Citrus Sinensis ID: 044054

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400

MASSKTVRKLQVASPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPLQGPTFGIRGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLRKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADTRERVGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGIVVTEAGFGADIGAEKFMNIKCRYSG

ccccccccccccccccccHHHHHcccccccHHHHHHHcccccccHHHcccccccccHHHHHHHcccccccEEEEEcccccccccccccccccccccccHHEEHHHHHHccccccEEEEEccccccccccccccccccccccEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccccccccccccHHHHHHHHHHcccccccccccHHHHHcccccccccccEEEEEEcccccccccccEEccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHccEEEEEccccccccccccccHHHHHHHHHHHcccccccccccccEEEEcccccHHHcccHHHHHHHHHHHHcccccEEEccccccccccccccccccccccc

ccccccccccccccccccccccccccccccHHHHHHcccccHHHEEEcccccEEEccHHHHHHccccccEEEEEEEcccccccccHHHcccccccHHHHHHHHHHHHHHHccccEEEEEccccccHHHHccccccEEccEEEEcHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccccccEcccHHHHHHHHHHccccccHHHccHHHHHHHHHccEcHHHccccEEEccccHHHccEEEccccccccccEEEcEEEHHHcHHHHHHHHcccHHHHHHHHHccEEEEEccccEEEcHHHccHHHHHHHcccccccEEEEEccccEEEEcccccccccccEccHHHHHHHHHHcccccEEEEEEccccccHHHHHHHcHHHHHc

massktvrklqvaspvpadidiansveplhISEIAQelnlkpnhydlyGKYKAKVLLSVLDELEGSADGYYVVVGEitrtplgegeitqyplgegksttTVGLCQALGAFLDKKVVTClrqplqgptfgirggaagggysqvipmdefnlhltgDIHAITAANNLLAAAIDTRIFHEASQSDKAlfnrlcppnkegersFSNIMFRRLRKlgisktkpedltpeeINRFarldidpasitWRRVMDVNDRFLRKItigqgpeekgmvretgFDISVASEIMAVLALTTSLADTRERVGKMvignskagdpitaddlgvgGALTVLMKDainptlmqtlegtpvlvhagpfaniahgnssIVADKIALklvgpggivvteagfgadigaEKFMNIKCRYSG

massktvrklqvaspvpadidIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPLQGPTFGIRGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKalfnrlcppnkegersfsniMFRRLRKlgisktkpedltpeeinrfarldidpasitwrrvmdvnDRFLRKitigqgpeekgmvRETGFDISVASEIMAVLALTTSLADTRERVGKMvignskagdpitadDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGIVVTEagfgadigaekfmnikcrysg

MASSKTVRKLQVASPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPLQGPTFGIRggaagggYSQVIPMDEFNLHLTGDIHaitaannllaaaidtRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLRKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADTRERVGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGIVVTEAGFGADIGAEKFMNIKCRYSG

******************DIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPLQGPTFGIRGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQ*DKALFNRLC***********NIMFRRLRKLGI***********EINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADTRERVGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGIVVTEAGFGADIGAEKFMNIKCR***

******V**LQVASPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPLQGPTFGIRGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLRKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADTRERVGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGIVVTEAGFGADIGAEKFMNIKCRYS*

************ASPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPLQGPTFGIRGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLRKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADTRERVGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGIVVTEAGFGADIGAEKFMNIKCRYSG

****KTVRKLQVASPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPLQGPTFGIRGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLRKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADTRERVGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGIVVTEAGFGADIGAEKFMNIKCRYS*

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		400	2.2.26 [Sep-21-2011]
Q9SPK5		634	Formate--tetrahydrofolate	yes	no	0.967	0.610	0.884	0.0
P28723		637	Formate--tetrahydrofolate	N/A	no	0.97	0.609	0.864	0.0
P11586		935	C-1-tetrahydrofolate synt	yes	no	0.95	0.406	0.710	1e-152
Q922D8		935	C-1-tetrahydrofolate synt	yes	no	0.952	0.407	0.706	1e-151
P27653		935	C-1-tetrahydrofolate synt	yes	no	0.952	0.407	0.706	1e-151
Q5R8P0		935	C-1-tetrahydrofolate synt	yes	no	0.95	0.406	0.705	1e-150
Q6UB35		978	Monofunctional C1-tetrahy	no	no	0.952	0.389	0.678	1e-138
Q0VCR7		975	Monofunctional C1-tetrahy	no	no	0.952	0.390	0.668	1e-137
Q3V3R1		977	Monofunctional C1-tetrahy	no	no	0.952	0.389	0.670	1e-136
O96553		968	C-1-tetrahydrofolate synt	yes	no	0.95	0.392	0.624	1e-131

>sp\|Q9SPK5\|FTHS_ARATH Formate--tetrahydrofolate ligase OS=Arabidopsis thaliana GN=THFS PE=1 SV=1	Back alignment and function desciption

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/397 (88%), Positives = 366/397 (92%), Gaps = 10/397 (2%)

Query: 4   SKTVRKLQVASPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDEL 63
           S + RKL+V SPVPADIDIANSVEPLHISEIA++LN+ P HYDLYGKYKAKVLLS  DEL
Sbjct: 2   SSSTRKLEVVSPVPADIDIANSVEPLHISEIAKDLNINPLHYDLYGKYKAKVLLSAFDEL 61

Query: 64  EGSADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPL 123
           +G  DGYYVVVG IT TPLGEG          KSTTTVGLCQALGA+LDKKVVTCLRQP 
Sbjct: 62  QGQEDGYYVVVGGITPTPLGEG----------KSTTTVGLCQALGAYLDKKVVTCLRQPS 111

Query: 124 QGPTFGIRGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDK 183
           QGPTFGI+GGAAGGGYSQVIPMDEFNLHLTGDIHAITA+NNLLAAAIDTRIFHE SQSDK
Sbjct: 112 QGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITASNNLLAAAIDTRIFHETSQSDK 171

Query: 184 ALFNRLCPPNKEGERSFSNIMFRRLRKLGISKTKPEDLTPEEINRFARLDIDPASITWRR 243
           ALFNRLCPPNKEG+RSFS+IMFRRL KLGISKT PE+LTPEEI +FARLDIDPASITWRR
Sbjct: 172 ALFNRLCPPNKEGKRSFSDIMFRRLTKLGISKTSPEELTPEEIKKFARLDIDPASITWRR 231

Query: 244 VMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADTRERVGKMVIG 303
           VMDVNDRFLRKITIGQGPEEKGM RETGFDISVASEIMAVLALTTSL D RER+GKMVIG
Sbjct: 232 VMDVNDRFLRKITIGQGPEEKGMTRETGFDISVASEIMAVLALTTSLGDMRERLGKMVIG 291

Query: 304 NSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVAD 363
           NSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVAD
Sbjct: 292 NSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVAD 351

Query: 364 KIALKLVGPGGIVVTEAGFGADIGAEKFMNIKCRYSG 400
           KIALKLVGPGG VVTEAGFG+DIG EKFMNIKCRYSG
Sbjct: 352 KIALKLVGPGGFVVTEAGFGSDIGTEKFMNIKCRYSG 388

Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 4EC: .EC: 3

>sp\|P28723\|FTHS_SPIOL Formate--tetrahydrofolate ligase OS=Spinacia oleracea PE=1 SV=3	Back alignment and function description

>sp\|P11586\|C1TC_HUMAN C-1-tetrahydrofolate synthase, cytoplasmic OS=Homo sapiens GN=MTHFD1 PE=1 SV=3	Back alignment and function description

>sp\|Q922D8\|C1TC_MOUSE C-1-tetrahydrofolate synthase, cytoplasmic OS=Mus musculus GN=Mthfd1 PE=1 SV=4	Back alignment and function description

>sp\|P27653\|C1TC_RAT C-1-tetrahydrofolate synthase, cytoplasmic OS=Rattus norvegicus GN=Mthfd1 PE=1 SV=3	Back alignment and function description

>sp\|Q5R8P0\|C1TC_PONAB C-1-tetrahydrofolate synthase, cytoplasmic OS=Pongo abelii GN=MTHFD1 PE=2 SV=3	Back alignment and function description

>sp\|Q6UB35\|C1TM_HUMAN Monofunctional C1-tetrahydrofolate synthase, mitochondrial OS=Homo sapiens GN=MTHFD1L PE=1 SV=1	Back alignment and function description

>sp\|Q0VCR7\|C1TM_BOVIN Monofunctional C1-tetrahydrofolate synthase, mitochondrial OS=Bos taurus GN=MTHFD1L PE=2 SV=2	Back alignment and function description

>sp\|Q3V3R1\|C1TM_MOUSE Monofunctional C1-tetrahydrofolate synthase, mitochondrial OS=Mus musculus GN=Mthfd1l PE=1 SV=2	Back alignment and function description

>sp\|O96553\|C1TC_DROME C-1-tetrahydrofolate synthase, cytoplasmic OS=Drosophila melanogaster GN=pug PE=1 SV=4	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		400
18403095		634	Formate--tetrahydrofolate ligase [Arabid	0.967	0.610	0.884	0.0
297847394		634	10-formyltetrahydrofolate synthetase [Ar	0.967	0.610	0.884	0.0
356576871		636	PREDICTED: formate--tetrahydrofolate lig	0.975	0.613	0.89	0.0
225435632		637	PREDICTED: formate--tetrahydrofolate lig	0.97	0.609	0.907	0.0
356536528		636	PREDICTED: formate--tetrahydrofolate lig	0.975	0.613	0.887	0.0
224052994		636	10-formyltetrahydrofolate synthetase [Po	0.975	0.613	0.885	0.0
2507455		637	RecName: Full=Formate--tetrahydrofolate	0.97	0.609	0.864	0.0
449462581		636	PREDICTED: formate--tetrahydrofolate lig	0.975	0.613	0.9	0.0
224073194		636	10-formyltetrahydrofolate synthetase [Po	0.972	0.611	0.882	0.0
414885692		635	TPA: formate tetrahyrofolate ligase [Zea	0.967	0.609	0.863	0.0

>gi|18403095|ref|NP_564571.1| Formate--tetrahydrofolate ligase [Arabidopsis thaliana] gi|68052257|sp|Q9SPK5.1|FTHS_ARATH RecName: Full=Formate--tetrahydrofolate ligase; AltName: Full=10-formyletrahydrofolate synthetase; Short=FHS; Short=FTHFS; AltName: Full=Formyltetrahydrofolate synthetase gi|5921663|gb|AAD56290.1|AF162279_1 10-formyltetrahydrofolate synthetase [Arabidopsis thaliana] gi|9454559|gb|AAF87882.1|AC012561_15 10-formyltetrahydrofolate synthetase [Arabidopsis thaliana] gi|12322329|gb|AAG51185.1|AC079279_6 10-formyltetrahydrofolate synthetase [Arabidopsis thaliana] gi|15451114|gb|AAK96828.1| 10-formyltetrahydrofolate synthetase [Arabidopsis thaliana] gi|20148441|gb|AAM10111.1| 10-formyltetrahydrofolate synthetase [Arabidopsis thaliana] gi|332194434|gb|AEE32555.1| Formate--tetrahydrofolate ligase [Arabidopsis thaliana]

Back alignment and taxonomy information

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/397 (88%), Positives = 366/397 (92%), Gaps = 10/397 (2%)

Query: 4   SKTVRKLQVASPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDEL 63
           S + RKL+V SPVPADIDIANSVEPLHISEIA++LN+ P HYDLYGKYKAKVLLS  DEL
Sbjct: 2   SSSTRKLEVVSPVPADIDIANSVEPLHISEIAKDLNINPLHYDLYGKYKAKVLLSAFDEL 61

Query: 64  EGSADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPL 123
           +G  DGYYVVVG IT TPLGEG          KSTTTVGLCQALGA+LDKKVVTCLRQP 
Sbjct: 62  QGQEDGYYVVVGGITPTPLGEG----------KSTTTVGLCQALGAYLDKKVVTCLRQPS 111

Query: 124 QGPTFGIRGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDK 183
           QGPTFGI+GGAAGGGYSQVIPMDEFNLHLTGDIHAITA+NNLLAAAIDTRIFHE SQSDK
Sbjct: 112 QGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITASNNLLAAAIDTRIFHETSQSDK 171

Query: 184 ALFNRLCPPNKEGERSFSNIMFRRLRKLGISKTKPEDLTPEEINRFARLDIDPASITWRR 243
           ALFNRLCPPNKEG+RSFS+IMFRRL KLGISKT PE+LTPEEI +FARLDIDPASITWRR
Sbjct: 172 ALFNRLCPPNKEGKRSFSDIMFRRLTKLGISKTSPEELTPEEIKKFARLDIDPASITWRR 231

Query: 244 VMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADTRERVGKMVIG 303
           VMDVNDRFLRKITIGQGPEEKGM RETGFDISVASEIMAVLALTTSL D RER+GKMVIG
Sbjct: 232 VMDVNDRFLRKITIGQGPEEKGMTRETGFDISVASEIMAVLALTTSLGDMRERLGKMVIG 291

Query: 304 NSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVAD 363
           NSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVAD
Sbjct: 292 NSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVAD 351

Query: 364 KIALKLVGPGGIVVTEAGFGADIGAEKFMNIKCRYSG 400
           KIALKLVGPGG VVTEAGFG+DIG EKFMNIKCRYSG
Sbjct: 352 KIALKLVGPGGFVVTEAGFGSDIGTEKFMNIKCRYSG 388

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|297847394\|ref\|XP_002891578.1\| 10-formyltetrahydrofolate synthetase [Arabidopsis lyrata subsp. lyrata] gi\|297337420\|gb\|EFH67837.1\| 10-formyltetrahydrofolate synthetase [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|356576871\|ref\|XP_003556553.1\| PREDICTED: formate--tetrahydrofolate ligase-like [Glycine max]	Back alignment and taxonomy information

>gi\|225435632\|ref\|XP_002285654.1\| PREDICTED: formate--tetrahydrofolate ligase-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356536528\|ref\|XP_003536789.1\| PREDICTED: formate--tetrahydrofolate ligase-like [Glycine max]	Back alignment and taxonomy information

>gi\|224052994\|ref\|XP_002297654.1\| 10-formyltetrahydrofolate synthetase [Populus trichocarpa] gi\|222844912\|gb\|EEE82459.1\| 10-formyltetrahydrofolate synthetase [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|2507455\|sp\|P28723.3\|FTHS_SPIOL RecName: Full=Formate--tetrahydrofolate ligase; AltName: Full=10-formyletrahydrofolate synthetase; Short=FHS; Short=FTHFS; AltName: Full=Formyltetrahydrofolate synthetase gi\|170145\|gb\|AAA34046.1\| 10-formyltetrahydrofolate synthetase [Spinacia oleracea]	Back alignment and taxonomy information

>gi\|449462581\|ref\|XP_004149019.1\| PREDICTED: formate--tetrahydrofolate ligase-like [Cucumis sativus] gi\|449502199\|ref\|XP_004161571.1\| PREDICTED: formate--tetrahydrofolate ligase-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224073194\|ref\|XP_002304017.1\| 10-formyltetrahydrofolate synthetase [Populus trichocarpa] gi\|222841449\|gb\|EEE78996.1\| 10-formyltetrahydrofolate synthetase [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|414885692\|tpg\|DAA61706.1\| TPA: formate tetrahyrofolate ligase [Zea mays]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		400
TAIR\|locus:2008101		634	THFS "10-formyltetrahydrofolat	0.967	0.610	0.831	8e-172
UNIPROTKB\|F5H2F4		1020	MTHFD1 "C-1-tetrahydrofolate s	0.95	0.372	0.659	3.2e-129
UNIPROTKB\|G3V2B8		935	MTHFD1 "C-1-tetrahydrofolate s	0.95	0.406	0.659	3.2e-129
UNIPROTKB\|P11586		935	MTHFD1 "C-1-tetrahydrofolate s	0.95	0.406	0.659	3.2e-129
UNIPROTKB\|A4FUD0		935	MTHFD1 "MTHFD1 protein" [Bos t	0.952	0.407	0.655	5.2e-129
DICTYBASE\|DDB_G0290397		638	fthS "formyltetrahydrofolate s	0.955	0.598	0.646	1.1e-128
MGI\|MGI:1342005		935	Mthfd1 "methylenetetrahydrofol	0.952	0.407	0.655	2.8e-128
RGD\|708531		935	Mthfd1 "methylenetetrahydrofol	0.952	0.407	0.655	4.6e-128
UNIPROTKB\|F1LW12		927	Mthfd1 "C-1-tetrahydrofolate s	0.952	0.411	0.655	4.6e-128
UNIPROTKB\|G3V6S5		935	Mthfd1 "Methylenetetrahydrofol	0.952	0.407	0.655	4.6e-128

TAIR\|locus:2008101 THFS "10-formyltetrahydrofolate synthetase" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1670 (592.9 bits), Expect = 8.0e-172, P = 8.0e-172
 Identities = 330/397 (83%), Positives = 344/397 (86%)

Query:     4 SKTVRKLQVASPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDEL 63
             S + RKL+V SPVPADIDIANSVEPLHISEIA++LN+ P HYDLYGKYKAKVLLS  DEL
Sbjct:     2 SSSTRKLEVVSPVPADIDIANSVEPLHISEIAKDLNINPLHYDLYGKYKAKVLLSAFDEL 61

Query:    64 EGSADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPL 123
             +G  DGYYVVVG IT TPLGEG          KSTTTVGLCQALGA+LDKKVVTCLRQP 
Sbjct:    62 QGQEDGYYVVVGGITPTPLGEG----------KSTTTVGLCQALGAYLDKKVVTCLRQPS 111

Query:   124 QGPTFGIRXXXXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDK 183
             QGPTFGI+       YSQVIPMDEFNLHLTGDIH               RIFHE SQSDK
Sbjct:   112 QGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITASNNLLAAAIDTRIFHETSQSDK 171

Query:   184 ALFNRLCPPNKEGERSFSNIMFRRLRKLGISKTKPEDLTPEEINRFARLDIDPASITWRR 243
             ALFNRLCPPNKEG+RSFS+IMFRRL KLGISKT PE+LTPEEI +FARLDIDPASITWRR
Sbjct:   172 ALFNRLCPPNKEGKRSFSDIMFRRLTKLGISKTSPEELTPEEIKKFARLDIDPASITWRR 231

Query:   244 VMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADTRERVGKMVIG 303
             VMDVNDRFLRKITIGQGPEEKGM RETGFDISVASEIMAVLALTTSL D RER+GKMVIG
Sbjct:   232 VMDVNDRFLRKITIGQGPEEKGMTRETGFDISVASEIMAVLALTTSLGDMRERLGKMVIG 291

Query:   304 NSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVAD 363
             NSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVAD
Sbjct:   292 NSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVAD 351

Query:   364 KIALKLVGPGGIVVTEAGFGADIGAEKFMNIKCRYSG 400
             KIALKLVGPGG VVTEAGFG+DIG EKFMNIKCRYSG
Sbjct:   352 KIALKLVGPGGFVVTEAGFGSDIGTEKFMNIKCRYSG 388

GO:0004329 "formate-tetrahydrofolate ligase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA;ISS

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005507 "copper ion binding" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB\|F5H2F4 MTHFD1 "C-1-tetrahydrofolate synthase, cytoplasmic" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|G3V2B8 MTHFD1 "C-1-tetrahydrofolate synthase, cytoplasmic" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|P11586 MTHFD1 "C-1-tetrahydrofolate synthase, cytoplasmic" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|A4FUD0 MTHFD1 "MTHFD1 protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0290397 fthS "formyltetrahydrofolate synthetase" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

MGI\|MGI:1342005 Mthfd1 "methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|708531 Mthfd1 "methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1LW12 Mthfd1 "C-1-tetrahydrofolate synthase, cytoplasmic" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|G3V6S5 Mthfd1 "Methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase, isoform CRA_b" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q922D8	C1TC_MOUSE	6, ., 3, ., 4, ., 3	0.7066	0.9525	0.4074	yes	no
Q5R8P0	C1TC_PONAB	6, ., 3, ., 4, ., 3	0.7058	0.95	0.4064	yes	no
P11586	C1TC_HUMAN	6, ., 3, ., 4, ., 3	0.7109	0.95	0.4064	yes	no
P28723	FTHS_SPIOL	6, ., 3, ., 4, ., 3	0.8643	0.97	0.6091	N/A	no
Q9SPK5	FTHS_ARATH	6, ., 3, ., 4, ., 3	0.8841	0.9675	0.6104	yes	no
P27653	C1TC_RAT	6, ., 3, ., 4, ., 3	0.7066	0.9525	0.4074	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.4	0.963
3rd Layer	6.3.4.3	0.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	THFS	THFS (10-FORMYLTETRAHYDROFOLATE SYNTHETASE); ATP binding / copper ion binding / formate-tetrahydrofolate ligase; 10-formyltetrahydrofolate synthetase (THFS) mRNA, complete (634 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	GDCST	aminomethyltransferase, putative; aminomethyltransferase, putative; FUNCTIONS IN- aminomethyltr [...] (408 aa)	•		•		•	•	0.995
	AT2G35040	AICARFT/IMPCHase bienzyme family protein; AICARFT/IMPCHase bienzyme family protein; FUNCTIONS I [...] (596 aa)	•		•		•	•	0.992
	PUR3	phosphoribosylglycinamide formyltransferase; N10-formyltetrahydrofolate-dependent phosphoribosy [...] (292 aa)	•				•	•	0.992
	EDA36	EDA36 (EMBRYO SAC DEVELOPMENT ARREST 37); catalytic/ glycine hydroxymethyltransferase/ pyridoxa [...] (470 aa)			•	•	•	•	0.987
	SHM2	SHM2 (SERINE HYDROXYMETHYLTRANSFERASE 2); catalytic/ glycine hydroxymethyltransferase/ pyridoxa [...] (533 aa)			•	•	•	•	0.986
	SHM3	SHM3 (SERINE HYDROXYMETHYLTRANSFERASE 3); catalytic/ glycine hydroxymethyltransferase/ pyridoxa [...] (529 aa)			•	•	•	•	0.986
	SHM4	SHM4 (serine hydroxymethyltransferase 4); catalytic/ glycine hydroxymethyltransferase/ pyridoxa [...] (471 aa)			•	•	•	•	0.986
	SHM1	SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1); glycine hydroxymethyltransferase/ poly(U) bindin [...] (517 aa)			•	•	•	•	0.984
	AT2G38660	tetrahydrofolate dehydrogenase/cyclohydrolase, putative; tetrahydrofolate dehydrogenase/cyclohy [...] (352 aa)	•	•			•	•	0.981
	SHM7	SHM7 (serine hydroxymethyltransferase 7); catalytic/ glycine hydroxymethyltransferase/ pyridoxa [...] (598 aa)				•	•	•	0.978

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		400
PLN02759		637	PLN02759, PLN02759, Formate--tetrahydrofolate liga	0.0
PTZ00386		625	PTZ00386, PTZ00386, formyl tetrahydrofolate synthe	0.0
pfam01268		557	pfam01268, FTHFS, Formate--tetrahydrofolate ligase	0.0
cd00477		524	cd00477, FTHFS, Formyltetrahydrofolate synthetase	0.0
COG2759		554	COG2759, MIS1, Formyltetrahydrofolate synthetase [	1e-172
PRK13505		557	PRK13505, PRK13505, formate--tetrahydrofolate liga	1e-163
PRK13506		578	PRK13506, PRK13506, formate--tetrahydrofolate liga	1e-159
PRK13507		587	PRK13507, PRK13507, formate--tetrahydrofolate liga	1e-120

>gnl\|CDD\|178359 PLN02759, PLN02759, Formate--tetrahydrofolate ligase	Back alignment and domain information

 Score =  774 bits (2001), Expect = 0.0
 Identities = 338/400 (84%), Positives = 363/400 (90%), Gaps = 10/400 (2%)

Query: 1   MASSKTVRKLQVASPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVL 60
           M  S + RKL+V SPVPADIDIA SVEPLHISEIA+ L L P+ YDLYGKYKAKVLLSV 
Sbjct: 1   MTMSSSRRKLEVKSPVPADIDIAQSVEPLHISEIAKALGLLPDEYDLYGKYKAKVLLSVR 60

Query: 61  DELEGSADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLR 120
           D L G+ DGYYVVV  IT TPLGEG          KSTTT+GLCQALGA+LDKKVVTCLR
Sbjct: 61  DRLAGAPDGYYVVVAGITPTPLGEG----------KSTTTIGLCQALGAYLDKKVVTCLR 110

Query: 121 QPLQGPTFGIRGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQ 180
           QP QGPTFGI+GGAAGGGYSQVIPM+EFNLHLTGDIHAITAANNLLAAAIDTR+FHEA+Q
Sbjct: 111 QPSQGPTFGIKGGAAGGGYSQVIPMEEFNLHLTGDIHAITAANNLLAAAIDTRVFHEATQ 170

Query: 181 SDKALFNRLCPPNKEGERSFSNIMFRRLRKLGISKTKPEDLTPEEINRFARLDIDPASIT 240
           SDKALFNRLCP NKEG+RSF+ +MFRRL+KLGISKT P++LTPEE  +FARLDIDPASIT
Sbjct: 171 SDKALFNRLCPANKEGKRSFAAVMFRRLKKLGISKTDPDELTPEERKKFARLDIDPASIT 230

Query: 241 WRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADTRERVGKM 300
           WRRVMDVNDRFLRKIT+GQGPEEKGM RETGFDI+VASEIMAVLALTTSLAD RER+GKM
Sbjct: 231 WRRVMDVNDRFLRKITVGQGPEEKGMTRETGFDITVASEIMAVLALTTSLADMRERLGKM 290

Query: 301 VIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSI 360
           VIGNSKAG+P+TADDLGVGGALTVLMKDAI+PTLMQTLEGTPVLVHAGPFANIAHGNSSI
Sbjct: 291 VIGNSKAGEPVTADDLGVGGALTVLMKDAIHPTLMQTLEGTPVLVHAGPFANIAHGNSSI 350

Query: 361 VADKIALKLVGPGGIVVTEAGFGADIGAEKFMNIKCRYSG 400
           VAD+IALKLVGPGG VVTEAGFGADIG EKFMNIKCRYSG
Sbjct: 351 VADQIALKLVGPGGFVVTEAGFGADIGTEKFMNIKCRYSG 390

Length = 637

>gnl\|CDD\|240394 PTZ00386, PTZ00386, formyl tetrahydrofolate synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|216402 pfam01268, FTHFS, Formate--tetrahydrofolate ligase	Back alignment and domain information

>gnl\|CDD\|238266 cd00477, FTHFS, Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate	Back alignment and domain information

>gnl\|CDD\|225354 COG2759, MIS1, Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|237403 PRK13505, PRK13505, formate--tetrahydrofolate ligase; Provisional	Back alignment and domain information

>gnl\|CDD\|237404 PRK13506, PRK13506, formate--tetrahydrofolate ligase; Provisional	Back alignment and domain information

>gnl\|CDD\|184098 PRK13507, PRK13507, formate--tetrahydrofolate ligase; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		400
PLN02759		637	Formate--tetrahydrofolate ligase	100.0
PTZ00386		625	formyl tetrahydrofolate synthetase; Provisional	100.0
KOG4230		935	consensus C1-tetrahydrofolate synthase [Coenzyme t	100.0
PRK13507		587	formate--tetrahydrofolate ligase; Provisional	100.0
PF01268		557	FTHFS: Formate--tetrahydrofolate ligase; InterPro:	100.0
COG2759		554	MIS1 Formyltetrahydrofolate synthetase [Nucleotide	100.0
PRK13506		578	formate--tetrahydrofolate ligase; Provisional	100.0
PRK13505		557	formate--tetrahydrofolate ligase; Provisional	100.0
cd00477		524	FTHFS Formyltetrahydrofolate synthetase (FTHFS) ca	100.0
TIGR03029		274	EpsG chain length determinant protein tyrosine kin	97.38
TIGR01007		204	eps_fam capsular exopolysaccharide family. This mo	96.75
CHL00175		281	minD septum-site determining protein; Validated	96.62
TIGR03018		207	pepcterm_TyrKin exopolysaccharide/PEPCTERM locus t	96.6
TIGR03453		387	partition_RepA plasmid partitioning protein RepA.	96.55
COG0489		265	Mrp ATPases involved in chromosome partitioning [C	96.47
PRK11519		719	tyrosine kinase; Provisional	96.45
TIGR01005		754	eps_transp_fam exopolysaccharide transport protein	96.28
PRK09841		726	cryptic autophosphorylating protein tyrosine kinas	96.22
PRK13705		388	plasmid-partitioning protein SopA; Provisional	96.15
PHA02519		387	plasmid partition protein SopA; Reviewed	96.14
TIGR01968		261	minD_bact septum site-determining protein MinD. Th	96.02
PRK13869		405	plasmid-partitioning protein RepA; Provisional	95.72
TIGR00347		166	bioD dethiobiotin synthase. Dethiobiotin synthase	95.68
cd02033		329	BchX Chlorophyllide reductase converts chlorophyll	95.62
COG2894		272	MinD Septum formation inhibitor-activating ATPase	95.14
cd00550		254	ArsA_ATPase Oxyanion-translocating ATPase (ArsA).	94.95
cd02037		169	MRP-like MRP (Multiple Resistance and pH adaptatio	94.81
COG2805		353	PilT Tfp pilus assembly protein, pilus retraction	94.68
TIGR03815		322	CpaE_hom_Actino helicase/secretion neighborhood Cp	94.6
cd02036		179	MinD Bacterial cell division requires the formatio	94.53
PRK11670		369	antiporter inner membrane protein; Provisional	94.5
PRK00698		205	tmk thymidylate kinase; Validated	94.43
PRK13185		270	chlL protochlorophyllide reductase iron-sulfur ATP	94.29
TIGR01969		251	minD_arch cell division ATPase MinD, archaeal. Thi	94.28
PLN02924		220	thymidylate kinase	94.2
PRK10818		270	cell division inhibitor MinD; Provisional	94.15
TIGR03371		246	cellulose_yhjQ cellulose synthase operon protein Y	94.14
PRK13230		279	nitrogenase reductase-like protein; Reviewed	94.02
PF01656		195	CbiA: CobQ/CobB/MinD/ParA nucleotide binding domai	93.83
PRK10037		250	cell division protein; Provisional	93.81
cd02117		212	NifH_like This family contains the NifH (iron prot	93.7
TIGR00041		195	DTMP_kinase thymidylate kinase. Function: phosphor	93.65
cd02040		270	NifH NifH gene encodes component II (iron protein)	93.58
cd01672		200	TMPK Thymidine monophosphate kinase (TMPK), also k	93.54
TIGR01287		275	nifH nitrogenase iron protein. This model describe	93.5
PRK13235		274	nifH nitrogenase reductase; Reviewed	93.43
COG0125		208	Tmk Thymidylate kinase [Nucleotide transport and m	93.38
TIGR01281		268	DPOR_bchL light-independent protochlorophyllide re	93.32
cd02032		267	Bchl_like This family of proteins contains bchL an	93.28
PF02367		123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	93.1
cd01983		99	Fer4_NifH The Fer4_NifH superfamily contains a var	93.04
PRK13973		213	thymidylate kinase; Provisional	92.98
PF09140		261	MipZ: ATPase MipZ; InterPro: IPR015223 Cell divisi	92.66
PHA02518		211	ParA-like protein; Provisional	92.45
PF06564		243	YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ p	92.4
TIGR02016		296	BchX chlorophyllide reductase iron protein subunit	92.34
PRK13232		273	nifH nitrogenase reductase; Reviewed	92.31
cd03110		179	Fer4_NifH_child This protein family's function is	92.21
CHL00072		290	chlL photochlorophyllide reductase subunit L	92.04
PF02374		305	ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_	91.64
PRK13234		295	nifH nitrogenase reductase; Reviewed	91.48
TIGR00064		272	ftsY signal recognition particle-docking protein F	91.2
PRK13233		275	nifH nitrogenase reductase; Reviewed	91.05
PRK00090		222	bioD dithiobiotin synthetase; Reviewed	90.9
PRK13236		296	nitrogenase reductase; Reviewed	90.8
PRK10646		153	ADP-binding protein; Provisional	90.76
PRK13231		264	nitrogenase reductase-like protein; Reviewed	90.64
PRK00300		205	gmk guanylate kinase; Provisional	90.57
PRK13976		209	thymidylate kinase; Provisional	90.38
PF02223		186	Thymidylate_kin: Thymidylate kinase; InterPro: IPR	90.37
TIGR00150		133	HI0065_YjeE ATPase, YjeE family. Members of this f	89.93
PRK13768		253	GTPase; Provisional	89.36
PRK13849		231	putative crown gall tumor protein VirC1; Provision	89.24
PRK07933		213	thymidylate kinase; Validated	88.93
cd02042		104	ParA ParA and ParB of Caulobacter crescentus belon	88.74
PF13500		199	AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R	88.7
PRK00889		175	adenylylsulfate kinase; Provisional	88.55
COG0802		149	Predicted ATPase or kinase [General function predi	88.42
cd03111		106	CpaE_like This protein family consists of proteins	88.3
PF13614		157	AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ	88.08
COG1192		259	Soj ATPases involved in chromosome partitioning [C	88.02
PRK08233		182	hypothetical protein; Provisional	87.96
PRK00131		175	aroK shikimate kinase; Reviewed	87.82
COG0003		322	ArsA Predicted ATPase involved in chromosome parti	87.8
cd02035		217	ArsA ArsA ATPase functionas as an efflux pump loca	87.76
TIGR03263		180	guanyl_kin guanylate kinase. Members of this famil	87.73
PRK14974		336	cell division protein FtsY; Provisional	87.58
PRK10416		318	signal recognition particle-docking protein FtsY;	87.39
PRK04296		190	thymidine kinase; Provisional	87.31
PTZ00301		210	uridine kinase; Provisional	86.77
PRK10436		462	hypothetical protein; Provisional	86.56
COG2804		500	PulE Type II secretory pathway, ATPase PulE/Tfp pi	86.44
PRK05480		209	uridine/cytidine kinase; Provisional	86.17
PRK01077		451	cobyrinic acid a,c-diamide synthase; Validated	85.88
smart00763		361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	85.66
cd02025		220	PanK Pantothenate kinase (PanK) catalyzes the phos	85.54
PRK12374		231	putative dithiobiotin synthetase; Provisional	85.27
PRK05541		176	adenylylsulfate kinase; Provisional	84.51
PRK06278		476	cobyrinic acid a,c-diamide synthase; Validated	83.66
PRK00784		488	cobyric acid synthase; Provisional	83.26
PF01583		156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	83.11
cd03109		134	DTBS Dethiobiotin synthetase (DTBS) is the penulti	83.09
cd02038		139	FleN-like FleN is a member of the Fer4_NifH superf	82.99
TIGR03499		282	FlhF flagellar biosynthetic protein FlhF.	82.96
TIGR02525		372	plasmid_TraJ plasmid transfer ATPase TraJ. Members	82.5
cd03115		173	SRP The signal recognition particle (SRP) mediates	82.45
TIGR01420		343	pilT_fam pilus retraction protein PilT. This model	82.36
TIGR00379		449	cobB cobyrinic acid a,c-diamide synthase. This mod	81.97
PRK10867		433	signal recognition particle protein; Provisional	81.97
TIGR02533		486	type_II_gspE general secretory pathway protein E.	81.75
TIGR02524		358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	81.55
PF07015		231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	81.5
COG1797		451	CobB Cobyrinic acid a,c-diamide synthase [Coenzyme	81.13
PRK06696		223	uridine kinase; Validated	81.03
PF13207		121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	80.34
TIGR00235		207	udk uridine kinase. Model contains a number of lon	80.2

>PLN02759 Formate--tetrahydrofolate ligase	Back alignment and domain information

Probab=100.00  E-value=2.2e-192  Score=1466.62  Aligned_cols=388  Identities=87%  Similarity=1.317  Sum_probs=381.4

Q ss_pred             CCCCCcCcccCCCCCCcHHHHccCCCCCHHHHHHHcCCCCcchhcccCceeeecchhhhhhcCCCCCcEEEEeccCCCCC
Q 044054            3 SSKTVRKLQVASPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGEITRTPL   82 (400)
Q Consensus         3 ~~~~~~~l~~~~pm~sDieIa~~~~~~pI~eiA~~lGL~~dele~YG~yKAKv~l~~l~~~~~~~~Gk~VlVTaItPTP~   82 (400)
                      -|....++.++.||||||||||+++++||++||+++||++|||||||+|||||+++++++++++|+|||||||||||||+
T Consensus         3 ~~~~~~~~~~~~~~~sDieIa~~~~~~~I~~iA~~lgl~~~~le~YG~ykAKi~l~~l~~~~~~~~gklIlVTaitPTP~   82 (637)
T PLN02759          3 MSSSRRKLEVKSPVPADIDIAQSVEPLHISEIAKALGLLPDEYDLYGKYKAKVLLSVRDRLAGAPDGYYVVVAGITPTPL   82 (637)
T ss_pred             CcCCCCCCCCCCCCCCHHHHHhhCCCcCHHHHHHHcCCChhhhccCCCcceEEcHHHHhhhccCCCCcEEEEEecCCCCC
Confidence            34445567889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcCcCCCccchhHHHHHHHHhhhcCCcEEEEecCCCCCCccccccCcCCCCceeeecCcccccccchhhhHHHHH
Q 044054           83 GEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPLQGPTFGIRGGAAGGGYSQVIPMDEFNLHLTGDIHAITAA  162 (400)
Q Consensus        83 ~~~~~~~~~~GEGKTTttiGL~~aL~~~lgk~~~~~lRqPS~GP~FGiKGGAaGGGysQviPmeeiNLHfTGD~HAItaA  162 (400)
                                |||||||||||+|||++|+||++++|||||||||||||||||||||||||+|||||||||||||||||||
T Consensus        83 ----------GEGKTTttIGL~~aL~~~lgk~~~~~lRePSlGP~FGiKGGAaGGGysQv~Pme~iNLHfTGD~hAItaA  152 (637)
T PLN02759         83 ----------GEGKSTTTIGLCQALGAYLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMEEFNLHLTGDIHAITAA  152 (637)
T ss_pred             ----------CCCchhHHHHHHHHHHHHhCCeeEEEeecCCcCCcCCcccccCCCcccccccHhhhcccccchHHHHHHH
Confidence                      9999999999999997569999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHhhhhcccccChhHhhhhcCCCCCcCCcchhHHHHHHHHHhcCCCCCCCCCCHHHhhhhccCCCCCCceeee
Q 044054          163 NNLLAAAIDTRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLRKLGISKTKPEDLTPEEINRFARLDIDPASITWR  242 (400)
Q Consensus       163 ~NLlaA~idn~i~~~~~~~~~~l~~rl~p~~~~g~r~f~~~~~~rl~klgi~~~~p~~lt~ee~~~~~~L~IDp~~I~w~  242 (400)
                      ||||+|+|||||||+|+|+|++||+||||..++|+|+|+++|+|||+||||+||||++|||||+++|++|+|||++|+|+
T Consensus       153 ~NLlaA~idn~i~~~n~~~~~~l~~~l~p~~~~~~r~~~~~~~~rl~~l~i~~~~p~~lt~~e~~~~~~L~IDp~~I~w~  232 (637)
T PLN02759        153 NNLLAAAIDTRVFHEATQSDKALFNRLCPANKEGKRSFAAVMFRRLKKLGISKTDPDELTPEERKKFARLDIDPASITWR  232 (637)
T ss_pred             HHHHHHHHHHHHhhccccchhhhhhccccccccccccccHHHHHHHHhhccCcCCccccCHHHhhhhhccCcCcceeEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCcccccceeeccCCCCCCcceecceeeeehhHHHHHHHhcCCHHHHHHHhcCcEEeecCCCCceeccccCcchhH
Q 044054          243 RVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADTRERVGKMVIGNSKAGDPITADDLGVGGAL  322 (400)
Q Consensus       243 Rv~D~NDR~LR~I~iG~g~~~~G~~re~gFdItvASEiMAIL~La~dl~Dlr~Rlg~ivva~~~~g~PVta~DL~~~GAm  322 (400)
                      ||||||||+||+|+||+|++++|++||+|||||||||||||||||+|++|||+|||||||||++||+||||+||+|+|||
T Consensus       233 RvlD~NDR~LR~I~vGlgg~~~G~~Re~gFdITvASEiMAILcLa~dl~Dlk~Rlg~ivvg~~~~g~pVta~DL~~~GAm  312 (637)
T PLN02759        233 RVMDVNDRFLRKITVGQGPEEKGMTRETGFDITVASEIMAVLALTTSLADMRERLGKMVIGNSKAGEPVTADDLGVGGAL  312 (637)
T ss_pred             eeccccchhhhceeeCcCCCCCCCcccCCceeeHHHHHHHHHHHcCCHHHHHHHHhCEEEEEcCCCCceeHHHcCchHhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhccCCCcceeecCceeEEeccccchhcccCchHHHHHHHHHhcCCCCeEEeecccccCcccccccccccccCC
Q 044054          323 TVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGIVVTEAGFGADIGAEKFMNIKCRYSG  400 (400)
Q Consensus       323 t~LLkdAikPnLvQTlEgtP~~VH~GPFANIAhG~nSiiA~~~aLklag~~dyvVTEAGFGaDlG~EKF~nIkcr~sg  400 (400)
                      |+|||||||||||||+|||||||||||||||||||||||||++||||+|.+||||||||||||||||||||||||++|
T Consensus       313 t~LLkDAikPNLvQTlEgtPa~vHgGPFANIAhG~nSviAtk~ALkla~~~dyvVTEAGFGaDlGaEKF~dIkcR~~g  390 (637)
T PLN02759        313 TVLMKDAIHPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADQIALKLVGPGGFVVTEAGFGADIGTEKFMNIKCRYSG  390 (637)
T ss_pred             HHHHHhhhCccceeecCCCceEEecCCcccccccchHHHHHHHHHhhcCCCCeEEEecccCCCCchhheecccccccC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999987

>PTZ00386 formyl tetrahydrofolate synthetase; Provisional	Back alignment and domain information

>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]	Back alignment and domain information

>PRK13507 formate--tetrahydrofolate ligase; Provisional	Back alignment and domain information

>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6	Back alignment and domain information

>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]	Back alignment and domain information

>PRK13506 formate--tetrahydrofolate ligase; Provisional	Back alignment and domain information

>PRK13505 formate--tetrahydrofolate ligase; Provisional	Back alignment and domain information

>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate	Back alignment and domain information

>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG	Back alignment and domain information

>TIGR01007 eps_fam capsular exopolysaccharide family	Back alignment and domain information

>CHL00175 minD septum-site determining protein; Validated	Back alignment and domain information

>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase	Back alignment and domain information

>TIGR03453 partition_RepA plasmid partitioning protein RepA	Back alignment and domain information

>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	Back alignment and domain information

>PRK11519 tyrosine kinase; Provisional	Back alignment and domain information

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family	Back alignment and domain information

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional	Back alignment and domain information

>PRK13705 plasmid-partitioning protein SopA; Provisional	Back alignment and domain information

>PHA02519 plasmid partition protein SopA; Reviewed	Back alignment and domain information

>TIGR01968 minD_bact septum site-determining protein MinD	Back alignment and domain information

>PRK13869 plasmid-partitioning protein RepA; Provisional	Back alignment and domain information

>TIGR00347 bioD dethiobiotin synthase	Back alignment and domain information

>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring	Back alignment and domain information

>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]	Back alignment and domain information

>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA)	Back alignment and domain information

>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily	Back alignment and domain information

>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]	Back alignment and domain information

>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein	Back alignment and domain information

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell	Back alignment and domain information

>PRK11670 antiporter inner membrane protein; Provisional	Back alignment and domain information

>PRK00698 tmk thymidylate kinase; Validated	Back alignment and domain information

>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional	Back alignment and domain information

>TIGR01969 minD_arch cell division ATPase MinD, archaeal	Back alignment and domain information

>PLN02924 thymidylate kinase	Back alignment and domain information

>PRK10818 cell division inhibitor MinD; Provisional	Back alignment and domain information

>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ	Back alignment and domain information

>PRK13230 nitrogenase reductase-like protein; Reviewed	Back alignment and domain information

>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases	Back alignment and domain information

>PRK10037 cell division protein; Provisional	Back alignment and domain information

>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase	Back alignment and domain information

>TIGR00041 DTMP_kinase thymidylate kinase	Back alignment and domain information

>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase	Back alignment and domain information

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor	Back alignment and domain information

>TIGR01287 nifH nitrogenase iron protein	Back alignment and domain information

>PRK13235 nifH nitrogenase reductase; Reviewed	Back alignment and domain information

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]	Back alignment and domain information

>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein	Back alignment and domain information

>cd02032 Bchl_like This family of proteins contains bchL and chlL	Back alignment and domain information

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop	Back alignment and domain information

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain	Back alignment and domain information

>PRK13973 thymidylate kinase; Provisional	Back alignment and domain information

>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments	Back alignment and domain information

>PHA02518 ParA-like protein; Provisional	Back alignment and domain information

>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon	Back alignment and domain information

>TIGR02016 BchX chlorophyllide reductase iron protein subunit X	Back alignment and domain information

>PRK13232 nifH nitrogenase reductase; Reviewed	Back alignment and domain information

>cd03110 Fer4_NifH_child This protein family's function is unkown	Back alignment and domain information

>CHL00072 chlL photochlorophyllide reductase subunit L	Back alignment and domain information

>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B	Back alignment and domain information

>PRK13234 nifH nitrogenase reductase; Reviewed	Back alignment and domain information

>TIGR00064 ftsY signal recognition particle-docking protein FtsY	Back alignment and domain information

>PRK13233 nifH nitrogenase reductase; Reviewed	Back alignment and domain information

>PRK00090 bioD dithiobiotin synthetase; Reviewed	Back alignment and domain information

>PRK13236 nitrogenase reductase; Reviewed	Back alignment and domain information

>PRK10646 ADP-binding protein; Provisional	Back alignment and domain information

>PRK13231 nitrogenase reductase-like protein; Reviewed	Back alignment and domain information

>PRK00300 gmk guanylate kinase; Provisional	Back alignment and domain information

>PRK13976 thymidylate kinase; Provisional	Back alignment and domain information

>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2	Back alignment and domain information

>TIGR00150 HI0065_YjeE ATPase, YjeE family	Back alignment and domain information

>PRK13768 GTPase; Provisional	Back alignment and domain information

>PRK13849 putative crown gall tumor protein VirC1; Provisional	Back alignment and domain information

>PRK07933 thymidylate kinase; Validated	Back alignment and domain information

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation	Back alignment and domain information

>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A	Back alignment and domain information

>PRK00889 adenylylsulfate kinase; Provisional	Back alignment and domain information

>COG0802 Predicted ATPase or kinase [General function prediction only]	Back alignment and domain information

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster	Back alignment and domain information

>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D	Back alignment and domain information

>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	Back alignment and domain information

>PRK08233 hypothetical protein; Provisional	Back alignment and domain information

>PRK00131 aroK shikimate kinase; Reviewed	Back alignment and domain information

>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]	Back alignment and domain information

>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell	Back alignment and domain information

>TIGR03263 guanyl_kin guanylate kinase	Back alignment and domain information

>PRK14974 cell division protein FtsY; Provisional	Back alignment and domain information

>PRK10416 signal recognition particle-docking protein FtsY; Provisional	Back alignment and domain information

>PRK04296 thymidine kinase; Provisional	Back alignment and domain information

>PTZ00301 uridine kinase; Provisional	Back alignment and domain information

>PRK10436 hypothetical protein; Provisional	Back alignment and domain information

>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]	Back alignment and domain information

>PRK05480 uridine/cytidine kinase; Provisional	Back alignment and domain information

>PRK01077 cobyrinic acid a,c-diamide synthase; Validated	Back alignment and domain information

>smart00763 AAA_PrkA PrkA AAA domain	Back alignment and domain information

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway	Back alignment and domain information

>PRK12374 putative dithiobiotin synthetase; Provisional	Back alignment and domain information

>PRK05541 adenylylsulfate kinase; Provisional	Back alignment and domain information

>PRK06278 cobyrinic acid a,c-diamide synthase; Validated	Back alignment and domain information

>PRK00784 cobyric acid synthase; Provisional	Back alignment and domain information

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases	Back alignment and domain information

>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms	Back alignment and domain information

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily	Back alignment and domain information

>TIGR03499 FlhF flagellar biosynthetic protein FlhF	Back alignment and domain information

>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ	Back alignment and domain information

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes	Back alignment and domain information

>TIGR01420 pilT_fam pilus retraction protein PilT	Back alignment and domain information

>TIGR00379 cobB cobyrinic acid a,c-diamide synthase	Back alignment and domain information

>PRK10867 signal recognition particle protein; Provisional	Back alignment and domain information

>TIGR02533 type_II_gspE general secretory pathway protein E	Back alignment and domain information

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB	Back alignment and domain information

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins	Back alignment and domain information

>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]	Back alignment and domain information

>PRK06696 uridine kinase; Validated	Back alignment and domain information

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A	Back alignment and domain information

>TIGR00235 udk uridine kinase	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		400
1eg7_A		557	The Crystal Structure Of Formyltetrahydrofolate Syn		6e-57
1fpm_A		557	Monovalent Cation Binding Sites In N10-formyltetrah		6e-55
3do6_A		543	Crystal Structure Of Putative Formyltetrahydrofolat		8e-42
2eo2_A		71	Solution Structure Of The Insertion Region (510-573		3e-15

>pdb|1EG7|A Chain A, The Crystal Structure Of Formyltetrahydrofolate Synthetase From Moorella Thermoacetica Length = 557

Back alignment and structure

Iteration: 1

Score = 218 bits (554), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 145/393 (36%), Positives = 194/393 (49%), Gaps = 78/393 (19%) Query: 14 SPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVV 73 S VP+DI+IA + + + E+A+ L ++ + +LYGKYKAK+ L V L+ DG ++ Sbjct: 2 SKVPSDIEIAQAAKMKPVMELARGLGIQEDEVELYGKYKAKISLDVYRRLKDKPDGKLIL 61 Query: 74 VGEITRTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPLQGPTFGIRXX 133 V IT T P GEGK+TT+VGL AL A L K+V+ CLR+P GP+FGI+ Sbjct: 62 VTAITPT----------PAGEGKTTTSVGLTDAL-ARLGKRVMVCLREPSLGPSFGIKGG 110 Query: 134 XXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPN 193 Y+QV+PM++ NLH TGDIH + Q L P Sbjct: 111 AAGGGYAQVVPMEDINLHFTGDIHAVTYAHNLLAAMVDNHL-----QQGNVLN---IDPR 162 Query: 194 KEGERSFSNIMFRRLRKLGISKTKPEDLTPEEINRFARLDIDPAS------ITWRRVMDV 247 R ++ R LR + I + P E DI AS +MD+ Sbjct: 163 TITWRRVIDLNERALRNIVIGLGGKANGVPRETG----FDISVASEVMACLCLASDLMDL 218 Query: 248 NDRFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADTRERVGKMVIGNSKA 307 +RF RK+ +G + Sbjct: 219 KERFSRKV----------------------------------------------VGYTYD 232 Query: 308 GDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIAL 367 G P+TA DL G++ +LMKDAI P L+QTLE TP +H GPFANIAHG +SI+A K AL Sbjct: 233 GKPVTAGDLEAQGSMALLMKDAIKPNLVQTLENTPAFIHGGPFANIAHGCNSIIATKTAL 292 Query: 368 KLVGPGGIVVTEAGFGADIGAEKFMNIKCRYSG 400 KL VVTEAGFGAD+GAEKF ++KCRY+G Sbjct: 293 KL---ADYVVTEAGFGADLGAEKFYDVKCRYAG 322

PyMOL of 1eg7

>pdb|1FPM|A Chain A, Monovalent Cation Binding Sites In N10-formyltetrahydrofolate Synthetase From Moorella Thermoacetica Length = 557

Back alignment and structure

>pdb|3DO6|A Chain A, Crystal Structure Of Putative Formyltetrahydrofolate Synthetase (Tm1766) From Thermotoga Maritima At 1.85 A Resolution Length = 543

Back alignment and structure

>pdb|2EO2|A Chain A, Solution Structure Of The Insertion Region (510-573) Of Fthfs Domain From Mouse Methylenetetrahydrofolate Dehydrogenase (Nadp+ Dependent) 1-Like Protein Length = 71

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		400
3pzx_A		557	Formate--tetrahydrofolate ligase; HET: TOE; 2.20A	1e-177
3do6_A		543	Formate--tetrahydrofolate ligase; TM1766, putative	1e-172
2eo2_A		71	Adult MALE hypothalamus cDNA, riken FULL-length en	3e-36
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06

>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} Length = 543	Back alignment and structure

>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus} Length = 71	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		400
3do6_A		543	Formate--tetrahydrofolate ligase; TM1766, putative	100.0
3pzx_A		557	Formate--tetrahydrofolate ligase; HET: TOE; 2.20A	100.0
2eo2_A		71	Adult MALE hypothalamus cDNA, riken FULL-length en	99.97
3cio_A		299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	97.27
3bfv_A		271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	97.21
3la6_A		286	Tyrosine-protein kinase WZC; P-loop protein, nucle	97.02
1g3q_A		237	MIND ATPase, cell division inhibitor; alpha-beta-a	96.5
3q9l_A		260	Septum site-determining protein MIND; ATPase, bact	96.48
3zq6_A		324	Putative arsenical pump-driving ATPase; tail-ancho	96.44
1byi_A		224	Dethiobiotin synthase; biotin synthesis, cyclo-lig	96.36
1hyq_A		263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	96.32
3end_A		307	Light-independent protochlorophyllide reductase ir	96.12
3ea0_A		245	ATPase, para family; alpha-beta-alpha sandwich, st	96.03
3k9g_A		267	PF-32 protein; ssgcid, SBRI, decode biostructures,	95.61
2ph1_A		262	Nucleotide-binding protein; alpha-beta protein, st	95.58
2wwf_A		212	Thymidilate kinase, putative; transferase, malaria	95.53
1wcv_1		257	SOJ, segregation protein; ATPase, bacterial, chrom	95.47
4dzz_A		206	Plasmid partitioning protein PARF; deviant walker	95.41
2woj_A		354	ATPase GET3; tail-anchored, membrane protein, targ	95.31
4tmk_A		213	Protein (thymidylate kinase); ATP:DTMP phosphotran	95.19
2woo_A		329	ATPase GET3; tail-anchored, membrane protein, targ	95.14
3fkq_A		373	NTRC-like two-domain protein; RER070207001320, str	95.09
1nn5_A		215	Similar to deoxythymidylate kinase (thymidylate K;	94.99
3of5_A		228	Dethiobiotin synthetase; structural genomics, cent	94.94
3lv8_A		236	DTMP kinase, thymidylate kinase; structural genomi	94.85
3io3_A		348	DEHA2D07832P; chaperone, membrane traffic, ATPase;	94.78
3kjh_A		254	CO dehydrogenase/acetyl-COA synthase complex, acce	94.75
2oze_A		298	ORF delta'; para, walker type atpases, DNA segrega	94.68
3ug7_A		349	Arsenical pump-driving ATPase; tail-anchored, memb	94.56
3ld9_A		223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	94.56
3qxc_A		242	Dethiobiotin synthetase; DTBS, structural genomics	94.41
2xj4_A		286	MIPZ; replication, cell division, ATPase, WACA; 1.	94.31
3iqw_A		334	Tail-anchored protein targeting factor GET3; ATPas	94.29
4edh_A		213	DTMP kinase, thymidylate kinase; structural genomi	94.21
3fwy_A		314	Light-independent protochlorophyllide reductase I	94.18
1ihu_A		589	Arsenical pump-driving ATPase; aluminum fluoride,	93.94
3v9p_A		227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	93.93
3igf_A		374	ALL4481 protein; two-domained protein consisting o	93.91
3ez2_A		398	Plasmid partition protein A; type IA, DNA binding,	93.81
3ez9_A		403	Para; DNA binding, winged-HTH, partition, biosynth	93.58
3fgn_A		251	Dethiobiotin synthetase; biotin biosynthesis, BIOD	93.54
3cwq_A		209	Para family chromosome partitioning protein; alpha	93.48
1cp2_A		269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	93.4
3pg5_A		361	Uncharacterized protein; structural genomics, PSI-	93.08
2plr_A		213	DTMP kinase, probable thymidylate kinase; TMP-bind	93.05
2afh_E		289	Nitrogenase iron protein 1; nitrogen fixation, iro	93.04
2z0h_A		197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	92.7
2yvu_A		186	Probable adenylyl-sulfate kinase; transferase, str	91.98
4hlc_A		205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	91.23
2qor_A		204	Guanylate kinase; phosphotransferase, purine metab	91.04
2xxa_A		433	Signal recognition particle protein; protein trans	90.83
1zu4_A		320	FTSY; GTPase, signal recognition particle, SRP, re	90.66
3tmk_A		216	Thymidylate kinase; phosphotransferase; HET: T5A;	90.64
4eaq_A		229	DTMP kinase, thymidylate kinase; structural genomi	89.41
1qhx_A		178	CPT, protein (chloramphenicol phosphotransferase);	89.26
2ocp_A		241	DGK, deoxyguanosine kinase; protein-nucleotide com	89.19
2v54_A		204	DTMP kinase, thymidylate kinase; nucleotide biosyn	89.12
2pbr_A		195	DTMP kinase, thymidylate kinase; transferase, nucl	88.42
2rhm_A		193	Putative kinase; P-loop containing nucleoside trip	88.38
1kht_A		192	Adenylate kinase; phosphotransferase, signaling pr	87.96
3dm5_A		443	SRP54, signal recognition 54 kDa protein; protein-	87.82
1vma_A		306	Cell division protein FTSY; TM0570, structural gen	87.54
2r8r_A		228	Sensor protein; KDPD, PFAM02702, MCSG, structural	87.3
1g5t_A		196	COB(I)alamin adenosyltransferase; P-loop protein,	87.2
2vli_A		183	Antibiotic resistance protein; transferase, tunica	87.17
2pez_A		179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	86.79
2px0_A		296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	86.55
3tau_A		208	Guanylate kinase, GMP kinase; structural genomics,	86.49
3a4m_A		260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	86.3
3kl4_A		433	SRP54, signal recognition 54 kDa protein; signal r	85.94
1xjc_A		169	MOBB protein homolog; structural genomics, midwest	85.77
3hjn_A		197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	85.5
1ls1_A		295	Signal recognition particle protein; FFH, SRP54, S	85.03
3a00_A		186	Guanylate kinase, GMP kinase; domain movement, dim	85.01
2c95_A		196	Adenylate kinase 1; transferase, AP4A, nucleotide	85.01
3cm0_A		186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	84.88
3vaa_A		199	Shikimate kinase, SK; structural genomics, center	84.77
3trf_A		185	Shikimate kinase, SK; amino acid biosynthesis, tra	84.57
1yrb_A		262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	84.56
1tev_A		196	UMP-CMP kinase; ploop, NMP binding region, LID reg	84.54
1nks_A		194	Adenylate kinase; thermophilic, transferase; HET:	84.41
2b8t_A		223	Thymidine kinase; deoxyribonucleoside kinase, zinc	84.15
1gtv_A		214	TMK, thymidylate kinase; transferase, transferase	84.14
1knq_A		175	Gluconate kinase; ALFA/beta structure, transferase	83.65
2ffh_A		425	Protein (FFH); SRP54, signal recognition particle,	83.57
1of1_A		376	Thymidine kinase; transferase, antiviral drug, enz	83.22
3kb2_A		173	SPBC2 prophage-derived uncharacterized protein YOR	83.22
1j8m_F		297	SRP54, signal recognition 54 kDa protein; signalin	83.0
1m7g_A		211	Adenylylsulfate kinase; APS kinase, transferase, s	82.87
2j41_A		207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	82.79
1e6c_A		173	Shikimate kinase; phosphoryl transfer, ADP, shikim	82.52
1y63_A		184	LMAJ004144AAA protein; structural genomics, protei	82.22
4eun_A		200	Thermoresistant glucokinase; putative sugar kinase	82.12
3uie_A		200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	82.09
1e2k_A		331	Thymidine kinase; transferase, antiviral drug, enz	82.09
2cdn_A		201	Adenylate kinase; phosphoryl transfer, associative	81.78
1a7j_A		290	Phosphoribulokinase; transferase, calvin cycle; 2.	81.72
3lnc_A		231	Guanylate kinase, GMP kinase; ALS collaborative cr	81.34
1ihu_A		589	Arsenical pump-driving ATPase; aluminum fluoride,	81.18
2v3c_C		432	SRP54, signal recognition 54 kDa protein; nucleoti	81.08
3t61_A		202	Gluconokinase; PSI-biology, structural genomics, p	81.03
1qf9_A		194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	80.82
3iij_A		180	Coilin-interacting nuclear ATPase protein; alpha a	80.62
2bwj_A		199	Adenylate kinase 5; phosphoryl transfer reaction,	80.56
1xx6_A		191	Thymidine kinase; NESG, northeast structural genom	80.45

>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0	Back alignment and structure

Probab=100.00  E-value=1.9e-168  Score=1270.55  Aligned_cols=307  Identities=50%  Similarity=0.827  Sum_probs=304.3

Q ss_pred             CCCHHHHHHHcCCCCcchhcccCceeeecchhhhhhcCCCCCcEEEEeccCCCCCCCCCCCcCcCCCccchhHHHHHHHH
Q 044054           28 PLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGEITRTPLGEGEITQYPLGEGKSTTTVGLCQAL  107 (400)
Q Consensus        28 ~~pI~eiA~~lGL~~dele~YG~yKAKv~l~~l~~~~~~~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTTttiGL~~aL  107 (400)
                      ++||.+||+++||++||+||||+|||||+++++++++++++|||||||||||||+          |||||||||||+|||
T Consensus         2 ~~pI~~iA~~lgi~~~~le~YG~~kAKv~~~~l~~~~~~~~GklIlVTaItPTPa----------GEGKtTttiGL~~aL   71 (543)
T 3do6_A            2 MKPIKEIADQLELKDDILYPYGHYIAKIDHRFLKSLENHEDGKLILVTAVTPTPA----------GEGKTTTSIGLSMSL   71 (543)
T ss_dssp             CCCHHHHHHHTTCCGGGEEEETTTEEEECTTHHHHTTTSCCCEEEEEEESSCCTT----------CCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHcCCCHHHHHhCCCccEEecHHHhhhhhcCCCCeEEEEEecCCCCC----------CCCccchHHHHHHHH
Confidence            6899999999999999999999999999999999999899999999999999999          999999999999999


Q ss_pred             hhhcCCcEEEEecCCCCCCccccccCcCCCCceeeecCcccccccchhhhHHHHHHhHHHHHHHhhhhcccccChhHhhh
Q 044054          108 GAFLDKKVVTCLRQPLQGPTFGIRGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFN  187 (400)
Q Consensus       108 ~~~lgk~~~~~lRqPS~GP~FGiKGGAaGGGysQviPmeeiNLHfTGD~HAItaA~NLlaA~idn~i~~~~~~~~~~l~~  187 (400)
                      + |+||++++|||||||||||||||||||||||||+|||||||||||||||||||||||||+|||||||+|         
T Consensus        72 ~-~lgk~~~~~lRePSlGP~FGiKGGAaGGGysQViPMediNLHfTGD~HAItaAnNLLaA~iDn~i~~gn---------  141 (543)
T 3do6_A           72 N-RIGKKSIVTLREPSLGPTLGLKGGATGGGRSRVLPSDEINLHFTGDMHAVASAHNLLAAVLDSHIKHGN---------  141 (543)
T ss_dssp             H-HTTCCEEEEECCCCHHHHHHSCCSTTEETTEEEESHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHTTC---------
T ss_pred             H-hcCCeeEEEEecCCCCCcCCcccccCCCcceeecchhhccccccchHHHHHHHHHHHHHHHHHHHhccC---------
Confidence            5 999999999999999999999999999999999999999999999999999999999999999999998         


Q ss_pred             hcCCCCCcCCcchhHHHHHHHHHhcCCCCCCCCCCHHHhhhhccCCCCCCceeeecccccCcccccceeeccCCCCCCcc
Q 044054          188 RLCPPNKEGERSFSNIMFRRLRKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMV  267 (400)
Q Consensus       188 rl~p~~~~g~r~f~~~~~~rl~klgi~~~~p~~lt~ee~~~~~~L~IDp~~I~w~Rv~D~NDR~LR~I~iG~g~~~~G~~  267 (400)
                                                                 +|||||++|+|+||||||||+||+|+||+|+++||+|
T Consensus       142 -------------------------------------------~L~IDp~~I~WkRv~D~NDR~LR~IvvGlGg~~~G~~  178 (543)
T 3do6_A          142 -------------------------------------------ELKIDITRVFWKRTMDMNDRALRSIVIGLGGSANGFP  178 (543)
T ss_dssp             -------------------------------------------TTCEEEEEECCCEEESSCCGGGSSEEESCSSGGGCCC
T ss_pred             -------------------------------------------ccCCCCCeEEEEecccccCceeeeeEECCCCCCCCCc
Confidence                                                       7999999999999999999999999999999999999


Q ss_pred             eecceeeeehhHHHHHHHhcCCHHHHHHHhcCcEEeecCCCCceeccccCcchhHHHHhhhccCCCcceeecCceeEEec
Q 044054          268 RETGFDISVASEIMAVLALTTSLADTRERVGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHA  347 (400)
Q Consensus       268 re~gFdItvASEiMAIL~La~dl~Dlr~Rlg~ivva~~~~g~PVta~DL~~~GAmt~LLkdAikPnLvQTlEgtP~~VH~  347 (400)
                      ||+|||||||||||||||||+|++|||+|||||||||++||+||||+||+++||||+||||||||||||||||||+||||
T Consensus       179 re~gFdITvASEiMAILcLa~dl~DLk~Rlg~ivvay~~~g~PVta~DL~~~GAmt~LLkDAikPNLvQTlEgtPa~VHg  258 (543)
T 3do6_A          179 REDSFIITAASEVMAILALSENMKDLKERLGKIIVALDADRKIVRISDLGIQGAMAVLLKDAINPNLVQTTEGTPALIHC  258 (543)
T ss_dssp             EEECEEEGGGSHHHHHHHHCSSHHHHHHHHHTCEEEEETTSCEEEHHHHTCHHHHHHHTTTTTSCEEEEETTSCEEEECC
T ss_pred             cccceeEEehhhhhhHHHhcCCHHHHHHHhcCEEEEEcCCCCeEehHhcccchhHHHHHHhhcCccceeeccCCeeEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchhcccCchHHHHHHHHHhcCCCCeEEeecccccCcccccccccccccCC
Q 044054          348 GPFANIAHGNSSIVADKIALKLVGPGGIVVTEAGFGADIGAEKFMNIKCRYSG  400 (400)
Q Consensus       348 GPFANIAhG~nSiiA~~~aLklag~~dyvVTEAGFGaDlG~EKF~nIkcr~sg  400 (400)
                      ||||||||||||||||++||||+   ||||||||||||||||||||||||++|
T Consensus       259 GPFANIAHGcnSviAtk~ALkla---DyvVTEAGFGADlGaEKF~dIKCR~~g  308 (543)
T 3do6_A          259 GPFANIAHGTNSIIATKMAMKLS---EYTVTEAGFGADLGAEKFIDFVSRVGG  308 (543)
T ss_dssp             CCCSSSSCCBCCHHHHHHHHHHC---SEEEEEBSSSTTTHHHHHHHTHHHHHT
T ss_pred             CccccccccchHHHHHHHHHhcc---CeEEEecccccccchHhhcCccccccC
Confidence            99999999999999999999999   999999999999999999999999986

PyMOL of 3do6

>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}	Back alignment and structure

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}	Back alignment and structure

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*	Back alignment and structure

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}	Back alignment and structure

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*	Back alignment and structure

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*	Back alignment and structure

>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}	Back alignment and structure

>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A	Back alignment and structure

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10	Back alignment and structure

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}	Back alignment and structure

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A	Back alignment and structure

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*	Back alignment and structure

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*	Back alignment and structure

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*	Back alignment and structure

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*	Back alignment and structure

>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*	Back alignment and structure

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*	Back alignment and structure

>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}	Back alignment and structure

>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}	Back alignment and structure

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*	Back alignment and structure

>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}	Back alignment and structure

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*	Back alignment and structure

>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}	Back alignment and structure

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*	Back alignment and structure

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}	Back alignment and structure

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*	Back alignment and structure

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}	Back alignment and structure

>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A	Back alignment and structure

>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A	Back alignment and structure

>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*	Back alignment and structure

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*	Back alignment and structure

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}	Back alignment and structure

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*	Back alignment and structure

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}	Back alignment and structure

>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}	Back alignment and structure

>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A	Back alignment and structure

>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A	Back alignment and structure

>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*	Back alignment and structure

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}	Back alignment and structure

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10	Back alignment and structure

>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}	Back alignment and structure

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}	Back alignment and structure

>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A	Back alignment and structure

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}	Back alignment and structure

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*	Back alignment and structure

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}	Back alignment and structure

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9	Back alignment and structure

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A	Back alignment and structure

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*	Back alignment and structure

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A	Back alignment and structure

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*	Back alignment and structure

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1	Back alignment and structure

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*	Back alignment and structure

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}	Back alignment and structure

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}	Back alignment and structure

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A	Back alignment and structure

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}	Back alignment and structure

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10	Back alignment and structure

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}	Back alignment and structure

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*	Back alignment and structure

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}	Back alignment and structure

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*	Back alignment and structure

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*	Back alignment and structure

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}	Back alignment and structure

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*	Back alignment and structure

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A	Back alignment and structure

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10	Back alignment and structure

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}	Back alignment and structure

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*	Back alignment and structure

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A	Back alignment and structure

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}	Back alignment and structure

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}	Back alignment and structure

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}	Back alignment and structure

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*	Back alignment and structure

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1	Back alignment and structure

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1	Back alignment and structure

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*	Back alignment and structure

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*	Back alignment and structure

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*	Back alignment and structure

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A	Back alignment and structure

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1	Back alignment and structure

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*	Back alignment and structure

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F	Back alignment and structure

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*	Back alignment and structure

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}	Back alignment and structure

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*	Back alignment and structure

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1	Back alignment and structure

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}	Back alignment and structure

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*	Back alignment and structure

>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...	Back alignment and structure

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A	Back alignment and structure

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6	Back alignment and structure

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}	Back alignment and structure

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*	Back alignment and structure

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B	Back alignment and structure

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}	Back alignment and structure

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*	Back alignment and structure

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A	Back alignment and structure

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}	Back alignment and structure

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		400
d1eg7a_		549	c.37.1.10 (A:) Formyltetrahydrofolate synthetase {	1e-140

>d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella thermoacetica [TaxId: 1525]} Length = 549	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Formyltetrahydrofolate synthetase
species: Moorella thermoacetica [TaxId: 1525]

 Score =  409 bits (1054), Expect = e-140
 Identities = 178/382 (46%), Positives = 232/382 (60%), Gaps = 66/382 (17%)

Query: 19  DIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGEIT 78
           DI+IA + +   + E+A+ L ++ +  +LYGKYKAK+ L V   L+   DG  ++V  IT
Sbjct: 1   DIEIAQAAKMKPVMELARGLGIQEDEVELYGKYKAKISLDVYRRLKDKPDGKLILVTAIT 60

Query: 79  RTPLGEGEITQYPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPLQGPTFGIRGGAAGGG 138
            TP GEG          K+TT+VGL  AL   L K+V+ CLR+P  GP+FGI+GGAAGGG
Sbjct: 61  PTPAGEG----------KTTTSVGLTDALAR-LGKRVMVCLREPSLGPSFGIKGGAAGGG 109

Query: 139 YSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLCPPNKEGER 198
           Y+QV+PM++ NLH TGDIHA+T A+NLLAA +D  +                        
Sbjct: 110 YAQVVPMEDINLHFTGDIHAVTYAHNLLAAMVDNHLQQGN-------------------- 149

Query: 199 SFSNIMFRRLRKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIG 258
                                            L+IDP +ITWRRV+D+N+R LR I IG
Sbjct: 150 --------------------------------VLNIDPRTITWRRVIDLNERALRNIVIG 177

Query: 259 QGPEEKGMVRETGFDISVASEIMAVLALTTSLADTRERVGKMVIGNSKAGDPITADDLGV 318
            G +  G+ RETGFDISVASE+MA L L + L D +ER  + V+G +  G P+TA DL  
Sbjct: 178 LGGKANGVPRETGFDISVASEVMACLCLASDLMDLKERFSRKVVGYTYDGKPVTAGDLEA 237

Query: 319 GGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGIVVT 378
            G++ +LMKDAI P L+QTLE TP  +H GPFANIAHG +SI+A K ALKL      VVT
Sbjct: 238 QGSMALLMKDAIKPNLVQTLENTPAFIHGGPFANIAHGCNSIIATKTALKL---ADYVVT 294

Query: 379 EAGFGADIGAEKFMNIKCRYSG 400
           EAGFGAD+GAEKF ++KCRY+G
Sbjct: 295 EAGFGADLGAEKFYDVKCRYAG 316

PyMOL of d1eg7a_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		400
d1eg7a_		549	Formyltetrahydrofolate synthetase {Moorella thermo	100.0
d1byia_		224	Dethiobiotin synthetase {Escherichia coli [TaxId:	97.13
d1g3qa_		237	Cell division regulator MinD {Archaeon Pyrococcus	96.98
d1ihua1		296	Arsenite-translocating ATPase ArsA {Escherichia co	96.63
d1hyqa_		232	Cell division regulator MinD {Archaeon Archaeoglob	96.62
d4tmka_		210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.38
d1ihua2		279	Arsenite-translocating ATPase ArsA {Escherichia co	96.08
d1nn5a_		209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.18
d1m8pa3		183	ATP sulfurylase C-terminal domain {Fungus (Penicil	94.95
d2afhe1		289	Nitrogenase iron protein {Azotobacter vinelandii [	94.36
d1cp2a_		269	Nitrogenase iron protein {Clostridium pasteurianum	93.99
d2i3ba1		189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	93.5
d1gsia_		208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	93.31
d1kaga_		169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	92.94
d1khta_		190	Adenylate kinase {Archaeon Methanococcus voltae [T	92.88
d1tmka_		214	Thymidylate kinase {Baker's yeast (Saccharomyces c	92.87
d1rz3a_		198	Hypothetical protein rbstp0775 {Bacillus stearothe	92.69
d1nksa_		194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	92.68
d1knqa_		171	Gluconate kinase {Escherichia coli [TaxId: 562]}	92.47
d1qhxa_		178	Chloramphenicol phosphotransferase {Streptomyces v	92.32
d1zp6a1		176	Hypothetical protein Atu3015 {Agrobacterium tumefa	91.66
d1lw7a2		192	Transcriptional regulator NadR, ribosylnicotinamid	91.65
d1y63a_		174	Probable kinase LmjF30.1890 {Leishmania major [Tax	91.41
d2bdta1		176	Hypothetical protein BH3686 {Bacillus halodurans [	91.28
d1p9ra_		401	Extracellular secretion NTPase EpsE {Vibrio choler	90.24
d1htwa_		158	Hypothetical protein HI0065 {Haemophilus influenza	89.49
d1xjca_		165	Molybdopterin-guanine dinucleotide biosynthesis pr	89.12
d1x6va3		195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	88.36
d1m7ga_		208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	87.41
d1okkd2		207	GTPase domain of the signal recognition particle r	87.28
d1rkba_		173	Adenylate kinase {Human (Homo sapiens), isoenzyme	87.18
d1ly1a_		152	Polynucleotide kinase, kinase domain {Bacteriophag	86.89
d1bifa1		213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	86.5
d1e6ca_		170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	84.45
d1np6a_		170	Molybdopterin-guanine dinucleotide biosynthesis pr	82.82
d1znwa1		182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	82.75
d2vp4a1		197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	82.43
d1ls1a2		207	GTPase domain of the signal sequence recognition p	82.04
d1p5zb_		241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	81.41

>d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella thermoacetica [TaxId: 1525]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Formyltetrahydrofolate synthetase
species: Moorella thermoacetica [TaxId: 1525]

Probab=100.00  E-value=2.4e-168  Score=1275.38  Aligned_cols=316  Identities=57%  Similarity=0.947  Sum_probs=313.6

Q ss_pred             cHHHHccCCCCCHHHHHHHcCCCCcchhcccCceeeecchhhhhhcCCCCCcEEEEeccCCCCCCCCCCCcCcCCCccch
Q 044054           19 DIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGEITRTPLGEGEITQYPLGEGKST   98 (400)
Q Consensus        19 DieIa~~~~~~pI~eiA~~lGL~~dele~YG~yKAKv~l~~l~~~~~~~~Gk~VlVTaItPTP~~~~~~~~~~~GEGKTT   98 (400)
                      ||||||+++++||++||+++||++|||||||+|||||+++++++++++|+|||||||||||||+          ||||||
T Consensus         1 D~eIa~~~~~~~I~~ia~~~gl~~~~~~~yG~~kaKv~~~~~~~~~~~~~gklilVTaitPTp~----------GEGKtT   70 (549)
T d1eg7a_           1 DIEIAQAAKMKPVMELARGLGIQEDEVELYGKYKAKISLDVYRRLKDKPDGKLILVTAITPTPA----------GEGKTT   70 (549)
T ss_dssp             CCSTTCCCCCCCHHHHHHTTTCCGGGEEESSSSCEEECTHHHHHHTTSCCCEEEEEEESSCCTT----------CCCHHH
T ss_pred             ChhhHhhCCCCCHHHHHHHcCCCHHHHhhcCCcceEecHHHHHhhccCCCceEEEEEeCCCCCC----------CCCcce
Confidence            8999999999999999999999999999999999999999999999999999999999999999          999999


Q ss_pred             hHHHHHHHHhhhcCCcEEEEecCCCCCCccccccCcCCCCceeeecCcccccccchhhhHHHHHHhHHHHHHHhhhhccc
Q 044054           99 TTVGLCQALGAFLDKKVVTCLRQPLQGPTFGIRGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEA  178 (400)
Q Consensus        99 ttiGL~~aL~~~lgk~~~~~lRqPS~GP~FGiKGGAaGGGysQviPmeeiNLHfTGD~HAItaA~NLlaA~idn~i~~~~  178 (400)
                      |||||+||| +++||++++|||||||||||||||||||||||||+|||||||||||||||||||||||+|+|||||||+|
T Consensus        71 ttiGL~~aL-~~lgk~~~~~lRePSlGP~fGiKGGAaGGG~sqv~Pme~inLhftGD~hAitaA~NLl~A~idn~i~~gn  149 (549)
T d1eg7a_          71 TSVGLTDAL-ARLGKRVMVCLREPSLGPSFGIKGGAAGGGYAQVVPMEDINLHFTGDIHAVTYAHNLLAAMVDNHLQQGN  149 (549)
T ss_dssp             HHHHHHHHH-HHTTCCEEEEECCCCSTHHHHTTCCCSEETTEEEECHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             eHHhHHHHH-HHhCCceEEEEecCCCCCccccccCCCCCCeeeeecchhhhcccCCcHHHHHHHHHHHHHHHHhhhcccc
Confidence            999999999 5999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccChhHhhhhcCCCCCcCCcchhHHHHHHHHHhcCCCCCCCCCCHHHhhhhccCCCCCCceeeecccccCcccccceeec
Q 044054          179 SQSDKALFNRLCPPNKEGERSFSNIMFRRLRKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIG  258 (400)
Q Consensus       179 ~~~~~~l~~rl~p~~~~g~r~f~~~~~~rl~klgi~~~~p~~lt~ee~~~~~~L~IDp~~I~w~Rv~D~NDR~LR~I~iG  258 (400)
                                                                          +|+|||++|+||||||||||+||+|+||
T Consensus       150 ----------------------------------------------------~L~iDp~~I~w~Rv~D~NDR~LR~i~vg  177 (549)
T d1eg7a_         150 ----------------------------------------------------VLNIDPRTITWRRVIDLNERALRNIVIG  177 (549)
T ss_dssp             ----------------------------------------------------TTCBCGGGCCCCEEESSCCGGGSSEEES
T ss_pred             ----------------------------------------------------cCCCCCceeeeceeecchhhhhhheEEe
Confidence                                                                6999999999999999999999999999


Q ss_pred             cCCCCCCcceecceeeeehhHHHHHHHhcCCHHHHHHHhcCcEEeecCCCCceeccccCcchhHHHHhhhccCCCcceee
Q 044054          259 QGPEEKGMVRETGFDISVASEIMAVLALTTSLADTRERVGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTL  338 (400)
Q Consensus       259 ~g~~~~G~~re~gFdItvASEiMAIL~La~dl~Dlr~Rlg~ivva~~~~g~PVta~DL~~~GAmt~LLkdAikPnLvQTl  338 (400)
                      +|++.+|++||+|||||||||||||||||+|++|||+|||||||||++||+||||+||+++||||+|||||||||||||+
T Consensus       178 lgg~~~G~~r~~gFdIT~ASEvMAIl~La~~l~DLr~Rlg~ivv~~~~~g~pv~a~DL~~~GAm~~LLkdAi~PNLvQT~  257 (549)
T d1eg7a_         178 LGGKANGVPRETGFDISVASEVMACLCLASDLMDLKERFSRKVVGYTYDGKPVTAGDLEAQGSMALLMKDAIKPNLVQTL  257 (549)
T ss_dssp             CSSTTSCCCEEECEEEGGGSHHHHHHHHCSSHHHHHHHHHTCEEEEBTTSCEEETGGGTCHHHHHHHTTTTTSCEEEEET
T ss_pred             ccccCCCcceecccccchhhhheeeeeecCCHHHHHHhhcCEEeeecCCCCCcchhhcccchhHHHHHHHHHHhhhheec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCceeEEeccccchhcccCchHHHHHHHHHhcCCCCeEEeecccccCcccccccccccccCC
Q 044054          339 EGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGIVVTEAGFGADIGAEKFMNIKCRYSG  400 (400)
Q Consensus       339 EgtP~~VH~GPFANIAhG~nSiiA~~~aLklag~~dyvVTEAGFGaDlG~EKF~nIkcr~sg  400 (400)
                      ||||+||||||||||||||||||||++||+|+   ||||||||||||||||||||||||++|
T Consensus       258 EgtPa~vHgGPFANIAhG~nSviAt~~al~la---dyvVTEAGFGaDlGaEKF~dIkcr~~g  316 (549)
T d1eg7a_         258 ENTPAFIHGGPFANIAHGCNSIIATKTALKLA---DYVVTEAGFGADLGAEKFYDVKCRYAG  316 (549)
T ss_dssp             TCCEEEECCCCCSSSSCCBCCHHHHHHHHHHC---SEEEEEBSSCTTTHHHHHHHTHHHHHT
T ss_pred             cCCceeeecCCccccccccchHHHHHHHhhcC---CeEEEeccccCCccchhhhccccccCC
Confidence            99999999999999999999999999999999   999999999999999999999999876

PyMOL of d1eg7a_

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}	Back information, alignment and structure

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}	Back information, alignment and structure

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}	Back information, alignment and structure

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}	Back information, alignment and structure

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}	Back information, alignment and structure

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}	Back information, alignment and structure

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}	Back information, alignment and structure

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}	Back information, alignment and structure

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}	Back information, alignment and structure

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}	Back information, alignment and structure

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}	Back information, alignment and structure

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}	Back information, alignment and structure

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}	Back information, alignment and structure

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}	Back information, alignment and structure

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}	Back information, alignment and structure

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}	Back information, alignment and structure

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure