIPAPIIVQDIPCIEKEQQLHASA  222 (241)
Q Consensus       145 ~~~~~~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  222 (241)
                      ..++.++||||||+++|+|++|+.||......        .............  ...........        .+..+.
T Consensus       202 ~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~  265 (303)
T 2vwi_A          202 RGYDFKADIWSFGITAIELATGAAPYHKYPPM--------KVLMLTLQNDPPSLETGVQDKEMLKK--------YGKSFR  265 (303)
T ss_dssp             HCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGG--------GHHHHHHTSSCCCTTC-----CCCCC--------CCHHHH
T ss_pred             cCCCchhhHHHHHHHHHHHHhCCCCCccCchh--------hHHHHHhccCCCccccccccchhhhh--------hhHHHH
Confidence            46889999999999999999999999652211        1111111111000  00111111112        225788


Q ss_pred             HHHHHhccCCCCCCCCCCC
Q 044022          223 QLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       223 ~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +++.+||+.||++|||++|
T Consensus       266 ~li~~~l~~dp~~Rps~~~  284 (303)
T 2vwi_A          266 KMISLCLQKDPEKRPTAAE  284 (303)
T ss_dssp             HHHHHHCCSSGGGSCCHHH
T ss_pred             HHHHHHccCChhhCcCHHH
Confidence            9999999999999999753

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=100.00  E-value=6.6e-39  Score=259.96  Aligned_cols=227  Identities=19%  Similarity=0.282  Sum_probs=160.3

Q ss_pred             CcccccccccccHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIV   75 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~   75 (241)
                      ||++... .......+.+|++++.++ +||||+++++++...+..++||||+++++|.+++....    .....++.|++
T Consensus        43 vK~~~~~-~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~  121 (316)
T 2ac3_A           43 VKIIEKQ-PGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVFEKMRGGSILSHIHKRRHFNELEASVVVQDVA  121 (316)
T ss_dssp             EEEEECC-SSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred             EEEEeeC-cchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEEcCCCCcHHHHHhccCCCCHHHHHHHHHHHH
Confidence            3555433 234577899999999995 79999999999999999999999999999999986532    24678999999


Q ss_pred             HHhchhhcCCCCCceeccCCCCCeeecCCCC---eEEeeccCceecCCCCc-----ceeecccccCCCccCcccccc---
Q 044022           76 NSLAYLHFGFPRPIVLRNFKTQNILFNEENV---AKWFDFLLSISIPEGET-----HITTDRVIGTRGYSAPEYISI---  144 (241)
Q Consensus        76 ~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~---~~l~df~~~~~~~~~~~-----~~~~~~~~~~~~~~aPE~~~~---  144 (241)
                      .||.|||   +.+++||||||+||+++.++.   +||+|||++........     ........|++.|+|||++..   
T Consensus       122 ~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  198 (316)
T 2ac3_A          122 SALDFLH---NKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSE  198 (316)
T ss_dssp             HHHHHHH---HTTCCCCCCCGGGEEESCSSSSCSEEECCTTCCC-------------------CCSGGGCCHHHHHHTSH
T ss_pred             HHHHHHH---hCCceeCCCCHHHEEEccCCCcCceEEEEccCccccccCCccccccccccccccCCcCccChHHhhcccc
Confidence            9999999   899999999999999988776   99999999875432211     111123458999999999875   


Q ss_pred             --cCCCcchhhHHHHHHHHHHHhcCcccccccccCCCcc--cch---HHHHHHHhhhcccCCCCCCccccCCCchhHHHH
Q 044022          145 --CVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHG--CFF---NEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQ  217 (241)
Q Consensus       145 --~~~~~~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (241)
                        ..++.++||||||+++|+|++|+.||...........  ...   ..........+.. ..+.         ......
T Consensus       199 ~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~---------~~~~~~  268 (316)
T 2ac3_A          199 EASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQNMLFESIQEGKY-EFPD---------KDWAHI  268 (316)
T ss_dssp             HHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCHHHHHHHHHHHHHCCC-CCCH---------HHHTTS
T ss_pred             cccCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccchhHHHHHHHHHhccCc-ccCc---------hhcccC
Confidence              4578999999999999999999999965322110000  000   0111111111111 1110         000122


Q ss_pred             HHHHHHHHHHhccCCCCCCCCCCC
Q 044022          218 LHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       218 ~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +..+.+|+.+||+.||++|||++|
T Consensus       269 ~~~~~~li~~~L~~dP~~Rps~~e  292 (316)
T 2ac3_A          269 SCAAKDLISKLLVRDAKQRLSAAQ  292 (316)
T ss_dssp             CHHHHHHHHHHSCSSTTTSCCHHH
T ss_pred             CHHHHHHHHHHhhCChhhCCCHHH
Confidence            367899999999999999999853

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=100.00  E-value=5e-39  Score=262.42  Aligned_cols=207  Identities=17%  Similarity=0.178  Sum_probs=160.4

Q ss_pred             HHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC--Cc---hHHHHHHHHHHHhchhhcCCC
Q 044022           13 YGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA--PL---PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        13 ~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~--~~---~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      .+.+.+|+++++++ +||||+++++++...+..++||||+ +++|.+++...  ..   .+..++.+++.||.|||   +
T Consensus        48 ~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~  123 (330)
T 2izr_A           48 APQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLELL-GPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVH---S  123 (330)
T ss_dssp             SCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---H
T ss_pred             hHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEEeC-CCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH---h
Confidence            45688999999999 9999999999999999999999999 89999998743  22   56789999999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCC-----eEEeeccCceecCCCCcce-----eecccccCCCccCcccccccCCCcchhhHHH
Q 044022           87 RPIVLRNFKTQNILFNEENV-----AKWFDFLLSISIPEGETHI-----TTDRVIGTRGYSAPEYISICVLNEKSNVFSF  156 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~-----~~l~df~~~~~~~~~~~~~-----~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~  156 (241)
                      .+++||||||+|||++.++.     ++|+|||++..........     ......||+.|+|||++.+..++.++|||||
T Consensus       124 ~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~sl  203 (330)
T 2izr_A          124 KNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEAL  203 (330)
T ss_dssp             TTEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHH
T ss_pred             CCeeccCCCHHHeeeccCCCCCCceEEEEEcccceeeecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHH
Confidence            99999999999999998887     9999999998754432211     1234578999999999999999999999999


Q ss_pred             HHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCC
Q 044022          157 GAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDR  236 (241)
Q Consensus       157 G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~R  236 (241)
                      |+++|+|++|..||......      ...+............  +......        .. +.+.+++..||+.||.+|
T Consensus       204 G~il~ell~g~~Pf~~~~~~------~~~~~~~~i~~~~~~~--~~~~~~~--------~~-p~~~~li~~~l~~~p~~R  266 (330)
T 2izr_A          204 GHMFMYFLRGSLPWQGLKAD------TLKERYQKIGDTKRAT--PIEVLCE--------NF-PEMATYLRYVRRLDFFEK  266 (330)
T ss_dssp             HHHHHHHHHSSCTTTTCCCS------SHHHHHHHHHHHHHHS--CHHHHTT--------TC-HHHHHHHHHHHHCCTTCC
T ss_pred             HHHHHHHhcCCCCccccccc------cHHHHHHHHHhhhccC--CHHHHhc--------cC-hHHHHHHHHHHhCCCCCC
Confidence            99999999999999653211      1111111111111000  0000000        12 278999999999999999


Q ss_pred             CCCC
Q 044022          237 PTMV  240 (241)
Q Consensus       237 pt~~  240 (241)
                      ||++
T Consensus       267 P~~~  270 (330)
T 2izr_A          267 PDYD  270 (330)
T ss_dssp             CCHH
T ss_pred             CCHH
Confidence            9975

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=100.00  E-value=7e-39  Score=258.58  Aligned_cols=203  Identities=22%  Similarity=0.287  Sum_probs=158.8

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ..+.+.+|+.++++++||||+++++++...+..++||||+++++|.+++....    .....++.+++.||.|||   +.
T Consensus        49 ~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH---~~  125 (304)
T 2jam_A           49 RDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQLVSGGELFDRILERGVYTEKDASLVIQQVLSAVKYLH---EN  125 (304)
T ss_dssp             ---HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHH---HT
T ss_pred             chHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEEcCCCccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HC
Confidence            34678899999999999999999999999999999999999999999875432    246789999999999999   89


Q ss_pred             CceeccCCCCCeee---cCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHH
Q 044022           88 PIVLRNFKTQNILF---NEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        88 ~ivh~dl~~~nil~---~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~  164 (241)
                      +++|+||||+||++   +.++.++|+|||.+........    ....+++.|+|||.+.+..++.++||||||+++|+|+
T Consensus       126 ~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~  201 (304)
T 2jam_A          126 GIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNGIM----STACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILL  201 (304)
T ss_dssp             TCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCCBTT----HHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHH
T ss_pred             CccccCCCHHHEEEecCCCCCCEEEccCCcceecCCCcc----ccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHH
Confidence            99999999999999   7889999999999865433221    2345899999999999889999999999999999999


Q ss_pred             hcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          165 AGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       165 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +|..||....         ..+...... .+.. ... .....        ..+..+.+++.+||+.||++|||++|
T Consensus       202 ~g~~pf~~~~---------~~~~~~~i~-~~~~-~~~-~~~~~--------~~~~~~~~li~~~l~~dp~~Rps~~~  258 (304)
T 2jam_A          202 CGYPPFYEET---------ESKLFEKIK-EGYY-EFE-SPFWD--------DISESAKDFICHLLEKDPNERYTCEK  258 (304)
T ss_dssp             HSSCTTTTSC---------HHHHHHHHH-HCCC-CCC-TTTTT--------TSCHHHHHHHHHHHCSSTTTSCCHHH
T ss_pred             HCCCCCCCCC---------HHHHHHHHH-cCCC-CCC-ccccc--------cCCHHHHHHHHHHcCCChhHCcCHHH
Confidence            9999996521         111122211 1111 111 11111        12257899999999999999999753

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=100.00  E-value=4e-39  Score=278.35  Aligned_cols=203  Identities=20%  Similarity=0.272  Sum_probs=162.6

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC---c---hHHHHHHHHHHHhchhhcC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP---L---PRLKIASDIVNSLAYLHFG   84 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~---~---~~~~~~~~i~~~l~~lh~~   84 (241)
                      .....+.+|++++++++||||+++++++...+..++||||++||+|.+++....   .   ....++.+|+.||.|||  
T Consensus       226 ~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVmEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH--  303 (576)
T 2acx_A          226 KGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLH--  303 (576)
T ss_dssp             TCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEEEEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH--
Confidence            456778999999999999999999999999999999999999999999886542   1   46788999999999999  


Q ss_pred             CCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHH
Q 044022           85 FPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        85 ~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~  164 (241)
                       +++|+||||||+|||++.++.+||+|||++.........   ....||+.|+|||++.+..++.++||||||+++|+|+
T Consensus       304 -~~gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~~~~~---~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLl  379 (576)
T 2acx_A          304 -RERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTI---KGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMI  379 (576)
T ss_dssp             -HTTEECCCCCGGGEEECTTSCEEECCCTTCEECCTTCCE---ECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHH
T ss_pred             -HCCEeccCCchheEEEeCCCCeEEEecccceecccCccc---cccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHH
Confidence             899999999999999999999999999999876544321   2347999999999999888999999999999999999


Q ss_pred             hcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCC
Q 044022          165 AGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM  239 (241)
Q Consensus       165 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~  239 (241)
                      +|..||......     ....+.. ........      ....        ..+..+.+|+.+||+.||++||++
T Consensus       380 tG~~PF~~~~~~-----~~~~~i~-~~i~~~~~------~~p~--------~~s~~~~dLI~~lL~~dP~~R~g~  434 (576)
T 2acx_A          380 AGQSPFQQRKKK-----IKREEVE-RLVKEVPE------EYSE--------RFSPQARSLCSQLLCKDPAERLGC  434 (576)
T ss_dssp             HSSCSSSCSSSC-----CCHHHHH-HHHHHCCC------CCCT--------TSCHHHHHHHHHHTCSSGGGSTTC
T ss_pred             hCCCCCcccccc-----hhHHHHH-HHhhcccc------cCCc--------cCCHHHHHHHHHhccCCHHHcCCC
Confidence            999999652211     0111111 11111110      1111        122578999999999999999953

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=100.00  E-value=4.8e-39  Score=257.45  Aligned_cols=203  Identities=20%  Similarity=0.310  Sum_probs=161.7

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC---c---hHHHHHHHHHHHhchhhcCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP---L---PRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~---~---~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ..+.+.+|++++++++||||+++++++...+..++||||+++++|.+++....   .   ....++.+++.||.|||   
T Consensus        52 ~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---  128 (288)
T 3kfa_A           52 EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---  128 (288)
T ss_dssp             HHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEEEEcCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHH---
Confidence            46789999999999999999999999999999999999999999999986532   1   46788999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~  165 (241)
                      +.+++|+||||+||+++.++.++|+|||.+........ .......+++.|+|||.+.+..++.++||||||+++|+|++
T Consensus       129 ~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~  207 (288)
T 3kfa_A          129 KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTY-TAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT  207 (288)
T ss_dssp             HHTCCCSCCSGGGEEECGGGCEEECCCCGGGTSCSSSS-EEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHT
T ss_pred             HCCccCCCCCcceEEEcCCCCEEEccCccceeccCCcc-ccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHh
Confidence            89999999999999999999999999999976654332 22233456788999999998899999999999999999999


Q ss_pred             -cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          166 -GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       166 -g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                       |..||......         .......... ..     ....        ..++.+.+++.+||+.||++|||++|
T Consensus       208 ~g~~p~~~~~~~---------~~~~~~~~~~-~~-----~~~~--------~~~~~l~~li~~~l~~dp~~Rps~~~  261 (288)
T 3kfa_A          208 YGMSPYPGIDLS---------QVYELLEKDY-RM-----ERPE--------GCPEKVYELMRACWQWNPSDRPSFAE  261 (288)
T ss_dssp             TSCCSSTTCCGG---------GHHHHHHTTC-CC-----CCCT--------TCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             CCCCCCCCCCHH---------HHHHHHhccC-CC-----CCCC--------CCCHHHHHHHHHHhCCChhhCcCHHH
Confidence             99998552111         1111111111 10     1111        12257899999999999999999853

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=100.00  E-value=9.2e-39  Score=258.85  Aligned_cols=197  Identities=16%  Similarity=0.117  Sum_probs=150.7

Q ss_pred             cHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHHHhchhhcCC
Q 044022           12 TYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ....+.+|+..+.++ +||||++++++|...+..++||||+ +++|.+++....     ..+..++.+++.||.|||   
T Consensus        99 ~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---  174 (311)
T 3p1a_A           99 DRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQTELC-GPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLH---  174 (311)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC-CCBHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEEecc-CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            344566677666666 9999999999999999999999999 579988875432     146789999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~  165 (241)
                      +.+++||||||+|||++.++.+||+|||++........   .....||+.|+|||++.+ .++.++||||||+++|+|++
T Consensus       175 ~~~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~~~~---~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~  250 (311)
T 3p1a_A          175 SQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGA---GEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVAC  250 (311)
T ss_dssp             HTTEECCCCSGGGEEECGGGCEEECCCTTCEECC---------CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHH
T ss_pred             HCCEecCCCCHHHEEECCCCCEEEccceeeeecccCCC---CcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHh
Confidence            89999999999999999999999999999876644322   233468999999999875 78999999999999999999


Q ss_pred             cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          166 GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       166 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      |..|+....            ..... ..+    ...+....        ..++.+.+++.+||+.||++|||++|
T Consensus       251 g~~~~~~~~------------~~~~~-~~~----~~~~~~~~--------~~~~~l~~li~~~L~~dP~~Rpt~~e  301 (311)
T 3p1a_A          251 NMELPHGGE------------GWQQL-RQG----YLPPEFTA--------GLSSELRSVLVMMLEPDPKLRATAEA  301 (311)
T ss_dssp             TCCCCSSHH------------HHHHH-TTT----CCCHHHHT--------TSCHHHHHHHHHHSCSSTTTSCCHHH
T ss_pred             CCCCCCCcc------------HHHHH-hcc----CCCccccc--------CCCHHHHHHHHHHcCCChhhCcCHHH
Confidence            976654310            00111 111    11111111        22367899999999999999999853

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.4e-38  Score=263.35  Aligned_cols=153  Identities=20%  Similarity=0.251  Sum_probs=133.6

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCC------cceEEEEecCCCCHHHhhcCCCc---hHHHHHHHHHHHhchh
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTP------IPILVFQSVEYGTLRDCIFGAPL---PRLKIASDIVNSLAYL   81 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~------~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~i~~~l~~l   81 (241)
                      ...+++.+|++++++++||||+++++++...+      ..++||||+ +++|.+++.....   ....++.|++.||.||
T Consensus        66 ~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~l~~~~~~~~~~qi~~~L~~L  144 (367)
T 1cm8_A           66 LFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFM-GTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYI  144 (367)
T ss_dssp             HHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCCCCEEEEECC-SEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCceEEEEEecC-CCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            34567899999999999999999999998653      469999999 7899999876433   4677899999999999


Q ss_pred             hcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc-cCCCcchhhHHHHHHH
Q 044022           82 HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI-CVLNEKSNVFSFGAFL  160 (241)
Q Consensus        82 h~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~~  160 (241)
                      |   +.+++||||||+||+++.++.+||+|||++.......     ....+|+.|+|||++.+ ..++.++||||+||++
T Consensus       145 H---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~-----~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il  216 (367)
T 1cm8_A          145 H---AAGIIHRDLKPGNLAVNEDCELKILDFGLARQADSEM-----TGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIM  216 (367)
T ss_dssp             H---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECCSSC-----CSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHH
T ss_pred             H---HCCccccCcCHHHEEEcCCCCEEEEeeeccccccccc-----CcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHH
Confidence            9   8999999999999999999999999999998754322     33468999999999887 6789999999999999


Q ss_pred             HHHHhcCccccc
Q 044022          161 FELLAGRIHIWD  172 (241)
Q Consensus       161 ~~~~~g~~p~~~  172 (241)
                      |+|++|+.||..
T Consensus       217 ~ell~g~~pf~~  228 (367)
T 1cm8_A          217 AEMITGKTLFKG  228 (367)
T ss_dssp             HHHHHSSCSSCC
T ss_pred             HHHHhCCCCCCC
Confidence            999999999964

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=100.00  E-value=5.7e-39  Score=276.05  Aligned_cols=204  Identities=24%  Similarity=0.264  Sum_probs=161.1

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ...+.+.+|+.++++++||||+++++++...+..++||||+++|+|.+++....    ..+..++.+++.||.|||   +
T Consensus        88 ~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH---~  164 (504)
T 3q5i_A           88 KFHEEIYNEISLLKSLDHPNIIKLFDVFEDKKYFYLVTEFYEGGELFEQIINRHKFDECDAANIMKQILSGICYLH---K  164 (504)
T ss_dssp             CTHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHH---H
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            346779999999999999999999999999999999999999999999875432    256789999999999999   8


Q ss_pred             CCceeccCCCCCeeecCCC---CeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHH
Q 044022           87 RPIVLRNFKTQNILFNEEN---VAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL  163 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~---~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~  163 (241)
                      .+++||||||+|||++.++   .+||+|||++........   .....||+.|+|||++. ..++.++||||+|+++|+|
T Consensus       165 ~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~l  240 (504)
T 3q5i_A          165 HNIVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDYK---LRDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIMYIL  240 (504)
T ss_dssp             TTEECSCCSGGGEEESSTTCCSSEEECCCTTCEECCTTSC---BCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHH
T ss_pred             CCeEeCCCcHHHEEEecCCCCccEEEEECCCCEEcCCCCc---cccccCCcCCCCHHHhc-cCCCchHHHHHHHHHHHHH
Confidence            9999999999999998776   699999999987654432   13346899999999987 5689999999999999999


Q ss_pred             HhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          164 LAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       164 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ++|..||...         ...+......... ..  ..        .......+..+.+|+.+||+.||++|||++|
T Consensus       241 l~g~~pf~~~---------~~~~~~~~i~~~~-~~--~~--------~~~~~~~s~~~~~li~~~L~~dp~~R~t~~e  298 (504)
T 3q5i_A          241 LCGYPPFGGQ---------NDQDIIKKVEKGK-YY--FD--------FNDWKNISDEAKELIKLMLTYDYNKRCTAEE  298 (504)
T ss_dssp             HHSSCSSCCS---------SHHHHHHHHHHCC-CC--CC--------HHHHTTSCHHHHHHHHHHTCSSTTTSCCHHH
T ss_pred             HhCCCCCCCC---------CHHHHHHHHHcCC-CC--CC--------ccccCCCCHHHHHHHHHHcCCChhHCCCHHH
Confidence            9999999652         1122222222111 10  00        0000122367899999999999999999853

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=100.00  E-value=7.7e-39  Score=255.63  Aligned_cols=204  Identities=19%  Similarity=0.271  Sum_probs=159.2

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ..+.+.+|+.++++++||||+++++++...+..++||||+++++|.+++....    .....++.+++.||.|||   +.
T Consensus        51 ~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH---~~  127 (283)
T 3bhy_A           51 SREEIEREVNILREIRHPNIITLHDIFENKTDVVLILELVSGGELFDFLAEKESLTEDEATQFLKQILDGVHYLH---SK  127 (283)
T ss_dssp             CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---HT
T ss_pred             HHHHHHHHHHHHHhCCCCCeeehhheecCCCeEEEEEeecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hC
Confidence            46789999999999999999999999999999999999999999999986432    257789999999999999   89


Q ss_pred             CceeccCCCCCeeecCCC----CeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHH
Q 044022           88 PIVLRNFKTQNILFNEEN----VAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL  163 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~----~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~  163 (241)
                      +++|+||||+||+++.++    .++|+|||.+.........   ....+++.|+|||.+.+..++.++||||||+++|+|
T Consensus       128 ~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l  204 (283)
T 3bhy_A          128 RIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAGNEF---KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYIL  204 (283)
T ss_dssp             TEECSCCSGGGEEESCSSSSSCCEEECCCTTCEECC-----------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHH
T ss_pred             CccCCCCChHHEEEecCCCCCCceEEEecccceeccCCCcc---cccCCCcCccCcceecCCCCCcchhhhhHHHHHHHH
Confidence            999999999999998877    8999999999876543221   234688999999999988899999999999999999


Q ss_pred             HhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          164 LAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       164 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ++|..||....         ..+....... ...  ........        ..+..+.+++.+||+.||++|||++|
T Consensus       205 ~~g~~p~~~~~---------~~~~~~~~~~-~~~--~~~~~~~~--------~~~~~~~~li~~~l~~dp~~Rps~~~  262 (283)
T 3bhy_A          205 LSGASPFLGET---------KQETLTNISA-VNY--DFDEEYFS--------NTSELAKDFIRRLLVKDPKRRMTIAQ  262 (283)
T ss_dssp             HHSSCTTCCSS---------HHHHHHHHHT-TCC--CCCHHHHT--------TCCHHHHHHHHTTSCSSGGGSCCHHH
T ss_pred             HHCCCCCCCcc---------hHHHHHHhHh-ccc--CCcchhcc--------cCCHHHHHHHHHHccCCHhHCcCHHH
Confidence            99999995421         1111111111 100  00101111        22357889999999999999999753

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=100.00  E-value=1e-39  Score=266.15  Aligned_cols=215  Identities=23%  Similarity=0.256  Sum_probs=161.9

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeee--eCCcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHHHhchhhc
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCL--QTPIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVNSLAYLHF   83 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~--~~~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~~l~~lh~   83 (241)
                      ...+.+.+|++++++++||||+++++++.  ..+..++||||+++++|.+++....     ..+..++.+++.||.||| 
T Consensus        66 ~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH-  144 (327)
T 3lxl_A           66 DQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLG-  144 (327)
T ss_dssp             HHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEEEEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceEEEEEeecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH-
Confidence            34567899999999999999999999987  4456899999999999999986521     256789999999999999 


Q ss_pred             CCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcc-eeecccccCCCccCcccccccCCCcchhhHHHHHHHHH
Q 044022           84 GFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH-ITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFE  162 (241)
Q Consensus        84 ~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~-~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~  162 (241)
                        +.+++|+||||+||+++.++.++|+|||.+......... .......++..|+|||.+.+..++.++||||||+++|+
T Consensus       145 --~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~  222 (327)
T 3lxl_A          145 --SRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYE  222 (327)
T ss_dssp             --HTTEECSCCSGGGEEEEETTEEEECCGGGCEECCTTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHH
T ss_pred             --hCCccCCCCChhhEEECCCCCEEEcccccceecccCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHH
Confidence              899999999999999999999999999999876544322 22233457788999999998889999999999999999


Q ss_pred             HHhcCcccccccccC-----CCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCC
Q 044022          163 LLAGRIHIWDLLKDT-----HDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRP  237 (241)
Q Consensus       163 ~~~g~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rp  237 (241)
                      |++|..||.......     .................+.....     ..        ..++.+.+++.+||+.||++||
T Consensus       223 ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--------~~~~~l~~li~~~l~~dP~~Rp  289 (327)
T 3lxl_A          223 LFTYCDKSCSPSAEFLRMMGCERDVPALSRLLELLEEGQRLPA-----PP--------ACPAEVHELMKLCWAPSPQDRP  289 (327)
T ss_dssp             HHTTTCGGGSHHHHHHHHCC----CCHHHHHHHHHHTTCCCCC-----CT--------TCCHHHHHHHHHHTCSSGGGSC
T ss_pred             HHhCCCCCccccchhhhhcccccccccHHHHHHHhhcccCCCC-----CC--------cccHHHHHHHHHHcCCChhhCc
Confidence            999999986522110     00000000111111111111111     11        2236789999999999999999


Q ss_pred             CCCC
Q 044022          238 TMVD  241 (241)
Q Consensus       238 t~~e  241 (241)
                      |++|
T Consensus       290 s~~e  293 (327)
T 3lxl_A          290 SFSA  293 (327)
T ss_dssp             CHHH
T ss_pred             CHHH
Confidence            9853

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=100.00  E-value=7.9e-39  Score=268.15  Aligned_cols=157  Identities=20%  Similarity=0.196  Sum_probs=125.6

Q ss_pred             HHHHHHHHHHHHhcCCCcccceeeeeee--CCcceEEEEecCCCCHHHhhcCC-------------CchHHHHHHHHHHH
Q 044022           13 YGSCINNITYAAQMSHNHILKRIGCCLQ--TPIPILVFQSVEYGTLRDCIFGA-------------PLPRLKIASDIVNS   77 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~--~~~~~lv~e~~~~~sL~~~l~~~-------------~~~~~~~~~~i~~~   77 (241)
                      ...+.+|++++++++||||+++++++..  ....++||||+. ++|.+++...             ...+..++.||+.|
T Consensus        62 ~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~a  140 (405)
T 3rgf_A           62 SMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDG  140 (405)
T ss_dssp             CHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEEEEECCS-EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEEEEeCCC-CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHH
Confidence            4578899999999999999999999964  568899999996 6888877521             11467899999999


Q ss_pred             hchhhcCCCCCceeccCCCCCeee----cCCCCeEEeeccCceecCCCCc-ceeecccccCCCccCccccccc-CCCcch
Q 044022           78 LAYLHFGFPRPIVLRNFKTQNILF----NEENVAKWFDFLLSISIPEGET-HITTDRVIGTRGYSAPEYISIC-VLNEKS  151 (241)
Q Consensus        78 l~~lh~~~~~~ivh~dl~~~nil~----~~~~~~~l~df~~~~~~~~~~~-~~~~~~~~~~~~~~aPE~~~~~-~~~~~~  151 (241)
                      |.|||   +.+|+||||||+|||+    +.++.+||+|||++........ ........||+.|+|||++.+. .++.++
T Consensus       141 l~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~  217 (405)
T 3rgf_A          141 IHYLH---ANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAI  217 (405)
T ss_dssp             HHHHH---HTTCCCCCCCGGGEEECCSSTTTTCEEECCTTCCC----------------CCCTTCCHHHHTTCCSCCHHH
T ss_pred             HHHHH---hCCEeCCCcCHHHeEEecCCCCCCcEEEEECCCceecCCCCcccccCCCceecCcccCchhhcCCCcccchh
Confidence            99999   8999999999999999    6778999999999976543211 1222345789999999999874 589999


Q ss_pred             hhHHHHHHHHHHHhcCcccccc
Q 044022          152 NVFSFGAFLFELLAGRIHIWDL  173 (241)
Q Consensus       152 Di~s~G~~~~~~~~g~~p~~~~  173 (241)
                      |||||||++|+|++|+.||...
T Consensus       218 DiwSlG~il~ell~g~~pf~~~  239 (405)
T 3rgf_A          218 DIWAIGCIFAELLTSEPIFHCR  239 (405)
T ss_dssp             HHHHHHHHHHHHHHSSCTTCCC
T ss_pred             hhHHHHHHHHHHHhCCCCCCCc
Confidence            9999999999999999999653

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=100.00  E-value=4.9e-39  Score=269.29  Aligned_cols=202  Identities=16%  Similarity=0.182  Sum_probs=157.5

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC--Cc---hHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA--PL---PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~--~~---~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ....+.+|..++.+++||||+++++++...+..|+||||+++|+|.+++...  ..   ....++.+|+.||.|||   +
T Consensus       104 ~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~~~lVmE~~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~LH---~  180 (412)
T 2vd5_A          104 EVSCFREERDVLVNGDRRWITQLHFAFQDENYLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVH---R  180 (412)
T ss_dssp             GGCCHHHHHHHHHHSCTTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHH---H
T ss_pred             HHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEcCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            4556889999999999999999999999999999999999999999998652  12   45678999999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccc-------ccCCCcchhhHHHHHH
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYIS-------ICVLNEKSNVFSFGAF  159 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~-------~~~~~~~~Di~s~G~~  159 (241)
                      .+|+||||||+|||++.++.+||+|||++......... ......||+.|+|||++.       ...++.++|+||||++
T Consensus       181 ~giiHrDLKp~NILld~~g~vkL~DFGla~~~~~~~~~-~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvi  259 (412)
T 2vd5_A          181 LGYVHRDIKPDNILLDRCGHIRLADFGSCLKLRADGTV-RSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVF  259 (412)
T ss_dssp             TTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTSCE-ECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHH
T ss_pred             CCeeecccCHHHeeecCCCCEEEeechhheeccCCCcc-ccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHH
Confidence            99999999999999999999999999999876544322 223457999999999997       3568899999999999


Q ss_pred             HHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCC
Q 044022          160 LFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRP  237 (241)
Q Consensus       160 ~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rp  237 (241)
                      +|+|++|+.||....         ..+..............  +....        ..+..+.+|+.+||. +|.+|+
T Consensus       260 lyelltG~~Pf~~~~---------~~~~~~~i~~~~~~~~~--p~~~~--------~~s~~~~dli~~lL~-~p~~Rl  317 (412)
T 2vd5_A          260 AYEMFYGQTPFYADS---------TAETYGKIVHYKEHLSL--PLVDE--------GVPEEARDFIQRLLC-PPETRL  317 (412)
T ss_dssp             HHHHHHSSCTTCCSS---------HHHHHHHHHTHHHHCCC--C------------CCCHHHHHHHHTTSS-CGGGCT
T ss_pred             HHHHHhCCCCCCCCC---------HHHHHHHHHhcccCcCC--Ccccc--------CCCHHHHHHHHHHcC-ChhhcC
Confidence            999999999996521         11222222211110111  11111        122578999999999 999985

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=100.00  E-value=2.4e-38  Score=267.33  Aligned_cols=167  Identities=19%  Similarity=0.218  Sum_probs=133.1

Q ss_pred             Ccccccccc-cccHHHHHHHHHHHHhcCCCcccceeeeeeeC-----CcceEEEEecCCCCHHHhhcCCCc----hHHHH
Q 044022            1 MKFYGHEYH-RHTYGSCINNITYAAQMSHNHILKRIGCCLQT-----PIPILVFQSVEYGTLRDCIFGAPL----PRLKI   70 (241)
Q Consensus         1 iK~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-----~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~   70 (241)
                      ||.+..... ....+++.+|++++++++||||+++++++...     +..|+||||+. ++|.+++.....    ....+
T Consensus        56 iK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~~~l~~~~~~~i  134 (432)
T 3n9x_A           56 IKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDELYIVLEIAD-SDLKKLFKTPIFLTEEHIKTI  134 (432)
T ss_dssp             EEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCEEEEEECCS-EEHHHHHHSSCCCCHHHHHHH
T ss_pred             EEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCeEEEEEecCC-cCHHHHHhccCCCCHHHHHHH
Confidence            354443322 23467899999999999999999999999866     56899999996 699999876532    46789


Q ss_pred             HHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcc--------------------eeeccc
Q 044022           71 ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH--------------------ITTDRV  130 (241)
Q Consensus        71 ~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~--------------------~~~~~~  130 (241)
                      +.||+.||.|||   +.+++||||||+|||++.++.+||+|||+++........                    ......
T Consensus       135 ~~qil~aL~~LH---~~givHrDlkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (432)
T 3n9x_A          135 LYNLLLGENFIH---ESGIIHRDLKPANCLLNQDCSVKVCDFGLARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSH  211 (432)
T ss_dssp             HHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEEC-------------------------------C
T ss_pred             HHHHHHHHHHHH---HCCCCCCCCCHHHeEECCCCCEEEccCCCcccccccccccccccccccccccccccchhccccCC
Confidence            999999999999   899999999999999999999999999999876443211                    112456


Q ss_pred             ccCCCccCcccc-cccCCCcchhhHHHHHHHHHHHhcCcccc
Q 044022          131 IGTRGYSAPEYI-SICVLNEKSNVFSFGAFLFELLAGRIHIW  171 (241)
Q Consensus       131 ~~~~~~~aPE~~-~~~~~~~~~Di~s~G~~~~~~~~g~~p~~  171 (241)
                      +||+.|+|||++ ....++.++|||||||++|+|++|..||.
T Consensus       212 ~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~  253 (432)
T 3n9x_A          212 VVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHI  253 (432)
T ss_dssp             CCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTTC
T ss_pred             CCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhcccccc
Confidence            789999999986 45568999999999999999998665553

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=100.00  E-value=1.4e-38  Score=259.54  Aligned_cols=214  Identities=19%  Similarity=0.220  Sum_probs=162.2

Q ss_pred             ccccccc-ccccHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC------chHHHHHHH
Q 044022            2 KFYGHEY-HRHTYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP------LPRLKIASD   73 (241)
Q Consensus         2 K~~~~~~-~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~------~~~~~~~~~   73 (241)
                      |++.... .......+.+|+.+++++ .||||+++++++...+..++||||+++|+|.+++....      ..+..++.+
T Consensus        60 K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~q  139 (327)
T 3lm5_A           60 KFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTSEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQ  139 (327)
T ss_dssp             EEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHH
T ss_pred             EEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCCeEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHH
Confidence            4444322 234567899999999999 56999999999999999999999999999999986531      146789999


Q ss_pred             HHHHhchhhcCCCCCceeccCCCCCeeecC---CCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcc
Q 044022           74 IVNSLAYLHFGFPRPIVLRNFKTQNILFNE---ENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEK  150 (241)
Q Consensus        74 i~~~l~~lh~~~~~~ivh~dl~~~nil~~~---~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~  150 (241)
                      ++.||.|||   +.+++||||||+||+++.   ++.++|+|||.+........   .....|++.|+|||++.+..++.+
T Consensus       140 l~~~L~~LH---~~givH~Dikp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~  213 (327)
T 3lm5_A          140 ILEGVYYLH---QNNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHACE---LREIMGTPEYLAPEILNYDPITTA  213 (327)
T ss_dssp             HHHHHHHHH---HTTEECSCCCGGGEEESCBTTBCCEEECCGGGCEEC------------CCCGGGCCHHHHTTCCCCTH
T ss_pred             HHHHHHHHH---HCCeecCcCChHHEEEecCCCCCcEEEeeCccccccCCccc---cccccCCcCccCCeeecCCCCCch
Confidence            999999999   899999999999999988   78999999999987654322   123468999999999998899999


Q ss_pred             hhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhcc
Q 044022          151 SNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVN  230 (241)
Q Consensus       151 ~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~  230 (241)
                      +||||||+++|+|++|+.||....         ..+......... . .... ....        ..+..+.+++.+||+
T Consensus       214 ~DiwslG~il~~ll~g~~pf~~~~---------~~~~~~~i~~~~-~-~~~~-~~~~--------~~~~~~~~li~~~L~  273 (327)
T 3lm5_A          214 TDMWNIGIIAYMLLTHTSPFVGED---------NQETYLNISQVN-V-DYSE-ETFS--------SVSQLATDFIQSLLV  273 (327)
T ss_dssp             HHHHHHHHHHHHHHHSSCSSCCSS---------HHHHHHHHHHTC-C-CCCT-TTTT--------TSCHHHHHHHHHHSC
T ss_pred             hhHHHHHHHHHHHHhCCCCCCCCC---------chHHHHHHHhcc-c-ccCc-hhhc--------ccCHHHHHHHHHHcC
Confidence            999999999999999999995421         111111111111 0 0111 1111        123578899999999


Q ss_pred             CCCCCCCCCCC
Q 044022          231 NSPEDRPTMVD  241 (241)
Q Consensus       231 ~~p~~Rpt~~e  241 (241)
                      .||++|||++|
T Consensus       274 ~dP~~Rpt~~~  284 (327)
T 3lm5_A          274 KNPEKRPTAEI  284 (327)
T ss_dssp             SSGGGSCCHHH
T ss_pred             CChhhCcCHHH
Confidence            99999999853

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=100.00  E-value=1.3e-38  Score=257.77  Aligned_cols=204  Identities=16%  Similarity=0.152  Sum_probs=150.6

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ..+.+.+|+.++++++||||+++++++...+..++|+||+++++|.+++....    .....++.+++.||.|||   +.
T Consensus        77 ~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH---~~  153 (309)
T 2h34_A           77 FRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVDMRLINGVDLAAMLRRQGPLAPPRAVAIVRQIGSALDAAH---AA  153 (309)
T ss_dssp             HHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCCCEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHH---HT
T ss_pred             HHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEEEEEecCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HC
Confidence            35778999999999999999999999999999999999999999999986532    256789999999999999   89


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcC
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR  167 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~  167 (241)
                      +++|+||||+||+++.++.++|+|||.+......... ......+++.|+|||.+.+..++.++||||||+++|+|++|+
T Consensus       154 ~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~  232 (309)
T 2h34_A          154 GATHRDVKPENILVSADDFAYLVDFGIASATTDEKLT-QLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGS  232 (309)
T ss_dssp             TCCCSCCCGGGEEECTTSCEEECSCCC-----------------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSS
T ss_pred             cCCcCCCChHHEEEcCCCCEEEecCccCccccccccc-cccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCC
Confidence            9999999999999999999999999998765443211 123346889999999999888999999999999999999999


Q ss_pred             cccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCC-CCC
Q 044022          168 IHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRP-TMV  240 (241)
Q Consensus       168 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rp-t~~  240 (241)
                      .||....         . ............   .........        +..+.+++.+||+.||++|| |++
T Consensus       233 ~pf~~~~---------~-~~~~~~~~~~~~---~~~~~~~~~--------~~~l~~li~~~l~~dP~~Rp~s~~  285 (309)
T 2h34_A          233 PPYQGDQ---------L-SVMGAHINQAIP---RPSTVRPGI--------PVAFDAVIARGMAKNPEDRYVTCG  285 (309)
T ss_dssp             CSSCSCH---------H-HHHHHHHHSCCC---CGGGTSTTC--------CTHHHHHHHHHTCSSGGGSCSSHH
T ss_pred             CCCCCch---------H-HHHHHHhccCCC---CccccCCCC--------CHHHHHHHHHhccCCHHHHHHhHH
Confidence            9995411         1 111111111100   011111222        24688999999999999999 553

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=100.00  E-value=1.3e-38  Score=260.39  Aligned_cols=220  Identities=18%  Similarity=0.229  Sum_probs=154.3

Q ss_pred             HHHHHHHHHHH--HhcCCCcccceeeeeee-----CCcceEEEEecCCCCHHHhhcCCCc---hHHHHHHHHHHHhchhh
Q 044022           13 YGSCINNITYA--AQMSHNHILKRIGCCLQ-----TPIPILVFQSVEYGTLRDCIFGAPL---PRLKIASDIVNSLAYLH   82 (241)
Q Consensus        13 ~~~~~~e~~~l--~~l~h~~iv~~~~~~~~-----~~~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~i~~~l~~lh   82 (241)
                      ...+..|.+++  ..++||||+++++.+..     ...+++||||+++|+|.+++.....   ....++.+++.||.|||
T Consensus        49 ~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~qi~~~L~~LH  128 (336)
T 3g2f_A           49 RQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSLHTSDWVSSCRLAHSVTRGLAYLH  128 (336)
T ss_dssp             HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEEEEEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHhccCcchhhheecccccccCCCceEEEEEecCCCCcHHHHHhhcccchhHHHHHHHHHHHHHHHHH
Confidence            44555555554  45899999999986543     2357899999999999999976543   46789999999999999


Q ss_pred             cCCCC---------CceeccCCCCCeeecCCCCeEEeeccCceecCCCCc------ceeecccccCCCccCcccccc---
Q 044022           83 FGFPR---------PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGET------HITTDRVIGTRGYSAPEYISI---  144 (241)
Q Consensus        83 ~~~~~---------~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~------~~~~~~~~~~~~~~aPE~~~~---  144 (241)
                         +.         +++||||||+|||++.++.+||+|||++........      ........||+.|+|||++.+   
T Consensus       129 ---~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  205 (336)
T 3g2f_A          129 ---TELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVN  205 (336)
T ss_dssp             ---CCBCCGGGCBCCEECSSCSGGGEEECTTSCEEECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCC
T ss_pred             ---hhhccccccccceeecccccceEEEcCCCcEEEeeccceeecccccccCccccccccccCCCccceeCchhhcCCcc
Confidence               77         999999999999999999999999999987653221      111224568999999999986   


Q ss_pred             ----cCCCcchhhHHHHHHHHHHHhcCcccccccccCCCcccc--------hHHHHHHHhhhcccCCCCCCccccCCCch
Q 044022          145 ----CVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCF--------FNEYLKNYLEDKRFTGIPAPIIVQDIPCI  212 (241)
Q Consensus       145 ----~~~~~~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (241)
                          ..++.++||||||+++|+|++|..||.............        ..+............    +.+....+. 
T Consensus       206 ~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-  280 (336)
T 3g2f_A          206 LRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQR----PKFPEAWKE-  280 (336)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCC----CCCCTTCCC-
T ss_pred             cccccccccccchHHHHHHHHHHHhcCCcCCCccchhHHHHhhhcccCCCchHHHHHhhhcccccC----CCCCccccc-
Confidence                456678999999999999999988875532221111110        011111111111111    111111111 


Q ss_pred             hHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          213 EKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       213 ~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                       ....+..+.+++.+||+.||++|||++|
T Consensus       281 -~~~~~~~l~~li~~cl~~dP~~Rps~~e  308 (336)
T 3g2f_A          281 -NSLAVRSLKETIEDCWDQDAEARLTAQX  308 (336)
T ss_dssp             -CSHHHHHHHHHHHHHSCSSGGGSCCHHH
T ss_pred             -ccchHHHHHHHHHHHhcCChhhCcchHH
Confidence             1245678999999999999999999853

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=100.00  E-value=1.5e-39  Score=264.84  Aligned_cols=165  Identities=19%  Similarity=0.243  Sum_probs=129.9

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHH
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVN   76 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~   76 (241)
                      |++...........+.+|++++++++||||+++++++...+..++||||+. ++|.+++....     .....++.+++.
T Consensus        33 K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~  111 (324)
T 3mtl_A           33 KEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEYLD-KDLKQYLDDCGNIINMHNVKLFLFQLLR  111 (324)
T ss_dssp             EEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEECCS-EEHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred             EEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecccc-cCHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence            444433333333456689999999999999999999999999999999997 69988876532     146778999999


Q ss_pred             HhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc-cCCCcchhhHH
Q 044022           77 SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI-CVLNEKSNVFS  155 (241)
Q Consensus        77 ~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s  155 (241)
                      ||.|||   +.+++||||||+||+++.++.+||+|||.+.........  .....+|+.|+|||++.+ ..++.++||||
T Consensus       112 aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~--~~~~~~t~~y~aPE~~~~~~~~~~~~Diws  186 (324)
T 3mtl_A          112 GLAYCH---RQKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKT--YDNEVVTLWYRPPDILLGSTDYSTQIDMWG  186 (324)
T ss_dssp             HHHHHH---HTTEEESSCCGGGEEECTTCCEEECSSSEEECC--------------CGGGCCHHHHTTCCCCCTHHHHHH
T ss_pred             HHHHHH---HCCccCCCcCHHHEEECCCCCEEEccCcccccccCCccc--cccccCcccccChhhhcCCCCCCcHHHHHH
Confidence            999999   899999999999999999999999999998755433221  123467899999999876 56899999999


Q ss_pred             HHHHHHHHHhcCccccc
Q 044022          156 FGAFLFELLAGRIHIWD  172 (241)
Q Consensus       156 ~G~~~~~~~~g~~p~~~  172 (241)
                      ||+++|+|++|+.||..
T Consensus       187 lG~il~~l~~g~~pf~~  203 (324)
T 3mtl_A          187 VGCIFYEMATGRPLFPG  203 (324)
T ss_dssp             HHHHHHHHHHSSCSCCC
T ss_pred             HHHHHHHHHhCCCCCCC
Confidence            99999999999999965

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=100.00  E-value=8e-39  Score=262.77  Aligned_cols=212  Identities=18%  Similarity=0.203  Sum_probs=158.1

Q ss_pred             HHHHHHHHHHHHhcCCCcccceeeeeee----CCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcC
Q 044022           13 YGSCINNITYAAQMSHNHILKRIGCCLQ----TPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFG   84 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~----~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~   84 (241)
                      ...+.+|+..++.++||||+++++++..    ....++||||+ +++|.+++....    ..+..++.|++.||.|||  
T Consensus        92 ~~~~~~e~~~~~~l~h~ni~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH--  168 (345)
T 2v62_A           92 KKDCIKKWIERKQLDYLGIPLFYGSGLTEFKGRSYRFMVMERL-GIDLQKISGQNGTFKKSTVLQLGIRMLDVLEYIH--  168 (345)
T ss_dssp             CHHHHHHHHHHHTCSCCCCCCEEEEEEEESSSCEEEEEEEECE-EEEHHHHCBGGGBCCHHHHHHHHHHHHHHHHHHH--
T ss_pred             hhHHHHHHHhhccccccCcceeecccccccCCCcEEEEEEecc-CCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH--
Confidence            3457788999999999999999999987    67899999999 899999987642    257889999999999999  


Q ss_pred             CCCCceeccCCCCCeeecCCC--CeEEeeccCceecCCCCcc-----eeecccccCCCccCcccccccCCCcchhhHHHH
Q 044022           85 FPRPIVLRNFKTQNILFNEEN--VAKWFDFLLSISIPEGETH-----ITTDRVIGTRGYSAPEYISICVLNEKSNVFSFG  157 (241)
Q Consensus        85 ~~~~ivh~dl~~~nil~~~~~--~~~l~df~~~~~~~~~~~~-----~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G  157 (241)
                       +.+++||||||+|||++.++  .+||+|||++.........     .......|+..|+|||++.+..++.++||||||
T Consensus       169 -~~~ivH~Dlkp~NIll~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG  247 (345)
T 2v62_A          169 -ENEYVHGDIKAANLLLGYKNPDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILG  247 (345)
T ss_dssp             -HTTEECSCCSGGGEEEESSSTTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHH
T ss_pred             -hCCeeCCCcCHHHEEEccCCCCcEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHH
Confidence             89999999999999999887  9999999999765432111     111345689999999999988899999999999


Q ss_pred             HHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCC
Q 044022          158 AFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRP  237 (241)
Q Consensus       158 ~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rp  237 (241)
                      +++|+|++|+.||.......    ...........     ...+. .+....+   ....+..+.+++.+||+.||++||
T Consensus       248 ~il~ell~g~~pf~~~~~~~----~~~~~~~~~~~-----~~~~~-~~~~~~~---~~~~~~~l~~li~~~l~~dp~~Rp  314 (345)
T 2v62_A          248 YCMLRWLCGKLPWEQNLKDP----VAVQTAKTNLL-----DELPQ-SVLKWAP---SGSSCCEIAQFLVCAHSLAYDEKP  314 (345)
T ss_dssp             HHHHHHHHSSCTTGGGTTCH----HHHHHHHHHHH-----HTTTH-HHHHHSC---TTSCCHHHHHHHHHHHTCCTTCCC
T ss_pred             HHHHHHHhCCCCcccccccc----HHHHHHHHhhc-----ccccH-HHHhhcc---ccccHHHHHHHHHHHhhcCcccCC
Confidence            99999999999995421110    00000001100     00000 0000000   001225789999999999999999


Q ss_pred             CCCC
Q 044022          238 TMVD  241 (241)
Q Consensus       238 t~~e  241 (241)
                      |++|
T Consensus       315 s~~~  318 (345)
T 2v62_A          315 NYQA  318 (345)
T ss_dssp             CHHH
T ss_pred             CHHH
Confidence            9753

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=100.00  E-value=1.3e-38  Score=255.64  Aligned_cols=205  Identities=22%  Similarity=0.303  Sum_probs=157.0

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-------chHHHHHHHHHHHhchhhc
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-------LPRLKIASDIVNSLAYLHF   83 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-------~~~~~~~~~i~~~l~~lh~   83 (241)
                      ...+.+.+|+.++++++||||+++++++...+..++||||+++++|.+++....       .....++.+++.||.||| 
T Consensus        61 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH-  139 (295)
T 2clq_A           61 RYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLH-  139 (295)
T ss_dssp             ---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCSEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeCCCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHH-
Confidence            456779999999999999999999999999999999999999999999986541       135668899999999999 


Q ss_pred             CCCCCceeccCCCCCeeecC-CCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccC--CCcchhhHHHHHHH
Q 044022           84 GFPRPIVLRNFKTQNILFNE-ENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICV--LNEKSNVFSFGAFL  160 (241)
Q Consensus        84 ~~~~~ivh~dl~~~nil~~~-~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~--~~~~~Di~s~G~~~  160 (241)
                        +.+++|+||||+||+++. ++.++|+|||.+.........  .....+++.|+|||.+.+..  ++.++||||||+++
T Consensus       140 --~~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il  215 (295)
T 2clq_A          140 --DNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINPC--TETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTI  215 (295)
T ss_dssp             --HTTEECCCCSGGGEEEETTTCCEEECCTTTCEESCC-------CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHH
T ss_pred             --hCCEEccCCChhhEEEECCCCCEEEeecccccccCCCCCc--ccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHH
Confidence              899999999999999987 899999999999866543211  13346889999999997653  78999999999999


Q ss_pred             HHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          161 FELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       161 ~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                      |+|++|+.||......       ....... .....     .+.+...        .+..+.+++.+||+.||++|||++
T Consensus       216 ~~l~~g~~pf~~~~~~-------~~~~~~~-~~~~~-----~~~~~~~--------~~~~~~~li~~~l~~dp~~Rps~~  274 (295)
T 2clq_A          216 IEMATGKPPFYELGEP-------QAAMFKV-GMFKV-----HPEIPES--------MSAEAKAFILKCFEPDPDKRACAN  274 (295)
T ss_dssp             HHHHHTSCTTGGGSSH-------HHHHHHH-HHHCC-----CCCCCTT--------SCHHHHHHHHHTTCSSTTTSCCHH
T ss_pred             HHHHHCCCCccCCCch-------hHHHHhh-ccccc-----ccccccc--------CCHHHHHHHHHHccCChhhCCCHH
Confidence            9999999999652111       0111111 01111     1111111        225788999999999999999975


Q ss_pred             C
Q 044022          241 D  241 (241)
Q Consensus       241 e  241 (241)
                      |
T Consensus       275 ~  275 (295)
T 2clq_A          275 D  275 (295)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=100.00  E-value=3.4e-39  Score=263.32  Aligned_cols=166  Identities=20%  Similarity=0.227  Sum_probs=129.2

Q ss_pred             Ccccccccc-cccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHH
Q 044022            1 MKFYGHEYH-RHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIV   75 (241)
Q Consensus         1 iK~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~   75 (241)
                      ||++..+.. ....+.+.+|++++++++||||+++++++...+..++||||++ ++|.+++.....    ....++.|++
T Consensus        64 iK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~i~~ql~  142 (329)
T 3gbz_A           64 IKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHLIFEYAE-NDLKKYMDKNPDVSMRVIKSFLYQLI  142 (329)
T ss_dssp             EEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEEEEECCS-EEHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred             EEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEEEEecCC-CCHHHHHhhcCCCCHHHHHHHHHHHH
Confidence            355543332 2345678899999999999999999999999999999999997 699999876532    4678999999


Q ss_pred             HHhchhhcCCCCCceeccCCCCCeeec-----CCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc-CCCc
Q 044022           76 NSLAYLHFGFPRPIVLRNFKTQNILFN-----EENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-VLNE  149 (241)
Q Consensus        76 ~~l~~lh~~~~~~ivh~dl~~~nil~~-----~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-~~~~  149 (241)
                      .||.|||   +.+++||||||+|||++     ..+.+||+|||.+.........  .....+|+.|+|||++.+. .++.
T Consensus       143 ~~l~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~~~~~~~~--~~~~~~t~~y~aPE~~~~~~~~~~  217 (329)
T 3gbz_A          143 NGVNFCH---SRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFGIPIRQ--FTHEIITLWYRPPEILLGSRHYST  217 (329)
T ss_dssp             HHHHHHH---HTTCCCSCCCGGGEEEEC-----CCEEEECCTTHHHHHC-------------CCTTCCHHHHTTCCCCCT
T ss_pred             HHHHHHH---hCCEECCCCCHHHEEEecCCCCccceEEECcCCCccccCCcccc--cCCCcCCccccCHHHhcCCCCCCc
Confidence            9999999   89999999999999994     4556999999999765433221  1234679999999999875 4799


Q ss_pred             chhhHHHHHHHHHHHhcCccccc
Q 044022          150 KSNVFSFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       150 ~~Di~s~G~~~~~~~~g~~p~~~  172 (241)
                      ++||||||+++|+|++|..||..
T Consensus       218 ~~DiwslG~il~ell~g~~pf~~  240 (329)
T 3gbz_A          218 SVDIWSIACIWAEMLMKTPLFPG  240 (329)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             HHHHHHHHHHHHHHHHCCCCcCC
Confidence            99999999999999999999954

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=100.00  E-value=2.5e-39  Score=279.87  Aligned_cols=201  Identities=23%  Similarity=0.304  Sum_probs=158.8

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC-----C-chHHHHHHHHHHHhchhhcCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA-----P-LPRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~-----~-~~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ..+.|.+|+++|++++||||+++++++.. +..++||||+++|+|.+++...     . ...+.++.+|+.||.|||   
T Consensus       305 ~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH---  380 (535)
T 2h8h_A          305 SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE---  380 (535)
T ss_dssp             CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECCCTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHH---
T ss_pred             CHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccceEeeehhcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            45789999999999999999999999876 6789999999999999999742     1 256789999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~  165 (241)
                      +++++||||||+|||++.++.+||+|||++........ .......++..|+|||++....++.++||||||+++|+|++
T Consensus       381 ~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t  459 (535)
T 2h8h_A          381 RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY-TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTT  459 (535)
T ss_dssp             HTTCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHHH-HTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTT
T ss_pred             hCCeeCCCCCHhhEEEcCCCcEEEcccccceecCCCce-ecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHh
Confidence            89999999999999999999999999999976543211 11122346778999999998899999999999999999999


Q ss_pred             -cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          166 -GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       166 -g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                       |+.||....         ..+..... ..+.....     ..        .++..+.+||.+||+.||++|||++
T Consensus       460 ~g~~P~~~~~---------~~~~~~~i-~~~~~~~~-----~~--------~~~~~l~~li~~cl~~dP~~RPt~~  512 (535)
T 2h8h_A          460 KGRVPYPGMV---------NREVLDQV-ERGYRMPC-----PP--------ECPESLHDLMCQCWRKEPEERPTFE  512 (535)
T ss_dssp             TTCCSSTTCC---------HHHHHHHH-HTTCCCCC-----CT--------TCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CCCCCCCCCC---------HHHHHHHH-HcCCCCCC-----CC--------CCCHHHHHHHHHHcCCChhHCcCHH
Confidence             999995421         12222222 12211111     11        2235788999999999999999985

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=100.00  E-value=1.4e-38  Score=257.50  Aligned_cols=206  Identities=23%  Similarity=0.332  Sum_probs=152.5

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcC-----CC---chHHHHHHHHHHHhchhh
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFG-----AP---LPRLKIASDIVNSLAYLH   82 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~-----~~---~~~~~~~~~i~~~l~~lh   82 (241)
                      ....++.+|+.++++++||||+++++++...+..++||||+++++|.+++..     ..   .....++.+++.||.|||
T Consensus        74 ~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH  153 (310)
T 2wqm_A           74 KARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMH  153 (310)
T ss_dssp             HHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEEEecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHh
Confidence            4567789999999999999999999999999999999999999999998853     11   246789999999999999


Q ss_pred             cCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHH
Q 044022           83 FGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFE  162 (241)
Q Consensus        83 ~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~  162 (241)
                         +.+++|+||||+||+++.++.++|+|||.+.........  .....+++.|+|||.+.+..++.++||||||+++|+
T Consensus       154 ---~~~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~  228 (310)
T 2wqm_A          154 ---SRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTA--AHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYE  228 (310)
T ss_dssp             ---HTTCCCCCCCGGGEEECTTSCEEECCC--------------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             ---hCCeeCCCCcHHHEEEcCCCCEEEEeccceeeecCCCcc--ccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHH
Confidence               899999999999999999999999999998765433211  123468899999999998899999999999999999


Q ss_pred             HHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          163 LLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       163 ~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      |++|..||....       .......... .........    ..        ..+..+.+++.+||+.||++|||++|
T Consensus       229 l~~g~~p~~~~~-------~~~~~~~~~~-~~~~~~~~~----~~--------~~~~~l~~li~~~l~~dp~~Rps~~~  287 (310)
T 2wqm_A          229 MAALQSPFYGDK-------MNLYSLCKKI-EQCDYPPLP----SD--------HYSEELRQLVNMCINPDPEKRPDVTY  287 (310)
T ss_dssp             HHHSSCTTC----------CCHHHHHHHH-HTTCSCCCC----TT--------TSCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             HHhCCCCCcccc-------hhHHHHHHHh-hcccCCCCc----cc--------ccCHHHHHHHHHHcCCChhhCCCHHH
Confidence            999999995421       1111111111 111111111    01        12257899999999999999999753

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=100.00  E-value=5.8e-39  Score=257.25  Aligned_cols=205  Identities=20%  Similarity=0.342  Sum_probs=159.0

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHHHhchhhcCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ...+.+.+|++++++++||||+++++++.... .++|+||+++++|.+++....     .....++.+++.||.|||   
T Consensus        63 ~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH---  138 (291)
T 1u46_A           63 EAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-MKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLE---  138 (291)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-CEEEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-ceeeEecccCCCHHHHHHhccCCcCHHHHHHHHHHHHHHHHHHH---
Confidence            45678999999999999999999999997665 889999999999999986531     246789999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcc-eeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHH
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH-ITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~-~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~  164 (241)
                      +.+++|+||||+||+++.++.++|+|||.+......... .......++..|+|||.+.+..++.++||||||+++|+|+
T Consensus       139 ~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~  218 (291)
T 1u46_A          139 SKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMF  218 (291)
T ss_dssp             HTTEECSCCCGGGEEEEETTEEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHH
T ss_pred             hCCcccCCCchheEEEcCCCCEEEccccccccccccccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHH
Confidence            899999999999999999999999999999876544322 1222345677899999998888899999999999999999


Q ss_pred             h-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          165 A-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       165 ~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      + |..||....         ..+.............     ...        ..+..+.+++.+||+.||++|||+.|
T Consensus       219 ~~g~~p~~~~~---------~~~~~~~~~~~~~~~~-----~~~--------~~~~~l~~li~~~l~~~p~~Rps~~~  274 (291)
T 1u46_A          219 TYGQEPWIGLN---------GSQILHKIDKEGERLP-----RPE--------DCPQDIYNVMVQCWAHKPEDRPTFVA  274 (291)
T ss_dssp             TTSCCTTTTCC---------HHHHHHHHHTSCCCCC-----CCT--------TCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             hCCCCCcccCC---------HHHHHHHHHccCCCCC-----CCc--------CcCHHHHHHHHHHccCCcccCcCHHH
Confidence            9 999995421         1222222222111111     111        12367899999999999999999753

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=100.00  E-value=4e-38  Score=275.07  Aligned_cols=235  Identities=20%  Similarity=0.212  Sum_probs=165.0

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeee------CCcceEEEEecCCCCHHHhhcCCC-------chH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQ------TPIPILVFQSVEYGTLRDCIFGAP-------LPR   67 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~------~~~~~lv~e~~~~~sL~~~l~~~~-------~~~   67 (241)
                      ||++..+......+++.+|++++++++||||+++++++..      .+..++||||+++|+|.+++....       ...
T Consensus        44 VKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i  123 (676)
T 3qa8_A           44 IKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPI  123 (676)
T ss_dssp             ECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSSCCCEEECCSSCBHHHHHHSSSCTTCCCSSHH
T ss_pred             EEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCeEEEEEEeCCCCCHHHHHHhcccCCCCCHHHH
Confidence            4666555555567789999999999999999999998765      667899999999999999987632       257


Q ss_pred             HHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCC---eEEeeccCceecCCCCcceeecccccCCCccCcccccc
Q 044022           68 LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENV---AKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI  144 (241)
Q Consensus        68 ~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~---~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~  144 (241)
                      ..++.+++.||.|||   +.+++||||||+||+++.++.   ++|+|||.+.........   ....|++.|+|||.+.+
T Consensus       124 ~~I~~QLl~aL~yLH---s~gIVHrDLKP~NILl~~~g~~~~vKL~DFG~a~~~~~~~~~---~~~~gt~~Y~APE~l~~  197 (676)
T 3qa8_A          124 RTLLSDISSALRYLH---ENRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQGELC---TEFVGTLQYLAPELLEQ  197 (676)
T ss_dssp             HHHHHHHHHHHHHHH---HTTBCCCCCCSTTEEEECCSSSCEEEECSCCCCCBTTSCCCC---CCCCSCCTTCSSCSSCC
T ss_pred             HHHHHHHHHHHHHHH---HCCCccCCCCHHHeEeecCCCceeEEEccccccccccccccc---ccccCCcccCChHHhcc
Confidence            889999999999999   899999999999999997664   899999999876544322   33578999999999999


Q ss_pred             cCCCcchhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHH
Q 044022          145 CVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQL  224 (241)
Q Consensus       145 ~~~~~~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  224 (241)
                      ..++.++||||||+++|++++|..||............................+...-......+.......+..+.++
T Consensus       198 ~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~~lp~p~~l~~~ls~~L~dL  277 (676)
T 3qa8_A          198 KKYTVTVDYWSFGTLAFECITGFRPFLPNWQPVQWHGKVREKSNEHIVVYDDLTGAVKFSSVLPTPNHLSGILAGKLERW  277 (676)
T ss_dssp             SCCSTTHHHHHHHHHHHHHHSSCSSCCSSCHHHHSSTTCC------CCSCCCCSSSCCCCSSSCCSCCCCGGGHHHHHHH
T ss_pred             CCCCchhHHHHHHHHHHHHHHCCCCCCcccchhhhhhhhhcccchhhhhhhhhccccccccccCCchhhchhhhHHHHHH
Confidence            99999999999999999999999999542110000000000000000000000000000000000111112355789999


Q ss_pred             HHHhccCCCCCCCCCCC
Q 044022          225 TLECVNNSPEDRPTMVD  241 (241)
Q Consensus       225 ~~~cl~~~p~~Rpt~~e  241 (241)
                      +..||..||++|||++|
T Consensus       278 I~~mL~~DP~kRPTa~e  294 (676)
T 3qa8_A          278 LQCMLMWHQRQRGTDPQ  294 (676)
T ss_dssp             HHHHSCSSCC---CCTT
T ss_pred             HHHHccCCHhhCcCHHH
Confidence            99999999999999975

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=100.00  E-value=3.4e-38  Score=251.50  Aligned_cols=201  Identities=23%  Similarity=0.319  Sum_probs=159.0

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC------chHHHHHHHHHHHhchhhcCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP------LPRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~------~~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ..+.+.+|++++++++||||+++++++. .+..++||||+++++|.+++....      .....++.+++.||.|||   
T Consensus        51 ~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---  126 (279)
T 1qpc_A           51 SPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIE---  126 (279)
T ss_dssp             CHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHH---
T ss_pred             cHHHHHHHHHHHHhCCCcCcceEEEEEc-CCCcEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            4678999999999999999999999986 456899999999999999997531      246789999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~  165 (241)
                      +.+++|+||||+||+++.++.++|+|||.+........ .......++..|+|||.+.+..++.++||||||+++|+|++
T Consensus       127 ~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~  205 (279)
T 1qpc_A          127 ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEY-TAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT  205 (279)
T ss_dssp             HTTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCE-ECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHT
T ss_pred             HCCeeccCCCHhhEEEcCCCCEEECCCcccccccCccc-ccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHh
Confidence            89999999999999999999999999999987654322 11223346778999999988889999999999999999999


Q ss_pred             -cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          166 -GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       166 -g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                       |..||....         ..+....... +...     ....        ..+..+.+++.+||+.||++|||++
T Consensus       206 ~g~~p~~~~~---------~~~~~~~~~~-~~~~-----~~~~--------~~~~~l~~li~~~l~~~p~~Rps~~  258 (279)
T 1qpc_A          206 HGRIPYPGMT---------NPEVIQNLER-GYRM-----VRPD--------NCPEELYQLMRLCWKERPEDRPTFD  258 (279)
T ss_dssp             TTCCSSTTCC---------HHHHHHHHHT-TCCC-----CCCT--------TCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             CCCCCCcccC---------HHHHHHHHhc-ccCC-----CCcc--------cccHHHHHHHHHHhccChhhCCCHH
Confidence             899985421         1122222211 1110     1111        1225789999999999999999975

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.8e-38  Score=256.08  Aligned_cols=204  Identities=23%  Similarity=0.271  Sum_probs=161.7

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcC--CCc---hHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFG--APL---PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~--~~~---~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ..+.+.+|+.++++++||||+++++++...+..++||||+++++|.+++..  ...   ....++.+++.||.|||   +
T Consensus        67 ~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~  143 (314)
T 3com_A           67 DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLH---F  143 (314)
T ss_dssp             CCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTEEHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH---H
T ss_pred             HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEeecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---h
Confidence            457789999999999999999999999999999999999999999999852  222   46789999999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhc
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      .+++|+||+|+||+++.++.++|+|||.+........  ......+++.|+|||.+.+..++.++||||||+++|+|++|
T Consensus       144 ~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g  221 (314)
T 3com_A          144 MRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEG  221 (314)
T ss_dssp             TTEECCCCSGGGEEECTTCCEEECCCTTCEECBTTBS--CBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHS
T ss_pred             CCCcCCCcCHHHEEECCCCCEEEeecccchhhhhhcc--ccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999976544322  12334688999999999988899999999999999999999


Q ss_pred             CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          167 RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ..||.....         ........ .........   ..        ..+..+.+++.+||+.||++|||++|
T Consensus       222 ~~p~~~~~~---------~~~~~~~~-~~~~~~~~~---~~--------~~~~~l~~li~~~l~~dp~~Rpt~~~  275 (314)
T 3com_A          222 KPPYADIHP---------MRAIFMIP-TNPPPTFRK---PE--------LWSDNFTDFVKQCLVKSPEQRATATQ  275 (314)
T ss_dssp             SCTTTTSCH---------HHHHHHHH-HSCCCCCSS---GG--------GSCHHHHHHHHHHTCSCTTTSCCHHH
T ss_pred             CCCCCCCCh---------HHHHHHHh-cCCCcccCC---cc--------cCCHHHHHHHHHHccCChhhCcCHHH
Confidence            999964211         11111111 111111110   11        12357889999999999999999753

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=100.00  E-value=1.8e-38  Score=252.56  Aligned_cols=201  Identities=25%  Similarity=0.337  Sum_probs=153.3

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ...+.+.+|++++++++||||+++++++...+..++||||+++++|.+++....    .....++.+++.||.|||   +
T Consensus        53 ~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH---~  129 (276)
T 2h6d_A           53 DVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVMEYVSGGELFDYICKHGRVEEMEARRLFQQILSAVDYCH---R  129 (276)
T ss_dssp             TCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHH---H
T ss_pred             hHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEEEeccCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            456788999999999999999999999999999999999999999999986432    256789999999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCC-CcchhhHHHHHHHHHHHh
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVL-NEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~-~~~~Di~s~G~~~~~~~~  165 (241)
                      .+++|+||+|+||+++.++.++|+|||.+........   .....+++.|+|||.+.+..+ +.++||||||+++|+|++
T Consensus       130 ~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~  206 (276)
T 2h6d_A          130 HMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEF---LRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLC  206 (276)
T ss_dssp             HCSSCCCCCGGGEEECTTSCEEECCCCGGGCCCC----------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCccCCCChhhEEECCCCCEEEeecccccccCCCcc---eecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHh
Confidence            9999999999999999999999999999876544322   123467899999999987765 589999999999999999


Q ss_pred             cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          166 GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       166 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      |..||...         ...+...... .... ..     ..        ..+..+.+++.+||+.||++|||++|
T Consensus       207 g~~p~~~~---------~~~~~~~~~~-~~~~-~~-----~~--------~~~~~l~~li~~~l~~~p~~Rps~~~  258 (276)
T 2h6d_A          207 GTLPFDDE---------HVPTLFKKIR-GGVF-YI-----PE--------YLNRSVATLLMHMLQVDPLKRATIKD  258 (276)
T ss_dssp             SSCSSCCS---------SHHHHHHHHH-HCCC-CC-----CT--------TSCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             CCCCCCCC---------cHHHHHHHhh-cCcc-cC-----ch--------hcCHHHHHHHHHHccCChhhCCCHHH
Confidence            99999541         1112222211 1111 01     11        11256889999999999999999853

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=4.1e-38  Score=259.78  Aligned_cols=152  Identities=24%  Similarity=0.301  Sum_probs=134.5

Q ss_pred             cHHHHHHHHHHHHhcC-----CCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC---c---hHHHHHHHHHHHhch
Q 044022           12 TYGSCINNITYAAQMS-----HNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP---L---PRLKIASDIVNSLAY   80 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~-----h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~---~---~~~~~~~~i~~~l~~   80 (241)
                      ..+.+.+|+.+++.++     ||||+++++++...+..++||||+ +++|.+++....   .   ....++.||+.||.|
T Consensus        74 ~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~  152 (360)
T 3llt_A           74 YTRSAKIEADILKKIQNDDINNNNIVKYHGKFMYYDHMCLIFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNY  152 (360)
T ss_dssp             HHHHHHHHHHHHHHTCCCSTTGGGBCCEEEEEEETTEEEEEECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHhcccCCCCCCeecccceeeECCeeEEEEcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence            4566788999999996     999999999999999999999999 899999986543   1   467889999999999


Q ss_pred             hhcCCCCCceeccCCCCCeeecC-------------------------CCCeEEeeccCceecCCCCcceeecccccCCC
Q 044022           81 LHFGFPRPIVLRNFKTQNILFNE-------------------------ENVAKWFDFLLSISIPEGETHITTDRVIGTRG  135 (241)
Q Consensus        81 lh~~~~~~ivh~dl~~~nil~~~-------------------------~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~  135 (241)
                      ||   +.+++||||||+|||++.                         ++.+||+|||++.......     ....||+.
T Consensus       153 LH---~~~ivHrDlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~-----~~~~gt~~  224 (360)
T 3llt_A          153 LR---KMSLTHTDLKPENILLDDPYFEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDYH-----GSIINTRQ  224 (360)
T ss_dssp             HH---HTTEECSCCSGGGEEESCTTCCEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSCC-----CSCCSCGG
T ss_pred             HH---HCCeeeCCCCcccEEEccccccccccchhcccccccccccccCCCCEEEEeccCceecCCCC-----cCccCccc
Confidence            99   899999999999999975                         7899999999998654432     33568999


Q ss_pred             ccCcccccccCCCcchhhHHHHHHHHHHHhcCccccc
Q 044022          136 YSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       136 ~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~~p~~~  172 (241)
                      |+|||++.+..++.++||||||+++|+|++|+.||..
T Consensus       225 y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~  261 (360)
T 3llt_A          225 YRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLLFRT  261 (360)
T ss_dssp             GCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSCCC
T ss_pred             ccCcHHHcCCCCCCccchHHHHHHHHHHHHCCCCCCC
Confidence            9999999999999999999999999999999999965

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=100.00  E-value=2.8e-39  Score=257.72  Aligned_cols=203  Identities=19%  Similarity=0.285  Sum_probs=157.0

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeee--CCcceEEEEecCCCCHHHhhcCC--------CchHHHHHHHHHHHhch
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQ--TPIPILVFQSVEYGTLRDCIFGA--------PLPRLKIASDIVNSLAY   80 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~--~~~~~lv~e~~~~~sL~~~l~~~--------~~~~~~~~~~i~~~l~~   80 (241)
                      ...+.+.+|++++++++||||+++++++..  .+..++||||+++++|.+++...        ......++.+++.||.|
T Consensus        47 ~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~  126 (279)
T 2w5a_A           47 AEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKE  126 (279)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEEEEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEEEEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHH
Confidence            446678999999999999999999998854  56789999999999999998642        12467899999999999


Q ss_pred             hhcCCCCC-----ceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHH
Q 044022           81 LHFGFPRP-----IVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFS  155 (241)
Q Consensus        81 lh~~~~~~-----ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s  155 (241)
                      ||   +.+     ++|+||||+||+++.++.++|+|||.+.........  .....+++.|+|||.+.+..++.++||||
T Consensus       127 lH---~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~s  201 (279)
T 2w5a_A          127 CH---RRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSF--AKTFVGTPYYMSPEQMNRMSYNEKSDIWS  201 (279)
T ss_dssp             HH---HHC------CCCCCSGGGEEECSSSCEEECCCCHHHHC---CHH--HHHHHSCCTTCCHHHHHCC-CCHHHHHHH
T ss_pred             Hh---cccCCCCeeEEeccchhhEEEcCCCCEEEecCchheeecccccc--ccccCCCccccChHHhccCCCCchhhHHH
Confidence            99   777     999999999999999999999999998765433211  12346889999999999888999999999


Q ss_pred             HHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCC
Q 044022          156 FGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPED  235 (241)
Q Consensus       156 ~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~  235 (241)
                      ||+++|+|++|..||....         ..+.... ...+.....     ...        .+..+.+++.+||+.||++
T Consensus       202 lG~il~~l~~g~~p~~~~~---------~~~~~~~-i~~~~~~~~-----~~~--------~~~~l~~li~~~l~~~p~~  258 (279)
T 2w5a_A          202 LGCLLYELCALMPPFTAFS---------QKELAGK-IREGKFRRI-----PYR--------YSDELNEIITRMLNLKDYH  258 (279)
T ss_dssp             HHHHHHHHHHSSCSSCCSS---------HHHHHHH-HHHTCCCCC-----CTT--------SCHHHHHHHHHHTCSSGGG
T ss_pred             HHHHHHHHHHCCCCCcccC---------HHHHHHH-HhhcccccC-----Ccc--------cCHHHHHHHHHHcCCCccc
Confidence            9999999999999996521         1111111 122222111     111        2257899999999999999


Q ss_pred             CCCCCC
Q 044022          236 RPTMVD  241 (241)
Q Consensus       236 Rpt~~e  241 (241)
                      |||++|
T Consensus       259 Rps~~~  264 (279)
T 2w5a_A          259 RPSVEE  264 (279)
T ss_dssp             SCCHHH
T ss_pred             CCCHHH
Confidence            999853

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=100.00  E-value=2e-38  Score=266.70  Aligned_cols=203  Identities=20%  Similarity=0.242  Sum_probs=148.9

Q ss_pred             HHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCCCC
Q 044022           13 YGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFPRP   88 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~~~   88 (241)
                      ...+.+|++++++++||||+++++++. .+..++||||+++|+|.+++.....    ....++.|++.||.|||   +++
T Consensus       184 ~~~~~~E~~~l~~l~hpniv~l~~~~~-~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~  259 (419)
T 3i6u_A          184 ALNVETEIEILKKLNHPCIIKIKNFFD-AEDYYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLH---ENG  259 (419)
T ss_dssp             -CCHHHHHHHHHHCCCTTBCCCCEEEE-SSEEEEEEECCTTCBGGGGTSSSCCCCHHHHHHHHHHHHHHHHHHH---HTT
T ss_pred             HHHHHHHHHHHHhCCCCCEeeEEEEEe-cCceEEEEEcCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCC
Confidence            346889999999999999999999985 4557999999999999998876532    46789999999999999   899


Q ss_pred             ceeccCCCCCeeecCCC---CeEEeeccCceecCCCCcceeecccccCCCccCcccccc---cCCCcchhhHHHHHHHHH
Q 044022           89 IVLRNFKTQNILFNEEN---VAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI---CVLNEKSNVFSFGAFLFE  162 (241)
Q Consensus        89 ivh~dl~~~nil~~~~~---~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~---~~~~~~~Di~s~G~~~~~  162 (241)
                      ++||||||+|||++..+   .+||+|||++........   .....||+.|+|||++.+   ..++.++||||||+++|+
T Consensus       260 ivHrDlkp~NIll~~~~~~~~~kl~DFG~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~  336 (419)
T 3i6u_A          260 IIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSL---MRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFI  336 (419)
T ss_dssp             CCCSCCCGGGEEESSSSSSCCEEECCSSTTTSCC--------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHH
T ss_pred             ccccCCChHhEEEecCCCcceEEEeecccceecCCCcc---ccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHH
Confidence            99999999999997544   599999999976544321   133568999999999864   567889999999999999


Q ss_pred             HHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          163 LLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       163 ~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      |++|..||......     ....+    ....+....  .+..        ....+..+.+++.+||+.||++|||++|
T Consensus       337 lltg~~pf~~~~~~-----~~~~~----~i~~~~~~~--~~~~--------~~~~~~~~~~li~~~L~~dP~~Rps~~e  396 (419)
T 3i6u_A          337 CLSGYPPFSEHRTQ-----VSLKD----QITSGKYNF--IPEV--------WAEVSEKALDLVKKLLVVDPKARFTTEE  396 (419)
T ss_dssp             HHHSSCSSCCCSSS-----CCHHH----HHHTTCCCC--CHHH--------HTTSCHHHHHHHHHHSCSSTTTSCCHHH
T ss_pred             HHHCCCCCCCCcch-----HHHHH----HHhcCCCCC--Cchh--------hcccCHHHHHHHHHHccCChhHCcCHHH
Confidence            99999999652111     11111    111111100  0000        0122367899999999999999999853

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=4.6e-38  Score=258.33  Aligned_cols=214  Identities=21%  Similarity=0.193  Sum_probs=159.3

Q ss_pred             HHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHHHhchhhcCCCC
Q 044022           13 YGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      .+.+.+|++++++++||||+++++++...+..++||||++ ++|.+++....     .....++.+++.||.|||   +.
T Consensus        56 ~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~  131 (346)
T 1ua2_A           56 NRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFME-TDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLH---QH  131 (346)
T ss_dssp             CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEECCS-EEHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHH---HT
T ss_pred             hHHHHHHHHHHhhCCCCCCCeEEEEEeeCCceEEEEEcCC-CCHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHH---HC
Confidence            4578899999999999999999999999999999999997 48988886542     257889999999999999   89


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc-CCCcchhhHHHHHHHHHHHhc
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-VLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      +++||||||+||+++.++.+||+|||++.........  .....+|+.|+|||++.+. .++.++||||||+++|+|++|
T Consensus       132 ~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~--~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g  209 (346)
T 1ua2_A          132 WILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRA--YTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLR  209 (346)
T ss_dssp             TCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCCC--CCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHS
T ss_pred             CEECCCCCHHHEEEcCCCCEEEEecccceeccCCccc--CCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHC
Confidence            9999999999999999999999999999765433221  2335689999999998754 578999999999999999999


Q ss_pred             CcccccccccCCCcccchHHHHHHHhhh-cc--cCCCC------CCccccCCCch----hHHHHHHHHHHHHHHhccCCC
Q 044022          167 RIHIWDLLKDTHDHGCFFNEYLKNYLED-KR--FTGIP------APIIVQDIPCI----EKEQQLHASAQLTLECVNNSP  233 (241)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~------~~~~~~~~~~~----~~~~~~~~~~~l~~~cl~~~p  233 (241)
                      .+||....         ..+........ +.  ....+      +.......+..    .....+..+.+|+.+||+.||
T Consensus       210 ~~~~~~~~---------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP  280 (346)
T 1ua2_A          210 VPFLPGDS---------DLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNP  280 (346)
T ss_dssp             SCSSCCSS---------HHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSST
T ss_pred             CCCCCCCC---------HHHHHHHHHHHcCCCChhhhhhhccCcccccccccCCCChHHhhccCCHHHHHHHHHHhccCh
Confidence            99985421         11111111111 00  00000      00000000000    001233678999999999999


Q ss_pred             CCCCCCCC
Q 044022          234 EDRPTMVD  241 (241)
Q Consensus       234 ~~Rpt~~e  241 (241)
                      ++|||++|
T Consensus       281 ~~Rpt~~e  288 (346)
T 1ua2_A          281 CARITATQ  288 (346)
T ss_dssp             TTSCCHHH
T ss_pred             hhCCCHHH
Confidence            99999854

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=100.00  E-value=5.4e-39  Score=266.26  Aligned_cols=217  Identities=9%  Similarity=0.046  Sum_probs=144.9

Q ss_pred             Cccccccc--ccccHHHHHHHHHHHHhc--CCCccccee-------eeeeeC-----------------CcceEEEEecC
Q 044022            1 MKFYGHEY--HRHTYGSCINNITYAAQM--SHNHILKRI-------GCCLQT-----------------PIPILVFQSVE   52 (241)
Q Consensus         1 iK~~~~~~--~~~~~~~~~~e~~~l~~l--~h~~iv~~~-------~~~~~~-----------------~~~~lv~e~~~   52 (241)
                      ||++....  .....+.+.+|+++++.|  +||||++++       +++...                 ...++||||++
T Consensus        92 vK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~  171 (371)
T 3q60_A           92 LKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAVAVQSQPPFAQLSPGQDDYAVANYLLLMPAAS  171 (371)
T ss_dssp             EEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEEEETTSCSSSBCSCC---CCEEEEEEEECCCS
T ss_pred             EEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehheecCCCCCeeeccCCcccceeeeEEEEecCCC
Confidence            35554433  223456677886555555  699988755       444332                 23799999998


Q ss_pred             CCCHHHhhcCC----Cc-hH------HHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCC
Q 044022           53 YGTLRDCIFGA----PL-PR------LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEG  121 (241)
Q Consensus        53 ~~sL~~~l~~~----~~-~~------~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~  121 (241)
                       |+|.+++...    .. .+      +.++.|++.||+|||   +++|+||||||+|||++.++.+||+|||++......
T Consensus       172 -~~L~~~l~~~~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH---~~~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~~  247 (371)
T 3q60_A          172 -VDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQ---SKGLVHGHFTPDNLFIMPDGRLMLGDVSALWKVGTR  247 (371)
T ss_dssp             -EEHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHH---HTTEEETTCSGGGEEECTTSCEEECCGGGEEETTCE
T ss_pred             -CCHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHH---HCCCccCcCCHHHEEECCCCCEEEEecceeeecCCC
Confidence             8999998753    22 34      567799999999999   899999999999999999999999999999865432


Q ss_pred             CcceeecccccCCCccCcccccc--cCCCcchhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCC
Q 044022          122 ETHITTDRVIGTRGYSAPEYISI--CVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTG  199 (241)
Q Consensus       122 ~~~~~~~~~~~~~~~~aPE~~~~--~~~~~~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (241)
                      .     ....+++.|+|||++.+  ..++.++||||||+++|+|++|+.||..........           ........
T Consensus       248 ~-----~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~-----------~~~~~~~~  311 (371)
T 3q60_A          248 G-----PASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTPGIKGS-----------WKRPSLRV  311 (371)
T ss_dssp             E-----EGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSCSTTBCCTTCTTC-----------CCBCCTTS
T ss_pred             c-----cCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCCCCCCcCcccccc-----------hhhhhhhh
Confidence            1     13456799999999987  678999999999999999999999997632211000           00000000


Q ss_pred             CCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          200 IPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      .......  .+  .....++.+.+|+.+||+.||++|||++|
T Consensus       312 ~~~~~~~--~~--~~~~~~~~~~~li~~~L~~dP~~Rpt~~e  349 (371)
T 3q60_A          312 PGTDSLA--FG--SCTPLPDFVKTLIGRFLNFDRRRRLLPLE  349 (371)
T ss_dssp             CCCCSCC--CT--TSSCCCHHHHHHHHHHTCSSTTTCCCHHH
T ss_pred             ccccccc--hh--hccCCCHHHHHHHHHHcCCChhhCCCHHH
Confidence            0000000  00  00122367899999999999999999853

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=100.00  E-value=2.8e-38  Score=268.75  Aligned_cols=152  Identities=21%  Similarity=0.289  Sum_probs=124.8

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeC-----CcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchh
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQT-----PIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYL   81 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-----~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~l   81 (241)
                      ...+++.+|+++|++++||||+++++++...     ...|+||||+. ++|.+++.....    ....++.||+.||.||
T Consensus        94 ~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~~~l~~~~~~~~~~qi~~aL~~L  172 (458)
T 3rp9_A           94 IDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDELYVVLEIAD-SDFKKLFRTPVYLTELHIKTLLYNLLVGVKYV  172 (458)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCEEEEECCCS-EEHHHHHHSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCceEEEEEeccc-cchhhhcccCCCCCHHHHHHHHHHHHHHHHHH
Confidence            3467799999999999999999999999543     46899999985 799998876532    4678999999999999


Q ss_pred             hcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcc-------------------------eeecccccCCCc
Q 044022           82 HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH-------------------------ITTDRVIGTRGY  136 (241)
Q Consensus        82 h~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~-------------------------~~~~~~~~~~~~  136 (241)
                      |   +.+|+||||||+|||++.++.+||+|||+++........                         ......+||+.|
T Consensus       173 H---~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y  249 (458)
T 3rp9_A          173 H---SAGILHRDLKPANCLVNQDCSVKVCDFGLARTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWY  249 (458)
T ss_dssp             H---HTTCBCCCCCGGGEEECTTCCEEECCCTTCBCTTSCTTCCCCCC---------------------------CCCTT
T ss_pred             H---hCCcCCCCCChhhEEECCCCCEeecccccchhccCccccccccccCccccccccccccccccccccccCCcccccc
Confidence            9   899999999999999999999999999999865422110                         112345689999


Q ss_pred             cCcccc-cccCCCcchhhHHHHHHHHHHHhc
Q 044022          137 SAPEYI-SICVLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus       137 ~aPE~~-~~~~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      +|||++ ....++.++|||||||++|||++|
T Consensus       250 ~aPE~~~~~~~~~~~~DiwSlG~il~elltg  280 (458)
T 3rp9_A          250 RAPELILLQENYTEAIDVWSIGCIFAELLNM  280 (458)
T ss_dssp             CCHHHHTTCCCCCTHHHHHHHHHHHHHHHTT
T ss_pred             cChHHhhCCCCCCcHhHHHHHHHHHHHHHHh
Confidence            999986 456789999999999999999994

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=100.00  E-value=3.2e-38  Score=258.84  Aligned_cols=204  Identities=18%  Similarity=0.238  Sum_probs=157.0

Q ss_pred             HHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCCCCc
Q 044022           15 SCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFPRPI   89 (241)
Q Consensus        15 ~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~~~i   89 (241)
                      .+.+|++++.++ +||||+++++++...+..++||||+++|+|.+++.....    ....++.+|+.||.|||   +.++
T Consensus        61 ~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~i~~~~~~~~~~~~~~~~qi~~al~~lH---~~gi  137 (342)
T 2qr7_A           61 DPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTELMKGGELLDKILRQKFFSEREASAVLFTITKTVEYLH---AQGV  137 (342)
T ss_dssp             CCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHH---HTTE
T ss_pred             ChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---HCCc
Confidence            346789999888 799999999999999999999999999999999866532    46789999999999999   8999


Q ss_pred             eeccCCCCCeeecCC----CCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh
Q 044022           90 VLRNFKTQNILFNEE----NVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        90 vh~dl~~~nil~~~~----~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~  165 (241)
                      +||||||+|||+...    +.+||+|||++.........  .....+|+.|+|||++.+..++.++||||||+++|+|++
T Consensus       138 vHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~  215 (342)
T 2qr7_A          138 VHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGL--LMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLT  215 (342)
T ss_dssp             ECSCCCGGGEEESSSSCSGGGEEECCCTTCEECBCTTCC--BCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeccCCHHHEEEecCCCCcCeEEEEECCCcccCcCCCCc--eeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhc
Confidence            999999999998543    35999999999865443221  133568999999999988888999999999999999999


Q ss_pred             cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          166 GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       166 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                      |..||.....      ....+..... ..+.+. ... ....        ..+..+.+|+.+||..||++|||++
T Consensus       216 g~~Pf~~~~~------~~~~~~~~~i-~~~~~~-~~~-~~~~--------~~s~~~~~li~~~L~~dP~~R~t~~  273 (342)
T 2qr7_A          216 GYTPFANGPD------DTPEEILARI-GSGKFS-LSG-GYWN--------SVSDTAKDLVSKMLHVDPHQRLTAA  273 (342)
T ss_dssp             SSCSSCSSTT------SCHHHHHHHH-HHCCCC-CCS-TTTT--------TSCHHHHHHHHHHTCSSTTTSCCHH
T ss_pred             CCCCCCCCCc------CCHHHHHHHH-ccCCcc-cCc-cccc--------cCCHHHHHHHHHHCCCChhHCcCHH
Confidence            9999964211      1122222222 222111 010 0001        1235788999999999999999975

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=100.00  E-value=2.9e-38  Score=261.90  Aligned_cols=155  Identities=18%  Similarity=0.215  Sum_probs=125.8

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCC------cceEEEEecCCCCHHHhhcCCCc--hHHHHHHHHHHHhchhh
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTP------IPILVFQSVEYGTLRDCIFGAPL--PRLKIASDIVNSLAYLH   82 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~------~~~lv~e~~~~~sL~~~l~~~~~--~~~~~~~~i~~~l~~lh   82 (241)
                      ...+.+.+|+.++++++||||+++++++...+      ..++||||+. ++|.+.+.....  ....++.|++.||.|||
T Consensus        66 ~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH  144 (371)
T 2xrw_A           66 THAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMD-ANLCQVIQMELDHERMSYLLYQMLCGIKHLH  144 (371)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCCEEEEEEECCS-EEHHHHHHSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCccceEEeeccccccccccceEEEEEcCC-CCHHHHHhhccCHHHHHHHHHHHHHHHHHHH
Confidence            44567889999999999999999999997654      6799999997 588888764422  46789999999999999


Q ss_pred             cCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHH
Q 044022           83 FGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFE  162 (241)
Q Consensus        83 ~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~  162 (241)
                         +.+++||||||+|||++.++.+||+|||++........   .....||+.|+|||++.+..++.++||||||+++|+
T Consensus       145 ---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~e  218 (371)
T 2xrw_A          145 ---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFM---MTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGE  218 (371)
T ss_dssp             ---HTTCCCSCCCGGGEEECTTSCEEECCCCC-------------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHH
T ss_pred             ---HCCeecccCCHHHEEEcCCCCEEEEEeecccccccccc---cCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHH
Confidence               89999999999999999999999999999976543221   123468999999999999899999999999999999


Q ss_pred             HHhcCccccc
Q 044022          163 LLAGRIHIWD  172 (241)
Q Consensus       163 ~~~g~~p~~~  172 (241)
                      |++|+.||..
T Consensus       219 l~~g~~pf~~  228 (371)
T 2xrw_A          219 MIKGGVLFPG  228 (371)
T ss_dssp             HHHSSCSSCC
T ss_pred             HHhCCCCCCC
Confidence            9999999965

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=100.00  E-value=8.1e-39  Score=264.54  Aligned_cols=208  Identities=14%  Similarity=0.144  Sum_probs=152.9

Q ss_pred             HHHHHHHHHhcCCCcccceeeeeeeC----CcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHHHhchhhcCCC
Q 044022           16 CINNITYAAQMSHNHILKRIGCCLQT----PIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        16 ~~~e~~~l~~l~h~~iv~~~~~~~~~----~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      +.+|+..+..++||||+++++++...    ...++||||+ +++|.+++....     ..++.++.|++.||.|||   +
T Consensus        95 ~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH---~  170 (364)
T 3op5_A           95 QIQKWIRTRKLKYLGVPKYWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIH---E  170 (364)
T ss_dssp             HHHHHHHHTTCSCCCSCCEEEEEEEEETTEEEEEEEEECE-EEEHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHH---H
T ss_pred             HHHHHHHHhhccCCCCCeEEeeeeeccCCcceEEEEEeCC-CCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            44566667777899999999999865    4589999999 899999986542     157889999999999999   8


Q ss_pred             CCceeccCCCCCeeec--CCCCeEEeeccCceecCCCCcce-----eecccccCCCccCcccccccCCCcchhhHHHHHH
Q 044022           87 RPIVLRNFKTQNILFN--EENVAKWFDFLLSISIPEGETHI-----TTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAF  159 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~--~~~~~~l~df~~~~~~~~~~~~~-----~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~  159 (241)
                      .+++||||||+|||++  .++.+||+|||++..........     ......||+.|+|||++.+..++.++||||||++
T Consensus       171 ~~iiHrDlkp~Nill~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~  250 (364)
T 3op5_A          171 HEYVHGDIKASNLLLNYKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYC  250 (364)
T ss_dssp             TTEECCCCCGGGEEEESSCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHH
T ss_pred             CCeEEecCCHHHEEEecCCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHH
Confidence            9999999999999999  88999999999997654322111     1123458999999999999899999999999999


Q ss_pred             HHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCC
Q 044022          160 LFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM  239 (241)
Q Consensus       160 ~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~  239 (241)
                      +|+|++|+.||......     ............. ......++.+..       ...+..+.+++..||+.||++|||+
T Consensus       251 l~el~~g~~Pf~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~-------~~~~~~~~~li~~cl~~~p~~RP~~  317 (364)
T 3op5_A          251 MIQWLTGHLPWEDNLKD-----PKYVRDSKIRYRE-NIASLMDKCFPA-------ANAPGEIAKYMETVKLLDYTEKPLY  317 (364)
T ss_dssp             HHHHHHSCCTTGGGTTC-----HHHHHHHHHHHHH-CHHHHHHHHSCT-------TCCCHHHHHHHHHHHTCCTTCCCCH
T ss_pred             HHHHHhCCCCccccccC-----HHHHHHHHHHhhh-hHHHHHHHhccc-------ccCHHHHHHHHHHHhcCCCCCCCCH
Confidence            99999999999652111     1111111111000 000000000000       0123678999999999999999997


Q ss_pred             C
Q 044022          240 V  240 (241)
Q Consensus       240 ~  240 (241)
                      +
T Consensus       318 ~  318 (364)
T 3op5_A          318 E  318 (364)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=100.00  E-value=1.7e-39  Score=269.74  Aligned_cols=193  Identities=11%  Similarity=0.131  Sum_probs=147.5

Q ss_pred             ccHHHHHHHH---HHHHhcCCCccccee-------eeeeeCC-----------------cceEEEEecCCCCHHHhhcCC
Q 044022           11 HTYGSCINNI---TYAAQMSHNHILKRI-------GCCLQTP-----------------IPILVFQSVEYGTLRDCIFGA   63 (241)
Q Consensus        11 ~~~~~~~~e~---~~l~~l~h~~iv~~~-------~~~~~~~-----------------~~~lv~e~~~~~sL~~~l~~~   63 (241)
                      ...+.+.+|+   +++++++|||||+++       +++...+                 ..++||||+ +|+|.+++...
T Consensus       115 ~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~  193 (377)
T 3byv_A          115 NAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVL  193 (377)
T ss_dssp             THHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEEEECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhhhhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhc
Confidence            4567899999   555556899999998       5554443                 378999999 58999998642


Q ss_pred             ----C-------chHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeeccccc
Q 044022           64 ----P-------LPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIG  132 (241)
Q Consensus        64 ----~-------~~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~  132 (241)
                          .       ..++.++.|++.||.|||   +.+|+||||||+|||++.++.+||+|||++.....     ......|
T Consensus       194 ~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~-----~~~~~~g  265 (377)
T 3byv_A          194 LSHSSTHKSLVHHARLQLTLQVIRLLASLH---HYGLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGA-----RVVSSVS  265 (377)
T ss_dssp             HHTTTTTHHHHHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCGGGCEETTC-----EEECCCC
T ss_pred             cccccccccccHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEEechhheecCC-----cccCCCC
Confidence                1       235678999999999999   89999999999999999999999999999986433     1234467


Q ss_pred             CCCccCccccccc-----------CCCcchhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCC
Q 044022          133 TRGYSAPEYISIC-----------VLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIP  201 (241)
Q Consensus       133 ~~~~~aPE~~~~~-----------~~~~~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (241)
                       +.|+|||++.+.           .++.++||||||+++|+|++|+.||.........              ......  
T Consensus       266 -~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il~elltg~~Pf~~~~~~~~~--------------~~~~~~--  328 (377)
T 3byv_A          266 -RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCADLPITKDAALGGS--------------EWIFRS--  328 (377)
T ss_dssp             -TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHHHHHHHHSSCCC------CCS--------------GGGGSS--
T ss_pred             -cCccChhhhcccccccccccccccCChhhhHHHHHHHHHHHHHCCCCCcccccccch--------------hhhhhh--
Confidence             899999999887           8999999999999999999999999652211100              000000  


Q ss_pred             CCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          202 APIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                          ...        .++.+.+++.+||+.||++|||+.|
T Consensus       329 ----~~~--------~~~~~~~li~~~L~~dp~~Rpt~~e  356 (377)
T 3byv_A          329 ----CKN--------IPQPVRALLEGFLRYPKEDRLLPLQ  356 (377)
T ss_dssp             ----CCC--------CCHHHHHHHHHHTCSSGGGCCCHHH
T ss_pred             ----ccC--------CCHHHHHHHHHHcCCCchhCCCHHH
Confidence                011        1257889999999999999999853

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=100.00  E-value=9.4e-38  Score=276.19  Aligned_cols=200  Identities=20%  Similarity=0.231  Sum_probs=162.9

Q ss_pred             ccHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCC
Q 044022           11 HTYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ...+.+.+|.+++..+ +||||+++++++...+.+++||||+++|+|.+++....    .....++.||+.||.|||   
T Consensus       383 ~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH---  459 (674)
T 3pfq_A          383 DDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQ---  459 (674)
T ss_dssp             TTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEEEEEeCcCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            4567788999999988 79999999999999999999999999999999986532    256789999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~  165 (241)
                      +.+|+||||||+|||++.++.+||+|||++........  ......||+.|+|||++.+..++.++||||||+++|||++
T Consensus       460 ~~gIiHrDLKp~NILl~~~g~ikL~DFGla~~~~~~~~--~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyellt  537 (674)
T 3pfq_A          460 SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGV--TTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLA  537 (674)
T ss_dssp             HTSEECCCCCSTTEEECSSSCEEECCCTTCEECCCTTC--CBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHH
T ss_pred             hCCeEeccCChhhEEEcCCCcEEEeecceeeccccCCc--ccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHc
Confidence            89999999999999999999999999999986433222  2244679999999999999999999999999999999999


Q ss_pred             cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCC
Q 044022          166 GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM  239 (241)
Q Consensus       166 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~  239 (241)
                      |+.||...         ...+..........  .     ...        ..+..+.+|+.+||+.||++||++
T Consensus       538 G~~Pf~~~---------~~~~~~~~i~~~~~--~-----~p~--------~~s~~~~~li~~lL~~dP~~R~~~  587 (674)
T 3pfq_A          538 GQAPFEGE---------DEDELFQSIMEHNV--A-----YPK--------SMSKEAVAICKGLMTKHPGKRLGC  587 (674)
T ss_dssp             SSCSSCCS---------SHHHHHHHHHSSCC--C-----CCT--------TSCHHHHHHHHHHSCSSSTTCTTC
T ss_pred             CCCCCCCC---------CHHHHHHHHHhCCC--C-----CCc--------cCCHHHHHHHHHHccCCHHHCCCC
Confidence            99999652         11222222222110  1     111        122578999999999999999997

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=100.00  E-value=5.8e-38  Score=256.97  Aligned_cols=219  Identities=21%  Similarity=0.286  Sum_probs=162.2

Q ss_pred             ccHHHHHHHHHHHHh--cCCCcccceeeeeeeCC----cceEEEEecCCCCHHHhhcCCCc---hHHHHHHHHHHHhchh
Q 044022           11 HTYGSCINNITYAAQ--MSHNHILKRIGCCLQTP----IPILVFQSVEYGTLRDCIFGAPL---PRLKIASDIVNSLAYL   81 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~--l~h~~iv~~~~~~~~~~----~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~i~~~l~~l   81 (241)
                      .....+.+|++++..  ++||||+++++++....    ..++||||+++|+|.+++.....   ..+.++.+++.||.||
T Consensus        76 ~~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~l  155 (342)
T 1b6c_B           76 REERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHL  155 (342)
T ss_dssp             GGHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCCCEEEEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCccceeEEEEeecCCCcHHHHHhccCccHHHHHHHHHHHHHHHHHH
Confidence            345678899999988  79999999999998775    78999999999999999976543   4678999999999999


Q ss_pred             hcCC-----CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcce--eecccccCCCccCccccccc------CCC
Q 044022           82 HFGF-----PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHI--TTDRVIGTRGYSAPEYISIC------VLN  148 (241)
Q Consensus        82 h~~~-----~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~--~~~~~~~~~~~~aPE~~~~~------~~~  148 (241)
                      |...     +.+++||||||+||+++.++.+||+|||.+..........  ......|++.|+|||.+.+.      .++
T Consensus       156 H~~~~~~~~~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~  235 (342)
T 1b6c_B          156 HMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESF  235 (342)
T ss_dssp             HCCBCSTTCBCEEECSCCSGGGEEECTTSCEEECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHH
T ss_pred             HHHHhhhcccCCeeeCCCCHHHEEECCCCCEEEEECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccC
Confidence            9321     4689999999999999999999999999997665433221  22345689999999998765      233


Q ss_pred             cchhhHHHHHHHHHHHhc----------CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHH
Q 044022          149 EKSNVFSFGAFLFELLAG----------RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQL  218 (241)
Q Consensus       149 ~~~Di~s~G~~~~~~~~g----------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (241)
                      .++||||||+++|+|++|          ..||.......    ........... .....    +.+...   .......
T Consensus       236 ~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~~~~~~~----~~~~~~~~~~~-~~~~~----~~~~~~---~~~~~~~  303 (342)
T 1b6c_B          236 KRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSD----PSVEEMRKVVC-EQKLR----PNIPNR---WQSCEAL  303 (342)
T ss_dssp             HHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSS----CCHHHHHHHHT-TSCCC----CCCCGG---GGTSHHH
T ss_pred             CcccHHHHHHHHHHHHhccCcCCcccccccCccccCcCc----ccHHHHHHHHH-HHHhC----CCCccc---ccchhHH
Confidence            689999999999999999          67775422111    11122222221 11111    111111   1112566


Q ss_pred             HHHHHHHHHhccCCCCCCCCCCC
Q 044022          219 HASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       219 ~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ..+.+++.+||+.||++|||++|
T Consensus       304 ~~l~~li~~cl~~dp~~Rps~~~  326 (342)
T 1b6c_B          304 RVMAKIMRECWYANGAARLTALR  326 (342)
T ss_dssp             HHHHHHHHHHCCSSGGGSCCHHH
T ss_pred             HHHHHHHHHHhccChhhCCCHHH
Confidence            78999999999999999999853

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=100.00  E-value=1.9e-38  Score=252.96  Aligned_cols=199  Identities=22%  Similarity=0.288  Sum_probs=151.0

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeC-CcceEEEEecCCCCHHHhhcCCC------chHHHHHHHHHHHhchhhcC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQT-PIPILVFQSVEYGTLRDCIFGAP------LPRLKIASDIVNSLAYLHFG   84 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-~~~~lv~e~~~~~sL~~~l~~~~------~~~~~~~~~i~~~l~~lh~~   84 (241)
                      ..+.+.+|++++++++||||+++++++... +..++||||+++++|.+++....      .....++.+++.||.|||  
T Consensus        57 ~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH--  134 (278)
T 1byg_A           57 TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE--  134 (278)
T ss_dssp             --HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEecCCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHH--
Confidence            467799999999999999999999987654 47899999999999999986532      246789999999999999  


Q ss_pred             CCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHH
Q 044022           85 FPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        85 ~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~  164 (241)
                       +.+++|+||||+||+++.++.++|+|||.+.......     ....+++.|+|||.+.+..++.++||||||+++|+|+
T Consensus       135 -~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~  208 (278)
T 1byg_A          135 -GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ-----DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIY  208 (278)
T ss_dssp             -HTTCCCSCCSGGGEEECTTSCEEECCCCC-----------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             -hCCccccCCCcceEEEeCCCcEEEeeccccccccccc-----cCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHH
Confidence             8999999999999999999999999999987544322     2235678899999999888999999999999999999


Q ss_pred             h-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          165 A-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       165 ~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      + |..||.....         .+...... .+..     .....        ..++.+.+++.+||+.||++|||+.|
T Consensus       209 t~g~~p~~~~~~---------~~~~~~~~-~~~~-----~~~~~--------~~~~~l~~li~~~l~~~p~~Rps~~~  263 (278)
T 1byg_A          209 SFGRVPYPRIPL---------KDVVPRVE-KGYK-----MDAPD--------GCPPAVYEVMKNCWHLDAAMRPSFLQ  263 (278)
T ss_dssp             TTSCCSCTTSCG---------GGHHHHHT-TTCC-----CCCCT--------TCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             hCCCCCCCCCCH---------HHHHHHHh-cCCC-----CCCcc--------cCCHHHHHHHHHHhcCChhhCCCHHH
Confidence            8 9999965211         11111111 1110     11111        12367899999999999999999753

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=100.00  E-value=1.3e-38  Score=254.52  Aligned_cols=196  Identities=15%  Similarity=0.170  Sum_probs=155.4

Q ss_pred             ccHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC--------CchHHHHHHHHHHHhchh
Q 044022           11 HTYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA--------PLPRLKIASDIVNSLAYL   81 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~--------~~~~~~~~~~i~~~l~~l   81 (241)
                      ....++.+|+..+.++ +||||+++++++...+..++||||+++++|.+++...        ......++.|++.||.||
T Consensus        52 ~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~l  131 (289)
T 1x8b_A           52 VDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYI  131 (289)
T ss_dssp             HHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHH
Confidence            4567788999999999 9999999999999999999999999999999998652        124678999999999999


Q ss_pred             hcCCCCCceeccCCCCCeeecCC-------------------CCeEEeeccCceecCCCCcceeecccccCCCccCcccc
Q 044022           82 HFGFPRPIVLRNFKTQNILFNEE-------------------NVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYI  142 (241)
Q Consensus        82 h~~~~~~ivh~dl~~~nil~~~~-------------------~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~  142 (241)
                      |   +.+++||||||+||+++.+                   ..++|+|||.+.......      ...+++.|+|||.+
T Consensus       132 H---~~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~------~~~gt~~y~aPE~~  202 (289)
T 1x8b_A          132 H---SMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVTRISSPQ------VEEGDSRFLANEVL  202 (289)
T ss_dssp             H---HTTEECSCCSGGGEEEC--------------------CCCEEECCCTTCEETTCSC------CCCCCGGGCCHHHH
T ss_pred             H---hCCEeecCCCHHHEEEcCCCCCcccccccccccccCCceEEEEcccccccccCCcc------ccCCCccccChhHh
Confidence            9   8999999999999999844                   479999999998765432      23588999999999


Q ss_pred             ccc-CCCcchhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHH
Q 044022          143 SIC-VLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHAS  221 (241)
Q Consensus       143 ~~~-~~~~~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (241)
                      .+. .++.++||||||+++|+|++|.+|+....            .... ...+...     .+....        +..+
T Consensus       203 ~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~------------~~~~-~~~~~~~-----~~~~~~--------~~~~  256 (289)
T 1x8b_A          203 QENYTHLPKADIFALALTVVCAAGAEPLPRNGD------------QWHE-IRQGRLP-----RIPQVL--------SQEF  256 (289)
T ss_dssp             TTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSSH------------HHHH-HHTTCCC-----CCSSCC--------CHHH
T ss_pred             cCCCCCCchhhHHHHHHHHHHHhcCCCCCcchh------------HHHH-HHcCCCC-----CCCccc--------CHHH
Confidence            866 56689999999999999999988764310            0111 1111111     111222        2578


Q ss_pred             HHHHHHhccCCCCCCCCCCC
Q 044022          222 AQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       222 ~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      .+++.+||+.||++|||+.|
T Consensus       257 ~~li~~~l~~dp~~Rps~~~  276 (289)
T 1x8b_A          257 TELLKVMIHPDPERRPSAMA  276 (289)
T ss_dssp             HHHHHHHTCSSGGGSCCHHH
T ss_pred             HHHHHHHhCCCcccCCCHHH
Confidence            99999999999999999853

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=100.00  E-value=3.4e-38  Score=255.03  Aligned_cols=213  Identities=21%  Similarity=0.254  Sum_probs=157.2

Q ss_pred             HHHHHHHHHHHHhcC---CCcccceeeeeeeCC-----cceEEEEecCCCCHHHhhcCCCc------hHHHHHHHHHHHh
Q 044022           13 YGSCINNITYAAQMS---HNHILKRIGCCLQTP-----IPILVFQSVEYGTLRDCIFGAPL------PRLKIASDIVNSL   78 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~---h~~iv~~~~~~~~~~-----~~~lv~e~~~~~sL~~~l~~~~~------~~~~~~~~i~~~l   78 (241)
                      ...+.+|+.++++++   ||||+++++++....     ..++|+||+. ++|.+++.....      .+..++.|++.||
T Consensus        55 ~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al  133 (308)
T 3g33_A           55 PISTVREVALLRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVD-QDLRTYLDKAPPPGLPAETIKDLMRQFLRGL  133 (308)
T ss_dssp             CHHHHHHHHHHHHHHHHCCTTBCCEEEEEEECCSSSEEEEEEEEECCC-CBHHHHHHTCCTTCSCHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhcCCCCeEEeeeeeeccCCCCceeEEEEehhhh-cCHHHHHhhccCCCCCHHHHHHHHHHHHHHH
Confidence            456778888888774   999999999998765     5799999997 699999876532      4678999999999


Q ss_pred             chhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHH
Q 044022           79 AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGA  158 (241)
Q Consensus        79 ~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~  158 (241)
                      .|||   +.+++||||||+||+++.++.+||+|||.+........   .....+|+.|+|||++.+..++.++||||||+
T Consensus       134 ~~lH---~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~  207 (308)
T 3g33_A          134 DFLH---ANCIVHRDLKPENILVTSGGTVKLADFGLARIYSYQMA---LTPVVVTLWYRAPEVLLQSTYATPVDMWSVGC  207 (308)
T ss_dssp             HHHH---HTTCCCSCCCTTTEEECTTSCEEECSCSCTTTSTTCCC---SGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHH
T ss_pred             HHHH---HCCcccCCCCHHHEEEcCCCCEEEeeCccccccCCCcc---cCCccccccccCchHHcCCCCCchHHHHHHHH
Confidence            9999   89999999999999999999999999999976543322   23457899999999999899999999999999


Q ss_pred             HHHHHHhcCcccccccccCCCcccchHHHHHHHhhh---cccCCCCC------CccccCCCch---hHHHHHHHHHHHHH
Q 044022          159 FLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLED---KRFTGIPA------PIIVQDIPCI---EKEQQLHASAQLTL  226 (241)
Q Consensus       159 ~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~------~~~~~~~~~~---~~~~~~~~~~~l~~  226 (241)
                      ++|+|++|+.||....         ..+........   ......+.      .......+..   .....++.+.+|+.
T Consensus       208 il~~l~~g~~pf~~~~---------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~  278 (308)
T 3g33_A          208 IFAEMFRRKPLFCGNS---------EADQLGKIFDLIGLPPEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLL  278 (308)
T ss_dssp             HHHHTTTSSCSCCCSS---------HHHHHHHHHHHHCCCCTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHH
T ss_pred             HHHHHHhCCCCCCCCC---------HHHHHHHHHHHhCCCChhhccchhhccccccCCCCCCcHHHhCccccHHHHHHHH
Confidence            9999999999995521         11111111110   00000000      0000000000   00123367889999


Q ss_pred             HhccCCCCCCCCCCC
Q 044022          227 ECVNNSPEDRPTMVD  241 (241)
Q Consensus       227 ~cl~~~p~~Rpt~~e  241 (241)
                      +||+.||++|||+.|
T Consensus       279 ~~L~~dP~~R~t~~e  293 (308)
T 3g33_A          279 EMLTFNPHKRISAFR  293 (308)
T ss_dssp             HHTCSSTTTSCCHHH
T ss_pred             HHhcCCCccCCCHHH
Confidence            999999999999853

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.7e-38  Score=258.87  Aligned_cols=215  Identities=23%  Similarity=0.317  Sum_probs=160.3

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCC--cceEEEEecCCCCHHHhhcCCC--c---hHHHHHHHHHHHhchhhc
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTP--IPILVFQSVEYGTLRDCIFGAP--L---PRLKIASDIVNSLAYLHF   83 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--~~~lv~e~~~~~sL~~~l~~~~--~---~~~~~~~~i~~~l~~lh~   83 (241)
                      ...+.+.+|++++++++||||+++++++...+  ..++||||+++++|.+++....  .   ..+.++.+++.||.||| 
T Consensus        84 ~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH-  162 (326)
T 2w1i_A           84 EHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLG-  162 (326)
T ss_dssp             HHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CCEEEECCCTTCBHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCceEEEEECCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH-
Confidence            45678999999999999999999999987644  7899999999999999986542  1   46789999999999999 


Q ss_pred             CCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCccee-ecccccCCCccCcccccccCCCcchhhHHHHHHHHH
Q 044022           84 GFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHIT-TDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFE  162 (241)
Q Consensus        84 ~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~-~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~  162 (241)
                        +.+++|+||||+||+++.++.++|+|||.+........... .....++..|+|||.+.+..++.++||||||+++|+
T Consensus       163 --~~~ivH~dikp~NIli~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~e  240 (326)
T 2w1i_A          163 --TKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYE  240 (326)
T ss_dssp             --HTTEECSCCCGGGEEEEETTEEEECCCTTCEECCSSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHH
T ss_pred             --hCCEeccCCCcceEEEcCCCcEEEecCcchhhccccccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHH
Confidence              89999999999999999999999999999987655432211 223346777999999998889999999999999999


Q ss_pred             HHhcCcccccccccC------CCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCC
Q 044022          163 LLAGRIHIWDLLKDT------HDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDR  236 (241)
Q Consensus       163 ~~~g~~p~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~R  236 (241)
                      |++|..|+.......      .......................     ..        ..+..+.+++.+||+.||++|
T Consensus       241 l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--------~~~~~l~~li~~cl~~dP~~R  307 (326)
T 2w1i_A          241 LFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPR-----PD--------GCPDEIYMIMTECWNNNVNQR  307 (326)
T ss_dssp             HHHTTCGGGSHHHHHHHHHCTTCCTHHHHHHHHHHHHTTCCCCC-----CT--------TCCHHHHHHHHHHSCSSGGGS
T ss_pred             HHhcCCCCCCCHHHHHHhhccccchhhhHHHHHHHhhcCCCCCC-----CC--------cccHHHHHHHHHHcCCChhhC
Confidence            999999986421100      00000001111111111111111     11        223678999999999999999


Q ss_pred             CCCCC
Q 044022          237 PTMVD  241 (241)
Q Consensus       237 pt~~e  241 (241)
                      ||+.|
T Consensus       308 ps~~e  312 (326)
T 2w1i_A          308 PSFRD  312 (326)
T ss_dssp             CCHHH
T ss_pred             cCHHH
Confidence            99753

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=100.00  E-value=5.8e-38  Score=255.86  Aligned_cols=156  Identities=16%  Similarity=0.247  Sum_probs=135.8

Q ss_pred             ccHHHHHHHHHHHHhcC-CCcccceeeeeee--CCcceEEEEecCCCCHHHhhcCCCc-hHHHHHHHHHHHhchhhcCCC
Q 044022           11 HTYGSCINNITYAAQMS-HNHILKRIGCCLQ--TPIPILVFQSVEYGTLRDCIFGAPL-PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~-h~~iv~~~~~~~~--~~~~~lv~e~~~~~sL~~~l~~~~~-~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ...+.+.+|++++++++ ||||+++++++..  ....++||||+.+++|.+++..... ....++.+++.||.|||   +
T Consensus        72 ~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~  148 (330)
T 3nsz_A           72 VKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCH---S  148 (330)
T ss_dssp             CCHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEEEECCCCCCHHHHGGGCCHHHHHHHHHHHHHHHHHHH---H
T ss_pred             cchHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEEEeccCchhHHHHHHhCCHHHHHHHHHHHHHHHHHHH---h
Confidence            34678999999999997 9999999999987  5678999999999999999876544 56789999999999999   8


Q ss_pred             CCceeccCCCCCeeecCCC-CeEEeeccCceecCCCCcceeecccccCCCccCcccccc-cCCCcchhhHHHHHHHHHHH
Q 044022           87 RPIVLRNFKTQNILFNEEN-VAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI-CVLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~-~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~~~~~~  164 (241)
                      .+++||||||+|||++.++ .++|+|||.+........   .....++..|+|||.+.+ ..++.++||||||+++|+|+
T Consensus       149 ~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll  225 (330)
T 3nsz_A          149 MGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQE---YNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMI  225 (330)
T ss_dssp             TTEECCCCSGGGEEEETTTTEEEECCCTTCEECCTTCC---CCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHH
T ss_pred             CCeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCCCc---cccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHH
Confidence            9999999999999999777 899999999986654332   133468889999999877 56899999999999999999


Q ss_pred             hcCccccc
Q 044022          165 AGRIHIWD  172 (241)
Q Consensus       165 ~g~~p~~~  172 (241)
                      +|+.||..
T Consensus       226 ~g~~p~~~  233 (330)
T 3nsz_A          226 FRKEPFFH  233 (330)
T ss_dssp             HTCSSSSC
T ss_pred             hCCCCccc
Confidence            99999954

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=100.00  E-value=1.8e-38  Score=262.51  Aligned_cols=203  Identities=24%  Similarity=0.383  Sum_probs=159.4

Q ss_pred             HHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCCC
Q 044022           13 YGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        13 ~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      .+.+.+|+.+++++ +||||+++++++...+..++||||+++++|.+++....    .....++.+++.||.|||   +.
T Consensus       143 ~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~l~~~~~~~i~~qi~~~L~~LH---~~  219 (365)
T 2y7j_A          143 REATRRETHILRQVAGHPHIITLIDSYESSSFMFLVFDLMRKGELFDYLTEKVALSEKETRSIMRSLLEAVSFLH---AN  219 (365)
T ss_dssp             HHHHHHHHHHHHHHTTCTTBCCEEEEEEBSSEEEEEECCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---HT
T ss_pred             HHHHHHHHHHHHHhcCCCCEeEEEEEEeeCCEEEEEEEeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hC
Confidence            56688999999999 89999999999999999999999999999999986432    246789999999999999   89


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc------cCCCcchhhHHHHHHHH
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI------CVLNEKSNVFSFGAFLF  161 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~------~~~~~~~Di~s~G~~~~  161 (241)
                      +++|+||||+||+++.++.++|+|||++.........   ....||+.|+|||++.+      ..++.++||||||+++|
T Consensus       220 gi~H~Dlkp~NIl~~~~~~ikl~DfG~~~~~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~  296 (365)
T 2y7j_A          220 NIVHRDLKPENILLDDNMQIRLSDFGFSCHLEPGEKL---RELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILF  296 (365)
T ss_dssp             TEECSCCSGGGEEECTTCCEEECCCTTCEECCTTCCB---CCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHH
T ss_pred             CeecCCCCHHHEEECCCCCEEEEecCcccccCCCccc---ccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHH
Confidence            9999999999999999999999999998876543321   33578999999999863      35788999999999999


Q ss_pred             HHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          162 ELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       162 ~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +|++|..||....         ......... .+... ...+         .....+..+.+++.+||+.||++|||++|
T Consensus       297 ell~g~~pf~~~~---------~~~~~~~i~-~~~~~-~~~~---------~~~~~~~~~~~li~~~L~~dP~~Rps~~e  356 (365)
T 2y7j_A          297 TLLAGSPPFWHRR---------QILMLRMIM-EGQYQ-FSSP---------EWDDRSSTVKDLISRLLQVDPEARLTAEQ  356 (365)
T ss_dssp             HHHHSSCSSCCSS---------HHHHHHHHH-HTCCC-CCHH---------HHSSSCHHHHHHHHHHSCSSTTTSCCHHH
T ss_pred             HHHHCCCCCCCCC---------HHHHHHHHH-hCCCC-CCCc---------ccccCCHHHHHHHHHHcCCChhHCcCHHH
Confidence            9999999996521         111111111 11110 0000         00122356889999999999999999853

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=100.00  E-value=2.9e-38  Score=252.19  Aligned_cols=194  Identities=23%  Similarity=0.342  Sum_probs=155.6

Q ss_pred             HHHHHHHHHHHhcCCCcccceeeeeee----------------CCcceEEEEecCCCCHHHhhcCC---Cc---hHHHHH
Q 044022           14 GSCINNITYAAQMSHNHILKRIGCCLQ----------------TPIPILVFQSVEYGTLRDCIFGA---PL---PRLKIA   71 (241)
Q Consensus        14 ~~~~~e~~~l~~l~h~~iv~~~~~~~~----------------~~~~~lv~e~~~~~sL~~~l~~~---~~---~~~~~~   71 (241)
                      +.+.+|++++++++||||+++++++..                ....++||||+++++|.+++...   ..   ....++
T Consensus        49 ~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~  128 (284)
T 2a19_B           49 EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELF  128 (284)
T ss_dssp             GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC---------CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCEEEEeeeEeccccCcccccccccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHH
Confidence            567899999999999999999998864                34579999999999999998543   11   467899


Q ss_pred             HHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcch
Q 044022           72 SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKS  151 (241)
Q Consensus        72 ~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~  151 (241)
                      .+++.||.|||   +.+++|+||||+||+++.++.++|+|||.+.........   ....+++.|+|||.+.+..++.++
T Consensus       129 ~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~  202 (284)
T 2a19_B          129 EQITKGVDYIH---SKKLINRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGKR---TRSKGTLRYMSPEQISSQDYGKEV  202 (284)
T ss_dssp             HHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCCTTCEESSCCSCC---CCCCSCCTTSCHHHHHCSCCCTHH
T ss_pred             HHHHHHHHHHH---hCCeeeccCCHHHEEEcCCCCEEECcchhheeccccccc---cccCCcccccChhhhccCCCcchh
Confidence            99999999999   899999999999999999999999999999876554321   234689999999999988899999


Q ss_pred             hhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccC
Q 044022          152 NVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNN  231 (241)
Q Consensus       152 Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~  231 (241)
                      ||||||+++|+|++|..|+...           ....... .....        ...        .+..+.+++.+||+.
T Consensus       203 Di~slG~il~~l~~~~~~~~~~-----------~~~~~~~-~~~~~--------~~~--------~~~~~~~li~~~l~~  254 (284)
T 2a19_B          203 DLYALGLILAELLHVCDTAFET-----------SKFFTDL-RDGII--------SDI--------FDKKEKTLLQKLLSK  254 (284)
T ss_dssp             HHHHHHHHHHHHHSCCSSHHHH-----------HHHHHHH-HTTCC--------CTT--------SCHHHHHHHHHHTCS
T ss_pred             hhHHHHHHHHHHHhcCCcchhH-----------HHHHHHh-hcccc--------ccc--------CCHHHHHHHHHHccC
Confidence            9999999999999999887431           0111111 11111        111        125688999999999


Q ss_pred             CCCCCCCCCC
Q 044022          232 SPEDRPTMVD  241 (241)
Q Consensus       232 ~p~~Rpt~~e  241 (241)
                      ||++|||+.|
T Consensus       255 dp~~Rps~~e  264 (284)
T 2a19_B          255 KPEDRPNTSE  264 (284)
T ss_dssp             SGGGSCCHHH
T ss_pred             ChhhCcCHHH
Confidence            9999999753

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=100.00  E-value=3.4e-38  Score=278.27  Aligned_cols=205  Identities=20%  Similarity=0.278  Sum_probs=157.6

Q ss_pred             ccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC--c---hHHHHHHHHHHHhchhhc
Q 044022            9 HRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP--L---PRLKIASDIVNSLAYLHF   83 (241)
Q Consensus         9 ~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~--~---~~~~~~~~i~~~l~~lh~   83 (241)
                      .....+.|.+|+.++++++||||+++++++. .+..++||||+++|+|.+++....  .   ..+.++.+++.||.||| 
T Consensus       431 ~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~~lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH-  508 (656)
T 2j0j_A          431 SDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLE-  508 (656)
T ss_dssp             CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEEECCTTCBHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHH-
T ss_pred             CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-cCceEEEEEcCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH-
Confidence            3344578999999999999999999999985 456899999999999999986442  1   46788999999999999 


Q ss_pred             CCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHH
Q 044022           84 GFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL  163 (241)
Q Consensus        84 ~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~  163 (241)
                        +.+++||||||+|||++.++.+||+|||++......... ......+++.|+|||++.+..++.++||||||+++|+|
T Consensus       509 --~~givHrDikp~NILl~~~~~vkL~DFG~a~~~~~~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~el  585 (656)
T 2j0j_A          509 --SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYY-KASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEI  585 (656)
T ss_dssp             --HTTCCCSCCSGGGEEEEETTEEEECCCCCCCSCCC-----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred             --hCCccccccchHhEEEeCCCCEEEEecCCCeecCCCcce-eccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHH
Confidence              899999999999999999999999999999766443221 12234567889999999988999999999999999999


Q ss_pred             Hh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          164 LA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       164 ~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ++ |..||....         ..+....... +....     ....        .+..+.+++.+||+.||++|||+.|
T Consensus       586 lt~g~~Pf~~~~---------~~~~~~~i~~-~~~~~-----~~~~--------~~~~l~~li~~~l~~dP~~RPs~~e  641 (656)
T 2j0j_A          586 LMHGVKPFQGVK---------NNDVIGRIEN-GERLP-----MPPN--------CPPTLYSLMTKCWAYDPSRRPRFTE  641 (656)
T ss_dssp             HTTSCCTTTTCC---------HHHHHHHHHH-TCCCC-----CCTT--------CCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             HHcCCCCCCCCC---------HHHHHHHHHc-CCCCC-----CCcc--------ccHHHHHHHHHHcCCChhHCcCHHH
Confidence            97 999996421         1122222211 11111     1111        2257889999999999999999753

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=100.00  E-value=1.8e-37  Score=256.56  Aligned_cols=198  Identities=15%  Similarity=0.118  Sum_probs=159.3

Q ss_pred             ccHHHHHHHHHHHHhcC---CCcccceeeeeeeCCcceEEEEecCCCCHHHhhcC------CCc---hHHHHHHHHHHHh
Q 044022           11 HTYGSCINNITYAAQMS---HNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFG------APL---PRLKIASDIVNSL   78 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~---h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~------~~~---~~~~~~~~i~~~l   78 (241)
                      ....++.+|+++++.++   |+||+++++++...+..++||||+++|+|.+++..      ...   .+..++.|++.||
T Consensus       106 ~~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L  185 (365)
T 3e7e_A          106 ANPWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMI  185 (365)
T ss_dssp             CCHHHHHHHHHHHHHSCGGGGGGBCCEEEEEECSSCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHhhhhhhhhhhhhheeeecCCCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHH
Confidence            35667889999999997   89999999999999999999999999999999863      111   4788999999999


Q ss_pred             chhhcCCCCCceeccCCCCCeeecC-----------CCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCC
Q 044022           79 AYLHFGFPRPIVLRNFKTQNILFNE-----------ENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVL  147 (241)
Q Consensus        79 ~~lh~~~~~~ivh~dl~~~nil~~~-----------~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~  147 (241)
                      .|||   +++|+||||||+|||++.           ++.+||+|||++................||+.|+|||++.+..+
T Consensus       186 ~~lH---~~~ivHrDiKp~NIll~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  262 (365)
T 3e7e_A          186 EQVH---DCEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPW  262 (365)
T ss_dssp             HHHH---TTTEECCCCSGGGEEECGGGTCC------CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCB
T ss_pred             HHHh---hCCeecCCCCHHHEEecccccCccccccccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCC
Confidence            9999   899999999999999998           89999999999976543333333455679999999999999999


Q ss_pred             CcchhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHH
Q 044022          148 NEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLE  227 (241)
Q Consensus       148 ~~~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  227 (241)
                      +.++||||||+++|+|++|+.||.......                 ......     ....+      ..+.+.+++..
T Consensus       263 ~~~~DiwslG~il~elltg~~pf~~~~~~~-----------------~~~~~~-----~~~~~------~~~~~~~~~~~  314 (365)
T 3e7e_A          263 NYQIDYFGVAATVYCMLFGTYMKVKNEGGE-----------------CKPEGL-----FRRLP------HLDMWNEFFHV  314 (365)
T ss_dssp             STHHHHHHHHHHHHHHHHSSCCCEEEETTE-----------------EEECSC-----CTTCS------SHHHHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHhCCCccccCCCCc-----------------eeechh-----ccccC------cHHHHHHHHHH
Confidence            999999999999999999999985421110                 000000     00011      12467789999


Q ss_pred             hccCCCCCCCCC
Q 044022          228 CVNNSPEDRPTM  239 (241)
Q Consensus       228 cl~~~p~~Rpt~  239 (241)
                      |++.+|.+|++.
T Consensus       315 ~l~~~p~~r~~~  326 (365)
T 3e7e_A          315 MLNIPDCHHLPS  326 (365)
T ss_dssp             HHCCCCTTCCCC
T ss_pred             HcCCCCCCcchH
Confidence            999999999764

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=100.00  E-value=4.5e-38  Score=260.06  Aligned_cols=168  Identities=21%  Similarity=0.229  Sum_probs=138.3

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeC-----CcceEEEEecCCCCHHHhhcCCCc---hHHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQT-----PIPILVFQSVEYGTLRDCIFGAPL---PRLKIAS   72 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-----~~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~   72 (241)
                      ||.+.........+.+.+|++++++++||||+++++++...     ...++|+||+. ++|.+++.....   .+..++.
T Consensus        57 iK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~iv~e~~~-~~L~~~l~~~~~~~~~~~~i~~  135 (364)
T 3qyz_A           57 IKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLME-TDLYKLLKTQHLSNDHICYFLY  135 (364)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCEEEEEECCS-EEHHHHHHHCCCCHHHHHHHHH
T ss_pred             EEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceEEEEEcccC-cCHHHHHHhCCCCHHHHHHHHH
Confidence            35554433444567899999999999999999999999754     36899999997 699998876543   4678999


Q ss_pred             HHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcce-eecccccCCCccCccccccc-CCCcc
Q 044022           73 DIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHI-TTDRVIGTRGYSAPEYISIC-VLNEK  150 (241)
Q Consensus        73 ~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~-~~~~~~~~~~~~aPE~~~~~-~~~~~  150 (241)
                      |++.||.|||   +.+++||||||+||+++.++.++|+|||.+.......... ......||+.|+|||++.+. .++.+
T Consensus       136 qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~  212 (364)
T 3qyz_A          136 QILRGLKYIH---SANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKS  212 (364)
T ss_dssp             HHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTH
T ss_pred             HHHHHHHHHH---HCCeecCCCChHhEEECCCCCEEEEeCcceEecCCCCCccccccccccccCCCCCHHhcCCCCCCcc
Confidence            9999999999   8999999999999999999999999999998665332111 12334789999999987654 58999


Q ss_pred             hhhHHHHHHHHHHHhcCccccc
Q 044022          151 SNVFSFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       151 ~Di~s~G~~~~~~~~g~~p~~~  172 (241)
                      +||||||+++|+|++|+.||..
T Consensus       213 ~DiwslG~il~ell~g~~pf~~  234 (364)
T 3qyz_A          213 IDIWSVGCILAEMLSNRPIFPG  234 (364)
T ss_dssp             HHHHHHHHHHHHHHHSSCSSCC
T ss_pred             hhHHHHHHHHHHHHHCCCCCCC
Confidence            9999999999999999999965

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=100.00  E-value=5.7e-38  Score=257.66  Aligned_cols=211  Identities=18%  Similarity=0.222  Sum_probs=159.9

Q ss_pred             HHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHh------hcCC--C-c---hHHHHHHHHHHHhchh
Q 044022           14 GSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDC------IFGA--P-L---PRLKIASDIVNSLAYL   81 (241)
Q Consensus        14 ~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~------l~~~--~-~---~~~~~~~~i~~~l~~l   81 (241)
                      +.+.+|++++++++||||+++++++...+..++||||+++++|.++      +...  . .   .+..++.+++.||.||
T Consensus        88 ~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~l  167 (348)
T 2pml_X           88 DDFKNELQIITDIKNEYCLTCEGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYI  167 (348)
T ss_dssp             HHHHHHHHHHTTCCCTTBCCCSEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCcceEEEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHH
Confidence            8899999999999999999999999999999999999999999998      6542  1 1   4678999999999999


Q ss_pred             hcCCC-CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc-CCCc-chhhHHHHH
Q 044022           82 HFGFP-RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-VLNE-KSNVFSFGA  158 (241)
Q Consensus        82 h~~~~-~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-~~~~-~~Di~s~G~  158 (241)
                      |   + .+++|+||+|+||+++.++.++|+|||.+......    ......++..|+|||.+.+. .++. ++||||||+
T Consensus       168 H---~~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~  240 (348)
T 2pml_X          168 H---NEKNICHRDVKPSNILMDKNGRVKLSDFGESEYMVDK----KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGI  240 (348)
T ss_dssp             H---HTSCEECCCCCGGGEEECTTSCEEECCCTTCEECBTT----EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHH
T ss_pred             h---ccCCEeecCCChHhEEEcCCCcEEEeccccccccccc----cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHH
Confidence            9   7 99999999999999999999999999999865443    22345689999999999877 5665 999999999


Q ss_pred             HHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCc--c----ccCCCchhHHHHHHHHHHHHHHhccCC
Q 044022          159 FLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPI--I----VQDIPCIEKEQQLHASAQLTLECVNNS  232 (241)
Q Consensus       159 ~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~l~~~cl~~~  232 (241)
                      ++|+|++|..||......        .+....... +.. ..+...  .    ............+..+.+++.+||+.|
T Consensus       241 il~~l~~g~~pf~~~~~~--------~~~~~~i~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~d  310 (348)
T 2pml_X          241 CLYVMFYNVVPFSLKISL--------VELFNNIRT-KNI-EYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKN  310 (348)
T ss_dssp             HHHHHHHSSCSSCCSSCS--------HHHHHHHTS-CCC-CCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSS
T ss_pred             HHHHHHhCCCCCCCCCcH--------HHHHHHHhc-cCc-CCccchhhhhccccccccccchhhcCHHHHHHHHHHccCC
Confidence            999999999999652110        111222111 111 111000  0    000000000123367899999999999


Q ss_pred             CCCCCCCCC
Q 044022          233 PEDRPTMVD  241 (241)
Q Consensus       233 p~~Rpt~~e  241 (241)
                      |++|||++|
T Consensus       311 P~~Rps~~e  319 (348)
T 2pml_X          311 PAERITSED  319 (348)
T ss_dssp             GGGSCCHHH
T ss_pred             hhhCCCHHH
Confidence            999999853

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.1e-38  Score=261.29  Aligned_cols=204  Identities=19%  Similarity=0.181  Sum_probs=156.8

Q ss_pred             ccHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCC
Q 044022           11 HTYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ...+.+.+|+++++++ .||||+++++++...+..++||||+++++|.+++....    .....++.|++.||.|||   
T Consensus       100 ~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH---  176 (355)
T 1vzo_A          100 KTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLH---  176 (355)
T ss_dssp             SSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHH---
T ss_pred             hHHHHHHHHHHHHHHccCCCceeEEEEEEeeCceEEEEeecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            3456778899999999 69999999999999999999999999999999986432    246778999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc--cCCCcchhhHHHHHHHHHH
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI--CVLNEKSNVFSFGAFLFEL  163 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~--~~~~~~~Di~s~G~~~~~~  163 (241)
                      +.+++||||||+|||++.++.+||+|||++.......... .....||+.|+|||++.+  ..++.++||||||+++|+|
T Consensus       177 ~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~el  255 (355)
T 1vzo_A          177 KLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETER-AYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYEL  255 (355)
T ss_dssp             HTTCCCCCCCGGGEEECTTSCEEESCSSEEEECCGGGGGG-GCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHH
T ss_pred             HCCcccCCCCHHHEEECCCCcEEEeeCCCCeecccCCCCc-ccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHH
Confidence            8999999999999999999999999999997654332211 233568999999999985  3478899999999999999


Q ss_pred             HhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCC
Q 044022          164 LAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT  238 (241)
Q Consensus       164 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt  238 (241)
                      ++|+.||......     ..............       +....        ..+..+.+|+.+||..||++||+
T Consensus       256 l~g~~pf~~~~~~-----~~~~~~~~~~~~~~-------~~~~~--------~~~~~~~~li~~~L~~dP~~R~~  310 (355)
T 1vzo_A          256 LTGASPFTVDGEK-----NSQAEISRRILKSE-------PPYPQ--------EMSALAKDLIQRLLMKDPKKRLG  310 (355)
T ss_dssp             HHSSCTTSCTTSC-----CCHHHHHHHHHHCC-------CCCCT--------TSCHHHHHHHHHHTCSSGGGSTT
T ss_pred             HHCCCCCccCCcc-----chHHHHHHHHhccC-------CCCCc--------ccCHHHHHHHHHHhhhCHHHhcC
Confidence            9999999642111     11122222221111       01111        12256889999999999999993

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=100.00  E-value=2.5e-38  Score=261.83  Aligned_cols=163  Identities=21%  Similarity=0.290  Sum_probs=124.0

Q ss_pred             Cccccccc-ccccHHHHHHHHHHHHhcCCCcccceeeeeeeC------CcceEEEEecCCCCHHHhhcCCCc---hHHHH
Q 044022            1 MKFYGHEY-HRHTYGSCINNITYAAQMSHNHILKRIGCCLQT------PIPILVFQSVEYGTLRDCIFGAPL---PRLKI   70 (241)
Q Consensus         1 iK~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~------~~~~lv~e~~~~~sL~~~l~~~~~---~~~~~   70 (241)
                      ||.+.... ......++.+|++++++++||||+++++++...      ...++|+|++ +++|.+++.....   ....+
T Consensus        59 iK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~l~~~~~~~i  137 (367)
T 2fst_X           59 VKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLM-GADLNNIVKCQKLTDDHVQFL  137 (367)
T ss_dssp             EEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCCCEEEEECC-CEECC-----CCCCHHHHHHH
T ss_pred             EEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCCeEEEEeccc-CCCHHHHHhcCCCCHHHHHHH
Confidence            35444332 223467788999999999999999999998754      5679999999 6899998876533   46789


Q ss_pred             HHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc-cCCCc
Q 044022           71 ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI-CVLNE  149 (241)
Q Consensus        71 ~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-~~~~~  149 (241)
                      +.||+.||.|||   +.+++||||||+|||++.++.+||+|||++......     .....+|+.|+|||++.+ ..++.
T Consensus       138 ~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kL~DFG~a~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~  209 (367)
T 2fst_X          138 IYQILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTADE-----MTGYVATRWYRAPEIMLNWMHYNQ  209 (367)
T ss_dssp             HHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECC--------------------CCCTTCCHHHHTTCCSCCT
T ss_pred             HHHHHHHHHHHH---HCCeeeCCCCHhhEEECCCCCEEEeecccccccccc-----CCCcCcCcCccChHHHcCCcCCCc
Confidence            999999999999   899999999999999999999999999999765432     133468999999999887 57899


Q ss_pred             chhhHHHHHHHHHHHhcCccccc
Q 044022          150 KSNVFSFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       150 ~~Di~s~G~~~~~~~~g~~p~~~  172 (241)
                      ++|||||||++|+|++|+.||..
T Consensus       210 ~~DiwslG~il~ell~g~~pf~~  232 (367)
T 2fst_X          210 TVDIWSVGCIMAELLTGRTLFPG  232 (367)
T ss_dssp             THHHHHHHHHHHHHHHSSCSCCC
T ss_pred             hhhHHHHHHHHHHHHhCCCCCCC
Confidence            99999999999999999999954

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=100.00  E-value=6.6e-38  Score=257.79  Aligned_cols=168  Identities=20%  Similarity=0.182  Sum_probs=136.1

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeC-----CcceEEEEecCCCCHHHhhcCCCc---hHHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQT-----PIPILVFQSVEYGTLRDCIFGAPL---PRLKIAS   72 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-----~~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~   72 (241)
                      ||.+..........++.+|++++++++||||+++++++...     ...++|+||+. ++|.+++.....   ....++.
T Consensus        41 iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~  119 (353)
T 2b9h_A           41 IKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEVYIIQELMQ-TDLHRVISTQMLSDDHIQYFIY  119 (353)
T ss_dssp             EEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCEEEEECCCS-EEHHHHHHHCCCCHHHHHHHHH
T ss_pred             EEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceEEEEEeccC-ccHHHHHhhcCCCHHHHHHHHH
Confidence            35554333334566788999999999999999999988754     57899999997 699998876433   4678999


Q ss_pred             HHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcce--------eecccccCCCccCcccccc
Q 044022           73 DIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHI--------TTDRVIGTRGYSAPEYISI  144 (241)
Q Consensus        73 ~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~--------~~~~~~~~~~~~aPE~~~~  144 (241)
                      +++.||.|||   +.+++||||||+||+++.++.++|+|||.+..........        ......||+.|+|||++..
T Consensus       120 qi~~~L~~LH---~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~  196 (353)
T 2b9h_A          120 QTLRAVKVLH---GSNVIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLT  196 (353)
T ss_dssp             HHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCCTTCEECC----------------CCCCCCGGGCCHHHHHS
T ss_pred             HHHHHHHHHH---HCCeecCCCCHHHeEEcCCCcEEEEecccccccccccccccCccccccchhhccccccccCCeeecc
Confidence            9999999999   8999999999999999999999999999998765322111        1123467899999998764


Q ss_pred             -cCCCcchhhHHHHHHHHHHHhcCccccc
Q 044022          145 -CVLNEKSNVFSFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       145 -~~~~~~~Di~s~G~~~~~~~~g~~p~~~  172 (241)
                       ..++.++||||||+++|+|++|+.||..
T Consensus       197 ~~~~~~~~Di~slG~il~~l~~g~~pf~~  225 (353)
T 2b9h_A          197 SAKYSRAMDVWSCGCILAELFLRRPIFPG  225 (353)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred             CCCccchhhHHHHHHHHHHHHhCCCCCCC
Confidence             6788999999999999999999999965

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=100.00  E-value=3e-37  Score=253.87  Aligned_cols=158  Identities=18%  Similarity=0.228  Sum_probs=131.9

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeee--------CCcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHHH
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQ--------TPIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVNS   77 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~--------~~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~~   77 (241)
                      .....+.+|++++++++||||+++++++..        .+..++||||+. ++|.+.+....     ..+..++.|++.|
T Consensus        58 ~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~i~~qi~~~  136 (351)
T 3mi9_A           58 GFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCE-HDLAGLLSNVLVKFTLSEIKRVMQMLLNG  136 (351)
T ss_dssp             SSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC--------CEEEEEEECCS-EEHHHHHHCTTSCCCHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHhccCCCcccHhheeeccccccccCCceEEEEEeccC-CCHHHHHhhccCCCCHHHHHHHHHHHHHH
Confidence            345678899999999999999999999987        346899999997 57777765432     1467899999999


Q ss_pred             hchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCc--ceeecccccCCCccCcccccc-cCCCcchhhH
Q 044022           78 LAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGET--HITTDRVIGTRGYSAPEYISI-CVLNEKSNVF  154 (241)
Q Consensus        78 l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~--~~~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~  154 (241)
                      |.|||   +.+++||||||+|||++.++.+||+|||.+........  ........+|+.|+|||++.+ ..++.++|||
T Consensus       137 l~~LH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Diw  213 (351)
T 3mi9_A          137 LYYIH---RNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLW  213 (351)
T ss_dssp             HHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHH
T ss_pred             HHHHH---HCCeeCCCCCHHHEEEcCCCCEEEccchhcccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHH
Confidence            99999   89999999999999999999999999999986643211  112234568999999999876 4579999999


Q ss_pred             HHHHHHHHHHhcCccccc
Q 044022          155 SFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       155 s~G~~~~~~~~g~~p~~~  172 (241)
                      |||+++|+|++|..||..
T Consensus       214 slG~il~ell~g~~pf~~  231 (351)
T 3mi9_A          214 GAGCIMAEMWTRSPIMQG  231 (351)
T ss_dssp             HHHHHHHHHHHSSCSCCC
T ss_pred             HHHHHHHHHHhCCCCCCC
Confidence            999999999999999965

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=100.00  E-value=1.6e-37  Score=249.29  Aligned_cols=209  Identities=16%  Similarity=0.205  Sum_probs=157.1

Q ss_pred             HHHHHHHHHHHHhcCCCcccceeeee-eeCCcceEEEEecCCCCHHHhhcCC--Cc---hHHHHHHHHHHHhchhhcCCC
Q 044022           13 YGSCINNITYAAQMSHNHILKRIGCC-LQTPIPILVFQSVEYGTLRDCIFGA--PL---PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~iv~~~~~~-~~~~~~~lv~e~~~~~sL~~~l~~~--~~---~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      .+++.+|++++++++|++++..+..+ ...+..++||||+ +++|.+++...  ..   ....++.+++.||.|||   +
T Consensus        48 ~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~  123 (296)
T 4hgt_A           48 HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIH---S  123 (296)
T ss_dssp             CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHH---H
T ss_pred             chHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEEEcc-CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            34688999999999998877766655 5667789999999 89999998632  22   56789999999999999   8


Q ss_pred             CCceeccCCCCCeee---cCCCCeEEeeccCceecCCCCcc-----eeecccccCCCccCcccccccCCCcchhhHHHHH
Q 044022           87 RPIVLRNFKTQNILF---NEENVAKWFDFLLSISIPEGETH-----ITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGA  158 (241)
Q Consensus        87 ~~ivh~dl~~~nil~---~~~~~~~l~df~~~~~~~~~~~~-----~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~  158 (241)
                      .+++||||||+||++   +.++.+||+|||.+.........     .......+++.|+|||.+.+..++.++||||||+
T Consensus       124 ~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~  203 (296)
T 4hgt_A          124 KNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGY  203 (296)
T ss_dssp             TTEECSCCSGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHH
T ss_pred             CCeecCCCCHHHeeeeccCCCCeEEEecCccceeccCcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHH
Confidence            999999999999999   78899999999999876543221     1223457899999999999989999999999999


Q ss_pred             HHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCC
Q 044022          159 FLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT  238 (241)
Q Consensus       159 ~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt  238 (241)
                      ++|+|++|+.||........  ............. .     +.+....        ..+..+.+++.+||+.||++|||
T Consensus       204 il~~l~~g~~pf~~~~~~~~--~~~~~~~~~~~~~-~-----~~~~~~~--------~~~~~l~~li~~~l~~~p~~Rpt  267 (296)
T 4hgt_A          204 VLMYFNLGSLPWQGLKAATK--RQKYERISEKKMS-T-----PIEVLCK--------GYPSEFATYLNFCRSLRFDDKPD  267 (296)
T ss_dssp             HHHHHHHSSCTTSSCCCSSS--SSHHHHHHHHHHH-S-----CHHHHTT--------TSCHHHHHHHHHHHTSCTTCCCC
T ss_pred             HHHHHhcCCCCCcccchhhh--hhhhhhhhccccc-c-----hhhhhhc--------cCCHHHHHHHHHHHhcCCCCCCC
Confidence            99999999999965322211  1111111111100 0     0000001        11257899999999999999999


Q ss_pred             CCC
Q 044022          239 MVD  241 (241)
Q Consensus       239 ~~e  241 (241)
                      ++|
T Consensus       268 ~~~  270 (296)
T 4hgt_A          268 YSY  270 (296)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            753

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=100.00  E-value=1.6e-37  Score=250.46  Aligned_cols=203  Identities=14%  Similarity=0.197  Sum_probs=155.1

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeee--eCCcceEEEEecCCCCHHHhhcCC---Cc---hHHHHHHHHHHHhchhh
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCL--QTPIPILVFQSVEYGTLRDCIFGA---PL---PRLKIASDIVNSLAYLH   82 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~--~~~~~~lv~e~~~~~sL~~~l~~~---~~---~~~~~~~~i~~~l~~lh   82 (241)
                      .....+.+|++++++++||||+++++++.  ..+..++||||+.++ |.+++...   ..   ....++.+++.||.|||
T Consensus        48 ~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH  126 (305)
T 2wtk_C           48 NGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKMYMVMEYCVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLH  126 (305)
T ss_dssp             THHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CEEEEEECCSEE-HHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeEEEEehhccCC-HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHH
Confidence            34677999999999999999999999984  455789999999865 76665432   11   46789999999999999


Q ss_pred             cCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccC--CCcchhhHHHHHHH
Q 044022           83 FGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICV--LNEKSNVFSFGAFL  160 (241)
Q Consensus        83 ~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~--~~~~~Di~s~G~~~  160 (241)
                         +.+++|+||||+||+++.++.++|+|||.+................+++.|+|||++.+..  .+.++||||||+++
T Consensus       127 ---~~~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il  203 (305)
T 2wtk_C          127 ---SQGIVHKDIKPGNLLLTTGGTLKISALGVAEALHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTL  203 (305)
T ss_dssp             ---HTTEECSCCSGGGEEECTTCCEEECCCTTCEECCTTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHH
T ss_pred             ---HCCeeecCCCcccEEEcCCCcEEeeccccccccCccccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHH
Confidence               8999999999999999999999999999998765433333334556899999999987643  37799999999999


Q ss_pred             HHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          161 FELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       161 ~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                      |+|++|..||...         ...+...... ....      .+...        .+..+.+++.+||+.||++|||++
T Consensus       204 ~~l~~g~~p~~~~---------~~~~~~~~i~-~~~~------~~~~~--------~~~~l~~li~~~l~~dp~~Rps~~  259 (305)
T 2wtk_C          204 YNITTGLYPFEGD---------NIYKLFENIG-KGSY------AIPGD--------CGPPLSDLLKGMLEYEPAKRFSIR  259 (305)
T ss_dssp             HHHHHSSCSCCCS---------SHHHHHHHHH-HCCC------CCCSS--------SCHHHHHHHHHHTCSSTTTSCCHH
T ss_pred             HHHHhCCCCCCCc---------hHHHHHHHHh-cCCC------CCCCc--------cCHHHHHHHHHHccCChhhCCCHH
Confidence            9999999999641         1122222221 1111      11111        225788999999999999999975


Q ss_pred             C
Q 044022          241 D  241 (241)
Q Consensus       241 e  241 (241)
                      |
T Consensus       260 ~  260 (305)
T 2wtk_C          260 Q  260 (305)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.5e-38  Score=259.59  Aligned_cols=211  Identities=14%  Similarity=0.177  Sum_probs=157.1

Q ss_pred             HHHHHHHHHHHhcCCCcccc---------------eeeeeee-CCcceEEEEecCCCCHHHhhcCC---C---chHHHHH
Q 044022           14 GSCINNITYAAQMSHNHILK---------------RIGCCLQ-TPIPILVFQSVEYGTLRDCIFGA---P---LPRLKIA   71 (241)
Q Consensus        14 ~~~~~e~~~l~~l~h~~iv~---------------~~~~~~~-~~~~~lv~e~~~~~sL~~~l~~~---~---~~~~~~~   71 (241)
                      +.+.+|++++++++||||++               +++++.. .+..++||||+ +++|.+++...   .   ..+..++
T Consensus        87 ~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~  165 (352)
T 2jii_A           87 GRLFNEQNFFQRAAKPLQVNKWKKLYSTPLLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVA  165 (352)
T ss_dssp             STHHHHHHHHHHHCCHHHHHHHHHHTTCTTCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHH
T ss_pred             chHHHHHHHHHHhcccchhhhhhhhccCCccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHH
Confidence            56889999999999999998               5666665 67889999999 89999998754   1   1468899


Q ss_pred             HHHHHHhchhhcCCCCCceeccCCCCCeeecCCC--CeEEeeccCceecCCCCcc-----eeecccccCCCccCcccccc
Q 044022           72 SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEEN--VAKWFDFLLSISIPEGETH-----ITTDRVIGTRGYSAPEYISI  144 (241)
Q Consensus        72 ~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~--~~~l~df~~~~~~~~~~~~-----~~~~~~~~~~~~~aPE~~~~  144 (241)
                      .|++.||.|||   +.+++||||||+||+++.++  .++|+|||++.........     .......|++.|+|||++.+
T Consensus       166 ~qi~~~L~~LH---~~~ivH~Dikp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~  242 (352)
T 2jii_A          166 CRLLDALEFLH---ENEYVHGNVTAENIFVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKG  242 (352)
T ss_dssp             HHHHHHHHHHH---HTTCBCSCCCGGGEEEETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTT
T ss_pred             HHHHHHHHHHH---hCCccCCCCCHHHEEEcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHcc
Confidence            99999999999   89999999999999999998  9999999999765432211     11123468999999999998


Q ss_pred             cCCCcchhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHH
Q 044022          145 CVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQL  224 (241)
Q Consensus       145 ~~~~~~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  224 (241)
                      ..++.++||||||+++|+|++|+.||.......    .............  ...........       ...+..+.++
T Consensus       243 ~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~~-------~~~~~~l~~l  309 (352)
T 2jii_A          243 CGPSRRSDLQSLGYCMLKWLYGFLPWTNCLPNT----EDIMKQKQKFVDK--PGPFVGPCGHW-------IRPSETLQKY  309 (352)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCH----HHHHHHHHHHHHS--CCCEECTTSCE-------ECCCHHHHHH
T ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCcccCCcCH----HHHHHHHHhccCC--hhhhhhhcccc-------CCCcHHHHHH
Confidence            899999999999999999999999996532110    0111111111111  11111100000       0112678999


Q ss_pred             HHHhccCCCCCCCCCCC
Q 044022          225 TLECVNNSPEDRPTMVD  241 (241)
Q Consensus       225 ~~~cl~~~p~~Rpt~~e  241 (241)
                      +.+||+.||++|||++|
T Consensus       310 i~~~l~~dp~~Rps~~~  326 (352)
T 2jii_A          310 LKVVMALTYEEKPPYAM  326 (352)
T ss_dssp             HHHHHTCCTTCCCCHHH
T ss_pred             HHHHHhCChhhCCCHHH
Confidence            99999999999999753

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=100.00  E-value=2.4e-37  Score=248.41  Aligned_cols=209  Identities=16%  Similarity=0.193  Sum_probs=156.7

Q ss_pred             HHHHHHHHHHHHhcCCCcccceeeee-eeCCcceEEEEecCCCCHHHhhcCC--Cc---hHHHHHHHHHHHhchhhcCCC
Q 044022           13 YGSCINNITYAAQMSHNHILKRIGCC-LQTPIPILVFQSVEYGTLRDCIFGA--PL---PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~iv~~~~~~-~~~~~~~lv~e~~~~~sL~~~l~~~--~~---~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      .+++.+|+.++++++|++++..+..+ ...+..++||||+ +++|.+++...  ..   ....++.|++.||.|||   +
T Consensus        48 ~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~  123 (296)
T 3uzp_A           48 HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIH---S  123 (296)
T ss_dssp             CCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---H
T ss_pred             hhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEEec-CCCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH---h
Confidence            45689999999999998877666655 5566789999999 89999998632  22   46789999999999999   8


Q ss_pred             CCceeccCCCCCeee---cCCCCeEEeeccCceecCCCCcce-----eecccccCCCccCcccccccCCCcchhhHHHHH
Q 044022           87 RPIVLRNFKTQNILF---NEENVAKWFDFLLSISIPEGETHI-----TTDRVIGTRGYSAPEYISICVLNEKSNVFSFGA  158 (241)
Q Consensus        87 ~~ivh~dl~~~nil~---~~~~~~~l~df~~~~~~~~~~~~~-----~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~  158 (241)
                      ++++||||||+||++   +.++.+||+|||.+..........     ......|++.|+|||.+.+..++.++||||||+
T Consensus       124 ~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~  203 (296)
T 3uzp_A          124 KNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGY  203 (296)
T ss_dssp             TTEECSCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHH
T ss_pred             CCeeeCCCCHHHeEEecCCCCCeEEEeeCCCcccccccccccccccccccccccccccCChhhhcCCCCCcchhhHHHHH
Confidence            999999999999999   488999999999998765433211     123456899999999999989999999999999


Q ss_pred             HHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCC
Q 044022          159 FLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT  238 (241)
Q Consensus       159 ~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt  238 (241)
                      ++|+|++|+.||.......  ................      .+....        ..++.+.+++.+||+.||++|||
T Consensus       204 il~~l~~g~~pf~~~~~~~--~~~~~~~~~~~~~~~~------~~~~~~--------~~~~~l~~li~~~l~~dp~~Rps  267 (296)
T 3uzp_A          204 VLMYFNLGSLPWQGLKAAT--KRQKYERISEKKMSTP------IEVLCK--------GYPSEFATYLNFCRSLRFDDKPD  267 (296)
T ss_dssp             HHHHHHHSSCTTSSCCCSS--SSSHHHHHHHHHHHSC------HHHHTT--------TSCHHHHHHHHHHHTSCTTCCCC
T ss_pred             HHHHHHhCCCCCCCcCchh--hhhhhhhhcccccCCc------hHHHHh--------hCCHHHHHHHHHHHhcCcCcCCC
Confidence            9999999999996532211  1111111111111000      000111        12257899999999999999999


Q ss_pred             CCC
Q 044022          239 MVD  241 (241)
Q Consensus       239 ~~e  241 (241)
                      ++|
T Consensus       268 ~~~  270 (296)
T 3uzp_A          268 YSY  270 (296)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            753

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=100.00  E-value=1.4e-37  Score=250.05  Aligned_cols=204  Identities=23%  Similarity=0.330  Sum_probs=160.3

Q ss_pred             cHHHHHHHHHHHHhcC-CCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCC
Q 044022           12 TYGSCINNITYAAQMS-HNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~-h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ..+.+.+|++++++++ ||||+++++++...+..++||||+++++|.+++....    .....++.+++.||.|||   +
T Consensus        66 ~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH---~  142 (298)
T 1phk_A           66 LREATLKEVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALH---K  142 (298)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---H
T ss_pred             HHHHHHHHHHHHHHhcCCCCEeeeeeeeccCCeEEEEEeccCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            3567889999999995 9999999999999999999999999999999986532    256789999999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccc------ccCCCcchhhHHHHHHH
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYIS------ICVLNEKSNVFSFGAFL  160 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~------~~~~~~~~Di~s~G~~~  160 (241)
                      .+++|+||+|+||+++.++.++|+|||.+.........   ....+++.|+|||++.      ...++.++||||||+++
T Consensus       143 ~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l  219 (298)
T 1phk_A          143 LNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKL---REVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIM  219 (298)
T ss_dssp             TTEECSCCSGGGEEECTTCCEEECCCTTCEECCTTCCB---CCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHH
T ss_pred             CCcccCCCCcceEEEcCCCcEEEecccchhhcCCCccc---ccccCCccccCHHHhccccccccccCCcccccHhHHHHH
Confidence            99999999999999999999999999999876543321   2346889999999885      34678899999999999


Q ss_pred             HHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          161 FELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       161 ~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                      |+|++|..||....         ..+......... .. ...+..         ...+..+.+++.+||+.||++|||++
T Consensus       220 ~~l~~g~~p~~~~~---------~~~~~~~~~~~~-~~-~~~~~~---------~~~~~~l~~li~~~l~~dp~~Rps~~  279 (298)
T 1phk_A          220 YTLLAGSPPFWHRK---------QMLMLRMIMSGN-YQ-FGSPEW---------DDYSDTVKDLVSRFLVVQPQKRYTAE  279 (298)
T ss_dssp             HHHHHSSCSSCCSS---------HHHHHHHHHHTC-CC-CCTTTG---------GGSCHHHHHHHHHHCCSSGGGSCCHH
T ss_pred             HHHHHCCCCCcCcc---------HHHHHHHHhcCC-cc-cCcccc---------cccCHHHHHHHHHHccCCcccCCCHH
Confidence            99999999995421         111222221111 11 111110         12336789999999999999999975


Q ss_pred             C
Q 044022          241 D  241 (241)
Q Consensus       241 e  241 (241)
                      |
T Consensus       280 ~  280 (298)
T 1phk_A          280 E  280 (298)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=100.00  E-value=3.2e-38  Score=254.29  Aligned_cols=205  Identities=19%  Similarity=0.220  Sum_probs=155.7

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC--C---chHHHHHHHHHHHhchhhcCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA--P---LPRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~--~---~~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ...+++.+|++++++++||||+++++++...+..++||||+++++|.+++...  .   .....++.+++.||.|||   
T Consensus        58 ~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---  134 (302)
T 2j7t_A           58 EELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLH---  134 (302)
T ss_dssp             CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEECCTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEEeCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh---
Confidence            45778999999999999999999999999999999999999999999987542  1   246789999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccc-----ccCCCcchhhHHHHHHH
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYIS-----ICVLNEKSNVFSFGAFL  160 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~-----~~~~~~~~Di~s~G~~~  160 (241)
                      +.+++|+||||+||+++.++.++|+|||.+.......  .......+++.|+|||.+.     ...++.++||||||+++
T Consensus       135 ~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il  212 (302)
T 2j7t_A          135 SKRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTL--QKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITL  212 (302)
T ss_dssp             HTTCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHHH--HC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHH
T ss_pred             cCCcccCCCCHHHEEECCCCCEEEEECCCCccccccc--cccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHH
Confidence            8999999999999999999999999999864321110  0112346889999999983     56788999999999999


Q ss_pred             HHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          161 FELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       161 ~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                      |+|++|..||....         ..+......... .....   ...        ..+..+.+++.+||+.||++|||++
T Consensus       213 ~~l~~g~~p~~~~~---------~~~~~~~~~~~~-~~~~~---~~~--------~~~~~l~~li~~~l~~dp~~Rps~~  271 (302)
T 2j7t_A          213 IEMAQIEPPHHELN---------PMRVLLKIAKSD-PPTLL---TPS--------KWSVEFRDFLKIALDKNPETRPSAA  271 (302)
T ss_dssp             HHHHHSSCTTTTSC---------HHHHHHHHHHSC-CCCCS---SGG--------GSCHHHHHHHHHHSCSCTTTSCCHH
T ss_pred             HHHhcCCCCCccCC---------HHHHHHHHhccC-CcccC---Ccc--------ccCHHHHHHHHHHcccChhhCCCHH
Confidence            99999999996521         111111111111 10000   011        2235788999999999999999975


Q ss_pred             C
Q 044022          241 D  241 (241)
Q Consensus       241 e  241 (241)
                      |
T Consensus       272 ~  272 (302)
T 2j7t_A          272 Q  272 (302)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.6e-37  Score=260.67  Aligned_cols=203  Identities=19%  Similarity=0.254  Sum_probs=149.8

Q ss_pred             HHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHHHhchhhcCCCC
Q 044022           14 GSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        14 ~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ..+.+|+++++++ +|||||++++++......++||||+. |+|.+++....     .....++.||+.||.|||   +.
T Consensus        62 ~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~~~-g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~  137 (432)
T 3p23_A           62 SFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIELCA-ATLQEYVEQKDFAHLGLEPITLLQQTTSGLAHLH---SL  137 (432)
T ss_dssp             EECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEECCS-EEHHHHHHSSSCCCCSSCHHHHHHHHHHHHHHHH---HT
T ss_pred             HHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEECCC-CCHHHHHHhcCCCccchhHHHHHHHHHHHHHHHH---HC
Confidence            3467899999999 89999999999999999999999996 69999986553     256789999999999999   89


Q ss_pred             CceeccCCCCCeeecC-----CCCeEEeeccCceecCCCCc-ceeecccccCCCccCccccc---ccCCCcchhhHHHHH
Q 044022           88 PIVLRNFKTQNILFNE-----ENVAKWFDFLLSISIPEGET-HITTDRVIGTRGYSAPEYIS---ICVLNEKSNVFSFGA  158 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~-----~~~~~l~df~~~~~~~~~~~-~~~~~~~~~~~~~~aPE~~~---~~~~~~~~Di~s~G~  158 (241)
                      +|+||||||+|||++.     ...++|+|||++........ ........||+.|+|||++.   ...++.++|||||||
T Consensus       138 ~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~  217 (432)
T 3p23_A          138 NIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGC  217 (432)
T ss_dssp             TCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHH
T ss_pred             cCEeCCCCHHHEEEecCCCCCceeEEEecccceeeccCCCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHH
Confidence            9999999999999953     33678999999986654321 11223457899999999997   356778999999999


Q ss_pred             HHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCC
Q 044022          159 FLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRP  237 (241)
Q Consensus       159 ~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rp  237 (241)
                      ++|+|++ |..||.....          .............     ....      ....+..+.+|+.+||+.||++||
T Consensus       218 il~ellt~g~~pf~~~~~----------~~~~~~~~~~~~~-----~~~~------~~~~~~~~~~li~~~L~~dP~~Rp  276 (432)
T 3p23_A          218 VFYYVISEGSHPFGKSLQ----------RQANILLGACSLD-----CLHP------EKHEDVIARELIEKMIAMDPQKRP  276 (432)
T ss_dssp             HHHHHHTTSCBTTBSTTT----------HHHHHHTTCCCCT-----TSCT------TCHHHHHHHHHHHHHSCSSGGGSC
T ss_pred             HHHHHHcCCCCCcchhhH----------HHHHHHhccCCcc-----ccCc------cccccHHHHHHHHHHHhCCHhhCC
Confidence            9999999 9999854111          1111111111110     0000      013445688999999999999999


Q ss_pred             CCCC
Q 044022          238 TMVD  241 (241)
Q Consensus       238 t~~e  241 (241)
                      |++|
T Consensus       277 s~~e  280 (432)
T 3p23_A          277 SAKH  280 (432)
T ss_dssp             CHHH
T ss_pred             CHHH
Confidence            9753

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=100.00  E-value=3.3e-37  Score=255.56  Aligned_cols=163  Identities=20%  Similarity=0.266  Sum_probs=133.6

Q ss_pred             Ccccccccc-cccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcc------eEEEEecCCCCHHHhhcCCCc--hHHHHH
Q 044022            1 MKFYGHEYH-RHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIP------ILVFQSVEYGTLRDCIFGAPL--PRLKIA   71 (241)
Q Consensus         1 iK~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~------~lv~e~~~~~sL~~~l~~~~~--~~~~~~   71 (241)
                      ||++..... .....++.+|+.+++.++||||+++++++...+..      ++||||+. ++|.+.+...-.  .+..++
T Consensus        72 iK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~i~  150 (371)
T 4exu_A           72 IKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYDFYLVMPFMQ-TDLQKIMGMEFSEEKIQYLV  150 (371)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCCCCEEEEECCC-EEHHHHTTSCCCHHHHHHHH
T ss_pred             EEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccceeEEEEEcccc-ccHHHHhhcCCCHHHHHHHH
Confidence            355543322 23467788999999999999999999999876654      99999997 799888865422  567899


Q ss_pred             HHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc-cCCCcc
Q 044022           72 SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI-CVLNEK  150 (241)
Q Consensus        72 ~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-~~~~~~  150 (241)
                      .+++.||.|||   +.+++||||||+||+++.++.++|+|||.+.......     ....+|+.|+|||++.+ ..++.+
T Consensus       151 ~qi~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~~-----~~~~~t~~y~aPE~~~~~~~~~~~  222 (371)
T 4exu_A          151 YQMLKGLKYIH---SAGVVHRDLKPGNLAVNEDCELKILDFGLARHADAEM-----TGYVVTRWYRAPEVILSWMHYNQT  222 (371)
T ss_dssp             HHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECSTTCC-------------CTTCCCTTSCHHHHSCCSCCCTT
T ss_pred             HHHHHHHHHHH---HCCCcCCCcCHHHeEECCCCCEEEEecCcccccccCc-----CCcccCccccCHHHhcCCCCCCcH
Confidence            99999999999   8999999999999999999999999999997554321     33568999999999987 678999


Q ss_pred             hhhHHHHHHHHHHHhcCccccc
Q 044022          151 SNVFSFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       151 ~Di~s~G~~~~~~~~g~~p~~~  172 (241)
                      +||||||+++|+|++|+.||..
T Consensus       223 ~DiwslG~il~el~~g~~pf~~  244 (371)
T 4exu_A          223 VDIWSVGCIMAEMLTGKTLFKG  244 (371)
T ss_dssp             HHHHHHHHHHHHHHHSSCSCCC
T ss_pred             HhHHHHHHHHHHHHhCCCCCCC
Confidence            9999999999999999999964

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=100.00  E-value=9e-38  Score=254.31  Aligned_cols=203  Identities=21%  Similarity=0.262  Sum_probs=151.5

Q ss_pred             cHHHHHHHHHHHHhc-CCCcccceeeeeee------CCcceEEEEecCCCCHHHhhcCCC---c---hHHHHHHHHHHHh
Q 044022           12 TYGSCINNITYAAQM-SHNHILKRIGCCLQ------TPIPILVFQSVEYGTLRDCIFGAP---L---PRLKIASDIVNSL   78 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~------~~~~~lv~e~~~~~sL~~~l~~~~---~---~~~~~~~~i~~~l   78 (241)
                      ....+.+|+.+++++ +||||+++++++..      .+..++||||+++++|.+++....   .   ....++.+++.||
T Consensus        63 ~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l  142 (326)
T 2x7f_A           63 EEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGL  142 (326)
T ss_dssp             TTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--CCCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCccccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHH
Confidence            467889999999999 89999999999987      457899999999999999986531   1   3678899999999


Q ss_pred             chhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccc-----ccCCCcchhh
Q 044022           79 AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYIS-----ICVLNEKSNV  153 (241)
Q Consensus        79 ~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~-----~~~~~~~~Di  153 (241)
                      .|||   +.+++|+||||+||+++.++.++|+|||.+........  ......+++.|+|||.+.     ...++.++||
T Consensus       143 ~~lH---~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di  217 (326)
T 2x7f_A          143 SHLH---QHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVG--RRNTFIGTPYWMAPEVIACDENPDATYDFKSDL  217 (326)
T ss_dssp             HHHH---HTTCCCCCCSGGGEEECTTCCEEECCCTTTC---------------CCGGGCCHHHHC--------CCTTHHH
T ss_pred             HHHH---HCCccccCCcHHHEEEcCCCCEEEeeCcCceecCcCcc--ccccccCCccccChhhhccccccCcCCCccchH
Confidence            9999   89999999999999999999999999999876543211  123346899999999987     4568899999


Q ss_pred             HHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCC
Q 044022          154 FSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSP  233 (241)
Q Consensus       154 ~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p  233 (241)
                      ||||+++|+|++|..||....         ............ .....    ...        .+..+.+++.+||..||
T Consensus       218 ~slG~il~~l~~g~~p~~~~~---------~~~~~~~~~~~~-~~~~~----~~~--------~~~~l~~li~~~l~~dp  275 (326)
T 2x7f_A          218 WSLGITAIEMAEGAPPLCDMH---------PMRALFLIPRNP-APRLK----SKK--------WSKKFQSFIESCLVKNH  275 (326)
T ss_dssp             HHHHHHHHHHHHSSCTTTTSC---------HHHHHHHHHHSC-CCCCS----CSC--------SCHHHHHHHHHHCCSSG
T ss_pred             HHHHHHHHHHHhCCCCCCCCc---------HHHHHHHhhcCc-cccCC----ccc--------cCHHHHHHHHHHhccCh
Confidence            999999999999999995421         111111111111 11110    111        22578999999999999


Q ss_pred             CCCCCCCC
Q 044022          234 EDRPTMVD  241 (241)
Q Consensus       234 ~~Rpt~~e  241 (241)
                      ++|||++|
T Consensus       276 ~~Rps~~~  283 (326)
T 2x7f_A          276 SQRPATEQ  283 (326)
T ss_dssp             GGSCCHHH
T ss_pred             hhCCCHHH
Confidence            99999753

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=100.00  E-value=6e-38  Score=255.13  Aligned_cols=203  Identities=20%  Similarity=0.244  Sum_probs=154.4

Q ss_pred             HHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCCCC
Q 044022           13 YGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFPRP   88 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~~~   88 (241)
                      ...+.+|++++++++||||+++++++..+. .++||||+++++|.+++.....    ....++.+++.||.|||   +.+
T Consensus        59 ~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~  134 (322)
T 2ycf_A           59 ALNVETEIEILKKLNHPCIIKIKNFFDAED-YYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLH---ENG  134 (322)
T ss_dssp             --CHHHHHHHHHHCCCTTBCCEEEEEESSS-EEEEEECCTTEETHHHHSTTCCCCHHHHHHHHHHHHHHHHHHH---HTT
T ss_pred             hhhHHHHHHHHHhCCCCCCceEeeEEcCCc-eEEEEecCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCC
Confidence            456889999999999999999999986654 8999999999999998876532    46778999999999999   899


Q ss_pred             ceeccCCCCCeeecCCCC---eEEeeccCceecCCCCcceeecccccCCCccCccccc---ccCCCcchhhHHHHHHHHH
Q 044022           89 IVLRNFKTQNILFNEENV---AKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYIS---ICVLNEKSNVFSFGAFLFE  162 (241)
Q Consensus        89 ivh~dl~~~nil~~~~~~---~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~---~~~~~~~~Di~s~G~~~~~  162 (241)
                      ++||||||+||+++.++.   +||+|||.+........   .....|++.|+|||++.   ...++.++||||||+++|+
T Consensus       135 ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~  211 (322)
T 2ycf_A          135 IIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSL---MRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFI  211 (322)
T ss_dssp             EECCCCSGGGEEESSSSSSCCEEECCCTTCEECCCCHH---HHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHH
T ss_pred             eeccCCCHHHEEEecCCCCCeEEEccCccceecccccc---cccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHH
Confidence            999999999999987664   99999999987654321   12346899999999974   4568899999999999999


Q ss_pred             HHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          163 LLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       163 ~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      |++|..||......     .......    ..+....  .+...        ...+..+.+++.+||+.||++|||++|
T Consensus       212 l~~g~~pf~~~~~~-----~~~~~~~----~~~~~~~--~~~~~--------~~~~~~~~~li~~~l~~dP~~Rps~~~  271 (322)
T 2ycf_A          212 CLSGYPPFSEHRTQ-----VSLKDQI----TSGKYNF--IPEVW--------AEVSEKALDLVKKLLVVDPKARFTTEE  271 (322)
T ss_dssp             HHHSSCSSCSTTCS-----SCHHHHH----HHTCCCC--CHHHH--------TTSCHHHHHHHHHHSCSSTTTSCCHHH
T ss_pred             HHhCCCCCcccchH-----HHHHHHH----HhCcccc--Cchhh--------hhcCHHHHHHHHHHcccCHhhCCCHHH
Confidence            99999999652211     1111111    1111100  00000        122367899999999999999999753

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=100.00  E-value=7.7e-38  Score=250.53  Aligned_cols=214  Identities=22%  Similarity=0.290  Sum_probs=162.1

Q ss_pred             Cccccccc-ccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHH
Q 044022            1 MKFYGHEY-HRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIV   75 (241)
Q Consensus         1 iK~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~   75 (241)
                      ||++.... .....+.+.+|++++++++||||+++++++...+..++|+||+++++|.+++....    .....++.+++
T Consensus        52 lK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~  131 (287)
T 2wei_A           52 VKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVGELYTGGELFDEIIKRKRFSEHDAARIIKQVF  131 (287)
T ss_dssp             EEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred             EEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEEEEEccCCCCHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            35554333 23457789999999999999999999999999999999999999999988875431    25678999999


Q ss_pred             HHhchhhcCCCCCceeccCCCCCeeecCC---CCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchh
Q 044022           76 NSLAYLHFGFPRPIVLRNFKTQNILFNEE---NVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSN  152 (241)
Q Consensus        76 ~~l~~lh~~~~~~ivh~dl~~~nil~~~~---~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~D  152 (241)
                      .||.|||   +.+++|+||||+||+++.+   +.++|+|||.+.........   ....+++.|+|||.+.+ .++.++|
T Consensus       132 ~~l~~LH---~~~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~~~~~~~---~~~~~~~~y~aPE~~~~-~~~~~~D  204 (287)
T 2wei_A          132 SGITYMH---KHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKM---KDRIGTAYYIAPEVLRG-TYDEKCD  204 (287)
T ss_dssp             HHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEEECSTTGGGTBCCCSSC---SCHHHHHTTCCHHHHTT-CCCTHHH
T ss_pred             HHHHHHH---HCCeeccCCChhhEEEecCCCcccEEEeccCcceeecCCCcc---ccccCcccccChHHhcC-CCCCchh
Confidence            9999999   8999999999999999754   47999999998765443221   22357889999998875 4889999


Q ss_pred             hHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCC
Q 044022          153 VFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNS  232 (241)
Q Consensus       153 i~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~  232 (241)
                      |||||+++|+|++|..||....         ..+....... +... ...+. ..        ..+..+.+++.+||+.|
T Consensus       205 i~slG~~l~~l~~g~~p~~~~~---------~~~~~~~~~~-~~~~-~~~~~-~~--------~~~~~~~~li~~~l~~d  264 (287)
T 2wei_A          205 VWSAGVILYILLSGTPPFYGKN---------EYDILKRVET-GKYA-FDLPQ-WR--------TISDDAKDLIRKMLTFH  264 (287)
T ss_dssp             HHHHHHHHHHHHHSSCSSCCSS---------HHHHHHHHHH-CCCC-CCSGG-GT--------TSCHHHHHHHHHHTCSS
T ss_pred             hHhHHHHHHHHHhCCCCCCCCC---------HHHHHHHHHc-CCCC-CCchh-hh--------hcCHHHHHHHHHHcccC
Confidence            9999999999999999996521         1122222211 1110 00000 01        22357889999999999


Q ss_pred             CCCCCCCCC
Q 044022          233 PEDRPTMVD  241 (241)
Q Consensus       233 p~~Rpt~~e  241 (241)
                      |++|||++|
T Consensus       265 p~~Rps~~e  273 (287)
T 2wei_A          265 PSLRITATQ  273 (287)
T ss_dssp             GGGSCCHHH
T ss_pred             hhhCcCHHH
Confidence            999999853

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=100.00  E-value=7.4e-38  Score=258.43  Aligned_cols=153  Identities=19%  Similarity=0.219  Sum_probs=123.8

Q ss_pred             HHHHHHHHHHHHhcCCCcccceeeeeeeC-----CcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHHHhchhh
Q 044022           13 YGSCINNITYAAQMSHNHILKRIGCCLQT-----PIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVNSLAYLH   82 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-----~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~~l~~lh   82 (241)
                      .+.+.+|++++++++||||+++++++...     ...++||||+. |+|.+.+....     .....++.+++.||.|||
T Consensus        73 ~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH  151 (362)
T 3pg1_A           73 CKRVLREIRLLNHFHHPNILGLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQRIVISPQHIQYFMYHILLGLHVLH  151 (362)
T ss_dssp             HHHHHHHHHHHHHCCCTTBCCCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcCccceeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH
Confidence            37899999999999999999999998643     35799999997 68888876542     146789999999999999


Q ss_pred             cCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc-cCCCcchhhHHHHHHHH
Q 044022           83 FGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI-CVLNEKSNVFSFGAFLF  161 (241)
Q Consensus        83 ~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~~~  161 (241)
                         +.+++|+||||+||+++.++.++|+|||.+........   .....+++.|+|||++.+ ..++.++||||||+++|
T Consensus       152 ---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~  225 (362)
T 3pg1_A          152 ---EAGVVHRDLHPGNILLADNNDITICDFNLAREDTADAN---KTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMA  225 (362)
T ss_dssp             ---HTTCCCCCCCGGGEEECTTCCEEECCTTC------------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHH
T ss_pred             ---HCcCEecCCChHHEEEcCCCCEEEEecCcccccccccc---cceecccceecCcHHhcCCCCCCcHhHHHhHHHHHH
Confidence               89999999999999999999999999999975443322   133468889999999876 67899999999999999


Q ss_pred             HHHhcCccccc
Q 044022          162 ELLAGRIHIWD  172 (241)
Q Consensus       162 ~~~~g~~p~~~  172 (241)
                      +|++|+.||..
T Consensus       226 ~l~~g~~pf~~  236 (362)
T 3pg1_A          226 EMFNRKALFRG  236 (362)
T ss_dssp             HHHHSSCSCCC
T ss_pred             HHHhCCCCCCC
Confidence            99999999965

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=100.00  E-value=1.5e-37  Score=262.59  Aligned_cols=207  Identities=20%  Similarity=0.347  Sum_probs=152.8

Q ss_pred             cHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc-----------hHHHHHHHHHHHhc
Q 044022           12 TYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL-----------PRLKIASDIVNSLA   79 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-----------~~~~~~~~i~~~l~   79 (241)
                      ..+.+.+|+++++++ +||||+++++++...+..++||||+. |+|.+++.....           ..+.++.||+.||.
T Consensus        51 ~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~  129 (434)
T 2rio_A           51 FCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCN-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVA  129 (434)
T ss_dssp             GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCS-EEHHHHHHTC------------CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecCC-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHH
Confidence            345678999999987 89999999999999999999999996 699999976532           23579999999999


Q ss_pred             hhhcCCCCCceeccCCCCCeeecCC-------------CCeEEeeccCceecCCCCcce--eecccccCCCccCcccccc
Q 044022           80 YLHFGFPRPIVLRNFKTQNILFNEE-------------NVAKWFDFLLSISIPEGETHI--TTDRVIGTRGYSAPEYISI  144 (241)
Q Consensus        80 ~lh~~~~~~ivh~dl~~~nil~~~~-------------~~~~l~df~~~~~~~~~~~~~--~~~~~~~~~~~~aPE~~~~  144 (241)
                      |||   +.+|+||||||+|||++.+             +.+||+|||++..........  ......||+.|+|||++.+
T Consensus       130 ~LH---~~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~  206 (434)
T 2rio_A          130 HLH---SLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEE  206 (434)
T ss_dssp             HHH---HTTEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEECCCTTCEECCC--------------CCTTSCHHHHSC
T ss_pred             HHH---HCCccccCCChHhEEEecCcccccccccCCCceEEEEcccccceecCCCCccceeeecCCCCCCCccCHHHhcc
Confidence            999   8999999999999999754             489999999998765432211  1234578999999999975


Q ss_pred             -------cCCCcchhhHHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHH
Q 044022          145 -------CVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQ  216 (241)
Q Consensus       145 -------~~~~~~~Di~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (241)
                             ..++.++||||||+++|+|++ |..||.....         .+  ....... . ...  ..    .......
T Consensus       207 ~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~---------~~--~~i~~~~-~-~~~--~~----~~~~~~~  267 (434)
T 2rio_A          207 SNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYS---------RE--SNIIRGI-F-SLD--EM----KCLHDRS  267 (434)
T ss_dssp             CCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTT---------HH--HHHHHTC-C-CCC--CC----TTCCCHH
T ss_pred             ccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchh---------hH--HHHhcCC-C-Ccc--cc----ccccccc
Confidence                   568899999999999999999 9999954211         00  1111111 0 000  00    0111134


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          217 QLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       217 ~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      .+..+.+++.+||+.||++|||+.|
T Consensus       268 ~~~~~~~li~~~L~~dP~~Rps~~e  292 (434)
T 2rio_A          268 LIAEATDLISQMIDHDPLKRPTAMK  292 (434)
T ss_dssp             HHHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             chHHHHHHHHHHhhCChhhCCCHHH
Confidence            5678999999999999999999853

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=100.00  E-value=1.6e-37  Score=248.77  Aligned_cols=213  Identities=21%  Similarity=0.257  Sum_probs=146.1

Q ss_pred             CcccccccccccHHH-HHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcC----C-Cc---hHHHHH
Q 044022            1 MKFYGHEYHRHTYGS-CINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFG----A-PL---PRLKIA   71 (241)
Q Consensus         1 iK~~~~~~~~~~~~~-~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~----~-~~---~~~~~~   71 (241)
                      ||++..........+ +.++...++.++||||+++++++..++..++||||++ |+|.+++..    . ..   ....++
T Consensus        37 vK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~i~  115 (290)
T 3fme_A           37 VKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICMELMD-TSLDKFYKQVIDKGQTIPEDILGKIA  115 (290)
T ss_dssp             EEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEEEECCS-EEHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred             EEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEEEehhc-cchHHHHHHHHhcCCCCCHHHHHHHH
Confidence            355544333333333 4445555788899999999999999999999999997 588777643    1 11   467899


Q ss_pred             HHHHHHhchhhcCCCC-CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccc----cccC
Q 044022           72 SDIVNSLAYLHFGFPR-PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYI----SICV  146 (241)
Q Consensus        72 ~~i~~~l~~lh~~~~~-~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~----~~~~  146 (241)
                      .|++.||.|||   +. +++||||||+||+++.++.++|+|||.+........   .....+++.|+|||.+    ....
T Consensus       116 ~qi~~~l~~lH---~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~  189 (290)
T 3fme_A          116 VSIVKALEHLH---SKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLVDDVA---KDIDAGCKPYMAPERINPELNQKG  189 (290)
T ss_dssp             HHHHHHHHHHH---HHSCCCCCCCSGGGCEECTTCCEEBCCC------------------CCCCCCSCHHHHSCCTTC--
T ss_pred             HHHHHHHHHHh---hcCCeecCCCCHHHEEECCCCCEEEeecCCccccccccc---ccccCCCccccChhhcChhhcCcC
Confidence            99999999999   77 999999999999999999999999999876544322   1234689999999996    4567


Q ss_pred             CCcchhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHH
Q 044022          147 LNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTL  226 (241)
Q Consensus       147 ~~~~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  226 (241)
                      ++.++||||||+++|+|++|+.||....       ... ........... .....    .        ..+..+.+++.
T Consensus       190 ~~~~~Di~slG~il~~l~~g~~p~~~~~-------~~~-~~~~~~~~~~~-~~~~~----~--------~~~~~~~~li~  248 (290)
T 3fme_A          190 YSVKSDIWSLGITMIELAILRFPYDSWG-------TPF-QQLKQVVEEPS-PQLPA----D--------KFSAEFVDFTS  248 (290)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTSCSSCCCS-------CHH-HHHHHHHHSCC-CCCCT----T--------TSCHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHCCCCccccC-------chH-HHHHHHhccCC-CCccc----c--------cCCHHHHHHHH
Confidence            8899999999999999999999995411       111 11111111111 11110    1        12257899999


Q ss_pred             HhccCCCCCCCCCCC
Q 044022          227 ECVNNSPEDRPTMVD  241 (241)
Q Consensus       227 ~cl~~~p~~Rpt~~e  241 (241)
                      +||+.||++|||++|
T Consensus       249 ~~l~~~p~~Rpt~~e  263 (290)
T 3fme_A          249 QCLKKNSKERPTYPE  263 (290)
T ss_dssp             HHTCSSGGGSCCHHH
T ss_pred             HHhhcChhhCcCHHH
Confidence            999999999999853

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=100.00  E-value=6.8e-38  Score=254.23  Aligned_cols=205  Identities=19%  Similarity=0.239  Sum_probs=154.3

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHHHhchhhcCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ...+.+.+|+.++++++||||+++++++...+..++|+||+++++|.+++....     .....++.+++.||.|||   
T Consensus        71 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~iv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH---  147 (319)
T 2y4i_B           71 DQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAIITSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLH---  147 (319)
T ss_dssp             CCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEEECBCCCSEEHHHHTTSSCCCCCSHHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEEEeecccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            345668899999999999999999999999999999999999999999997653     257889999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCC---cceeecccccCCCccCcccccc---------cCCCcchhh
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGE---THITTDRVIGTRGYSAPEYISI---------CVLNEKSNV  153 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~---~~~~~~~~~~~~~~~aPE~~~~---------~~~~~~~Di  153 (241)
                      +.+++|+||||+||+++ ++.++|+|||++.......   .........|++.|+|||.+..         ..++.++||
T Consensus       148 ~~~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di  226 (319)
T 2y4i_B          148 AKGILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDV  226 (319)
T ss_dssp             HTTCCCCCCCSTTEEEC---CCEECCCSCCC----------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHH
T ss_pred             hCCccccCCChhhEEEe-CCCEEEeecCCccccccccccccccccccCCCcccccChHHhhhccccccccccCCCchhhH
Confidence            89999999999999998 6899999999876543211   1111223458889999999874         347889999


Q ss_pred             HHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCC
Q 044022          154 FSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSP  233 (241)
Q Consensus       154 ~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p  233 (241)
                      ||||+++|+|++|..||....         ......... .+.......    ...+        ..+.+++.+||+.||
T Consensus       227 ~slG~il~el~~g~~p~~~~~---------~~~~~~~~~-~~~~~~~~~----~~~~--------~~l~~li~~~l~~~p  284 (319)
T 2y4i_B          227 FALGTIWYELHAREWPFKTQP---------AEAIIWQMG-TGMKPNLSQ----IGMG--------KEISDILLFCWAFEQ  284 (319)
T ss_dssp             HHHHHHHHHHHHSSCSSSSCC---------HHHHHHHHH-TTCCCCCCC----SSCC--------TTHHHHHHHHHCSST
T ss_pred             HHHHHHHHHHHhCCCCCCCCC---------HHHHHHHhc-cCCCCCCCc----CCCC--------HHHHHHHHHHhcCCh
Confidence            999999999999999996421         111222211 111111111    1111        458899999999999


Q ss_pred             CCCCCCCC
Q 044022          234 EDRPTMVD  241 (241)
Q Consensus       234 ~~Rpt~~e  241 (241)
                      ++|||++|
T Consensus       285 ~~Rpt~~~  292 (319)
T 2y4i_B          285 EERPTFTK  292 (319)
T ss_dssp             TTSCCHHH
T ss_pred             hhCcCHHH
Confidence            99999753

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=100.00  E-value=1.3e-37  Score=262.54  Aligned_cols=152  Identities=22%  Similarity=0.215  Sum_probs=132.5

Q ss_pred             cHHHHHHHHHHHHhc------CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC---c---hHHHHHHHHHHHhc
Q 044022           12 TYGSCINNITYAAQM------SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP---L---PRLKIASDIVNSLA   79 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l------~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~---~---~~~~~~~~i~~~l~   79 (241)
                      ...++.+|+++++.+      .|+||+++++++...+..++||||+. ++|.+++....   .   .+..++.||+.||.
T Consensus       136 ~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~  214 (429)
T 3kvw_A          136 FHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHICMTFELLS-MNLYELIKKNKFQGFSLPLVRKFAHSILQCLD  214 (429)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEEEEEECCCC-CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeEEEEEeccC-CCHHHHHHhccCCCCCHHHHHHHHHHHHHHHH
Confidence            356778899999888      56799999999999999999999996 69999886542   1   46789999999999


Q ss_pred             hhhcCCCCCceeccCCCCCeeecCCCC--eEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHH
Q 044022           80 YLHFGFPRPIVLRNFKTQNILFNEENV--AKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFG  157 (241)
Q Consensus        80 ~lh~~~~~~ivh~dl~~~nil~~~~~~--~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G  157 (241)
                      |||   +.+|+||||||+|||++.++.  +||+|||++.......     ....+|+.|+|||++.+..++.++||||||
T Consensus       215 ~LH---~~~ivHrDlKp~NILl~~~~~~~vkL~DFG~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG  286 (429)
T 3kvw_A          215 ALH---KNRIIHCDLKPENILLKQQGRSGIKVIDFGSSCYEHQRV-----YTYIQSRFYRAPEVILGARYGMPIDMWSLG  286 (429)
T ss_dssp             HHH---HHTEECSCCSGGGEEESSTTSCCEEECCCTTCEETTCCC-----CSSCSCGGGCCHHHHHTBCCCTHHHHHHHH
T ss_pred             HHH---HCCeecCCCCHHHeEEccCCCcceEEeecccceecCCcc-----cccCCCCCccChHHHhCCCCCchHHHHhHH
Confidence            999   899999999999999999887  9999999997654332     334689999999999999999999999999


Q ss_pred             HHHHHHHhcCccccc
Q 044022          158 AFLFELLAGRIHIWD  172 (241)
Q Consensus       158 ~~~~~~~~g~~p~~~  172 (241)
                      |++|+|++|..||..
T Consensus       287 ~il~elltG~~pf~~  301 (429)
T 3kvw_A          287 CILAELLTGYPLLPG  301 (429)
T ss_dssp             HHHHHHHHSSCSSCC
T ss_pred             HHHHHHHhCCCCCCC
Confidence            999999999999954

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=100.00  E-value=2.9e-37  Score=250.09  Aligned_cols=214  Identities=18%  Similarity=0.295  Sum_probs=154.9

Q ss_pred             cccccc-cccccHHHHHHHHHHHHhcC--CCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHH
Q 044022            2 KFYGHE-YHRHTYGSCINNITYAAQMS--HNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDI   74 (241)
Q Consensus         2 K~~~~~-~~~~~~~~~~~e~~~l~~l~--h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i   74 (241)
                      |++..+ ......+.+.+|++++++++  |+||+++++++...+..++||| +.+++|.+++.....    .+..++.++
T Consensus        58 K~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~e-~~~~~L~~~l~~~~~~~~~~~~~i~~qi  136 (313)
T 3cek_A           58 KYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVME-CGNIDLNSWLKKKKSIDPWERKSYWKNM  136 (313)
T ss_dssp             EEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEEEEEC-CCSEEHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred             EEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEEEEEEe-cCCCcHHHHHHhcCCCCHHHHHHHHHHH
Confidence            444432 23345678999999999997  5999999999999999999999 557899999865432    567899999


Q ss_pred             HHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc----------
Q 044022           75 VNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI----------  144 (241)
Q Consensus        75 ~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~----------  144 (241)
                      +.||.|||   +.+++|+||||+||+++. +.+||+|||.+................|++.|+|||.+.+          
T Consensus       137 ~~aL~~LH---~~~ivH~dlkp~NIl~~~-~~~kL~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~  212 (313)
T 3cek_A          137 LEAVHTIH---QHGIVHSDLKPANFLIVD-GMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKS  212 (313)
T ss_dssp             HHHHHHHH---HTTCCCCCCCGGGEEEET-TEEEECCCSSSCC--------------CCGGGCCHHHHTTCC--------
T ss_pred             HHHHHHHH---HCCceecCCCcccEEEEC-CeEEEeeccccccccCccccccccCCCCCCCcCCHHHHhhcccccccccc
Confidence            99999999   899999999999999964 8999999999976654333222234568999999999875          


Q ss_pred             -cCCCcchhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHH
Q 044022          145 -CVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQ  223 (241)
Q Consensus       145 -~~~~~~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (241)
                       ..++.++||||||+++|+|++|..||......        ...............     .....        +..+.+
T Consensus       213 ~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~--------~~~~~~~~~~~~~~~-----~~~~~--------~~~l~~  271 (313)
T 3cek_A          213 KSKISPKSDVWSLGCILYYMTYGKTPFQQIINQ--------ISKLHAIIDPNHEIE-----FPDIP--------EKDLQD  271 (313)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSH--------HHHHHHHHCTTSCCC-----CCCCS--------CHHHHH
T ss_pred             cccCCchHHHHHHHHHHHHHHhCCCchhhHHHH--------HHHHHHHHhcccccC-----Ccccc--------hHHHHH
Confidence             46788999999999999999999999642111        111111111111111     11111        256889


Q ss_pred             HHHHhccCCCCCCCCCCC
Q 044022          224 LTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       224 l~~~cl~~~p~~Rpt~~e  241 (241)
                      ++.+||+.||++|||++|
T Consensus       272 li~~~l~~dp~~Rps~~e  289 (313)
T 3cek_A          272 VLKCCLKRDPKQRISIPE  289 (313)
T ss_dssp             HHHHHTCSSTTTSCCHHH
T ss_pred             HHHHHccCCcccCcCHHH
Confidence            999999999999999853

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=100.00  E-value=4.4e-37  Score=247.30  Aligned_cols=205  Identities=21%  Similarity=0.310  Sum_probs=148.7

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeee-------------CCcceEEEEecCCCCHHHhhcCCCc-----hHHHHHHH
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQ-------------TPIPILVFQSVEYGTLRDCIFGAPL-----PRLKIASD   73 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-------------~~~~~lv~e~~~~~sL~~~l~~~~~-----~~~~~~~~   73 (241)
                      ..+.+.+|++++++++||||+++++++..             .+..++||||+++++|.+++.....     ....++.+
T Consensus        45 ~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~q  124 (303)
T 1zy4_A           45 KLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQ  124 (303)
T ss_dssp             HHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC------CEEEEEEEEECCCSCBHHHHHHHSCGGGCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhcccccCCceEEEEecCCCCCHHHhhhccccccchHHHHHHHHH
Confidence            45778999999999999999999998865             3467999999999999999975432     45688999


Q ss_pred             HHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCc------------ceeecccccCCCccCccc
Q 044022           74 IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGET------------HITTDRVIGTRGYSAPEY  141 (241)
Q Consensus        74 i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~------------~~~~~~~~~~~~~~aPE~  141 (241)
                      ++.||.|||   +.+++|+||||+||+++.++.++|+|||.+........            ........+++.|+|||.
T Consensus       125 i~~~l~~LH---~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~  201 (303)
T 1zy4_A          125 ILEALSYIH---SQGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEV  201 (303)
T ss_dssp             HHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECCCCCCSCTTC-------------------------CTTSCHHH
T ss_pred             HHHHHHHHH---hCCeecccCCHHhEEEcCCCCEEEeeCcchhhcccccchhccccccccccccccccCCCcccccCccc
Confidence            999999999   89999999999999999999999999999876542210            111233468899999999


Q ss_pred             cccc-CCCcchhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHH
Q 044022          142 ISIC-VLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHA  220 (241)
Q Consensus       142 ~~~~-~~~~~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (241)
                      +.+. .++.++||||||+++|+|++   ||....        ...+...... ...  ....+....        ..+..
T Consensus       202 ~~~~~~~~~~~Di~slG~il~~l~~---p~~~~~--------~~~~~~~~~~-~~~--~~~~~~~~~--------~~~~~  259 (303)
T 1zy4_A          202 LDGTGHYNEKIDMYSLGIIFFEMIY---PFSTGM--------ERVNILKKLR-SVS--IEFPPDFDD--------NKMKV  259 (303)
T ss_dssp             HTSCSCCCTHHHHHHHHHHHHHHHS---CCSSHH--------HHHHHHHHHH-STT--CCCCTTCCT--------TTSHH
T ss_pred             ccCCCCCcchhhHHHHHHHHHHHHh---ccCCch--------hHHHHHHhcc-ccc--cccCccccc--------cchHH
Confidence            9764 68899999999999999998   443210        0111111111 110  011111111        22356


Q ss_pred             HHHHHHHhccCCCCCCCCCCC
Q 044022          221 SAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       221 ~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +.+++.+||+.||++|||++|
T Consensus       260 ~~~li~~~l~~dp~~Rps~~~  280 (303)
T 1zy4_A          260 EKKIIRLLIDHDPNKRPGART  280 (303)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHH
T ss_pred             HHHHHHHHHhcCcccCcCHHH
Confidence            889999999999999999753

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=100.00  E-value=1.3e-36  Score=250.34  Aligned_cols=163  Identities=20%  Similarity=0.259  Sum_probs=132.9

Q ss_pred             Ccccccccc-cccHHHHHHHHHHHHhcCCCcccceeeeeeeCCc------ceEEEEecCCCCHHHhhcCCC--chHHHHH
Q 044022            1 MKFYGHEYH-RHTYGSCINNITYAAQMSHNHILKRIGCCLQTPI------PILVFQSVEYGTLRDCIFGAP--LPRLKIA   71 (241)
Q Consensus         1 iK~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~------~~lv~e~~~~~sL~~~l~~~~--~~~~~~~   71 (241)
                      ||.+..... ....+++.+|+.++++++||||+++++++...+.      .++||||+. ++|.+++...-  .....++
T Consensus        54 iK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~i~  132 (353)
T 3coi_A           54 IKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYDFYLVMPFMQ-TDLQKIMGLKFSEEKIQYLV  132 (353)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCCCEEEEECCS-EEGGGTTTSCCCHHHHHHHH
T ss_pred             EEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccceeEEEEecccc-CCHHHHhcCCCCHHHHHHHH
Confidence            355443322 2345678999999999999999999999987653      499999997 69988876542  2567899


Q ss_pred             HHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc-cCCCcc
Q 044022           72 SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI-CVLNEK  150 (241)
Q Consensus        72 ~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-~~~~~~  150 (241)
                      .+++.||.|||   +.+++||||||+||+++.++.++|+|||.+.......     ....+++.|+|||++.+ ..++.+
T Consensus       133 ~qi~~al~~LH---~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~-----~~~~~t~~y~aPE~~~~~~~~~~~  204 (353)
T 3coi_A          133 YQMLKGLKYIH---SAGVVHRDLKPGNLAVNEDCELKILDFGLARHADAEM-----TGYVVTRWYRAPEVILSWMHYNQT  204 (353)
T ss_dssp             HHHHHHHHHHH---HTTCCCSSCCGGGEEECTTCCEEECSTTCTTC-------------CCSBCCSCHHHHSCCSCCCTT
T ss_pred             HHHHHHHHHHH---HCCcccCCCCHHHEeECCCCcEEEeecccccCCCCCc-----cccccCcCcCCHHHHhCcCCCCch
Confidence            99999999999   8999999999999999999999999999987543321     23467899999999877 678899


Q ss_pred             hhhHHHHHHHHHHHhcCccccc
Q 044022          151 SNVFSFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       151 ~Di~s~G~~~~~~~~g~~p~~~  172 (241)
                      +||||||+++|+|++|..||..
T Consensus       205 ~Di~slG~il~el~~g~~pf~~  226 (353)
T 3coi_A          205 VDIWSVGCIMAEMLTGKTLFKG  226 (353)
T ss_dssp             HHHHHHHHHHHHHHHSSCSSBS
T ss_pred             hhHHHHHHHHHHHHhCCCCCCC
Confidence            9999999999999999999965

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=100.00  E-value=6.9e-38  Score=254.05  Aligned_cols=207  Identities=20%  Similarity=0.218  Sum_probs=155.1

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeee----CCcceEEEEecCCCCHHHhhcC-----CC---chHHHHHHHHHHHh
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQ----TPIPILVFQSVEYGTLRDCIFG-----AP---LPRLKIASDIVNSL   78 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~----~~~~~lv~e~~~~~sL~~~l~~-----~~---~~~~~~~~~i~~~l   78 (241)
                      ...+.+.+|++++++++||||+++++++..    ....++|+||+++++|.+++..     ..   ..+..++.|++.||
T Consensus        68 ~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L  147 (317)
T 2buj_A           68 QDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGL  147 (317)
T ss_dssp             HHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEEEEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeEEEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence            456778999999999999999999999973    3478999999999999998864     11   14678999999999


Q ss_pred             chhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcc-------eeecccccCCCccCcccccccC---CC
Q 044022           79 AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH-------ITTDRVIGTRGYSAPEYISICV---LN  148 (241)
Q Consensus        79 ~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~-------~~~~~~~~~~~~~aPE~~~~~~---~~  148 (241)
                      .|||   +.+++|+||||+||+++.++.++|+|||.+.........       .......|++.|+|||.+.+..   ++
T Consensus       148 ~~LH---~~~ivH~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~  224 (317)
T 2buj_A          148 EAIH---AKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVID  224 (317)
T ss_dssp             HHHH---HTTEECCCCCGGGEEECTTSCEEECCCSSCEESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEEC
T ss_pred             HHHH---hCCcccCCCCHHHEEEcCCCCEEEEecCcchhcccccccccccccccccccccCCcccCCHhHhccCCCcCCC
Confidence            9999   899999999999999999999999999988754321110       0011234688999999987543   68


Q ss_pred             cchhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHh
Q 044022          149 EKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLEC  228 (241)
Q Consensus       149 ~~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c  228 (241)
                      .++||||||+++|+|++|+.||.......    ....   .... ..  ...+.   ..        ..+..+.+++.+|
T Consensus       225 ~~~Di~slG~il~el~~g~~p~~~~~~~~----~~~~---~~~~-~~--~~~~~---~~--------~~~~~l~~li~~~  283 (317)
T 2buj_A          225 ERTDVWSLGCVLYAMMFGEGPYDMVFQKG----DSVA---LAVQ-NQ--LSIPQ---SP--------RHSSALWQLLNSM  283 (317)
T ss_dssp             THHHHHHHHHHHHHHHHSSCTTHHHHHTT----SCHH---HHHH-CC----CCC---CT--------TSCHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHhCCCChhhhhccc----chhh---HHhh-cc--CCCCc---cc--------cCCHHHHHHHHHH
Confidence            89999999999999999999995421110    0000   1111 10  00111   01        1225789999999


Q ss_pred             ccCCCCCCCCCCC
Q 044022          229 VNNSPEDRPTMVD  241 (241)
Q Consensus       229 l~~~p~~Rpt~~e  241 (241)
                      |+.||++|||++|
T Consensus       284 l~~dp~~Rps~~~  296 (317)
T 2buj_A          284 MTVDPHQRPHIPL  296 (317)
T ss_dssp             TCSSGGGSCCHHH
T ss_pred             hhcChhhCCCHHH
Confidence            9999999999753

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=100.00  E-value=6.8e-38  Score=261.27  Aligned_cols=152  Identities=20%  Similarity=0.244  Sum_probs=128.8

Q ss_pred             cHHHHHHHHHHHHhcC--------CCcccceeeeee----eCCcceEEEEecCCCCHHHhhcCCC---c---hHHHHHHH
Q 044022           12 TYGSCINNITYAAQMS--------HNHILKRIGCCL----QTPIPILVFQSVEYGTLRDCIFGAP---L---PRLKIASD   73 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~--------h~~iv~~~~~~~----~~~~~~lv~e~~~~~sL~~~l~~~~---~---~~~~~~~~   73 (241)
                      ..+.+.+|++++++++        |+||+++++++.    .....++||||+. ++|.+.+....   .   ....++.|
T Consensus        76 ~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~i~~q  154 (397)
T 1wak_A           76 YTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHICMVFEVLG-HHLLKWIIKSNYQGLPLPCVKKIIQQ  154 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEETTEEEEEEEECCCC-CBHHHHHHHTTTSCCCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecCCCCceEEEEEeccC-ccHHHHHHhcccCCCCHHHHHHHHHH
Confidence            4567889999999995        788999999998    4557899999995 66666553321   1   46789999


Q ss_pred             HHHHhchhhcCCCC-CceeccCCCCCeeecCCC-----------------------------------------------
Q 044022           74 IVNSLAYLHFGFPR-PIVLRNFKTQNILFNEEN-----------------------------------------------  105 (241)
Q Consensus        74 i~~~l~~lh~~~~~-~ivh~dl~~~nil~~~~~-----------------------------------------------  105 (241)
                      |+.||.|||   ++ +|+||||||+|||++.++                                               
T Consensus       155 i~~aL~~lH---~~~givHrDikp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (397)
T 1wak_A          155 VLQGLDYLH---TKCRIIHTDIKPENILLSVNEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAE  231 (397)
T ss_dssp             HHHHHHHHH---HTTCEECCCCSGGGEEECCCHHHHHHHHHHHC---------------------CCTTSCCTTSGGGGG
T ss_pred             HHHHHHHHH---HhCCEecCCCCHHHeeEeccchhhhhhhhhhHHHhhcCCCCCCCCccccCCccccccccccccccccc
Confidence            999999999   77 999999999999998775                                               


Q ss_pred             --CeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcCccccc
Q 044022          106 --VAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       106 --~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~~p~~~  172 (241)
                        .++|+|||.+.......     ....||+.|+|||++.+..++.++||||||+++|+|++|+.||..
T Consensus       232 ~~~~kl~DfG~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~  295 (397)
T 1wak_A          232 KLKVKIADLGNACWVHKHF-----TEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEP  295 (397)
T ss_dssp             GCCEEECCGGGCEETTBCS-----CSCCSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred             ccceEeccccccccccccC-----ccCCCCCcccCChhhcCCCCCcHHHHHHHHHHHHHHhhCCCCCCC
Confidence              79999999998664332     334689999999999998999999999999999999999999965

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=100.00  E-value=5.9e-37  Score=248.50  Aligned_cols=158  Identities=18%  Similarity=0.270  Sum_probs=130.0

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeee--------------eCCcceEEEEecCCCCHHHhhcCCCc---hHHHHHHH
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCL--------------QTPIPILVFQSVEYGTLRDCIFGAPL---PRLKIASD   73 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~--------------~~~~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~   73 (241)
                      ...+++.+|++++++++||||+++++++.              ..+..++||||+. |+|.+++.....   ....++.+
T Consensus        50 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~q  128 (320)
T 2i6l_A           50 QSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVGSLTELNSVYIVQEYME-TDLANVLEQGPLLEEHARLFMYQ  128 (320)
T ss_dssp             HHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC----CCSCSEEEEEEECCS-EEHHHHHTTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccccccccCceeEEeeccC-CCHHHHhhcCCccHHHHHHHHHH
Confidence            45677899999999999999999999874              3457899999997 699999976543   46788999


Q ss_pred             HHHHhchhhcCCCCCceeccCCCCCeeec-CCCCeEEeeccCceecCCCCc-ceeecccccCCCccCcccccc-cCCCcc
Q 044022           74 IVNSLAYLHFGFPRPIVLRNFKTQNILFN-EENVAKWFDFLLSISIPEGET-HITTDRVIGTRGYSAPEYISI-CVLNEK  150 (241)
Q Consensus        74 i~~~l~~lh~~~~~~ivh~dl~~~nil~~-~~~~~~l~df~~~~~~~~~~~-~~~~~~~~~~~~~~aPE~~~~-~~~~~~  150 (241)
                      ++.||.|||   +.+++|+||||+||+++ .++.+||+|||.+........ ........++..|+|||.+.+ ..++.+
T Consensus       129 i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~  205 (320)
T 2i6l_A          129 LLRGLKYIH---SANVLHRDLKPANLFINTEDLVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKA  205 (320)
T ss_dssp             HHHHHHHHH---HTTCBCCCCSGGGEEEETTTTEEEECCCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHH
T ss_pred             HHHHHHHHH---hCCEecCCCCHHHEEEcCCCCeEEEccCccccccCCCcccccccccccccccccCcHHhcCcccCCch
Confidence            999999999   89999999999999997 567999999999876543211 111233457888999998865 678899


Q ss_pred             hhhHHHHHHHHHHHhcCccccc
Q 044022          151 SNVFSFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       151 ~Di~s~G~~~~~~~~g~~p~~~  172 (241)
                      +||||||+++|+|++|+.||..
T Consensus       206 ~Di~slG~il~el~~g~~pf~~  227 (320)
T 2i6l_A          206 IDMWAAGCIFAEMLTGKTLFAG  227 (320)
T ss_dssp             HHHHHHHHHHHHHHHSSCSSCC
T ss_pred             hhhHhHHHHHHHHHhCCCCCCC
Confidence            9999999999999999999965

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=100.00  E-value=1.2e-37  Score=253.73  Aligned_cols=216  Identities=19%  Similarity=0.217  Sum_probs=140.3

Q ss_pred             CcccccccccccHHHHHHHHH-HHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcC------CCc---hHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNIT-YAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFG------APL---PRLKI   70 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~-~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~------~~~---~~~~~   70 (241)
                      ||.+..........++.+|+. +++.++||||+++++++...+..++||||+. ++|.+++..      ...   ....+
T Consensus        52 iK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~i  130 (327)
T 3aln_A           52 VKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICMELMS-TSFDKFYKYVYSVLDDVIPEEILGKI  130 (327)
T ss_dssp             EEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEECCCS-EEHHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred             EEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEEeecC-CChHHHHHHHHhhhcccCcHHHHHHH
Confidence            355544433344556667766 6777899999999999999999999999997 588877652      222   46789


Q ss_pred             HHHHHHHhchhhcCCCC-CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccc----ccc
Q 044022           71 ASDIVNSLAYLHFGFPR-PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYI----SIC  145 (241)
Q Consensus        71 ~~~i~~~l~~lh~~~~~-~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~----~~~  145 (241)
                      +.+++.||.|||   +. +++||||||+||+++.++.+||+|||.+........   .....|++.|+|||++    .+.
T Consensus       131 ~~~i~~~l~~lH---~~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~  204 (327)
T 3aln_A          131 TLATVKALNHLK---ENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQLVDSIA---KTRDAGCRPYMAPERIDPSASRQ  204 (327)
T ss_dssp             HHHHHHHHHHHH---HHHSCCCSCCCGGGEEEETTTEEEECCCSSSCC--------------------------------
T ss_pred             HHHHHHHHHHHh---ccCCEeECCCCHHHEEEcCCCCEEEccCCCceecccccc---cccCCCCccccCceeeccccCcC
Confidence            999999999999   77 999999999999999999999999999876543321   1233688999999998    455


Q ss_pred             CCCcchhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHH
Q 044022          146 VLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLT  225 (241)
Q Consensus       146 ~~~~~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  225 (241)
                      .++.++||||||+++|+|++|..||.......        +   ...  ..... ..+.+.....    ...+..+.+++
T Consensus       205 ~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~--------~---~~~--~~~~~-~~~~~~~~~~----~~~~~~l~~li  266 (327)
T 3aln_A          205 GYDVRSDVWSLGITLYELATGRFPYPKWNSVF--------D---QLT--QVVKG-DPPQLSNSEE----REFSPSFINFV  266 (327)
T ss_dssp             -CCSHHHHHHHHHHHHHHHHSCCCSSCC------------------C--CCCCS-CCCCCCCCSS----CCCCHHHHHHH
T ss_pred             CCCchhhHHHHHHHHHHHHHCCCCCCCcchHH--------H---HHH--HHhcC-CCCCCCCccc----ccCCHHHHHHH
Confidence            68899999999999999999999996421110        0   000  00000 0011110000    01235789999


Q ss_pred             HHhccCCCCCCCCCCC
Q 044022          226 LECVNNSPEDRPTMVD  241 (241)
Q Consensus       226 ~~cl~~~p~~Rpt~~e  241 (241)
                      .+||+.||++|||++|
T Consensus       267 ~~~l~~dp~~Rps~~e  282 (327)
T 3aln_A          267 NLCLTKDESKRPKYKE  282 (327)
T ss_dssp             HHHTCSSGGGSCCHHH
T ss_pred             HHHhhCChhhCcCHHH
Confidence            9999999999999753

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=100.00  E-value=1.2e-36  Score=247.65  Aligned_cols=153  Identities=22%  Similarity=0.314  Sum_probs=130.7

Q ss_pred             HHHHHHHHHHHHhc---CCCcccceeeeee-----eCCcceEEEEecCCCCHHHhhcCCC---c---hHHHHHHHHHHHh
Q 044022           13 YGSCINNITYAAQM---SHNHILKRIGCCL-----QTPIPILVFQSVEYGTLRDCIFGAP---L---PRLKIASDIVNSL   78 (241)
Q Consensus        13 ~~~~~~e~~~l~~l---~h~~iv~~~~~~~-----~~~~~~lv~e~~~~~sL~~~l~~~~---~---~~~~~~~~i~~~l   78 (241)
                      ...+.+|+.+++.+   +||||+++++++.     .....++|+||+. |+|.+++....   .   ....++.+++.||
T Consensus        55 ~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l  133 (326)
T 1blx_A           55 PLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGL  133 (326)
T ss_dssp             BCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSSEEEEEEEEECCS-CBHHHHHHHSCTTCSCHHHHHHHHHHHHHHH
T ss_pred             CchhhHHHHHHHhhhccCCCCeEeeeeeeeecccCCCceEEEEEecCC-CCHHHHHHhcccCCCCHHHHHHHHHHHHHHH
Confidence            44677888888777   8999999999987     4557899999997 69999886532   1   4678999999999


Q ss_pred             chhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHH
Q 044022           79 AYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGA  158 (241)
Q Consensus        79 ~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~  158 (241)
                      .|||   +.+++|+||||+||+++.++.++|+|||.+.......   ......++..|+|||++.+..++.++||||||+
T Consensus       134 ~~lH---~~gi~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~  207 (326)
T 1blx_A          134 DFLH---SHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQM---ALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGC  207 (326)
T ss_dssp             HHHH---HTTCCCCCCCGGGEEECTTCCEEECSCCSCCCCCGGG---GGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHH
T ss_pred             HHHH---HCCceeccCCHHHeEEcCCCCEEEecCcccccccCCC---CccccccccceeCHHHHhcCCCCcchhHHHHHH
Confidence            9999   8999999999999999999999999999987554322   123346889999999999889999999999999


Q ss_pred             HHHHHHhcCccccc
Q 044022          159 FLFELLAGRIHIWD  172 (241)
Q Consensus       159 ~~~~~~~g~~p~~~  172 (241)
                      ++|+|++|+.||..
T Consensus       208 il~~l~~g~~pf~~  221 (326)
T 1blx_A          208 IFAEMFRRKPLFRG  221 (326)
T ss_dssp             HHHHHHHSSCSCCC
T ss_pred             HHHHHHcCCCCCCC
Confidence            99999999999965

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=100.00  E-value=9.9e-37  Score=248.96  Aligned_cols=152  Identities=22%  Similarity=0.232  Sum_probs=132.6

Q ss_pred             cHHHHHHHHHHHHhcCCCc------ccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC------chHHHHHHHHHHHhc
Q 044022           12 TYGSCINNITYAAQMSHNH------ILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP------LPRLKIASDIVNSLA   79 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~------iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~------~~~~~~~~~i~~~l~   79 (241)
                      ..+.+.+|+++++.++|++      ++++++++...+..++||||+ +++|.+++....      .....++.|++.||.
T Consensus        54 ~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~  132 (339)
T 1z57_A           54 YCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHICIVFELL-GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVN  132 (339)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCcEEEEEcCC-CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHH
Confidence            3567889999999997654      999999999999999999999 789999986543      146789999999999


Q ss_pred             hhhcCCCCCceeccCCCCCeeecC-------------------CCCeEEeeccCceecCCCCcceeecccccCCCccCcc
Q 044022           80 YLHFGFPRPIVLRNFKTQNILFNE-------------------ENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPE  140 (241)
Q Consensus        80 ~lh~~~~~~ivh~dl~~~nil~~~-------------------~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE  140 (241)
                      |||   +++++||||||+||+++.                   ++.++|+|||.+.......     ....||+.|+|||
T Consensus       133 ~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~-----~~~~gt~~y~aPE  204 (339)
T 1z57_A          133 FLH---SNKLTHTDLKPENILFVQSDYTEAYNPKIKRDERTLINPDIKVVDFGSATYDDEHH-----STLVSTRHYRAPE  204 (339)
T ss_dssp             HHH---HTTEECCCCCGGGEEESCCCEEEEEC----CEEEEESCCCEEECCCSSCEETTSCC-----CSSCSCGGGCCHH
T ss_pred             HHH---HCCCcCCCCCHHHEEEeccccccccCCccccccccccCCCceEeeCcccccCcccc-----ccccCCccccChH
Confidence            999   899999999999999987                   6689999999997654332     3346899999999


Q ss_pred             cccccCCCcchhhHHHHHHHHHHHhcCccccc
Q 044022          141 YISICVLNEKSNVFSFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       141 ~~~~~~~~~~~Di~s~G~~~~~~~~g~~p~~~  172 (241)
                      ++.+..++.++||||||+++|+|++|..||..
T Consensus       205 ~~~~~~~~~~~Di~slG~il~el~~g~~pf~~  236 (339)
T 1z57_A          205 VILALGWSQPCDVWSIGCILIEYYLGFTVFPT  236 (339)
T ss_dssp             HHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred             HhhCCCCCcchhhHHHHHHHHHHHhCCCCCCC
Confidence            99988999999999999999999999999954

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=100.00  E-value=4.7e-37  Score=256.48  Aligned_cols=213  Identities=20%  Similarity=0.202  Sum_probs=148.7

Q ss_pred             HHHHHHHHhcCCCcccceeeeeeeCCc------ceEEEEecCCCCHHHhhc-----CCCc---hHHHHHHHHHHHhchhh
Q 044022           17 INNITYAAQMSHNHILKRIGCCLQTPI------PILVFQSVEYGTLRDCIF-----GAPL---PRLKIASDIVNSLAYLH   82 (241)
Q Consensus        17 ~~e~~~l~~l~h~~iv~~~~~~~~~~~------~~lv~e~~~~~sL~~~l~-----~~~~---~~~~~~~~i~~~l~~lh   82 (241)
                      .+|+++++.++||||+++++++...+.      .++||||+++ ++...+.     ....   ....++.|++.||.|||
T Consensus        80 ~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH  158 (394)
T 4e7w_A           80 NRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNLVLEYVPE-TVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIH  158 (394)
T ss_dssp             CHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEEEEEECCSE-EHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEEEEeeccCc-cHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            379999999999999999999975443      7899999985 4443322     1111   46778999999999999


Q ss_pred             cCCCCCceeccCCCCCeeec-CCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc-CCCcchhhHHHHHHH
Q 044022           83 FGFPRPIVLRNFKTQNILFN-EENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-VLNEKSNVFSFGAFL  160 (241)
Q Consensus        83 ~~~~~~ivh~dl~~~nil~~-~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~~  160 (241)
                         +.+++||||||+|||++ .++.+||+|||++.........   ....+|+.|+|||++.+. .++.++||||||+++
T Consensus       159 ---~~~ivHrDlkp~Nill~~~~~~~kL~DFG~a~~~~~~~~~---~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il  232 (394)
T 4e7w_A          159 ---SIGICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIAGEPN---VSYICSRYYRAPELIFGATNYTTNIDIWSTGCVM  232 (394)
T ss_dssp             ---HTTEECSCCSGGGEEEETTTTEEEECCCTTCEECCTTCCC---CSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHH
T ss_pred             ---HCCccCCCCCHHHEEEcCCCCcEEEeeCCCcccccCCCCC---cccccCcCccCHHHHcCCCCCCcHHHHHHHHHHH
Confidence               89999999999999999 7899999999999876443221   234689999999998765 589999999999999


Q ss_pred             HHHHhcCcccccccccCCCcccchHHHHHHH---------hhhcccCCCCCCccccC-CCchhHHHHHHHHHHHHHHhcc
Q 044022          161 FELLAGRIHIWDLLKDTHDHGCFFNEYLKNY---------LEDKRFTGIPAPIIVQD-IPCIEKEQQLHASAQLTLECVN  230 (241)
Q Consensus       161 ~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~cl~  230 (241)
                      |+|++|+.||......     ....+.....         .....+....-+..... .........++.+.+|+.+||+
T Consensus       233 ~ell~g~~pf~~~~~~-----~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~  307 (394)
T 4e7w_A          233 AELMQGQPLFPGESGI-----DQLVEIIKVLGTPSREQIKTMNPNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLE  307 (394)
T ss_dssp             HHHHHSSCSSCCSSHH-----HHHHHHHHHHCCCCHHHHHHHCGGGSSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCC
T ss_pred             HHHHhCCCCCCCCCHH-----HHHHHHHHHhCCCCHHHHHhhChhhhhhccccccCCcHHHhccccCCHHHHHHHHHHhC
Confidence            9999999999652110     0111111100         00001111110110000 0000001133678999999999


Q ss_pred             CCCCCCCCCCC
Q 044022          231 NSPEDRPTMVD  241 (241)
Q Consensus       231 ~~p~~Rpt~~e  241 (241)
                      .||++|||+.|
T Consensus       308 ~dP~~R~t~~e  318 (394)
T 4e7w_A          308 YTPSARLTAIE  318 (394)
T ss_dssp             SSGGGSCCHHH
T ss_pred             CChhhCCCHHH
Confidence            99999999753

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=1.3e-36  Score=252.94  Aligned_cols=210  Identities=18%  Similarity=0.201  Sum_probs=150.7

Q ss_pred             HHHHHHHHHhcCCCcccceeeeeeeC--------------------------------------CcceEEEEecCCCCHH
Q 044022           16 CINNITYAAQMSHNHILKRIGCCLQT--------------------------------------PIPILVFQSVEYGTLR   57 (241)
Q Consensus        16 ~~~e~~~l~~l~h~~iv~~~~~~~~~--------------------------------------~~~~lv~e~~~~~sL~   57 (241)
                      ..+|+++++.++||||+++++++...                                      ...++||||++ ++|.
T Consensus        47 ~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~  125 (383)
T 3eb0_A           47 KNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLH  125 (383)
T ss_dssp             CCHHHHHHTTCCCTTBCCEEEEEEEC-------------------------------------CCEEEEEECCCS-EEHH
T ss_pred             HHHHHHHHHHcCCCCccchhheeeecCcccccccccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHH
Confidence            34799999999999999999998543                                      34789999997 5877


Q ss_pred             HhhcC----C-Cc---hHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeec-CCCCeEEeeccCceecCCCCcceeec
Q 044022           58 DCIFG----A-PL---PRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFN-EENVAKWFDFLLSISIPEGETHITTD  128 (241)
Q Consensus        58 ~~l~~----~-~~---~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~-~~~~~~l~df~~~~~~~~~~~~~~~~  128 (241)
                      +.+..    . ..   ....++.|++.||.|||   +.+++||||||+||+++ .++.+||+|||.+.........   .
T Consensus       126 ~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~---~  199 (383)
T 3eb0_A          126 KVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIH---SLGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEPS---V  199 (383)
T ss_dssp             HHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSCC---C
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCcCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCCC---c
Confidence            76642    2 11   46778999999999999   99999999999999998 6889999999999876443321   2


Q ss_pred             ccccCCCccCccccccc-CCCcchhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHh---------hhcccC
Q 044022          129 RVIGTRGYSAPEYISIC-VLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYL---------EDKRFT  198 (241)
Q Consensus       129 ~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~  198 (241)
                      ...+++.|+|||.+.+. .++.++||||+|+++|+|++|+.||......     ...........         ....+.
T Consensus       200 ~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~-----~~~~~i~~~~g~p~~~~~~~~~~~~~  274 (383)
T 3eb0_A          200 AYICSRFYRAPELMLGATEYTPSIDLWSIGCVFGELILGKPLFSGETSI-----DQLVRIIQIMGTPTKEQMIRMNPHYT  274 (383)
T ss_dssp             CCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-----HHHHHHHHHHCCCCHHHHHHHCTTC-
T ss_pred             CcccCCCccCHHHhcCCCCCCcchhhhhHHHHHHHHHhCCCCCCCCChH-----HHHHHHHHHhCCCCHHHHHHhCcccc
Confidence            34678999999998865 4899999999999999999999999652111     01111111000         000111


Q ss_pred             CC-----CCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          199 GI-----PAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       199 ~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ..     ....+....+    ...+..+.+|+.+||+.||++|||+.|
T Consensus       275 ~~~~~~~~~~~~~~~~~----~~~~~~~~~li~~~L~~dP~~R~t~~e  318 (383)
T 3eb0_A          275 EVRFPTLKAKDWRKILP----EGTPSLAIDLLEQILRYEPDLRINPYE  318 (383)
T ss_dssp             -CCCCCCCCCCHHHHSC----TTCCHHHHHHHHHHCCSSGGGSCCHHH
T ss_pred             cccCCccCcccHHhhCC----CCCCHHHHHHHHHHccCChhhCCCHHH
Confidence            11     1111111011    123367899999999999999999853

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.5e-37  Score=253.69  Aligned_cols=201  Identities=21%  Similarity=0.302  Sum_probs=137.7

Q ss_pred             ccHHHHHHHHHHHHhcC-CCcccceeeeeee--------CCcceEEEEecCCCCHHHhhcC----CCc---hHHHHHHHH
Q 044022           11 HTYGSCINNITYAAQMS-HNHILKRIGCCLQ--------TPIPILVFQSVEYGTLRDCIFG----APL---PRLKIASDI   74 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~-h~~iv~~~~~~~~--------~~~~~lv~e~~~~~sL~~~l~~----~~~---~~~~~~~~i   74 (241)
                      ...+.+.+|+.+++++. ||||+++++++..        ...+++|+||+. |+|.+++..    ...   .+..++.++
T Consensus        67 ~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi  145 (337)
T 3ll6_A           67 EKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQAEFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQT  145 (337)
T ss_dssp             HHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSSEEEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccCCChhhccccccccccccccCCceEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHH
Confidence            34667899999999996 9999999999953        335799999996 799888753    112   467899999


Q ss_pred             HHHhchhhcCCCCC--ceeccCCCCCeeecCCCCeEEeeccCceecCCCCcce----------eecccccCCCccCcccc
Q 044022           75 VNSLAYLHFGFPRP--IVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHI----------TTDRVIGTRGYSAPEYI  142 (241)
Q Consensus        75 ~~~l~~lh~~~~~~--ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~----------~~~~~~~~~~~~aPE~~  142 (241)
                      +.||.|||   +.+  ++|+||||+|||++.++.+||+|||.+..........          ......+++.|+|||++
T Consensus       146 ~~~l~~LH---~~~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~  222 (337)
T 3ll6_A          146 CRAVQHMH---RQKPPIIHRDLKVENLLLSNQGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEII  222 (337)
T ss_dssp             HHHHHHHH---TSSSCCBCCCCCGGGCEECTTSCEEBCCCTTCBCCSSCC------------------------------
T ss_pred             HHHHHHHH---hCCCCEEEccCCcccEEECCCCCEEEecCccceeccccCcccccccccccchhhccccCCCCcCChhhh
Confidence            99999999   888  9999999999999999999999999997654432111          11134588999999998


Q ss_pred             ---cccCCCcchhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHH
Q 044022          143 ---SICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLH  219 (241)
Q Consensus       143 ---~~~~~~~~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (241)
                         .+..++.++||||||+++|+|++|+.||.......             ... .... ...   ..        ..+.
T Consensus       223 ~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~-------------~~~-~~~~-~~~---~~--------~~~~  276 (337)
T 3ll6_A          223 DLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKLR-------------IVN-GKYS-IPP---HD--------TQYT  276 (337)
T ss_dssp             -CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC--------------------------CC-CCT---TC--------CSSG
T ss_pred             hccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHHH-------------hhc-Cccc-CCc---cc--------ccch
Confidence               55678899999999999999999999995421110             000 0000 000   01        1113


Q ss_pred             HHHHHHHHhccCCCCCCCCCCC
Q 044022          220 ASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       220 ~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      .+.+++.+||+.||++|||++|
T Consensus       277 ~~~~li~~~l~~~p~~Rps~~e  298 (337)
T 3ll6_A          277 VFHSLIRAMLQVNPEERLSIAE  298 (337)
T ss_dssp             GGHHHHHHHSCSSGGGSCCHHH
T ss_pred             HHHHHHHHHccCChhhCcCHHH
Confidence            4789999999999999999753

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=100.00  E-value=9e-36  Score=244.85  Aligned_cols=152  Identities=18%  Similarity=0.196  Sum_probs=130.7

Q ss_pred             cHHHHHHHHHHHHhcCCCc------ccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC---c---hHHHHHHHHHHHhc
Q 044022           12 TYGSCINNITYAAQMSHNH------ILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP---L---PRLKIASDIVNSLA   79 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~------iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~---~---~~~~~~~~i~~~l~   79 (241)
                      ..+.+.+|++++++++|++      ++.+.+++...+..++||||+ +++|.+++....   .   ....++.||+.||.
T Consensus        59 ~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~  137 (355)
T 2eu9_A           59 YREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFELL-GKNTFEFLKENNFQPYPLPHVRHMAYQLCHALR  137 (355)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCeEEEEEecc-CCChHHHHHhccCCCCCHHHHHHHHHHHHHHHH
Confidence            4567889999999997765      889999999999999999999 567777664332   1   46789999999999


Q ss_pred             hhhcCCCCCceeccCCCCCeee-------------------cCCCCeEEeeccCceecCCCCcceeecccccCCCccCcc
Q 044022           80 YLHFGFPRPIVLRNFKTQNILF-------------------NEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPE  140 (241)
Q Consensus        80 ~lh~~~~~~ivh~dl~~~nil~-------------------~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE  140 (241)
                      |||   +.+++||||||+|||+                   +.++.+||+|||.+.......     ....||+.|+|||
T Consensus       138 ~lH---~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~-----~~~~gt~~y~aPE  209 (355)
T 2eu9_A          138 FLH---ENQLTHTDLKPENILFVNSEFETLYNEHKSCEEKSVKNTSIRVADFGSATFDHEHH-----TTIVATRHYRPPE  209 (355)
T ss_dssp             HHH---TTTEECCCCCGGGEEESCCCEEEEECCC-CCCEEEESCCCEEECCCTTCEETTSCC-----CSSCSCGGGCCHH
T ss_pred             HHH---HCCcccCCCCHHHEEEecccccccccccccccccccCCCcEEEeecCccccccccc-----cCCcCCCcccCCe
Confidence            999   9999999999999999                   678899999999997654332     3346899999999


Q ss_pred             cccccCCCcchhhHHHHHHHHHHHhcCccccc
Q 044022          141 YISICVLNEKSNVFSFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       141 ~~~~~~~~~~~Di~s~G~~~~~~~~g~~p~~~  172 (241)
                      ++.+..++.++||||||+++|+|++|..||..
T Consensus       210 ~~~~~~~~~~~Di~slG~il~el~~g~~pf~~  241 (355)
T 2eu9_A          210 VILELGWAQPCDVWSIGCILFEYYRGFTLFQT  241 (355)
T ss_dssp             HHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred             eeecCCCCCccchHHHHHHHHHHHhCCCCCCC
Confidence            99988999999999999999999999999965

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=100.00  E-value=7.3e-37  Score=248.63  Aligned_cols=192  Identities=19%  Similarity=0.273  Sum_probs=154.6

Q ss_pred             HHHHHHHHHHHHhcC--CCcccceeeeeeeCCcceEEEEecCC-CCHHHhhcCCC----chHHHHHHHHHHHhchhhcCC
Q 044022           13 YGSCINNITYAAQMS--HNHILKRIGCCLQTPIPILVFQSVEY-GTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~--h~~iv~~~~~~~~~~~~~lv~e~~~~-~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ...+.+|+.++++++  |+||+++++++...+..++|+|++.+ ++|.+++....    .....++.|++.||.|||   
T Consensus        90 ~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~~L~~~l~~~~~l~~~~~~~i~~qi~~~L~~LH---  166 (320)
T 3a99_A           90 GTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCH---  166 (320)
T ss_dssp             CCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSEEEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHH---
T ss_pred             hhHHHHHHHHHHhhccCCCCceEEEEEEecCCcEEEEEEcCCCCccHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            356778999999996  59999999999999999999999975 89999886432    246789999999999999   


Q ss_pred             CCCceeccCCCCCeeec-CCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCC-CcchhhHHHHHHHHHH
Q 044022           86 PRPIVLRNFKTQNILFN-EENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVL-NEKSNVFSFGAFLFEL  163 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~-~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~-~~~~Di~s~G~~~~~~  163 (241)
                      +.+++||||||+||+++ .++.+||+|||.+........    ....|++.|+|||++.+..+ +.++||||||+++|+|
T Consensus       167 ~~~ivH~Dlkp~NIll~~~~~~~kL~Dfg~~~~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el  242 (320)
T 3a99_A          167 NCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVY----TDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDM  242 (320)
T ss_dssp             HTTEECCCCSGGGEEEETTTTEEEECCCTTCEECCSSCB----CCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHH
T ss_pred             HCCcEeCCCCHHHEEEeCCCCCEEEeeCccccccccccc----cCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHH
Confidence            89999999999999999 778999999999987654322    23468999999999987665 6789999999999999


Q ss_pred             HhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          164 LAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       164 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ++|+.||....               ...... .      ......        +..+.+++.+||+.||++|||++|
T Consensus       243 ~~g~~pf~~~~---------------~~~~~~-~------~~~~~~--------~~~~~~li~~~l~~dp~~Rps~~~  290 (320)
T 3a99_A          243 VCGDIPFEHDE---------------EIIRGQ-V------FFRQRV--------SSECQHLIRWCLALRPSDRPTFEE  290 (320)
T ss_dssp             HHSSCSCCSHH---------------HHHHCC-C------CCSSCC--------CHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             HHCCCCCCChh---------------hhhccc-c------cccccC--------CHHHHHHHHHHccCChhhCcCHHH
Confidence            99999995411               011110 0      011111        257889999999999999999853

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=100.00  E-value=1.6e-36  Score=248.23  Aligned_cols=199  Identities=20%  Similarity=0.272  Sum_probs=129.7

Q ss_pred             HHHHHhcCCCcccceeeeeee----CCcceEEEEecCCCCHHHhhcCCC---c---hHHHHHHHHHHHhchhhcCCCCCc
Q 044022           20 ITYAAQMSHNHILKRIGCCLQ----TPIPILVFQSVEYGTLRDCIFGAP---L---PRLKIASDIVNSLAYLHFGFPRPI   89 (241)
Q Consensus        20 ~~~l~~l~h~~iv~~~~~~~~----~~~~~lv~e~~~~~sL~~~l~~~~---~---~~~~~~~~i~~~l~~lh~~~~~~i   89 (241)
                      ...++.++||||+++++++..    ....++||||+++|+|.+++....   .   ....++.+++.||.|||   +.++
T Consensus        73 ~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH---~~~i  149 (336)
T 3fhr_A           73 DHHWQASGGPHIVCILDVYENMHHGKRCLLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLH---SHNI  149 (336)
T ss_dssp             HHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHH---HTTE
T ss_pred             HHHHHhcCCCChHHHHHHHhhccCCCceEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCe
Confidence            344566799999999999976    445899999999999999997652   2   46789999999999999   8999


Q ss_pred             eeccCCCCCeeecC---CCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhc
Q 044022           90 VLRNFKTQNILFNE---ENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        90 vh~dl~~~nil~~~---~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      +||||||+||+++.   ++.++|+|||.+........    ....+++.|+|||++.+..++.++||||||+++|+|++|
T Consensus       150 vH~dlkp~NIll~~~~~~~~~kl~Dfg~~~~~~~~~~----~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g  225 (336)
T 3fhr_A          150 AHRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQNAL----QTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCG  225 (336)
T ss_dssp             ECSCCSGGGEEESCSSTTCCEEECCCTTCEEC--------------------------CHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ecCCCCHHHEEEEecCCCceEEEeccccceecccccc----ccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHC
Confidence            99999999999976   45699999999976543322    234678999999999888899999999999999999999


Q ss_pred             CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          167 RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ..||..........     . ......... ...+.+..         ...+..+.+++.+||+.||++|||++|
T Consensus       226 ~~pf~~~~~~~~~~-----~-~~~~~~~~~-~~~~~~~~---------~~~~~~~~~li~~~L~~dP~~Rpt~~e  284 (336)
T 3fhr_A          226 FPPFYSNTGQAISP-----G-MKRRIRLGQ-YGFPNPEW---------SEVSEDAKQLIRLLLKTDPTERLTITQ  284 (336)
T ss_dssp             SCCC----------------------------CCCTTTS---------TTCCHHHHHHHHHHSCSSGGGSCCHHH
T ss_pred             CCCCCCccchhhhh-----h-HHHhhhccc-cccCchhh---------ccCCHHHHHHHHHHCCCChhHCcCHHH
Confidence            99996532211000     0 000000000 00011000         122367899999999999999999853

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=100.00  E-value=1.3e-35  Score=249.67  Aligned_cols=212  Identities=23%  Similarity=0.206  Sum_probs=149.2

Q ss_pred             HHHHHHHHHhcCCCcccceeeeeeeCC------cceEEEEecCCCCHHHhhcC-----CCc---hHHHHHHHHHHHhchh
Q 044022           16 CINNITYAAQMSHNHILKRIGCCLQTP------IPILVFQSVEYGTLRDCIFG-----APL---PRLKIASDIVNSLAYL   81 (241)
Q Consensus        16 ~~~e~~~l~~l~h~~iv~~~~~~~~~~------~~~lv~e~~~~~sL~~~l~~-----~~~---~~~~~~~~i~~~l~~l   81 (241)
                      +.+|++++++++||||++++++|...+      ..++||||++ ++|.+.+..     ...   ....++.||+.||.||
T Consensus        94 ~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~L  172 (420)
T 1j1b_A           94 KNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVP-ETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYI  172 (420)
T ss_dssp             CCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEEEEEECCC-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEEeehhccc-ccHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHH
Confidence            347999999999999999999986422      3679999997 466665432     111   4678899999999999


Q ss_pred             hcCCCCCceeccCCCCCeeecCC-CCeEEeeccCceecCCCCcceeecccccCCCccCccccccc-CCCcchhhHHHHHH
Q 044022           82 HFGFPRPIVLRNFKTQNILFNEE-NVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-VLNEKSNVFSFGAF  159 (241)
Q Consensus        82 h~~~~~~ivh~dl~~~nil~~~~-~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~  159 (241)
                      |   +.+|+||||||+|||++.+ +.+||+|||+++.......   .....+|+.|+|||++.+. .++.++|||||||+
T Consensus       173 H---~~~ivHrDlkp~NILl~~~~~~~kl~DFG~a~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~i  246 (420)
T 1j1b_A          173 H---SFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEP---NVSYICSRYYRAPELIFGATDYTSSIDVWSAGCV  246 (420)
T ss_dssp             H---TTTEECSCCSGGGEEEETTTTEEEECCCTTCEECCTTCC---CCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHH
T ss_pred             H---HCCccccCCChhhEEEeCCCCeEEeccchhhhhcccCCC---ceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHH
Confidence            9   9999999999999999965 5689999999987644322   1235689999999999765 78999999999999


Q ss_pred             HHHHHhcCcccccccccCCCcccchHHHHHHHh---------hhcccCCCCCCccccCCCchh---HHHHHHHHHHHHHH
Q 044022          160 LFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYL---------EDKRFTGIPAPIIVQDIPCIE---KEQQLHASAQLTLE  227 (241)
Q Consensus       160 ~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~  227 (241)
                      +|+|++|+.||.....     .....+..+...         ....+.....+.+...  .+.   ....+..+.+|+.+
T Consensus       247 l~ell~G~~pf~~~~~-----~~~l~~i~~~lg~p~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~~~~~~~~~~~Li~~  319 (420)
T 1j1b_A          247 LAELLLGQPIFPGDSG-----VDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAH--PWTKVFRPRTPPEAIALCSR  319 (420)
T ss_dssp             HHHHHHSSCSSCCSSH-----HHHHHHHHHHHCSCCHHHHHHHCSCCCCCCCCCCCCC--CHHHHSCTTSCHHHHHHHHH
T ss_pred             HHHHHhCCCCCCCCCH-----HHHHHHHHHHhCCCCHHHHHhhChhhhhhccCccCCC--CHHHhcCCCCCHHHHHHHHH
Confidence            9999999999965211     011111111100         0111111111111000  000   01123678999999


Q ss_pred             hccCCCCCCCCCCC
Q 044022          228 CVNNSPEDRPTMVD  241 (241)
Q Consensus       228 cl~~~p~~Rpt~~e  241 (241)
                      ||..||++|||+.|
T Consensus       320 ~L~~dP~~R~t~~e  333 (420)
T 1j1b_A          320 LLEYTPTARLTPLE  333 (420)
T ss_dssp             HSCSSGGGSCCHHH
T ss_pred             hccCChhHCCCHHH
Confidence            99999999999753

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=100.00  E-value=1.2e-36  Score=251.91  Aligned_cols=152  Identities=22%  Similarity=0.266  Sum_probs=128.9

Q ss_pred             cHHHHHHHHHHHHhcC-----------CCcccceeeeeeeCC----cceEEEEecCCCCHHHhhcCCC---c---hHHHH
Q 044022           12 TYGSCINNITYAAQMS-----------HNHILKRIGCCLQTP----IPILVFQSVEYGTLRDCIFGAP---L---PRLKI   70 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~-----------h~~iv~~~~~~~~~~----~~~lv~e~~~~~sL~~~l~~~~---~---~~~~~   70 (241)
                      ..+.+.+|++++++++           |+||+++++++...+    ..++|||++ +++|.+++....   .   ....+
T Consensus        58 ~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i  136 (373)
T 1q8y_A           58 YTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVL-GENLLALIKKYEHRGIPLIYVKQI  136 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEETTEEEEEEEECCC-CEEHHHHHHHTTTSCCCHHHHHHH
T ss_pred             chhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhhccCCCCceEEEEEecC-CCCHHHHHHHhhccCCcHHHHHHH
Confidence            3567889999999986           889999999998654    789999999 799999986531   1   46789


Q ss_pred             HHHHHHHhchhhcCCCC-CceeccCCCCCeeec------CCCCeEEeeccCceecCCCCcceeecccccCCCccCccccc
Q 044022           71 ASDIVNSLAYLHFGFPR-PIVLRNFKTQNILFN------EENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYIS  143 (241)
Q Consensus        71 ~~~i~~~l~~lh~~~~~-~ivh~dl~~~nil~~------~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~  143 (241)
                      +.||+.||.|||   ++ +++||||||+|||++      ..+.+||+|||++.......     ....+|+.|+|||++.
T Consensus       137 ~~qi~~aL~~lH---~~~~ivH~Dikp~NIll~~~~~~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~t~~y~aPE~~~  208 (373)
T 1q8y_A          137 SKQLLLGLDYMH---RRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHY-----TNSIQTREYRSPEVLL  208 (373)
T ss_dssp             HHHHHHHHHHHH---HTTCEECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETTBCC-----CSCCSCGGGCCHHHHH
T ss_pred             HHHHHHHHHHHH---hcCCEEecCCChHHeEEeccCCCcCcceEEEcccccccccCCCC-----CCCCCCccccCcHHHh
Confidence            999999999999   77 999999999999995      34479999999997664432     2346899999999999


Q ss_pred             ccCCCcchhhHHHHHHHHHHHhcCccccc
Q 044022          144 ICVLNEKSNVFSFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       144 ~~~~~~~~Di~s~G~~~~~~~~g~~p~~~  172 (241)
                      +..++.++||||||+++|+|++|..||..
T Consensus       209 ~~~~~~~~Di~slG~il~el~~g~~pf~~  237 (373)
T 1q8y_A          209 GAPWGCGADIWSTACLIFELITGDFLFEP  237 (373)
T ss_dssp             TCCCCTHHHHHHHHHHHHHHHHSSCCC--
T ss_pred             CCCCCchHhHHHHHHHHHHHHhCCCCCCC
Confidence            98999999999999999999999999965

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=100.00  E-value=1e-35  Score=245.36  Aligned_cols=156  Identities=21%  Similarity=0.233  Sum_probs=126.4

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCc-------ceEEEEecCCCCHHHhhc----CCCc----hHHHHHHHHHH
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPI-------PILVFQSVEYGTLRDCIF----GAPL----PRLKIASDIVN   76 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~-------~~lv~e~~~~~sL~~~l~----~~~~----~~~~~~~~i~~   76 (241)
                      ...++.++++.+..++||||+++++++...+.       .++||||+.+ +|...+.    ....    ....++.+++.
T Consensus        62 ~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~  140 (360)
T 3e3p_A           62 FRNRELQIMQDLAVLHHPNIVQLQSYFYTLGERDRRDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIR  140 (360)
T ss_dssp             CCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSSCTTCEEEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHhcCCCCcccHHHhhhccccccccceeEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHH
Confidence            34567788999999999999999999976443       7899999985 5544332    2211    45678999999


Q ss_pred             HhchhhcCCCCCceeccCCCCCeeecC-CCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc-CCCcchhhH
Q 044022           77 SLAYLHFGFPRPIVLRNFKTQNILFNE-ENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-VLNEKSNVF  154 (241)
Q Consensus        77 ~l~~lh~~~~~~ivh~dl~~~nil~~~-~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~  154 (241)
                      ||.|||.. +.+++||||||+|||++. ++.+||+|||++.........   ....||+.|+|||++.+. .++.++|||
T Consensus       141 al~~lH~~-~~~ivH~Dlkp~NIll~~~~~~~kl~Dfg~a~~~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~~Di~  216 (360)
T 3e3p_A          141 SIGCLHLP-SVNVCHRDIKPHNVLVNEADGTLKLCDFGSAKKLSPSEPN---VAYICSRYYRAPELIFGNQHYTTAVDIW  216 (360)
T ss_dssp             HHHHHTST-TTCCBCSCCCGGGEEEETTTTEEEECCCTTCBCCCTTSCC---CSTTSCGGGCCHHHHTTCSSCCTHHHHH
T ss_pred             HHHHHhCC-CCCeecCcCCHHHEEEeCCCCcEEEeeCCCceecCCCCCc---ccccCCcceeCHHHHcCCCCCCcHHHHH
Confidence            99999932 678999999999999997 899999999999866543321   234689999999998765 489999999


Q ss_pred             HHHHHHHHHHhcCccccc
Q 044022          155 SFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       155 s~G~~~~~~~~g~~p~~~  172 (241)
                      |||+++|+|++|+.||..
T Consensus       217 slG~il~ell~g~~pf~~  234 (360)
T 3e3p_A          217 SVGCIFAEMMLGEPIFRG  234 (360)
T ss_dssp             HHHHHHHHHHHSSCSSCC
T ss_pred             HHHHHHHHHHhCCCCcCC
Confidence            999999999999999965

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=100.00  E-value=6.6e-36  Score=254.86  Aligned_cols=208  Identities=17%  Similarity=0.185  Sum_probs=156.0

Q ss_pred             HHHHHHHHHHHHhcCC-CcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC--Cc---hHHHHHHHHHHHhchhhcCCC
Q 044022           13 YGSCINNITYAAQMSH-NHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA--PL---PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h-~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~--~~---~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ..++.+|+++++.|+| +++..+..++...+..++||||+ +++|.+++...  ..   .++.++.||+.||.|||   +
T Consensus        46 ~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme~~-g~sL~~ll~~~~~~l~~~~~~~i~~qi~~aL~yLH---~  121 (483)
T 3sv0_A           46 HPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMDLL-GPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVH---S  121 (483)
T ss_dssp             SCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---H
T ss_pred             cHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEECC-CCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            4468899999999987 55556666667788889999999 89999998632  22   57889999999999999   8


Q ss_pred             CCceeccCCCCCeee---cCCCCeEEeeccCceecCCCCcc-----eeecccccCCCccCcccccccCCCcchhhHHHHH
Q 044022           87 RPIVLRNFKTQNILF---NEENVAKWFDFLLSISIPEGETH-----ITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGA  158 (241)
Q Consensus        87 ~~ivh~dl~~~nil~---~~~~~~~l~df~~~~~~~~~~~~-----~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~  158 (241)
                      ++|+||||||+|||+   +.++.+||+|||++.........     .......||..|+|||++.+..++.++||||||+
T Consensus       122 ~gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGv  201 (483)
T 3sv0_A          122 KSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGY  201 (483)
T ss_dssp             TTEECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHH
T ss_pred             CCEeecccCcceEEEecCCCCCeEEEEeCCcceeccCCccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHH
Confidence            999999999999999   68899999999999876543321     1122457899999999999999999999999999


Q ss_pred             HHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCC
Q 044022          159 FLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT  238 (241)
Q Consensus       159 ~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt  238 (241)
                      ++|+|++|+.||.......      ..+......... .... ...+..        ..+..+.+++..||+.||++||+
T Consensus       202 il~elltG~~Pf~~~~~~~------~~~~~~~i~~~~-~~~~-~~~l~~--------~~p~~l~~li~~cl~~dP~~RPs  265 (483)
T 3sv0_A          202 VLMYFLRGSLPWQGLKAGT------KKQKYEKISEKK-VATS-IEALCR--------GYPTEFASYFHYCRSLRFDDKPD  265 (483)
T ss_dssp             HHHHHHHSSCTTSSCCCSS------HHHHHHHHHHHH-HHSC-HHHHHT--------TSCHHHHHHHHHHHTCCTTCCCC
T ss_pred             HHHHHHhCCCCCccccchh------HHHHHHHHhhcc-cccc-HHHHhc--------CCcHHHHHHHHHHhcCChhhCcC
Confidence            9999999999996532211      111111111100 0000 000011        12357899999999999999999


Q ss_pred             CC
Q 044022          239 MV  240 (241)
Q Consensus       239 ~~  240 (241)
                      ++
T Consensus       266 ~~  267 (483)
T 3sv0_A          266 YS  267 (483)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=100.00  E-value=1.5e-35  Score=246.53  Aligned_cols=154  Identities=20%  Similarity=0.218  Sum_probs=130.7

Q ss_pred             cHHHHHHHHHHHHhcC-CC-----cccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC------chHHHHHHHHHHHhc
Q 044022           12 TYGSCINNITYAAQMS-HN-----HILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP------LPRLKIASDIVNSLA   79 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~-h~-----~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~------~~~~~~~~~i~~~l~   79 (241)
                      ...++.+|+++++.++ |+     +|+++++++...+..++||||+. ++|.+++....      .....++.|++.||.
T Consensus        93 ~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~  171 (382)
T 2vx3_A           93 FLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHLCLVFEMLS-YNLYDLLRNTNFRGVSLNLTRKFAQQMCTALL  171 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETTEEEEEEECCC-CBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCCceEEEEecCC-CCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHH
Confidence            3566788999999885 55     48999999999999999999996 69999886542      146789999999999


Q ss_pred             hhhcCCCCCceeccCCCCCeeec--CCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHH
Q 044022           80 YLHFGFPRPIVLRNFKTQNILFN--EENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFG  157 (241)
Q Consensus        80 ~lh~~~~~~ivh~dl~~~nil~~--~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G  157 (241)
                      |||.. +.+|+||||||+|||++  .++.+||+|||++.......     ....+|+.|+|||++.+..++.++||||||
T Consensus       172 ~lH~~-~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~a~~~~~~~-----~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG  245 (382)
T 2vx3_A          172 FLATP-ELSIIHCDLKPENILLCNPKRSAIKIVDFGSSCQLGQRI-----YQYIQSRFYRSPEVLLGMPYDLAIDMWSLG  245 (382)
T ss_dssp             HHTST-TTCEECCCCSGGGEEESSTTSCCEEECCCTTCEETTCCC-----CSSCSCGGGCCHHHHTTCCCCTHHHHHHHH
T ss_pred             HhccC-CCCEEcCCCCcccEEEecCCCCcEEEEeccCceeccccc-----ccccCCccccChHHHcCCCCCcHHHHHHHH
Confidence            99931 36899999999999994  47889999999998764432     335689999999999998999999999999


Q ss_pred             HHHHHHHhcCccccc
Q 044022          158 AFLFELLAGRIHIWD  172 (241)
Q Consensus       158 ~~~~~~~~g~~p~~~  172 (241)
                      +++|+|++|+.||..
T Consensus       246 ~il~elltg~~pf~~  260 (382)
T 2vx3_A          246 CILVEMHTGEPLFSG  260 (382)
T ss_dssp             HHHHHHHHSSCSSCC
T ss_pred             HHHHHHHhCCCCCCC
Confidence            999999999999965

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=100.00  E-value=3.2e-36  Score=244.18  Aligned_cols=214  Identities=20%  Similarity=0.237  Sum_probs=146.7

Q ss_pred             CcccccccccccHHH-HHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcC--CC---chHHHHHHHH
Q 044022            1 MKFYGHEYHRHTYGS-CINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFG--AP---LPRLKIASDI   74 (241)
Q Consensus         1 iK~~~~~~~~~~~~~-~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~--~~---~~~~~~~~~i   74 (241)
                      ||++..........+ +.++..+++.++||||+++++++...+..++||||+ ++.+..+...  ..   .....++.++
T Consensus        55 vK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~e~~-~~~~~~l~~~~~~~~~~~~~~~~~~~i  133 (318)
T 2dyl_A           55 VKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAMELM-GTCAEKLKKRMQGPIPERILGKMTVAI  133 (318)
T ss_dssp             EEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCC-SEEHHHHHHHHTSCCCHHHHHHHHHHH
T ss_pred             EEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEEecc-CCcHHHHHHHhccCCCHHHHHHHHHHH
Confidence            355544333223333 444556788889999999999999999999999999 5666665542  11   2467899999


Q ss_pred             HHHhchhhcCCCC-CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccc-----ccCCC
Q 044022           75 VNSLAYLHFGFPR-PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYIS-----ICVLN  148 (241)
Q Consensus        75 ~~~l~~lh~~~~~-~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~-----~~~~~  148 (241)
                      +.||.|||   +. +++|+||||+||+++.++.++|+|||.+........   .....+++.|+|||.+.     ...++
T Consensus       134 ~~~l~~lH---~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~~  207 (318)
T 2dyl_A          134 VKALYYLK---EKHGVIHRDVKPSNILLDERGQIKLCDFGISGRLVDDKA---KDRSAGCAAYMAPERIDPPDPTKPDYD  207 (318)
T ss_dssp             HHHHHHHH---HHHCCCCCCCCGGGEEECTTSCEEECCCTTC-----------------CCTTCCHHHHC--------CC
T ss_pred             HHHHHHHH---hhCCEEeCCCCHHHEEECCCCCEEEEECCCchhccCCcc---ccccCCCccccChhhcccccccccCCc
Confidence            99999999   75 999999999999999999999999999876543321   12346889999999984     45678


Q ss_pred             cchhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHh
Q 044022          149 EKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLEC  228 (241)
Q Consensus       149 ~~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c  228 (241)
                      .++||||||+++|+|++|+.||.....        ..+......... ....+.   ..        ..+..+.+++.+|
T Consensus       208 ~~~Di~slG~il~~l~~g~~pf~~~~~--------~~~~~~~~~~~~-~~~~~~---~~--------~~~~~l~~li~~~  267 (318)
T 2dyl_A          208 IRADVWSLGISLVELATGQFPYKNCKT--------DFEVLTKVLQEE-PPLLPG---HM--------GFSGDFQSFVKDC  267 (318)
T ss_dssp             THHHHHHHHHHHHHHHHSSCTTTTCCS--------HHHHHHHHHHSC-CCCCCS---SS--------CCCHHHHHHHHHH
T ss_pred             cccchhhHHHHHHHHHhCCCCCCCCCc--------cHHHHHHHhccC-CCCCCc---cC--------CCCHHHHHHHHHH
Confidence            899999999999999999999954111        111222221111 111111   01        1125788999999


Q ss_pred             ccCCCCCCCCCCC
Q 044022          229 VNNSPEDRPTMVD  241 (241)
Q Consensus       229 l~~~p~~Rpt~~e  241 (241)
                      |+.||.+|||++|
T Consensus       268 l~~dp~~Rps~~~  280 (318)
T 2dyl_A          268 LTKDHRKRPKYNK  280 (318)
T ss_dssp             TCSCTTTSCCHHH
T ss_pred             ccCChhHCcCHHH
Confidence            9999999999753

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=100.00  E-value=2.9e-36  Score=267.58  Aligned_cols=199  Identities=20%  Similarity=0.245  Sum_probs=155.5

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCc-----ceEEEEecCCCCHHHhhcCCCc--hHHHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPI-----PILVFQSVEYGTLRDCIFGAPL--PRLKIASD   73 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~-----~~lv~e~~~~~sL~~~l~~~~~--~~~~~~~~   73 (241)
                      ||++...........+.+|++++++++||||+++++++...+.     .|+||||+++++|.+++...-.  .++.++.+
T Consensus       111 iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~~lv~E~~~g~~L~~~~~~~l~~~~~~~~~~q  190 (681)
T 2pzi_A          111 LKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVGYIVMEYVGGQSLKRSKGQKLPVAEAIAYLLE  190 (681)
T ss_dssp             EEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEEEEEEEECCCCEECC----CCCCHHHHHHHHHH
T ss_pred             EEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCceeEEEEEeCCCCcHHHHHhCCCCHHHHHHHHHH
Confidence            3555443334456678999999999999999999999987665     6999999999999988765322  57789999


Q ss_pred             HHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhh
Q 044022           74 IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNV  153 (241)
Q Consensus        74 i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di  153 (241)
                      |+.||.|||   +++|+||||||+|||++.+ .+||+|||++......      ....||+.|+|||++.+.. +.++||
T Consensus       191 i~~aL~~lH---~~giiHrDlkp~NIll~~~-~~kl~DFG~a~~~~~~------~~~~gt~~y~aPE~~~~~~-~~~sDi  259 (681)
T 2pzi_A          191 ILPALSYLH---SIGLVYNDLKPENIMLTEE-QLKLIDLGAVSRINSF------GYLYGTPGFQAPEIVRTGP-TVATDI  259 (681)
T ss_dssp             HHHHHHHHH---HTTEECCCCSGGGEEECSS-CEEECCCTTCEETTCC------SCCCCCTTTSCTTHHHHCS-CHHHHH
T ss_pred             HHHHHHHHH---HCCCeecccChHHeEEeCC-cEEEEecccchhcccC------CccCCCccccCHHHHcCCC-CCceeh
Confidence            999999999   8999999999999999985 8999999999876543      3346899999999987654 889999


Q ss_pred             HHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCC
Q 044022          154 FSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSP  233 (241)
Q Consensus       154 ~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p  233 (241)
                      ||||+++|+|++|..||......                      ....     .   ......+..+.+++.+||+.||
T Consensus       260 ~slG~~l~~l~~g~~~~~~~~~~----------------------~~~~-----~---~~~~~~~~~l~~li~~~l~~dP  309 (681)
T 2pzi_A          260 YTVGRTLAALTLDLPTRNGRYVD----------------------GLPE-----D---DPVLKTYDSYGRLLRRAIDPDP  309 (681)
T ss_dssp             HHHHHHHHHHHSCCCEETTEECS----------------------SCCT-----T---CHHHHHCHHHHHHHHHHTCSSG
T ss_pred             hhhHHHHHHHHhCCCCCcccccc----------------------cccc-----c---ccccccCHHHHHHHhhhccCCh
Confidence            99999999999999888541110                      0000     0   0111234678899999999999


Q ss_pred             CCCCCCC
Q 044022          234 EDRPTMV  240 (241)
Q Consensus       234 ~~Rpt~~  240 (241)
                      ++|||..
T Consensus       310 ~~R~~~~  316 (681)
T 2pzi_A          310 RQRFTTA  316 (681)
T ss_dssp             GGSCSSH
T ss_pred             hhCCCHH
Confidence            9999863

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=100.00  E-value=2.9e-36  Score=244.09  Aligned_cols=192  Identities=22%  Similarity=0.331  Sum_probs=150.0

Q ss_pred             HHHHHHHHHHHHhc----CCCcccceeeeeeeCCcceEEEEe-cCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhc
Q 044022           13 YGSCINNITYAAQM----SHNHILKRIGCCLQTPIPILVFQS-VEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHF   83 (241)
Q Consensus        13 ~~~~~~e~~~l~~l----~h~~iv~~~~~~~~~~~~~lv~e~-~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~   83 (241)
                      ...+.+|+.++.++    +||||+++++++...+..++|+|+ +.+++|.+++....    .....++.+++.||.||| 
T Consensus        78 ~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~~~~~~~~~v~e~~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH-  156 (312)
T 2iwi_A           78 SVTCPLEVALLWKVGAGGGHPGVIRLLDWFETQEGFMLVLERPLPAQDLFDYITEKGPLGEGPSRCFFGQVVAAIQHCH-  156 (312)
T ss_dssp             -CCCCHHHHHHHHHHSSCCCSSBCCEEEEC-----CEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHH-
T ss_pred             hHHHHHHHHHHHhhcccCCCCCeeeEEEEEecCCeEEEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH-
Confidence            44567899999999    899999999999999999999999 78899999986532    256789999999999999 


Q ss_pred             CCCCCceeccCCCCCeeec-CCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCC-cchhhHHHHHHHH
Q 044022           84 GFPRPIVLRNFKTQNILFN-EENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLN-EKSNVFSFGAFLF  161 (241)
Q Consensus        84 ~~~~~ivh~dl~~~nil~~-~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~-~~~Di~s~G~~~~  161 (241)
                        +.+++|+||||+||+++ .++.++|+|||.+........    ....++..|+|||++.+..+. .++||||||+++|
T Consensus       157 --~~~i~H~dlkp~Nil~~~~~~~~kl~dfg~~~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~  230 (312)
T 2iwi_A          157 --SRGVVHRDIKDENILIDLRRGCAKLIDFGSGALLHDEPY----TDFDGTRVYSPPEWISRHQYHALPATVWSLGILLY  230 (312)
T ss_dssp             --HHTEECCCCSGGGEEEETTTTEEEECCCSSCEECCSSCB----CCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHH
T ss_pred             --HCCeeecCCChhhEEEeCCCCeEEEEEcchhhhcccCcc----cccCCcccccCceeeecCCCCCccchHHHHHHHHH
Confidence              89999999999999999 889999999999987654322    334688999999998876664 5899999999999


Q ss_pred             HHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          162 ELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       162 ~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +|++|+.||....               .... ... .     +..        ..+..+.+++.+||+.||++|||++|
T Consensus       231 ~l~~g~~pf~~~~---------------~~~~-~~~-~-----~~~--------~~~~~~~~li~~~l~~~p~~Rps~~e  280 (312)
T 2iwi_A          231 DMVCGDIPFERDQ---------------EILE-AEL-H-----FPA--------HVSPDCCALIRRCLAPKPSSRPSLEE  280 (312)
T ss_dssp             HHHHSSCSCCSHH---------------HHHH-TCC-C-----CCT--------TSCHHHHHHHHHHTCSSTTTSCCHHH
T ss_pred             HHHHCCCCCCChH---------------HHhh-hcc-C-----Ccc--------cCCHHHHHHHHHHccCChhhCcCHHH
Confidence            9999999995411               0000 100 0     111        12256889999999999999999853

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=100.00  E-value=1.2e-34  Score=232.04  Aligned_cols=189  Identities=10%  Similarity=0.079  Sum_probs=143.1

Q ss_pred             Ccccccccc--cccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc--hHHHHHHHHHH
Q 044022            1 MKFYGHEYH--RHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL--PRLKIASDIVN   76 (241)
Q Consensus         1 iK~~~~~~~--~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~--~~~~~~~~i~~   76 (241)
                      ||++.....  ....+.+.+|++++.+++||||+++++++...+..|+||||+++++|.+++.....  ....++.|++.
T Consensus        61 vK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~i~~ql~~  140 (286)
T 3uqc_A           61 LTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVAEWIRGGSLQEVADTSPSPVGAIRAMQSLAA  140 (286)
T ss_dssp             EEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCCEEEHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             EEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEEEecCCCCHHHHHhcCCChHHHHHHHHHHHH
Confidence            456654433  23457899999999999999999999999999999999999999999999976543  46789999999


Q ss_pred             HhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHH
Q 044022           77 SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSF  156 (241)
Q Consensus        77 ~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~  156 (241)
                      ||.|||   +++++||||||+|||++.++.++|++++                      |++       .++.++|||||
T Consensus       141 aL~~lH---~~givH~Dikp~NIll~~~g~~kl~~~~----------------------~~~-------~~~~~~Di~sl  188 (286)
T 3uqc_A          141 AADAAH---RAGVALSIDHPSRVRVSIDGDVVLAYPA----------------------TMP-------DANPQDDIRGI  188 (286)
T ss_dssp             HHHHHH---HTTCCCCCCSGGGEEEETTSCEEECSCC----------------------CCT-------TCCHHHHHHHH
T ss_pred             HHHHHH---HCCCccCCCCcccEEEcCCCCEEEEecc----------------------ccC-------CCCchhHHHHH
Confidence            999999   8999999999999999999999988543                      222       26789999999


Q ss_pred             HHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCC--CccccCCCchhHHHHHHHHHHHHHHhccCCCC
Q 044022          157 GAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPA--PIIVQDIPCIEKEQQLHASAQLTLECVNNSPE  234 (241)
Q Consensus       157 G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~  234 (241)
                      |+++|+|++|+.||...........           ..........  .....        ..+..+.+++.+||+.||+
T Consensus       189 G~il~elltg~~Pf~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~--------~~~~~l~~li~~~l~~dP~  249 (286)
T 3uqc_A          189 GASLYALLVNRWPLPEAGVRSGLAP-----------AERDTAGQPIEPADIDR--------DIPFQISAVAARSVQGDGG  249 (286)
T ss_dssp             HHHHHHHHHSEECSCCCSBCCCSEE-----------CCBCTTSCBCCHHHHCT--------TSCHHHHHHHHHHHCTTSS
T ss_pred             HHHHHHHHHCCCCCCcCCcchhhHH-----------HHHHhccCCCChhhccc--------CCCHHHHHHHHHHcccCCc
Confidence            9999999999999965322110000           0000000000  00111        2236789999999999999


Q ss_pred             CCCCCCC
Q 044022          235 DRPTMVD  241 (241)
Q Consensus       235 ~Rpt~~e  241 (241)
                      +| |++|
T Consensus       250 ~R-s~~e  255 (286)
T 3uqc_A          250 IR-SAST  255 (286)
T ss_dssp             CC-CHHH
T ss_pred             cC-CHHH
Confidence            99 8753

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=100.00  E-value=4.2e-34  Score=230.19  Aligned_cols=186  Identities=17%  Similarity=0.237  Sum_probs=139.2

Q ss_pred             HHHHHHHHHHH-HhcCCCcccceeeeeee----CCcceEEEEecCCCCHHHhhcCCC---c---hHHHHHHHHHHHhchh
Q 044022           13 YGSCINNITYA-AQMSHNHILKRIGCCLQ----TPIPILVFQSVEYGTLRDCIFGAP---L---PRLKIASDIVNSLAYL   81 (241)
Q Consensus        13 ~~~~~~e~~~l-~~l~h~~iv~~~~~~~~----~~~~~lv~e~~~~~sL~~~l~~~~---~---~~~~~~~~i~~~l~~l   81 (241)
                      ...+.+|+.++ +.++||||+++++++..    .+..++||||+++++|.+++....   .   ....++.+++.||.||
T Consensus        54 ~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~l  133 (299)
T 3m2w_A           54 CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYL  133 (299)
T ss_dssp             SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceEEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHH
Confidence            45678899998 55599999999999987    667899999999999999986542   2   4678999999999999


Q ss_pred             hcCCCCCceeccCCCCCeeecC---CCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHH
Q 044022           82 HFGFPRPIVLRNFKTQNILFNE---ENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGA  158 (241)
Q Consensus        82 h~~~~~~ivh~dl~~~nil~~~---~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~  158 (241)
                      |   +.+++||||||+||+++.   ++.++|+|||++.....                        ..++.++||||||+
T Consensus       134 H---~~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~------------------------~~~~~~~DiwslG~  186 (299)
T 3m2w_A          134 H---SINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTG------------------------EKYDKSCDMWSLGV  186 (299)
T ss_dssp             H---HTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECTT------------------------CGGGGHHHHHHHHH
T ss_pred             H---hCCcccCCCCHHHEEEecCCCCCcEEEecccccccccc------------------------ccCCchhhHHHHHH
Confidence            9   899999999999999998   78999999998864321                        34678999999999


Q ss_pred             HHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCC
Q 044022          159 FLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT  238 (241)
Q Consensus       159 ~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt  238 (241)
                      ++|+|++|..||........              ...........  ....+.......+..+.+++.+||+.||++|||
T Consensus       187 il~el~tg~~pf~~~~~~~~--------------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps  250 (299)
T 3m2w_A          187 IMYILLCGYPPFYSNHGLAI--------------SPGMKTRIRMG--QYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMT  250 (299)
T ss_dssp             HHHHHHHSSCSCCC---------------------CCSCCSSCTT--CCSSCHHHHTTSCHHHHHHHHHHTCSSTTTSCC
T ss_pred             HHHHHHHCCCCCCCCcchhh--------------hHHHHHHHhhc--cccCCchhcccCCHHHHHHHHHHcccChhhCCC
Confidence            99999999999965211100              00000000000  001111111233467999999999999999999


Q ss_pred             CCC
Q 044022          239 MVD  241 (241)
Q Consensus       239 ~~e  241 (241)
                      ++|
T Consensus       251 ~~e  253 (299)
T 3m2w_A          251 ITE  253 (299)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            853

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=1.3e-33  Score=237.08  Aligned_cols=192  Identities=13%  Similarity=0.138  Sum_probs=139.5

Q ss_pred             ccHHHHHHHHHHHHhcCC-Ccccceeee---------------------eee-----CCcceEEEEecCCCCHHHhhc--
Q 044022           11 HTYGSCINNITYAAQMSH-NHILKRIGC---------------------CLQ-----TPIPILVFQSVEYGTLRDCIF--   61 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h-~~iv~~~~~---------------------~~~-----~~~~~lv~e~~~~~sL~~~l~--   61 (241)
                      ...+.+.+|+.+++.++| +|...+..+                     +..     ....+++|+.+ +++|.+++.  
T Consensus       120 ~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l  198 (413)
T 3dzo_A          120 NAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVL  198 (413)
T ss_dssp             -CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEEEECCC---------------CCSEEEEEECC-SEEHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhhcccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHh
Confidence            457789999999999987 332211111                     111     12456777766 589999884  


Q ss_pred             ----CCCc-----hHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeeccccc
Q 044022           62 ----GAPL-----PRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIG  132 (241)
Q Consensus        62 ----~~~~-----~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~  132 (241)
                          ....     .++.++.|++.||.|||   +++|+||||||+|||++.++.+||+|||++......     .....|
T Consensus       199 ~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~iiHrDiKp~NILl~~~~~~kL~DFG~a~~~~~~-----~~~~~g  270 (413)
T 3dzo_A          199 LSHSSTHKSLVHHARLQLTLQVIRLLASLH---HYGLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS-----AVSPIG  270 (413)
T ss_dssp             HHHTTTSHHHHHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCGGGCEETTEE-----ECCCCC
T ss_pred             hcccccCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCcccceEEEecCCeEEEEeccceeecCCc-----cccCCC
Confidence                1111     45678899999999999   899999999999999999999999999998764432     234467


Q ss_pred             CCCccCcccc----------cccCCCcchhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCC
Q 044022          133 TRGYSAPEYI----------SICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPA  202 (241)
Q Consensus       133 ~~~~~aPE~~----------~~~~~~~~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (241)
                       +.|+|||++          ....++.++||||||+++|+|++|+.||.........              ...+...  
T Consensus       271 -~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~elltg~~Pf~~~~~~~~~--------------~~~~~~~--  333 (413)
T 3dzo_A          271 -RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADLPNTDDAALGGS--------------EWIFRSC--  333 (413)
T ss_dssp             -TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHHHHHSSCCCCTTGGGSCS--------------GGGGSSC--
T ss_pred             -CceeCchhhhccccccccccCcCCCchhhHHHHHHHHHHHHHCCCCCCCcchhhhH--------------HHHHhhc--
Confidence             899999999          5556788999999999999999999999653211100              0000000  


Q ss_pred             CccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 044022          203 PIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMV  240 (241)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~  240 (241)
                          ...        ++.+.+|+.+||+.||++|||+.
T Consensus       334 ----~~~--------~~~~~~li~~~l~~dP~~Rpt~~  359 (413)
T 3dzo_A          334 ----KNI--------PQPVRALLEGFLRYPKEDRLLPL  359 (413)
T ss_dssp             ----CCC--------CHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             ----ccC--------CHHHHHHHHHHccCChhhCcCHH
Confidence                011        25789999999999999999964

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.98  E-value=8.6e-34  Score=231.93  Aligned_cols=195  Identities=12%  Similarity=0.049  Sum_probs=142.1

Q ss_pred             ccHHHHHHHHHHHHhcC--------------------------CCcccceeeeeee-------------CCcceEEEEec
Q 044022           11 HTYGSCINNITYAAQMS--------------------------HNHILKRIGCCLQ-------------TPIPILVFQSV   51 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~--------------------------h~~iv~~~~~~~~-------------~~~~~lv~e~~   51 (241)
                      ...+.+.+|+.+++.++                          ||||+++++++..             .+..++||||+
T Consensus        65 ~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~  144 (336)
T 2vuw_A           65 KTFEEILPEIIISKELSLLSGEVCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFE  144 (336)
T ss_dssp             BCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCEEEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEE
T ss_pred             hhHHHHHHHHHHHHHHHHhhccccccCCchhhhcceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEec
Confidence            44588999999999996                          4555555555543             67899999999


Q ss_pred             CCCCHHHhhcCCCc---hHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCC--------------------CeE
Q 044022           52 EYGTLRDCIFGAPL---PRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEEN--------------------VAK  108 (241)
Q Consensus        52 ~~~sL~~~l~~~~~---~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~--------------------~~~  108 (241)
                      ++|++.+.+.....   ....++.||+.||.|||.  +.+|+||||||+|||++.++                    .+|
T Consensus       145 ~~g~ll~~~~~~~~~~~~~~~i~~qi~~aL~~lH~--~~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vk  222 (336)
T 2vuw_A          145 FGGIDLEQMRTKLSSLATAKSILHQLTASLAVAEA--SLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVS  222 (336)
T ss_dssp             CCCEETGGGTTTCCCHHHHHHHHHHHHHHHHHHHH--HHCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEE
T ss_pred             CCCccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH--hCCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEE
Confidence            99976666644322   567899999999999993  37899999999999999887                    899


Q ss_pred             EeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHH-HHHHHhcCcccccccccCCCcccchHH-
Q 044022          109 WFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAF-LFELLAGRIHIWDLLKDTHDHGCFFNE-  186 (241)
Q Consensus       109 l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~-~~~~~~g~~p~~~~~~~~~~~~~~~~~-  186 (241)
                      |+|||+++.....       ...||+.|+|||++.+.. +.++||||++.+ .+++++|..||...         .+.. 
T Consensus       223 L~DFG~a~~~~~~-------~~~gt~~y~aPE~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~~---------~~~~~  285 (336)
T 2vuw_A          223 IIDYTLSRLERDG-------IVVFCDVSMDEDLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYSNV---------LWLHY  285 (336)
T ss_dssp             ECCCTTCBEEETT-------EEECCCCTTCSGGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHHHH---------HHHHH
T ss_pred             EeeccccEecCCC-------cEEEeecccChhhhcCCC-ccceehhhhhCCCCcccccccCCCcch---------hhhhH
Confidence            9999999865432       236899999999998766 899999998766 77888999998431         0101 


Q ss_pred             HHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCC
Q 044022          187 YLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNS  232 (241)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~  232 (241)
                      .............        ..........++.+.+|+.+||+.|
T Consensus       286 ~~~~~~~~~~~~~--------~~~~~~~~~~s~~~~dli~~~L~~d  323 (336)
T 2vuw_A          286 LTDKMLKQMTFKT--------KCNTPAMKQIKRKIQEFHRTMLNFS  323 (336)
T ss_dssp             HHHHHHHTCCCSS--------CCCSHHHHHHHHHHHHHHHHGGGSS
T ss_pred             HHHhhhhhhccCc--------ccchhhhhhcCHHHHHHHHHHhccC
Confidence            1111111111111        1111223467788999999999987

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.97  E-value=3.7e-33  Score=242.26  Aligned_cols=154  Identities=15%  Similarity=0.082  Sum_probs=117.6

Q ss_pred             ccHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-chHHHHHHHHHHHhchhhcCCCCC
Q 044022           11 HTYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-LPRLKIASDIVNSLAYLHFGFPRP   88 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-~~~~~~~~~i~~~l~~lh~~~~~~   88 (241)
                      ...++|.+|+++|+++ .|+||+++++++++++..||||||++|++|.+++.... .....++.||+.||.|+|   ++|
T Consensus       283 ~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLVMEyv~G~~L~d~i~~~~~l~~~~I~~QIl~AL~ylH---~~G  359 (569)
T 4azs_A          283 RNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVMEKLPGRLLSDMLAAGEEIDREKILGSLLRSLAALE---KQG  359 (569)
T ss_dssp             HHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEEEECCCSEEHHHHHHTTCCCCHHHHHHHHHHHHHHHH---HTT
T ss_pred             HHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEEEecCCCCcHHHHHHhCCCCCHHHHHHHHHHHHHHHH---HCC
Confidence            3456799999999999 79999999999999999999999999999999997764 456679999999999999   999


Q ss_pred             ceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcCc
Q 044022           89 IVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRI  168 (241)
Q Consensus        89 ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~~  168 (241)
                      ||||||||+|||++.++.+||+|||+++.......  .....+||+.|+|||++.+ ....++|+||+|++.+++.++..
T Consensus       360 IIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~~~--~~~t~vGTp~YmAPE~l~g-~~~~~~d~~s~g~~~~~l~~~~~  436 (569)
T 4azs_A          360 FWHDDVRPWNVMVDARQHARLIDFGSIVTTPQDCS--WPTNLVQSFFVFVNELFAE-NKSWNGFWRSAPVHPFNLPQPWS  436 (569)
T ss_dssp             CEESCCCGGGEEECTTSCEEECCCTTEESCC---C--CSHHHHHHHHHHHHHHC------------------CCCCTTHH
T ss_pred             ceeccCchHhEEECCCCCEEEeecccCeeCCCCCc--cccCceechhhccHHHhCC-CCCCcccccccccchhhhccccc
Confidence            99999999999999999999999999986654332  2244679999999999975 45678999999999888776655


Q ss_pred             cc
Q 044022          169 HI  170 (241)
Q Consensus       169 p~  170 (241)
                      ++
T Consensus       437 ~~  438 (569)
T 4azs_A          437 NW  438 (569)
T ss_dssp             HH
T ss_pred             hh
Confidence            44

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.92  E-value=2.6e-26  Score=198.35  Aligned_cols=149  Identities=15%  Similarity=0.085  Sum_probs=127.3

Q ss_pred             HHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCchHHHHHHHHHHHhchhhcCCCCCceec
Q 044022           13 YGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDIVNSLAYLHFGFPRPIVLR   92 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~i~~~l~~lh~~~~~~ivh~   92 (241)
                      .+++.+|++++++++||||+++..++...+..++||||+++++|.+++..    ...++.|++.||.|||   +++|+||
T Consensus       383 ~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lVmE~~~ggsL~~~l~~----~~~i~~qi~~aL~~LH---~~gIiHr  455 (540)
T 3en9_A          383 KSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIMMSYINGKLAKDVIED----NLDIAYKIGEIVGKLH---KNDVIHN  455 (540)
T ss_dssp             HHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEEEECCCSEEHHHHSTT----CTHHHHHHHHHHHHHH---HTTEECT
T ss_pred             HHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEEEECCCCCCHHHHHHH----HHHHHHHHHHHHHHHH---HCcCccC
Confidence            45689999999999999999777777788888999999999999999987    6789999999999999   8999999


Q ss_pred             cCCCCCeeecCCCCeEEeeccCceecCCCCcce-----eecccccCCCccCcccccc--cCCCcchhhHHHHHHHHHHHh
Q 044022           93 NFKTQNILFNEENVAKWFDFLLSISIPEGETHI-----TTDRVIGTRGYSAPEYISI--CVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        93 dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~-----~~~~~~~~~~~~aPE~~~~--~~~~~~~Di~s~G~~~~~~~~  165 (241)
                      ||||+|||++.  .+||+|||+++.........     ......||+.|+|||++..  ..|+..+|+||..+-..+-+.
T Consensus       456 DiKp~NILl~~--~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~  533 (540)
T 3en9_A          456 DLTTSNFIFDK--DLYIIDFGLGKISNLDEDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVE  533 (540)
T ss_dssp             TCCTTSEEESS--SEEECCCTTCEECCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred             CCCHHHEEECC--eEEEEECccCEECCCccccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            99999999998  99999999998775532211     1134578999999999986  567788899999988888877


Q ss_pred             cCccc
Q 044022          166 GRIHI  170 (241)
Q Consensus       166 g~~p~  170 (241)
                      ++.+|
T Consensus       534 ~r~rY  538 (540)
T 3en9_A          534 RRARY  538 (540)
T ss_dssp             TCSCC
T ss_pred             hcccc
Confidence            76655

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.80  E-value=4.3e-20  Score=147.13  Aligned_cols=105  Identities=15%  Similarity=0.090  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCchHHHHHHHHHHHhchhhcCCCCCceec
Q 044022           13 YGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDIVNSLAYLHFGFPRPIVLR   92 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~i~~~l~~lh~~~~~~ivh~   92 (241)
                      ..++.+|++++++++  | +++.+++.. +..++||||+++++|.+ +..  .....++.+++.||.|||   +.+++||
T Consensus       148 ~~~~~~E~~~l~~l~--~-~~v~~~~~~-~~~~lvmE~~~g~~L~~-l~~--~~~~~i~~qi~~~l~~lH---~~giiHr  217 (282)
T 1zar_A          148 IRSARNEFRALQKLQ--G-LAVPKVYAW-EGNAVLMELIDAKELYR-VRV--ENPDEVLDMILEEVAKFY---HRGIVHG  217 (282)
T ss_dssp             HHHHHHHHHHHHHTT--T-SSSCCEEEE-ETTEEEEECCCCEEGGG-CCC--SCHHHHHHHHHHHHHHHH---HTTEECS
T ss_pred             HHHHHHHHHHHHhcc--C-CCcCeEEec-cceEEEEEecCCCcHHH-cch--hhHHHHHHHHHHHHHHHH---HCCCEeC
Confidence            567899999999999  5 777776544 56799999999999999 532  335579999999999999   9999999


Q ss_pred             cCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccc
Q 044022           93 NFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYIS  143 (241)
Q Consensus        93 dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~  143 (241)
                      ||||+|||++ ++.++|+|||+++..               ..+.|||++.
T Consensus       218 Dlkp~NILl~-~~~vkl~DFG~a~~~---------------~~~~a~e~l~  252 (282)
T 1zar_A          218 DLSQYNVLVS-EEGIWIIDFPQSVEV---------------GEEGWREILE  252 (282)
T ss_dssp             CCSTTSEEEE-TTEEEECCCTTCEET---------------TSTTHHHHHH
T ss_pred             CCCHHHEEEE-CCcEEEEECCCCeEC---------------CCCCHHHHHH
Confidence            9999999999 999999999998642               3357888774

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.54  E-value=1.2e-14  Score=114.22  Aligned_cols=97  Identities=12%  Similarity=0.097  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHhcCCCcc--cceeeeeeeCCcceEEEEecCC-C----CHHHhhcCC-CchHHHHHHHHHHHhchhhcCC
Q 044022           14 GSCINNITYAAQMSHNHI--LKRIGCCLQTPIPILVFQSVEY-G----TLRDCIFGA-PLPRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        14 ~~~~~e~~~l~~l~h~~i--v~~~~~~~~~~~~~lv~e~~~~-~----sL~~~l~~~-~~~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ..+.+|++++.++.|+++  +..+++    +..++||||+.+ |    +|.+..... ......++.+++.|+.+||.  
T Consensus       115 ~~~~~E~~~l~~l~~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~~~~~~~~~i~~qi~~~l~~lH~--  188 (258)
T 1zth_A          115 IWTEKEFRNLERAKEAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRELKELDVEGIFNDVVENVKRLYQ--  188 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGGGGGSCHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHhCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhccChHHHHHHHHHHHHHHHHHHH--
Confidence            368899999999988765  333332    357999999942 3    777765432 23567899999999999994  


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceec
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISI  118 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~  118 (241)
                      +.+++||||||.|||++.  .++|+|||++...
T Consensus       189 ~~givHrDlkp~NILl~~--~~~liDFG~a~~~  219 (258)
T 1zth_A          189 EAELVHADLSEYNIMYID--KVYFIDMGQAVTL  219 (258)
T ss_dssp             TSCEECSSCSTTSEEESS--SEEECCCTTCEET
T ss_pred             HCCEEeCCCCHHHEEEcC--cEEEEECcccccC
Confidence            468999999999999998  8999999999754

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.34  E-value=4e-13  Score=110.45  Aligned_cols=71  Identities=18%  Similarity=0.230  Sum_probs=59.3

Q ss_pred             ceEEEEecCCCCHHHhhcCCCchHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCC----------CeEEeecc
Q 044022           44 PILVFQSVEYGTLRDCIFGAPLPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEEN----------VAKWFDFL  113 (241)
Q Consensus        44 ~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~----------~~~l~df~  113 (241)
                      .++||||+.|++|..+...  .....++.|++.++.+||   ..++|||||||.|||++.++          .+.|+||+
T Consensus       186 ~~LVME~i~G~~L~~l~~~--~~~~~l~~qll~~l~~lH---~~gIVHrDLKp~NILl~~dgd~~d~~~~~~~~~iID~~  260 (397)
T 4gyi_A          186 HTIVMSLVDALPMRQVSSV--PDPASLYADLIALILRLA---KHGLIHGDFNEFNILIREEKDAEDPSSITLTPIIIXFP  260 (397)
T ss_dssp             TEEEEECCSCEEGGGCCCC--SCHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEEEEEECSSCTTSEEEEEEECCCT
T ss_pred             ceEEEEecCCccHhhhccc--HHHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHEEEeCCCCcccccccccceEEEEeC
Confidence            4799999999888775443  234567899999999999   89999999999999998776          38999999


Q ss_pred             CceecC
Q 044022          114 LSISIP  119 (241)
Q Consensus       114 ~~~~~~  119 (241)
                      .+....
T Consensus       261 Q~V~~~  266 (397)
T 4gyi_A          261 QMVSMD  266 (397)
T ss_dssp             TCEETT
T ss_pred             CcccCC
Confidence            887643

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=99.07  E-value=3e-10  Score=89.02  Aligned_cols=103  Identities=10%  Similarity=-0.044  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHhcC-CCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCchHHHHHHHHHHHhchhhcC-------
Q 044022           13 YGSCINNITYAAQMS-HNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDIVNSLAYLHFG-------   84 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~-h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~i~~~l~~lh~~-------   84 (241)
                      ...+.+|+.+++.+. +..+.++++++...+..++|||+++|.+|.+.+.. ......++.+++.+++.||..       
T Consensus        53 ~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e~i~G~~l~~~~~~-~~~~~~~~~~l~~~l~~LH~~~~~~~~~  131 (263)
T 3tm0_A           53 TYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEADGVLCSEEYED-EQSPEKIIELYAECIRLFHSIDISDCPY  131 (263)
T ss_dssp             TTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCSSEEHHHHCCT-TTCHHHHHHHHHHHHHHHHHSCCTTCSC
T ss_pred             HHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEEEEecCCeehhhccCC-cccHHHHHHHHHHHHHHHhCCCcccCCC
Confidence            346889999999994 56778899999888889999999999999886432 223457788888899999941       


Q ss_pred             -------------------------------------------------CCCCceeccCCCCCeeecCCCCeEEeeccCc
Q 044022           85 -------------------------------------------------FPRPIVLRNFKTQNILFNEENVAKWFDFLLS  115 (241)
Q Consensus        85 -------------------------------------------------~~~~ivh~dl~~~nil~~~~~~~~l~df~~~  115 (241)
                                                                       ....++|+|+++.||+++....+.|+||+.+
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a  211 (263)
T 3tm0_A          132 TNSLDSRLAELDYLLNNDLADVDCENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRS  211 (263)
T ss_dssp             BCCHHHHHHHHHHHHHTTCSCCSGGGGSTTCSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTC
T ss_pred             cchHHHHHHHHHHHHhccccccccccccccccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhc
Confidence                                                             0144899999999999987666679999876


Q ss_pred             e
Q 044022          116 I  116 (241)
Q Consensus       116 ~  116 (241)
                      .
T Consensus       212 ~  212 (263)
T 3tm0_A          212 G  212 (263)
T ss_dssp             E
T ss_pred             c
Confidence            3

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=99.02  E-value=4.1e-10  Score=87.86  Aligned_cols=99  Identities=10%  Similarity=-0.014  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHhcCCCc--ccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCchHHHHHHHHHHHhchhhcCC------
Q 044022           14 GSCINNITYAAQMSHNH--ILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDIVNSLAYLHFGF------   85 (241)
Q Consensus        14 ~~~~~e~~~l~~l~h~~--iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~i~~~l~~lh~~~------   85 (241)
                      ..+.+|+.+++.+.+.+  +.+++++...++..++||||++|.+|.  ...  .....++.+++..++.||...      
T Consensus        58 ~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~i~G~~l~--~~~--~~~~~~~~~l~~~l~~lh~~~~~~~~~  133 (264)
T 1nd4_A           58 NELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLL--SSH--LAPAEKVSIMADAMRRLHTLDPATCPF  133 (264)
T ss_dssp             SCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEETT--TSC--CCHHHHHHHHHHHHHHHTTSCGGGCCC
T ss_pred             hhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEecCCcccC--cCc--CCHhHHHHHHHHHHHHHhCCCCCCCCC
Confidence            56789999999995544  456888887777889999999998884  221  223456777777788887321      


Q ss_pred             -------------------------------------------------CCCceeccCCCCCeeecCCCCeEEeeccCce
Q 044022           86 -------------------------------------------------PRPIVLRNFKTQNILFNEENVAKWFDFLLSI  116 (241)
Q Consensus        86 -------------------------------------------------~~~ivh~dl~~~nil~~~~~~~~l~df~~~~  116 (241)
                                                                       ...++|+|++|.||+++.++.+.|+||+.+.
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~  213 (264)
T 1nd4_A          134 DHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLG  213 (264)
T ss_dssp             BCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCE
T ss_pred             chHHHHHHHHHHHHHhcCCccchhhhhhccCccHHHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhcc
Confidence                                                             1129999999999999877667799998774

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=98.81  E-value=7.8e-09  Score=84.69  Aligned_cols=105  Identities=16%  Similarity=0.174  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHhcCC--CcccceeeeeeeC---CcceEEEEecCCCCHHHh-hcCCC-chHHHHHHHHHHHhchhhcCC
Q 044022           13 YGSCINNITYAAQMSH--NHILKRIGCCLQT---PIPILVFQSVEYGTLRDC-IFGAP-LPRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h--~~iv~~~~~~~~~---~~~~lv~e~~~~~sL~~~-l~~~~-~~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ...+.+|+.+++.|..  ..+++++.++...   +..++|||+++|.++.+. +.... ..+..++.+++..|+.||...
T Consensus        80 ~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vme~v~G~~l~~~~~~~l~~~~~~~~~~~l~~~La~LH~~~  159 (359)
T 3dxp_A           80 AHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIMEFVSGRVLWDQSLPGMSPAERTAIYDEMNRVIAAMHTVD  159 (359)
T ss_dssp             --CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEEECCCCBCCCCTTCTTCCHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEEEecCCeecCCCccccCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            4578889999999964  4577888888766   458999999998887542 22211 245667888888888888410


Q ss_pred             -------------------------------------------------------CCCceeccCCCCCeeecCCCC--eE
Q 044022           86 -------------------------------------------------------PRPIVLRNFKTQNILFNEENV--AK  108 (241)
Q Consensus        86 -------------------------------------------------------~~~ivh~dl~~~nil~~~~~~--~~  108 (241)
                                                                             ...++|+|+++.||+++.++.  +.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~  239 (359)
T 3dxp_A          160 YQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIPAMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLA  239 (359)
T ss_dssp             TTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCHHHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEE
T ss_pred             chhccccccCCCCCchHHHHHHHHHHHHhcCCcCChHHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEE
Confidence                                                                   246899999999999987753  68


Q ss_pred             EeeccCcee
Q 044022          109 WFDFLLSIS  117 (241)
Q Consensus       109 l~df~~~~~  117 (241)
                      |+||+.+..
T Consensus       240 viDwe~a~~  248 (359)
T 3dxp_A          240 VLDWELSTL  248 (359)
T ss_dssp             ECCCTTCEE
T ss_pred             EECcccccc
Confidence            999998864

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=98.58  E-value=1.9e-08  Score=80.55  Aligned_cols=157  Identities=15%  Similarity=0.213  Sum_probs=91.0

Q ss_pred             cHHHHHHHHHHHHhcC-CCc--ccceeeeeeeCC---cceEEEEecCCCCHHHhhc-CCC-chHHHHHHHHHHHhchhhc
Q 044022           12 TYGSCINNITYAAQMS-HNH--ILKRIGCCLQTP---IPILVFQSVEYGTLRDCIF-GAP-LPRLKIASDIVNSLAYLHF   83 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~-h~~--iv~~~~~~~~~~---~~~lv~e~~~~~sL~~~l~-~~~-~~~~~~~~~i~~~l~~lh~   83 (241)
                      ....+.+|+++++.+. +..  +.+++......+   ..++||++++|.+|.+... ... ..+..++.+++..++.||.
T Consensus        53 ~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i~G~~l~~~~~~~l~~~~~~~~~~~l~~~la~LH~  132 (304)
T 3sg8_A           53 GSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKIKGVPLTPLLLNNLPKQSQNQAAKDLARFLSELHS  132 (304)
T ss_dssp             HHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECCCCEECCHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEcccCCeECCccccccCCHHHHHHHHHHHHHHHHHHHc
Confidence            3567889999999984 333  234444433322   4589999999988865322 111 1233445555555555542


Q ss_pred             -------------------------------------------------------CCCCCceeccCCCCCeeecC--CCC
Q 044022           84 -------------------------------------------------------GFPRPIVLRNFKTQNILFNE--ENV  106 (241)
Q Consensus        84 -------------------------------------------------------~~~~~ivh~dl~~~nil~~~--~~~  106 (241)
                                                                             .....++|+|+++.||+++.  ...
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~  212 (304)
T 3sg8_A          133 INISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQMKKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTI  212 (304)
T ss_dssp             SCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEE
T ss_pred             CCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccHHHHHHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCE
Confidence                                                                   11235799999999999998  456


Q ss_pred             eEEeeccCceecCCCCcceeecccccCCCccCcccccc---c-----------CCCcchhhHHHHHHHHHHHhcCcccc
Q 044022          107 AKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI---C-----------VLNEKSNVFSFGAFLFELLAGRIHIW  171 (241)
Q Consensus       107 ~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~---~-----------~~~~~~Di~s~G~~~~~~~~g~~p~~  171 (241)
                      +.++||+.+............   .....-..|+....   .           ......+.|+++.++|.+.+|..+|.
T Consensus       213 ~~~iD~~~~~~~~~~~Dl~~~---~~~~~~~~~~~~~~~l~~Y~~~~~~~~~~r~~~~~~~~~l~~~~~~~~~g~~~~~  288 (304)
T 3sg8_A          213 CGIIDFGDAAISDPDNDFISL---MEDDEEYGMEFVSKILNHYKHKDIPTVLEKYRMKEKYWSFEKIIYGKEYGYMDWY  288 (304)
T ss_dssp             EEECCCTTCEEECTTHHHHTT---CCTTTSCCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             EEEEeCCCCccCChHHHHHHH---HhhccccCHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            789999987654321100000   00000011211110   0           01122688999999999999998874

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=98.34  E-value=2.2e-06  Score=67.13  Aligned_cols=104  Identities=12%  Similarity=0.033  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHhcCC-CcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCchHHHHHHHHHHHhchhhc--------
Q 044022           13 YGSCINNITYAAQMSH-NHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDIVNSLAYLHF--------   83 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h-~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~i~~~l~~lh~--------   83 (241)
                      ...+.+|..+|+.|.. --+.++++++...+..++|||+++|.++.+...........+..++...++-||.        
T Consensus        63 ~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G~~~~~~~~~~~~~~~~~~~~l~~~L~~Lh~~~~~~~~~  142 (272)
T 4gkh_A           63 ANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGKTAFQVLEEYPDSGENIVDALAVFLRRLHSIPVCNCPF  142 (272)
T ss_dssp             HHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCSEEHHHHHHHCGGGHHHHHHHHHHHHHHHHTSCGGGCCB
T ss_pred             HhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCCccccccccCCHHHHHHHHHHHHHHHHHhcCCCcccCCc
Confidence            4567889999998843 2356788888888899999999998887765433322222333333333333331        


Q ss_pred             -----------------------------------------------CCCCCceeccCCCCCeeecCCCCeEEeeccCce
Q 044022           84 -----------------------------------------------GFPRPIVLRNFKTQNILFNEENVAKWFDFLLSI  116 (241)
Q Consensus        84 -----------------------------------------------~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~  116 (241)
                                                                     .....++|+|+.+.||+++..+.+-|+||+.+.
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~  222 (272)
T 4gkh_A          143 NSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVG  222 (272)
T ss_dssp             BCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCHHHHHHHHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred             CcccccchhhHHHHHHHhhhhhhhccccccchHHHHHHHHHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECcccc
Confidence                                                           001237899999999999987777899998774

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=97.87  E-value=4.7e-05  Score=60.80  Aligned_cols=47  Identities=11%  Similarity=0.044  Sum_probs=34.4

Q ss_pred             cHHHHHHHHHHHHhcCCC---cccceeeeee-eCCcceEEEEecCCCCHHH
Q 044022           12 TYGSCINNITYAAQMSHN---HILKRIGCCL-QTPIPILVFQSVEYGTLRD   58 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~---~iv~~~~~~~-~~~~~~lv~e~~~~~sL~~   58 (241)
                      ....+.+|+++|+.|.+.   .+.+.+.+.. ..+..++||++++|.++..
T Consensus        52 ~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G~~l~~  102 (306)
T 3tdw_A           52 GADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQGQILGE  102 (306)
T ss_dssp             HHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCCSEECHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccCCeECch
Confidence            356788999999999653   2445566553 3456789999999988866

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=97.61  E-value=9.9e-05  Score=60.04  Aligned_cols=45  Identities=9%  Similarity=-0.079  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHhcCC---CcccceeeeeeeC---CcceEEEEecCCCCHHH
Q 044022           14 GSCINNITYAAQMSH---NHILKRIGCCLQT---PIPILVFQSVEYGTLRD   58 (241)
Q Consensus        14 ~~~~~e~~~l~~l~h---~~iv~~~~~~~~~---~~~~lv~e~~~~~sL~~   58 (241)
                      ..+.+|+.+++.|..   -.+.+++.++...   +..++|||+++|.++.+
T Consensus        72 ~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~~g~~~~v~e~l~G~~l~~  122 (357)
T 3ats_A           72 YRLDHQFEVIRLVGELTDVPVPRVRWIETTGDVLGTPFFLMDYVEGVVPPD  122 (357)
T ss_dssp             CCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTTTSSCEEEEECCCCBCCCB
T ss_pred             hHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCccCCceEEEEecCCCChhh
Confidence            467889999998842   3466778777654   35689999999877653

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=96.90  E-value=0.0052  Score=49.21  Aligned_cols=32  Identities=16%  Similarity=0.128  Sum_probs=28.4

Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCcee
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSIS  117 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~  117 (241)
                      ...++|+|+.+.||+++.++.+.|+||+.+..
T Consensus       221 ~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~~  252 (346)
T 2q83_A          221 SPNLCHQDYGTGNTLLGENEQIWVIDLDTVSF  252 (346)
T ss_dssp             SCCEECSSCSTTSEEECGGGCEEECCCTTCEE
T ss_pred             cCceecCCCCcccEEEeCCCcEEEEehhhccc
Confidence            57899999999999998888899999987753

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=96.72  E-value=0.0034  Score=50.40  Aligned_cols=34  Identities=26%  Similarity=0.226  Sum_probs=28.5

Q ss_pred             CCCceeccCCCCCeeecCC----CCeEEeeccCceecC
Q 044022           86 PRPIVLRNFKTQNILFNEE----NVAKWFDFLLSISIP  119 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~----~~~~l~df~~~~~~~  119 (241)
                      ...++|+|+.+.||+++.+    +.+.|+||+.+....
T Consensus       182 ~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~G~  219 (333)
T 3csv_A          182 DMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKLGH  219 (333)
T ss_dssp             CCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEEEC
T ss_pred             CCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCcCC
Confidence            5579999999999999874    678999999886543

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=96.47  E-value=0.0049  Score=50.77  Aligned_cols=31  Identities=16%  Similarity=0.219  Sum_probs=26.0

Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCcee
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSIS  117 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~  117 (241)
                      ...++|+|+.+.||+++.+ .+.++||..+..
T Consensus       226 ~~~L~HGDl~~~Nil~~~~-~~~lID~e~a~~  256 (397)
T 2olc_A          226 AETLIHGDLHTGSIFASEH-ETKVIDPEFAFY  256 (397)
T ss_dssp             CCEEECSCCSGGGEEECSS-CEEECCCTTCEE
T ss_pred             CCceeeCCCCcCcEEEeCC-CeEEEeCccccc
Confidence            4578999999999999865 488999987754

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=96.43  E-value=0.0034  Score=51.52  Aligned_cols=31  Identities=26%  Similarity=0.310  Sum_probs=26.5

Q ss_pred             CCCceeccCCCCCeeecCC----CCeEEeeccCce
Q 044022           86 PRPIVLRNFKTQNILFNEE----NVAKWFDFLLSI  116 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~----~~~~l~df~~~~  116 (241)
                      ...++|+|+.+.||+++.+    +.+.++||..+.
T Consensus       219 ~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~  253 (379)
T 3feg_A          219 PVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSS  253 (379)
T ss_dssp             CEEEECSCCCGGGEEEESCC---CCEEECCCTTCE
T ss_pred             CcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCC
Confidence            3468999999999999876    688999998774

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=96.37  E-value=0.0082  Score=47.90  Aligned_cols=44  Identities=7%  Similarity=-0.022  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHhcC---CCcccceeeeeeeCCcceEEEEecCCCCH
Q 044022           13 YGSCINNITYAAQMS---HNHILKRIGCCLQTPIPILVFQSVEYGTL   56 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~---h~~iv~~~~~~~~~~~~~lv~e~~~~~sL   56 (241)
                      ...+..|+..|+.|.   ...+++++.+....+..++|||++++.++
T Consensus        72 ~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l~G~~~  118 (312)
T 3jr1_A           72 RSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEALNKSKN  118 (312)
T ss_dssp             HHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECCCCCCC
T ss_pred             HHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEeccCCCC
Confidence            566889999999983   25677888888777889999999987654

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=96.21  E-value=0.0031  Score=49.94  Aligned_cols=32  Identities=16%  Similarity=0.007  Sum_probs=26.0

Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceec
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISI  118 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~  118 (241)
                      ...++|+|+.+.||+ ..++.+.++||..+...
T Consensus       172 ~~~l~HgDl~~~Nil-~~~~~~~lID~e~a~~g  203 (301)
T 3dxq_A          172 PLAACHCDPLCENFL-DTGERMWIVDWEYSGMN  203 (301)
T ss_dssp             CCEEECSCCCGGGEE-ECSSCEEECCCTTCEEE
T ss_pred             CceeeccCCCcCCEE-ECCCCEEEEecccccCC
Confidence            345899999999999 56677899999887643

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=95.89  E-value=0.011  Score=49.30  Aligned_cols=39  Identities=13%  Similarity=0.049  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHhcCCCcc-cceeeeeeeCCcceEEEEecCCCCH
Q 044022           14 GSCINNITYAAQMSHNHI-LKRIGCCLQTPIPILVFQSVEYGTL   56 (241)
Q Consensus        14 ~~~~~e~~~l~~l~h~~i-v~~~~~~~~~~~~~lv~e~~~~~sL   56 (241)
                      ..+.+|..+++.|...++ .++++.+.+    .+|+||++|.+|
T Consensus       120 ~~li~E~~~l~~L~~~g~~P~l~~~~~~----g~v~e~l~G~~l  159 (429)
T 1nw1_A          120 SHLVAESVIFTLLSERHLGPKLYGIFSG----GRLEEYIPSRPL  159 (429)
T ss_dssp             HHHHHHHHHHHHHHHTTSSSCEEEEETT----EEEECCCCEEEC
T ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEEeCC----CEEEEEeCCccc
Confidence            567789999998843334 567766532    389999986444

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=93.67  E-value=0.053  Score=44.95  Aligned_cols=32  Identities=9%  Similarity=0.226  Sum_probs=28.2

Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceec
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISI  118 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~  118 (241)
                      ...++|+|+.+.|||++.++ +.++||+.+...
T Consensus       231 ~~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G  262 (420)
T 2pyw_A          231 AQALIHGDLHTGSVMVTQDS-TQVIDPEFSFYG  262 (420)
T ss_dssp             CCEEECSCCSGGGEEECSSC-EEECCCTTCEEE
T ss_pred             CCeEEecCCCCCcEEEeCCC-CEEEeCcccccC
Confidence            67899999999999998776 999999888654

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=91.79  E-value=0.052  Score=43.05  Aligned_cols=32  Identities=16%  Similarity=0.452  Sum_probs=26.8

Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCcee
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSIS  117 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~  117 (241)
                      ..+++|+|+.+.||+++.+..+.++||+.+..
T Consensus       186 ~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~~  217 (322)
T 2ppq_A          186 PAGVIHADLFQDNVFFLGDELSGLIDFYFACN  217 (322)
T ss_dssp             CEEEECSCCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             CcccCCCCCCccCEEEeCCceEEEecchhccC
Confidence            45689999999999998876668999987753

>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}

Probab=91.54  E-value=0.34  Score=36.18  Aligned_cols=122  Identities=7%  Similarity=-0.018  Sum_probs=77.5

Q ss_pred             HHHHHHhcCCCcccceeeeeeeCCcceEEEEecC-CCCHHHhhcCCCchHHHHHHHHHHHhchhhcCCCCCceeccCCCC
Q 044022           19 NITYAAQMSHNHILKRIGCCLQTPIPILVFQSVE-YGTLRDCIFGAPLPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQ   97 (241)
Q Consensus        19 e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~sL~~~l~~~~~~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~   97 (241)
                      |+.+|.. .||++++. .+-...+.+.+.++.-+ +-++...-+.....+++++.+|+....+++     .-+|--+.|+
T Consensus        36 el~LL~~-~~~~Fl~~-~I~e~eD~v~~~y~~~~~~~~f~~ik~~~~~eKlr~l~ni~~l~~~~~-----~r~tf~L~P~  108 (215)
T 4ann_A           36 LMYLLEQ-HSPYFIDA-ELTELRDSFQIHYDINDNHTPFDNIKSFTKNEKLRYLLNIKNLEEVNR-----TRYTFVLAPD  108 (215)
T ss_dssp             GGGGGGS-CCTTBCCE-EEEECSSEEEEEECCCTTSEEGGGGGGSCHHHHHHHHHHGGGGGGGGG-----SSEECCCSGG
T ss_pred             HHHHHhc-cCCcccce-EEEEcccEEEEEEEcCcccCCHHHHHhcCHHHHHHHHHHHHHHHHHhc-----CceEEEEecc
Confidence            3333333 67888877 45555665555555433 234444333333468888989888776665     3478899999


Q ss_pred             CeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhH-HHHHHHHHHHhcCccccc
Q 044022           98 NILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVF-SFGAFLFELLAGRIHIWD  172 (241)
Q Consensus        98 nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~-s~G~~~~~~~~g~~p~~~  172 (241)
                      |++++.++.+++.--|+...+                   +|.     .+ ...|.| ..=+++..+++++..|.+
T Consensus       109 NL~f~~~~~p~i~~RGik~~l-------------------~P~-----~~-~ee~fL~qyKAliiall~~K~~Fe~  159 (215)
T 4ann_A          109 ELFFTRDGLPIAKTRGLQNVV-------------------DPL-----PV-SEAEFLTRYKALVICAFNEKQSFDA  159 (215)
T ss_dssp             GEEECTTSCEEESCCEETTTB-------------------SCC-----CC-CHHHHHHHHHHHHHHHHCTTCCHHH
T ss_pred             eEEEcCCCCEEEEEccCccCC-------------------CCC-----CC-CHHHHHHHHHHHHHHHHcCCCCHHH
Confidence            999999999999887654221                   221     11 222333 567778888889888854

>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}

Probab=89.67  E-value=1  Score=33.71  Aligned_cols=114  Identities=13%  Similarity=0.113  Sum_probs=73.1

Q ss_pred             CCCcccceeeeeeeCCcceEEEEecC-CCCHHHhhcCCCchHHHHHHHHHHHhc-hhhcCCCCCceeccCCCCCeeecCC
Q 044022           27 SHNHILKRIGCCLQTPIPILVFQSVE-YGTLRDCIFGAPLPRLKIASDIVNSLA-YLHFGFPRPIVLRNFKTQNILFNEE  104 (241)
Q Consensus        27 ~h~~iv~~~~~~~~~~~~~lv~e~~~-~~sL~~~l~~~~~~~~~~~~~i~~~l~-~lh~~~~~~ivh~dl~~~nil~~~~  104 (241)
                      .||++  -..+-..++.+.+.++.-+ +-++...-......+++++.+++.... +++     .-+|--+.|+|++++.+
T Consensus        48 ~~~~f--~~~I~~~eD~~~i~y~~~~~~~~f~~i~~~~~~eKlrll~nl~~L~~~~~~-----~r~tf~l~P~NL~f~~~  120 (219)
T 4ano_A           48 VDPCI--VRDIDVSEDEVKVVIKPPSSFLTFAAIRKTTLLSRIRAAIHLVSKVKHHSA-----RRLIFIVCPENLMFNRA  120 (219)
T ss_dssp             SCSSS--EEEEEECSSEEEEEEECCTTCEEHHHHHTSCHHHHHHHHHHHHHHHSSCCS-----SSEECCCCGGGEEECTT
T ss_pred             cCCCC--CeEEEEeCCEEEEEEEcCcccCcHHHHHhcCHHHHHHHHHHHHHHHHHhhh-----CceeEEEeCceEEEeCC
Confidence            67777  3333345666666666543 234444433333468888888887776 555     45788899999999999


Q ss_pred             CCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhH-HHHHHHHHHHhcCccccc
Q 044022          105 NVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVF-SFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       105 ~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~-s~G~~~~~~~~g~~p~~~  172 (241)
                      +.+++...|+-..                   ++|..      ....|.| ..=+++..++.++..|.+
T Consensus       121 ~~p~i~hRGi~~~-------------------lpP~e------~~ee~fl~qyKali~all~~K~~Fe~  164 (219)
T 4ano_A          121 LEPFFLHVGVKES-------------------LPPDE------WDDERLLREVKATVLALTEGEYRFDE  164 (219)
T ss_dssp             CCEEESCCEETTT-------------------BSSCS------CCHHHHHHHHHHHHHHHTTCSSCHHH
T ss_pred             CcEEEEEcCCccc-------------------CCCCC------CCHHHHHHHHHHHHHHHHcCCCCHHH
Confidence            9999998775422                   22211      1223443 566777888888877754

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=89.25  E-value=0.14  Score=40.55  Aligned_cols=30  Identities=13%  Similarity=0.112  Sum_probs=25.6

Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCcee
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSIS  117 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~  117 (241)
                      ...++|+|+++.||+++ + .+.++||+.+..
T Consensus       194 ~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~  223 (328)
T 1zyl_A          194 TVLRLHGDCHAGNILWR-D-GPMFVDLDDARN  223 (328)
T ss_dssp             CCEECCSSCSGGGEEES-S-SEEECCCTTCCE
T ss_pred             CeeeeeCCCCcccEeEc-C-CCEEEECCCCCc
Confidence            45689999999999998 4 889999987754

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=89.09  E-value=0.26  Score=39.53  Aligned_cols=33  Identities=12%  Similarity=0.138  Sum_probs=28.3

Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceec
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISI  118 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~  118 (241)
                      ...++|+|+.+.|++++.++.+.++||+.+...
T Consensus       205 ~~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~~  237 (339)
T 3i1a_A          205 KYVLCHSDIHAGNVLVGNEESIYIIDWDEPMLA  237 (339)
T ss_dssp             GCEEECSCCCGGGEEECGGGCEEECCCSSCEEE
T ss_pred             CceeEeCCCCcCCEEEeCCCeEEEEECCCCeeC
Confidence            456899999999999998888999999877543

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=87.92  E-value=0.24  Score=40.08  Aligned_cols=31  Identities=16%  Similarity=0.169  Sum_probs=24.8

Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCcee
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSIS  117 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~  117 (241)
                      ...++|+|+.+.||+++.+. +.++||+.+..
T Consensus       211 ~~~l~HgDl~~~Nil~~~~~-~~lID~e~a~~  241 (369)
T 3c5i_A          211 TIVFCHNDLQENNIINTNKC-LRLIDFEYSGF  241 (369)
T ss_dssp             CEEEECSCCCGGGEEECC-C-EEECCCTTCEE
T ss_pred             CeEEEeCCCCcccEEecCCc-EEEEEecCCCC
Confidence            34689999999999997654 89999987753

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=87.74  E-value=0.043  Score=46.48  Aligned_cols=32  Identities=6%  Similarity=-0.220  Sum_probs=25.8

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTP   42 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~   42 (241)
                      .+.++|..|++.+.+++|+|+|++.|||....
T Consensus       321 ~g~~eF~~Eve~L~~i~HrNLV~L~gyC~s~~  352 (487)
T 3oja_A          321 QGSETERLECERENQARQREIDALKEQYRTVI  352 (487)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             ccHHHHHHHHHHHhcccccchhhHHHHhcChH
Confidence            45778999999999999999999999997643

>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A

Probab=86.80  E-value=1.7  Score=32.53  Aligned_cols=98  Identities=12%  Similarity=-0.004  Sum_probs=57.3

Q ss_pred             CCHHHhhcCCC--c---hHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeec
Q 044022           54 GTLRDCIFGAP--L---PRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTD  128 (241)
Q Consensus        54 ~sL~~~l~~~~--~---~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~  128 (241)
                      .||.+.|+...  .   +.+.++.|.+.+|.-+-.  ...-..+=+.|..|++..+|.+.+.+ ..+.            
T Consensus        33 vSL~eIL~~~~~PlsEEqaWALc~Qc~~~L~~~~~--~~~~~~~i~~~~~i~l~~dG~V~f~~-~~s~------------   97 (229)
T 2yle_A           33 LSLEEILRLYNQPINEEQAWAVCYQCCGSLRAAAR--RRQPRHRVRSAAQIRVWRDGAVTLAP-AADD------------   97 (229)
T ss_dssp             EEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHH--TTCCCCCCCSGGGEEEETTSCEEECC-C---------------
T ss_pred             ccHHHHHHHcCCCcCHHHHHHHHHHHHHHHHhhhh--cccCCceecCCcceEEecCCceeccc-cccc------------
Confidence            47888876542  2   678888888888776521  11111233456888899998887653 1110            


Q ss_pred             ccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhcCcc
Q 044022          129 RVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIH  169 (241)
Q Consensus       129 ~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~~p  169 (241)
                        .....+.|||... ...+.+.-|||+|+++|.-+--..|
T Consensus        98 --~~~~~~~~pe~~~-~~~te~~~IysLG~tLY~ALDygL~  135 (229)
T 2yle_A           98 --AGEPPPVAGKLGY-SQCMETEVIESLGIIIYKALDYGLK  135 (229)
T ss_dssp             -----------CCSS-SSSCHHHHHHHHHHHHHHHHTTTCC
T ss_pred             --ccccCCCChhhcc-ccchHHHHHHHHHHHHHHHhhcCCC
Confidence              0122356777764 3445777899999999998875544

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=86.62  E-value=0.35  Score=40.66  Aligned_cols=36  Identities=8%  Similarity=-0.119  Sum_probs=25.5

Q ss_pred             HHHHHHHHhcCCCcc-cceeeeeeeCCcceEEEEecCCCCH
Q 044022           17 INNITYAAQMSHNHI-LKRIGCCLQTPIPILVFQSVEYGTL   56 (241)
Q Consensus        17 ~~e~~~l~~l~h~~i-v~~~~~~~~~~~~~lv~e~~~~~sL   56 (241)
                      .+|..+++.|...++ .++++.+.  +  .+|+||++|.+|
T Consensus       152 ~~E~~vl~~L~~~gl~P~ll~~~~--~--G~v~e~I~G~~l  188 (458)
T 2qg7_A          152 EREKKISCILYNKNIAKKIYVFFT--N--GRIEEFMDGYAL  188 (458)
T ss_dssp             HHHHHHHHHHTTSSSBCCEEEEET--T--EEEEECCCSEEC
T ss_pred             HHHHHHHHHHHhcCCCCCEEEEeC--C--eEEEEeeCCccC
Confidence            589999999965455 46777762  2  359999987544

>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*

Probab=82.60  E-value=0.67  Score=38.07  Aligned_cols=29  Identities=24%  Similarity=0.287  Sum_probs=24.3

Q ss_pred             ceeccCCCCCeee------cCCCCeEEeeccCcee
Q 044022           89 IVLRNFKTQNILF------NEENVAKWFDFLLSIS  117 (241)
Q Consensus        89 ivh~dl~~~nil~------~~~~~~~l~df~~~~~  117 (241)
                      ++|+|+.+.||++      +....+.++||..+..
T Consensus       246 fcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~  280 (401)
T 3g15_A          246 FCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY  280 (401)
T ss_dssp             EECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEE
T ss_pred             eEEecCCCCeEEEecCcccCcCCeEEEechHhccC
Confidence            5799999999999      4467799999988753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	241
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	5e-30
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	3e-27
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	4e-26
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	6e-26
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	4e-25
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	7e-25
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	8e-25
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	6e-24
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	7e-24
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	1e-23
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	1e-23
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	1e-23
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	2e-23
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	2e-23
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	3e-23
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	4e-23
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	1e-22
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	1e-21
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	2e-21
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	2e-21
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	2e-21
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	2e-21
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	2e-21
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	8e-21
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	1e-20
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	1e-20
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	2e-20
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	6e-20
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	1e-19
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	1e-19
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	1e-19
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	6e-19
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	2e-18
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	3e-17
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	4e-17
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	6e-17
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	2e-16
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	2e-16
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	2e-16
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	2e-16
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	4e-16
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	8e-16
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	9e-16
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	5e-15
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	2e-14
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	2e-14
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	3e-14
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	3e-14
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	6e-14
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	1e-13
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	2e-13
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	8e-13
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	2e-12
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	8e-12
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	5e-11
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	2e-10
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	2e-09
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	3e-09
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	1e-08
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	6e-08

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (277), Expect = 5e-30
 Identities = 47/233 (20%), Positives = 88/233 (37%), Gaps = 30/233 (12%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLP-----RLKIA 71
            N +    +  H +IL  +G     P   +V Q  E  +L   +            + IA
Sbjct: 52  KNEVGVLRKTRHVNILLFMGYSTA-PQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIA 110

Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
                 + YLH    + I+ R+ K+ NI  +E+   K  DF L+            +++ 
Sbjct: 111 RQTAQGMDYLHA---KSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLS 167

Query: 132 GTRGYSAPEYI---SICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYL 188
           G+  + APE I        + +S+V++FG  L+EL+ G++              + N   
Sbjct: 168 GSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLP-------------YSNINN 214

Query: 189 KNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD 241
           ++ +      G  +P + +      K        +L  EC+    ++RP    
Sbjct: 215 RDQIIFMVGRGYLSPDLSKVRSNCPKA-----MKRLMAECLKKKRDERPLFPQ 262

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (259), Expect = 3e-27
 Identities = 42/245 (17%), Positives = 88/245 (35%), Gaps = 24/245 (9%)

Query: 18  NNITYAAQMSHNHILKRIGCCLQTPIPI----LVFQSVEYGTLRDCIFGAPLP---RLKI 70
             I     + H +IL  I    +         LV    E+G+L D +    +     +K+
Sbjct: 46  AEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKL 105

Query: 71  ASDIVNSLAYLH-----FGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGE--T 123
           A    + LA+LH           I  R+ K++NIL  +       D  L++         
Sbjct: 106 ALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTI 165

Query: 124 HITTDRVIGTRGYSAPEYISICV------LNEKSNVFSFGAFLFELLAGRIHIWDLLKDT 177
            I  +  +GT+ Y APE +   +        +++++++ G   +E+              
Sbjct: 166 DIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGI---HE 222

Query: 178 HDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIP-CIEKEQQLHASAQLTLECVNNSPEDR 236
                +++    +   ++    +    +  +IP   +  + L   A++  EC   +   R
Sbjct: 223 DYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAAR 282

Query: 237 PTMVD 241
            T + 
Sbjct: 283 LTALR 287

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (250), Expect = 4e-26
 Identities = 52/231 (22%), Positives = 88/231 (38%), Gaps = 33/231 (14%)

Query: 15  SCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIF---GAPLP---RL 68
           + +       Q+ H  +++      Q PI  ++ + +E G+L D +    G  L     L
Sbjct: 54  AFLAEANLMKQLQHQRLVRLYAVVTQEPI-YIITEYMENGSLVDFLKTPSGIKLTINKLL 112

Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTD 128
            +A+ I   +A++     R  + R+ +  NIL ++    K  DF L+  I + E      
Sbjct: 113 DMAAQIAEGMAFIEE---RNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTARE- 168

Query: 129 RVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYL 188
                  ++APE I+      KS+V+SFG  L E++      +         G    E +
Sbjct: 169 GAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYP--------GMTNPEVI 220

Query: 189 KNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM 239
           +N     R       +   + P            QL   C    PEDRPT 
Sbjct: 221 QNLERGYR------MVRPDNCP--------EELYQLMRLCWKERPEDRPTF 257

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (251), Expect = 6e-26
 Identities = 42/247 (17%), Positives = 85/247 (34%), Gaps = 30/247 (12%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA-PLP---RLKIAS 72
           I  +    + +  +I+   G         +  + ++ G+L   +  A  +P     K++ 
Sbjct: 52  IRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSI 111

Query: 73  DIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIG 132
            ++  L YL       I+ R+ K  NIL N     K  DF +S  + +   +      +G
Sbjct: 112 AVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMAN----SFVG 165

Query: 133 TRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRI--------------------HIWD 172
           TR Y +PE +     + +S+++S G  L E+  GR                        +
Sbjct: 166 TRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAE 225

Query: 173 LLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNS 232
                   G   + Y  +         +   I+ +  P +              +C+  +
Sbjct: 226 TPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKN 285

Query: 233 PEDRPTM 239
           P +R  +
Sbjct: 286 PAERADL 292

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.7 bits (245), Expect = 4e-25
 Identities = 43/228 (18%), Positives = 81/228 (35%), Gaps = 31/228 (13%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLP-----RLKIA 71
           ++     A + + H+ + +G C  T    L+ Q + +G L D +            L   
Sbjct: 59  LDEAYVMASVDNPHVCRLLGIC-LTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWC 117

Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
             I   + YL     R +V R+   +N+L       K  DF L+  +   E     +   
Sbjct: 118 VQIAKGMNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGK 174

Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNY 191
               + A E I   +   +S+V+S+G  ++EL+      +D +          +E     
Sbjct: 175 VPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA--------SEISSIL 226

Query: 192 LEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM 239
            + +R    P PI   D+              + ++C     + RP  
Sbjct: 227 EKGERLP-QP-PICTIDV------------YMIMVKCWMIDADSRPKF 260

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.0 bits (241), Expect = 7e-25
 Identities = 43/232 (18%), Positives = 90/232 (38%), Gaps = 37/232 (15%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPI-LVFQSVEYGTLRDCIF---GAPLP---RLK 69
           +   +   Q+ H+++++ +G  ++    + +V + +  G+L D +     + L     LK
Sbjct: 48  LAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLK 107

Query: 70  IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR 129
            + D+  ++ YL        V R+   +N+L +E+NVAK  DF L+          T D 
Sbjct: 108 FSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASS-----TQDT 159

Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLK 189
                 ++APE +     + KS+V+SFG  L+E+ +     +              + + 
Sbjct: 160 GKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYP--------RIPLKDVVP 211

Query: 190 NYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD 241
              +  +             P         A  ++   C +     RP+ + 
Sbjct: 212 RVEKGYK------MDAPDGCP--------PAVYEVMKNCWHLDAAMRPSFLQ 249

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.4 bits (242), Expect = 8e-25
 Identities = 41/226 (18%), Positives = 83/226 (36%), Gaps = 29/226 (12%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLP---RLKIASD 73
           IN I    +  + +I+  +   L      +V + +  G+L D +    +       +  +
Sbjct: 65  INEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRE 124

Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGT 133
            + +L +LH      ++ R+ K+ NIL   +   K  DF     I   ++  +T  ++GT
Sbjct: 125 CLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRST--MVGT 179

Query: 134 RGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLE 193
             + APE ++      K +++S G    E++ G                + NE     L 
Sbjct: 180 PYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPP-------------YLNENPLRALY 226

Query: 194 DKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM 239
                G P     + +  I ++            C++   E R + 
Sbjct: 227 LIATNGTPELQNPEKLSAIFRD--------FLNRCLDMDVEKRGSA 264

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.4 bits (234), Expect = 6e-24
 Identities = 37/228 (16%), Positives = 84/228 (36%), Gaps = 31/228 (13%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLP-----RLKIA 71
           I        +SH  +++  G C +     ++ + +  G L + +            L++ 
Sbjct: 47  IEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMC 106

Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
            D+  ++ YL     +  + R+   +N L N++ V K  DF LS  + + E   +     
Sbjct: 107 KDVCEAMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSV-GSK 162

Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNY 191
               +S PE +     + KS++++FG  ++E+ +     ++   ++        E++   
Sbjct: 163 FPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETA-----EHIAQG 217

Query: 192 LEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM 239
           L   R       +                   +   C +   ++RPT 
Sbjct: 218 LRLYRPHLASEKVY-----------------TIMYSCWHEKADERPTF 248

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.8 bits (235), Expect = 7e-24
 Identities = 43/228 (18%), Positives = 80/228 (35%), Gaps = 31/228 (13%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA-PLP---RLKIAS 72
           +       Q+ + +I++ IG C +    +LV +  E G L   +     +     +++  
Sbjct: 56  LAEANVMQQLDNPYIVRMIGIC-EAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVH 114

Query: 73  DIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITT-DRVI 131
            +   + YL        V R+   +N+L   ++ AK  DF LS ++   E +        
Sbjct: 115 QVSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGK 171

Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNY 191
               + APE I+    + KS+V+SFG  ++E  +     +         G   +E     
Sbjct: 172 WPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYR--------GMKGSEVTAML 223

Query: 192 LEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM 239
            + +R             P             L   C     E+RP  
Sbjct: 224 EKGER------MGCPAGCP--------REMYDLMNLCWTYDVENRPGF 257

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.9 bits (233), Expect = 1e-23
 Identities = 33/155 (21%), Positives = 62/155 (40%), Gaps = 11/155 (7%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA-PLP---RLKIAS 72
              +   + + H +IL+  G         L+ +    GT+   +               +
Sbjct: 54  RREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYIT 113

Query: 73  DIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIG 132
           ++ N+L+Y H    + ++ R+ K +N+L       K  DF  S+  P          + G
Sbjct: 114 ELANALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRT----TLCG 166

Query: 133 TRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           T  Y  PE I   + +EK +++S G   +E L G+
Sbjct: 167 TLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 201

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 94.5 bits (234), Expect = 1e-23
 Identities = 49/253 (19%), Positives = 85/253 (33%), Gaps = 53/253 (20%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFG-------------- 62
                  A+  + +I+K +G C       L+F+ + YG L + +                
Sbjct: 64  QREAALMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDL 123

Query: 63  -----------APLP---RLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAK 108
                       PL    +L IA  +   +AYL     R  V R+  T+N L  E  V K
Sbjct: 124 STRARVSSPGPPPLSCAEQLCIARQVAAGMAYLS---ERKFVHRDLATRNCLVGENMVVK 180

Query: 109 WFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRI 168
             DF LS +I   + +           +  PE I       +S+V+++G  L+E+ +  +
Sbjct: 181 IADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGL 240

Query: 169 HIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLEC 228
             +        +G    E +    +             ++ P             L   C
Sbjct: 241 QPY--------YGMAHEEVIYYVRDGNI------LACPENCP--------LELYNLMRLC 278

Query: 229 VNNSPEDRPTMVD 241
            +  P DRP+   
Sbjct: 279 WSKLPADRPSFCS 291

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.0 bits (233), Expect = 1e-23
 Identities = 50/229 (21%), Positives = 80/229 (34%), Gaps = 33/229 (14%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLP------RLKI 70
           +       ++ H  +++      + PI I V + +  G+L D + G           + +
Sbjct: 60  LQEAQVMKKLRHEKLVQLYAVVSEEPIYI-VTEYMSKGSLLDFLKGETGKYLRLPQLVDM 118

Query: 71  ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRV 130
           A+ I + +AY+        V R+ +  NIL  E  V K  DF L+  I + E        
Sbjct: 119 AAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQ-GA 174

Query: 131 IGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKN 190
                ++APE         KS+V+SFG  L EL       +         G    E L  
Sbjct: 175 KFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYP--------GMVNREVLDQ 226

Query: 191 YLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM 239
                R           + P         +   L  +C    PE+RPT 
Sbjct: 227 VERGYR------MPCPPECP--------ESLHDLMCQCWRKEPEERPTF 261

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.6 bits (232), Expect = 2e-23
 Identities = 45/231 (19%), Positives = 85/231 (36%), Gaps = 32/231 (13%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA--PLP---RLKIA 71
           +       Q+ + +I++ IG C Q    +LV +    G L   + G    +P     ++ 
Sbjct: 57  MREAQIMHQLDNPYIVRLIGVC-QAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELL 115

Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHIT-TDRV 130
             +   + YL     +  V R+   +N+L    + AK  DF LS ++   +++ T     
Sbjct: 116 HQVSMGMKYLEE---KNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAG 172

Query: 131 IGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKN 190
                + APE I+    + +S+V+S+G  ++E L+     +              E +  
Sbjct: 173 KWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYK--------KMKGPEVMAF 224

Query: 191 YLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD 241
             + KR           + P             L  +C     EDRP  + 
Sbjct: 225 IEQGKR------MECPPECP--------PELYALMSDCWIYKWEDRPDFLT 261

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.8 bits (230), Expect = 2e-23
 Identities = 46/228 (20%), Positives = 87/228 (38%), Gaps = 31/228 (13%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLP-----RLKIA 71
           I       ++SH  +++  G CL+     LVF+ +E+G L D +            L + 
Sbjct: 48  IEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMC 107

Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
            D+   +AYL       ++ R+   +N L  E  V K  DF ++  + + +   +     
Sbjct: 108 LDVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSS-TGTK 163

Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNY 191
               +++PE  S    + KS+V+SFG  ++E+ +     +             +E +++ 
Sbjct: 164 FPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPY--------ENRSNSEVVEDI 215

Query: 192 LEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM 239
               R   +  P +                 Q+   C    PEDRP  
Sbjct: 216 STGFR---LYKPRLAST-----------HVYQIMNHCWKERPEDRPAF 249

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.8 bits (230), Expect = 3e-23
 Identities = 46/230 (20%), Positives = 81/230 (35%), Gaps = 29/230 (12%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFG----APLPRLKIAS 72
              I     ++H +++K  G   +  I  L  +    G L D I            +   
Sbjct: 51  KKEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFH 110

Query: 73  DIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIG 132
            ++  + YLH      I  R+ K +N+L +E +  K  DF L+            +++ G
Sbjct: 111 QLMAGVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCG 167

Query: 133 TRGYSAPEYISICVLN-EKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNY 191
           T  Y APE +     + E  +V+S G  L  +LAG +          D      +   ++
Sbjct: 168 TLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELP--------WDQPSDSCQEYSDW 219

Query: 192 LEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD 241
            E K +      I    +  + K              +  +P  R T+ D
Sbjct: 220 KEKKTYLNPWKKIDSAPLALLHK-------------ILVENPSARITIPD 256

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 93.1 bits (231), Expect = 4e-23
 Identities = 43/230 (18%), Positives = 80/230 (34%), Gaps = 38/230 (16%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIF-GAPLP---RLKIAS 72
           I  + +  ++ H + ++  GC L+     LV +               PL       +  
Sbjct: 63  IKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTH 122

Query: 73  DIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIG 132
             +  LAYLH      ++ R+ K  NIL +E  + K  DF  +  +         +  +G
Sbjct: 123 GALQGLAYLH---SHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAP------ANSFVG 173

Query: 133 TRGYSAPEYISIC---VLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLK 189
           T  + APE I        + K +V+S G    EL   +  ++++    +     ++    
Sbjct: 174 TPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM----NAMSALYH---- 225

Query: 190 NYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM 239
                         I   + P ++              C+   P+DRPT 
Sbjct: 226 --------------IAQNESPALQSGHWSEYFRNFVDSCLQKIPQDRPTS 261

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.1 bits (228), Expect = 1e-22
 Identities = 40/243 (16%), Positives = 80/243 (32%), Gaps = 51/243 (20%)

Query: 26  MSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLP------------------- 66
            SH +I+  +G C  +    L+F+   YG L + +                         
Sbjct: 98  GSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEED 157

Query: 67  --------RLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISI 118
                    L  A  +   + +L F   +  V R+   +N+L     V K  DF L+  I
Sbjct: 158 LNVLTFEDLLCFAYQVAKGMEFLEF---KSCVHRDLAARNVLVTHGKVVKICDFGLARDI 214

Query: 119 PEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTH 178
                ++          + APE +   +   KS+V+S+G  L+E+ +  ++ +  +    
Sbjct: 215 MSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDA 274

Query: 179 DHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT 238
           +    F + ++N  +  +       I                   +   C       RP+
Sbjct: 275 N----FYKLIQNGFKMDQPFYATEEIY-----------------IIMQSCWAFDSRKRPS 313

Query: 239 MVD 241
             +
Sbjct: 314 FPN 316

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.5 bits (219), Expect = 1e-21
 Identities = 40/236 (16%), Positives = 78/236 (33%), Gaps = 38/236 (16%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIF--GAPLP---RLKIA 71
           +  I   A   H +I+K +          ++ +    G +   +     PL       + 
Sbjct: 57  MVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVC 116

Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
              +++L YLH      I+ R+ K  NILF  +   K  DF +S           +   I
Sbjct: 117 KQTLDALNYLHD---NKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDS--FI 171

Query: 132 GTRGYSAPEYISICVL-----NEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNE 186
           GT  + APE +          + K++V+S G  L E+            + +        
Sbjct: 172 GTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEP----PHHELNPMRVLLK- 226

Query: 187 YLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQ-LTLECVNNSPEDRPTMVD 241
                            I   + P + +  +  ++ +    +C+  + + R T   
Sbjct: 227 -----------------IAKSEPPTLAQPSRWSSNFKDFLKKCLEKNVDARWTTSQ 265

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.7 bits (219), Expect = 2e-21
 Identities = 40/230 (17%), Positives = 84/230 (36%), Gaps = 27/230 (11%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTP-IPILVFQSVEYGTLRD--CIFGAPLPRLKIASD 73
           +         SH ++L  +G CL++   P++V   +++G LR+             +   
Sbjct: 76  LTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGF 135

Query: 74  IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR--VI 131
            +     + F   +  V R+   +N + +E+   K  DF L+  + + E     ++    
Sbjct: 136 GLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAK 195

Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNY 191
               + A E +       KS+V+SFG  L+EL+      +              +     
Sbjct: 196 LPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPY--------PDVNTFDITVYL 247

Query: 192 LEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD 241
           L+ +R       +  +  P            ++ L+C +   E RP+  +
Sbjct: 248 LQGRR------LLQPEYCP--------DPLYEVMLKCWHPKAEMRPSFSE 283

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.5 bits (219), Expect = 2e-21
 Identities = 26/145 (17%), Positives = 56/145 (38%), Gaps = 1/145 (0%)

Query: 24  AQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA-PLPRLKIASDIVNSLAYLH 82
           +++ H   +K                  + G L   I                  ++ L 
Sbjct: 63  SRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALE 122

Query: 83  FGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYI 142
           +   + I+ R+ K +NIL NE+   +  DF  +  +         +  +GT  Y +PE +
Sbjct: 123 YLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELL 182

Query: 143 SICVLNEKSNVFSFGAFLFELLAGR 167
           +     + S++++ G  +++L+AG 
Sbjct: 183 TEKSACKSSDLWALGCIIYQLVAGL 207

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 88.3 bits (218), Expect = 2e-21
 Identities = 45/233 (19%), Positives = 86/233 (36%), Gaps = 33/233 (14%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLP-----RLKIA 71
           ++  +   Q  H +++   G   ++   +++ + +E G+L   +            + + 
Sbjct: 75  LSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGML 134

Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
             I   + YL        V R+   +NIL N   V K  DF LS  + +  +  T    +
Sbjct: 135 RGIAAGMKYLAD---MNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSAL 191

Query: 132 G---TRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYL 188
           G      ++APE I        S+V+S+G  ++E+++     +  + +         + +
Sbjct: 192 GGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTN--------QDVI 243

Query: 189 KNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD 241
               +D R    P P    D P         A  QL L+C       RP    
Sbjct: 244 NAIEQDYRL---PPP---MDCP--------SALHQLMLDCWQKDRNHRPKFGQ 282

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.7 bits (217), Expect = 2e-21
 Identities = 40/237 (16%), Positives = 79/237 (33%), Gaps = 37/237 (15%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTP--IPILVFQSVEYGTLRDCIFGAPLPR------- 67
           ++ +    ++ H +I++     +        +V +  E G L   I      R       
Sbjct: 51  VSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEF 110

Query: 68  -LKIASDIVNSLAYLH--FGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH 124
            L++ + +  +L   H        ++ R+ K  N+  + +   K  DF L+  +    + 
Sbjct: 111 VLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSF 170

Query: 125 ITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFF 184
                 +GT  Y +PE ++    NEKS+++S G  L+EL A                   
Sbjct: 171 AKA--FVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPF---------TAFSQ 219

Query: 185 NEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD 241
            E      E K         I                 ++    +N     RP++ +
Sbjct: 220 KELAGKIREGKF------RRIPYRYS--------DELNEIITRMLNLKDYHRPSVEE 262

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.3 bits (218), Expect = 2e-21
 Identities = 42/235 (17%), Positives = 78/235 (33%), Gaps = 46/235 (19%)

Query: 27  SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFG-------------------APLP- 66
           +H +I+  +G C      +++ +   YG L + +                       L  
Sbjct: 85  NHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDL 144

Query: 67  --RLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH 124
              L  +  +   +A+L     +  + R+   +NIL     + K  DF L+  I     +
Sbjct: 145 EDLLSFSYQVAKGMAFLAS---KNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNY 201

Query: 125 ITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFF 184
           +          + APE I  CV   +S+V+S+G FL+EL +           +   G   
Sbjct: 202 VVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLG--------SSPYPGMPV 253

Query: 185 NEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM 239
           +                  +I +    +  E        +   C +  P  RPT 
Sbjct: 254 DSKFYK-------------MIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTF 295

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 86.7 bits (214), Expect = 8e-21
 Identities = 43/231 (18%), Positives = 91/231 (39%), Gaps = 32/231 (13%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLP------RLKI 70
           +       ++ H ++++ +G C + P   ++ + + YG L D +             L +
Sbjct: 61  LKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYM 120

Query: 71  ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRV 130
           A+ I +++ YL     +  + R+   +N L  E ++ K  DF LS  +            
Sbjct: 121 ATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHA-GA 176

Query: 131 IGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKN 190
                ++APE ++    + KS+V++FG  L+E+    +  +  +  +  +     E L+ 
Sbjct: 177 KFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVY-----ELLEK 231

Query: 191 YLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD 241
               +R  G P  +                  +L   C   +P DRP+  +
Sbjct: 232 DYRMERPEGCPEKVY-----------------ELMRACWQWNPSDRPSFAE 265

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.5 bits (213), Expect = 1e-20
 Identities = 43/240 (17%), Positives = 85/240 (35%), Gaps = 45/240 (18%)

Query: 23  AAQMSHNHILKRIGCCLQTPIPI-LVFQSVEYGTLRDCIFGAPLP--------------- 66
                H +++  +G C +   P+ ++ +  ++G L   +                     
Sbjct: 71  IHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDF 130

Query: 67  -----RLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEG 121
                 +  +  +   + +L     R  + R+   +NIL +E+NV K  DF L+  I + 
Sbjct: 131 LTLEHLICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSEKNVVKICDFGLARDIYKD 187

Query: 122 ETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHG 181
             ++          + APE I   V   +S+V+SFG  L+E+ +     +         G
Sbjct: 188 PDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPY--------PG 239

Query: 182 CFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD 241
              +E     L++      P      ++             Q  L+C +  P  RPT  +
Sbjct: 240 VKIDEEFCRRLKEGTRMRAP-DYTTPEM------------YQTMLDCWHGEPSQRPTFSE 286

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.0 bits (212), Expect = 1e-20
 Identities = 42/229 (18%), Positives = 81/229 (35%), Gaps = 31/229 (13%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLP-----RLKIA 71
           I  +     + H ++++  G    TP   +V +    G+L D +             + A
Sbjct: 59  IREVNAMHSLDHRNLIRLYGVV-LTPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYA 117

Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHIT-TDRV 130
             +   + YL     +  + R+   +N+L    ++ K  DF L  ++P+ + H    +  
Sbjct: 118 VQVAEGMGYLES---KRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHR 174

Query: 131 IGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKN 190
                + APE +     +  S+ + FG  L+E+       W  L  +       ++  K 
Sbjct: 175 KVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQ----ILHKIDKE 230

Query: 191 YLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM 239
                R    P  I                   + ++C  + PEDRPT 
Sbjct: 231 GERLPRPEDCPQDIY-----------------NVMVQCWAHKPEDRPTF 262

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.7 bits (211), Expect = 2e-20
 Identities = 41/239 (17%), Positives = 93/239 (38%), Gaps = 39/239 (16%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIF-----------GAPL 65
           +N  +   + + +H+++ +G   Q    +++ + +  G L+  +             AP 
Sbjct: 71  LNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPP 130

Query: 66  P---RLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGE 122
                +++A +I + +AYL+       V R+   +N +  E+   K  DF ++  I E +
Sbjct: 131 SLSKMIQMAGEIADGMAYLNA---NKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETD 187

Query: 123 THITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGC 182
            +    + +    + +PE +   V    S+V+SFG  L+E+       +  L +      
Sbjct: 188 YYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSN------ 241

Query: 183 FFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD 241
              + L+  +E              + P            +L   C   +P+ RP+ ++
Sbjct: 242 --EQVLRFVMEGGL------LDKPDNCP--------DMLFELMRMCWQYNPKMRPSFLE 284

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.1 bits (207), Expect = 6e-20
 Identities = 48/228 (21%), Positives = 84/228 (36%), Gaps = 25/228 (10%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFG--APLPRLKIASDI 74
           +       Q SH++I++  G   +    +++ + +E G L   +         L++   +
Sbjct: 57  LGEAGIMGQFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGML 116

Query: 75  VNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHI-TTDRVIGT 133
               A + +      V R+   +NIL N   V K  DF LS  + +      TT      
Sbjct: 117 RGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIP 176

Query: 134 RGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLE 193
             ++APE IS       S+V+SFG  ++E++      +  L +        +E +K   +
Sbjct: 177 IRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSN--------HEVMKAIND 228

Query: 194 DKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD 241
             R           D P         A  QL ++C       RP   D
Sbjct: 229 GFR------LPTPMDCP--------SAIYQLMMQCWQQERARRPKFAD 262

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.3 bits (205), Expect = 1e-19
 Identities = 45/230 (19%), Positives = 82/230 (35%), Gaps = 32/230 (13%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLP-----RLKIA 71
           +       Q  H HI+K IG   + P+ I + +    G LR  +            +  A
Sbjct: 56  LQEALTMRQFDHPHIVKLIGVITENPVWI-IMELCTLGELRSFLQVRKYSLDLASLILYA 114

Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVI 131
             +  +LAYL     +  V R+   +N+L +  +  K  DF LS  + +   +  + +  
Sbjct: 115 YQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKAS-KGK 170

Query: 132 GTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNY 191
               + APE I+       S+V+ FG  ++E+L   +  +         G   N+ +   
Sbjct: 171 LPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPF--------QGVKNNDVIGRI 222

Query: 192 LEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD 241
              +R        +  + P             L  +C    P  RP   +
Sbjct: 223 ENGER------LPMPPNCP--------PTLYSLMTKCWAYDPSRRPRFTE 258

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.1 bits (205), Expect = 1e-19
 Identities = 38/231 (16%), Positives = 74/231 (32%), Gaps = 36/231 (15%)

Query: 20  ITYAAQMSHNHILKRIGCCLQT----PIPILVFQSVEYGTLRDCIF-GAPLP---RLKIA 71
                 + H +I++       T       +LV + +  GTL+  +     +         
Sbjct: 59  AEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRFKVMKIKVLRSWC 118

Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEEN-VAKWFDFLLSISIPEGETHITTDRV 130
             I+  L +LH   P PI+ R+ K  NI         K  D  L+              V
Sbjct: 119 RQILKGLQFLHTRTP-PIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAK----AV 173

Query: 131 IGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKN 190
           IGT  + APE       +E  +V++FG  + E+                   +       
Sbjct: 174 IGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATSEYP-------------YSECQNAA 219

Query: 191 YLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD 241
            +  +  +G+      +               ++   C+  + ++R ++ D
Sbjct: 220 QIYRRVTSGVKPASFDKVAI--------PEVKEIIEGCIRQNKDERYSIKD 262

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.4 bits (205), Expect = 1e-19
 Identities = 46/233 (19%), Positives = 79/233 (33%), Gaps = 45/233 (19%)

Query: 27  SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLP-------------------- 66
            H +I+  +G C Q     ++ +    G LR+ +     P                    
Sbjct: 77  KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKD 136

Query: 67  RLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHIT 126
            +  A  +   + YL     +  + R+   +N+L  E+NV K  DF L+  I   + +  
Sbjct: 137 LVSCAYQVARGMEYLA---SKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKK 193

Query: 127 TDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNE 186
           T        + APE +   +   +S+V+SFG  L+E+       +         G    E
Sbjct: 194 TTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYP--------GVPVEE 245

Query: 187 YLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM 239
             K   E  R           D P        +    +  +C +  P  RPT 
Sbjct: 246 LFKLLKEGHRM----------DKP----SNCTNELYMMMRDCWHAVPSQRPTF 284

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.8 bits (201), Expect = 6e-19
 Identities = 44/232 (18%), Positives = 79/232 (34%), Gaps = 48/232 (20%)

Query: 28  HNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLP--------------------R 67
           H +I+  +G C       L  +   +G L D +  + +                      
Sbjct: 70  HPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQL 129

Query: 68  LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITT 127
           L  A+D+   + YL     +  + R+   +NIL  E  VAK  DF LS      E ++  
Sbjct: 130 LHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVAKIADFGLSRGQ---EVYVKK 183

Query: 128 DRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEY 187
                   + A E ++  V    S+V+S+G  L+E+++     +  +           E 
Sbjct: 184 TMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC--------AEL 235

Query: 188 LKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM 239
            +   +  R      P+   D               L  +C    P +RP+ 
Sbjct: 236 YEKLPQGYRL---EKPLNCDD-----------EVYDLMRQCWREKPYERPSF 273

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 80.9 bits (199), Expect = 2e-18
 Identities = 36/230 (15%), Positives = 78/230 (33%), Gaps = 35/230 (15%)

Query: 20  ITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLP-----RLKIASDI 74
           I   + + H  ++            +++++ +  G L + +            ++    +
Sbjct: 74  IQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQV 133

Query: 75  VNSLAYLHFGFPRPIVLRNFKTQNILFN--EENVAKWFDFLLSISIPEGETHITTDRVIG 132
              L ++H       V  + K +NI+F     N  K  DF L+  +   ++   T    G
Sbjct: 134 CKGLCHMHE---NNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVT---TG 187

Query: 133 TRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNY- 191
           T  ++APE      +   ++++S G   + LL+G           +D     N    ++ 
Sbjct: 188 TAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLS----PFGGENDDETLRNVKSCDWN 243

Query: 192 LEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD 241
           ++D  F+GI                          + +   P  R T+  
Sbjct: 244 MDDSAFSGISEDGK-----------------DFIRKLLLADPNTRMTIHQ 276

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 77.4 bits (190), Expect = 3e-17
 Identities = 30/158 (18%), Positives = 60/158 (37%), Gaps = 13/158 (8%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIF--GAPLP---RLKIA 71
            N I+   Q+ H  ++            +L+ + +  G L D I      +     +   
Sbjct: 74  KNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYM 133

Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILF--NEENVAKWFDFLLSISIPEGETHITTDR 129
                 L ++H      IV  + K +NI+    + +  K  DF L+  +   E    T  
Sbjct: 134 RQACEGLKHMHE---HSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVT-- 188

Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
              T  ++APE +    +   +++++ G   + LL+G 
Sbjct: 189 -TATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGL 225

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 76.3 bits (187), Expect = 4e-17
 Identities = 43/157 (27%), Positives = 73/157 (46%), Gaps = 6/157 (3%)

Query: 17  INNITYAAQMSHNHILKRIGCCL----QTPIPILVFQSVEYGTLRDCIFGA-PLPRLKIA 71
                 AA ++H  I+             P+P +V + V+  TLRD +    P+   +  
Sbjct: 55  RREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAI 114

Query: 72  SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHIT-TDRV 130
             I ++   L+F     I+ R+ K  NI+ +  N  K  DF ++ +I +    +T T  V
Sbjct: 115 EVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAV 174

Query: 131 IGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           IGT  Y +PE      ++ +S+V+S G  L+E+L G 
Sbjct: 175 IGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGE 211

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 76.0 bits (186), Expect = 6e-17
 Identities = 33/229 (14%), Positives = 67/229 (29%), Gaps = 32/229 (13%)

Query: 24  AQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIF--GAPLP---RLKIASDIVNSL 78
             M     +  I  C       ++   +   +L D              L +A  +++ +
Sbjct: 57  KMMQGGVGIPTIRWCGAEGDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRI 116

Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEE---NVAKWFDFLLSISIPEGETH-----ITTDRV 130
            Y+H    +  + R+ K  N L       N+    DF L+    +  TH          +
Sbjct: 117 EYIHS---KNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNL 173

Query: 131 IGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKN 190
            GT  Y++         + + ++ S G  L     G +                 +  K 
Sbjct: 174 TGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLP--------WQGLKAATKRQKY 225

Query: 191 YLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM 239
               ++    P  ++ +  P           A     C +   +D+P  
Sbjct: 226 ERISEKKMSTPIEVLCKGYP--------SEFATYLNFCRSLRFDDKPDY 266

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.9 bits (183), Expect = 2e-16
 Identities = 39/238 (16%), Positives = 74/238 (31%), Gaps = 19/238 (7%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIP-----ILVFQSVEYGTLR--DCIFGAPLP--- 66
           +  + +     H ++++    C  +         LVF+ V+       D +    +P   
Sbjct: 58  VAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTET 117

Query: 67  RLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHIT 126
              +   ++  L +LH      +V R+ K QNIL       K  DF L+          +
Sbjct: 118 IKDMMFQLLRGLDFLHS---HRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTS 174

Query: 127 TDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNE 186
              V+ T  Y APE +         +++S G    E+   +                   
Sbjct: 175 ---VVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVI 231

Query: 187 YLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQ---LTLECVNNSPEDRPTMVD 241
            L    +  R   +P            ++           L L+C+  +P  R +   
Sbjct: 232 GLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYS 289

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (182), Expect = 2e-16
 Identities = 45/237 (18%), Positives = 76/237 (32%), Gaps = 24/237 (10%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDIVN 76
           +  I    ++SH +I+  +          LVF  +E          + +         + 
Sbjct: 48  LREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFMETDLEVIIKDNSLVLTPSHIKAYML 107

Query: 77  SLA-YLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRG 135
                L +     I+ R+ K  N+L +E  V K  DF   ++   G  +      + TR 
Sbjct: 108 MTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADF--GLAKSFGSPNRAYTHQVVTRW 165

Query: 136 YSAPEYISIC-VLNEKSNVFSFGAFLFELLAGR------------IHIWDLLKDTHDHGC 182
           Y APE +    +     ++++ G  L ELL                 I++ L    +   
Sbjct: 166 YRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQW 225

Query: 183 FFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM 239
                L +Y+  K F GIP   I                  L       +P  R T 
Sbjct: 226 PDMCSLPDYVTFKSFPGIPLHHIFSAAG--------DDLLDLIQGLFLFNPCARITA 274

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.8 bits (183), Expect = 2e-16
 Identities = 35/146 (23%), Positives = 54/146 (36%), Gaps = 3/146 (2%)

Query: 23  AAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDIVNSLA-YL 81
           +    H  +               V + +  G L   I       L  A+     +   L
Sbjct: 57  SLAWEHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGL 116

Query: 82  HFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEY 141
            F   + IV R+ K  NIL +++   K  DF +      G+    T    GT  Y APE 
Sbjct: 117 QFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNT--FCGTPDYIAPEI 174

Query: 142 ISICVLNEKSNVFSFGAFLFELLAGR 167
           +     N   + +SFG  L+E+L G+
Sbjct: 175 LLGQKYNHSVDWWSFGVLLYEMLIGQ 200

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.4 bits (182), Expect = 2e-16
 Identities = 42/227 (18%), Positives = 79/227 (34%), Gaps = 28/227 (12%)

Query: 20  ITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIF-GAPLPRLKIASDIVNSL 78
           ++   ++ H +++            IL+ + V  G L D +     L   +    +   L
Sbjct: 64  VSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQIL 123

Query: 79  AYLHFGFPRPIVLRNFKTQNILFNEENVA----KWFDFLLSISIPEGETHITTDRVIGTR 134
             +++     I   + K +NI+  + NV     K  DF L+  I  G        + GT 
Sbjct: 124 NGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNE---FKNIFGTP 180

Query: 135 GYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLED 194
            + APE ++   L  +++++S G   + LL+G         DT          +    ED
Sbjct: 181 EFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLG---DTKQETLANVSAVNYEFED 237

Query: 195 KRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD 241
           + F+   A                          +   P+ R T+ D
Sbjct: 238 EYFSNTSALAK-----------------DFIRRLLVKDPKKRMTIQD 267

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 73.5 bits (180), Expect = 4e-16
 Identities = 37/171 (21%), Positives = 62/171 (36%), Gaps = 7/171 (4%)

Query: 1   MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI 60
           +K    +      GS  N I    ++ H +I+             L+ Q V  G L D I
Sbjct: 39  IKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRI 98

Query: 61  F-GAPLP---RLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSI 116
                       ++   +++++ YLH        L+         +E++     DF LS 
Sbjct: 99  VEKGFYTERDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSK 158

Query: 117 SIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
               G    T     GT GY APE ++    ++  + +S G   + LL G 
Sbjct: 159 MEDPGSVLST---ACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGY 206

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.2 bits (179), Expect = 8e-16
 Identities = 25/155 (16%), Positives = 58/155 (37%), Gaps = 13/155 (8%)

Query: 20  ITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLP-----RLKIASDI 74
           I+      H +IL            +++F+ +    + + I  +         +     +
Sbjct: 52  ISILNIARHRNILHLHESFESMEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQV 111

Query: 75  VNSLAYLHFGFPRPIVLRNFKTQNILF--NEENVAKWFDFLLSISIPEGETHITTDRVIG 132
             +L +LH      I   + + +NI++     +  K  +F  +  +  G+          
Sbjct: 112 CEALQFLHS---HNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLF---T 165

Query: 133 TRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
              Y APE     V++  ++++S G  ++ LL+G 
Sbjct: 166 APEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGI 200

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.2 bits (179), Expect = 9e-16
 Identities = 42/228 (18%), Positives = 72/228 (31%), Gaps = 33/228 (14%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIF----GAPLPRLKIAS 72
              ++  +      I+              +   +  G L   +      +       A+
Sbjct: 55  RIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAA 114

Query: 73  DIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIG 132
           +I+  L ++H    R +V R+ K  NIL +E    +  D  L+    + + H +    +G
Sbjct: 115 EIILGLEHMHN---RFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHAS----VG 167

Query: 133 TRGYSAPEYISICV-LNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNY 191
           T GY APE +   V  +  ++ FS G  LF+LL G                F     K+ 
Sbjct: 168 THGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHS-------------PFRQHKTKDK 214

Query: 192 LEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM 239
            E  R T   A  +                  L    +      R   
Sbjct: 215 HEIDRMTLTMAVELPDSFS--------PELRSLLEGLLQRDVNRRLGC 254

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 70.5 bits (172), Expect = 5e-15
 Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 16/151 (10%)

Query: 27  SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIF-GAPLP---RLKIASDIVNSLAYLH 82
            H +I++            LVF  ++ G L D +     L      KI   ++  +  LH
Sbjct: 68  GHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALH 127

Query: 83  FGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYI 142
                 IV R+ K +NIL +++   K  DF  S  +  GE       V GT  Y APE I
Sbjct: 128 ---KLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGE---KLREVCGTPSYLAPEII 181

Query: 143 SICVL------NEKSNVFSFGAFLFELLAGR 167
              +        ++ +++S G  ++ LLAG 
Sbjct: 182 ECSMNDNHPGYGKEVDMWSTGVIMYTLLAGS 212

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (169), Expect = 2e-14
 Identities = 40/238 (16%), Positives = 80/238 (33%), Gaps = 13/238 (5%)

Query: 17  INNITYAAQMSHNHILKRIGCC----LQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIAS 72
           +  I    +  H +I+          ++    + +   +    L   +    L    I  
Sbjct: 54  LREIKILLRFRHENIIGINDIIRAPTIEQMKDVYLVTHLMGADLYKLLKTQHLSNDHICY 113

Query: 73  DIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLS-ISIPEGETHITTDRVI 131
            +   L  L +     ++ R+ K  N+L N     K  DF L+ ++ P+ +        +
Sbjct: 114 FLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYV 173

Query: 132 GTRGYSAPEYISI-CVLNEKSNVFSFGAFLFELLAGRI------HIWDLLKDTHDHGCFF 184
            TR Y APE +       +  +++S G  L E+L+ R       ++  L       G   
Sbjct: 174 ATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPS 233

Query: 185 NEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQ-LTLECVNNSPEDRPTMVD 241
            E L   +  K    + +      +P         + A  L  + +  +P  R  +  
Sbjct: 234 QEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQ 291

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.4 bits (169), Expect = 2e-14
 Identities = 39/229 (17%), Positives = 78/229 (34%), Gaps = 35/229 (15%)

Query: 26  MSHNHILKRIGCC----LQTPIPILVFQSVEYGTLRDCIFGAPLPRL------KIASDIV 75
               HI++ +             ++V + ++ G L   I              +I   I 
Sbjct: 62  SQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIG 121

Query: 76  NSLAYLHFGFPRPIVLRNFKTQNILFNEEN---VAKWFDFLLSISIPEGETHITTDRVIG 132
            ++ YLH      I  R+ K +N+L+  +    + K  DF  +       +  T      
Sbjct: 122 EAIQYLHS---INIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCY--- 175

Query: 133 TRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYL 192
           T  Y APE +     ++  +++S G  ++ LL G    +       +HG   +  +K  +
Sbjct: 176 TPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYS------NHGLAISPGMKTRI 229

Query: 193 EDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD 241
              ++          + P  E  +       L    +   P  R T+ +
Sbjct: 230 RMGQY----------EFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITE 268

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.6 bits (167), Expect = 3e-14
 Identities = 34/150 (22%), Positives = 65/150 (43%), Gaps = 6/150 (4%)

Query: 24  AQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDIVNSLA-YLH 82
           + ++H  I++  G         ++   +E G L   +  +      +A      +   L 
Sbjct: 59  SIVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALE 118

Query: 83  FGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYI 142
           +   + I+ R+ K +NIL ++    K  DF  +  +P+         + GT  Y APE +
Sbjct: 119 YLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTY-----TLCGTPDYIAPEVV 173

Query: 143 SICVLNEKSNVFSFGAFLFELLAGRIHIWD 172
           S    N+  + +SFG  ++E+LAG    +D
Sbjct: 174 STKPYNKSIDWWSFGILIYEMLAGYTPFYD 203

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.4 bits (166), Expect = 3e-14
 Identities = 35/234 (14%), Positives = 76/234 (32%), Gaps = 12/234 (5%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDIVN 76
           +  I    ++ H +I++            LVF+  +    +           +I    + 
Sbjct: 49  LREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEIVKSFLF 108

Query: 77  SLA-YLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRG 135
            L   L F   R ++ R+ K QN+L N     K  +F L+ +         +  V+    
Sbjct: 109 QLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRC-YSAEVVTLWY 167

Query: 136 YSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWD-------LLKDTHDHGCFFNEYL 188
                     + +   +++S G    EL      ++        L +     G    E  
Sbjct: 168 RPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQW 227

Query: 189 KNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQ-LTLECVNNSPEDRPTMVD 241
            +  +   +   P P+       +    +L+A+ + L    +  +P  R +  +
Sbjct: 228 PSMTKLPDY--KPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEE 279

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 67.5 bits (164), Expect = 6e-14
 Identities = 29/227 (12%), Positives = 58/227 (25%), Gaps = 33/227 (14%)

Query: 27  SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLP----RLKIASDIVNSLAYLH 82
               I        +    +LV   +                       A  ++  +  +H
Sbjct: 59  GCTGIPNVYYFGQEGLHNVLVIDLLGPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIH 118

Query: 83  FGFPRPIVLRNFKTQNILFNE-----ENVAKWFDFLLSISIPEGETHITTDR-----VIG 132
               + +V R+ K  N L         N+    DF +     +  T           + G
Sbjct: 119 E---KSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSG 175

Query: 133 TRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYL 192
           T  Y +         + + ++ + G      L G +    L   T+       +  +   
Sbjct: 176 TARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNK------QKYERIG 229

Query: 193 EDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM 239
           E K+ T  P   +    P            +      N + +  P  
Sbjct: 230 EKKQST--PLRELCAGFP--------EEFYKYMHYARNLAFDATPDY 266

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 66.4 bits (161), Expect = 1e-13
 Identities = 40/233 (17%), Positives = 84/233 (36%), Gaps = 11/233 (4%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIF-GAPLPRLKIASDIV 75
           I  I+   ++ H++I+K           +LVF+ ++    +        L  +   S ++
Sbjct: 48  IREISILKELKHSNIVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLL 107

Query: 76  NSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRG 135
             L  + +   R ++ R+ K QN+L N E   K  DF L+ +        T   ++    
Sbjct: 108 QLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTH-EIVTLWY 166

Query: 136 YSAPEYISICVLNEKSNVFSFGAFLFELLAGRI------HIWDLLKDTHDHGCFFNEYLK 189
            +    +     +   +++S G    E++ G            L++     G   ++   
Sbjct: 167 RAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWP 226

Query: 190 NYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQ-LTLECVNNSPEDRPTMVD 241
           N  E  ++   P   + + +P     + L  S   L  + +   P  R T   
Sbjct: 227 NVTELPKY--DPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQ 277

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (160), Expect = 2e-13
 Identities = 25/157 (15%), Positives = 51/157 (32%), Gaps = 3/157 (1%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIF-GAPLPRLKIASDIV 75
           +          H  +               V +    G L   +         +      
Sbjct: 53  VTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGA 112

Query: 76  NSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRG 135
             ++ L +   R +V R+ K +N++ +++   K  DF L           T     GT  
Sbjct: 113 EIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGA--TMKTFCGTPE 170

Query: 136 YSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWD 172
           Y APE +         + +  G  ++E++ GR+  ++
Sbjct: 171 YLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYN 207

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.5 bits (156), Expect = 8e-13
 Identities = 39/245 (15%), Positives = 71/245 (28%), Gaps = 20/245 (8%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPI--------LVFQSVEYGTLRDCIF-GAPLPR 67
           +  I     + H +++  I  C     P         LVF   E+               
Sbjct: 57  LREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTL 116

Query: 68  LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLS--ISIPEGETHI 125
            +I   +   L  L++     I+ R+ K  N+L   + V K  DF L+   S+ +     
Sbjct: 117 SEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPN 176

Query: 126 TTDRVIGTRGYSAPEYI-SICVLNEKSNVFSFGAFLFELLAGRI------HIWDLLKDTH 178
                + T  Y  PE +          +++  G  + E+               L   + 
Sbjct: 177 RYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQ 236

Query: 179 DHGCFFNEYLKNYLEDKRFTGIPAPIIV-QDIPCIEKEQQLHASAQ-LTLECVNNSPEDR 236
             G    E   N    + +  +       + +    K       A  L  + +   P  R
Sbjct: 237 LCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQR 296

Query: 237 PTMVD 241
               D
Sbjct: 297 IDSDD 301

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (153), Expect = 2e-12
 Identities = 40/233 (17%), Positives = 74/233 (31%), Gaps = 10/233 (4%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLR--DCIFGAPLPRLKIASDI 74
           I  I+   +++H +I+K +          LVF+ +     +  D      +P   I S +
Sbjct: 49  IREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYL 108

Query: 75  VNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTR 134
              L  L F     ++ R+ K QN+L N E   K  DF L+ +        T   V+   
Sbjct: 109 FQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTH-EVVTLW 167

Query: 135 GYSAPEYISICVLNEKSNVFSFGAFLFELLAGRI------HIWDLLKDTHDHGCFFNEYL 188
             +    +     +   +++S G    E++  R        I  L +     G       
Sbjct: 168 YRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVW 227

Query: 189 KNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD 241
                   +         QD   +           L  + ++  P  R +   
Sbjct: 228 PGVTSMPDYKPSFPKWARQDFSKVVPPLDEDG-RSLLSQMLHYDPNKRISAKA 279

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.7 bits (149), Expect = 8e-12
 Identities = 47/243 (19%), Positives = 83/243 (34%), Gaps = 28/243 (11%)

Query: 20  ITYAAQMSHNHILKRIGCCLQT------PIPILVFQSVEYGTLRDCIF----GAPLP--- 66
           +    ++ H +I++       +          LV   V     R           LP   
Sbjct: 64  LQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIY 123

Query: 67  RLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEEN-VAKWFDFLLSISIPEGETHI 125
                  +  SLAY+H      I  R+ K QN+L + +  V K  DF  +  +  GE ++
Sbjct: 124 VKLYMYQLFRSLAYIH---SFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNV 180

Query: 126 TTDRVIGTRGYSAP-EYISICVLNEKSNVFSFGAFLFELLAGRI------HIWDLLKDTH 178
           +    I +R Y AP             +V+S G  L ELL G+        +  L++   
Sbjct: 181 SY---ICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIK 237

Query: 179 DHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT 238
             G    E ++    +      P  I       + + +    +  L    +  +P  R T
Sbjct: 238 VLGTPTREQIREMNPNYTEFKFP-QIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLT 296

Query: 239 MVD 241
            ++
Sbjct: 297 PLE 299

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.9 bits (142), Expect = 5e-11
 Identities = 24/147 (16%), Positives = 52/147 (35%), Gaps = 14/147 (9%)

Query: 28  HNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLP-----RLKIASDIVNSLAYLH 82
            + +++ +    +    +L+ +  E                          ++ ++ + H
Sbjct: 68  FSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCH 127

Query: 83  FGFPRPIVLRNFKTQNILFNEEN-VAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEY 141
                 ++ R+ K +NIL +      K  DF     + +           GTR YS PE+
Sbjct: 128 N---CGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYT----DFDGTRVYSPPEW 180

Query: 142 ISIC-VLNEKSNVFSFGAFLFELLAGR 167
           I         + V+S G  L++++ G 
Sbjct: 181 IRYHRYHGRSAAVWSLGILLYDMVCGD 207

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (138), Expect = 2e-10
 Identities = 39/248 (15%), Positives = 84/248 (33%), Gaps = 31/248 (12%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPI------PILVFQSVEYGTLRDCIFGAPLPRLK- 69
              +     ++H +I+  +                LV + ++    +         R+  
Sbjct: 64  YRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSY 123

Query: 70  IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDR 129
           +   ++  + +LH      I+ R+ K  NI+   +   K  DF L+ +            
Sbjct: 124 LLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFM---MTP 177

Query: 130 VIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRI-------------HIWDLLKD 176
            + TR Y APE I      E  +++S G  + E++  +I              I  L   
Sbjct: 178 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTP 237

Query: 177 THDHGCFFNEYLKNYLEDK-RFTGIPAPIIVQDIPCIEKEQQLHASAQLTLE----CVNN 231
             +        ++NY+E++ ++ G+  P +  D       +     A    +     +  
Sbjct: 238 CPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVI 297

Query: 232 SPEDRPTM 239
            P  R ++
Sbjct: 298 DPAKRISV 305

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (130), Expect = 2e-09
 Identities = 32/240 (13%), Positives = 69/240 (28%), Gaps = 22/240 (9%)

Query: 17  INNITYAAQMSHNHILKRIGCC-----LQTPIPILVFQSVEYGTLRDCIFGAPLP---RL 68
              +     M H +++  +        L       +        L   +    L      
Sbjct: 65  YRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMKHEKLGEDRIQ 124

Query: 69  KIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTD 128
            +   ++  L Y+H      I+ R+ K  N+  NE+   K  DF L+           T 
Sbjct: 125 FLVYQMLKGLRYIH---AAGIIHRDLKPGNLAVNEDCELKILDFGLARQADSE----MTG 177

Query: 129 RVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYL 188
            V+     +    ++     +  +++S G  + E++ G+                     
Sbjct: 178 YVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGT 237

Query: 189 KNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLE-------CVNNSPEDRPTMVD 241
                 +R     A   ++ +P +EK+         +          +    E R T  +
Sbjct: 238 PPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGE 297

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.0 bits (129), Expect = 3e-09
 Identities = 28/155 (18%), Positives = 58/155 (37%), Gaps = 12/155 (7%)

Query: 17  INNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIF-GAPLP---RLKIAS 72
           +N       ++   ++K            +V + V  G +   +              A+
Sbjct: 89  LNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAA 148

Query: 73  DIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIG 132
            IV +  YLH      ++ R+ K +N+L +++   +  DF  +  +           + G
Sbjct: 149 QIVLTFEYLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWT-----LCG 200

Query: 133 TRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
           T    APE I     N+  + ++ G  ++E+ AG 
Sbjct: 201 TPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGY 235

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (124), Expect = 1e-08
 Identities = 28/143 (19%), Positives = 49/143 (34%), Gaps = 4/143 (2%)

Query: 28  HNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIF-GAPLPRLKIASDIVNSLAYLHFGFP 86
              ++             L+   +  G L   +         ++   +   +  L     
Sbjct: 88  SPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLHK 147

Query: 87  RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICV 146
             I+ R+ K +NIL +        DF LS      ET    D   GT  Y AP+ +    
Sbjct: 148 LGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDF-CGTIEYMAPDIVRGGD 206

Query: 147 --LNEKSNVFSFGAFLFELLAGR 167
              ++  + +S G  ++ELL G 
Sbjct: 207 SGHDKAVDWWSLGVLMYELLTGA 229

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.0 bits (118), Expect = 6e-08
 Identities = 31/159 (19%), Positives = 56/159 (35%), Gaps = 12/159 (7%)

Query: 19  NITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIF--------GAPLPRLK- 69
           + T    M  NHILK +          +    V      + +         G PL  +K 
Sbjct: 70  DNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQ 129

Query: 70  IASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEEN-VAKWFDFLLSISIPEGETHITTD 128
           I+  ++  L Y+H      I+  + K +N+L    +         ++             
Sbjct: 130 ISKQLLLGLDYMHRR--CGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYT 187

Query: 129 RVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR 167
             I TR Y +PE +        ++++S    +FEL+ G 
Sbjct: 188 NSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGD 226

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	241
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	100.0
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	100.0
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	100.0
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	100.0
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	100.0
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	100.0
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	100.0
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	100.0
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.98
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.68
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	98.07
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	97.66
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	96.28
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	95.62
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	94.08
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	85.5

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-51  Score=321.43  Aligned_cols=217  Identities=22%  Similarity=0.251  Sum_probs=166.5

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVN   76 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~   76 (241)
                      ||++..+...+..+++.+|++++++++|||||++++++..++..++|||||++|+|.+++.....    ....++.|++.
T Consensus        35 iK~i~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~ivmEy~~gg~L~~~l~~~~~l~e~~~~~i~~qi~~  114 (271)
T d1nvra_          35 VKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMA  114 (271)
T ss_dssp             EEEEECC-------CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTEEGGGGSBTTTBCCHHHHHHHHHHHHH
T ss_pred             EEEEehhhcchHHHHHHHHHHHHHhCCCCCEeeEeeeeccCceeEEEEeccCCCcHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence            46665544445567799999999999999999999999999999999999999999999976532    46789999999


Q ss_pred             HhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCC-CcchhhHH
Q 044022           77 SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVL-NEKSNVFS  155 (241)
Q Consensus        77 ~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~-~~~~Di~s  155 (241)
                      ||.|||   +++|+||||||+|||++.++.+||+|||++...............+||+.|+|||++.+..+ +.++||||
T Consensus       115 al~ylH---~~~IiHrDiKp~NILl~~~~~~KL~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~~~DiwS  191 (271)
T d1nvra_         115 GVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWS  191 (271)
T ss_dssp             HHHHHH---HTTEECSCCCGGGEEECTTCCEEECCCTTCEECEETTEECCBCCCCSCGGGSCTHHHHCSSBCHHHHHHHH
T ss_pred             HHHHHH---HcCCccCcccHHHEEECCCCCEEEccchhheeeccCCccccccceeeCcCccCHhHhcCCCCCCCceeeeH
Confidence            999999   89999999999999999999999999999987654433333345689999999999988776 57899999


Q ss_pred             HHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCC
Q 044022          156 FGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPED  235 (241)
Q Consensus       156 ~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~  235 (241)
                      +||++|+|++|+.||.......       .. ...........    +. ..        ..++.+.+|+.+||+.||++
T Consensus       192 lGvilyeml~G~~pf~~~~~~~-------~~-~~~~~~~~~~~----~~-~~--------~~s~~~~~li~~~L~~dP~~  250 (271)
T d1nvra_         192 CGIVLTAMLAGELPWDQPSDSC-------QE-YSDWKEKKTYL----NP-WK--------KIDSAPLALLHKILVENPSA  250 (271)
T ss_dssp             HHHHHHHHHHSSCSCSSSSTTS-------HH-HHHHHTTCTTS----TT-GG--------GSCHHHHHHHHHHSCSSTTT
T ss_pred             hHHHHHHHHhCCCCCCCCChHH-------HH-HHHHhcCCCCC----Cc-cc--------cCCHHHHHHHHHHcCCChhH
Confidence            9999999999999996522111       11 11111111100    00 01        12356789999999999999


Q ss_pred             CCCCCC
Q 044022          236 RPTMVD  241 (241)
Q Consensus       236 Rpt~~e  241 (241)
                      |||++|
T Consensus       251 R~t~~e  256 (271)
T d1nvra_         251 RITIPD  256 (271)
T ss_dssp             SCCHHH
T ss_pred             CcCHHH
Confidence            999854

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.9e-50  Score=316.47  Aligned_cols=219  Identities=21%  Similarity=0.301  Sum_probs=162.2

Q ss_pred             Cccccccc-ccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC--c---hHHHHHHHH
Q 044022            1 MKFYGHEY-HRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP--L---PRLKIASDI   74 (241)
Q Consensus         1 iK~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~--~---~~~~~~~~i   74 (241)
                      ||++.... .....+.|.+|++++++++|||||++++++.. +..++|||||++|+|.+++....  .   .++.++.||
T Consensus        35 vK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~-~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi  113 (276)
T d1uwha_          35 VKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTA-PQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQT  113 (276)
T ss_dssp             EEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEECCCEEEHHHHHHTSCCCCCHHHHHHHHHHH
T ss_pred             EEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEec-cEEEEEEecCCCCCHHHHHhhccCCCCHHHHHHHHHHH
Confidence            46654332 34567889999999999999999999998754 56899999999999999986432  1   468899999


Q ss_pred             HHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc---cCCCcch
Q 044022           75 VNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI---CVLNEKS  151 (241)
Q Consensus        75 ~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~---~~~~~~~  151 (241)
                      +.||+|||   +++|+||||||+|||++.++.+||+|||++................||+.|+|||++.+   ..++.++
T Consensus       114 ~~gl~yLH---~~~ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~~~~s  190 (276)
T d1uwha_         114 AQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQS  190 (276)
T ss_dssp             HHHHHHHH---HTTCCCSCCCGGGEEEETTSSEEECCCCCSCC------------CCCCGGGCCHHHHTTCSSCCCCHHH
T ss_pred             HHHHHHHh---cCCEeccccCHHHEEEcCCCCEEEccccceeeccccCCcccccccccCcccCCHHHHhcccCCCCCchh
Confidence            99999999   89999999999999999999999999999976654433333345679999999999864   3578999


Q ss_pred             hhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccC
Q 044022          152 NVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNN  231 (241)
Q Consensus       152 Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~  231 (241)
                      ||||||+++|||++|+.||.....         ..........+..... ......        ..++.+.+|+.+||+.
T Consensus       191 DiwS~Gv~l~el~tg~~Pf~~~~~---------~~~~~~~~~~~~~~p~-~~~~~~--------~~~~~l~~li~~cl~~  252 (276)
T d1uwha_         191 DVYAFGIVLYELMTGQLPYSNINN---------RDQIIFMVGRGYLSPD-LSKVRS--------NCPKAMKRLMAECLKK  252 (276)
T ss_dssp             HHHHHHHHHHHHHHSSCTTTTCCC---------HHHHHHHHHHTSCCCC-GGGSCT--------TCCHHHHHHHHHHTCS
T ss_pred             hhhhhHHHHHHHHHCCCCCCCCCh---------HHHHHHHHhcCCCCCc-chhccc--------cchHHHHHHHHHHcCC
Confidence            999999999999999999965211         1112222222211110 011112        2236789999999999


Q ss_pred             CCCCCCCCCC
Q 044022          232 SPEDRPTMVD  241 (241)
Q Consensus       232 ~p~~Rpt~~e  241 (241)
                      ||++|||++|
T Consensus       253 dp~~RPt~~~  262 (276)
T d1uwha_         253 KRDERPLFPQ  262 (276)
T ss_dssp             SGGGSCCHHH
T ss_pred             CHhHCcCHHH
Confidence            9999999853

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.1e-49  Score=313.62  Aligned_cols=214  Identities=16%  Similarity=0.236  Sum_probs=170.7

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc---hHHHHHHHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL---PRLKIASDIVNS   77 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~i~~~   77 (241)
                      ||++.... ....+.+.+|++++++++|||||++++++..++..|+|||||++|+|.+++.....   ....++.||+.|
T Consensus        50 vK~~~~~~-~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmEy~~gg~L~~~~~~~~l~~~~~~~i~~qi~~a  128 (293)
T d1yhwa1          50 IRQMNLQQ-QPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQA  128 (293)
T ss_dssp             EEEEEGGG-CSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred             EEEEeccc-ChHHHHHHHHHHHHHhCCCCCEeeEeEEEEECCEEEEEEEecCCCcHHHHhhccCCCHHHHHHHHHHHHHH
Confidence            45554332 23567899999999999999999999999999999999999999999998876543   467899999999


Q ss_pred             hchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHH
Q 044022           78 LAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFG  157 (241)
Q Consensus        78 l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G  157 (241)
                      |.|||   +++|+||||||+|||++.++.+||+|||++.........  .....||+.|+|||++.+..++.++||||||
T Consensus       129 L~yLH---~~~iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~~~~~~--~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlG  203 (293)
T d1yhwa1         129 LEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK--RSTMVGTPYWMAPEVVTRKAYGPKVDIWSLG  203 (293)
T ss_dssp             HHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTCC--BCCCCSCGGGCCHHHHSSSCBCTHHHHHHHH
T ss_pred             HHHHH---HCCCcccCCcHHHeEECCCCcEeeccchhheeecccccc--ccccccCCCccChhhhcCCCCCchhceehHh
Confidence            99999   899999999999999999999999999999876543322  2345799999999999999999999999999


Q ss_pred             HHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCC
Q 044022          158 AFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRP  237 (241)
Q Consensus       158 ~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rp  237 (241)
                      |++|+|++|+.||...         ...+........... ...   ...        ..++.+.+|+.+||+.||++||
T Consensus       204 vilyemltG~~Pf~~~---------~~~~~~~~~~~~~~~-~~~---~~~--------~~s~~~~~li~~~L~~dP~~R~  262 (293)
T d1yhwa1         204 IMAIEMIEGEPPYLNE---------NPLRALYLIATNGTP-ELQ---NPE--------KLSAIFRDFLNRCLDMDVEKRG  262 (293)
T ss_dssp             HHHHHHHHSSCTTTTS---------CHHHHHHHHHHHCSC-CCS---SGG--------GSCHHHHHHHHHHTCSSTTTSC
T ss_pred             HHHHHHhhCCCCCCCC---------CHHHHHHHHHhCCCC-CCC---Ccc--------cCCHHHHHHHHHHccCChhHCc
Confidence            9999999999999541         112222222222211 111   111        2236789999999999999999


Q ss_pred             CCCC
Q 044022          238 TMVD  241 (241)
Q Consensus       238 t~~e  241 (241)
                      |++|
T Consensus       263 s~~e  266 (293)
T d1yhwa1         263 SAKE  266 (293)
T ss_dssp             CHHH
T ss_pred             CHHH
Confidence            9854

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.8e-49  Score=317.61  Aligned_cols=214  Identities=20%  Similarity=0.277  Sum_probs=159.4

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc-----hHHHHHHHHHH
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL-----PRLKIASDIVN   76 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-----~~~~~~~~i~~   76 (241)
                      |...........++|.+|+++|++++|||||+++|+|..++..++|||||++|+|.+++.....     .++.++.||+.
T Consensus        60 K~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~iv~Ey~~~g~L~~~~~~~~~~l~~~~~~~i~~qia~  139 (299)
T d1jpaa_          60 KTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAA  139 (299)
T ss_dssp             EECCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHTTTTCSCHHHHHHHHHHHHH
T ss_pred             EEECcccCHHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEEEEEecCCCcceeeeccccCCCCHHHHHHHHHHHHH
Confidence            4444444445667899999999999999999999999999999999999999999998876421     46789999999


Q ss_pred             HhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcce---eecccccCCCccCcccccccCCCcchhh
Q 044022           77 SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHI---TTDRVIGTRGYSAPEYISICVLNEKSNV  153 (241)
Q Consensus        77 ~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~---~~~~~~~~~~~~aPE~~~~~~~~~~~Di  153 (241)
                      ||.|||   +++++||||||+|||++.++.+||+|||+++.........   ......+|+.|+|||.+.+..++.++||
T Consensus       140 gl~yLH---~~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDv  216 (299)
T d1jpaa_         140 GMKYLA---DMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDV  216 (299)
T ss_dssp             HHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCC-----------------------CGGGSCHHHHHSCCCCHHHHH
T ss_pred             HHHHHh---hCCCccCccccceEEECCCCcEEECCcccceEccCCCCcceeeecccccCCccccCHHHHhcCCCCccccc
Confidence            999999   8999999999999999999999999999998665432211   1122357889999999999999999999


Q ss_pred             HHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCC
Q 044022          154 FSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNS  232 (241)
Q Consensus       154 ~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~  232 (241)
                      |||||++|||+| |+.||....         ..+...... .+.....     ..        ..+..+.+|+.+||+.|
T Consensus       217 wS~Gvvl~el~t~g~~Pf~~~~---------~~~~~~~i~-~~~~~~~-----~~--------~~~~~l~~li~~cl~~~  273 (299)
T d1jpaa_         217 WSYGIVMWEVMSYGERPYWDMT---------NQDVINAIE-QDYRLPP-----PM--------DCPSALHQLMLDCWQKD  273 (299)
T ss_dssp             HHHHHHHHHHHTTSCCTTTTCC---------HHHHHHHHH-TTCCCCC-----CT--------TCCHHHHHHHHHHTCSS
T ss_pred             ccchHHHHHHHhCCCCCCCCCC---------HHHHHHHHH-cCCCCCC-----Cc--------cchHHHHHHHHHHcCCC
Confidence            999999999998 899996521         122222222 1211111     11        22367889999999999


Q ss_pred             CCCCCCCCC
Q 044022          233 PEDRPTMVD  241 (241)
Q Consensus       233 p~~Rpt~~e  241 (241)
                      |++|||++|
T Consensus       274 P~~RPs~~e  282 (299)
T d1jpaa_         274 RNHRPKFGQ  282 (299)
T ss_dssp             TTTSCCHHH
T ss_pred             HhHCcCHHH
Confidence            999999853

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-49  Score=311.53  Aligned_cols=200  Identities=20%  Similarity=0.327  Sum_probs=164.6

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ...+++.+|++++++++|||||++++++.+++..++|||||++|+|.+++.....    ....++.||+.||.|||   +
T Consensus        48 ~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~ivmEy~~~g~L~~~l~~~~~l~e~~~~~i~~qi~~al~~lH---~  124 (263)
T d2j4za1          48 GVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH---S  124 (263)
T ss_dssp             TCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---H
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCEEEEEEeecCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH---H
Confidence            4567899999999999999999999999999999999999999999999865322    46789999999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhc
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      ++|+||||||+|||++.++.+||+|||++........    ....||+.|+|||++.+..++.++|||||||++|+|++|
T Consensus       125 ~~ivHrDiKp~Nill~~~~~~kl~DFG~a~~~~~~~~----~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyell~G  200 (263)
T d2j4za1         125 KRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRR----TTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVG  200 (263)
T ss_dssp             TTCCCCCCCGGGEEECTTSCEEECCCCSCSCCCCCCC----EETTEEGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHS
T ss_pred             CCeeeeeeccccceecCCCCEeecccceeeecCCCcc----cccCCCCcccCHHHHcCCCCCchhhhhhHhHHHHHHhcC
Confidence            9999999999999999999999999999976654332    335799999999999999999999999999999999999


Q ss_pred             CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          167 RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +.||...         ...+....... ...      .+...        .++.+.+|+.+||+.||++|||++|
T Consensus       201 ~~Pf~~~---------~~~~~~~~i~~-~~~------~~p~~--------~s~~~~~li~~~L~~dp~~R~t~~e  251 (263)
T d2j4za1         201 KPPFEAN---------TYQETYKRISR-VEF------TFPDF--------VTEGARDLISRLLKHNPSQRPMLRE  251 (263)
T ss_dssp             SCTTCCS---------SHHHHHHHHHT-TCC------CCCTT--------SCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             CCCCCCC---------CHHHHHHHHHc-CCC------CCCcc--------CCHHHHHHHHHHccCCHhHCcCHHH
Confidence            9999541         12222222211 111      11111        2257889999999999999999864

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.5e-50  Score=317.53  Aligned_cols=213  Identities=20%  Similarity=0.288  Sum_probs=169.4

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC--c---hHHHHHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP--L---PRLKIASDIV   75 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~--~---~~~~~~~~i~   75 (241)
                      ||++.........++|.+|+++|++++|||||+++|++.. +..++||||+++|+|.+++....  .   .++.++.|++
T Consensus        41 vK~l~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~-~~~~lvmE~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~  119 (285)
T d1u59a_          41 IKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVS  119 (285)
T ss_dssp             EEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHH
T ss_pred             EEEEChhcCHHHHHHHHHHHHHHHhCCCCCEeeEeeeecc-CeEEEEEEeCCCCcHHHHhhccccCCCHHHHHHHHHHHH
Confidence            4666655555667889999999999999999999999864 46899999999999999875432  2   5788999999


Q ss_pred             HHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcc-eeecccccCCCccCcccccccCCCcchhhH
Q 044022           76 NSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH-ITTDRVIGTRGYSAPEYISICVLNEKSNVF  154 (241)
Q Consensus        76 ~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~-~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~  154 (241)
                      .||.|||   +++++||||||+|||++.++.+||+|||+++........ .......||+.|+|||++.+..++.++|||
T Consensus       120 ~gL~ylH---~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDVw  196 (285)
T d1u59a_         120 MGMKYLE---EKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVW  196 (285)
T ss_dssp             HHHHHHH---HTTEECCCCSGGGEEEEETTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHH
T ss_pred             HHHHHHH---hCCeecCcCchhheeeccCCceeeccchhhhcccccccccccccccccCccccChHHHhCCCCCccchhh
Confidence            9999999   899999999999999999999999999999877654322 223345688999999999989999999999


Q ss_pred             HHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCC
Q 044022          155 SFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSP  233 (241)
Q Consensus       155 s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p  233 (241)
                      |||+++|||+| |+.||....         ..+.... ...+.....     +..        .++.+.+|+.+||+.||
T Consensus       197 S~Gv~l~E~lt~G~~Pf~~~~---------~~~~~~~-i~~~~~~~~-----p~~--------~~~~l~~li~~cl~~~p  253 (285)
T d1u59a_         197 SYGVTMWEALSYGQKPYKKMK---------GPEVMAF-IEQGKRMEC-----PPE--------CPPELYALMSDCWIYKW  253 (285)
T ss_dssp             HHHHHHHHHHTTSCCTTTTCC---------THHHHHH-HHTTCCCCC-----CTT--------CCHHHHHHHHHTTCSSG
T ss_pred             cchHHHHHHHhCCCCCCCCCC---------HHHHHHH-HHcCCCCCC-----CCc--------CCHHHHHHHHHHcCCCH
Confidence            99999999998 899996521         1222222 222222111     122        22578899999999999


Q ss_pred             CCCCCCC
Q 044022          234 EDRPTMV  240 (241)
Q Consensus       234 ~~Rpt~~  240 (241)
                      ++|||+.
T Consensus       254 ~~RPs~~  260 (285)
T d1u59a_         254 EDRPDFL  260 (285)
T ss_dssp             GGSCCHH
T ss_pred             hHCcCHH
Confidence            9999975

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.4e-50  Score=323.30  Aligned_cols=215  Identities=18%  Similarity=0.270  Sum_probs=169.0

Q ss_pred             cccccccccccHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----------------
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----------------   64 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----------------   64 (241)
                      |.............+.+|+.++.++ +|||||+++++|...+..++|||||++|+|.++++...                
T Consensus        73 K~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~  152 (325)
T d1rjba_          73 KMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRL  152 (325)
T ss_dssp             EEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTTTTCC-------------
T ss_pred             EEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEeeCCeEEEEEEcCCCCcHHHHHHhccCCCcchhhhhcccccc
Confidence            4444444555677899999999998 89999999999999999999999999999999986531                


Q ss_pred             -----------chHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccC
Q 044022           65 -----------LPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGT  133 (241)
Q Consensus        65 -----------~~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~  133 (241)
                                 ..++.++.|++.||+|||   +++|+||||||+|||++.++.+||+|||+++...............||
T Consensus       153 ~~~~~~~~l~~~~~~~i~~qi~~gl~yLH---~~~IiHRDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt  229 (325)
T d1rjba_         153 EEEEDLNVLTFEDLLCFAYQVAKGMEFLE---FKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLP  229 (325)
T ss_dssp             --------CCHHHHHHHHHHHHHHHHHHH---HTTEEETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEEC
T ss_pred             ccccccCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCchhccccccCCeEEEeeccccccccCCCceeeeccccCC
Confidence                       135679999999999999   899999999999999999999999999999876655544444566789


Q ss_pred             CCccCcccccccCCCcchhhHHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCch
Q 044022          134 RGYSAPEYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCI  212 (241)
Q Consensus       134 ~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (241)
                      +.|+|||++.+..++.++|||||||++|||++ |..||.....         .+.+......+...+.     ..     
T Consensus       230 ~~y~aPE~l~~~~~~~~~DiwS~Gvil~emlt~g~~Pf~~~~~---------~~~~~~~~~~~~~~~~-----p~-----  290 (325)
T d1rjba_         230 VKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPV---------DANFYKLIQNGFKMDQ-----PF-----  290 (325)
T ss_dssp             GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCC---------SHHHHHHHHTTCCCCC-----CT-----
T ss_pred             CccCChHHHcCCCCCcceeccchhHHHHHHHhCCCCCCCCCCH---------HHHHHHHHhcCCCCCC-----CC-----
Confidence            99999999999999999999999999999998 8999964211         1112222222211111     11     


Q ss_pred             hHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          213 EKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       213 ~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                         ..++.+.+|+.+||+.||++|||++|
T Consensus       291 ---~~~~~l~~li~~cl~~dP~~RPt~~e  316 (325)
T d1rjba_         291 ---YATEEIYIIMQSCWAFDSRKRPSFPN  316 (325)
T ss_dssp             ---TCCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             ---cCCHHHHHHHHHHcCCChhHCcCHHH
Confidence               12367899999999999999999864

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-49  Score=312.55  Aligned_cols=205  Identities=16%  Similarity=0.210  Sum_probs=163.0

Q ss_pred             cccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCC
Q 044022           10 RHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        10 ~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ....+.+.+|++++++++|||||++++++..++..|+||||+++|+|.+++....    .....++.|++.||.|||   
T Consensus        49 ~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivmEy~~gg~L~~~~~~~~~l~e~~~~~~~~qi~~al~ylH---  125 (288)
T d1uu3a_          49 ENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLH---  125 (288)
T ss_dssp             TTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECCEEEEEEEccCCCCHHHhhhccCCCCHHHHHHHHHHHHHHHHhhc---
Confidence            3456789999999999999999999999999999999999999999999876532    246788999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHh
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~  165 (241)
                      +++|+||||||+|||++.++.+||+|||+++...............||+.|+|||++.+..++.++|||||||++|+|++
T Consensus       126 ~~~iiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~~DiwSlGvilyell~  205 (288)
T d1uu3a_         126 GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVA  205 (288)
T ss_dssp             HTTEECSCCSGGGEEECTTSCEEECCCTTCEECC----------CCCCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             cccEEcCcCCccccccCCCceEEecccccceecccCCcccccccccCCccccCceeeccCCCCcccceehhhHHHHHHhh
Confidence            99999999999999999999999999999987765443333345679999999999999999999999999999999999


Q ss_pred             cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          166 GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       166 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      |+.||...         ...+....... ... .     +...        .++.+.+|+.+||+.||++|||++|
T Consensus       206 g~~Pf~~~---------~~~~~~~~i~~-~~~-~-----~p~~--------~s~~~~~li~~~L~~dP~~R~t~~e  257 (288)
T d1uu3a_         206 GLPPFRAG---------NEYLIFQKIIK-LEY-D-----FPEK--------FFPKARDLVEKLLVLDATKRLGCEE  257 (288)
T ss_dssp             SSCSSCCS---------SHHHHHHHHHT-TCC-C-----CCTT--------CCHHHHHHHHTTSCSSGGGSTTSGG
T ss_pred             CCCCCCCc---------CHHHHHHHHHc-CCC-C-----CCcc--------CCHHHHHHHHHHccCCHhHCcCHHH
Confidence            99999641         11122222211 111 1     1111        2256889999999999999999875

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-49  Score=313.10  Aligned_cols=214  Identities=21%  Similarity=0.290  Sum_probs=164.8

Q ss_pred             Cccccccc-ccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHH
Q 044022            1 MKFYGHEY-HRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIV   75 (241)
Q Consensus         1 iK~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~   75 (241)
                      ||++..+. +....++|.+|+++|++++|||||+++++|.. +..++||||+++|+|.+++.....    .++.++.||+
T Consensus        39 vK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~-~~~~lvmE~~~~g~L~~~l~~~~~l~~~~~~~i~~qi~  117 (277)
T d1xbba_          39 VKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVS  117 (277)
T ss_dssp             EEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEES-SSEEEEEECCTTEEHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred             EEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEecc-CCEEEEEEcCCCCcHHHHHhhccCCCHHHHHHHHHHHH
Confidence            45554433 22345789999999999999999999999854 457899999999999999876532    5788999999


Q ss_pred             HHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcc-eeecccccCCCccCcccccccCCCcchhhH
Q 044022           76 NSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH-ITTDRVIGTRGYSAPEYISICVLNEKSNVF  154 (241)
Q Consensus        76 ~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~-~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~  154 (241)
                      .||.|||   +++++||||||+|||++.++.+||+|||+++........ .......||+.|+|||.+.+..++.++|||
T Consensus       118 ~gl~ylH---~~~iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiw  194 (277)
T d1xbba_         118 MGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVW  194 (277)
T ss_dssp             HHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHH
T ss_pred             HHHhhHH---hCCcccCCCcchhhcccccCcccccchhhhhhccccccccccccccCCCceecCchhhcCCCCCchhhhc
Confidence            9999999   899999999999999999999999999999876554322 223345688999999999999999999999


Q ss_pred             HHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCC
Q 044022          155 SFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSP  233 (241)
Q Consensus       155 s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p  233 (241)
                      |||+++|||++ |+.||....         ..+..... ..+.....+     ..        .+..+.+|+.+||+.||
T Consensus       195 S~Gv~l~ellt~g~~Pf~~~~---------~~~~~~~i-~~~~~~~~p-----~~--------~~~~~~~li~~cl~~dp  251 (277)
T d1xbba_         195 SFGVLMWEAFSYGQKPYRGMK---------GSEVTAML-EKGERMGCP-----AG--------CPREMYDLMNLCWTYDV  251 (277)
T ss_dssp             HHHHHHHHHHTTTCCSSTTCC---------HHHHHHHH-HTTCCCCCC-----TT--------CCHHHHHHHHHHTCSST
T ss_pred             cchhhhhHHhhCCCCCCCCCC---------HHHHHHHH-HcCCCCCCC-----cc--------cCHHHHHHHHHHcCCCH
Confidence            99999999998 899996521         12222222 222211111     11        23578899999999999


Q ss_pred             CCCCCCCC
Q 044022          234 EDRPTMVD  241 (241)
Q Consensus       234 ~~Rpt~~e  241 (241)
                      ++|||++|
T Consensus       252 ~~RPs~~~  259 (277)
T d1xbba_         252 ENRPGFAA  259 (277)
T ss_dssp             TTSCCHHH
T ss_pred             hHCcCHHH
Confidence            99999753

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9e-50  Score=322.73  Aligned_cols=165  Identities=22%  Similarity=0.289  Sum_probs=143.0

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVN   76 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~   76 (241)
                      ||++..+.......++.+|+++|++++|||||+++++|...++.|+||||+++|+|.+++.+...    ....++.|++.
T Consensus        36 iK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~iVmEy~~gg~L~~~l~~~~~l~~~~~~~~~~qil~  115 (322)
T d1s9ja_          36 RKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIK  115 (322)
T ss_dssp             EEEEECCCCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSSEEEEEEECCTTEEHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred             EEEEChhhCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCCcHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence            46666555555677899999999999999999999999999999999999999999999865322    46789999999


Q ss_pred             HhchhhcCCC-CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHH
Q 044022           77 SLAYLHFGFP-RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFS  155 (241)
Q Consensus        77 ~l~~lh~~~~-~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s  155 (241)
                      ||.|||   + ++|+||||||+|||++.++.+||+|||+|.......    ....+||+.|+|||++.+..++.++||||
T Consensus       116 aL~yLH---~~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~----~~~~~GT~~Y~APEvl~~~~y~~~~DiWS  188 (322)
T d1s9ja_         116 GLTYLR---EKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM----ANSFVGTRSYMSPERLQGTHYSVQSDIWS  188 (322)
T ss_dssp             HHHHHH---HHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHHT----C---CCSSCCCCHHHHHCSCCCTTHHHHH
T ss_pred             HHHHHH---HhCCEEccccCHHHeeECCCCCEEEeeCCCccccCCCc----cccccCCccccCchHHcCCCCCcHHHHHH
Confidence            999999   6 489999999999999999999999999997653321    13457999999999999999999999999


Q ss_pred             HHHHHHHHHhcCccccc
Q 044022          156 FGAFLFELLAGRIHIWD  172 (241)
Q Consensus       156 ~G~~~~~~~~g~~p~~~  172 (241)
                      +||++|||++|+.||..
T Consensus       189 lGvil~ell~G~~Pf~~  205 (322)
T d1s9ja_         189 MGLSLVEMAVGRYPIPP  205 (322)
T ss_dssp             HHHHHHHHHHSSCCSSC
T ss_pred             HHHHHHHHHHCCCCCCC
Confidence            99999999999999965

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-48  Score=307.23  Aligned_cols=204  Identities=17%  Similarity=0.256  Sum_probs=158.4

Q ss_pred             ccccHHHHHHHHHHHHhcCCCcccceeeeeee----CCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhch
Q 044022            9 HRHTYGSCINNITYAAQMSHNHILKRIGCCLQ----TPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAY   80 (241)
Q Consensus         9 ~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~----~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~   80 (241)
                      .....+.|.+|+++|++++|||||++++++..    ...+++||||+++|+|.+++.....    ....++.||+.||.|
T Consensus        48 ~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~ivmE~~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~gl~y  127 (270)
T d1t4ha_          48 TKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQF  127 (270)
T ss_dssp             CHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEEEEeCCCCCcHHHHHhccccccHHHHHHHHHHHHHHHHH
Confidence            33456779999999999999999999999875    3467999999999999999865422    457899999999999


Q ss_pred             hhcCCCCC--ceeccCCCCCeeec-CCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHH
Q 044022           81 LHFGFPRP--IVLRNFKTQNILFN-EENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFG  157 (241)
Q Consensus        81 lh~~~~~~--ivh~dl~~~nil~~-~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G  157 (241)
                      ||   +++  |+||||||+|||++ .++.+||+|||++........    ....||+.|+|||++.+ .++.++||||||
T Consensus       128 LH---~~~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~~~~~~~----~~~~GT~~Y~aPE~~~~-~~~~~~DIwSlG  199 (270)
T d1t4ha_         128 LH---TRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFA----KAVIGTPEFMAPEMYEE-KYDESVDVYAFG  199 (270)
T ss_dssp             HH---TSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCTTSB----EESCSSCCCCCGGGGGT-CCCTHHHHHHHH
T ss_pred             HH---HCCCCEEeCCcChhhceeeCCCCCEEEeecCcceeccCCcc----CCcccCccccCHHHhCC-CCCCcCchhhHH
Confidence            99   777  99999999999996 578999999999975443322    34579999999999875 689999999999


Q ss_pred             HHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCC
Q 044022          158 AFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRP  237 (241)
Q Consensus       158 ~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rp  237 (241)
                      |++|+|++|+.||.....        ..+....... +    .........        .++++.+|+.+||+.||++||
T Consensus       200 vilyel~~g~~Pf~~~~~--------~~~~~~~i~~-~----~~~~~~~~~--------~~~~~~~li~~~l~~dp~~R~  258 (270)
T d1t4ha_         200 MCMLEMATSEYPYSECQN--------AAQIYRRVTS-G----VKPASFDKV--------AIPEVKEIIEGCIRQNKDERY  258 (270)
T ss_dssp             HHHHHHHHSSCTTTTCSS--------HHHHHHHHTT-T----CCCGGGGGC--------CCHHHHHHHHHHSCSSGGGSC
T ss_pred             HHHHHHHHCCCCCCCccc--------HHHHHHHHHc-C----CCCcccCcc--------CCHHHHHHHHHHccCCHhHCc
Confidence            999999999999954211        1111122111 1    111111111        225688999999999999999


Q ss_pred             CCCC
Q 044022          238 TMVD  241 (241)
Q Consensus       238 t~~e  241 (241)
                      |++|
T Consensus       259 s~~e  262 (270)
T d1t4ha_         259 SIKD  262 (270)
T ss_dssp             CHHH
T ss_pred             CHHH
Confidence            9864

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-48  Score=307.73  Aligned_cols=212  Identities=22%  Similarity=0.318  Sum_probs=156.5

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc-----hHHHHHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL-----PRLKIASDIV   75 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-----~~~~~~~~i~   75 (241)
                      ||.+..  +....++|.+|++++++++|||||+++|+|..++..++||||+++|+|.+++.....     .++.++.|++
T Consensus        34 vK~i~~--~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~i~~qia  111 (263)
T d1sm2a_          34 IKTIRE--GAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVC  111 (263)
T ss_dssp             EEECCS--SSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTTTTCCCHHHHHHHHHHHH
T ss_pred             EEEECC--CcCcHHHHHHHHHHHHhcCCCCcccccceeccCCceEEEEEecCCCcHHHHhhccccCCCHHHHHHHHHHHH
Confidence            455543  233567899999999999999999999999999999999999999999999865421     4678999999


Q ss_pred             HHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHH
Q 044022           76 NSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFS  155 (241)
Q Consensus        76 ~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s  155 (241)
                      .||.|||   +++|+||||||+|||++.++.+||+|||+++......... .....||+.|+|||++.+..++.++||||
T Consensus       112 ~gl~~lH---~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~-~~~~~gt~~y~aPE~l~~~~~~~k~DVwS  187 (263)
T d1sm2a_         112 EGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTS-STGTKFPVKWASPEVFSFSRYSSKSDVWS  187 (263)
T ss_dssp             HHHHHHH---HTTCCCTTCSGGGEEECGGGCEEECSCC-------------------CTTSCCHHHHTTCCCCHHHHHHH
T ss_pred             HHHHhhh---ccceeecccchhheeecCCCCeEecccchheeccCCCcee-ecceecCcccCChHHhcCCCCCchhhhcc
Confidence            9999999   8999999999999999999999999999997665433222 23346889999999999999999999999


Q ss_pred             HHHHHHHHHhc-CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCC
Q 044022          156 FGAFLFELLAG-RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPE  234 (241)
Q Consensus       156 ~G~~~~~~~~g-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~  234 (241)
                      ||+++|||+++ .+||..         ....+...... .+....  .+   .        .+++.+.+++.+||+.||+
T Consensus       188 ~Gvil~el~t~~~~~~~~---------~~~~~~~~~i~-~~~~~~--~p---~--------~~~~~l~~li~~cl~~~p~  244 (263)
T d1sm2a_         188 FGVLMWEVFSEGKIPYEN---------RSNSEVVEDIS-TGFRLY--KP---R--------LASTHVYQIMNHCWKERPE  244 (263)
T ss_dssp             HHHHHHHHHTTSCCTTCS---------CCHHHHHHHHH-HTCCCC--CC---T--------TSCHHHHHHHHHHTCSSGG
T ss_pred             hHHHHHHHHHCCCCCCCC---------CCHHHHHHHHH-hcCCCC--Cc---c--------ccCHHHHHHHHHHccCCHh
Confidence            99999999995 554432         11122222222 221111  11   1        1235788999999999999


Q ss_pred             CCCCCCC
Q 044022          235 DRPTMVD  241 (241)
Q Consensus       235 ~Rpt~~e  241 (241)
                      +|||++|
T Consensus       245 ~Rps~~~  251 (263)
T d1sm2a_         245 DRPAFSR  251 (263)
T ss_dssp             GSCCHHH
T ss_pred             HCcCHHH
Confidence            9999864

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=8.7e-49  Score=314.49  Aligned_cols=215  Identities=22%  Similarity=0.258  Sum_probs=152.8

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVN   76 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~   76 (241)
                      ||++...........+.+|++++++++|||||++++++..++..++|||||+||+|.+++.....    ....++.||+.
T Consensus        39 vK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lvmE~~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~  118 (307)
T d1a06a_          39 IKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLD  118 (307)
T ss_dssp             EEEEEC----------CHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHTCSCCCHHHHHHHHHHHHH
T ss_pred             EEEEchHHhhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeccCCCcHHHhhhcccCCCHHHHHHHHHHHHH
Confidence            46665555444566788999999999999999999999999999999999999999999876532    46789999999


Q ss_pred             HhchhhcCCCCCceeccCCCCCeeec---CCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhh
Q 044022           77 SLAYLHFGFPRPIVLRNFKTQNILFN---EENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNV  153 (241)
Q Consensus        77 ~l~~lh~~~~~~ivh~dl~~~nil~~---~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di  153 (241)
                      ||.|||   +++++||||||+|||+.   .++.+||+|||++........   .....||+.|+|||++.+..++.++||
T Consensus       119 al~ylH---~~~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~~~~~---~~~~~GT~~y~APE~~~~~~~~~~~Di  192 (307)
T d1a06a_         119 AVKYLH---DLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSV---LSTACGTPGYVAPEVLAQKPYSKAVDC  192 (307)
T ss_dssp             HHHHHH---HTTCCCSCCCGGGEEESSSSTTCCEEECCC---------------------CTTSCHHHHTTCCCCTHHHH
T ss_pred             HHHhhh---hceeeeEEecccceeecccCCCceEEEeccceeEEccCCCe---eeeeeeCccccCcHHHcCCCCCcHHHh
Confidence            999999   89999999999999995   578999999999976544322   234579999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCC
Q 044022          154 FSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSP  233 (241)
Q Consensus       154 ~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p  233 (241)
                      |||||++|+|++|+.||...         ...+...........   .......        ..++.+.+|+.+||+.||
T Consensus       193 wSlGvilyell~g~~Pf~~~---------~~~~~~~~i~~~~~~---~~~~~~~--------~~s~~~~~li~~~L~~dP  252 (307)
T d1a06a_         193 WSIGVIAYILLCGYPPFYDE---------NDAKLFEQILKAEYE---FDSPYWD--------DISDSAKDFIRHLMEKDP  252 (307)
T ss_dssp             HHHHHHHHHHHHSSCSCCCS---------SHHHHHHHHHTTCCC---CCTTTTT--------TSCHHHHHHHHHHSCSSG
T ss_pred             hhhhHHHHHHHhCCCCCCCC---------CHHHHHHHHhccCCC---CCCcccc--------CCCHHHHHHHHHHccCCH
Confidence            99999999999999999641         112222222211110   1111111        223578999999999999


Q ss_pred             CCCCCCCC
Q 044022          234 EDRPTMVD  241 (241)
Q Consensus       234 ~~Rpt~~e  241 (241)
                      ++|||++|
T Consensus       253 ~~R~s~~e  260 (307)
T d1a06a_         253 EKRFTCEQ  260 (307)
T ss_dssp             GGSCCHHH
T ss_pred             hHCcCHHH
Confidence            99999864

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-49  Score=313.06  Aligned_cols=214  Identities=20%  Similarity=0.236  Sum_probs=165.7

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC--Cc---hHHHHHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA--PL---PRLKIASDIV   75 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~--~~---~~~~~~~~i~   75 (241)
                      ||++... .....++|.+|++++++++|||||++++++..++..++|||||++|+|.+++...  ..   .+..++.||+
T Consensus        42 vK~i~~~-~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lvmEy~~~g~L~~~~~~~~~~l~e~~~~~i~~qi~  120 (288)
T d2jfla1          42 AKVIDTK-SEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTL  120 (288)
T ss_dssp             EEEEECS-SSGGGGGTHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCTTEEHHHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred             EEEECcC-CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCeEEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence            4555433 3345678999999999999999999999999999999999999999999986432  22   4678999999


Q ss_pred             HHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccc-----ccCCCcc
Q 044022           76 NSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYIS-----ICVLNEK  150 (241)
Q Consensus        76 ~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~-----~~~~~~~  150 (241)
                      .||.|||   +++|+||||||+|||++.++.+||+|||++.......  .......||+.|+|||++.     ...++.+
T Consensus       121 ~gL~ylH---~~~ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~~~~~--~~~~~~~Gt~~y~APE~l~~~~~~~~~y~~k  195 (288)
T d2jfla1         121 DALNYLH---DNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTI--QRRDSFIGTPYWMAPEVVMCETSKDRPYDYK  195 (288)
T ss_dssp             HHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECHHHH--HHHTCCCSCCTTCCHHHHTTCSTTTSSTTTH
T ss_pred             HHHHHHH---HCCEEEeecChhheeECCCCCEEEEechhhhccCCCc--ccccccccccccCCHHHHhhcccCCCCCChh
Confidence            9999999   8999999999999999999999999999987543221  1123457999999999984     3467899


Q ss_pred             hhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhcc
Q 044022          151 SNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVN  230 (241)
Q Consensus       151 ~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~  230 (241)
                      +|||||||++|+|++|+.||.....         .+......... ......   ..        ..++.+.+|+.+||+
T Consensus       196 ~DiwSlGvilyemltg~~Pf~~~~~---------~~~~~~i~~~~-~~~~~~---~~--------~~s~~~~~li~~~L~  254 (288)
T d2jfla1         196 ADVWSLGITLIEMAEIEPPHHELNP---------MRVLLKIAKSE-PPTLAQ---PS--------RWSSNFKDFLKKCLE  254 (288)
T ss_dssp             HHHHHHHHHHHHHHHSSCTTTTSCG---------GGHHHHHHHSC-CCCCSS---GG--------GSCHHHHHHHHHHSC
T ss_pred             hhHHHHHHHHHHHhhCCCCCCCCCH---------HHHHHHHHcCC-CCCCCc---cc--------cCCHHHHHHHHHHcc
Confidence            9999999999999999999965221         11122221111 111111   11        223678999999999


Q ss_pred             CCCCCCCCCCC
Q 044022          231 NSPEDRPTMVD  241 (241)
Q Consensus       231 ~~p~~Rpt~~e  241 (241)
                      .||++|||++|
T Consensus       255 ~dp~~R~t~~e  265 (288)
T d2jfla1         255 KNVDARWTTSQ  265 (288)
T ss_dssp             SSTTTSCCHHH
T ss_pred             CChhHCcCHHH
Confidence            99999999864

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-48  Score=311.41  Aligned_cols=213  Identities=19%  Similarity=0.316  Sum_probs=166.8

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC------chHHHHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP------LPRLKIASDI   74 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~------~~~~~~~~~i   74 (241)
                      ||.+..+  ....++|.+|+++|++++|||||+++++|.+++..++|||||++|+|.+++....      ..++.++.|+
T Consensus        47 vK~i~~~--~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv~E~~~~g~l~~~l~~~~~~~~~~~~~~~i~~qi  124 (287)
T d1opja_          47 VKTLKED--TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQI  124 (287)
T ss_dssp             EEECCTT--CSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHH
T ss_pred             EEEECCc--cchHHHHHHHHHHHHhCCCCCEecCCccEeeCCeeEEEeecccCcchHHHhhhccccchHHHHHHHHHHHH
Confidence            4555433  2356789999999999999999999999999999999999999999999985431      1467899999


Q ss_pred             HHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhH
Q 044022           75 VNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVF  154 (241)
Q Consensus        75 ~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~  154 (241)
                      +.||.|||   +++|+||||||+|||++.++.+||+|||+++........ ......|++.|+|||++.+..++.++|||
T Consensus       125 ~~gL~yLH---~~~iiHrDlKp~NILl~~~~~~Kl~DFG~a~~~~~~~~~-~~~~~~g~~~y~aPE~~~~~~~~~k~Diw  200 (287)
T d1opja_         125 SSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYT-AHAGAKFPIKWTAPESLAYNKFSIKSDVW  200 (287)
T ss_dssp             HHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCCCTTTCCSSSSE-EETTEEECGGGCCHHHHHHCCCSHHHHHH
T ss_pred             HHHHHHHH---HCCcccCccccCeEEECCCCcEEEccccceeecCCCCce-eeccccccccccChHHHcCCCCCchhhhh
Confidence            99999999   899999999999999999999999999999866544332 22334578899999999999999999999


Q ss_pred             HHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCC
Q 044022          155 SFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPE  234 (241)
Q Consensus       155 s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~  234 (241)
                      |||+++|||++|..|+....        ..... ......+....     ...        ..++.+.+|+.+||+.||+
T Consensus       201 S~Gv~l~ell~~~~p~~~~~--------~~~~~-~~~i~~~~~~~-----~~~--------~~~~~l~~li~~cl~~dP~  258 (287)
T d1opja_         201 AFGVLLWEIATYGMSPYPGI--------DLSQV-YELLEKDYRME-----RPE--------GCPEKVYELMRACWQWNPS  258 (287)
T ss_dssp             HHHHHHHHHHTTSCCSSTTC--------CHHHH-HHHHHTTCCCC-----CCT--------TCCHHHHHHHHHHTCSSGG
T ss_pred             hHHHHHHHHHhCCCCCCCcc--------hHHHH-HHHHhcCCCCC-----CCc--------cchHHHHHHHHHHcCCCHh
Confidence            99999999999777764311        11121 12222221111     111        1235789999999999999


Q ss_pred             CCCCCCC
Q 044022          235 DRPTMVD  241 (241)
Q Consensus       235 ~Rpt~~e  241 (241)
                      +|||++|
T Consensus       259 ~Rps~~e  265 (287)
T d1opja_         259 DRPSFAE  265 (287)
T ss_dssp             GSCCHHH
T ss_pred             HCcCHHH
Confidence            9999853

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-49  Score=309.94  Aligned_cols=216  Identities=18%  Similarity=0.228  Sum_probs=154.4

Q ss_pred             Cccccccc-ccccHHHHHHHHHHHHhcCCCcccceeeeeee--CCcceEEEEecCCCCHHHhhcCC-----C---chHHH
Q 044022            1 MKFYGHEY-HRHTYGSCINNITYAAQMSHNHILKRIGCCLQ--TPIPILVFQSVEYGTLRDCIFGA-----P---LPRLK   69 (241)
Q Consensus         1 iK~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~--~~~~~lv~e~~~~~sL~~~l~~~-----~---~~~~~   69 (241)
                      ||.+.... .+...+.+.+|++++++++|||||++++++.+  .+.+++|||||++|+|.+++...     .   ..+..
T Consensus        34 vK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~ivmEy~~~g~L~~~i~~~~~~~~~l~e~~~~~  113 (269)
T d2java1          34 WKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLR  113 (269)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEEEEEECCTTEEHHHHHHHHHHHTCCCCHHHHHH
T ss_pred             EEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEEEEEecCCCCcHHHHHHhccccCCCCCHHHHHH
Confidence            35554332 33446678999999999999999999999864  45689999999999999988532     1   24778


Q ss_pred             HHHHHHHHhchhhcCC--CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCC
Q 044022           70 IASDIVNSLAYLHFGF--PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVL  147 (241)
Q Consensus        70 ~~~~i~~~l~~lh~~~--~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~  147 (241)
                      ++.|++.||.|||+..  ..+|+||||||+|||++.++.+||+|||+++........  .....||+.|+|||++.+..+
T Consensus       114 i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~~--~~~~~gt~~Y~APE~l~~~~~  191 (269)
T d2java1         114 VMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSF--AKAFVGTPYYMSPEQMNRMSY  191 (269)
T ss_dssp             HHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECCHHHHHHC-------------CCCSCCCHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEeeccceeecccCCCc--cccCCCCcccCCHHHHcCCCC
Confidence            9999999999999311  134999999999999999999999999999876543221  234578999999999998999


Q ss_pred             CcchhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHH
Q 044022          148 NEKSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLE  227 (241)
Q Consensus       148 ~~~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  227 (241)
                      +.++|||||||++|+|++|+.||...         ...+..... ..+.....     ...        .++.+.+|+.+
T Consensus       192 ~~~~DIwSlGvilyel~tg~~Pf~~~---------~~~~~~~~i-~~~~~~~~-----~~~--------~s~~l~~li~~  248 (269)
T d2java1         192 NEKSDIWSLGCLLYELCALMPPFTAF---------SQKELAGKI-REGKFRRI-----PYR--------YSDELNEIITR  248 (269)
T ss_dssp             CHHHHHHHHHHHHHHHHHSSCSCCCS---------SHHHHHHHH-HHTCCCCC-----CTT--------SCHHHHHHHHH
T ss_pred             ChHHHHHhhCHHHHHHhhCCCCCCCC---------CHHHHHHHH-HcCCCCCC-----Ccc--------cCHHHHHHHHH
Confidence            99999999999999999999999542         112222222 22222211     111        22578999999


Q ss_pred             hccCCCCCCCCCCC
Q 044022          228 CVNNSPEDRPTMVD  241 (241)
Q Consensus       228 cl~~~p~~Rpt~~e  241 (241)
                      ||+.||++|||++|
T Consensus       249 ~L~~dp~~Rps~~e  262 (269)
T d2java1         249 MLNLKDYHRPSVEE  262 (269)
T ss_dssp             HTCSSGGGSCCHHH
T ss_pred             HcCCChhHCcCHHH
Confidence            99999999999864

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-48  Score=307.41  Aligned_cols=216  Identities=23%  Similarity=0.266  Sum_probs=161.2

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC--c---hHHHHHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP--L---PRLKIASDIV   75 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~--~---~~~~~~~~i~   75 (241)
                      ||.+..........+|.+|++++++++|||||+++|++...+..++|+||+.++++.+.+....  .   .++.++.|++
T Consensus        41 vK~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~  120 (283)
T d1mqba_          41 IKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIA  120 (283)
T ss_dssp             EEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHH
T ss_pred             EEEECcccChHHHHHHHHHHHHHHhcCCCCEeeeeEEEecCCceEEEEEecccCcchhhhhcccccccHHHHHHHHHHHH
Confidence            4555554555556789999999999999999999999999999999999999999998875442  1   4678999999


Q ss_pred             HHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcc-eeecccccCCCccCcccccccCCCcchhhH
Q 044022           76 NSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH-ITTDRVIGTRGYSAPEYISICVLNEKSNVF  154 (241)
Q Consensus        76 ~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~-~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~  154 (241)
                      .|+.|||   +++|+||||||+|||++.++.+||+|||+++........ .......||+.|+|||++.+..++.++|||
T Consensus       121 ~gl~~lH---~~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~sDI~  197 (283)
T d1mqba_         121 AGMKYLA---NMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVW  197 (283)
T ss_dssp             HHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCCCC-----------------CCCGGGSCHHHHHSCCCCHHHHHH
T ss_pred             Hhhhhcc---ccccccCccccceEEECCCCeEEEcccchhhcccCCCccceEeccCCCCccccCHHHHccCCCCCccccc
Confidence            9999999   899999999999999999999999999999865443221 122334578999999999999999999999


Q ss_pred             HHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCC
Q 044022          155 SFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPE  234 (241)
Q Consensus       155 s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~  234 (241)
                      |||+++|||++|..|+....        ...+..... ..+.....     ...        .+..+.+|+.+||+.||+
T Consensus       198 S~Gvil~el~t~~~~~~~~~--------~~~~~~~~i-~~~~~~~~-----~~~--------~~~~l~~li~~cl~~~p~  255 (283)
T d1mqba_         198 SFGIVMWEVMTYGERPYWEL--------SNHEVMKAI-NDGFRLPT-----PMD--------CPSAIYQLMMQCWQQERA  255 (283)
T ss_dssp             HHHHHHHHHHTTSCCTTTTC--------CHHHHHHHH-HTTCCCCC-----CTT--------CBHHHHHHHHHHTCSSTT
T ss_pred             ccHHHHHHHHhCCCCccccC--------CHHHHHHHH-hccCCCCC-----chh--------hHHHHHHHHHHHCcCCHh
Confidence            99999999999766653311        112222222 22211111     111        225789999999999999


Q ss_pred             CCCCCCC
Q 044022          235 DRPTMVD  241 (241)
Q Consensus       235 ~Rpt~~e  241 (241)
                      +|||+.|
T Consensus       256 ~RPt~~e  262 (283)
T d1mqba_         256 RRPKFAD  262 (283)
T ss_dssp             TSCCHHH
T ss_pred             HCcCHHH
Confidence            9999853

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=4.9e-48  Score=310.23  Aligned_cols=200  Identities=21%  Similarity=0.318  Sum_probs=159.7

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC-Cc---hHHHHHHHHHHHhchhhcCCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA-PL---PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~-~~---~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ...+.+.+|++++++++|||||++++++..++..++|||||.+|+|..++... ..   .+..++.||+.||.|||   +
T Consensus        57 ~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv~E~~~~g~l~~~~~~~~~l~e~~~~~i~~qi~~aL~yLH---~  133 (309)
T d1u5ra_          57 EKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLH---S  133 (309)
T ss_dssp             HHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCSEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH---H
T ss_pred             HHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEEEEEEEecCCCchHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH---h
Confidence            34567999999999999999999999999999999999999999998765433 22   46789999999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc---cCCCcchhhHHHHHHHHHH
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI---CVLNEKSNVFSFGAFLFEL  163 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~---~~~~~~~Di~s~G~~~~~~  163 (241)
                      ++|+||||||+|||++.++.+||+|||++......      ....||+.|+|||++.+   ..++.++|||||||++|+|
T Consensus       134 ~~iiHrDiKp~NILl~~~~~~Kl~DFG~a~~~~~~------~~~~GT~~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel  207 (309)
T d1u5ra_         134 HNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA------NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIEL  207 (309)
T ss_dssp             TTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSB------CCCCSCGGGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHH
T ss_pred             CCEeccCCCcceEEECCCCCEEEeecccccccCCC------CccccCccccCHHHHhccCCCCcCchhhhhhHHHHHHHH
Confidence            99999999999999999999999999999765432      34579999999999864   3588999999999999999


Q ss_pred             HhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          164 LAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       164 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ++|+.||...         ...+......... ......    .        ..++.+.+|+.+||+.||++|||++|
T Consensus       208 ~~g~~Pf~~~---------~~~~~~~~i~~~~-~~~~~~----~--------~~s~~~~~li~~~L~~dP~~Rpt~~e  263 (309)
T d1u5ra_         208 AERKPPLFNM---------NAMSALYHIAQNE-SPALQS----G--------HWSEYFRNFVDSCLQKIPQDRPTSEV  263 (309)
T ss_dssp             HHSSCTTTTS---------CHHHHHHHHHHSC-CCCCSC----T--------TSCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             HHCCCCCCCC---------CHHHHHHHHHhCC-CCCCCC----C--------CCCHHHHHHHHHHCcCChhHCcCHHH
Confidence            9999999542         1112222221111 111111    1        12357899999999999999999864

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9e-48  Score=303.98  Aligned_cols=212  Identities=22%  Similarity=0.256  Sum_probs=163.9

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC------chHHHHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP------LPRLKIASDI   74 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~------~~~~~~~~~i   74 (241)
                      ||.+...  ....++|.+|++++++++|||||++++++.+ +..++||||+++|+|.+++....      ..++.++.||
T Consensus        42 vK~~~~~--~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~-~~~~iv~Ey~~~g~L~~~~~~~~~~~l~~~~~~~i~~qi  118 (272)
T d1qpca_          42 VKSLKQG--SMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQI  118 (272)
T ss_dssp             EEEECTT--SSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHH
T ss_pred             EEEEccC--cCCHHHHHHHHHHHHhCCCCCEeEEEeeecc-CCeEEEEEeCCCCcHHHHHhhcCCCCCCHHHHHHHHHHH
Confidence            4555432  2356789999999999999999999998854 56799999999999999876532      2467899999


Q ss_pred             HHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhH
Q 044022           75 VNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVF  154 (241)
Q Consensus        75 ~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~  154 (241)
                      +.||.|||   +++|+||||||+|||++.++.+||+|||+++....... .......|++.|+|||++.+..++.++|||
T Consensus       119 ~~gl~~lH---~~~ivHrDiKp~NIll~~~~~~Kl~DFGla~~~~~~~~-~~~~~~~gt~~y~APE~~~~~~~~~~sDvw  194 (272)
T d1qpca_         119 AEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEY-TAREGAKFPIKWTAPEAINYGTFTIKSDVW  194 (272)
T ss_dssp             HHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCE-ECCTTCCCCTTTSCHHHHHHCEECHHHHHH
T ss_pred             HHHHHHHH---hCCcccCccchhheeeecccceeeccccceEEccCCcc-ccccccCCcccccChHHHhCCCCCchhhhh
Confidence            99999999   89999999999999999999999999999987654332 222345688999999999988999999999


Q ss_pred             HHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCC
Q 044022          155 SFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPE  234 (241)
Q Consensus       155 s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~  234 (241)
                      |||+++|||+||..|+...        ....+...... .+.....     ...        .++.+.+|+.+||+.||+
T Consensus       195 S~Gvvl~ellt~~~~~~~~--------~~~~~~~~~i~-~~~~~~~-----p~~--------~~~~l~~li~~cl~~~P~  252 (272)
T d1qpca_         195 SFGILLTEIVTHGRIPYPG--------MTNPEVIQNLE-RGYRMVR-----PDN--------CPEELYQLMRLCWKERPE  252 (272)
T ss_dssp             HHHHHHHHHHTTTCCSSTT--------CCHHHHHHHHH-TTCCCCC-----CTT--------CCHHHHHHHHHHTCSSGG
T ss_pred             hhHHHHHHHHhCCCCCCCC--------CCHHHHHHHHH-hcCCCCC-----ccc--------ChHHHHHHHHHHcCCCHh
Confidence            9999999999966555331        11222222222 2211111     111        225789999999999999


Q ss_pred             CCCCCCC
Q 044022          235 DRPTMVD  241 (241)
Q Consensus       235 ~Rpt~~e  241 (241)
                      +|||++|
T Consensus       253 ~Rpt~~e  259 (272)
T d1qpca_         253 DRPTFDY  259 (272)
T ss_dssp             GSCCHHH
T ss_pred             HCcCHHH
Confidence            9999853

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-47  Score=299.41  Aligned_cols=212  Identities=18%  Similarity=0.305  Sum_probs=168.3

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc-----hHHHHHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL-----PRLKIASDIV   75 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-----~~~~~~~~i~   75 (241)
                      ||.+..+  ....++|++|++++++++|||||+++|+|.+++..++||||+++|+|.+++.....     .+.+++.|++
T Consensus        33 vK~l~~~--~~~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~iv~Ey~~~g~l~~~~~~~~~~~~~~~~~~i~~qi~  110 (258)
T d1k2pa_          33 IKMIKEG--SMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVC  110 (258)
T ss_dssp             EEEEESS--SSCHHHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEEEEECCTTEEHHHHHHSGGGCCCHHHHHHHHHHHH
T ss_pred             EEEECcC--cCCHHHHHHHHHHHHhcCCCceeeEEEEEeeCCceEEEEEccCCCcHHHhhhccccCCcHHHHHHHHHHHH
Confidence            3555433  23567899999999999999999999999999999999999999999998655422     4778999999


Q ss_pred             HHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHH
Q 044022           76 NSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFS  155 (241)
Q Consensus        76 ~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s  155 (241)
                      .||.|||   +.+|+||||||+||+++.++.+||+|||++......... ......+|..|+|||.+....++.++||||
T Consensus       111 ~gl~~LH---~~~iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~~-~~~~~~~t~~y~aPE~~~~~~~~~ksDiwS  186 (258)
T d1k2pa_         111 EAMEYLE---SKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYT-SSVGSKFPVRWSPPEVLMYSKFSSKSDIWA  186 (258)
T ss_dssp             HHHHHHH---HTTBCCSCCSGGGEEECTTCCEEECCCSSCCBCSSSSCC-CCCCSCCCGGGCCHHHHHHCCCCHHHHHHH
T ss_pred             HHHHHHh---hcCcccccccceeEEEcCCCcEEECcchhheeccCCCce-eecccCCCCCcCCcHHhcCCCCCcceeecc
Confidence            9999999   899999999999999999999999999999765543222 223356889999999999999999999999


Q ss_pred             HHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCC
Q 044022          156 FGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPE  234 (241)
Q Consensus       156 ~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~  234 (241)
                      ||+++|||+| |+.||....         ..+...... .+....  .+   ..        .++.+.+|+.+||+.||+
T Consensus       187 ~G~~l~el~t~g~~Pf~~~~---------~~~~~~~i~-~~~~~~--~p---~~--------~~~~l~~li~~cl~~dP~  243 (258)
T d1k2pa_         187 FGVLMWEIYSLGKMPYERFT---------NSETAEHIA-QGLRLY--RP---HL--------ASEKVYTIMYSCWHEKAD  243 (258)
T ss_dssp             HHHHHHHHHTTSCCTTTTSC---------HHHHHHHHH-TTCCCC--CC---TT--------CCHHHHHHHHHTTCSSGG
T ss_pred             cchhhHhHHhcCCCCCCCCC---------HHHHHHHHH-hCCCCC--Cc---cc--------ccHHHHHHHHHHccCCHh
Confidence            9999999998 899996522         222222222 221111  11   11        225789999999999999


Q ss_pred             CCCCCCC
Q 044022          235 DRPTMVD  241 (241)
Q Consensus       235 ~Rpt~~e  241 (241)
                      +|||++|
T Consensus       244 ~RPt~~e  250 (258)
T d1k2pa_         244 ERPTFKI  250 (258)
T ss_dssp             GSCCHHH
T ss_pred             HCcCHHH
Confidence            9999853

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=6.7e-47  Score=308.39  Aligned_cols=214  Identities=16%  Similarity=0.193  Sum_probs=167.9

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC--c---hHHHHHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP--L---PRLKIASDIV   75 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~--~---~~~~~~~~i~   75 (241)
                      ||++.... ....+.+.+|+++|++++|||||++++++..++..++|||||++|+|.+++....  .   ....++.||+
T Consensus        56 vK~i~~~~-~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~~gg~L~~~l~~~~~~l~e~~~~~i~~qi~  134 (350)
T d1koaa2          56 AKFVMTPH-ESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVC  134 (350)
T ss_dssp             EEEECCCS-HHHHHHHHHHHHHHHHTCCTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHTCTTSCBCHHHHHHHHHHHH
T ss_pred             EEEEcccc-hhhHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCCCHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence            45554332 2345678999999999999999999999999999999999999999999985432  2   4678999999


Q ss_pred             HHhchhhcCCCCCceeccCCCCCeeecC--CCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhh
Q 044022           76 NSLAYLHFGFPRPIVLRNFKTQNILFNE--ENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNV  153 (241)
Q Consensus        76 ~~l~~lh~~~~~~ivh~dl~~~nil~~~--~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di  153 (241)
                      .||.|||   +++++||||||+|||++.  ++.+||+|||++.........   ....||+.|+|||++.+..++.++||
T Consensus       135 ~aL~ylH---~~~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~~~~~---~~~~gT~~Y~aPEv~~~~~~~~~~Di  208 (350)
T d1koaa2         135 KGLCHMH---ENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSV---KVTTGTAEFAAPEVAEGKPVGYYTDM  208 (350)
T ss_dssp             HHHHHHH---HTTEECCCCCGGGEEESSTTSCCEEECCCTTCEECCTTSCE---EEECSCTTTCCHHHHHTCCBCHHHHH
T ss_pred             HHHHHHH---hcCCeeeeechhHeeeccCCCCeEEEeecchheeccccccc---ceecCcccccCHHHHcCCCCChhHhh
Confidence            9999999   999999999999999964  578999999999877654332   33578999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCC
Q 044022          154 FSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSP  233 (241)
Q Consensus       154 ~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p  233 (241)
                      |||||++|+|++|+.||...         ...+......... .  ........        ..++.+.+|+.+||+.||
T Consensus       209 wSlGvilyell~G~~Pf~~~---------~~~~~~~~i~~~~-~--~~~~~~~~--------~~s~~~~~li~~~L~~dP  268 (350)
T d1koaa2         209 WSVGVLSYILLSGLSPFGGE---------NDDETLRNVKSCD-W--NMDDSAFS--------GISEDGKDFIRKLLLADP  268 (350)
T ss_dssp             HHHHHHHHHHHHSSCSSCCS---------SHHHHHHHHHHTC-C--CSCCGGGG--------GCCHHHHHHHHHHCCSSG
T ss_pred             hhhhHHHHHHHhCCCCCCCC---------CHHHHHHHHHhCC-C--CCCccccc--------CCCHHHHHHHHHHccCCh
Confidence            99999999999999999541         1222222222111 1  11111111        123578999999999999


Q ss_pred             CCCCCCCC
Q 044022          234 EDRPTMVD  241 (241)
Q Consensus       234 ~~Rpt~~e  241 (241)
                      ++|||++|
T Consensus       269 ~~R~t~~e  276 (350)
T d1koaa2         269 NTRMTIHQ  276 (350)
T ss_dssp             GGSCCHHH
T ss_pred             hHCcCHHH
Confidence            99999854

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.9e-47  Score=306.40  Aligned_cols=215  Identities=23%  Similarity=0.332  Sum_probs=170.1

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----------------
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----------------   64 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----------------   64 (241)
                      ||.+.........++|.+|++++++++||||++++++|...+..++++||+++|+|.+++....                
T Consensus        48 vK~i~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~  127 (301)
T d1lufa_          48 VKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRA  127 (301)
T ss_dssp             EEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTCC---------------
T ss_pred             EEEEChhcChHHHHHHHHHHHHHHhcCCCCcccceeeeccCCceEEEEEecCCCcHHHHHHhcCccccccccccccchhh
Confidence            4666555555567889999999999999999999999999999999999999999999985321                


Q ss_pred             ------------chHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeeccccc
Q 044022           65 ------------LPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIG  132 (241)
Q Consensus        65 ------------~~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~  132 (241)
                                  ..++.++.|++.||+|||   +++++||||||+|||++.++.+||+|||+++...............+
T Consensus       128 ~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH---~~~ivHrDlKp~NILld~~~~~Kl~DFGls~~~~~~~~~~~~~~~~~  204 (301)
T d1lufa_         128 RVSSPGPPPLSCAEQLCIARQVAAGMAYLS---ERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAI  204 (301)
T ss_dssp             -------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCB
T ss_pred             hccccCCCCCCHHHHHHHHHHHHHHhhhcc---cCCeEeeEEcccceEECCCCcEEEccchhheeccCCccccccCCCCc
Confidence                        136789999999999999   89999999999999999999999999999986655444444445678


Q ss_pred             CCCccCcccccccCCCcchhhHHHHHHHHHHHhcC-cccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCc
Q 044022          133 TRGYSAPEYISICVLNEKSNVFSFGAFLFELLAGR-IHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPC  211 (241)
Q Consensus       133 ~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (241)
                      ++.|+|||.+.+..++.++||||||+++|||++|. +||...         ...+.... ...+.....+     ..   
T Consensus       205 ~~~y~aPE~~~~~~~t~ksDVwS~Gvvl~ell~~~~~p~~~~---------~~~e~~~~-v~~~~~~~~p-----~~---  266 (301)
T d1lufa_         205 PIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGM---------AHEEVIYY-VRDGNILACP-----EN---  266 (301)
T ss_dssp             CGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTS---------CHHHHHHH-HHTTCCCCCC-----TT---
T ss_pred             CcCcCCHHHHccCCCChhhhhccchhhHHHHHccCCCCCCCC---------CHHHHHHH-HHcCCCCCCC-----cc---
Confidence            89999999999999999999999999999999986 566442         12222222 2222222221     12   


Q ss_pred             hhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          212 IEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       212 ~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                           .++++.+|+.+||+.||++||||.|
T Consensus       267 -----~~~~~~~li~~cl~~~P~~RPt~~e  291 (301)
T d1lufa_         267 -----CPLELYNLMRLCWSKLPADRPSFCS  291 (301)
T ss_dssp             -----CCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             -----chHHHHHHHHHHcCCChhHCcCHHH
Confidence                 2257889999999999999999854

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-47  Score=301.89  Aligned_cols=212  Identities=20%  Similarity=0.278  Sum_probs=154.8

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC--c---hHHHHHHHHHH
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP--L---PRLKIASDIVN   76 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~--~---~~~~~~~~i~~   76 (241)
                      |...........+.|.+|++++++++|||||++++++. .+..++||||+++|+|.+++....  .   .++.++.||+.
T Consensus        41 k~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~~iv~E~~~~g~l~~~~~~~~~~l~~~~~~~~~~qi~~  119 (273)
T d1mp8a_          41 KTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLST  119 (273)
T ss_dssp             EECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCEEEEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHH
T ss_pred             EEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe-cCeEEEEEEeccCCcHHhhhhccCCCCCHHHHHHHHHHHHH
Confidence            34433344455678999999999999999999999995 567899999999999999865432  1   47789999999


Q ss_pred             HhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHH
Q 044022           77 SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSF  156 (241)
Q Consensus        77 ~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~  156 (241)
                      ||.|||   +++++||||||+||+++.++.+||+|||+++........ ......||+.|+|||++.+..++.++|||||
T Consensus       120 gl~ylH---~~~iiHrDlKp~NIll~~~~~~Kl~DfG~a~~~~~~~~~-~~~~~~gt~~y~apE~l~~~~~~~~~DiwSl  195 (273)
T d1mp8a_         120 ALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYY-KASKGKLPIKWMAPESINFRRFTSASDVWMF  195 (273)
T ss_dssp             HHHHHH---HTTCCCSCCSGGGEEEEETTEEEECC--------------------CCGGGCCHHHHHHCCCSHHHHHHHH
T ss_pred             Hhhhhc---ccCeeccccchhheeecCCCcEEEccchhheeccCCcce-eccceecCcccchhhHhccCCCCCccccccc
Confidence            999999   999999999999999999999999999999865543222 2234568899999999999999999999999


Q ss_pred             HHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCC
Q 044022          157 GAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPED  235 (241)
Q Consensus       157 G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~  235 (241)
                      |+++|||++ |.+||......         +..... ..+....     +...        .++.+.+|+.+||+.||++
T Consensus       196 Gvil~e~lt~g~~P~~~~~~~---------~~~~~i-~~~~~~~-----~~~~--------~~~~~~~li~~cl~~dp~~  252 (273)
T d1mp8a_         196 GVCMWEILMHGVKPFQGVKNN---------DVIGRI-ENGERLP-----MPPN--------CPPTLYSLMTKCWAYDPSR  252 (273)
T ss_dssp             HHHHHHHHTTSCCTTTTCCGG---------GHHHHH-HTTCCCC-----CCTT--------CCHHHHHHHHHHTCSSGGG
T ss_pred             hHHHHHHHhcCCCCCCCCCHH---------HHHHHH-HcCCCCC-----CCCC--------CCHHHHHHHHHHcCCCHhH
Confidence            999999998 89998652211         112221 1221111     1122        2257899999999999999


Q ss_pred             CCCCCC
Q 044022          236 RPTMVD  241 (241)
Q Consensus       236 Rpt~~e  241 (241)
                      |||++|
T Consensus       253 Rps~~e  258 (273)
T d1mp8a_         253 RPRFTE  258 (273)
T ss_dssp             SCCHHH
T ss_pred             CcCHHH
Confidence            999854

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=1.2e-46  Score=307.03  Aligned_cols=214  Identities=18%  Similarity=0.207  Sum_probs=167.7

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC--c---hHHHHHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP--L---PRLKIASDIV   75 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~--~---~~~~~~~~i~   75 (241)
                      ||++..... .....+.+|+++|++|+|||||+++++|..++.+++|||||++|+|.+++....  .   ....++.||+
T Consensus        59 iK~i~~~~~-~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~~gg~L~~~~~~~~~~l~e~~~~~i~~qi~  137 (352)
T d1koba_          59 AKFINTPYP-LDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQAC  137 (352)
T ss_dssp             EEEEECCSH-HHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEECCCCCBHHHHTTCTTCCBCHHHHHHHHHHHH
T ss_pred             EEEECCcch-hHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCChHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence            455543322 345678899999999999999999999999999999999999999998876542  2   4678999999


Q ss_pred             HHhchhhcCCCCCceeccCCCCCeeec--CCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhh
Q 044022           76 NSLAYLHFGFPRPIVLRNFKTQNILFN--EENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNV  153 (241)
Q Consensus        76 ~~l~~lh~~~~~~ivh~dl~~~nil~~--~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di  153 (241)
                      .||.|||   +++|+||||||+|||++  .++.+||+|||++.........   ....||+.|+|||++.+..++.++||
T Consensus       138 ~aL~ylH---~~~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~Di  211 (352)
T d1koba_         138 EGLKHMH---EHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIV---KVTTATAEFAAPEIVDREPVGFYTDM  211 (352)
T ss_dssp             HHHHHHH---HTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSCE---EEECSSGGGCCHHHHTTCCBCHHHHH
T ss_pred             HHHHHHH---HCCeeecccccccccccccCCCeEEEeecccceecCCCCce---eeccCcccccCHHHHcCCCCCCccch
Confidence            9999999   99999999999999998  5789999999999887654332   33478999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCC
Q 044022          154 FSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSP  233 (241)
Q Consensus       154 ~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p  233 (241)
                      |||||++|+|++|+.||...         ...+....... ... . .......        ..++.+.+|+.+||+.||
T Consensus       212 wSlGvilyelltG~~Pf~~~---------~~~~~~~~i~~-~~~-~-~~~~~~~--------~~s~~~~~li~~~L~~dp  271 (352)
T d1koba_         212 WAIGVLGYVLLSGLSPFAGE---------DDLETLQNVKR-CDW-E-FDEDAFS--------SVSPEAKDFIKNLLQKEP  271 (352)
T ss_dssp             HHHHHHHHHHHHSCCSSCCS---------SHHHHHHHHHH-CCC-C-CCSSTTT--------TSCHHHHHHHHTTSCSSG
T ss_pred             HHHHHHHHHHHhCCCCCCCC---------CHHHHHHHHHh-CCC-C-CCccccc--------CCCHHHHHHHHHHccCCh
Confidence            99999999999999999542         11222222211 111 0 1111111        122578899999999999


Q ss_pred             CCCCCCCC
Q 044022          234 EDRPTMVD  241 (241)
Q Consensus       234 ~~Rpt~~e  241 (241)
                      ++|||++|
T Consensus       272 ~~R~s~~e  279 (352)
T d1koba_         272 RKRLTVHD  279 (352)
T ss_dssp             GGSCCHHH
T ss_pred             hHCcCHHH
Confidence            99999753

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.7e-47  Score=301.80  Aligned_cols=204  Identities=20%  Similarity=0.264  Sum_probs=163.4

Q ss_pred             cHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCCC
Q 044022           12 TYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ..+.+.+|+++|++++|||||+++++|.+.+..++|||||++|+|.+++.....    ....++.|++.||.|||   ++
T Consensus        56 ~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv~E~~~gg~L~~~i~~~~~l~~~~~~~~~~qi~~al~yLH---~~  132 (293)
T d1jksa_          56 SREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLH---SL  132 (293)
T ss_dssp             CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---HT
T ss_pred             HHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcCCCccccchhccccccchhHHHHHHHHHHHHHHhhh---hc
Confidence            467899999999999999999999999999999999999999999999865422    46789999999999999   99


Q ss_pred             CceeccCCCCCeeecCCC----CeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHH
Q 044022           88 PIVLRNFKTQNILFNEEN----VAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFEL  163 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~----~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~  163 (241)
                      +++||||||+|||++.++    .+|++|||++.........   ....+|+.|+|||++.+..++.++|||||||++|+|
T Consensus       133 ~ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a~~~~~~~~~---~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvilyel  209 (293)
T d1jksa_         133 QIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEF---KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYIL  209 (293)
T ss_dssp             TEECCCCSGGGEEESCSSSSSCCEEECCCTTCEECTTSCBC---SCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHH
T ss_pred             ceeecccccceEEEecCCCcccceEecchhhhhhcCCCccc---cccCCCCcccCHHHHcCCCCCCcccchhhhHHHHHH
Confidence            999999999999998776    5999999999876544322   335689999999999988999999999999999999


Q ss_pred             HhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          164 LAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       164 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ++|+.||....         ..+......... .  ........        ..+..+.+|+.+||+.||++|||++|
T Consensus       210 l~g~~Pf~~~~---------~~~~~~~i~~~~-~--~~~~~~~~--------~~s~~~~~li~~~L~~dP~~R~s~~e  267 (293)
T d1jksa_         210 LSGASPFLGDT---------KQETLANVSAVN-Y--EFEDEYFS--------NTSALAKDFIRRLLVKDPKKRMTIQD  267 (293)
T ss_dssp             HHSSCSSCCSS---------HHHHHHHHHTTC-C--CCCHHHHT--------TSCHHHHHHHHTTSCSSGGGSCCHHH
T ss_pred             HcCCCCCCCCC---------HHHHHHHHHhcC-C--CCCchhcC--------CCCHHHHHHHHHHccCChhHCcCHHH
Confidence            99999996421         122222221111 0  00111111        22367889999999999999999854

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-47  Score=306.48  Aligned_cols=213  Identities=20%  Similarity=0.259  Sum_probs=161.2

Q ss_pred             cccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc-----hHHHHHHHHHH
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL-----PRLKIASDIVN   76 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~-----~~~~~~~~i~~   76 (241)
                      |.+.........++|.+|++++++++|||||+++|+|.++ ..+++++++.+|+|.+++.....     .++.++.||+.
T Consensus        44 K~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~-~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~  122 (317)
T d1xkka_          44 KELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAK  122 (317)
T ss_dssp             EEECC----CTHHHHHHHHHHHHHCCCTTBCCEEEEEESS-SEEEEEECCTTCBHHHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred             EEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC-CeeEEEEeccCCcccccccccccCCCHHHHHHHHHHHHH
Confidence            4444444445678899999999999999999999999765 46788899999999988764421     46789999999


Q ss_pred             HhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHH
Q 044022           77 SLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSF  156 (241)
Q Consensus        77 ~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~  156 (241)
                      ||.|||   +++|+||||||+|||++.++.+||+|||++................||+.|+|||++.+..++.++|||||
T Consensus       123 gl~yLH---~~~iiHrDlKp~NIll~~~~~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDvwS~  199 (317)
T d1xkka_         123 GMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSY  199 (317)
T ss_dssp             HHHHHH---HTTCCCSCCCGGGEEEEETTEEEECCCSHHHHTTTTCC--------CCTTTSCHHHHHHCCCCHHHHHHHH
T ss_pred             HHHHHH---HcCcccCcchhhcceeCCCCCeEeeccccceecccccccccccccccCccccChHHHhcCCCChhhhhhhH
Confidence            999999   89999999999999999999999999999987655444333344568999999999999999999999999


Q ss_pred             HHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCC
Q 044022          157 GAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPED  235 (241)
Q Consensus       157 G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~  235 (241)
                      |+++|||+| |.+||......         +. ......+.....+     .        ..++.+.+|+.+||+.||++
T Consensus       200 Gvil~el~t~g~~p~~~~~~~---------~~-~~~i~~~~~~~~p-----~--------~~~~~~~~li~~cl~~dP~~  256 (317)
T d1xkka_         200 GVTVWELMTFGSKPYDGIPAS---------EI-SSILEKGERLPQP-----P--------ICTIDVYMIMVKCWMIDADS  256 (317)
T ss_dssp             HHHHHHHHTTSCCTTTTSCGG---------GH-HHHHHHTCCCCCC-----T--------TBCHHHHHHHHHHTCSSGGG
T ss_pred             HHHHHHHHHCCCCCCCCCCHH---------HH-HHHHHcCCCCCCC-----c--------ccCHHHHHHHHHhCCCChhh
Confidence            999999998 78888542111         11 1112222111111     1        22357899999999999999


Q ss_pred             CCCCCC
Q 044022          236 RPTMVD  241 (241)
Q Consensus       236 Rpt~~e  241 (241)
                      |||+.|
T Consensus       257 RPs~~e  262 (317)
T d1xkka_         257 RPKFRE  262 (317)
T ss_dssp             SCCHHH
T ss_pred             CcCHHH
Confidence            999853

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-45  Score=298.93  Aligned_cols=210  Identities=18%  Similarity=0.237  Sum_probs=167.7

Q ss_pred             Cccccccc--ccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHH
Q 044022            1 MKFYGHEY--HRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDI   74 (241)
Q Consensus         1 iK~~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i   74 (241)
                      ||++.+..  .....+++.+|+.+|++++||||+++++++.+.+.+|+|||||++|+|.+++.....    ....++.|+
T Consensus        35 iK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~iv~ey~~gg~L~~~~~~~~~~~e~~~~~~~~qi  114 (337)
T d1o6la_          35 MKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGAEI  114 (337)
T ss_dssp             EEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred             EEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeeccccccccceeccCCCchhhhhhcccCCcHHHHHHHHHHH
Confidence            35554332  234577899999999999999999999999999999999999999999999875422    467789999


Q ss_pred             HHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhH
Q 044022           75 VNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVF  154 (241)
Q Consensus        75 ~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~  154 (241)
                      +.||.|||   +++|+||||||+|||++.++.+||+|||+++.......  .....+||+.|+|||++.+..++.++|||
T Consensus       115 l~al~ylH---~~~iiHRDlKP~NILl~~~g~vkl~DFG~a~~~~~~~~--~~~~~~GT~~Y~aPE~~~~~~y~~~~Diw  189 (337)
T d1o6la_         115 VSALEYLH---SRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGA--TMKTFCGTPEYLAPEVLEDNDYGRAVDWW  189 (337)
T ss_dssp             HHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTC--CBCCCEECGGGCCGGGGSSSCBCTTHHHH
T ss_pred             hhhhhhhh---hcCccccccCHHHeEecCCCCEEEeecccccccccCCc--ccccceeCHHHhhhhhccCCCCChhhccc
Confidence            99999999   99999999999999999999999999999986544322  22346799999999999999999999999


Q ss_pred             HHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCC
Q 044022          155 SFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPE  234 (241)
Q Consensus       155 s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~  234 (241)
                      |+||++|+|++|++||...         ...+...... .... ..     ...        .++.+.+|+.+||+.||+
T Consensus       190 SlGvilyeml~G~~pf~~~---------~~~~~~~~i~-~~~~-~~-----p~~--------~s~~~~dli~~~L~~dP~  245 (337)
T d1o6la_         190 GLGVVMYEMMCGRLPFYNQ---------DHERLFELIL-MEEI-RF-----PRT--------LSPEAKSLLAGLLKKDPK  245 (337)
T ss_dssp             HHHHHHHHHHHSSCSSCCS---------SHHHHHHHHH-HCCC-CC-----CTT--------SCHHHHHHHHHHTCSSTT
T ss_pred             chhhHHHHHHHCCCCCCCc---------CHHHHHHHHh-cCCC-CC-----Ccc--------CCHHHHHHHHhhccCCch
Confidence            9999999999999999652         1122222221 1111 11     111        225688999999999999


Q ss_pred             CCCCC
Q 044022          235 DRPTM  239 (241)
Q Consensus       235 ~Rpt~  239 (241)
                      +||+.
T Consensus       246 ~R~~~  250 (337)
T d1o6la_         246 QRLGG  250 (337)
T ss_dssp             TSTTC
T ss_pred             hhccc
Confidence            99963

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-45  Score=297.09  Aligned_cols=205  Identities=21%  Similarity=0.287  Sum_probs=165.2

Q ss_pred             Cccccccc--ccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHH
Q 044022            1 MKFYGHEY--HRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDI   74 (241)
Q Consensus         1 iK~~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i   74 (241)
                      ||++..+.  .....+.+.+|+.++++++|||||++++++...+..++||||++||+|..++.....    ....++.||
T Consensus        34 vK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~~gg~l~~~~~~~~~~~~~~~~~~~~qi  113 (316)
T d1fota_          34 MKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKSQRFPNPVAKFYAAEV  113 (316)
T ss_dssp             EEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHTSSCCHHHHHHHHHHH
T ss_pred             EEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeCCeeeeEeeecCCccccccccccccccccHHHHHHHHH
Confidence            45554332  234567899999999999999999999999999999999999999999998865532    356788999


Q ss_pred             HHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhH
Q 044022           75 VNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVF  154 (241)
Q Consensus        75 ~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~  154 (241)
                      +.||.|||   +++|+||||||+|||++.++.+||+|||++.......     ....||+.|+|||++.+..++.++|||
T Consensus       114 ~~al~~lH---~~~iiHrDiKp~NILl~~~g~vkL~DFG~a~~~~~~~-----~~~~Gt~~Y~APE~l~~~~y~~~~Diw  185 (316)
T d1fota_         114 CLALEYLH---SKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVT-----YTLCGTPDYIAPEVVSTKPYNKSIDWW  185 (316)
T ss_dssp             HHHHHHHH---TTTEECCCCCGGGEEECTTSCEEECCCSSCEECSSCB-----CCCCSCTTTCCHHHHTTCCBCTTHHHH
T ss_pred             HHhhhhhc---cCcEEccccCchheeEcCCCCEEEecCccceEecccc-----ccccCcccccCHHHHcCCCCCchhhcc
Confidence            99999999   9999999999999999999999999999998765432     345799999999999998999999999


Q ss_pred             HHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCC
Q 044022          155 SFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPE  234 (241)
Q Consensus       155 s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~  234 (241)
                      |+||++|+|++|+.||...         ...+....... +..      ...+.        .++.+.+++.+||..||.
T Consensus       186 SlGvilyemltG~~Pf~~~---------~~~~~~~~i~~-~~~------~~p~~--------~s~~~~~li~~~L~~dp~  241 (316)
T d1fota_         186 SFGILIYEMLAGYTPFYDS---------NTMKTYEKILN-AEL------RFPPF--------FNEDVKDLLSRLITRDLS  241 (316)
T ss_dssp             HHHHHHHHHHHSSCTTCCS---------SHHHHHHHHHH-CCC------CCCTT--------SCHHHHHHHHHHTCSCTT
T ss_pred             ccchhHHHHHhCCCCCCCc---------CHHHHHHHHHc-CCC------CCCCC--------CCHHHHHHHHHHhhhCHH
Confidence            9999999999999999652         11222222211 111      11111        125688999999999999


Q ss_pred             CCC
Q 044022          235 DRP  237 (241)
Q Consensus       235 ~Rp  237 (241)
                      +|+
T Consensus       242 ~R~  244 (316)
T d1fota_         242 QRL  244 (316)
T ss_dssp             TCT
T ss_pred             hcc
Confidence            997

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-46  Score=297.82  Aligned_cols=215  Identities=20%  Similarity=0.329  Sum_probs=162.6

Q ss_pred             Cccccccc--ccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----chHHHHHHH
Q 044022            1 MKFYGHEY--HRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASD   73 (241)
Q Consensus         1 iK~~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~   73 (241)
                      ||++..+.  .....++|.+|++++++++|||||+++|+|.+ +..++||||+++|++.+++....     ..++.++.|
T Consensus        41 iK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~-~~~~lv~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~q  119 (273)
T d1u46a_          41 VKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT-PPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQ  119 (273)
T ss_dssp             EEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHH
T ss_pred             EEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee-cchheeeeeecCcchhhhhhcccCCCCHHHHHHHHHH
Confidence            35554332  23446789999999999999999999999965 46789999999999998875432     246789999


Q ss_pred             HHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcce-eecccccCCCccCcccccccCCCcchh
Q 044022           74 IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHI-TTDRVIGTRGYSAPEYISICVLNEKSN  152 (241)
Q Consensus        74 i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~-~~~~~~~~~~~~aPE~~~~~~~~~~~D  152 (241)
                      |+.||.|||   +++|+||||||+||+++.++.+||+|||++.......... ......++..|+|||.+.+..++.++|
T Consensus       120 i~~gl~ylH---~~~iiHrDikp~NIll~~~~~vkl~DfGl~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~D  196 (273)
T d1u46a_         120 VAEGMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASD  196 (273)
T ss_dssp             HHHHHHHHH---HTTEECSCCCGGGEEEEETTEEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHH
T ss_pred             HHHHHHHhh---hCCEeeeeecHHHhccccccceeeccchhhhhcccCCCcceecCccccCcccCCHHHHhCCCCCcchh
Confidence            999999999   8999999999999999999999999999998775543322 223445778899999999999999999


Q ss_pred             hHHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccC
Q 044022          153 VFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNN  231 (241)
Q Consensus       153 i~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~  231 (241)
                      |||||+++|||++ |..||...         ...+........+...+.     ....        +..+.+|+.+||+.
T Consensus       197 i~S~Gvil~emlt~G~~Pf~~~---------~~~~~~~~i~~~~~~~~~-----~~~~--------~~~l~~li~~cl~~  254 (273)
T d1u46a_         197 TWMFGVTLWEMFTYGQEPWIGL---------NGSQILHKIDKEGERLPR-----PEDC--------PQDIYNVMVQCWAH  254 (273)
T ss_dssp             HHHHHHHHHHHHTTSCCTTTTC---------CHHHHHHHHHTSCCCCCC-----CTTC--------CHHHHHHHHHHTCS
T ss_pred             hhhhHHHHHHHHhCCCCCCCCc---------CHHHHHHHHHhCCCCCCC-----cccc--------cHHHHHHHHHHcCC
Confidence            9999999999998 89999542         223333333333221111     1122        25788999999999


Q ss_pred             CCCCCCCCCC
Q 044022          232 SPEDRPTMVD  241 (241)
Q Consensus       232 ~p~~Rpt~~e  241 (241)
                      ||++|||+.|
T Consensus       255 dp~~RPt~~e  264 (273)
T d1u46a_         255 KPEDRPTFVA  264 (273)
T ss_dssp             SGGGSCCHHH
T ss_pred             ChhHCcCHHH
Confidence            9999999753

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-46  Score=299.36  Aligned_cols=215  Identities=21%  Similarity=0.331  Sum_probs=173.2

Q ss_pred             CcccccccccccHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC---------------
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP---------------   64 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~---------------   64 (241)
                      ||.+..+.......++.+|+..+.++ +|||||+++++|.+++..++||||+++|+|.+++....               
T Consensus        50 vK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~~~~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~  129 (299)
T d1fgka_          50 VKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPE  129 (299)
T ss_dssp             EECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEECCCTTCBHHHHHHTTSCC------------C
T ss_pred             EEEECcccChHHHHHHHHHHHHHHHhcCCCeEEecccccccCCeEEEEEEccCCCcHHHHHHhhcCCccccccccccCcc
Confidence            46666666656678899999999998 89999999999999999999999999999999986431               


Q ss_pred             -----chHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCc
Q 044022           65 -----LPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAP  139 (241)
Q Consensus        65 -----~~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aP  139 (241)
                           ..++.++.||+.||.|||   +.+++||||||+|||++.++.+||+|||.+................+++.|+||
T Consensus       130 ~~l~~~~~~~~~~qi~~al~ylH---~~~ivHrDiKp~NiLl~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  206 (299)
T d1fgka_         130 EQLSSKDLVSCAYQVARGMEYLA---SKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAP  206 (299)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTCCEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCH
T ss_pred             ccCCHHHHHHHHHHHHHHHHHhh---hCCEEeeeecccceeecCCCCeEeccchhhccccccccccccccCCCChhhhhh
Confidence                 146789999999999999   999999999999999999999999999999877655444444556788999999


Q ss_pred             ccccccCCCcchhhHHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHH
Q 044022          140 EYISICVLNEKSNVFSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQL  218 (241)
Q Consensus       140 E~~~~~~~~~~~Di~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (241)
                      |.+.+..++.++||||||+++|||++ |.+||....         ..+ +......+.....+     ..        .+
T Consensus       207 E~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~~~~---------~~~-~~~~i~~~~~~~~p-----~~--------~~  263 (299)
T d1fgka_         207 EALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP---------VEE-LFKLLKEGHRMDKP-----SN--------CT  263 (299)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC---------HHH-HHHHHHTTCCCCCC-----SS--------CC
T ss_pred             hHhcCCCCCchhhhHHhHHHHHHhccCCCCCCCCCC---------HHH-HHHHHHcCCCCCCC-----cc--------ch
Confidence            99999999999999999999999998 688885411         112 22222223222211     12        22


Q ss_pred             HHHHHHHHHhccCCCCCCCCCCC
Q 044022          219 HASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       219 ~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +.+.+|+.+||+.||++||||+|
T Consensus       264 ~~l~~li~~cl~~dP~~Rps~~e  286 (299)
T d1fgka_         264 NELYMMMRDCWHAVPSQRPTFKQ  286 (299)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             HHHHHHHHHHccCCHhHCcCHHH
Confidence            57899999999999999999864

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-46  Score=297.08  Aligned_cols=212  Identities=21%  Similarity=0.233  Sum_probs=158.3

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCC---C---chHHHHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGA---P---LPRLKIASDI   74 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~---~---~~~~~~~~~i   74 (241)
                      ||++....  ...+.|.+|+.++++++|||||+++++|. .+..++||||+++|+|..++...   .   ..++.++.+|
T Consensus        46 iK~l~~~~--~~~~~~~~E~~~l~~l~h~nIv~~~g~~~-~~~~~lv~Ey~~~g~l~~~~~~~~~~~l~~~~~~~i~~~i  122 (285)
T d1fmka3          46 IKTLKPGT--MSPEAFLQEAQVMKKLRHEKLVQLYAVVS-EEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQI  122 (285)
T ss_dssp             EEECCTTS--SCHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHH
T ss_pred             EEEECccc--CCHHHHHHHHHHHHhcccCCEeEEEEEEe-cCCeEEEEEecCCCchhhhhhhcccccchHHHHHHHHHHH
Confidence            46654332  34678999999999999999999999985 45679999999999999887542   1   2578999999


Q ss_pred             HHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhH
Q 044022           75 VNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVF  154 (241)
Q Consensus        75 ~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~  154 (241)
                      +.||+|||   +.+++||||||+|||++.++.+||+|||+++........ ......+|+.|+|||++....++.++|||
T Consensus       123 ~~gl~~LH---~~~ivH~DlKp~NIll~~~~~~kl~DfGla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~ksDI~  198 (285)
T d1fmka3         123 ASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYT-ARQGAKFPIKWTAPEAALYGRFTIKSDVW  198 (285)
T ss_dssp             HHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCCTTC---------------CCGGGSCHHHHHHCCCCHHHHHH
T ss_pred             HHHHHHHh---hhheecccccceEEEECCCCcEEEcccchhhhccCCCce-eeccccccccccChHHHhCCCCCcHHhhh
Confidence            99999999   899999999999999999999999999999765433222 22345689999999999999999999999


Q ss_pred             HHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCC
Q 044022          155 SFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPE  234 (241)
Q Consensus       155 s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~  234 (241)
                      |||+++|||++|..|+....        ...+...... .+...+.     ..        ..++.+.+++.+||+.||+
T Consensus       199 S~Giil~el~t~~~p~~~~~--------~~~~~~~~i~-~~~~~~~-----~~--------~~~~~l~~li~~cl~~dP~  256 (285)
T d1fmka3         199 SFGILLTELTTKGRVPYPGM--------VNREVLDQVE-RGYRMPC-----PP--------ECPESLHDLMCQCWRKEPE  256 (285)
T ss_dssp             HHHHHHHHHHTTTCCSSTTC--------CHHHHHHHHH-TTCCCCC-----CT--------TSCHHHHHHHHHHTCSSGG
T ss_pred             cchHHHHHHHhCCCCCCCCC--------CHHHHHHHHH-hcCCCCC-----Cc--------ccCHHHHHHHHHHcccCHh
Confidence            99999999999766654311        1222222221 1211111     11        2235789999999999999


Q ss_pred             CCCCCCC
Q 044022          235 DRPTMVD  241 (241)
Q Consensus       235 ~Rpt~~e  241 (241)
                      +|||++|
T Consensus       257 ~Rps~~~  263 (285)
T d1fmka3         257 ERPTFEY  263 (285)
T ss_dssp             GSCCHHH
T ss_pred             HCcCHHH
Confidence            9999853

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-46  Score=299.29  Aligned_cols=216  Identities=19%  Similarity=0.306  Sum_probs=159.4

Q ss_pred             CcccccccccccHHHHHHHHHHHHhc-CCCcccceeeeeeeC-CcceEEEEecCCCCHHHhhcCCC--------------
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQM-SHNHILKRIGCCLQT-PIPILVFQSVEYGTLRDCIFGAP--------------   64 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~-~~~~lv~e~~~~~sL~~~l~~~~--------------   64 (241)
                      ||.+.........+.+.+|+.++.++ +|+|||.+++++... +..++|||||++|+|.+++....              
T Consensus        48 vK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~  127 (299)
T d1ywna1          48 VKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLY  127 (299)
T ss_dssp             EEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTSCCEEEEECCTTCBHHHHHHHTGGGBCC---------
T ss_pred             EEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEeeeeeccCCCeEEEEEEecCCCcHHHHHHhccccccccccchhhhh
Confidence            35555444555677888999998888 688999999988764 46899999999999999985421              


Q ss_pred             ------chHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccC
Q 044022           65 ------LPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA  138 (241)
Q Consensus        65 ------~~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~a  138 (241)
                            ..++.++.||+.||.|||   +++|+||||||+|||++.++.+||+|||+++...............||+.|+|
T Consensus       128 ~~~l~~~~~~~~~~qi~~gl~ylH---~~~ivHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~A  204 (299)
T d1ywna1         128 KDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMA  204 (299)
T ss_dssp             --CBCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECGGGCEEECC------CCSCTTSCCTTSCCCGGGGCC
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHH---hCCCcCCcCCccceeECCCCcEEEccCcchhhccccccccccCceeeCccccc
Confidence                  136789999999999999   89999999999999999999999999999987655544444455679999999


Q ss_pred             cccccccCCCcchhhHHHHHHHHHHHhcC-cccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHH
Q 044022          139 PEYISICVLNEKSNVFSFGAFLFELLAGR-IHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQ  217 (241)
Q Consensus       139 PE~~~~~~~~~~~Di~s~G~~~~~~~~g~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (241)
                      ||++.+..++.++|||||||++|||++|. +||....         ..+........+.....++             ..
T Consensus       205 PE~l~~~~~~~~sDiwS~Gvil~ellt~~~~p~~~~~---------~~~~~~~~~~~~~~~~~~~-------------~~  262 (299)
T d1ywna1         205 PETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK---------IDEEFCRRLKEGTRMRAPD-------------YT  262 (299)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC---------CSHHHHHHHHHTCCCCCCT-------------TC
T ss_pred             hhHhhcCCCCcccceeehHHHHHHHHhCCCCCCCCCC---------HHHHHHHHHhcCCCCCCCc-------------cC
Confidence            99999999999999999999999999875 5664311         1111222222222222111             12


Q ss_pred             HHHHHHHHHHhccCCCCCCCCCCC
Q 044022          218 LHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       218 ~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ++.+.+++.+||+.||++|||++|
T Consensus       263 ~~~l~~li~~cl~~dP~~Rpt~~e  286 (299)
T d1ywna1         263 TPEMYQTMLDCWHGEPSQRPTFSE  286 (299)
T ss_dssp             CHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             CHHHHHHHHHHcCCChhHCcCHHH
Confidence            257899999999999999999864

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.8e-46  Score=298.21  Aligned_cols=216  Identities=19%  Similarity=0.264  Sum_probs=167.1

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeee-CCcceEEEEecCCCCHHHhhcCCCc-----hHHHHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQ-TPIPILVFQSVEYGTLRDCIFGAPL-----PRLKIASDI   74 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~lv~e~~~~~sL~~~l~~~~~-----~~~~~~~~i   74 (241)
                      ||.+.........++|.+|++++++++||||++++|++.. ++..++|||||++|+|.+++.....     .++.++.|+
T Consensus        60 vK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~E~~~~g~l~~~~~~~~~~~~~~~~~~i~~qi  139 (311)
T d1r0pa_          60 VKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQV  139 (311)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEEEEECCTTCBHHHHHHCTTCCCBHHHHHHHHHHH
T ss_pred             EEEECcccCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEEEEEEeecCchhhhhccccccchHHHHHHHHHHH
Confidence            4555544555567889999999999999999999999876 4578999999999999998875532     467899999


Q ss_pred             HHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcc--eeecccccCCCccCcccccccCCCcchh
Q 044022           75 VNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH--ITTDRVIGTRGYSAPEYISICVLNEKSN  152 (241)
Q Consensus        75 ~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~--~~~~~~~~~~~~~aPE~~~~~~~~~~~D  152 (241)
                      +.||.|||   +.+|+||||||+|||++.++.+||+|||+++........  .......||..|+|||.+....++.++|
T Consensus       140 a~gL~~lH---~~~iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksD  216 (311)
T d1r0pa_         140 AKGMKFLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSD  216 (311)
T ss_dssp             HHHHHHHH---HTTCCCSCCSGGGEEECTTCCEEECSSGGGCCTTTTTCCCTTCTTCSSCCGGGSCHHHHHHCCCCHHHH
T ss_pred             HHhhhhhc---ccCcccCCccHHhEeECCCCCEEEecccchhhccccccccceecccccccccccChHHHhcCCCCChhH
Confidence            99999999   899999999999999999999999999999876543221  1222346889999999999999999999


Q ss_pred             hHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCC
Q 044022          153 VFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNS  232 (241)
Q Consensus       153 i~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~  232 (241)
                      |||||+++|||++|..||......        .+...... .+.....     +..        .++.+.+|+.+||+.|
T Consensus       217 I~SfGivl~El~t~~~p~~~~~~~--------~~~~~~i~-~g~~~~~-----p~~--------~~~~l~~li~~cl~~d  274 (311)
T d1r0pa_         217 VWSFGVLLWELMTRGAPPYPDVNT--------FDITVYLL-QGRRLLQ-----PEY--------CPDPLYEVMLKCWHPK  274 (311)
T ss_dssp             HHHHHHHHHHHHTTSCCSCC--------------CHHHHH-TTCCCCC-----CTT--------CCHHHHHHHHHHTCSS
T ss_pred             hhhhHHHHHHHHHCCCCCCCCCCH--------HHHHHHHH-cCCCCCC-----ccc--------CcHHHHHHHHHHcCCC
Confidence            999999999999988887542111        11111111 1211111     111        2257889999999999


Q ss_pred             CCCCCCCCC
Q 044022          233 PEDRPTMVD  241 (241)
Q Consensus       233 p~~Rpt~~e  241 (241)
                      |++|||+.|
T Consensus       275 P~~RPs~~e  283 (311)
T d1r0pa_         275 AEMRPSFSE  283 (311)
T ss_dssp             GGGSCCHHH
T ss_pred             HhHCcCHHH
Confidence            999999854

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-46  Score=293.75  Aligned_cols=207  Identities=22%  Similarity=0.303  Sum_probs=154.7

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeee-CCcceEEEEecCCCCHHHhhcCCC------chHHHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQ-TPIPILVFQSVEYGTLRDCIFGAP------LPRLKIASD   73 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~lv~e~~~~~sL~~~l~~~~------~~~~~~~~~   73 (241)
                      ||.+..+   ...++|.+|++++++++|||||+++|+|.+ .+.+++||||+++|+|.+++....      ..++.++.|
T Consensus        35 vK~i~~~---~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~  111 (262)
T d1byga_          35 VKCIKND---ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLD  111 (262)
T ss_dssp             EEECCCC---C--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             EEEECcH---HHHHHHHHHHHHHHhCCCCCEeeEEEEEEecCCcEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHH
Confidence            4555332   345789999999999999999999999865 456899999999999999986431      247889999


Q ss_pred             HHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhh
Q 044022           74 IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNV  153 (241)
Q Consensus        74 i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di  153 (241)
                      |+.||.|||   +.+++||||||+|||++.++.+|++|||.++......     ....++..|+|||++.+..+++++||
T Consensus       112 i~~al~ylH---~~~ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~~~~~-----~~~~~~~~y~aPE~l~~~~~t~~sDI  183 (262)
T d1byga_         112 VCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ-----DTGKLPVKWTAPEALREKKFSTKSDV  183 (262)
T ss_dssp             HHHHHHHHH---HTTCCCSCCSGGGEEECTTSCEEECCCCC-----------------CCTTTSCHHHHHHCCCCHHHHH
T ss_pred             HHhhccccc---cCceeccccchHhheecCCCCEeecccccceecCCCC-----ccccccccCCChHHHhCCCCChHHHH
Confidence            999999999   8999999999999999999999999999997654332     23457889999999998999999999


Q ss_pred             HHHHHHHHHHHh-cCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCC
Q 044022          154 FSFGAFLFELLA-GRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNS  232 (241)
Q Consensus       154 ~s~G~~~~~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~  232 (241)
                      ||||+++|||++ |++||.....         .+..... ..+...     .+....        ++.+.+|+.+||+.|
T Consensus       184 wSfG~il~el~t~~~~p~~~~~~---------~~~~~~i-~~~~~~-----~~~~~~--------~~~~~~li~~cl~~d  240 (262)
T d1byga_         184 WSFGILLWEIYSFGRVPYPRIPL---------KDVVPRV-EKGYKM-----DAPDGC--------PPAVYEVMKNCWHLD  240 (262)
T ss_dssp             HHHHHHHHHHHTTSCCSCTTSCG---------GGHHHHH-TTTCCC-----CCCTTC--------CHHHHHHHHHHTCSS
T ss_pred             HhHHHHHHHHHHCCCCCCCCCCH---------HHHHHHH-HcCCCC-----CCCccC--------CHHHHHHHHHHcccC
Confidence            999999999998 6877754211         1122222 112111     112222        257889999999999


Q ss_pred             CCCCCCCCC
Q 044022          233 PEDRPTMVD  241 (241)
Q Consensus       233 p~~Rpt~~e  241 (241)
                      |++|||+.|
T Consensus       241 P~~Rps~~~  249 (262)
T d1byga_         241 AAMRPSFLQ  249 (262)
T ss_dssp             GGGSCCHHH
T ss_pred             HhHCcCHHH
Confidence            999999853

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.7e-46  Score=298.27  Aligned_cols=216  Identities=19%  Similarity=0.311  Sum_probs=171.9

Q ss_pred             CcccccccccccHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC---------------
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP---------------   64 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~---------------   64 (241)
                      ||.+..+........|.+|+.+++++ +|||||+++++|...+..++|||||++|+|.+++....               
T Consensus        58 vK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~~~~~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~  137 (311)
T d1t46a_          58 VKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMED  137 (311)
T ss_dssp             EEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHTTTTC------------
T ss_pred             EEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEEEEEeeCCEEEEEEEcCCCCCHHHHHHhccccccccccccccccc
Confidence            46665555555677899999999999 69999999999999999999999999999999986431               


Q ss_pred             -------chHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCcc
Q 044022           65 -------LPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYS  137 (241)
Q Consensus        65 -------~~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~  137 (241)
                             ..+..++.||+.|+.|||   +++++||||||+||+++.++.++++|||.++...............||+.|+
T Consensus       138 ~~~~l~~~~~~~~~~qi~~gl~~LH---~~~ivHrDLKp~NIl~~~~~~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~  214 (311)
T d1t46a_         138 DELALDLEDLLSFSYQVAKGMAFLA---SKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWM  214 (311)
T ss_dssp             --CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGC
T ss_pred             cccCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccccccccccccCcccccccchheeccCCCcceEeeecccChHHc
Confidence                   146789999999999999   8999999999999999999999999999998776655555556678899999


Q ss_pred             CcccccccCCCcchhhHHHHHHHHHHHhc-CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHH
Q 044022          138 APEYISICVLNEKSNVFSFGAFLFELLAG-RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQ  216 (241)
Q Consensus       138 aPE~~~~~~~~~~~Di~s~G~~~~~~~~g-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (241)
                      |||++.+..++.++||||||+++|||+++ .+||... .        ..+........+.....+     .        .
T Consensus       215 aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~~~~~-~--------~~~~~~~~i~~~~~~~~~-----~--------~  272 (311)
T d1t46a_         215 APESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGM-P--------VDSKFYKMIKEGFRMLSP-----E--------H  272 (311)
T ss_dssp             CHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTC-C--------SSHHHHHHHHHTCCCCCC-----T--------T
T ss_pred             CHHHhcCCCCCCcccccchHHHHHHHHhCCCCCCCCC-C--------HHHHHHHHHhcCCCCCCc-----c--------c
Confidence            99999999999999999999999999995 4444331 1        112222222222211111     1        1


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          217 QLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       217 ~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      .+..+.+|+..||+.||++|||++|
T Consensus       273 ~~~~l~~Li~~cl~~dP~~RPs~~~  297 (311)
T d1t46a_         273 APAEMYDIMKTCWDADPLKRPTFKQ  297 (311)
T ss_dssp             SCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             ccHHHHHHHHHHcCCChhHCcCHHH
Confidence            2257899999999999999999863

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=3.3e-45  Score=289.56  Aligned_cols=203  Identities=23%  Similarity=0.330  Sum_probs=161.9

Q ss_pred             HHHHHHHHHHHHhcC-CCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCCCC
Q 044022           13 YGSCINNITYAAQMS-HNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~-h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      .+++.+|+.++++++ ||||+++++++.+++..|+||||+++|+|.++++....    ....++.||+.||.|||   ++
T Consensus        53 ~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~~~~ivmE~~~~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~~lH---~~  129 (277)
T d1phka_          53 REATLKEVDILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALH---KL  129 (277)
T ss_dssp             HHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHH---HT
T ss_pred             HHHHHHHHHHHHHhcCCCCeEEEEeecccCcceEEEEEcCCCchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---Hc
Confidence            456889999999996 99999999999999999999999999999999965422    57889999999999999   89


Q ss_pred             CceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc------cCCCcchhhHHHHHHHH
Q 044022           88 PIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI------CVLNEKSNVFSFGAFLF  161 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~------~~~~~~~Di~s~G~~~~  161 (241)
                      +|+||||||+|||++.++.+||+|||++.........   ....||+.|+|||.+.+      ..++.++||||+|+++|
T Consensus       130 ~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~~~---~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvily  206 (277)
T d1phka_         130 NIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKL---REVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMY  206 (277)
T ss_dssp             TEECSCCSGGGEEECTTCCEEECCCTTCEECCTTCCB---CCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHH
T ss_pred             CCcccccccceEEEcCCCCeEEccchheeEccCCCce---eeeeccCCCCCHHHhhccccccCCCCCchheEcccchhhh
Confidence            9999999999999999999999999999876554322   33578999999999864      34678999999999999


Q ss_pred             HHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          162 ELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       162 ~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +|++|+.||....         ..+....... +... .+.+ ...        ..++.+.+|+.+||+.||++|||++|
T Consensus       207 eml~g~~Pf~~~~---------~~~~~~~i~~-~~~~-~~~~-~~~--------~~s~~~~~li~~~L~~~p~~R~s~~e  266 (277)
T d1phka_         207 TLLAGSPPFWHRK---------QMLMLRMIMS-GNYQ-FGSP-EWD--------DYSDTVKDLVSRFLVVQPQKRYTAEE  266 (277)
T ss_dssp             HHHHSSCSSCCSS---------HHHHHHHHHH-TCCC-CCTT-TGG--------GSCHHHHHHHHHHCCSSGGGSCCHHH
T ss_pred             hhccCCCCCCCCC---------HHHHHHHHHh-CCCC-CCCc-ccc--------cCCHHHHHHHHHHccCChhHCcCHHH
Confidence            9999999996521         1222222222 1111 1111 111        23367899999999999999999864

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-45  Score=296.53  Aligned_cols=215  Identities=18%  Similarity=0.269  Sum_probs=171.9

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC--------------ch
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP--------------LP   66 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~--------------~~   66 (241)
                      ||.+...........|.+|++++++++|||||+++++|...+..++||||+++|+|.+++....              ..
T Consensus        55 vK~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~  134 (308)
T d1p4oa_          55 IKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSK  134 (308)
T ss_dssp             EEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHH
T ss_pred             EEEECcccChHHHHHHHHHHHHHHHcCCCCEeeeeeEEecCCceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHH
Confidence            4666655555666789999999999999999999999999999999999999999999875421              14


Q ss_pred             HHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccC
Q 044022           67 RLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICV  146 (241)
Q Consensus        67 ~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~  146 (241)
                      +..++.+++.||.|||   +++|+||||||+|||++.++++||+|||+++...............+++.|+|||.+.+..
T Consensus       135 ~~~i~~~ia~gl~~LH---~~~ivHrDlk~~NiLld~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~t~~y~aPe~l~~~~  211 (308)
T d1p4oa_         135 MIQMAGEIADGMAYLN---ANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGV  211 (308)
T ss_dssp             HHHHHHHHHHHHHHHH---HTTCBCSCCSGGGEEECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHh---hCCeeeceEcCCceeecCCceEEEeecccceeccCCcceeeccceecccccCCHHHHccCC
Confidence            6789999999999999   8999999999999999999999999999998765554444445557899999999999999


Q ss_pred             CCcchhhHHHHHHHHHHHhcC-cccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHH
Q 044022          147 LNEKSNVFSFGAFLFELLAGR-IHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLT  225 (241)
Q Consensus       147 ~~~~~Di~s~G~~~~~~~~g~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  225 (241)
                      ++.++||||||+++|||++|. +||...         ...+..... ..+.....+     .        ..++.+.+++
T Consensus       212 ~~~~~Dv~S~G~il~El~t~~~~p~~~~---------~~~~~~~~i-~~~~~~~~p-----~--------~~~~~l~~li  268 (308)
T d1p4oa_         212 FTTYSDVWSFGVVLWEIATLAEQPYQGL---------SNEQVLRFV-MEGGLLDKP-----D--------NCPDMLFELM  268 (308)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTSCCTTTTS---------CHHHHHHHH-HTTCCCCCC-----T--------TCCHHHHHHH
T ss_pred             CCcccccccHHHHHHHHHhCCCCCCCCC---------CHHHHHHHH-HhCCCCCCc-----c--------cchHHHHHHH
Confidence            999999999999999999985 666431         222222222 222222211     1        1225799999


Q ss_pred             HHhccCCCCCCCCCCC
Q 044022          226 LECVNNSPEDRPTMVD  241 (241)
Q Consensus       226 ~~cl~~~p~~Rpt~~e  241 (241)
                      .+||+.||++|||++|
T Consensus       269 ~~cl~~~P~~RPs~~~  284 (308)
T d1p4oa_         269 RMCWQYNPKMRPSFLE  284 (308)
T ss_dssp             HHHTCSSGGGSCCHHH
T ss_pred             HHHcCCChhHCcCHHH
Confidence            9999999999999753

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-44  Score=292.18  Aligned_cols=211  Identities=20%  Similarity=0.229  Sum_probs=166.2

Q ss_pred             Cccccccc--ccccHHHHHHHHHHHH-hcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHH
Q 044022            1 MKFYGHEY--HRHTYGSCINNITYAA-QMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASD   73 (241)
Q Consensus         1 iK~~~~~~--~~~~~~~~~~e~~~l~-~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~   73 (241)
                      ||++.+..  .....+.+.+|+.++. .++|||||++++++..++..|+||||+++|+|.+++.....    ....++.|
T Consensus        32 vK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yivmEy~~~g~L~~~i~~~~~~~e~~~~~~~~q  111 (320)
T d1xjda_          32 IKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAE  111 (320)
T ss_dssp             EEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHH
T ss_pred             EEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCceeEEEeecCCCcHHHHhhccCCCCHHHHHHHHHH
Confidence            35554332  2345567778887765 68999999999999999999999999999999999865432    46789999


Q ss_pred             HHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhh
Q 044022           74 IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNV  153 (241)
Q Consensus        74 i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di  153 (241)
                      |+.||.|||   +++++||||||+|||++.++.+||+|||.+........  ......||+.|+|||++.+..++.++||
T Consensus       112 i~~al~ylH---~~~iiHrDikp~NiL~~~~~~~kl~DFG~a~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Di  186 (320)
T d1xjda_         112 IILGLQFLH---SKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDA--KTNTFCGTPDYIAPEILLGQKYNHSVDW  186 (320)
T ss_dssp             HHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTC--CBCCCCSCGGGCCHHHHTTCCBCTHHHH
T ss_pred             HHHHHHHHH---hCCeeeccCcccceeecCCCceeccccchhhhcccccc--cccccCCCCCcCCHHHHcCCCCCchhhh
Confidence            999999999   89999999999999999999999999999986544322  2234579999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCC
Q 044022          154 FSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSP  233 (241)
Q Consensus       154 ~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p  233 (241)
                      |||||++|+|++|+.||...         ...+....... ...      .....        .++.+.+|+.+||+.||
T Consensus       187 wSlGvilyemltG~~PF~~~---------~~~~~~~~i~~-~~~------~~p~~--------~s~~~~dli~~~L~~dP  242 (320)
T d1xjda_         187 WSFGVLLYEMLIGQSPFHGQ---------DEEELFHSIRM-DNP------FYPRW--------LEKEAKDLLVKLFVREP  242 (320)
T ss_dssp             HHHHHHHHHHHHSSCSSCCS---------SHHHHHHHHHH-CCC------CCCTT--------SCHHHHHHHHHHSCSSG
T ss_pred             hhhhHHHHHHHhCCCCCCCC---------CHHHHHHHHHc-CCC------CCCcc--------CCHHHHHHHHHhcccCC
Confidence            99999999999999999641         12222222211 111      11111        12568899999999999


Q ss_pred             CCCCCCC
Q 044022          234 EDRPTMV  240 (241)
Q Consensus       234 ~~Rpt~~  240 (241)
                      ++|||+.
T Consensus       243 ~~R~s~~  249 (320)
T d1xjda_         243 EKRLGVR  249 (320)
T ss_dssp             GGSBTTB
T ss_pred             CCCcCHH
Confidence            9999984

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-45  Score=296.78  Aligned_cols=211  Identities=19%  Similarity=0.250  Sum_probs=161.2

Q ss_pred             cccccccccccHHHHHHHHHHHHhc-CCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----------------
Q 044022            2 KFYGHEYHRHTYGSCINNITYAAQM-SHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----------------   64 (241)
Q Consensus         2 K~~~~~~~~~~~~~~~~e~~~l~~l-~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----------------   64 (241)
                      |.+.........++|.+|+++|.++ +|||||+++++|..++..++||||+++|+|.++++...                
T Consensus        43 K~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~iV~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~  122 (309)
T d1fvra_          43 KRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTAS  122 (309)
T ss_dssp             EEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSC
T ss_pred             EEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecCCeeEEEEEecCCCcHHHHHhhccccccchhhhccccccC
Confidence            4444444445677899999999999 79999999999999999999999999999999986541                


Q ss_pred             ----chHHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcc
Q 044022           65 ----LPRLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPE  140 (241)
Q Consensus        65 ----~~~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE  140 (241)
                          ..++.++.||+.|+.|||   +.+++||||||+|||++.++.+||+|||+++.......   .....||..|+|||
T Consensus       123 ~l~~~~~~~~~~qia~gl~~lH---~~~iiHrDlkp~NIL~~~~~~~kl~DfG~a~~~~~~~~---~~~~~gt~~y~aPE  196 (309)
T d1fvra_         123 TLSSQQLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVK---KTMGRLPVRWMAIE  196 (309)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECGGGCEEECCTTCEESSCEECC---C----CCTTTCCHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhh---cCCccccccccceEEEcCCCceEEcccccccccccccc---ccceecCCcccchH
Confidence                146789999999999999   89999999999999999999999999999875443222   12345889999999


Q ss_pred             cccccCCCcchhhHHHHHHHHHHHhcC-cccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHH
Q 044022          141 YISICVLNEKSNVFSFGAFLFELLAGR-IHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLH  219 (241)
Q Consensus       141 ~~~~~~~~~~~Di~s~G~~~~~~~~g~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (241)
                      .+....++.++||||||+++|||++|. +||...         ...+...... .+....     ....        .++
T Consensus       197 ~l~~~~~~~~sDvwSfGvil~ell~~~~~p~~~~---------~~~~~~~~i~-~~~~~~-----~~~~--------~~~  253 (309)
T d1fvra_         197 SLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGM---------TCAELYEKLP-QGYRLE-----KPLN--------CDD  253 (309)
T ss_dssp             HHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTC---------CHHHHHHHGG-GTCCCC-----CCTT--------BCH
T ss_pred             HhccCCCCccceeehhHHHHHHHHhcCCCCCCCC---------CHHHHHHHHH-hcCCCC-----CCcc--------CCH
Confidence            999999999999999999999999976 456431         2222222222 221111     1111        225


Q ss_pred             HHHHHHHHhccCCCCCCCCCCC
Q 044022          220 ASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       220 ~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      .+.+|+.+||+.||++|||++|
T Consensus       254 ~~~~li~~cl~~dP~~RPs~~e  275 (309)
T d1fvra_         254 EVYDLMRQCWREKPYERPSFAQ  275 (309)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHH
T ss_pred             HHHHHHHHHcCCChhHCcCHHH
Confidence            7899999999999999999864

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.1e-45  Score=295.86  Aligned_cols=195  Identities=15%  Similarity=0.155  Sum_probs=160.8

Q ss_pred             ccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCC
Q 044022           11 HTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      ...+.+.+|+++|++++|||||++++++......++|+||+.+|+|.+++....    .....++.||+.||.|||   +
T Consensus        83 ~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~v~e~~~~g~l~~~l~~~~~l~e~~~~~i~~qi~~aL~yLH---~  159 (350)
T d1rdqe_          83 KQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLH---S  159 (350)
T ss_dssp             TCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH---H
T ss_pred             HHHHHHHHHHHHHHHcCCCcEeecccccccccccccccccccccchhhhHhhcCCCCHHHHHHHHHHHHHHHHHHH---h
Confidence            456789999999999999999999999999999999999999999999886532    256789999999999999   8


Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHHHHHHHHhc
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGAFLFELLAG  166 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~~~~~~~~g  166 (241)
                      ++|+||||||+|||++.++.+||+|||+++......     ....||+.|+|||++.+..++.++|||||||++|+|++|
T Consensus       160 ~~iiHRDIKP~NILl~~~g~ikL~DFG~a~~~~~~~-----~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyemltG  234 (350)
T d1rdqe_         160 LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRT-----WTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAG  234 (350)
T ss_dssp             TTEECCCCSGGGEEECTTSCEEECCCTTCEECSSCB-----CCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHS
T ss_pred             CCEecCcCCHHHcccCCCCCEEeeeceeeeeccccc-----ccccCccccCCHHHHcCCCCCccccccchhHHHHHHHhC
Confidence            999999999999999999999999999998765432     345789999999999999999999999999999999999


Q ss_pred             CcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCC
Q 044022          167 RIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRP  237 (241)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rp  237 (241)
                      +.||...         ........... +.. .     ....        .++.+.+++.+||..||++|+
T Consensus       235 ~~Pf~~~---------~~~~~~~~i~~-~~~-~-----~p~~--------~s~~~~~li~~~L~~dP~kR~  281 (350)
T d1rdqe_         235 YPPFFAD---------QPIQIYEKIVS-GKV-R-----FPSH--------FSSDLKDLLRNLLQVDLTKRF  281 (350)
T ss_dssp             SCSSCCS---------SHHHHHHHHHH-CCC-C-----CCTT--------CCHHHHHHHHHHSCSCTTTCT
T ss_pred             CCCCCCc---------CHHHHHHHHhc-CCC-C-----CCcc--------CCHHHHHHHHHHhhhCHHhcc
Confidence            9999541         11222222211 111 0     1111        225788999999999999995

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.7e-45  Score=291.83  Aligned_cols=217  Identities=22%  Similarity=0.312  Sum_probs=159.4

Q ss_pred             Ccccccccc--cccHHHHHHHHHHHHhcCCCcccceeeeeeeCC----cceEEEEecCCCCHHHhhcCCCc----hHHHH
Q 044022            1 MKFYGHEYH--RHTYGSCINNITYAAQMSHNHILKRIGCCLQTP----IPILVFQSVEYGTLRDCIFGAPL----PRLKI   70 (241)
Q Consensus         1 iK~~~~~~~--~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~----~~~lv~e~~~~~sL~~~l~~~~~----~~~~~   70 (241)
                      ||++..+..  .....+|.+|++++++++|||||++++++...+    .+|+||||++|++|.+++.....    ....+
T Consensus        37 iK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~~~lvmE~~~g~~L~~~~~~~~~l~~~~~~~i  116 (277)
T d1o6ya_          37 VKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEV  116 (277)
T ss_dssp             EEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEEEEEEEECCCEEEHHHHHHHHCSCCHHHHHHH
T ss_pred             EEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCceEEEEEECCCCCEehhhhcccCCCCHHHHHHH
Confidence            466654332  234667999999999999999999999998654    37899999999999988765422    46789


Q ss_pred             HHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCC-cceeecccccCCCccCcccccccCCCc
Q 044022           71 ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGE-THITTDRVIGTRGYSAPEYISICVLNE  149 (241)
Q Consensus        71 ~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~-~~~~~~~~~~~~~~~aPE~~~~~~~~~  149 (241)
                      +.||+.||.|||   +++++||||||+|||++.++..+++|||.+....... .........||+.|+|||++.+..+++
T Consensus       117 ~~qi~~al~~lH---~~~iiHrDiKP~NIll~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~  193 (277)
T d1o6ya_         117 IADACQALNFSH---QNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDA  193 (277)
T ss_dssp             HHHHHHHHHHHH---HTTEECCCCSGGGEEEETTSCEEECCCTTCEECC----------------TTCCHHHHTTCCCCH
T ss_pred             HHHHHHHHHHHH---hCCccCccccCcccccCccccceeehhhhhhhhccccccccccccccCcccccCHHHHcCCCCCc
Confidence            999999999999   8999999999999999999999999999987654332 222334567999999999999889999


Q ss_pred             chhhHHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhc
Q 044022          150 KSNVFSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECV  229 (241)
Q Consensus       150 ~~Di~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl  229 (241)
                      ++||||||+++|+|++|+.||...         ...+...........   .........        ++.+.+++.+||
T Consensus       194 ~~DiwSlGvilyelltG~~Pf~~~---------~~~~~~~~~~~~~~~---~~~~~~~~~--------s~~l~~li~~~L  253 (277)
T d1o6ya_         194 RSDVYSLGCVLYEVLTGEPPFTGD---------SPVSVAYQHVREDPI---PPSARHEGL--------SADLDAVVLKAL  253 (277)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSCCCS---------SHHHHHHHHHHCCCC---CGGGTSSSC--------CHHHHHHHHHHT
T ss_pred             ceecccchHHHHHHHhCCCCCCCc---------CHHHHHHHHHhcCCC---CCchhccCC--------CHHHHHHHHHHc
Confidence            999999999999999999999541         112222222222111   111111222        267889999999


Q ss_pred             cCCCCCCC-CCC
Q 044022          230 NNSPEDRP-TMV  240 (241)
Q Consensus       230 ~~~p~~Rp-t~~  240 (241)
                      +.||++|| |++
T Consensus       254 ~~dp~~R~~sa~  265 (277)
T d1o6ya_         254 AKNPENRYQTAA  265 (277)
T ss_dssp             CSSGGGSCSSHH
T ss_pred             cCCHhHCHhHHH
Confidence            99999999 543

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.1e-45  Score=290.65  Aligned_cols=215  Identities=20%  Similarity=0.168  Sum_probs=159.9

Q ss_pred             HHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC----chHHHHHHHHHHHhchhhcCCCCC
Q 044022           13 YGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGFPRP   88 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~~~~   88 (241)
                      .+.+.+|++++++++|||||++++++..++..++||||+.++++........    ..+..++.||+.||.|||   +++
T Consensus        44 ~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~ivmE~~~~~~~~~~~~~~~~l~~~~~~~~~~qil~aL~~lH---~~~  120 (299)
T d1ua2a_          44 NRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLH---QHW  120 (299)
T ss_dssp             CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEECCSEEHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHH---HTT
T ss_pred             HHHHHHHHHHHHhCCCCCEeEEEeeeccCCceeehhhhhcchHHhhhhhcccCCCHHHHHHHHHHHHHHHHHhh---ccc
Confidence            4578999999999999999999999999999999999999887777665432    257789999999999999   999


Q ss_pred             ceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc-CCCcchhhHHHHHHHHHHHhcC
Q 044022           89 IVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-VLNEKSNVFSFGAFLFELLAGR  167 (241)
Q Consensus        89 ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~~~~~~~g~  167 (241)
                      ++||||||+|||++.++.+||+|||.+........  ......||+.|+|||++... .++.++|||||||++|+|++|.
T Consensus       121 iiHrDiKp~NIli~~~~~~KL~DFG~a~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~  198 (299)
T d1ua2a_         121 ILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNR--AYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRV  198 (299)
T ss_dssp             CCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCC--CCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSS
T ss_pred             eecccCCcceEEecCCCccccccCccccccCCCcc--cccceecChhhccHHHHccCCCCChhhhhhhcchHHHHHHhCc
Confidence            99999999999999999999999999976544322  12345789999999998755 5789999999999999999999


Q ss_pred             cccccccccCCCcccchHHHHHHHhh---hcccCCCCC------CccccCCCch--h--HHHHHHHHHHHHHHhccCCCC
Q 044022          168 IHIWDLLKDTHDHGCFFNEYLKNYLE---DKRFTGIPA------PIIVQDIPCI--E--KEQQLHASAQLTLECVNNSPE  234 (241)
Q Consensus       168 ~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~------~~~~~~~~~~--~--~~~~~~~~~~l~~~cl~~~p~  234 (241)
                      +||....         ..+.+.....   ........+      .......+..  .  ....++.+.+|+.+||+.||+
T Consensus       199 ~pf~~~~---------~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~dP~  269 (299)
T d1ua2a_         199 PFLPGDS---------DLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPC  269 (299)
T ss_dssp             CSSCCSS---------HHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTT
T ss_pred             CCCCCCC---------HHHHHHHHHHhcCCCChhhccchhccchhhhhccCCCCChHHhcccCCHHHHHHHHHHccCChh
Confidence            9995421         1111111111   000000000      0000000000  0  012236789999999999999


Q ss_pred             CCCCCCC
Q 044022          235 DRPTMVD  241 (241)
Q Consensus       235 ~Rpt~~e  241 (241)
                      +||||+|
T Consensus       270 ~R~sa~e  276 (299)
T d1ua2a_         270 ARITATQ  276 (299)
T ss_dssp             TSCCHHH
T ss_pred             hCcCHHH
Confidence            9999864

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-44  Score=291.43  Aligned_cols=213  Identities=15%  Similarity=0.202  Sum_probs=165.8

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC--c---hHHHHHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP--L---PRLKIASDIV   75 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~--~---~~~~~~~~i~   75 (241)
                      ||++..+.  .....+.+|+++|++++|||||++++++..++.+|+|||||+||+|.+++....  .   ....++.||+
T Consensus        35 iK~i~~~~--~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~lvmE~~~gg~L~~~i~~~~~~l~e~~~~~i~~qi~  112 (321)
T d1tkia_          35 AKFVKVKG--TDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVC  112 (321)
T ss_dssp             EEEECCCT--HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECCCCCCBHHHHHTSSSCCCCHHHHHHHHHHHH
T ss_pred             EEEEcCCc--ccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence            35554332  234568899999999999999999999999999999999999999999997643  2   4678999999


Q ss_pred             HHhchhhcCCCCCceeccCCCCCeeecCC--CCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhh
Q 044022           76 NSLAYLHFGFPRPIVLRNFKTQNILFNEE--NVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNV  153 (241)
Q Consensus        76 ~~l~~lh~~~~~~ivh~dl~~~nil~~~~--~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di  153 (241)
                      .||.|||   +++|+||||||+|||++.+  ..++|+|||.+.........   ....+++.|+|||...+..++.++||
T Consensus       113 ~al~yLH---~~~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~~~~~~---~~~~~t~~y~ape~~~~~~~~~~~Di  186 (321)
T d1tkia_         113 EALQFLH---SHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNF---RLLFTAPEYYAPEVHQHDVVSTATDM  186 (321)
T ss_dssp             HHHHHHH---HTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCEE---EEEESCGGGSCHHHHTTCEECHHHHH
T ss_pred             HHHHHHH---HcCCCcccccccceeecCCCceEEEEcccchhhccccCCcc---cccccccccccchhccCCCCCchhhc
Confidence            9999999   8999999999999999854  58999999999876544322   33468999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCC
Q 044022          154 FSFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSP  233 (241)
Q Consensus       154 ~s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p  233 (241)
                      ||+||++|+|++|..||....         ..+......... .  ..+.....        ..++.+.+|+.+||..||
T Consensus       187 WSlGvily~ll~G~~Pf~~~~---------~~~~~~~i~~~~-~--~~~~~~~~--------~~s~~~~~li~~~L~~dp  246 (321)
T d1tkia_         187 WSLGTLVYVLLSGINPFLAET---------NQQIIENIMNAE-Y--TFDEEAFK--------EISIEAMDFVDRLLVKER  246 (321)
T ss_dssp             HHHHHHHHHHHHSSCTTCCSS---------HHHHHHHHHHTC-C--CCCHHHHT--------TSCHHHHHHHHTTSCSSG
T ss_pred             ccHHHHHHHHHhCCCCCCCCC---------HHHHHHHHHhCC-C--CCChhhcc--------CCCHHHHHHHHHHccCCh
Confidence            999999999999999996521         122222222111 0  01111111        123578899999999999


Q ss_pred             CCCCCCCC
Q 044022          234 EDRPTMVD  241 (241)
Q Consensus       234 ~~Rpt~~e  241 (241)
                      ++|||++|
T Consensus       247 ~~R~s~~e  254 (321)
T d1tkia_         247 KSRMTASE  254 (321)
T ss_dssp             GGSCCHHH
T ss_pred             hHCcCHHH
Confidence            99999853

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-44  Score=293.17  Aligned_cols=207  Identities=17%  Similarity=0.225  Sum_probs=159.2

Q ss_pred             HHHHHHHHHHHHhc-CCCcccceeeeeee----CCcceEEEEecCCCCHHHhhcCCC---c---hHHHHHHHHHHHhchh
Q 044022           13 YGSCINNITYAAQM-SHNHILKRIGCCLQ----TPIPILVFQSVEYGTLRDCIFGAP---L---PRLKIASDIVNSLAYL   81 (241)
Q Consensus        13 ~~~~~~e~~~l~~l-~h~~iv~~~~~~~~----~~~~~lv~e~~~~~sL~~~l~~~~---~---~~~~~~~~i~~~l~~l   81 (241)
                      ...+.+|+.++.++ +|||||+++++|..    ...+|+|||||+||+|.+++....   .   ....++.||+.||.||
T Consensus        48 ~~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~~~~~ivmEy~~gg~L~~~i~~~~~~~l~e~~~~~i~~qi~~al~yl  127 (335)
T d2ozaa1          48 CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYL  127 (335)
T ss_dssp             SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCCSEEHHHHHHSCSCCCEEHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcCCCCCCeEEEEEeecccCCCEEEEEEECCCCCcHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHH
Confidence            45678999987655 89999999999875    457899999999999999997642   2   4678999999999999


Q ss_pred             hcCCCCCceeccCCCCCeeecC---CCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchhhHHHHH
Q 044022           82 HFGFPRPIVLRNFKTQNILFNE---ENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGA  158 (241)
Q Consensus        82 h~~~~~~ivh~dl~~~nil~~~---~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~  158 (241)
                      |   +++|+||||||+|||++.   .+.+||+|||++........   .....||+.|+|||++.+..++.++|||||||
T Consensus       128 H---~~~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~y~~~~DiwSlGv  201 (335)
T d2ozaa1         128 H---SINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNS---LTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGV  201 (335)
T ss_dssp             H---HTTEECCCCSGGGEEESCSSTTCCEEECCCTTCEECCCCCC---CCCCSCCCSSCCCCCCCGGGGSHHHHHHHHHH
T ss_pred             H---HcCCccccccccccccccccccccccccccceeeeccCCCc---cccccCCcccCCcHHHcCCCCCHHHHHHhhch
Confidence            9   999999999999999985   46799999999987655432   23457999999999999999999999999999


Q ss_pred             HHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCC
Q 044022          159 FLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT  238 (241)
Q Consensus       159 ~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt  238 (241)
                      ++|+|++|+.||........         ......     .+..  .....+.......++.+.+|+.+||+.||++|||
T Consensus       202 ily~lltg~~Pf~~~~~~~~---------~~~~~~-----~i~~--~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s  265 (335)
T d2ozaa1         202 IMYILLCGYPPFYSNHGLAI---------SPGMKT-----RIRM--GQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMT  265 (335)
T ss_dssp             HHHHHTTSSCSCEETTCC----------------------CCCS--CSSSCCTTHHHHSCHHHHHHHHHHSCSSTTTSCC
T ss_pred             hHHHHhhCCCCCCCCCHHHH---------HHHHHH-----HHhc--CCCCCCCcccccCCHHHHHHHHHHccCChhHCcC
Confidence            99999999999965211110         000000     0000  0011222223345578999999999999999999


Q ss_pred             CCC
Q 044022          239 MVD  241 (241)
Q Consensus       239 ~~e  241 (241)
                      ++|
T Consensus       266 ~~e  268 (335)
T d2ozaa1         266 ITE  268 (335)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            853

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.6e-44  Score=294.64  Aligned_cols=199  Identities=19%  Similarity=0.205  Sum_probs=155.8

Q ss_pred             HHHHHHH---HHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCC
Q 044022           13 YGSCINN---ITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        13 ~~~~~~e---~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ...+.+|   +++++.++|||||++++++...+..|+||||+++|+|.+++.....    ....++.||+.||.|||   
T Consensus        48 ~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~~~~ivmE~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~aL~ylH---  124 (364)
T d1omwa3          48 ETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMH---  124 (364)
T ss_dssp             HHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECCEEEEEEEecCCCcHHHHHHhcccccHHHHHHHHHHHHHHHHHHH---
Confidence            3444444   6677777899999999999999999999999999999999865422    56789999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccc-cCCCcchhhHHHHHHHHHHH
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI-CVLNEKSNVFSFGAFLFELL  164 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~~~~~~  164 (241)
                      +++++||||||+|||++.++.+||+|||++........    ....||+.|+|||++.. ..++.++|||||||++|+|+
T Consensus       125 ~~~iiHrDlKP~NILl~~~g~iKl~DFGla~~~~~~~~----~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyeml  200 (364)
T d1omwa3         125 NRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKP----HASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLL  200 (364)
T ss_dssp             HTTEECCCCSGGGEEECSSSCEEECCCTTCEECSSSCC----CSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHH
T ss_pred             HCCccceeeccceeEEcCCCcEEEeeeceeeecCCCcc----cccccccccchhHHhhcCCCCCcccchhHHHHHHHHHH
Confidence            99999999999999999999999999999987654432    34579999999999874 56899999999999999999


Q ss_pred             hcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCC
Q 044022          165 AGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM  239 (241)
Q Consensus       165 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~  239 (241)
                      +|+.||.......      ........ ...      .......        .++.+.+|+.+||+.||++|||.
T Consensus       201 tG~~Pf~~~~~~~------~~~~~~~~-~~~------~~~~~~~--------~s~~~~~li~~~L~~dP~~R~t~  254 (364)
T d1omwa3         201 RGHSPFRQHKTKD------KHEIDRMT-LTM------AVELPDS--------FSPELRSLLEGLLQRDVNRRLGC  254 (364)
T ss_dssp             HSSCSSCSSCSSC------HHHHHHHS-SSC------CCCCCSS--------SCHHHHHHHHHHTCSSTTTSTTT
T ss_pred             hCCCCCCCCCHHH------HHHHHHhc-ccC------CCCCCCC--------CCHHHHHHHHHHcccCHHHhCCC
Confidence            9999996522111      11111110 000      1111111        22578999999999999999994

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-44  Score=287.69  Aligned_cols=217  Identities=20%  Similarity=0.212  Sum_probs=154.9

Q ss_pred             HHHHHHHhcCCCcccceeeeeeeCC----cceEEEEecCCCCHHHhhcCCCc---hHHHHHHHHHHHhchhhcC-----C
Q 044022           18 NNITYAAQMSHNHILKRIGCCLQTP----IPILVFQSVEYGTLRDCIFGAPL---PRLKIASDIVNSLAYLHFG-----F   85 (241)
Q Consensus        18 ~e~~~l~~l~h~~iv~~~~~~~~~~----~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~i~~~l~~lh~~-----~   85 (241)
                      .|+..+.+++|||||++++++...+    .+|+||||+++|+|.+++++...   .++.++.+++.|+.|||..     .
T Consensus        46 ~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~  125 (303)
T d1vjya_          46 AEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQG  125 (303)
T ss_dssp             HHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTC
T ss_pred             HHHHHHhhCCCCcCcceEEEEEeCCCcceEEEEEEecccCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            4555556789999999999998654    57999999999999999987654   4678999999999999942     1


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcc--eeecccccCCCccCccccccc------CCCcchhhHHHH
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH--ITTDRVIGTRGYSAPEYISIC------VLNEKSNVFSFG  157 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~--~~~~~~~~~~~~~aPE~~~~~------~~~~~~Di~s~G  157 (241)
                      +++|+||||||+|||++.++.+||+|||++.........  .......||+.|+|||++...      .++.++||||||
T Consensus       126 ~~~IvHrDlKp~NILl~~~~~~Kl~DFGl~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~G  205 (303)
T d1vjya_         126 KPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMG  205 (303)
T ss_dssp             BCEEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEECC----CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHH
T ss_pred             CCCeeccccCccceEEcCCCCeEEEecCccccccCCCcceeccccceecccCcCChhhccccccccCCCcCcchhhhhhH
Confidence            369999999999999999999999999999876543222  223456799999999998754      256789999999


Q ss_pred             HHHHHHHhcCcccccccccCCC-----cccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCC
Q 044022          158 AFLFELLAGRIHIWDLLKDTHD-----HGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNS  232 (241)
Q Consensus       158 ~~~~~~~~g~~p~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~  232 (241)
                      +++|||+||..||.........     ......+...........    .+.+...   .........+.+++.+||+.|
T Consensus       206 vvl~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~p~~~~~---~~~~~~~~~l~~li~~cl~~d  278 (303)
T d1vjya_         206 LVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKL----RPNIPNR---WQSCEALRVMAKIMRECWYAN  278 (303)
T ss_dssp             HHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCC----CCCCCGG---GGGCHHHHHHHHHHHTTCCSS
T ss_pred             HHHHHHhhCCCCCCcccccccchhhcccccchHHHHHHHHhcccc----CCCCCcc---cCChHHHHHHHHHHHHHcccC
Confidence            9999999999887542221110     111111222222211111    1111111   111245567899999999999


Q ss_pred             CCCCCCCCC
Q 044022          233 PEDRPTMVD  241 (241)
Q Consensus       233 p~~Rpt~~e  241 (241)
                      |++|||+.|
T Consensus       279 p~~Rps~~e  287 (303)
T d1vjya_         279 GAARLTALR  287 (303)
T ss_dssp             GGGSCCHHH
T ss_pred             HhHCcCHHH
Confidence            999999753

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-43  Score=283.90  Aligned_cols=166  Identities=22%  Similarity=0.293  Sum_probs=134.7

Q ss_pred             Ccccccccc-cccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhh-cCC--Cc---hHHHHHHH
Q 044022            1 MKFYGHEYH-RHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCI-FGA--PL---PRLKIASD   73 (241)
Q Consensus         1 iK~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l-~~~--~~---~~~~~~~~   73 (241)
                      ||++..+.. +...+++.+|++++++++|||||++++++..++..|+||||+.+ ++.+++ ...  ..   .+..++.|
T Consensus        32 vK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv~e~~~~-~~~~~~~~~~~~~l~e~~~~~~~~q  110 (298)
T d1gz8a_          32 LKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQ-DLKKFMDASALTGIPLPLIKSYLFQ  110 (298)
T ss_dssp             EEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECCSE-EHHHHHHHTTTTCCCHHHHHHHHHH
T ss_pred             EEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEeccccccccceeEEEeecCC-chhhhhhhhcccCCCHHHHHHHHHH
Confidence            466654332 24577899999999999999999999999999999999999975 444443 322  11   46789999


Q ss_pred             HHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccC-CCcchh
Q 044022           74 IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICV-LNEKSN  152 (241)
Q Consensus        74 i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~-~~~~~D  152 (241)
                      ++.||.|||   +++|+||||||+|||++.++.+||+|||.+........  ......||+.|+|||.+.... ++.++|
T Consensus       111 il~~L~yLH---~~~IiHrDiKpeNIl~~~~~~~kl~DFG~a~~~~~~~~--~~~~~~gt~~y~apE~~~~~~~~~~~~D  185 (298)
T d1gz8a_         111 LLQGLAFCH---SHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVR--TYTHEVVTLWYRAPEILLGCKYYSTAVD  185 (298)
T ss_dssp             HHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECSTTHHHHHCCCSB--CTTCCBCCCTTCCHHHHTTCSSCCTHHH
T ss_pred             HHHHHHHhh---cCCEEccccCchheeecccCcceeccCCcceeccCCcc--cceeecccceeeehhhhccccCCCcccc
Confidence            999999999   89999999999999999999999999999976654322  123347899999999887665 578999


Q ss_pred             hHHHHHHHHHHHhcCccccc
Q 044022          153 VFSFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       153 i~s~G~~~~~~~~g~~p~~~  172 (241)
                      |||+|+++|+|++|+.||..
T Consensus       186 iwSlGvily~m~~G~~Pf~~  205 (298)
T d1gz8a_         186 IWSLGCIFAEMVTRRALFPG  205 (298)
T ss_dssp             HHHHHHHHHHHHHSSCSCCC
T ss_pred             ccccchhhhHHhhCCCCCCC
Confidence            99999999999999999954

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-42  Score=277.86  Aligned_cols=166  Identities=19%  Similarity=0.222  Sum_probs=134.0

Q ss_pred             Ccccccccc-cccHHHHHHHHHHHHhc---CCCcccceeeeeee-----CCcceEEEEecCCCCHHHhhcCCC--c---h
Q 044022            1 MKFYGHEYH-RHTYGSCINNITYAAQM---SHNHILKRIGCCLQ-----TPIPILVFQSVEYGTLRDCIFGAP--L---P   66 (241)
Q Consensus         1 iK~~~~~~~-~~~~~~~~~e~~~l~~l---~h~~iv~~~~~~~~-----~~~~~lv~e~~~~~sL~~~l~~~~--~---~   66 (241)
                      ||++..... .....++.+|+.+++.|   +||||++++++|..     ....++++|++.++++........  .   .
T Consensus        38 iK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~  117 (305)
T d1blxa_          38 LKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTET  117 (305)
T ss_dssp             EEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSSEEEEEEEEECCSCBHHHHHHHSCTTCSCHHH
T ss_pred             EEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeecccccccCceEEEEEEeccCCchhhhhhccCCCCCHHH
Confidence            455543332 23455677888888776   79999999999863     246899999998877655443321  1   3


Q ss_pred             HHHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccC
Q 044022           67 RLKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICV  146 (241)
Q Consensus        67 ~~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~  146 (241)
                      ...++.|++.||+|||   +++|+||||||+|||++.++.+||+|||.+.......   ......||+.|+|||++.+..
T Consensus       118 ~~~~~~qi~~aL~yLH---~~~ivHrDiKp~NILi~~~~~~kl~dfg~~~~~~~~~---~~~~~~gT~~Y~APE~~~~~~  191 (305)
T d1blxa_         118 IKDMMFQLLRGLDFLH---SHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQM---ALTSVVVTLWYRAPEVLLQSS  191 (305)
T ss_dssp             HHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECSCCSCCCCCGGG---GGCCCCCCCTTCCHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHH---hCCEEecCCCccEEEEcCCCCeeecchhhhhhhcccc---cCCCcccChhhcCcchhcCCC
Confidence            5679999999999999   8999999999999999999999999999987544332   224467999999999999999


Q ss_pred             CCcchhhHHHHHHHHHHHhcCccccc
Q 044022          147 LNEKSNVFSFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       147 ~~~~~Di~s~G~~~~~~~~g~~p~~~  172 (241)
                      ++.++||||+||++|+|++|+.||..
T Consensus       192 y~~~~DiwSlG~il~ell~g~~pf~~  217 (305)
T d1blxa_         192 YATPVDLWSVGCIFAEMFRRKPLFRG  217 (305)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred             CChhehhhchHHHHHHHHHCCCCCCC
Confidence            99999999999999999999999964

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=2.7e-42  Score=274.56  Aligned_cols=167  Identities=21%  Similarity=0.235  Sum_probs=137.6

Q ss_pred             Cccccccc-ccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHH
Q 044022            1 MKFYGHEY-HRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIV   75 (241)
Q Consensus         1 iK~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~   75 (241)
                      ||++..+. ......++.+|+.+|++++|||||++++++...+..++++|++.++.+..+......    ....++.||+
T Consensus        31 vK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~~e~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~  110 (286)
T d1ob3a_          31 LKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLL  110 (286)
T ss_dssp             EEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEECCSEEHHHHHHTSTTCCCHHHHHHHHHHHH
T ss_pred             EEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCCceeEEEEeehhhhHHHHHhhcCCcchhhhHHHHHHHH
Confidence            46665443 334578899999999999999999999999999999999999987777766654422    5678999999


Q ss_pred             HHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc-CCCcchhhH
Q 044022           76 NSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-VLNEKSNVF  154 (241)
Q Consensus        76 ~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~  154 (241)
                      .||.|||   +.+|+||||||+|||++.++.+|++|||.+.........  .....+++.|+|||.+.+. .++.++|||
T Consensus       111 ~~L~~LH---~~~IvHrDiKp~NIll~~~~~~kl~DfG~a~~~~~~~~~--~~~~~~~~~y~~pE~~~~~~~~~~~~Diw  185 (286)
T d1ob3a_         111 NGIAYCH---DRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRK--YTHEIVTLWYRAPDVLMGSKKYSTTIDIW  185 (286)
T ss_dssp             HHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC-----------CCCTTCCHHHHTTCCSCCTHHHHH
T ss_pred             HHHHHhc---cCcEEecCCCCceeeEcCCCCEEecccccceecccCccc--cceecccchhhhHHHHhCCCCCCcceeeh
Confidence            9999999   899999999999999999999999999999776543221  2334688999999998754 568999999


Q ss_pred             HHHHHHHHHHhcCccccc
Q 044022          155 SFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       155 s~G~~~~~~~~g~~p~~~  172 (241)
                      |+|+++|+|++|+.||..
T Consensus       186 slGv~l~el~~G~~pf~~  203 (286)
T d1ob3a_         186 SVGCIFAEMVNGTPLFPG  203 (286)
T ss_dssp             HHHHHHHHHHHSSCSCCC
T ss_pred             hcCcHHHHHHHCCCCCCC
Confidence            999999999999999965

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-43  Score=277.62  Aligned_cols=192  Identities=19%  Similarity=0.266  Sum_probs=153.2

Q ss_pred             HHHHHHHHHHHHhcC--CCcccceeeeeeeCCcceEEEEecCC-CCHHHhhcCCC----chHHHHHHHHHHHhchhhcCC
Q 044022           13 YGSCINNITYAAQMS--HNHILKRIGCCLQTPIPILVFQSVEY-GTLRDCIFGAP----LPRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~--h~~iv~~~~~~~~~~~~~lv~e~~~~-~sL~~~l~~~~----~~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ..++.+|+.++++++  |||||++++++...+..++||||+.+ +++.+++....    .....++.|++.||.|||   
T Consensus        51 ~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~~~~lv~e~~~~~~~l~~~~~~~~~l~e~~~~~~~~qi~~al~~lH---  127 (273)
T d1xwsa_          51 GTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCH---  127 (273)
T ss_dssp             CCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSEEEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHhccCCCCccEEEEEEeeCCeEEEEEEeccCcchHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---
Confidence            345779999999996  89999999999999999999999975 57777765432    246789999999999999   


Q ss_pred             CCCceeccCCCCCeeecCC-CCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCC-CcchhhHHHHHHHHHH
Q 044022           86 PRPIVLRNFKTQNILFNEE-NVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVL-NEKSNVFSFGAFLFEL  163 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~-~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~-~~~~Di~s~G~~~~~~  163 (241)
                      +++|+||||||+|||++.+ +.+||+|||++.......    .+...||+.|+|||++.+..+ +.++||||+||++|+|
T Consensus       128 ~~~iiHrDiKp~NIll~~~~~~vkl~DFG~a~~~~~~~----~~~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvilyel  203 (273)
T d1xwsa_         128 NCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTV----YTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDM  203 (273)
T ss_dssp             HTTEECSCCSGGGEEEETTTTEEEECCCTTCEECCSSC----BCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHH
T ss_pred             HCCCccccCcccceEEecCCCeEEECccccceeccccc----ccccccCCCcCCHHHHcCCCCCCcccccccceeeehhH
Confidence            9999999999999999854 799999999998654432    234579999999999987665 5678999999999999


Q ss_pred             HhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          164 LAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       164 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ++|+.||....               .... ...      .+....        ++++.+|+.+||+.||++|||++|
T Consensus       204 l~g~~Pf~~~~---------------~i~~-~~~------~~~~~~--------s~~~~~li~~~L~~dp~~R~s~~e  251 (273)
T d1xwsa_         204 VCGDIPFEHDE---------------EIIR-GQV------FFRQRV--------SSECQHLIRWCLALRPSDRPTFEE  251 (273)
T ss_dssp             HHSSCSCCSHH---------------HHHH-CCC------CCSSCC--------CHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             hhCCCCCCCch---------------HHhh-ccc------CCCCCC--------CHHHHHHHHHHccCCHhHCcCHHH
Confidence            99999995411               0111 100      111122        257889999999999999999864

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-41  Score=277.86  Aligned_cols=169  Identities=20%  Similarity=0.212  Sum_probs=137.6

Q ss_pred             CcccccccccccHHHHHHHHHHHHhcCCCcccceeeeeeeCC----cceEEEEecCCCCHHHhhcCCCc---hHHHHHHH
Q 044022            1 MKFYGHEYHRHTYGSCINNITYAAQMSHNHILKRIGCCLQTP----IPILVFQSVEYGTLRDCIFGAPL---PRLKIASD   73 (241)
Q Consensus         1 iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~----~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~~~   73 (241)
                      ||++.........+++++|+++|++++||||+++++++....    ..+++++++.+|+|.+++.....   ....++.|
T Consensus        38 vK~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~~~l~~~~~~g~L~~~l~~~~l~~~~i~~i~~q  117 (345)
T d1pmea_          38 IKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVYLVTHLMGADLYKLLKTQHLSNDHICYFLYQ  117 (345)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCEEEEEECCCEEHHHHHHHCCCCHHHHHHHHHH
T ss_pred             EEEEehhcChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccceEEEEEeecCCchhhhhhcCCCCHHHHHHHHHH
Confidence            466655444455678999999999999999999999997643    23445566668999999876544   46789999


Q ss_pred             HHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcc-eeecccccCCCccCcccccc-cCCCcch
Q 044022           74 IVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETH-ITTDRVIGTRGYSAPEYISI-CVLNEKS  151 (241)
Q Consensus        74 i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~-~~~~~~~~~~~~~aPE~~~~-~~~~~~~  151 (241)
                      ++.||.|||   +++|+||||||+|||++.++.+||+|||++......... .......||+.|+|||++.. ..++.++
T Consensus       118 il~al~yLH---~~~iiHRDIKp~NILl~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~  194 (345)
T d1pmea_         118 ILRGLKYIH---SANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSI  194 (345)
T ss_dssp             HHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCGGGTTTBCSCSTHH
T ss_pred             HHHHHHHHH---HCCCcCCCCCcceEEECCCCCEEEcccCceeeccCCCccceeeccccccceechHHHhhcCCCCCchh
Confidence            999999999   899999999999999999999999999999765443221 12234578999999999854 4678899


Q ss_pred             hhHHHHHHHHHHHhcCccccc
Q 044022          152 NVFSFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       152 Di~s~G~~~~~~~~g~~p~~~  172 (241)
                      ||||+|+++|+|++|+.||..
T Consensus       195 DiwSlG~il~eml~g~~pf~~  215 (345)
T d1pmea_         195 DIWSVGCILAEMLSNRPIFPG  215 (345)
T ss_dssp             HHHHHHHHHHHHHHSSCSCCC
T ss_pred             hhhccCceehHHhhCCCCCCC
Confidence            999999999999999999954

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-41  Score=274.38  Aligned_cols=163  Identities=19%  Similarity=0.243  Sum_probs=138.1

Q ss_pred             Cccccccc-ccccHHHHHHHHHHHHhcCCCcccceeeeeeeCC------cceEEEEecCCCCHHHhhcCCCc---hHHHH
Q 044022            1 MKFYGHEY-HRHTYGSCINNITYAAQMSHNHILKRIGCCLQTP------IPILVFQSVEYGTLRDCIFGAPL---PRLKI   70 (241)
Q Consensus         1 iK~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~------~~~lv~e~~~~~sL~~~l~~~~~---~~~~~   70 (241)
                      ||++.... .....+++.+|+++|++++|||||+++++|...+      .+|+||||+ +.+|....+....   ....+
T Consensus        48 iK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~~~~~lv~e~~-~~~l~~~~~~~~l~~~~~~~~  126 (346)
T d1cm8a_          48 IKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFM-GTDLGKLMKHEKLGEDRIQFL  126 (346)
T ss_dssp             EEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCCCCEEEEECC-SEEHHHHHHHCCCCHHHHHHH
T ss_pred             EEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCccccccceEEEEEecc-cccHHHHHHhccccHHHHHHH
Confidence            46665433 3345678999999999999999999999998654      569999999 5788887765543   46789


Q ss_pred             HHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc-CCCc
Q 044022           71 ASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-VLNE  149 (241)
Q Consensus        71 ~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-~~~~  149 (241)
                      +.||+.||.|||   +++|+||||||+|||++.++.+|++|||.+.......     ....+|+.|+|||++.+. .++.
T Consensus       127 ~~qi~~aL~~LH---~~~IiHrDiKp~NIL~~~~~~~kl~Dfg~a~~~~~~~-----~~~~~t~~y~aPE~~~~~~~~~~  198 (346)
T d1cm8a_         127 VYQMLKGLRYIH---AAGIIHRDLKPGNLAVNEDCELKILDFGLARQADSEM-----TGYVVTRWYRAPEVILNWMRYTQ  198 (346)
T ss_dssp             HHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECCSSC-----CSSCSCGGGCCTHHHHTTTCCCT
T ss_pred             HHHHHHHHHHHH---hCCCcccccCcchhhcccccccccccccceeccCCcc-----ccccccccccCHHHHcCCCCCCc
Confidence            999999999999   9999999999999999999999999999998765433     345789999999998764 5689


Q ss_pred             chhhHHHHHHHHHHHhcCccccc
Q 044022          150 KSNVFSFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       150 ~~Di~s~G~~~~~~~~g~~p~~~  172 (241)
                      ++||||+||++|+|++|+.||..
T Consensus       199 ~~DiwSlGvil~ell~g~~pf~~  221 (346)
T d1cm8a_         199 TVDIWSVGCIMAEMITGKTLFKG  221 (346)
T ss_dssp             THHHHHHHHHHHHHHHSSCSSCC
T ss_pred             cchhhcchHHHHHHHHCcCCCCC
Confidence            99999999999999999999955

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-40  Score=269.21  Aligned_cols=169  Identities=18%  Similarity=0.169  Sum_probs=133.7

Q ss_pred             Cccccccc-ccccHHHHHHHHHHHHhcCCCcccceeeeeee--------CCcceEEEEecCCCCHHHhhcCCCc----hH
Q 044022            1 MKFYGHEY-HRHTYGSCINNITYAAQMSHNHILKRIGCCLQ--------TPIPILVFQSVEYGTLRDCIFGAPL----PR   67 (241)
Q Consensus         1 iK~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~--------~~~~~lv~e~~~~~sL~~~l~~~~~----~~   67 (241)
                      ||++..+. ......++.+|+++|++++||||+++++++..        .+..|+||||+.++.+.........    ..
T Consensus        40 vK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~~~~~~~iv~e~~~~~~~~~~~~~~~~~~~~~~  119 (318)
T d3blha1          40 LKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEI  119 (318)
T ss_dssp             EEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC----------CEEEEEECCCEEHHHHHTCTTCCCCHHHH
T ss_pred             EEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeecccccccccCceEEEEEeccCCCccchhhhcccccccHHH
Confidence            46554332 33566789999999999999999999999865        3468999999987766655443321    45


Q ss_pred             HHHHHHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCc--ceeecccccCCCccCccccccc
Q 044022           68 LKIASDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGET--HITTDRVIGTRGYSAPEYISIC  145 (241)
Q Consensus        68 ~~~~~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~--~~~~~~~~~~~~~~aPE~~~~~  145 (241)
                      ..++.|++.||.|||   +++|+||||||+|||++.++.+|++|||++........  ........||+.|+|||++.+.
T Consensus       120 ~~i~~qil~~l~~lH---~~~ivHrDlKp~NILl~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~  196 (318)
T d3blha1         120 KRVMQMLLNGLYYIH---RNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGE  196 (318)
T ss_dssp             HHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCTTCEECCC-----CCCCCSCCSCGGGCCHHHHTTC
T ss_pred             HHHHHHHHHHHHHhc---cCCEEecCcCchheeecCCCcEEeeecceeeecccccccccccccceecCHHHhhHHHHcCC
Confidence            678999999999999   99999999999999999999999999999976553221  1222345689999999998765


Q ss_pred             -CCCcchhhHHHHHHHHHHHhcCccccc
Q 044022          146 -VLNEKSNVFSFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       146 -~~~~~~Di~s~G~~~~~~~~g~~p~~~  172 (241)
                       .+++++||||+||++|+|++|+.||..
T Consensus       197 ~~~~~k~DiwSlGvil~el~~g~~pf~~  224 (318)
T d3blha1         197 RDYGPPIDLWGAGCIMAEMWTRSPIMQG  224 (318)
T ss_dssp             SSCCTHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred             CCCCcHHHcccCCceeeeHhhCCCCCCC
Confidence             688999999999999999999999954

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.3e-41  Score=269.65  Aligned_cols=205  Identities=19%  Similarity=0.158  Sum_probs=159.9

Q ss_pred             ccHHHHHHHHHHHHhcCC-CcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHHHHhchhhcCC
Q 044022           11 HTYGSCINNITYAAQMSH-NHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIVNSLAYLHFGF   85 (241)
Q Consensus        11 ~~~~~~~~e~~~l~~l~h-~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~~~l~~lh~~~   85 (241)
                      ...+.+.+|++++++++| |||+++++++......++++||+.+|+|.+++.....    ....++.|++.||.|||   
T Consensus        70 ~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~~~~~~v~e~~~~~~L~~~i~~~~~~~e~~~~~~~~Qi~~al~~lH---  146 (322)
T d1vzoa_          70 KTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLH---  146 (322)
T ss_dssp             SSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHhccCCCeEEEeeeeeccCCceeeeeecccccHHHHHHHhcccccHHHHHHHHHHHHHHHHHhh---
Confidence            456778899999999977 8999999999999999999999999999999865432    46678999999999999   


Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc--CCCcchhhHHHHHHHHHH
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC--VLNEKSNVFSFGAFLFEL  163 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~--~~~~~~Di~s~G~~~~~~  163 (241)
                      +++++||||||+|||++.++.++|+|||.+.......... .....|++.|+|||.+.+.  .++.++|||||||++|+|
T Consensus       147 ~~~ivHrDiKp~Nill~~~~~vkL~DFG~a~~~~~~~~~~-~~~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyel  225 (322)
T d1vzoa_         147 KLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETER-AYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYEL  225 (322)
T ss_dssp             HTTCCCCCCCGGGEEECTTSCEEESCSSEEEECCGGGGGG-GCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHH
T ss_pred             cCCEEeccCCccceeecCCCCEEEeeccchhhhccccccc-ccccccccccchhHHhhcCCcCCCchhhhHHHHHHHHHH
Confidence            8999999999999999999999999999998765433222 2345789999999999754  467899999999999999


Q ss_pred             HhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCCC
Q 044022          164 LAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPTM  239 (241)
Q Consensus       164 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt~  239 (241)
                      ++|+.||......     .............. .      ....        ..++.+.+|+.+||+.||++|||+
T Consensus       226 ltG~~PF~~~~~~-----~~~~~i~~~~~~~~-~------~~~~--------~~s~~~~~li~~~l~~dP~~R~s~  281 (322)
T d1vzoa_         226 LTGASPFTVDGEK-----NSQAEISRRILKSE-P------PYPQ--------EMSALAKDLIQRLLMKDPKKRLGC  281 (322)
T ss_dssp             HHSSCTTSCTTSC-----CCHHHHHHHHHHCC-C------CCCT--------TSCHHHHHHHHHHTCSSGGGSTTS
T ss_pred             HhCCCCCCCCCHH-----HHHHHHHHhcccCC-C------CCcc--------cCCHHHHHHHHHHcccCHHHcCCC
Confidence            9999999653211     11112222111111 0      1111        123678999999999999999974

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=100.00  E-value=2.6e-40  Score=267.95  Aligned_cols=220  Identities=13%  Similarity=0.163  Sum_probs=159.4

Q ss_pred             cHHHHHHHHHHHHhcC-CCcccceeeeeee--CCcceEEEEecCCCCHHHhhcCCCc-hHHHHHHHHHHHhchhhcCCCC
Q 044022           12 TYGSCINNITYAAQMS-HNHILKRIGCCLQ--TPIPILVFQSVEYGTLRDCIFGAPL-PRLKIASDIVNSLAYLHFGFPR   87 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~-h~~iv~~~~~~~~--~~~~~lv~e~~~~~sL~~~l~~~~~-~~~~~~~~i~~~l~~lh~~~~~   87 (241)
                      ..+++.+|+++|++++ ||||++++++|..  ....++||||+.+++|....+.... ....++.||+.||.|||   ++
T Consensus        72 ~~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~l~e~~i~~i~~qil~aL~~LH---~~  148 (328)
T d3bqca1          72 KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCH---SM  148 (328)
T ss_dssp             CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEEEEEECCCSCBGGGTTTSCCHHHHHHHHHHHHHHHHHHH---HT
T ss_pred             HHHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCceeEEEeecCCCcHHHHhcCCCHHHHHHHHHHHHHHHHHHh---hc
Confidence            4678899999999995 9999999999974  3568999999999999887765443 56789999999999999   99


Q ss_pred             CceeccCCCCCeeecCCC-CeEEeeccCceecCCCCcceeecccccCCCccCccccccc-CCCcchhhHHHHHHHHHHHh
Q 044022           88 PIVLRNFKTQNILFNEEN-VAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-VLNEKSNVFSFGAFLFELLA  165 (241)
Q Consensus        88 ~ivh~dl~~~nil~~~~~-~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-~~~~~~Di~s~G~~~~~~~~  165 (241)
                      +|+||||||+|||++.++ .++|+|||.+........   .....+|+.|+|||.+.+. .++.++||||+|+++|++++
T Consensus       149 gIvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~  225 (328)
T d3bqca1         149 GIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQE---YNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIF  225 (328)
T ss_dssp             TEECCCCSGGGEEEETTTTEEEECCGGGCEECCTTCC---CCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccceEEcCCCCeeeecccccceeccCCCc---ccccccCccccCcccccCCCCCCcccchhhhhhhhHHhcc
Confidence            999999999999998765 589999999987654432   2345689999999998765 47899999999999999999


Q ss_pred             cCcccccccccCCCcccchHHHH--------HHHhhhccc------C----CCCCCccccCCCchhHHHHHHHHHHHHHH
Q 044022          166 GRIHIWDLLKDTHDHGCFFNEYL--------KNYLEDKRF------T----GIPAPIIVQDIPCIEKEQQLHASAQLTLE  227 (241)
Q Consensus       166 g~~p~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~------~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  227 (241)
                      |+.||.......    .......        .........      .    ...........+.......++++.+|+.+
T Consensus       226 g~~pf~~~~~~~----~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~  301 (328)
T d3bqca1         226 RKEPFFHGHDNY----DQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDK  301 (328)
T ss_dssp             TCSSSSCCSSHH----HHHHHHHHHHCHHHHHHHHHHTTCCCCGGGGGTCCCCCCCCGGGGCCTTTGGGCCHHHHHHHHH
T ss_pred             CCCCCCCCchhH----HHHHHHHHHHCCchhhhhhhhcccccCcccchhcccccccchhhcccccccccCCHHHHHHHHH
Confidence            999996522110    0000000        000000000      0    00001111111111112334678999999


Q ss_pred             hccCCCCCCCCCCC
Q 044022          228 CVNNSPEDRPTMVD  241 (241)
Q Consensus       228 cl~~~p~~Rpt~~e  241 (241)
                      ||..||++|||++|
T Consensus       302 mL~~dP~~R~ta~e  315 (328)
T d3bqca1         302 LLRYDHQSRLTARE  315 (328)
T ss_dssp             HSCSSGGGSCCHHH
T ss_pred             HccCChhHCcCHHH
Confidence            99999999999864

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-40  Score=262.61  Aligned_cols=228  Identities=14%  Similarity=0.135  Sum_probs=166.3

Q ss_pred             Cccccccc-ccccHHHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCc----hHHHHHHHHH
Q 044022            1 MKFYGHEY-HRHTYGSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPL----PRLKIASDIV   75 (241)
Q Consensus         1 iK~~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~----~~~~~~~~i~   75 (241)
                      ||++..+. ......++.+|+.++++++||||+++++++......+++++++.+++|..++.....    .+..++.|++
T Consensus        32 vK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~iv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~q~~  111 (292)
T d1unla_          32 LKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLL  111 (292)
T ss_dssp             EEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCSEEHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred             EEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeeccccccccceeEEeeeccccccccccccccccchhHHHHHHHHHH
Confidence            46664333 334578899999999999999999999999999999999999999998888765532    4678999999


Q ss_pred             HHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccC-CCcchhhH
Q 044022           76 NSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICV-LNEKSNVF  154 (241)
Q Consensus        76 ~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~-~~~~~Di~  154 (241)
                      .||+|||   +++|+||||||+|||++.++.+||+|||.+..........  ....++..|+|||.+.... ++.++|||
T Consensus       112 ~aL~~lH---~~~IvHrDiKP~NIli~~~~~~kl~DFG~a~~~~~~~~~~--~~~~~~~~~~~pe~~~~~~~~~~~~Diw  186 (292)
T d1unla_         112 KGLGFCH---SRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCY--SAEVVTLWYRPPDVLFGAKLYSTSIDMW  186 (292)
T ss_dssp             HHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSCCSCC--CSCCSCGGGCCHHHHTTCSCCCTHHHHH
T ss_pred             HHHHHhh---cCCEeeecccCcccccccCCceeeeecchhhcccCCCccc--eeeccccchhhhhHhccCCCCCchhhcc
Confidence            9999999   8999999999999999999999999999998765443222  2345678899999887664 68999999


Q ss_pred             HHHHHHHHHHhcCcccccccccCCCcccchHHHHHHHh---hhcc---------cCCCC-CCccc-cCCCchhHHHHHHH
Q 044022          155 SFGAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYL---EDKR---------FTGIP-APIIV-QDIPCIEKEQQLHA  220 (241)
Q Consensus       155 s~G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~---------~~~~~-~~~~~-~~~~~~~~~~~~~~  220 (241)
                      |+||++|+|++|+.||.....        ..+......   ....         ..... .+... ...........++.
T Consensus       187 SlG~il~ell~g~~p~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  258 (292)
T d1unla_         187 SAGCIFAELANAGRPLFPGND--------VDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNAT  258 (292)
T ss_dssp             HHHHHHHHHTTTSCCSCCCSS--------HHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCTTTSTTCCHH
T ss_pred             ccchHHHHHhhCCCCCCCCCC--------HHHHHHHHHhhcCCCChhhhhhhhhcccccccccccccchhhhccccCCHH
Confidence            999999999999999854211        111111111   0000         00000 00000 00000001123357


Q ss_pred             HHHHHHHhccCCCCCCCCCCC
Q 044022          221 SAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       221 ~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      +.+|+.+||+.||++||||+|
T Consensus       259 ~~dll~~mL~~dP~~R~sa~e  279 (292)
T d1unla_         259 GRDLLQNLLKCNPVQRISAEE  279 (292)
T ss_dssp             HHHHHHHHSCSSGGGSCCHHH
T ss_pred             HHHHHHHHccCChhHCcCHHH
Confidence            889999999999999999864

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-40  Score=270.24  Aligned_cols=235  Identities=16%  Similarity=0.200  Sum_probs=158.1

Q ss_pred             Ccccccccc-cccHHHHHHHHHHHHhcCCCcccceeeeeeeC------CcceEEEEecCCCCHHHhhcCCCc-hHHHHHH
Q 044022            1 MKFYGHEYH-RHTYGSCINNITYAAQMSHNHILKRIGCCLQT------PIPILVFQSVEYGTLRDCIFGAPL-PRLKIAS   72 (241)
Q Consensus         1 iK~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~------~~~~lv~e~~~~~sL~~~l~~~~~-~~~~~~~   72 (241)
                      ||++..+.. .....++.+|+.++++++|||||+++++|...      ++.|+||||+.++.+.......+. ....++.
T Consensus        47 vK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~~~~~iv~Ey~~~~l~~~~~~~~~~~~i~~~~~  126 (355)
T d2b1pa1          47 IKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLY  126 (355)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCEEEEEEECCSEEHHHHHTSCCCHHHHHHHHH
T ss_pred             EEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccCceeEEEEeccchHHHHhhhcCCCHHHHHHHHH
Confidence            466654443 34456789999999999999999999999643      578999999976555544433332 5678999


Q ss_pred             HHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCcccccccCCCcchh
Q 044022           73 DIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICVLNEKSN  152 (241)
Q Consensus        73 ~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~D  152 (241)
                      |++.||.|||   +++|+||||||+|||++.++.++++|||.+........   .....+|+.|+|||++.+..+++++|
T Consensus       127 qil~gl~~LH---~~giiHrDlKP~Nil~~~~~~~kl~df~~~~~~~~~~~---~~~~~~t~~y~aPE~l~~~~~~~~~D  200 (355)
T d2b1pa1         127 QMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFM---MTPYVVTRYYRAPEVILGMGYKENVD  200 (355)
T ss_dssp             HHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCCCC------------------CCTTCCHHHHTTCCCCTTHH
T ss_pred             HHHHHHHHhh---hcccccccCCccccccccccceeeechhhhhccccccc---cccccccccccChhhhcCCCCCCCcc
Confidence            9999999999   89999999999999999999999999998876544322   23457899999999999999999999


Q ss_pred             hHHHHHHHHHHHhcCcccccccccCC-------------CcccchHHHHHHHhhh-cccCCCCCCcc----ccCCCchhH
Q 044022          153 VFSFGAFLFELLAGRIHIWDLLKDTH-------------DHGCFFNEYLKNYLED-KRFTGIPAPII----VQDIPCIEK  214 (241)
Q Consensus       153 i~s~G~~~~~~~~g~~p~~~~~~~~~-------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~  214 (241)
                      |||+||++|+|++|+.||........             ................ ........+..    .........
T Consensus       201 iwSlG~~l~ell~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (355)
T d2b1pa1         201 IWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHN  280 (355)
T ss_dssp             HHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHTTSCHHHHHHHHTSCCCCCCCHHHHSCGGGSCCSSHHH
T ss_pred             cccccchHHHHhhCCCCCCCCCHHHHHHHHHHhccCCCHHHHHHhhhhHHHHhhcCcccccccccccccccccccccccc
Confidence            99999999999999999954210000             0000000000111111 11111110000    011112233


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCCCC
Q 044022          215 EQQLHASAQLTLECVNNSPEDRPTMVD  241 (241)
Q Consensus       215 ~~~~~~~~~l~~~cl~~~p~~Rpt~~e  241 (241)
                      ...+..+.+|+++||..||++||||+|
T Consensus       281 ~~~s~~~~dll~~mL~~dP~~R~ta~e  307 (355)
T d2b1pa1         281 KLKASQARDLLSKMLVIDPAKRISVDD  307 (355)
T ss_dssp             HHHHHHHHHHHHHHSCSSTTTSCCHHH
T ss_pred             ccCCHHHHHHHHHHCcCChhHCcCHHH
Confidence            456778999999999999999999864

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-40  Score=269.17  Aligned_cols=210  Identities=22%  Similarity=0.213  Sum_probs=148.4

Q ss_pred             HHHHHHHHhcCCCcccceeeeeeeC------CcceEEEEecCCCCHHHhh---cCC-Cc---hHHHHHHHHHHHhchhhc
Q 044022           17 INNITYAAQMSHNHILKRIGCCLQT------PIPILVFQSVEYGTLRDCI---FGA-PL---PRLKIASDIVNSLAYLHF   83 (241)
Q Consensus        17 ~~e~~~l~~l~h~~iv~~~~~~~~~------~~~~lv~e~~~~~sL~~~l---~~~-~~---~~~~~~~~i~~~l~~lh~   83 (241)
                      .+|+++|++++||||++++++|...      .+.++|||||+++.+....   ... ..   .+..++.||+.||.||| 
T Consensus        61 ~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH-  139 (350)
T d1q5ka_          61 NRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH-  139 (350)
T ss_dssp             CHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEEEEEEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHhcCCCCCCcEEEEEEecCccCCceEEEEEEeccCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHH-
Confidence            4799999999999999999998643      2478999999865433332   222 12   46789999999999999 


Q ss_pred             CCCCCceeccCCCCCeeecCCC-CeEEeeccCceecCCCCcceeecccccCCCccCcccccc-cCCCcchhhHHHHHHHH
Q 044022           84 GFPRPIVLRNFKTQNILFNEEN-VAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISI-CVLNEKSNVFSFGAFLF  161 (241)
Q Consensus        84 ~~~~~ivh~dl~~~nil~~~~~-~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-~~~~~~~Di~s~G~~~~  161 (241)
                        +++|+||||||+|||++.++ .+||+|||++.........   ....|++.|+|||.+.+ ..++.++||||+||++|
T Consensus       140 --~~~IiHrDiKp~NILl~~~~~~~kl~DFG~a~~~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~  214 (350)
T d1q5ka_         140 --SFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPN---VSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLA  214 (350)
T ss_dssp             --TTTEECCCCCGGGEEECTTTCCEEECCCTTCEECCTTSCC---CSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHH
T ss_pred             --hcCCcccCCCcceEEEecCCCceeEecccchhhccCCccc---ccccccccccChHHhhcccCCCcceeecccceEEE
Confidence              99999999999999999875 8999999999876544322   33578999999998865 46899999999999999


Q ss_pred             HHHhcCcccccccccCCCcccchHHHH-----------HHHhhh---cccCCCCCCccccCCCchhHHHHHHHHHHHHHH
Q 044022          162 ELLAGRIHIWDLLKDTHDHGCFFNEYL-----------KNYLED---KRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLE  227 (241)
Q Consensus       162 ~~~~g~~p~~~~~~~~~~~~~~~~~~~-----------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  227 (241)
                      ||++|+.||......     .......           ......   ..+.......+....    ....++++.+|+.+
T Consensus       215 el~~g~~pf~~~~~~-----~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~s~~~~dLl~~  285 (350)
T d1q5ka_         215 ELLLGQPIFPGDSGV-----DQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVF----RPRTPPEAIALCSR  285 (350)
T ss_dssp             HHHHTSCSSCCSSHH-----HHHHHHHHHHCCCCHHHHHHHCC---CCCCCCCCCCCGGGTS----CTTSCHHHHHHHHH
T ss_pred             ehhhCCCCCCCCCHH-----HHHHHHHHHhCCChHHhhhhhccchhhccccccccCchhhhc----ccCCCHHHHHHHHH
Confidence            999999999542111     0111110           110000   000111100000000    01223578899999


Q ss_pred             hccCCCCCCCCCCC
Q 044022          228 CVNNSPEDRPTMVD  241 (241)
Q Consensus       228 cl~~~p~~Rpt~~e  241 (241)
                      ||..||++||||+|
T Consensus       286 mL~~dP~~R~ta~e  299 (350)
T d1q5ka_         286 LLEYTPTARLTPLE  299 (350)
T ss_dssp             HSCSSGGGSCCHHH
T ss_pred             HccCChhHCcCHHH
Confidence            99999999999864

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=4.4e-39  Score=257.44  Aligned_cols=208  Identities=16%  Similarity=0.189  Sum_probs=150.3

Q ss_pred             HHHHHHHHHHHHhcCCCcccc-eeeeeeeCCcceEEEEecCCCCHHHhhcCCC-----chHHHHHHHHHHHhchhhcCCC
Q 044022           13 YGSCINNITYAAQMSHNHILK-RIGCCLQTPIPILVFQSVEYGTLRDCIFGAP-----LPRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h~~iv~-~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~-----~~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      .+++.+|++++++++|+|++. +.+++...+..++||||+. ++|.+.+....     .....++.|++.||.|||   +
T Consensus        46 ~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~ivme~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~  121 (299)
T d1ckia_          46 HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELLG-PSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIH---S  121 (299)
T ss_dssp             SCCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEEEEECCC-CBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---H
T ss_pred             CHHHHHHHHHHHHccCCCcccEEEEEEecCCEEEEEEEEcC-CchhhhhhhccCCCcHHHHHHHHHHHHHHHHHHH---H
Confidence            346889999999998776555 4556667788899999995 67766654321     157789999999999999   8


Q ss_pred             CCceeccCCCCCeeecC---CCCeEEeeccCceecCCCCcc-----eeecccccCCCccCcccccccCCCcchhhHHHHH
Q 044022           87 RPIVLRNFKTQNILFNE---ENVAKWFDFLLSISIPEGETH-----ITTDRVIGTRGYSAPEYISICVLNEKSNVFSFGA  158 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~---~~~~~l~df~~~~~~~~~~~~-----~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~G~  158 (241)
                      ++|+||||||+|||++.   +..++++|||+++........     .......||+.|+|||.+.+..++.++||||||+
T Consensus       122 ~~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~  201 (299)
T d1ckia_         122 KNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGY  201 (299)
T ss_dssp             TTEECSCCCGGGEEECCGGGTTCEEECCCSSCEECBCTTTCCBCCCCBCCSCCCCSSSCCHHHHTTBCCCHHHHHHHHHH
T ss_pred             CCeeeccCCHhhccccccCCCceeeeeccCcceeccccccccceeccccCCcCCCccccCHHHHhCCCCCChhhEEecCH
Confidence            99999999999999753   557999999999876543221     1234557999999999999999999999999999


Q ss_pred             HHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCCCC
Q 044022          159 FLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDRPT  238 (241)
Q Consensus       159 ~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rpt  238 (241)
                      ++|||++|+.||..........  ...........      .+.+....        ..++.+.+++..||+.||++||+
T Consensus       202 ~l~el~tg~~P~~~~~~~~~~~--~~~~~~~~~~~------~~~~~~~~--------~~p~~~~~li~~cl~~~p~~RP~  265 (299)
T d1ckia_         202 VLMYFNLGSLPWQGLKAATKRQ--KYERISEKKMS------TPIEVLCK--------GYPSEFATYLNFCRSLRFDDKPD  265 (299)
T ss_dssp             HHHHHHHSSCTTCCCC---------HHHHHHHHHH------SCHHHHTT--------TSCHHHHHHHHHHHHSCTTCCCC
T ss_pred             HHHHHHhCCCcccccchHHHHH--HHHHhhcccCC------CChhHhcc--------CCCHHHHHHHHHHccCChhHCcC
Confidence            9999999999996532221100  00000000000      00111111        12257899999999999999998


Q ss_pred             CC
Q 044022          239 MV  240 (241)
Q Consensus       239 ~~  240 (241)
                      ++
T Consensus       266 ~~  267 (299)
T d1ckia_         266 YS  267 (299)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-39  Score=264.38  Aligned_cols=164  Identities=20%  Similarity=0.291  Sum_probs=131.7

Q ss_pred             Cccccccccc-ccHHHHHHHHHHHHhcCCCcccceeeeeeeC-----CcceEEEEecCCCCHHHhhcCCCc---hHHHHH
Q 044022            1 MKFYGHEYHR-HTYGSCINNITYAAQMSHNHILKRIGCCLQT-----PIPILVFQSVEYGTLRDCIFGAPL---PRLKIA   71 (241)
Q Consensus         1 iK~~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-----~~~~lv~e~~~~~sL~~~l~~~~~---~~~~~~   71 (241)
                      ||++...... ...+++.+|+++|++++|||+|++++++...     ...+++++++.+|+|.+++.....   ....++
T Consensus        48 iK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~~~~~i~~~~~gg~L~~~~~~~~l~e~~~~~i~  127 (348)
T d2gfsa1          48 VKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLI  127 (348)
T ss_dssp             EEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTCCCCEEEEECCSEEHHHHHTTCCCCHHHHHHHH
T ss_pred             EEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccccCceEEEEEeecCCchhhhcccccccHHHHHHHH
Confidence            4666544322 3456789999999999999999999998643     234666777889999999976544   467889


Q ss_pred             HHHHHHhchhhcCCCCCceeccCCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccCccccccc-CCCcc
Q 044022           72 SDIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISIC-VLNEK  150 (241)
Q Consensus        72 ~~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-~~~~~  150 (241)
                      .||+.||.|||   +++|+||||||+|||++.++.++++|||.+......     .....|++.|+|||...+. .++.+
T Consensus       128 ~qil~aL~~LH---~~giiHrDiKp~NILi~~~~~~kl~dfg~a~~~~~~-----~~~~~g~~~y~apE~~~~~~~~~~~  199 (348)
T d2gfsa1         128 YQILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE-----MTGYVATRWYRAPEIMLNWMHYNQT  199 (348)
T ss_dssp             HHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECCC----CCTGG-----GSSSCHHHHTSCHHHHTTCSCCCTT
T ss_pred             HHHHHHHHHHH---hCCCcccccCCccccccccccccccccchhcccCcc-----cccccccccccCchhhcCCccCCcc
Confidence            99999999999   899999999999999999999999999998654332     1335688899999987765 46889


Q ss_pred             hhhHHHHHHHHHHHhcCccccc
Q 044022          151 SNVFSFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       151 ~Di~s~G~~~~~~~~g~~p~~~  172 (241)
                      +||||+||++|+|++|+.||..
T Consensus       200 ~DiwSlGv~l~~ll~g~~pF~~  221 (348)
T d2gfsa1         200 VDIWSVGCIMAELLTGRTLFPG  221 (348)
T ss_dssp             HHHHHHHHHHHHHHHSSCSCCC
T ss_pred             cchhhhhHHHHHHHhCCCCCCC
Confidence            9999999999999999999954

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=1.9e-38  Score=252.87  Aligned_cols=207  Identities=14%  Similarity=0.095  Sum_probs=156.4

Q ss_pred             HHHHHHHHHHHHhcCC-CcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCC--c---hHHHHHHHHHHHhchhhcCCC
Q 044022           13 YGSCINNITYAAQMSH-NHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAP--L---PRLKIASDIVNSLAYLHFGFP   86 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~h-~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~--~---~~~~~~~~i~~~l~~lh~~~~   86 (241)
                      .+++.+|+++++.|+| +|++.+++++......++||||+ +++|.+++....  .   ....++.|++.||.|||   +
T Consensus        44 ~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~vme~~-~~~l~~~~~~~~~~~~~~~~~~i~~q~~~~l~~lH---~  119 (293)
T d1csna_          44 APQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLL-GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIH---E  119 (293)
T ss_dssp             SCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---T
T ss_pred             cHHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEEEEEec-CCCHHHHHHhhccchhhHHHHHHHHHHHHHHHHHH---H
Confidence            4567889999999966 89999999999999999999999 689999875432  1   46789999999999999   9


Q ss_pred             CCceeccCCCCCeeecC-----CCCeEEeeccCceecCCCCcc-----eeecccccCCCccCcccccccCCCcchhhHHH
Q 044022           87 RPIVLRNFKTQNILFNE-----ENVAKWFDFLLSISIPEGETH-----ITTDRVIGTRGYSAPEYISICVLNEKSNVFSF  156 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~-----~~~~~l~df~~~~~~~~~~~~-----~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~s~  156 (241)
                      ++|+||||||+|||++.     .+.++|+|||+++........     .......||+.|+|||.+.+..++.++|||||
T Consensus       120 ~giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSl  199 (293)
T d1csna_         120 KSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEAL  199 (293)
T ss_dssp             TTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHH
T ss_pred             CCceeccCCccceeecCcccccCCceEEcccceeEEcccCccccceeecccCceEEchhhcCHHHhcCCCCChHHHHHHh
Confidence            99999999999999974     578999999999875432211     12234579999999999999999999999999


Q ss_pred             HHHHHHHHhcCcccccccccCCCcccchHHHHHHHhhhcccCCCCCCccccCCCchhHHHHHHHHHHHHHHhccCCCCCC
Q 044022          157 GAFLFELLAGRIHIWDLLKDTHDHGCFFNEYLKNYLEDKRFTGIPAPIIVQDIPCIEKEQQLHASAQLTLECVNNSPEDR  236 (241)
Q Consensus       157 G~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~R  236 (241)
                      |+++|+|++|+.||.......      ..............  .+.+.+....        ++++.+++..||..+|++|
T Consensus       200 G~~l~elltg~~Pf~~~~~~~------~~~~~~~i~~~~~~--~~~~~l~~~~--------p~~l~~ii~~~~~~~~~~r  263 (293)
T d1csna_         200 GHVFMYFLRGSLPWQGLKAAT------NKQKYERIGEKKQS--TPLRELCAGF--------PEEFYKYMHYARNLAFDAT  263 (293)
T ss_dssp             HHHHHHHHHSSCTTSSCCSCC------HHHHHHHHHHHHHH--SCHHHHTTTS--------CHHHHHHHHHHHHCCTTCC
T ss_pred             hHHHHHHHhCCCcCCCccchh------HHHHHHHHHhccCC--CChHHhcCCC--------CHHHHHHHHHHhcCCcccC
Confidence            999999999999996421111      11111111100000  0011111222        2578899999999999999


Q ss_pred             CCC
Q 044022          237 PTM  239 (241)
Q Consensus       237 pt~  239 (241)
                      |+.
T Consensus       264 P~y  266 (293)
T d1csna_         264 PDY  266 (293)
T ss_dssp             CCH
T ss_pred             cCH
Confidence            974

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=3.2e-33  Score=228.81  Aligned_cols=153  Identities=21%  Similarity=0.223  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHHHhcC-----------CCcccceeeeeeeC--CcceEEEEecCCC-CHHHhhcCC---C---chHHHHHH
Q 044022           13 YGSCINNITYAAQMS-----------HNHILKRIGCCLQT--PIPILVFQSVEYG-TLRDCIFGA---P---LPRLKIAS   72 (241)
Q Consensus        13 ~~~~~~e~~~l~~l~-----------h~~iv~~~~~~~~~--~~~~lv~e~~~~~-sL~~~l~~~---~---~~~~~~~~   72 (241)
                      .+.+.+|+++++.++           |+||+++++++...  ...+++++++..+ .........   .   .....++.
T Consensus        53 ~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  132 (362)
T d1q8ya_          53 TEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISK  132 (362)
T ss_dssp             HHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeeeccccceeeeeeecccccccccccccccccCCcHHHHHHHHH
Confidence            467788999998885           47899999988653  3455666665433 332222211   1   13567899


Q ss_pred             HHHHHhchhhcCCCCCceeccCCCCCeeecCCCC------eEEeeccCceecCCCCcceeecccccCCCccCcccccccC
Q 044022           73 DIVNSLAYLHFGFPRPIVLRNFKTQNILFNEENV------AKWFDFLLSISIPEGETHITTDRVIGTRGYSAPEYISICV  146 (241)
Q Consensus        73 ~i~~~l~~lh~~~~~~ivh~dl~~~nil~~~~~~------~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~  146 (241)
                      |++.|+.|||+  ..+|+||||||+|||++.++.      ++++|||.+.......     ....||+.|+|||++....
T Consensus       133 qil~al~~lh~--~~~IvHrDlKp~NIll~~~~~~~~~~~~kl~dfg~s~~~~~~~-----~~~~gt~~y~aPE~~~~~~  205 (362)
T d1q8ya_         133 QLLLGLDYMHR--RCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHY-----TNSIQTREYRSPEVLLGAP  205 (362)
T ss_dssp             HHHHHHHHHHH--TTCEECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETTBCC-----CSCCSCGGGCCHHHHHTCC
T ss_pred             HHHHHHHHHhh--hcCcccccCChhHeeeeccCcccccceeeEeeccccccccccc-----ccccccccccChhhccccC
Confidence            99999999993  389999999999999987653      8999999987654332     3457899999999999999


Q ss_pred             CCcchhhHHHHHHHHHHHhcCccccc
Q 044022          147 LNEKSNVFSFGAFLFELLAGRIHIWD  172 (241)
Q Consensus       147 ~~~~~Di~s~G~~~~~~~~g~~p~~~  172 (241)
                      ++.++||||+|+++++|++|+.||..
T Consensus       206 ~~~~~DiwSlG~il~el~~g~~pF~~  231 (362)
T d1q8ya_         206 WGCGADIWSTACLIFELITGDFLFEP  231 (362)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCCC--
T ss_pred             CCccccccchHHHHHHHHHCCCCCCC
Confidence            99999999999999999999999964

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.68  E-value=2.6e-17  Score=121.87  Aligned_cols=123  Identities=15%  Similarity=0.070  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHhcCCCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCchHHHHHHHHHHHhchhhcCCCCCceecc
Q 044022           14 GSCINNITYAAQMSHNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDIVNSLAYLHFGFPRPIVLRN   93 (241)
Q Consensus        14 ~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~i~~~l~~lh~~~~~~ivh~d   93 (241)
                      ..+.+|...+.++.|.+++..+++.    ..+++|||++++.+.++.   ......++.+++.++.|||   +++++|||
T Consensus        59 ~~~~~e~~~l~~l~~~~v~~~~~~~----~~~lvme~~~~~~~~~l~---~~~~~~i~~ql~~~l~~lH---~~giiHrD  128 (191)
T d1zara2          59 RSARNEFRALQKLQGLAVPKVYAWE----GNAVLMELIDAKELYRVR---VENPDEVLDMILEEVAKFY---HRGIVHGD  128 (191)
T ss_dssp             HHHHHHHHHHHHTTTSSSCCEEEEE----TTEEEEECCCCEEGGGCC---CSCHHHHHHHHHHHHHHHH---HTTEECSC
T ss_pred             HHHHHHHHHHHHccCCCcceEEEec----CCEEEEEeeccccccchh---hHHHHHHHHHHHHHHHHHh---hCCEEEcc
Confidence            3456789999999999998887653    248999999876654421   2345678999999999999   89999999


Q ss_pred             CCCCCeeecCCCCeEEeeccCceecCCCCcceeecccccCCCccC------cccccccCCCcchhhHHHHH
Q 044022           94 FKTQNILFNEENVAKWFDFLLSISIPEGETHITTDRVIGTRGYSA------PEYISICVLNEKSNVFSFGA  158 (241)
Q Consensus        94 l~~~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~a------PE~~~~~~~~~~~Di~s~G~  158 (241)
                      |||+|||++.+ .++++|||.++........          .|+.      .+. ....++.++|+||..-
T Consensus       129 iKP~NILv~~~-~~~liDFG~a~~~~~~~~~----------~~l~rd~~~~~~~-f~r~y~~~~d~~s~~~  187 (191)
T d1zara2         129 LSQYNVLVSEE-GIWIIDFPQSVEVGEEGWR----------EILERDVRNIITY-FSRTYRTEKDINSAID  187 (191)
T ss_dssp             CSTTSEEEETT-EEEECCCTTCEETTSTTHH----------HHHHHHHHHHHHH-HHHHHCCCCCHHHHHH
T ss_pred             CChhheeeeCC-CEEEEECCCcccCCCCCcH----------HHHHHHHHHHHHH-HcCCCCCcccHHHHHH
Confidence            99999999965 4889999999765433210          0111      011 1246788899999753

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.07  E-value=8.7e-06  Score=61.41  Aligned_cols=104  Identities=11%  Similarity=-0.017  Sum_probs=68.3

Q ss_pred             cHHHHHHHHHHHHhcC-CCcccceeeeeeeCCcceEEEEecCCCCHHHhhcCCCchHHHHHHHHHHHhchhhc-------
Q 044022           12 TYGSCINNITYAAQMS-HNHILKRIGCCLQTPIPILVFQSVEYGTLRDCIFGAPLPRLKIASDIVNSLAYLHF-------   83 (241)
Q Consensus        12 ~~~~~~~e~~~l~~l~-h~~iv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~i~~~l~~lh~-------   83 (241)
                      ....+.+|...+..+. +--+.+++.+...++..++||++++|.++........ ....++.++...++.||.       
T Consensus        52 ~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~~~~~lv~~~l~G~~~~~~~~~~~-~~~~~~~~l~~~l~~lH~~~~~~~~  130 (263)
T d1j7la_          52 TTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEADGVLCSEEYEDEQ-SPEKIIELYAECIRLFHSIDISDCP  130 (263)
T ss_dssp             STTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCSSEEHHHHTTTCS-CHHHHHHHHHHHHHHHHTSCCTTCS
T ss_pred             chhhHHHHHHHHHHHhccCCCCcEEEEEecCCceEEEEEecccccccccccccc-cHHHHHHHHHHHHHHHhccCccccc
Confidence            3445778999988884 3335677888888888999999999888765443221 111222222222333321       


Q ss_pred             -------------------------------------------------CCCCCceeccCCCCCeeecCCCCeEEeeccC
Q 044022           84 -------------------------------------------------GFPRPIVLRNFKTQNILFNEENVAKWFDFLL  114 (241)
Q Consensus        84 -------------------------------------------------~~~~~ivh~dl~~~nil~~~~~~~~l~df~~  114 (241)
                                                                       .....++|+|+.+.||+++.++.+.|+||+.
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDwe~  210 (263)
T d1j7la_         131 YTNSLDSRLAELDYLLNNDLADVDCENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGR  210 (263)
T ss_dssp             CBCCHHHHHHHHHHHHHTTCSCCCGGGGSTTCSCSSHHHHHHHHHHSCCCCCEEEECSCCCTTSEEEETTEEEEECCCTT
T ss_pred             cCcchhhhhhhHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHhcCCcCCcEEEEeeccCcceeecCCceEEEeechh
Confidence                                                             0012378999999999999877777999987


Q ss_pred             ce
Q 044022          115 SI  116 (241)
Q Consensus       115 ~~  116 (241)
                      +.
T Consensus       211 a~  212 (263)
T d1j7la_         211 SG  212 (263)
T ss_dssp             CE
T ss_pred             cc
Confidence            74

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=97.66  E-value=5e-05  Score=56.75  Aligned_cols=44  Identities=7%  Similarity=-0.013  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHhcCCC--cccceeeeeeeCCcceEEEEecCCCCHH
Q 044022           14 GSCINNITYAAQMSHN--HILKRIGCCLQTPIPILVFQSVEYGTLR   57 (241)
Q Consensus        14 ~~~~~e~~~l~~l~h~--~iv~~~~~~~~~~~~~lv~e~~~~~sL~   57 (241)
                      ..+..|+..++.|...  .+.+++.+....+..++||++++|.++.
T Consensus        49 ~~l~~E~~~l~~L~~~gvpvP~v~~~~~~~~~~~~v~~~i~G~~~~   94 (255)
T d1nd4a_          49 NELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLL   94 (255)
T ss_dssp             SCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEETT
T ss_pred             hHHHHHHHHHHHHHhcCCCCCceeeecccccceEEEEEeeeccccc
Confidence            3567888888888432  3456788877778889999999876653

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=96.28  E-value=0.0023  Score=50.80  Aligned_cols=30  Identities=17%  Similarity=0.254  Sum_probs=25.6

Q ss_pred             CCceeccCCCCCeeecCCCCeEEeeccCcee
Q 044022           87 RPIVLRNFKTQNILFNEENVAKWFDFLLSIS  117 (241)
Q Consensus        87 ~~ivh~dl~~~nil~~~~~~~~l~df~~~~~  117 (241)
                      ..++|+|+.+.|||++.+. ++|+||..+..
T Consensus       223 ~~LiHGDl~~gNIlv~~~~-~~vID~E~a~~  252 (392)
T d2pula1         223 ETLIHGDLHTGSIFASEHE-TKVIDPEFAFY  252 (392)
T ss_dssp             CEEECSCCCGGGEEECSSC-EEECCCTTCEE
T ss_pred             cceeccCCcCCceeEcCCc-eEEechhhccc
Confidence            4589999999999998764 89999988754

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.62  E-value=0.011  Score=46.61  Aligned_cols=39  Identities=10%  Similarity=-0.076  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHhcC-CCcccceeeeeeeCCcceEEEEecCCCCH
Q 044022           14 GSCINNITYAAQMS-HNHILKRIGCCLQTPIPILVFQSVEYGTL   56 (241)
Q Consensus        14 ~~~~~e~~~l~~l~-h~~iv~~~~~~~~~~~~~lv~e~~~~~sL   56 (241)
                      -...+|..+++.+. +.-..++++++.    -.+|+||++|.+|
T Consensus        89 idr~~E~~i~~~ls~~gl~Pkll~~~~----~g~I~efi~g~~l  128 (395)
T d1nw1a_          89 SHLVAESVIFTLLSERHLGPKLYGIFS----GGRLEEYIPSRPL  128 (395)
T ss_dssp             HHHHHHHHHHHHHHHTTSSSCEEEEET----TEEEECCCCEEEC
T ss_pred             hHHHHHHHHHHHHHhCCCCCeEEEEcC----CceEEEEeccccC
Confidence            34568999999884 433447777763    2689999987544

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.08  E-value=0.0068  Score=46.26  Aligned_cols=33  Identities=15%  Similarity=0.458  Sum_probs=28.7

Q ss_pred             CCCCceeccCCCCCeeecCCCCeEEeeccCcee
Q 044022           85 FPRPIVLRNFKTQNILFNEENVAKWFDFLLSIS  117 (241)
Q Consensus        85 ~~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~  117 (241)
                      ...+++|+|+.+.|++++.+...-|.||+.+..
T Consensus       181 L~~giIHgDl~~dNvl~~~~~v~gvIDF~~~~~  213 (316)
T d2ppqa1         181 LPAGVIHADLFQDNVFFLGDELSGLIDFYFACN  213 (316)
T ss_dssp             SCEEEECSCCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             cccccccCCcchhhhhcccccceeEeccccccc
Confidence            367899999999999999888788999998753

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=85.50  E-value=0.14  Score=38.84  Aligned_cols=30  Identities=13%  Similarity=0.140  Sum_probs=24.3

Q ss_pred             CCCceeccCCCCCeeecCCCCeEEeeccCcee
Q 044022           86 PRPIVLRNFKTQNILFNEENVAKWFDFLLSIS  117 (241)
Q Consensus        86 ~~~ivh~dl~~~nil~~~~~~~~l~df~~~~~  117 (241)
                      ..+++|+|+.+.|||++.+  ..++||+-+..
T Consensus       191 p~~liHgDlh~~NvL~~~~--~~~IDFdd~~~  220 (325)
T d1zyla1         191 TVLRLHGDCHAGNILWRDG--PMFVDLDDARN  220 (325)
T ss_dssp             CCEECCSSCSGGGEEESSS--EEECCCTTCCE
T ss_pred             CceeecCCCCcccEEEeCC--ceEEechhccc
Confidence            5678999999999999743  46899988754