Citrus Sinensis ID: 044065

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-
Protein Sequence
MAQSQTKVFSFIILAVLLLTIINCNEVSASKCCRNHPQLGNCVKGKDDQPNTGKCWKYCTTECKGCICKPVKSEHHCHCMC
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHcccccEEEcccccccEEEcc
Secondary Structure Prediction (SSPRO)
cccHcccHHHHHHHHHHHHHHHccccEEccHccccccccccccccccccccccccHHHEHHcccccEEEccccccEEEccc
Coil and Loop (DISEMBL)
MAQSQTKVFSFIILAVLLLTIINCnevsaskccrnhpqlgncvkgkddqpntgkcwkyctteckgcickpvksehhchcmc
Flexible Loop (DISEMBL)
MAQSQTKVFSFIILAVLLLTIINCNEVSASKCCRNHPQLgncvkgkddqpntGKCWKYCTTECKGCickpvksehhchcmc
Low Complexity Region (SEG)
MAQSQTKVFSFIILAVLLLTIINCNEVSASKCCRNHPQLGNCVKGKDDQPNTGKCWKYCTTECKGCICKPVKSEHHCHCMC
Disordered region (IsUnstruct)
******KVFSFIILAVLLLTIINCNEVSASKCCRNHPQLGNCVKGKDDQPNTGKCWKYCTTECKGCICKPVKSEHHCHC**
Disordered Region (DISOPRED)
**********FIILAVLLLTIINCNEVSASKCCRNHPQLGNCVKGKDDQPNTGKCWKYCTTECKGCICKPVKSEHHCHCMC
Disordered Region (DISEMBL)
MAQSQTKVFSFIILAVLLLTIINCNEVSASKCCRNHPQLGNCVKGKDDQPNTGKCWKYCTTECKGCICKPV**********
Disordered Region (DISPRO)
*****TKVFSFIILAVLLLTIINCNEVSASKCCRNHPQLGNCVKGKDDQPNTGKCWKYCTTECKGCICKPVKSEHHCHCMC
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAQSQTKVFSFIILAVLLLTIINCNEVSASKCCRNHPQLGNCVKGKDDQPNTGKCWKYCTTECKGCICKPVKSEHHCHCMC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	81	2.2.26 [Sep-21-2011]
Q2V2S1	90	Putative defensin-like pr	yes	no	0.950	0.855	0.383	2e-08
Q2V391	82	Defensin-like protein 22	no	no	0.876	0.865	0.378	2e-06
P0CAX9	94	Defensin-like protein 21	no	no	0.950	0.819	0.366	2e-06
Q2V392	81	Putative defensin-like pr	no	no	0.901	0.901	0.352	0.0001
Q2V4J2	81	Putative defensin-like pr	no	no	0.913	0.913	0.333	0.0005

>sp|Q2V2S1|DEF20_ARATH Putative defensin-like protein 20 OS=Arabidopsis thaliana GN=At5g52605 PE=3 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 9/86 (10%)

Query: 5  QTKVFSFIILAVLLLTIINCNEVSA-------SKCCRNHPQLGNCVKG-KDDQPNTGKCW 56
          +T V SF++ A ++L I+   +  A       S CC+ HP +G C+ G  DD    GKCW
Sbjct: 3  RTNVVSFVLFAAIVLCILYGQKHIAPWIFEDKSICCKEHPSVGRCLPGIDDDAEKDGKCW 62

Query: 57 KYCTTECK-GCICKPVKSEHHCHCMC 81
          K+C   C+ G  CK  + +H CHC C
Sbjct: 63 KFCIEGCETGGFCKLFEHKHICHCNC 88

Arabidopsis thaliana (taxid: 3702)

>sp|Q2V391|DEF22_ARATH Defensin-like protein 22 OS=Arabidopsis thaliana GN=At5g08315 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 40/82 (48%), Gaps = 11/82 (13%)

Query: 7  KVFSFIILAVLLLTIINCN----EVSASKCCRNHPQLGNCVKGKDDQPNTGKCWKYCTTE 62
          KVFSF +L +L  ++I+      E   S CC NHP+ G C    DDQ    +C  +C   
Sbjct: 5  KVFSFALLLILTFSLIDVEGYNVENGGSLCCNNHPKFGKCNTKNDDQ----RCNSWCLNG 60

Query: 63 C---KGCICKPVKSEHHCHCMC 81
          C   KG  CK +     CHC C
Sbjct: 61 CDNGKGGYCKSMSHGGQCHCYC 82

Arabidopsis thaliana (taxid: 3702)

>sp|P0CAX9|DEF21_ARATH Defensin-like protein 21 OS=Arabidopsis thaliana GN=At4g14276 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 13/90 (14%)

Query: 5  QTKVFSFIILAVLLLTI----INCNEVSA-------SKCCRNHPQLGNCVKGKDDQPN-T 52
          +T V SF++ A ++L I    I+  + +A       S CC+ HP +G C+   DD     
Sbjct: 3  RTNVVSFVLFAAIVLCIGSIQIDGQKHTAPWIPEDNSICCKEHPSVGRCLPNIDDSAEKG 62

Query: 53 GKCWKYCTTECK-GCICKPVKSEHHCHCMC 81
          GKCWK+C   C+ G  CK    +H CHC C
Sbjct: 63 GKCWKFCIEGCETGGFCKLFGHKHICHCNC 92

Arabidopsis thaliana (taxid: 3702)

>sp|Q2V392|DEF25_ARATH Putative defensin-like protein 25 OS=Arabidopsis thaliana GN=At5g08055 PE=3 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 12/85 (14%)

Query: 4  SQTKVFSFIILAVLLLTI----INCNEVSASKCCRNHPQLGNCVKGKDDQPNTGKCWKYC 59
          +  KVFSF ++ VL  ++     N  E   S CC NHP+ G C    D+Q    +C ++C
Sbjct: 2  ASLKVFSFALILVLTFSVDVEGYNV-ESGGSLCCNNHPKFGKCNTNNDNQ----RCNRWC 56

Query: 60 TTEC---KGCICKPVKSEHHCHCMC 81
             C   KG  CK +     CHC C
Sbjct: 57 HNGCGNGKGDYCKAMSHGGLCHCYC 81

Arabidopsis thaliana (taxid: 3702)

>sp|Q2V4J2|DEF26_ARATH Putative defensin-like protein 26 OS=Arabidopsis thaliana GN=At1g33607 PE=5 SV=1

 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 10/84 (11%)

Query: 4  SQTKVFSFIILAVLLLTIINC---NEVSASKCCRNHPQLGNCVKGKDDQPNTGKCWKYCT 60
          +  KVFSF +L VL  ++I      E   S CC +HP+ G C    D+Q    +C ++C 
Sbjct: 2  ASLKVFSFALLIVLTFSVIGMIYNVESGGSLCCNSHPKFGKCNTNNDEQ----RCNRWCH 57

Query: 61 TEC---KGCICKPVKSEHHCHCMC 81
            C   KG   K +     CH  C
Sbjct: 58 NGCGNGKGGYYKSMSHGGQCHYYC 81

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	81
359496080	84	PREDICTED: defensin-like protein 21-like	0.962	0.928	0.445	2e-12
359496836	84	PREDICTED: defensin-like protein 21-like	0.975	0.940	0.453	4e-12
224139290	84	predicted protein [Populus trichocarpa]	0.962	0.928	0.463	1e-10
224135519	85	predicted protein [Populus trichocarpa]	0.962	0.917	0.445	4e-10
297804884	92	hypothetical protein ARALYDRAFT_915457 [	0.938	0.826	0.395	5e-08
255561484	86	conserved hypothetical protein [Ricinus	0.913	0.860	0.337	9e-07
79330712	90	putative defensin-like protein 20 [Arabi	0.950	0.855	0.383	9e-07
255561498	86	conserved hypothetical protein [Ricinus	0.913	0.860	0.325	9e-06
255561504	86	conserved hypothetical protein [Ricinus	0.913	0.860	0.314	1e-05
255561502	86	conserved hypothetical protein [Ricinus	0.913	0.860	0.325	1e-05

>gi|359496080|ref|XP_003635147.1| PREDICTED: defensin-like protein 21-like [Vitis vinifera]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 54/83 (65%), Gaps = 5/83 (6%)

Query: 4  SQTKVFSFIILAVLLLTIINCNEVSA---SKCCRNHPQLGNCVKGKDDQPNTGKCWKYCT 60
          ++++ F    LA++++  + C EV +    +CC++HP+LG+C  GKDD PN GKCW YC 
Sbjct: 2  AKSRSFESFFLAMVVILSLVCKEVVSQQDGRCCKDHPKLGHCAPGKDDDPNGGKCWTYCI 61

Query: 61 TEC-KGCICKPVKSEHH-CHCMC 81
          TEC KG +CK +    H CHC C
Sbjct: 62 TECSKGGLCKKLSGGRHVCHCYC 84

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496836|ref|XP_003635352.1| PREDICTED: defensin-like protein 21-like [Vitis vinifera]

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 56/86 (65%), Gaps = 7/86 (8%)

Query: 1  MAQSQTKVFSFIILAVLLLTIINCNEVSA---SKCCRNHPQLGNCVKGKDDQPNTGKCWK 57
          MA+S++  F    LA++++  + C EV +    +CC++HP+LG+C  GKDD PN GKCW 
Sbjct: 1  MAKSRS--FGSFFLAMVVILSLVCKEVVSQQDGRCCKDHPKLGHCAPGKDDDPNGGKCWT 58

Query: 58 YCTTEC-KGCICKPVKSEHH-CHCMC 81
          YC T+C KG +CK +    H CHC C
Sbjct: 59 YCITKCSKGGLCKKLSGGRHVCHCYC 84

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139290|ref|XP_002323039.1| predicted protein [Populus trichocarpa] gi|222867669|gb|EEF04800.1| predicted protein [Populus trichocarpa]

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 49/82 (59%), Gaps = 4/82 (4%)

Query: 4  SQTKVFSFIILAVLLLTIINCNEVSA-SKCCRNHPQLGNCVKGKDDQPNTGKCWKYCTTE 62
          S+  +  F+++AVLLL     N V+A S+CC  HP+LG C  G DD+   GKCW+YC   
Sbjct: 3  SKKVIIPFVLIAVLLLCQDYKNNVAAQSQCCTEHPELGKCQPGVDDKSPNGKCWQYCMNN 62

Query: 63 C---KGCICKPVKSEHHCHCMC 81
          C   KG  CK   + HHCHC C
Sbjct: 63 CDENKGGFCKLNNNMHHCHCYC 84

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135519|ref|XP_002327238.1| predicted protein [Populus trichocarpa] gi|222835608|gb|EEE74043.1| predicted protein [Populus trichocarpa]

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 48/83 (57%), Gaps = 5/83 (6%)

Query: 4  SQTKVFSFIILAVLLLTIINCNEVSA--SKCCRNHPQLGNCVKGKDDQPNTGKCWKYCTT 61
          S+  +  F+++AVLLL     N + A  S+CC  HP+LG C  G DD+   GKCW+YC  
Sbjct: 3  SKKVIIPFVLIAVLLLCQDYKNNIVAAQSQCCTEHPELGKCQPGVDDKSPDGKCWQYCMN 62

Query: 62 EC---KGCICKPVKSEHHCHCMC 81
           C   KG  CK    +HHCHC C
Sbjct: 63 NCDENKGGFCKLNNKKHHCHCYC 85

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804884|ref|XP_002870326.1| hypothetical protein ARALYDRAFT_915457 [Arabidopsis lyrata subsp. lyrata] gi|297316162|gb|EFH46585.1| hypothetical protein ARALYDRAFT_915457 [Arabidopsis lyrata subsp. lyrata]

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 15/91 (16%)

Query: 5  QTKVFSFIILAVLLLTIINCNEVSASK------------CCRNHPQLGNCVKGKDDQP-N 51
          +TKV S ++ A ++L I   N++   K            CCR HP LG C+   DD+  N
Sbjct: 3  RTKVVSLVLFAAIVLCI-GSNQIDGQKHIAPWIYENKSICCREHPSLGRCLPNIDDKAEN 61

Query: 52 TGKCWKYCTTEC-KGCICKPVKSEHHCHCMC 81
           GKCWK+C  EC +G  CK   ++H CHC C
Sbjct: 62 DGKCWKFCVEECERGGYCKLFGNKHICHCYC 92

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561484|ref|XP_002521752.1| conserved hypothetical protein [Ricinus communis] gi|223538965|gb|EEF40562.1| conserved hypothetical protein [Ricinus communis]

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 15/89 (16%)

Query: 4  SQTKVFSFIILAVLLLTIINCNEVSASK-----------CCRNHPQLGNCVKGKDDQPNT 52
          +Q +VF   +L  L+L +     V+  +           CCR H + G C+ G+DD    
Sbjct: 2  AQVRVFYIALLLALMLCVDYNMNVAVGRVEPPLPQADGICCREHSEFGRCIPGQDDH--- 58

Query: 53 GKCWKYCTTECKGCICKPVKSEHHCHCMC 81
           KC  +C++ CKG  CK + S+H CHC C
Sbjct: 59 -KCNDFCSSSCKGGFCKLLGSQHQCHCYC 86

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79330712|ref|NP_001032063.1| putative defensin-like protein 20 [Arabidopsis thaliana] gi|122209147|sp|Q2V2S1.1|DEF20_ARATH RecName: Full=Putative defensin-like protein 20; Flags: Precursor gi|332008857|gb|AED96240.1| putative defensin-like protein 20 [Arabidopsis thaliana]

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 9/86 (10%)

Query: 5  QTKVFSFIILAVLLLTIINCNEVSA-------SKCCRNHPQLGNCVKG-KDDQPNTGKCW 56
          +T V SF++ A ++L I+   +  A       S CC+ HP +G C+ G  DD    GKCW
Sbjct: 3  RTNVVSFVLFAAIVLCILYGQKHIAPWIFEDKSICCKEHPSVGRCLPGIDDDAEKDGKCW 62

Query: 57 KYCTTECK-GCICKPVKSEHHCHCMC 81
          K+C   C+ G  CK  + +H CHC C
Sbjct: 63 KFCIEGCETGGFCKLFEHKHICHCNC 88

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561498|ref|XP_002521759.1| conserved hypothetical protein [Ricinus communis] gi|223538972|gb|EEF40569.1| conserved hypothetical protein [Ricinus communis]

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 15/89 (16%)

Query: 4  SQTKVFSFIILAVLLL-------TIINCNEVSASK----CCRNHPQLGNCVKGKDDQPNT 52
          +Q K+FS +++  L+L         +   E+  S+    CCR H + G C+ G DD    
Sbjct: 2  AQMKLFSIVLVVALVLCAEYNMNVAVGRVELPVSQADGMCCREHYEFGRCLPGHDDH--- 58

Query: 53 GKCWKYCTTECKGCICKPVKSEHHCHCMC 81
           +C ++C++ C+G  CK    +HHCHC C
Sbjct: 59 -RCNEFCSSNCRGGFCKLSGKKHHCHCYC 86

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561504|ref|XP_002521762.1| conserved hypothetical protein [Ricinus communis] gi|223538975|gb|EEF40572.1| conserved hypothetical protein [Ricinus communis]

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 15/89 (16%)

Query: 4  SQTKVFSFIILAVLLL-------TIINCNEVSASK----CCRNHPQLGNCVKGKDDQPNT 52
          +Q ++FS +++  L+L         +   E+  S+    CCR H + G C+ G DD    
Sbjct: 2  AQMRLFSIVLVVALVLCAEYNMNVAVGRVELPVSQADGMCCREHYEFGRCLPGHDDH--- 58

Query: 53 GKCWKYCTTECKGCICKPVKSEHHCHCMC 81
           +C ++C+++C+G  CK    +HHCHC C
Sbjct: 59 -RCNEFCSSKCRGGFCKLSGKKHHCHCYC 86

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561502|ref|XP_002521761.1| conserved hypothetical protein [Ricinus communis] gi|223538974|gb|EEF40571.1| conserved hypothetical protein [Ricinus communis]

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 15/89 (16%)

Query: 4  SQTKVFSFIILAVLLL-------TIINCNEVSASK----CCRNHPQLGNCVKGKDDQPNT 52
          +Q K+FS +++  L+L         +   E+  S+    CCR H + G C+ G DD    
Sbjct: 2  AQMKLFSILLVVALVLCAEYNMNVAVGRVELPVSQADGMCCREHYEFGRCLPGHDDH--- 58

Query: 53 GKCWKYCTTECKGCICKPVKSEHHCHCMC 81
           +C ++C++ C+G  CK    +HHCHC C
Sbjct: 59 -RCNEFCSSNCRGGFCKLSGKKHHCHCYC 86

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	81
TAIR|locus:1009023487	90	AT5G52605 [Arabidopsis thalian	0.950	0.855	0.383	1.2e-12
TAIR|locus:1009023341	94	AT4G14276 [Arabidopsis thalian	0.950	0.819	0.366	7.4e-11
TAIR|locus:1009023410	82	AT5G08315 [Arabidopsis thalian	0.876	0.865	0.378	5.2e-10
TAIR|locus:1009023481	81	AT5G08055 [Arabidopsis thalian	0.876	0.876	0.370	9.7e-09
TAIR|locus:1009023068	81	AT1G33607 [Arabidopsis thalian	0.876	0.876	0.358	2.3e-07
TAIR|locus:1009023494	80	AT5G19315 [Arabidopsis thalian	0.876	0.887	0.341	2.6e-06
TAIR|locus:1009023477	88	AT5G16453 [Arabidopsis thalian	0.975	0.897	0.310	1.5e-05
TAIR|locus:1009023316	74	AT4G18823 [Arabidopsis thalian	0.740	0.810	0.341	6.3e-05
TAIR|locus:4010714031	61	AT5G39645 [Arabidopsis thalian	0.567	0.754	0.403	8.1e-05
TAIR|locus:1009023462	84	LCR12 "low-molecular-weight cy	0.814	0.785	0.325	0.00093

TAIR|locus:1009023487 AT5G52605 [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 33/86 (38%), Positives = 47/86 (54%)

Query:     5 QTKVFSFIILAVLLLTIINCNEVSA-------SKCCRNHPQLGNCVKG-KDDQPNTGKCW 56
             +T V SF++ A ++L I+   +  A       S CC+ HP +G C+ G  DD    GKCW
Sbjct:     3 RTNVVSFVLFAAIVLCILYGQKHIAPWIFEDKSICCKEHPSVGRCLPGIDDDAEKDGKCW 62

Query:    57 KYCTTECK-GCICKPVKSEHHCHCMC 81
             K+C   C+ G  CK  + +H CHC C
Sbjct:    63 KFCIEGCETGGFCKLFEHKHICHCNC 88

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:1009023341 AT4G14276 [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 33/90 (36%), Positives = 47/90 (52%)

Query:     5 QTKVFSFIILAVLLLTI----INCNEVSA-------SKCCRNHPQLGNCVKGKDDQPNTG 53
             +T V SF++ A ++L I    I+  + +A       S CC+ HP +G C+   DD    G
Sbjct:     3 RTNVVSFVLFAAIVLCIGSIQIDGQKHTAPWIPEDNSICCKEHPSVGRCLPNIDDSAEKG 62

Query:    54 -KCWKYCTTECK-GCICKPVKSEHHCHCMC 81
              KCWK+C   C+ G  CK    +H CHC C
Sbjct:    63 GKCWKFCIEGCETGGFCKLFGHKHICHCNC 92

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:1009023410 AT5G08315 [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 31/82 (37%), Positives = 40/82 (48%)

Query:     7 KVFSFIILAVLLLTIINCN----EVSASKCCRNHPQLGNCVKGKDDQPNTGKCWKYCTTE 62
             KVFSF +L +L  ++I+      E   S CC NHP+ G C    DDQ    +C  +C   
Sbjct:     5 KVFSFALLLILTFSLIDVEGYNVENGGSLCCNNHPKFGKCNTKNDDQ----RCNSWCLNG 60

Query:    63 C---KGCICKPVKSEHHCHCMC 81
             C   KG  CK +     CHC C
Sbjct:    61 CDNGKGGYCKSMSHGGQCHCYC 82

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:1009023481 AT5G08055 [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 30/81 (37%), Positives = 40/81 (49%)

Query:     7 KVFSFIILAVLLLTII--NCN-EVSASKCCRNHPQLGNCVKGKDDQPNTGKCWKYCTTEC 63
             KVFSF ++ VL  ++     N E   S CC NHP+ G C    D+Q    +C ++C   C
Sbjct:     5 KVFSFALILVLTFSVDVEGYNVESGGSLCCNNHPKFGKCNTNNDNQ----RCNRWCHNGC 60

Query:    64 ---KGCICKPVKSEHHCHCMC 81
                KG  CK +     CHC C
Sbjct:    61 GNGKGDYCKAMSHGGLCHCYC 81

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:1009023068 AT1G33607 [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 29/81 (35%), Positives = 39/81 (48%)

Query:     7 KVFSFIILAVLLLTIINC--N-EVSASKCCRNHPQLGNCVKGKDDQPNTGKCWKYCTTEC 63
             KVFSF +L VL  ++I    N E   S CC +HP+ G C    D+Q    +C ++C   C
Sbjct:     5 KVFSFALLIVLTFSVIGMIYNVESGGSLCCNSHPKFGKCNTNNDEQ----RCNRWCHNGC 60

Query:    64 ---KGCICKPVKSEHHCHCMC 81
                KG   K +     CH  C
Sbjct:    61 GNGKGGYYKSMSHGGQCHYYC 81

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:1009023494 AT5G19315 [Arabidopsis thaliana (taxid:3702)]

 Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 27/79 (34%), Positives = 36/79 (45%)

Query:     7 KVFSFIILAVLLLTIINCNEVSASKCCRNHPQLGNCVKGKDDQPNTGKCWKYCTTEC--- 63
             K+ SF +L VLL +I       +S CC  H + G C   +D +    +C K+C   C   
Sbjct:     6 KIMSFAMLLVLLFSIDVVEGSGSSLCCNTHAKFGACNTYQDRK----RCNKWCLDGCDNK 61

Query:    64 KGCICKPVKS-EHHCHCMC 81
             KG  CK        CHC C
Sbjct:    62 KGGFCKRFAGGAKKCHCYC 80

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:1009023477 AT5G16453 [Arabidopsis thaliana (taxid:3702)]

 Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 27/87 (31%), Positives = 41/87 (47%)

Query:     1 MAQSQTKVFSFIILAVLLL------TIINCNEVSASKCCRNHPQLGNCVKGKDDQPNTGK 54
             MA S+  +F+ + L++LL       T+   +E+   KCC N P+ G C   +DD+     
Sbjct:     1 MASSKFVLFAILALSLLLSGTEARKTVWPSSELDP-KCCSNQPEFGICDSKEDDERCAQM 59

Query:    55 CWKYCTTECKGCICKPVKSEHHCHCMC 81
             C   C T  KG  C+P+       C C
Sbjct:    60 CLDGCPTN-KGGGCQPITEAPGAVCSC 85

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:1009023316 AT4G18823 [Arabidopsis thaliana (taxid:3702)]

 Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 27/79 (34%), Positives = 39/79 (49%)

Query:     9 FSFIILAVLLLTIINCNEVSASK----CCRNHPQLGNCVKGKDDQPNTGK-CWKYCTTEC 63
             F+F+ L+VLL  +   + +S++K    CC +HP+ G C         T K C K+C   C
Sbjct:     9 FAFLALSVLLAVMNEDSILSSNKGDSLCCNDHPEFGIC---------TNKSCNKWCLQGC 59

Query:    64 -KGCICKPVKSEHHCHCMC 81
              +G  CK       CHC C
Sbjct:    60 TRGGFCK----RKICHCYC 74

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:4010714031 AT5G39645 [Arabidopsis thaliana (taxid:3702)]

 Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
 Identities = 23/57 (40%), Positives = 32/57 (56%)

Query:     5 QTKVFSFIILAVLLLTI----INCNE-----VSASK--CCRNHPQLGNCVKGKDDQP 50
             +T V SF++ A ++L I    IN  +     +S  K  CCR HP LG C+ G DD+P
Sbjct:     3 KTNVVSFVLFAAIVLCIGSIQINGQKHIAPWISEEKSICCREHPSLGRCLPGIDDRP 59

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:1009023462 LCR12 "low-molecular-weight cysteine-rich 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
 Identities = 26/80 (32%), Positives = 40/80 (50%)

Query:     6 TKVFSFIILAVLLLTIINC-NEVSASKCCRNHPQLGN-CVKGKDDQPNTGKCWKYCTTEC 63
             TK+FS+ +L V+L +++    +  A K CR   + G  CV          KC + C  + 
Sbjct:     3 TKLFSYFMLLVVLFSVLTIIPKTEAQKRCRQELEPGKQCV--------LAKCRELCFKQL 54

Query:    64 KG---CICKPV-KSEHHCHC 79
             KG   CI KP   S++ C+C
Sbjct:    55 KGFGSCIEKPPGSSKYTCNC 74


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.135   0.485    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       81        81   0.00091  102 3  11 22  0.36    29
                                                     29  0.42    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  575 (61 KB)
  Total size of DFA:  128 KB (2080 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.74u 0.14s 8.88t   Elapsed:  00:00:01
  Total cpu time:  8.75u 0.14s 8.89t   Elapsed:  00:00:01
  Start:  Sat May 11 06:41:33 2013   End:  Sat May 11 06:41:34 2013

GO:0005576 "extracellular region" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2V2S1	DEF20_ARATH	No assigned EC number	0.3837	0.9506	0.8555	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00161248 hypothetical protein (84 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	81
pfam10101	738	pfam10101, DUF2339, Predicted membrane protein (DU	0.004

>gnl|CDD|220569 pfam10101, DUF2339, Predicted membrane protein (DUF2339)

 Score = 33.9 bits (78), Expect = 0.004
 Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 2/23 (8%)

Query: 1   MAQSQT--KVFSFIILAVLLLTI 21
           ++      ++ SFI L +LLL I
Sbjct: 707 LSGLDGLWRIVSFIGLGLLLLGI 729

This domain, found in various hypothetical bacterial proteins, has no known function. Length = 738

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	81
PF10868	90	DUF2667: Protein of unknown function (DUF2667); In	97.2

>PF10868 DUF2667: Protein of unknown function (DUF2667); InterPro: IPR022618 This family of proteins with unknown function appears to be restricted to Arabidopsis thaliana

Probab=97.20  E-value=0.00042  Score=46.94  Aligned_cols=66  Identities=30%  Similarity=0.573  Sum_probs=45.0

Q ss_pred             chhhHHHHHHHHHHHhhh--hcccCCCcccCCCCCcccCCCCCCCCCCCccchHHHhhcC---CCccceeCCC---Ccce
Q 044065            6 TKVFSFIILAVLLLTIIN--CNEVSASKCCRNHPQLGNCVKGKDDQPNTGKCWKYCTTEC---KGCICKPVKS---EHHC   77 (81)
Q Consensus         6 ~~v~sf~l~~vl~ls~~~--c~~~~~~~CC~~hp~~G~C~~~~DD~~n~~kCn~wC~~~C---kGG~CK~~~~---~h~C   77 (81)
                      +||.+|||++|+.|||+.  =.+++..+.|.  --+|.|.+.  +    ++||++|.+-.   .||+|.+.+.   ...|
T Consensus         4 lk~st~~ilvvvclsiLLisp~eV~G~~~cd--~~~G~C~~~--~----~~C~~~Ck~~~~~y~GG~C~~~~~~~~~~~C   75 (90)
T PF10868_consen    4 LKLSTFVILVVVCLSILLISPTEVDGRLKCD--SPFGACTPF--S----SDCNEPCKKFGSNYYGGQCVPVGPPPGDGVC   75 (90)
T ss_pred             eEEEeeehhHHHHHHHHccccceeCCeEccC--cccccCCch--H----HHHHHHHHhhccCCCCceeccCCCCCCCcEE
Confidence            577777777777666442  12223344564  379999997  3    69999999877   7999998755   3455


Q ss_pred             ee
Q 044065           78 HC   79 (81)
Q Consensus        78 HC   79 (81)
                      -|
T Consensus        76 ~C   77 (90)
T PF10868_consen   76 YC   77 (90)
T ss_pred             EE
Confidence            44

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	81
1zfu_A	40	Plectasin; defensin,antimicrobial peptide,cysteine	89.82
2lr5_A	38	Micasin; antimicrobial protein; NMR {Arthroderma o	86.03
1fjn_A	39	Defensin MGD-1; cystine stabilized alpha-beta moti	82.1

>1zfu_A Plectasin; defensin,antimicrobial peptide,cysteine stabilized alpha- beta motif, antimicrobial protein; NMR {Pseudoplectania nigrella} PDB: 3e7r_L 3e7u_X

Probab=89.82  E-value=0.17  Score=29.09  Aligned_cols=28  Identities=25%  Similarity=0.689  Sum_probs=23.1

Q ss_pred             CCccchHHHhhc--CCCccceeCCCCcceeec
Q 044065           51 NTGKCWKYCTTE--CKGCICKPVKSEHHCHCM   80 (81)
Q Consensus        51 n~~kCn~wC~~~--CkGG~CK~~~~~h~CHCy   80 (81)
                      |...|..-|++-  -|||+|.-  .+.+|+||
T Consensus        11 n~~aCaaHC~s~~G~rGGyC~~--~~~vC~Cy   40 (40)
T 1zfu_A           11 DDMQCHNHCKSIKGYKGGYCAK--GGFVCKCY   40 (40)
T ss_dssp             CSHHHHHHHHHSTTCCCEEEET--TTTEEEEC
T ss_pred             CHHHHHHHHHhhcCCcccccCC--CCCEEEeC
Confidence            347999999986  69999994  46799998

>2lr5_A Micasin; antimicrobial protein; NMR {Arthroderma otae}

Probab=86.03  E-value=0.15  Score=28.86  Aligned_cols=27  Identities=22%  Similarity=0.463  Sum_probs=21.0

Q ss_pred             ccchHHHh-hcCCCccceeCCCCcceeec
Q 044065           53 GKCWKYCT-TECKGCICKPVKSEHHCHCM   80 (81)
Q Consensus        53 ~kCn~wC~-~~CkGG~CK~~~~~h~CHCy   80 (81)
                      ..|..-|+ .+-|||+|.-. -+..|+||
T Consensus         9 ~~C~~HC~sig~~gGyC~G~-~~~~C~C~   36 (38)
T 2lr5_A            9 NECHAHCLSIGRKFGFCAGP-LRATCTCG   36 (38)
Confidence            58999998 56699999822 36788887

>1fjn_A Defensin MGD-1; cystine stabilized alpha-beta motif, antibacterial, disulfide bond, synthesis, antimicrobial protein; NMR {Synthetic} SCOP: g.3.7.3

Probab=82.10  E-value=0.5  Score=26.78  Aligned_cols=27  Identities=22%  Similarity=0.587  Sum_probs=21.2

Q ss_pred             ccchHHHhh--cCCCccceeCCCCcceeec
Q 044065           53 GKCWKYCTT--ECKGCICKPVKSEHHCHCM   80 (81)
Q Consensus        53 ~kCn~wC~~--~CkGG~CK~~~~~h~CHCy   80 (81)
                      ..|..-|++  +-|||+|.-. -+..|.||
T Consensus         8 ~~C~~HC~si~g~~gGyC~G~-~~~~C~C~   36 (39)
T 1fjn_A            8 YQCHRHCKSIPGRCGGYCGGW-HRLRCTCY   36 (39)
T ss_dssp             HHHHHHHHHSTTCCEEEECSS-TTCSEEEE
T ss_pred             hHHHHHHHhhcCCCceecCCC-cCCEEEee
Confidence            699999995  5799999522 35689997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00