Citrus Sinensis ID: 044119

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810------

MATVVINRKKIEQKQDILKRKGKKNLTDSKPNTRLMSASNLTNHQQNFQNRLLDKNFKTCVTYHENLVGANAFPVFLLQISLFSLISQLLHLALKRLKQPKVVCNVLAGIILGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGIYFIFIVTLKMDKARILKTVRNGWSVSVTCLVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSVTLAKPFFPVIAHAMNELNLLTSELGQLAISCSILSELLSWMNLILAMIFKANNHLLKTEITFCALAFFMFFIVRPAVKWIIRTTPEGKAVKEIYMVAMLLLPGITGALSDATGLNFMSGAVLTGLVVPAGPPLGSAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKAFAILQIIILAAYFARVAAIFLSLIFYKISIRNAILFGLILNIKGVIELLLLTEWRTHKYVDDQTVTTIMLSHTAVTAIVIPLISMYYDPNSTRLQSSCKLEKRTRTVGTTSMDSELRILCGIHHEDSIHNIINLLKALNPTEMSPICAYVVHLVELVGRAESLSAPYDAQRRRLKENSTDRIMRAVTNQTKSSCVSLTSQPFKIIAPYHTMHESICKLAEDKFAPLILIPFHKGLEFQEIETCLHQLNLNIQAYAQCTIGILVDSGLPRSLSSTHFSYDVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKIDFKGNQAENECERQLDEYVMNEFRERNAGNACVVCREMMVNDSTELMSSIRLIENIYDLVIVGKQRGIGSPFEQEMKPWLEYAELGIIGDMLASADFYGGTMSVLVVHCTENQLIATDPINAESPA

cccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcccEEEEHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHccccccccccccccccccccEEEccccccccHHHHHHHHHHHccccccccEEEEEEEEEEcccccccccccHHHHHcccccHHHHHHHHHHHHHHHccccEEEEEEEEEcccccHHHHHHHHHHHccccEEEEccccccccccHHHHHHHHHHHHHccccccEEEEEccccccccccccccEEEEEEEcccccHHHHHHHHHHHHccccEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccccHHHHHHHHHHcccccEEEEcccccccccccccccccccccccccHHHHHHcccccccccEEEEEEEEcccccccccccccccc

ccEEEEEHHHHHHHHHHHHHcccccccccccEEEEEcccHcccHHHHcccEcccccccccccccccccHccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHEcHHHccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHEEEEHHHHcHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHccccccccHHcccccccccccccEEEEEEEccccccHHHHHHHHHHcccccccEEEEEEEEEEcccccccHEEHccccccccccccHHHHHHHHHHHHHHccccEEEEEEEEEccHHHHHHHHHHHHHHccEEEEEEEcccccccccccHHHHHHHHHHHHccccEEEEEEEcccccccccccccEEEEEEEEccccHHHHHHHHHHHHHccccEEEEEEEEccccccccHHHHHHcHHHHHHHHHHHcccccEEEEEEEEccHHHHHHHHHHHcccccEEEEEccccccccHHcccHcHHHcccccccHHHccccccccccEEEEEEEEEcccccccccccccccc

MATVVINRKKIEQKQDILKRKgkknltdskpntrlmsASNLTNHQQNFQNRLLDKNFKTCVTYHenlvganafPVFLLQISLFSLISQLLHLALKRLKQPKVVCNVLAGiilgpsvlghferwnaifhpeeMLLVNTMSIMGGIYFIFIVTLKMDKARILKTVRNGWSVSVTCLVVPFTISSFLTSLLHsyipgvnkgpfLYFFSVTLAKPFFPVIAHAMNELNLLTSELGQLAISCSILSELLSWMNLILAMIFKANNHLLKTEITFCALAFFMFFIVRPAVKWIIRTTPEGKAVKEIYMVAMLLLPgitgalsdatglnfmsGAVLtglvvpagpplgsavvkksEIIMENIFMPFFYIHIGQLFNVYSITNWKAFAILQIIILAAYFARVAAIFLSLIFYKISIRNAILFGLILNIKGVIELLLLTEWrthkyvddqtVTTIMLSHTAVTAIVIPLismyydpnstrlqsscklekrtrtvgttsmdsELRILCGIHHEDSIHNIINLLkalnptemspiCAYVVHLVELVGraeslsapydAQRRRLKENSTDRIMRAVTNqtksscvsltsqpfkiiapyHTMHESICKLaedkfaplilipfhkglefQEIETCLHQLNLNIQAYAQCTIGILvdsglprslssthfsyDVAVFFLGGADDREVMALVSRmaghpsltvTVFKidfkgnqaeNECERQLDEYVMNEfrernagnacVVCREMMVNDSTELMSSIRLIENIYDLVIVGkqrgigspfeqemkPWLEYAELGIIGDMLASADFYGGTMSVLVVHCTenqliatdpinaespa

matvvinrkkieqkqdilkrkgkknltdskpntrLMSASNLTNHQQNFQNRLLDKNFKTCVTYHENLVGANAFPVFLLQISLFSLISQLLHLALKRLKQPKVVCNVLAGIILGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGIYFIFIVTLKMDKARILKTVRNGWSVSVTCLVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSVTLAKPFFPVIAHAMNELNLLTSELGQLAISCSILSELLSWMNLILAMIFKANNHLLKTEITFCALAFFMFFIVRPAVKWIIRTTPEGKAVKEIYMVAMLLLPGITGALSDATGLNFMSGAVLTGLVVPAGPPLGSAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKAFAILQIIILAAYFARVAAIFLSLIFYKISIRNAILFGLILNIKGVIELLLLTEWRTHKYVDDQTVTTIMLSHTAVTAIVIPLISMYYDPnstrlqsscklekrtrtvgttsmdsELRILCGIHHEDSIHNIINLLKALNPTEMSPICAYVVHLVELVGRAeslsapydaqrrrlkenstdrIMRAvtnqtksscvsltsqPFKIIAPYHTMHESICKLAEDKFAPLILIPFHKGLEFQEIETCLHQLNLNIQAYAQCTIGILVDSGLPRSLSSTHFSYDVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKIDFKGNQAENECERQLDEYVMNEFRERNAGNACVVCREMMVNDSTELMSSIRLIENIYDLVIVGKQRGIGSPFEQEMKPWLEYAELGIIGDMLASADFYGGTMSVLVVHCTENqliatdpinaespa

MATVVINRKKIEQKQDILKRKGKKNLTDSKPNTRLMSASNLTNHQQNFQNRLLDKNFKTCVTYHENLVGANAFPVfllqislfslisqllHLALKRLKQPKVVCNVLAGIILGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGIYFIFIVTLKMDKARILKTVRNGWSVSVTCLVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSVTLAKPFFPVIAHAMNELNLLTSELGQLAISCSILSELLSWMNLILAMIFKANNHLLKTEITFCALAFFMFFIVRPAVKWIIRTTPEGKAVKEIYMVAMLLLPGITGALSDATGLNFMSGAVLTGLVVPAGPPLGSAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKafailqiiilaayfaRVAAIFLSLIFYKISIRNAILFGLILNIKGVIELLLLTEWRTHKYVDDQTVTTIMLSHTAVTAIVIPLISMYYDPNSTRLQSSCKLEKRTRTVGTTSMDSELRILCGIHHEDSIHNIINLLKALNPTEMSPICAYVVHLVELVGRAESLSAPYDAQRRRLKENSTDRIMRAVTNQTKSSCVSLTSQPFKIIAPYHTMHESICKLAEDKFAPLILIPFHKGLEFQEIETCLHQLNLNIQAYAQCTIGILVDSGLPRSLSSTHFSYDVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKIDFKGNQAENECERQLDEYVMNEFRERNAGNACVVCREMMVNDSTELMSSIRLIENIYDLVIVGKQRGIGSPFEQEMKPWLEYAELGIIGDMLASADFYGGTMSVLVVHCTENQLIATDPINAESPA

***********************************************FQNRLLDKNFKTCVTYHENLVGANAFPVFLLQISLFSLISQLLHLALKRLKQPKVVCNVLAGIILGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGIYFIFIVTLKMDKARILKTVRNGWSVSVTCLVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSVTLAKPFFPVIAHAMNELNLLTSELGQLAISCSILSELLSWMNLILAMIFKANNHLLKTEITFCALAFFMFFIVRPAVKWIIRTTPEGKAVKEIYMVAMLLLPGITGALSDATGLNFMSGAVLTGLVVPAGPPLGSAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKAFAILQIIILAAYFARVAAIFLSLIFYKISIRNAILFGLILNIKGVIELLLLTEWRTHKYVDDQTVTTIMLSHTAVTAIVIPLISMYYDPNS********************MDSELRILCGIHHEDSIHNIINLLKALNPTEMSPICAYVVHLVELVGRA********************************SCVSLTSQPFKIIAPYHTMHESICKLAEDKFAPLILIPFHKGLEFQEIETCLHQLNLNIQAYAQCTIGILVDSGLPRSLSSTHFSYDVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKIDFKGNQAENECERQLDEYVMNEFRERNAGNACVVCREMMVNDSTELMSSIRLIENIYDLVIVGKQRGIGSPFEQEMKPWLEYAELGIIGDMLASADFYGGTMSVLVVHCTENQLIAT*********

**********************************LMSASNLTNHQQNFQNRLLDKNFKTCVTYHENLVGANAFPVFLLQISLFSLISQLLHLALKRLKQPKVVCNVLAGIILGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGIYFIFIVTLKMDKARILKTVRNGWSVSVTCLVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSVTLAKPFFPVIAHAMNELNLLTSELGQLAISCSILSELLSWMNLILAMIFKANNHLLKTEITFCALAFFMFFIVRPAVKWIIRTTPEGKAVKEIYMVAMLLLPGITGALSDATGLNFMSGAVLTGLVVPAGPPLGSAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKAFAILQIIILAAYFARVAAIFLSLIFYKISIRNAILFGLILNIKGVIELLLLTEWRTHKYVDDQTVTTIMLSHTAVTAIVIPLISMYYDPNSTRLQ*******************ELRILCGIHHEDSIHNIINLLK*********ICAYVVHLVELVGRAE**********************RAVTNQTKSSCVSLTSQPFKIIAPYHTMHESICKLAEDKFAPLILIPFHKGL******TCLHQLNLNIQAYAQCTIGILVDSGLPRSLSSTHFSYDVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKIDFKGN*********LDEYVMNEFRERNAGNACVVCREMMVNDSTELMSSIRLIENIYDLVIVGKQRGI**********WLEYAELGIIGDMLASADFYGGTMSVLVVH******************

*ATVVINRKKIEQKQDILKRKGKKNLTDSKPNTRLMSASNLTNHQQNFQNRLLDKNFKTCVTYHENLVGANAFPVFLLQISLFSLISQLLHLALKRLKQPKVVCNVLAGIILGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGIYFIFIVTLKMDKARILKTVRNGWSVSVTCLVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSVTLAKPFFPVIAHAMNELNLLTSELGQLAISCSILSELLSWMNLILAMIFKANNHLLKTEITFCALAFFMFFIVRPAVKWIIRTTPEGKAVKEIYMVAMLLLPGITGALSDATGLNFMSGAVLTGLVVPAGPPLGSAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKAFAILQIIILAAYFARVAAIFLSLIFYKISIRNAILFGLILNIKGVIELLLLTEWRTHKYVDDQTVTTIMLSHTAVTAIVIPLISMYYDPNSTRLQSSCKLEKRTRTVGTTSMDSELRILCGIHHEDSIHNIINLLKALNPTEMSPICAYVVHLVELVGRAESLSAPYDAQRRRLKENSTDRIMRAVTNQTKSSCVSLTSQPFKIIAPYHTMHESICKLAEDKFAPLILIPFHKGLEFQEIETCLHQLNLNIQAYAQCTIGILVDSGLPRSLSSTHFSYDVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKIDFKGNQAENECERQLDEYVMNEFRERNAGNACVVCREMMVNDSTELMSSIRLIENIYDLVIVGKQRGIGSPFEQEMKPWLEYAELGIIGDMLASADFYGGTMSVLVVHCTENQ*************

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		816	2.2.26 [Sep-21-2011]
Q9SIT5		821	Cation/H(+) antiporter 15	yes	no	0.871	0.866	0.333	1e-118
Q9FGH6		857	Cation/H(+) antiporter 25	no	no	0.898	0.855	0.283	5e-88
Q9LMJ1		829	Cation/H(+) antiporter 14	no	no	0.879	0.866	0.304	3e-86
Q1HDT2		859	Cation/H(+) antiporter 24	no	no	0.872	0.828	0.283	7e-85
Q9FFR9		810	Cation/H(+) antiporter 18	no	no	0.895	0.902	0.287	1e-83
Q8VYD4		867	Cation/H(+) antiporter 23	no	no	0.871	0.820	0.291	5e-83
Q9LUN4		800	Cation/H(+) antiporter 19	no	no	0.872	0.89	0.286	3e-82
Q9SUQ7		820	Cation/H(+) antiporter 17	no	no	0.887	0.882	0.272	8e-82
O22920		831	Cation/H(+) symporter 13	no	no	0.878	0.862	0.304	4e-78
Q9FYC1		817	Cation/H(+) antiporter 4	no	no	0.886	0.884	0.288	1e-75

>sp\|Q9SIT5\|CHX15_ARATH Cation/H(+) antiporter 15 OS=Arabidopsis thaliana GN=CHX15 PE=2 SV=1	Back alignment and function desciption

 Score =  426 bits (1096), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 253/759 (33%), Positives = 422/759 (55%), Gaps = 48/759 (6%)

Query: 94  LKRLKQPKVVCNVLAGIILGPSVLGHFERW-NAIFHPEEMLLVNTMSIMGGIYFIFIVTL 152
           LK  +QP+V+  +L GI+LGPSVLG   ++ + IF    ++++ TM+ +G +YF+F+V +
Sbjct: 58  LKPFRQPRVISEILGGIVLGPSVLGRSTKFAHTIFPQRSVMVLETMANVGLLYFLFLVGV 117

Query: 153 KMDKARILKTVRNGWSVSVTCLVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSVTLAKPF 212
           +MD   + KT +   ++++  +V+PF I +  +  +H     + +G ++ F  V L+   
Sbjct: 118 EMDIMVVRKTGKRALTIAIGGMVLPFLIGAAFSFSMHRSEDHLGQGTYILFLGVALSVTA 177

Query: 213 FPVIAHAMNELNLLTSELGQLAISCSILSELLSWMNLILAMIFKANNHL----LKTEITF 268
           FPV+A  + EL L+ +E+G++++S ++++++ +W+ L LA+    ++      L   I+ 
Sbjct: 178 FPVLARILAELKLINTEIGRISMSAALVNDMFAWILLALAIALAESDKTSFASLWVMISS 237

Query: 269 CALAFFMFFIVRPAVKWIIRTTPEGKAVKEIYMVAMLLLPGITGALSDATGLNFMSGAVL 328
                   F+VRP + WIIR TPEG+   E ++  +L    I+G ++DA G + + GA +
Sbjct: 238 AVFIAVCVFVVRPGIAWIIRKTPEGENFSEFHICLILTGVMISGFITDAIGTHSVFGAFV 297

Query: 329 TGLVVPAGPPLGSAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKAFAILQIIILAA 388
            GLV+P G PLG  +++K E  +  + +P F+   G   N+ +I     +  L ++I  A
Sbjct: 298 FGLVIPNG-PLGLTLIEKLEDFVSGLLLPLFFAISGLKTNIAAIQGPATWLTLFLVIFLA 356

Query: 389 YFARVAAIFLSLIFYKISIRNAILFGLILNIKGVIELLLLTEWRTHKYVDDQTVTTIMLS 448
              +V    +   F+ + +R  I  GL+LN KG++E+++L   +  K +DD+T  T++L 
Sbjct: 357 CAGKVIGTVIVAFFHGMPVREGITLGLLLNTKGLVEMIVLNVGKDQKVLDDETFATMVLV 416

Query: 449 HTAVTAIVIPLISMYYDPNSTRLQSSCKLEKRTRTVGTTSMDSELRILCGIHHEDSIHNI 508
              +T ++ P++++ Y P    ++ S   ++  RT+  T  DSELR+L  +H   ++  I
Sbjct: 417 ALVMTGVITPIVTILYKP----VKKSVSYKR--RTIQQTKPDSELRVLVCVHTPRNVPTI 470

Query: 509 INLLKALNPTEMSPICAYVVHLVELVGRAESLSAPYDAQRR-----RLKENSTDRIMRAV 563
           INLL+A +PT+ SPIC YV+HLVEL GRA ++   ++ ++         +  +D I+ A 
Sbjct: 471 INLLEASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAF 530

Query: 564 TNQTKSSCVSLTSQPFKIIAPYHTMHESICKLAEDKFAPLILIPFHK------GLEFQEI 617
            N  + +   +  QP   I+PY TMHE +C LAEDK    I+IPFHK      G+E    
Sbjct: 531 ENYEQHAAF-VAVQPLTAISPYSTMHEDVCSLAEDKRVSFIIIPFHKQQTVDGGME--ST 587

Query: 618 ETCLHQLNLNIQAYAQCTIGILVDSGL--PRSLSSTHFSYDVAVFFLGGADDREVMALVS 675
                 +N N+   + C++GILVD GL     L+S   S  VAV F GG DDRE +A   
Sbjct: 588 NPAYRLVNQNLLENSPCSVGILVDRGLNGATRLNSNTVSLQVAVLFFGGPDDREALAYAW 647

Query: 676 RMAGHPSLTVTVFKI------------------DFKGNQAENECERQLDEYVMNEFRERN 717
           RMA HP +T+TV +                   D K  + ++  +RQLD+  +N FR  N
Sbjct: 648 RMAQHPGITLTVLRFIHDEDEADTASTRATNDSDLKIPKMDHRKQRQLDDDYINLFRAEN 707

Query: 718 AGNACVVCREMMVNDSTELMSSIRLIENIYDLVIVGKQRGIGSPFEQEMKPWLEYAELGI 777
           A    +V  E +V++  E ++++R +++ +DL IVG+  G+ SP    +  W E  ELG 
Sbjct: 708 AEYESIVYIEKLVSNGEETVAAVRSMDSSHDLFIVGRGEGMSSPLTAGLTDWSECPELGA 767

Query: 778 IGDMLASADFYGGTMSVLVVHCTENQLIATDPIN-AESP 815
           IGD+LAS+DF   T+SVLVV          D ++  ESP
Sbjct: 768 IGDLLASSDF-AATVSVLVVQQYVGSWAQEDDMDFPESP 805

May operate as a cation/H(+) antiporter.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q9FGH6\|CHX25_ARATH Cation/H(+) antiporter 25 OS=Arabidopsis thaliana GN=CHX25 PE=2 SV=1	Back alignment and function description

>sp\|Q9LMJ1\|CHX14_ARATH Cation/H(+) antiporter 14 OS=Arabidopsis thaliana GN=CHX14 PE=2 SV=1	Back alignment and function description

>sp\|Q1HDT2\|CHX24_ARATH Cation/H(+) antiporter 24 OS=Arabidopsis thaliana GN=CHX24 PE=2 SV=2	Back alignment and function description

>sp\|Q9FFR9\|CHX18_ARATH Cation/H(+) antiporter 18 OS=Arabidopsis thaliana GN=CHX18 PE=2 SV=1	Back alignment and function description

>sp\|Q8VYD4\|CHX23_ARATH Cation/H(+) antiporter 23, chloroplastic OS=Arabidopsis thaliana GN=CHX23 PE=1 SV=1	Back alignment and function description

>sp\|Q9LUN4\|CHX19_ARATH Cation/H(+) antiporter 19 OS=Arabidopsis thaliana GN=CHX19 PE=2 SV=1	Back alignment and function description

>sp\|Q9SUQ7\|CHX17_ARATH Cation/H(+) antiporter 17 OS=Arabidopsis thaliana GN=CHX17 PE=1 SV=1	Back alignment and function description

>sp\|O22920\|CHX13_ARATH Cation/H(+) symporter 13 OS=Arabidopsis thaliana GN=CHX13 PE=1 SV=1	Back alignment and function description

>sp\|Q9FYC1\|CHX4_ARATH Cation/H(+) antiporter 4 OS=Arabidopsis thaliana GN=CHX4 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		816
255576723		789	K(+)/H(+) antiporter, putative [Ricinus	0.883	0.913	0.376	1e-146
255559551		1512	monovalent cation:proton antiporter, put	0.877	0.473	0.386	1e-143
357461423		821	K(+)/H(+) antiporter [Medicago truncatul	0.888	0.883	0.356	1e-132
357461421		827	Cation proton exchanger [Medicago trunca	0.915	0.903	0.338	1e-128
255559563		746	monovalent cation:proton antiporter, put	0.865	0.946	0.358	1e-127
296088536		820	unnamed protein product [Vitis vinifera]	0.876	0.871	0.353	1e-127
359477011		837	PREDICTED: cation/H(+) antiporter 15-lik	0.875	0.853	0.345	1e-125
147785381		837	hypothetical protein VITISV_011183 [Viti	0.875	0.853	0.345	1e-125
449459268		837	PREDICTED: cation/H(+) antiporter 15-lik	0.876	0.854	0.347	1e-125
224096008		769	cation proton exchanger [Populus trichoc	0.875	0.928	0.341	1e-125

>gi\|255576723\|ref\|XP_002529249.1\| K(+)/H(+) antiporter, putative [Ricinus communis] gi\|223531285\|gb\|EEF33127.1\| K(+)/H(+) antiporter, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  526 bits (1354), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 278/738 (37%), Positives = 448/738 (60%), Gaps = 17/738 (2%)

Query: 73  FPVFLLQISLFSLISQLLHLALKRLKQPKVVCNVLAGIILGPSVLGHFERW-NAIFHPEE 131
           +PVF +QI L  L+S  ++  L+ L+QP+ VCN+LAGIILGPSVLG  + +    F P+E
Sbjct: 47  YPVFTIQIILAFLVSWTVYFVLRPLRQPRFVCNILAGIILGPSVLGRNKAFMETFFPPKE 106

Query: 132 MLLVNTMSIMGGIYFIFIVTLKMDKARILKTVRNGWSVSVTCLVVPFTISSFLTSLLHSY 191
           ML+ NT++ +G  Y IFI+ +KMD   +L + +  W + +   + PF I+   +S ++  
Sbjct: 107 MLIFNTVARLGTAYLIFIIAVKMDVKTLLSSAKKIWPIGLCSYIFPFVITLIFSSAMYKE 166

Query: 192 IPGVNKG-PFLYFFSVTLAKPFFPVIAHAMNELNLLTSELGQLAISCSILSELLSWMNLI 250
           +    KG   + F    ++  +FPV+A  + EL+LLT+ELGQLA+S S+L ++ S    I
Sbjct: 167 LSACLKGMNMVTFLCGAISVTYFPVVAQFIEELDLLTTELGQLALSSSMLIQMTSHAITI 226

Query: 251 LAMIFKANN--HLLKTEITFCALAFFMFFIVRPAVKWIIRTTPEGKAVKEIYMVAMLLLP 308
           + +    ++  H +   +  CA      +++RPA+   I+ TPEGK +KE+Y++A+L+  
Sbjct: 227 IGVAVTRDSYIHSIYYFLAICATIILAVYVIRPAILLSIKITPEGKPIKEVYVIAILIGT 286

Query: 309 GITGALSDATGLNFMSGAVLTGLVVPAGPPLGSAVVKKSEIIMENIFMPFFYIHIGQLFN 368
            I   ++D    +F+SGA+LTGL++P GPPLG+ +V+KSE+++  IF+P F++ +G L +
Sbjct: 287 LIMAVITDVMWYDFLSGALLTGLIIPDGPPLGAILVEKSELMVMEIFLPLFFVQVGYLTD 346

Query: 369 VYSITNWKAFAILQIIILAAYFARVAAIFLSLIFYKISIRNAILFGLILNIKGVIELLLL 428
           V S+ N KA  ++ +++      ++    L+ ++  I  + A+  GLILN KGV++L   
Sbjct: 347 VSSLQNIKAVTVVLLLVTVCCLTKIIGTLLASLYLNIKFQTALFLGLILNFKGVVDLTTF 406

Query: 429 TEWRTHKYVDDQTVTTIMLSHTAVTAIVIPLISMYYDPNSTRLQSSCKLEKRTRTVGTTS 488
             +++   ++ +  T ++L +  V AI  PLI  +Y P   RL       K +R + +T 
Sbjct: 407 HRFQSRNILEKRCYTALVLFNLLVVAIFYPLIEFFYKPR-IRLAGRYSKTKYSRALQSTP 465

Query: 489 MDSELRILCGIHHEDSIHNIINLLKALNPTEMSPICAYVVHLVELVGRAESLSAPYDAQR 548
              ELR L  I+HE+++  +I LL A N   +SP+CAYVVH+V+LVGR      PY  + 
Sbjct: 466 QAEELRALTCIYHENNVPGMIALLDASNHRAISPLCAYVVHVVDLVGRTAPSLLPYKGKT 525

Query: 549 RRLKEN---STDRIMRAVTNQTKSSCVSLTSQPFKIIAPYHTMHESICKLAEDKFAPLIL 605
           R    +   S+ RIM A  N +K++   ++ QPF ++AP+ TMH  IC LAE+   P I+
Sbjct: 526 RMSNHDPCSSSSRIMSAFINYSKTASGRVSLQPFTMVAPFRTMHNIICNLAEENLIPFII 585

Query: 606 IPFHKG--LEFQEIET-CLHQLNLNIQAYAQCTIGILVDSGLPRSLSSTHFSYDVAVFFL 662
           +PFH+   L+    +   L   N  +QA+A CT+GIL D GL   L+       + V F+
Sbjct: 586 VPFHENQILDLNSKQKGVLQDFNSQLQAHAPCTVGILYDRGLQPRLNKCR----IVVVFI 641

Query: 663 GGADDREVMALVSRMAGHPSLTVTVFKIDFKGNQAENECERQLDEYVMNEFRERNAGNAC 722
           GGADDRE +AL  RM+G+P + +T+ +I+   ++  +  E QLDE ++ EF + N  N  
Sbjct: 642 GGADDREALALAIRMSGNPDMNITMLRINSAKDKDRSITEAQLDELLVKEFIDNNLNNPR 701

Query: 723 VVCREMMVNDSTELMSSIRLIENIYDLVIVGKQRGIGSPFEQEMKPWLEYAELGIIGDML 782
           ++C+++ VNDS +++++++ +   YDLV+VGK  G    FE+++  W+EYAELG+IGDML
Sbjct: 702 ILCQQVSVNDSLQMLNAVQSLRRNYDLVMVGKNSG-ARAFEKDLTEWVEYAELGVIGDML 760

Query: 783 ASADFYGGTMSVLVV-HC 799
           AS DFY    SVLV+ HC
Sbjct: 761 ASTDFYNEMTSVLVMEHC 778

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255559551\|ref\|XP_002520795.1\| monovalent cation:proton antiporter, putative [Ricinus communis] gi\|223539926\|gb\|EEF41504.1\| monovalent cation:proton antiporter, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|357461423\|ref\|XP_003600993.1\| K(+)/H(+) antiporter [Medicago truncatula] gi\|355490041\|gb\|AES71244.1\| K(+)/H(+) antiporter [Medicago truncatula]	Back alignment and taxonomy information

>gi\|357461421\|ref\|XP_003600992.1\| Cation proton exchanger [Medicago truncatula] gi\|355490040\|gb\|AES71243.1\| Cation proton exchanger [Medicago truncatula]	Back alignment and taxonomy information

>gi\|255559563\|ref\|XP_002520801.1\| monovalent cation:proton antiporter, putative [Ricinus communis] gi\|223539932\|gb\|EEF41510.1\| monovalent cation:proton antiporter, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|296088536\|emb\|CBI37527.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359477011\|ref\|XP_002262677.2\| PREDICTED: cation/H(+) antiporter 15-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147785381\|emb\|CAN66285.1\| hypothetical protein VITISV_011183 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449459268\|ref\|XP_004147368.1\| PREDICTED: cation/H(+) antiporter 15-like [Cucumis sativus] gi\|449513321\|ref\|XP_004164295.1\| PREDICTED: cation/H(+) antiporter 15-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224096008\|ref\|XP_002310518.1\| cation proton exchanger [Populus trichocarpa] gi\|222853421\|gb\|EEE90968.1\| cation proton exchanger [Populus trichocarpa]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		816
TAIR\|locus:2054152		821	CHX15 "cation/hydrogen exchang	0.740	0.735	0.329	7.9e-112
TAIR\|locus:2090462		800	CHX19 "cation/H+ exchanger 19"	0.844	0.861	0.285	1.2e-81
TAIR\|locus:2171238		857	CHX25 "cation/H+ exchanger 25"	0.666	0.634	0.281	1.6e-81
TAIR\|locus:2007392		829	CHX14 "cation/hydrogen exchang	0.856	0.843	0.299	2.9e-80
TAIR\|locus:2060827		831	ATCHX13 [Arabidopsis thaliana	0.861	0.845	0.300	2.9e-80
TAIR\|locus:2166168		859	CHX24 "cation/H+ exchanger 24"	0.660	0.627	0.272	2.6e-79
TAIR\|locus:2160457		810	CHX18 "cation/H+ exchanger 18"	0.789	0.795	0.305	6.2e-78
TAIR\|locus:2128484		820	CHX17 "cation/H+ exchanger 17"	0.720	0.717	0.286	8.5e-77
TAIR\|locus:2082142		817	CHX4 "cation/H+ exchanger 4" [	0.659	0.658	0.304	2.5e-75
TAIR\|locus:2172631		822	CHX3 "cation/H+ exchanger 3" [	0.666	0.661	0.289	6e-72

TAIR\|locus:2054152 CHX15 "cation/hydrogen exchanger 15" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 928 (331.7 bits), Expect = 7.9e-112, Sum P(2) = 7.9e-112
 Identities = 208/632 (32%), Positives = 354/632 (56%)

Query:    94 LKRLKQPKVVCNVLAGIILGPSVLGHFERW-NAIFHPEEMLLVNTMSIMGGIYFIFIVTL 152
             LK  +QP+V+  +L GI+LGPSVLG   ++ + IF    ++++ TM+ +G +YF+F+V +
Sbjct:    58 LKPFRQPRVISEILGGIVLGPSVLGRSTKFAHTIFPQRSVMVLETMANVGLLYFLFLVGV 117

Query:   153 KMDKARILKTVRNGWSVSVTCLVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSVTLAKPF 212
             +MD   + KT +   ++++  +V+PF I +  +  +H     + +G ++ F  V L+   
Sbjct:   118 EMDIMVVRKTGKRALTIAIGGMVLPFLIGAAFSFSMHRSEDHLGQGTYILFLGVALSVTA 177

Query:   213 FPVIAHAMNELNLLTSELGQLAISCSILSELLSWMNLILAMIFKANNHLLKTEI-TFCAL 271
             FPV+A  + EL L+ +E+G++++S ++++++ +W+ L LA+    ++      +    + 
Sbjct:   178 FPVLARILAELKLINTEIGRISMSAALVNDMFAWILLALAIALAESDKTSFASLWVMISS 237

Query:   272 AFFM---FFIVRPAVKWIIRTTPEGKAVKEIYMVAMLLLPGITGALSDATGLNFMSGAVL 328
             A F+    F+VRP + WIIR TPEG+   E ++  +L    I+G ++DA G + + GA +
Sbjct:   238 AVFIAVCVFVVRPGIAWIIRKTPEGENFSEFHICLILTGVMISGFITDAIGTHSVFGAFV 297

Query:   329 TGLVVPAGPPLGSAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKXXXXXXXXXXXX 388
              GLV+P GP LG  +++K E  +  + +P F+   G   N+ +I                
Sbjct:   298 FGLVIPNGP-LGLTLIEKLEDFVSGLLLPLFFAISGLKTNIAAIQGPATWLTLFLVIFLA 356

Query:   389 XXXRVAAIFLSLIFYKISIRNAILFGLILNIKGVIELLLLTEWRTHKYVDDQTVTTIMLS 448
                +V    +   F+ + +R  I  GL+LN KG++E+++L   +  K +DD+T  T++L 
Sbjct:   357 CAGKVIGTVIVAFFHGMPVREGITLGLLLNTKGLVEMIVLNVGKDQKVLDDETFATMVLV 416

Query:   449 HTAVTAIVIPLISMYYDPNSTRLQSSCKLEKRTRTVGTTSMDSELRILCGIHHEDSIHNI 508
                +T ++ P++++ Y P    ++ S   ++RT  +  T  DSELR+L  +H   ++  I
Sbjct:   417 ALVMTGVITPIVTILYKP----VKKSVSYKRRT--IQQTKPDSELRVLVCVHTPRNVPTI 470

Query:   509 INLLKALNPTEMSPICAYVVHLVELVGRAESLSAPYDAQRR-RLKENST----DRIMRAV 563
             INLL+A +PT+ SPIC YV+HLVEL GRA ++   ++ ++  R   N T    D I+ A 
Sbjct:   471 INLLEASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAF 530

Query:   564 TNQTKSSCVSLTSQPFKIIAPYHTMHESICKLAEDKFAPLILIPFHK------GLEFQEI 617
              N  + +   +  QP   I+PY TMHE +C LAEDK    I+IPFHK      G+E    
Sbjct:   531 ENYEQHAAF-VAVQPLTAISPYSTMHEDVCSLAEDKRVSFIIIPFHKQQTVDGGME--ST 587

Query:   618 ETCLHQLNLNIQAYAQCTIGILVDSGLPRS--LSSTHFSYDVAVFFLGGADDREVMALVS 675
                   +N N+   + C++GILVD GL  +  L+S   S  VAV F GG DDRE +A   
Sbjct:   588 NPAYRLVNQNLLENSPCSVGILVDRGLNGATRLNSNTVSLQVAVLFFGGPDDREALAYAW 647

Query:   676 RMAGHPSLTVTVFKIDFKGNQAENECERQLDE 707
             RMA HP +T+TV +     ++A+    R  ++
Sbjct:   648 RMAQHPGITLTVLRFIHDEDEADTASTRATND 679

GO:0006812 "cation transport" evidence=IEA;IC

GO:0009507 "chloroplast" evidence=ISM

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=NAS

GO:0006885 "regulation of pH" evidence=IMP

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR\|locus:2090462 CHX19 "cation/H+ exchanger 19" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2171238 CHX25 "cation/H+ exchanger 25" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2007392 CHX14 "cation/hydrogen exchanger 14" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2060827 ATCHX13 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2166168 CHX24 "cation/H+ exchanger 24" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2160457 CHX18 "cation/H+ exchanger 18" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2128484 CHX17 "cation/H+ exchanger 17" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2082142 CHX4 "cation/H+ exchanger 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2172631 CHX3 "cation/H+ exchanger 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SIT5	CHX15_ARATH	No assigned EC number	0.3333	0.8713	0.8660	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00013639001	SubName- Full=Chromosome chr4 scaffold_519, whole genome shotgun sequence; (1178 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		816
PLN03159		832	PLN03159, PLN03159, cation/H(+) antiporter 15; Pro	1e-159
COG0475		397	COG0475, KefB, Kef-type K+ transport systems, memb	1e-30
pfam00999		370	pfam00999, Na_H_Exchanger, Sodium/hydrogen exchang	1e-29
TIGR00932		273	TIGR00932, 2a37, transporter, monovalent cation:pr	5e-24

>gnl\|CDD\|215608 PLN03159, PLN03159, cation/H(+) antiporter 15; Provisional	Back alignment and domain information

 Score =  483 bits (1244), Expect = e-159
 Identities = 275/765 (35%), Positives = 446/765 (58%), Gaps = 51/765 (6%)

Query: 72  AFPVFLLQISLFSLISQLLHLALKRLKQPKVVCNVLAGIILGPSVLGHFERW-NAIFHPE 130
           + P+F+LQ++L  + ++LL   LK  +QP+V+  +L G+ILGPSVLG  E + N IF   
Sbjct: 40  SLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIFPLR 99

Query: 131 EMLLVNTMSIMGGIYFIFIVTLKMDKARILKTVRNGWSVSVTCLVVPFTISSFLTSLLHS 190
            ++++ TM+ +G +YF+F+V ++MD + I +T +   ++++  + +PF I    + + H 
Sbjct: 100 SVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQ 159

Query: 191 YIPGVNKGPFLYFFSVTLAKPFFPVIAHAMNELNLLTSELGQLAISCSILSELLSWMNLI 250
               V++G F+ F  V L+   FPV+A  + E+ L+ +ELG++A+S ++++++ +W+ L 
Sbjct: 160 VSRNVHQGTFILFLGVALSVTAFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLA 219

Query: 251 LAMIFKANNHL----LKTEITFCALAFFMFFIVRPAVKWIIRTTPEGKAVKEIYMVAMLL 306
           LA+    N+      L   ++  A   F F++VRP + WIIR TPEG+   E Y+  +L 
Sbjct: 220 LAIALAENDSTSLASLWVLLSSVAFVLFCFYVVRPGIWWIIRRTPEGETFSEFYICLILT 279

Query: 307 LPGITGALSDATGLNFMSGAVLTGLVVPAGPPLGSAVVKKSEIIMENIFMPFFYIHIGQL 366
              I+G ++DA G + + GA + GLV+P GP LG  +++K E  +  + +P F+   G  
Sbjct: 280 GVMISGFITDAIGTHSVFGAFVFGLVIPNGP-LGVTLIEKLEDFVSGLLLPLFFAISGLK 338

Query: 367 FNVYSITNWKAFAILQIIILAAYFARVAAIFLSLIFYKISIRNAILFGLILNIKGVIELL 426
            NV  I     + +L ++I+ A   ++    +   FY +  R  I  G ++N KG++E++
Sbjct: 339 TNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMI 398

Query: 427 LLTEWRTHKYVDDQTVTTIMLSHTAVTAIVIPLISMYYDPNSTRLQSSCKLEKRTRTVGT 486
           +L   R  + +DD++   ++L   A+TA++ P++++ Y P + RL     +  + RT+  
Sbjct: 399 VLNVGRDQEVLDDESFAVMVLVAVAMTALITPVVTVVYRP-ARRL-----VGYKRRTIQR 452

Query: 487 TSMDSELRILCGIHHEDSIHNIINLLKALNPTEMSPICAYVVHLVELVGRAESLSAPYDA 546
           +  D+ELR+L  +H   ++  IINLL+A +PT+ SPIC YV+HLVEL GRA ++   ++ 
Sbjct: 453 SKHDAELRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVELTGRASAMLIVHNT 512

Query: 547 QR-RRLKENST----DRIMRAVTN-QTKSSCVSLTSQPFKIIAPYHTMHESICKLAEDKF 600
           ++  R   N T    D I+ A  N +  + CVS+  QP   I+PY TMHE +C LAEDK 
Sbjct: 513 RKSGRPALNRTQAQSDHIINAFENYEQHAGCVSV--QPLTAISPYSTMHEDVCNLAEDKR 570

Query: 601 APLILIPFHK------GLEFQEIETCLHQLNLNIQAYAQCTIGILVDSGLPRS--LSSTH 652
             LI+IPFHK      G+E          +N N+ A A C++GILVD GL  +  L+S  
Sbjct: 571 VSLIIIPFHKQQTVDGGME--ATNPAFRGVNQNVLANAPCSVGILVDRGLSGATRLASNQ 628

Query: 653 FSYDVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKIDFKGNQA--------------- 697
            S+ VAV F GG DDRE +A   RM+ HP +T+TV +     + A               
Sbjct: 629 VSHHVAVLFFGGPDDREALAYAWRMSEHPGITLTVMRFIPGEDAAPTASQPASSPSDPRI 688

Query: 698 -----ENECERQLDEYVMNEFRERNAGNACVVCREMMVNDSTELMSSIRLIENIYDLVIV 752
                + + ERQLDE  +NEFR RNAGN  +V  E +V++  E +++IR +++ +DL IV
Sbjct: 689 PTVETDGKKERQLDEEYINEFRARNAGNESIVYTEKVVSNGEETVAAIRSMDSAHDLFIV 748

Query: 753 GKQRGIGSPFEQEMKPWLEYAELGIIGDMLASADFYGGTMSVLVV 797
           G+ +G+ SP    +  W E  ELG IGD+LAS+DF   T+SVLVV
Sbjct: 749 GRGQGMISPLTAGLTDWSECPELGAIGDLLASSDF-AATVSVLVV 792

Length = 832

>gnl\|CDD\|223551 COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family	Back alignment and domain information

>gnl\|CDD\|233195 TIGR00932, 2a37, transporter, monovalent cation:proton antiporter-2 (CPA2) family	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		816
PLN03159		832	cation/H(+) antiporter 15; Provisional	100.0
KOG1650		769	consensus Predicted K+/H+-antiporter [Inorganic io	100.0
PRK03562		621	glutathione-regulated potassium-efflux system prot	100.0
PRK10669		558	putative cation:proton antiport protein; Provision	100.0
PRK03659		601	glutathione-regulated potassium-efflux system prot	100.0
COG0475		397	KefB Kef-type K+ transport systems, membrane compo	100.0
PRK05326		562	potassium/proton antiporter; Reviewed	100.0
TIGR00932		273	2a37 transporter, monovalent cation:proton antipor	100.0
PF00999		380	Na_H_Exchanger: Sodium/hydrogen exchanger family;	100.0
COG4651		408	RosB Kef-type K+ transport system, predicted NAD-b	100.0
TIGR00844		810	c_cpa1 na(+)/h(+) antiporter. This model is specif	99.96
TIGR00831		525	a_cpa1 Na+/H+ antiporter, bacterial form. This mod	99.96
COG0025		429	NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg	99.94
COG3263		574	NhaP-type Na+/H+ and K+/H+ antiporters with a uniq	99.92
TIGR00840		559	b_cpa1 sodium/hydrogen exchanger 3. This model is	99.91
KOG1965		575	consensus Sodium/hydrogen exchanger protein [Inorg	99.72
PRK14853		423	nhaA pH-dependent sodium/proton antiporter; Provis	99.72
KOG4505		467	consensus Na+/H+ antiporter [Inorganic ion transpo	99.67
TIGR00773		373	NhaA Na+/H+ antiporter NhaA. These proteins are me	99.49
PRK11175		305	universal stress protein UspE; Provisional	99.46
PRK14856		438	nhaA pH-dependent sodium/proton antiporter; Provis	99.15
cd01988		132	Na_H_Antiporter_C The C-terminal domain of a subfa	99.13
PRK09560		389	nhaA pH-dependent sodium/proton antiporter; Review	99.12
PRK09561		388	nhaA pH-dependent sodium/proton antiporter; Review	99.1
KOG1966		670	consensus Sodium/hydrogen exchanger protein [Inorg	99.08
PRK14854		383	nhaA pH-dependent sodium/proton antiporter; Provis	99.05
PRK14855		423	nhaA pH-dependent sodium/proton antiporter; Provis	99.02
PF06965		378	Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IP	98.83
COG3004		390	NhaA Na+/H+ antiporter [Inorganic ion transport an	98.8
cd01988		132	Na_H_Antiporter_C The C-terminal domain of a subfa	98.4
cd01989		146	STK_N The N-terminal domain of Eukaryotic Serine T	98.33
PF00582		140	Usp: Universal stress protein family; InterPro: IP	98.26
cd01987		124	USP_OKCHK USP domain is located between the N-term	98.24
PF00582		140	Usp: Universal stress protein family; InterPro: IP	98.2
cd01989		146	STK_N The N-terminal domain of Eukaryotic Serine T	98.05
PRK15456		142	universal stress protein UspG; Provisional	98.04
PRK15005		144	universal stress protein F; Provisional	98.02
PRK15005		144	universal stress protein F; Provisional	97.93
cd00293		130	USP_Like Usp: Universal stress protein family. The	97.9
PRK09982		142	universal stress protein UspD; Provisional	97.87
cd01987		124	USP_OKCHK USP domain is located between the N-term	97.87
PRK09982		142	universal stress protein UspD; Provisional	97.79
cd00293		130	USP_Like Usp: Universal stress protein family. The	97.79
PF05684		378	DUF819: Protein of unknown function (DUF819); Inte	97.78
PRK12460		312	2-keto-3-deoxygluconate permease; Provisional	97.73
PRK15118		144	universal stress global response regulator UspA; P	97.72
PRK15456		142	universal stress protein UspG; Provisional	97.7
PRK15118		144	universal stress global response regulator UspA; P	97.7
PRK10116		142	universal stress protein UspC; Provisional	97.68
PF03812		314	KdgT: 2-keto-3-deoxygluconate permease; InterPro:	97.6
TIGR00698		335	conserved hypothetical integral membrane protein.	97.57
PRK10116		142	universal stress protein UspC; Provisional	97.45
PRK11175		305	universal stress protein UspE; Provisional	97.44
COG0786		404	GltS Na+/glutamate symporter [Amino acid transport	97.28
PF03601		305	Cons_hypoth698: Conserved hypothetical protein 698	97.09
PF03616		368	Glt_symporter: Sodium/glutamate symporter; InterPr	97.06
COG3180		352	AbrB Putative ammonia monooxygenase [General funct	97.0
PRK03562		621	glutathione-regulated potassium-efflux system prot	96.8
PRK12652		357	putative monovalent cation/H+ antiporter subunit E	96.75
TIGR00793		314	kdgT 2-keto-3-deoxygluconate transporter. This fam	96.7
COG0385		319	Predicted Na+-dependent transporter [General funct	96.65
PF03390		414	2HCT: 2-hydroxycarboxylate transporter family; Int	96.61
COG3493		438	CitS Na+/citrate symporter [Energy production and	96.6
COG0798		342	ACR3 Arsenite efflux pump ACR3 and related permeas	96.47
PRK03659		601	glutathione-regulated potassium-efflux system prot	96.47
PF13593		313	DUF4137: SBF-like CPA transporter family (DUF4137)	96.46
TIGR00932		273	2a37 transporter, monovalent cation:proton antipor	96.45
PRK10669		558	putative cation:proton antiport protein; Provision	96.4
TIGR00832		328	acr3 arsenical-resistance protein. The first prote	96.16
COG0475		397	KefB Kef-type K+ transport systems, membrane compo	96.1
COG0589		154	UspA Universal stress protein UspA and related nuc	96.07
COG0589		154	UspA Universal stress protein UspA and related nuc	95.94
PF03601		305	Cons_hypoth698: Conserved hypothetical protein 698	95.81
TIGR00783		347	ccs citrate carrier protein, CCS family. These pro	95.37
PRK05326		562	potassium/proton antiporter; Reviewed	95.33
PF05145		318	AmoA: Putative ammonia monooxygenase; InterPro: IP	95.27
PF03956		191	DUF340: Membrane protein of unknown function (DUF3	95.22
PRK05274		326	2-keto-3-deoxygluconate permease; Provisional	95.16
PF06826		169	Asp-Al_Ex: Predicted Permease Membrane Region; Int	95.01
COG2855		334	Predicted membrane protein [Function unknown]	95.0
PF01758		187	SBF: Sodium Bile acid symporter family; InterPro:	94.86
COG2855		334	Predicted membrane protein [Function unknown]	94.81
PLN03159		832	cation/H(+) antiporter 15; Provisional	94.52
TIGR00698		335	conserved hypothetical integral membrane protein.	94.5
TIGR00210		398	gltS sodium--glutamate symport carrier (gltS).	94.38
PRK12652		357	putative monovalent cation/H+ antiporter subunit E	94.17
PRK03818		552	putative transporter; Validated	94.02
TIGR00844		810	c_cpa1 na(+)/h(+) antiporter. This model is specif	93.9
TIGR00831		525	a_cpa1 Na+/H+ antiporter, bacterial form. This mod	93.45
TIGR03802		562	Asp_Ala_antiprt aspartate-alanine antiporter. All	93.12
TIGR00841		286	bass bile acid transporter. Functionally character	92.94
TIGR03802		562	Asp_Ala_antiprt aspartate-alanine antiporter. All	92.82
TIGR03082		156	Gneg_AbrB_dup membrane protein AbrB duplication. T	92.3
PF03616		368	Glt_symporter: Sodium/glutamate symporter; InterPr	91.98
TIGR01625		154	YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplicati	91.7
PRK10490		895	sensor protein KdpD; Provisional	91.32
PRK04972		558	putative transporter; Provisional	91.23
TIGR03082		156	Gneg_AbrB_dup membrane protein AbrB duplication. T	90.06
COG1346		230	LrgB Putative effector of murein hydrolase [Cell e	89.87
PRK12460		312	2-keto-3-deoxygluconate permease; Provisional	87.85
PRK04288		232	antiholin-like protein LrgB; Provisional	87.74
PRK10490		895	sensor protein KdpD; Provisional	86.93
PRK04972		558	putative transporter; Provisional	86.9
COG2985		544	Predicted permease [General function prediction on	86.79
PF03956		191	DUF340: Membrane protein of unknown function (DUF3	86.69
TIGR00808		254	malonate_madM malonate transporter, MadM subunit.	86.58
PF02040		423	ArsB: Arsenical pump membrane protein; InterPro: I	86.11
COG5505		384	Predicted integral membrane protein [Function unkn	85.93
TIGR00946		321	2a69 he Auxin Efflux Carrier (AEC) Family.	85.92
COG0025		429	NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg	85.63
KOG2310		646	consensus DNA repair exonuclease MRE11 [Replicatio	85.18
COG0786		404	GltS Na+/glutamate symporter [Amino acid transport	84.53
PRK10711		231	hypothetical protein; Provisional	83.77
PF00999		380	Na_H_Exchanger: Sodium/hydrogen exchanger family;	83.4
TIGR00210		398	gltS sodium--glutamate symport carrier (gltS).	83.22
PF03547		385	Mem_trans: Membrane transport protein; InterPro: I	82.53
COG1346		230	LrgB Putative effector of murein hydrolase [Cell e	82.08
COG2205		890	KdpD Osmosensitive K+ channel histidine kinase [Si	81.95
PRK03818		552	putative transporter; Validated	81.16
TIGR00659		226	conserved hypothetical protein TIGR00659. Members	80.9
COG4651		408	RosB Kef-type K+ transport system, predicted NAD-b	80.68
PRK03359		256	putative electron transfer flavoprotein FixA; Revi	80.57

>PLN03159 cation/H(+) antiporter 15; Provisional	Back alignment and domain information

Probab=100.00  E-value=8.1e-146  Score=1314.28  Aligned_cols=724  Identities=37%  Similarity=0.674  Sum_probs=660.5

Q ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHhhccccccccccccc-cCCcchHHHHHHHHHHHHHHHH
Q 044119           69 GANAFPVFLLQISLFSLISQLLHLALKRLKQPKVVCNVLAGIILGPSVLGHFERWNA-IFHPEEMLLVNTMSIMGGIYFI  147 (816)
Q Consensus        69 l~~~l~~~llqi~lil~~~~l~~~ll~rl~~P~iv~~IlaGIilGP~~lg~~~~~~~-lfp~~~~~~l~~la~iGl~~ll  147 (816)
                      ++|++|++++|+++++++++++++++||+|||++++||++||++||+++|+++.+.+ +||.++.+.+++++++|++++|
T Consensus        37 l~~~l~~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~~~~l~~la~lGlillm  116 (832)
T PLN03159         37 LDFSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIFPLRSVMVLETMANLGLLYFL  116 (832)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcCCcchHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999999999999988888 9999888899999999999999


Q ss_pred             HHhhhccChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHHHhccCcHHHHHHHHHhccccC
Q 044119          148 FIVTLKMDKARILKTVRNGWSVSVTCLVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSVTLAKPFFPVIAHAMNELNLLT  227 (816)
Q Consensus       148 F~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~  227 (816)
                      |++|+|+|++.+||++|+++.+|+.++++|+++|++++++++....+......++++|+++|.||+|+++++|+|+|+++
T Consensus       117 FliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~~~~~~~~~~~~l~~g~alS~Ts~pVv~riL~Elkll~  196 (832)
T PLN03159        117 FLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQVSRNVHQGTFILFLGVALSVTAFPVLARILAEIKLIN  196 (832)
T ss_pred             HHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhHHHHHHHHHHcCccc
Confidence            99999999999999999999999999999999999888877432111222356789999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHhh-c-c-c-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchhHHHHH
Q 044119          228 SELGQLAISCSILSELLSWMNLILAMIF-K-A-N-NHLLKTEITFCALAFFMFFIVRPAVKWIIRTTPEGKAVKEIYMVA  303 (816)
Q Consensus       228 s~~g~l~ls~a~i~Di~~~vll~~~~~~-~-~-~-~~~l~~~l~~v~~~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~~~  303 (816)
                      ++.||+++++++++|+++|+++++.... . + . ...++.++..+++++++.+++||++.|+.++++++++.++.++.+
T Consensus       197 s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~~~~~~l~~~l~~~~f~~~~~~v~r~~~~~~~r~~~~~~~~~e~~v~~  276 (832)
T PLN03159        197 TELGRIAMSAALVNDMCAWILLALAIALAENDSTSLASLWVLLSSVAFVLFCFYVVRPGIWWIIRRTPEGETFSEFYICL  276 (832)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCcccchhHH
Confidence            9999999999999999999999544333 2 2 1 345677777788888899999999999999999888888999999


Q ss_pred             HHHHHHHHHHHHHHhChhHHHHHHHHhhhccCCCCchhHHHHHhHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHH
Q 044119          304 MLLLPGITGALSDATGLNFMSGAVLTGLVVPAGPPLGSAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKAFAILQI  383 (816)
Q Consensus       304 vl~~~~~~~~lae~lG~~~ilGaflaGL~i~~~~~~~~~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~~~~~~~~~~~  383 (816)
                      +++++++++++++.+|+|+++|||++|+++|+. ++++.+.+|++++++++|+|+||+++|+++|+..+.+...|..+++
T Consensus       277 il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~~-~~~~~l~ekle~~~~~lflPlFFv~vGl~idl~~l~~~~~~~~~~~  355 (832)
T PLN03159        277 ILTGVMISGFITDAIGTHSVFGAFVFGLVIPNG-PLGVTLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQGPATWGLLVL  355 (832)
T ss_pred             HHHHHHHHHHHHHHhCccHHHHHHHHhhccCCc-chHHHHHHHHHHHHHHHHHHHHHHHhhheeeHHHhcCchHHHHHHH
Confidence            999999999999999999999999999999984 8999999999999999999999999999999988844345666677


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhHHHHHHHHHHHHhhhccccCcchhhHHHHHHHHHHHhHhHHHHhh
Q 044119          384 IILAAYFARVAAIFLSLIFYKISIRNAILFGLILNIKGVIELLLLTEWRTHKYVDDQTVTTIMLSHTAVTAIVIPLISMY  463 (816)
Q Consensus       384 ii~~~~~~K~~~~~l~~~~~~~~~~e~l~lgl~m~~kG~v~l~~~~~~~~~~~i~~~~f~~lvl~vll~t~i~~pli~~l  463 (816)
                      ++++++++|+++++++++++|+|++|++.+|++|++||+++++++++|++.|+++++.|++++++++++|.+++|++.++
T Consensus       356 liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gvi~~~~f~~lVl~avl~T~i~~Plv~~l  435 (832)
T PLN03159        356 VIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDESFAVMVLVAVAMTALITPVVTVV  435 (832)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCccCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            77888999999999999999999999999999999999999999999999999999999999999998899999999999


Q ss_pred             cCCCccchhhhhhhhhcccccCCCCCCCCcEEEEeecCCCcHHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCcccccc
Q 044119          464 YDPNSTRLQSSCKLEKRTRTVGTTSMDSELRILCGIHHEDSIHNIINLLKALNPTEMSPICAYVVHLVELVGRAESLSAP  543 (816)
Q Consensus       464 y~p~~~~~~~~~~~~~~~rti~~~~~~~e~riLv~v~~~~~v~~li~L~~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~  543 (816)
                      |||+| ||..|    + +|++++.++++|+|||+|+|+++|+++|++|++++++++++|+++|++||+||+||++|++++
T Consensus       436 y~p~r-k~~~~----~-~r~i~~~~~~~elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~lhLveL~~r~~~~l~~  509 (832)
T PLN03159        436 YRPAR-RLVGY----K-RRTIQRSKHDAELRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVELTGRASAMLIV  509 (832)
T ss_pred             hCHHh-hhccc----c-ccccccCCCCCceeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEEEEEEeecCCCccceee
Confidence            99999 99999    8 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhc-----ccccchhHHHHHHhc-ccccCccccceeeeEEecCCCChhHHHHHHHHhcCCCEEEEcCCCCCCcc--
Q 044119          544 YDAQRRR-----LKENSTDRIMRAVTN-QTKSSCVSLTSQPFKIIAPYHTMHESICKLAEDKFAPLILIPFHKGLEFQ--  615 (816)
Q Consensus       544 ~~~~~~~-----~~~~~~~~i~~af~~-~~~~~~v~~~v~~~~~vsp~~~m~~~I~~~A~e~~~~liilp~h~~~~~~--  615 (816)
                      |+.+++.     ....++|++++||+. ++..+.|+  |+++|+||||++||+|||++|+||++++||+||||+|+.|  
T Consensus       510 h~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~v~--v~~~t~vs~~~~mh~dIc~~A~d~~~slIilpfhk~~~~dg~  587 (832)
T PLN03159        510 HNTRKSGRPALNRTQAQSDHIINAFENYEQHAGCVS--VQPLTAISPYSTMHEDVCNLAEDKRVSLIIIPFHKQQTVDGG  587 (832)
T ss_pred             eecccccccccccccccccHHHHHHHHHHhhcCceE--EEEEEEEeCcccHHHHHHHHHHhcCCCEEEECCCCccCCCCC
Confidence            9876431     133568999999999 43335799  9999999999999999999999999999999999999977  


Q ss_pred             -hhhhh-hHHHHHHHhhcCCCcEEEEecCCCCC-CC-CCCCcceEEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEEE
Q 044119          616 -EIETC-LHQLNLNIQAYAQCTIGILVDSGLPR-SL-SSTHFSYDVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKID  691 (816)
Q Consensus       616 -~~~~~-~~~~n~~vl~~ApCsVgIlVdrg~~~-~~-~~~~~~~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~  691 (816)
                       ++.+. +|.+|+|||++||||||||||||..+ .+ +.....+||+++|+|||||||||+||+|||+||++++||+||+
T Consensus       588 ~~~~~~~~r~~n~~VL~~ApCsVgIlVDRg~~~~~~~~~~~~~~~v~~~F~GG~DDREALa~a~rma~~p~v~lTVirf~  667 (832)
T PLN03159        588 MEATNPAFRGVNQNVLANAPCSVGILVDRGLSGATRLASNQVSHHVAVLFFGGPDDREALAYAWRMSEHPGITLTVMRFI  667 (832)
T ss_pred             ccccCchHHHHHHHHHccCCCCEEEEEeCCCCccccccccccceeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEE
Confidence             44555 99999999999999999999999764 11 2344578999999999999999999999999999999999999


Q ss_pred             eCCCCCc--------------------hhhhhhhHHHHHHHHHHhcCCCCceEEEEEEeCChHHHHHHHHhhhcCccEEE
Q 044119          692 FKGNQAE--------------------NECERQLDEYVMNEFRERNAGNACVVCREMMVNDSTELMSSIRLIENIYDLVI  751 (816)
Q Consensus       692 ~~~~~~~--------------------~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~~~~~~~~i~~~~~~~DLvi  751 (816)
                      +.++..+                    ++.|+++|+++++|||.++..+++|.|+|++|+|++|++.+||+|+++|||+|
T Consensus       668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~D~~~~~ef~~~~~~~~~v~y~E~~V~~~~e~~~~l~~~~~~ydL~i  747 (832)
T PLN03159        668 PGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINEFRARNAGNESIVYTEKVVSNGEETVAAIRSMDSAHDLFI  747 (832)
T ss_pred             cccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHHHHHhhccCcEEE
Confidence            7532111                    35688999999999999998888999999999999999999999998999999


Q ss_pred             EcccCCCCCcccccCCCccCCCccchhhhhhhcCCCCCCcccEEEEeeecc
Q 044119          752 VGKQRGIGSPFEQEMKPWLEYAELGIIGDMLASADFYGGTMSVLVVHCTEN  802 (816)
Q Consensus       752 VGr~~~~~s~~~~gl~~W~e~~eLG~igd~Las~d~~~~~~SVLvvqq~~~  802 (816)
                      |||+|+.+|++|+||+||+||||||+|||+|||+|| .+++||||||||..
T Consensus       748 VGr~~~~~~~~~~gL~~w~e~pELG~iGD~LaS~d~-~~~~SVLVvQQ~~~  797 (832)
T PLN03159        748 VGRGQGMISPLTAGLTDWSECPELGAIGDLLASSDF-AATVSVLVVQQYVG  797 (832)
T ss_pred             EecCCCCCcchhccccccccCCccchhhhHHhcCCC-CCceeEEEEEeecc
Confidence            999998779999999999999999999999999999 99999999999974

>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional	Back alignment and domain information

>PRK10669 putative cation:proton antiport protein; Provisional	Back alignment and domain information

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional	Back alignment and domain information

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK05326 potassium/proton antiporter; Reviewed	Back alignment and domain information

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family	Back alignment and domain information

>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]	Back alignment and domain information

>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00844 c_cpa1 na(+)/h(+) antiporter	Back alignment and domain information

>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form	Back alignment and domain information

>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3	Back alignment and domain information

>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional	Back alignment and domain information

>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00773 NhaA Na+/H+ antiporter NhaA	Back alignment and domain information

>PRK11175 universal stress protein UspE; Provisional	Back alignment and domain information

>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional	Back alignment and domain information

>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea	Back alignment and domain information

>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed	Back alignment and domain information

>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed	Back alignment and domain information

>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional	Back alignment and domain information

>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional	Back alignment and domain information

>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH	Back alignment and domain information

>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea	Back alignment and domain information

>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases	Back alignment and domain information

>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents	Back alignment and domain information

>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family	Back alignment and domain information

>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents	Back alignment and domain information

>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases	Back alignment and domain information

>PRK15456 universal stress protein UspG; Provisional	Back alignment and domain information

>PRK15005 universal stress protein F; Provisional	Back alignment and domain information

>PRK15005 universal stress protein F; Provisional	Back alignment and domain information

>cd00293 USP_Like Usp: Universal stress protein family	Back alignment and domain information

>PRK09982 universal stress protein UspD; Provisional	Back alignment and domain information

>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family	Back alignment and domain information

>PRK09982 universal stress protein UspD; Provisional	Back alignment and domain information

>cd00293 USP_Like Usp: Universal stress protein family	Back alignment and domain information

>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species	Back alignment and domain information

>PRK12460 2-keto-3-deoxygluconate permease; Provisional	Back alignment and domain information

>PRK15118 universal stress global response regulator UspA; Provisional	Back alignment and domain information

>PRK15456 universal stress protein UspG; Provisional	Back alignment and domain information

>PRK15118 universal stress global response regulator UspA; Provisional	Back alignment and domain information

>PRK10116 universal stress protein UspC; Provisional	Back alignment and domain information

>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi	Back alignment and domain information

>TIGR00698 conserved hypothetical integral membrane protein	Back alignment and domain information

>PRK10116 universal stress protein UspC; Provisional	Back alignment and domain information

>PRK11175 universal stress protein UspE; Provisional	Back alignment and domain information

>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]	Back alignment and domain information

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins	Back alignment and domain information

>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate	Back alignment and domain information

>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]	Back alignment and domain information

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional	Back alignment and domain information

>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed	Back alignment and domain information

>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter	Back alignment and domain information

>COG0385 Predicted Na+-dependent transporter [General function prediction only]	Back alignment and domain information

>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom	Back alignment and domain information

>COG3493 CitS Na+/citrate symporter [Energy production and conversion]	Back alignment and domain information

>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional	Back alignment and domain information

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)	Back alignment and domain information

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family	Back alignment and domain information

>PRK10669 putative cation:proton antiport protein; Provisional	Back alignment and domain information

>TIGR00832 acr3 arsenical-resistance protein	Back alignment and domain information

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]	Back alignment and domain information

>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]	Back alignment and domain information

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins	Back alignment and domain information

>TIGR00783 ccs citrate carrier protein, CCS family	Back alignment and domain information

>PRK05326 potassium/proton antiporter; Reviewed	Back alignment and domain information

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase	Back alignment and domain information

>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments	Back alignment and domain information

>PRK05274 2-keto-3-deoxygluconate permease; Provisional	Back alignment and domain information

>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters	Back alignment and domain information

>COG2855 Predicted membrane protein [Function unknown]	Back alignment and domain information

>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes	Back alignment and domain information

>COG2855 Predicted membrane protein [Function unknown]	Back alignment and domain information

>PLN03159 cation/H(+) antiporter 15; Provisional	Back alignment and domain information

>TIGR00698 conserved hypothetical integral membrane protein	Back alignment and domain information

>TIGR00210 gltS sodium--glutamate symport carrier (gltS)	Back alignment and domain information

>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed	Back alignment and domain information

>PRK03818 putative transporter; Validated	Back alignment and domain information

>TIGR00844 c_cpa1 na(+)/h(+) antiporter	Back alignment and domain information

>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form	Back alignment and domain information

>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter	Back alignment and domain information

>TIGR00841 bass bile acid transporter	Back alignment and domain information

>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter	Back alignment and domain information

>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication	Back alignment and domain information

>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate	Back alignment and domain information

>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain	Back alignment and domain information

>PRK10490 sensor protein KdpD; Provisional	Back alignment and domain information

>PRK04972 putative transporter; Provisional	Back alignment and domain information

>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication	Back alignment and domain information

>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PRK12460 2-keto-3-deoxygluconate permease; Provisional	Back alignment and domain information

>PRK04288 antiholin-like protein LrgB; Provisional	Back alignment and domain information

>PRK10490 sensor protein KdpD; Provisional	Back alignment and domain information

>PRK04972 putative transporter; Provisional	Back alignment and domain information

>COG2985 Predicted permease [General function prediction only]	Back alignment and domain information

>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments	Back alignment and domain information

>TIGR00808 malonate_madM malonate transporter, MadM subunit	Back alignment and domain information

>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes	Back alignment and domain information

>COG5505 Predicted integral membrane protein [Function unknown]	Back alignment and domain information

>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family	Back alignment and domain information

>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]	Back alignment and domain information

>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]	Back alignment and domain information

>PRK10711 hypothetical protein; Provisional	Back alignment and domain information

>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]	Back alignment and domain information

>TIGR00210 gltS sodium--glutamate symport carrier (gltS)	Back alignment and domain information

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea	Back alignment and domain information

>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>PRK03818 putative transporter; Validated	Back alignment and domain information

>TIGR00659 conserved hypothetical protein TIGR00659	Back alignment and domain information

>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK03359 putative electron transfer flavoprotein FixA; Reviewed	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		816
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 63.7 bits (154), Expect = 2e-10
 Identities = 79/482 (16%), Positives = 149/482 (30%), Gaps = 142/482 (29%)

Query: 273 FFMFFIVRPAVKWIIRTTPEGKAVKEIYMVAMLLLPGITG---------ALSDATGLNFM 323
           F  + + R      +R     +A+ E+     +L+ G+ G                   M
Sbjct: 126 FAKYNVSRLQPYLKLR-----QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180

Query: 324 SGAV-----------------LTGLVVPAGPPLGSAVVKKSEIIME---------NIFMP 357
              +                 L  L+    P   S     S I +           +   
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 358 FFYIH---IGQLFNVYSITNWKAFAIL-QIIILAAYFARVAAIFLSLIFYKISIRNAI-- 411
             Y +   +  L NV +   W AF +  +I++   +  +V     +     IS+ +    
Sbjct: 241 KPYENCLLV--LLNVQNAKAWNAFNLSCKILLTTRF-KQVTDFLSAATTTHISLDHHSMT 297

Query: 412 --------LFGLILNIK----------------GVIELLL---LTEWRTHKYVDDQTVTT 444
                   L    L+ +                 +I   +   L  W   K+V+   +TT
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357

Query: 445 IM------------------LS----HTAVTAIVIPLI---SMYYDPNS--TRLQSSCKL 477
           I+                  LS       +  I++ LI    +  D      +L     +
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417

Query: 478 EKRTRTVGTTSMDSELRILCGIHHEDSIHNII----NLLKALNPTEMSP------ICAYV 527
           EK+ +    +     L +   + +E ++H  I    N+ K  +  ++ P        +++
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477

Query: 528 V-HL--VELVGRAESLSAPY-DAQRRRLKENSTDRIMRAVTNQTKSSCVSLTSQPFKIIA 583
             HL  +E   R       + D   R L++    +I    T    S  +  T Q  K   
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDF--RFLEQ----KIRHDSTAWNASGSILNTLQQLKFYK 531

Query: 584 PYHTMHESICKLAEDKFAPLI--LIPFHKGLEFQEI---ETCLHQLNLN-------IQAY 631
           PY      IC   + K+  L+  ++ F   +E   I    T L ++ L         +A+
Sbjct: 532 PY------ICD-NDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAH 584

Query: 632 AQ 633
            Q
Sbjct: 585 KQ 586

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		816
1zcd_A		388	Na(+)/H(+) antiporter 1; membrane protein; 3.45A {	99.9
3mt0_A		290	Uncharacterized protein PA1789; structural genomic	99.54
3olq_A		319	Universal stress protein E; structural genomics, P	99.49
3loq_A		294	Universal stress protein; structural genomics, PSI	99.48
3cis_A		309	Uncharacterized protein; alpha/beta hydrolase, ATP	99.43
3ab8_A		268	Putative uncharacterized protein TTHA0350; tandem-	99.37
3s3t_A		146	Nucleotide-binding protein, universal stress PROT	98.31
3s3t_A		146	Nucleotide-binding protein, universal stress PROT	98.31
1mjh_A		162	Protein (ATP-binding domain of protein MJ0577); hy	98.26
3hgm_A		147	Universal stress protein TEAD; rossman fold, signa	98.22
3fdx_A		143	Putative filament protein / universal stress PROT;	98.21
3idf_A		138	USP-like protein; universal, stress, PSI, MCSG, st	98.18
2dum_A		170	Hypothetical protein PH0823; conserved hypothetica	98.18
3fg9_A		156	Protein of universal stress protein USPA family; A	98.16
2dum_A		170	Hypothetical protein PH0823; conserved hypothetica	98.15
3hgm_A		147	Universal stress protein TEAD; rossman fold, signa	98.14
2z08_A		137	Universal stress protein family; uncharacterized c	98.13
3tnj_A		150	Universal stress protein (USP); structural genomic	98.13
3dlo_A		155	Universal stress protein; unknown function, struct	98.13
1mjh_A		162	Protein (ATP-binding domain of protein MJ0577); hy	98.12
3fdx_A		143	Putative filament protein / universal stress PROT;	98.11
3dlo_A		155	Universal stress protein; unknown function, struct	98.05
3fg9_A		156	Protein of universal stress protein USPA family; A	98.04
2z08_A		137	Universal stress protein family; uncharacterized c	98.04
2gm3_A		175	Unknown protein; AT3G01520, putative ethylene-resp	98.03
1jmv_A		141	USPA, universal stress protein A; chaperone; 1.85A	97.97
1tq8_A		163	Hypothetical protein RV1636; MTCY01B2.28, structur	97.97
1jmv_A		141	USPA, universal stress protein A; chaperone; 1.85A	97.95
3idf_A		138	USP-like protein; universal, stress, PSI, MCSG, st	97.95
1tq8_A		163	Hypothetical protein RV1636; MTCY01B2.28, structur	97.89
3tnj_A		150	Universal stress protein (USP); structural genomic	97.83
1q77_A		138	Hypothetical protein AQ_178; structural genomics,	97.78
2gm3_A		175	Unknown protein; AT3G01520, putative ethylene-resp	97.7
3ab8_A		268	Putative uncharacterized protein TTHA0350; tandem-	97.51
3cis_A		309	Uncharacterized protein; alpha/beta hydrolase, ATP	97.5
3zux_A		332	Transporter, ASBTNM; transport protein, membrane p	97.39
1q77_A		138	Hypothetical protein AQ_178; structural genomics,	97.33
3mt0_A		290	Uncharacterized protein PA1789; structural genomic	97.33
3olq_A		319	Universal stress protein E; structural genomics, P	97.23
3loq_A		294	Universal stress protein; structural genomics, PSI	97.22
3g40_A		294	Na-K-CL cotransporter; alpha/beta fold 10-stranded	96.31

>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A	Back alignment and structure

Probab=99.90  E-value=6.5e-24  Score=232.56  Aligned_cols=303  Identities=9%  Similarity=0.071  Sum_probs=216.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhccChhHH----hhhhh--hHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHH
Q 044119          133 LLVNTMSIMGGIYFIFIVTLKMDKARI----LKTVR--NGWSVSVTCLVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSV  206 (816)
Q Consensus       133 ~~l~~la~iGl~~llF~~Gle~d~~~l----~~~~~--~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~~~~l~lg~  206 (816)
                      +....+.+-.+.+|+|.+|+|+|.+.+    ++.+|  .....++.|+++|++++..    +....      ..+.....
T Consensus        58 ~l~~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy~~----~~~~~------~~~~~gw~  127 (388)
T 1zcd_A           58 NMLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYLA----FNYAD------PITREGWA  127 (388)
T ss_dssp             EHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHGG----GCCSS------TTHHHHTS
T ss_pred             cHHHHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHH----HhcCC------hhhhhhhH
Confidence            345667788899999999999999877    55555  3788899999999988422    21111      33556777


Q ss_pred             HhccCcHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044119          207 TLAKPFFPVIAHAMNELNL-LTSELGQLAISCSILSELLSWMNLILAMIFKANNHLLKTEITFCALAFFMFFIVRPAVKW  285 (816)
Q Consensus       207 ~ls~Ts~~vv~~iL~el~l-l~s~~g~l~ls~a~i~Di~~~vll~~~~~~~~~~~~l~~~l~~v~~~~~~~~v~r~~~~~  285 (816)
                      +.+.|+.+....++..++. .++..++.+++.|++||+.+|+++.+...  ++....+... .+++++..         +
T Consensus       128 ip~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt--~~~~~~~l~~-~~~~~~~~---------~  195 (388)
T 1zcd_A          128 IPAATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT--NDLSMASLGV-AAVAIAVL---------A  195 (388)
T ss_dssp             SSSCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC--CCCCHHHHHH-HHHHHHHH---------H
T ss_pred             HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc--CCccHHHHHH-HHHHHHHH---------H
Confidence            7888999999999999865 46667799999999999999999966533  2211212111 11111111         2


Q ss_pred             HHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHhhhccCCC----CchhHHHHHhHHHHHHHHHHHH-H
Q 044119          286 IIRTTPEGKAVKEIYMVAMLLLPGITGALSDATGLNFMSGAVLTGLVVPAGP----PLGSAVVKKSEIIMENIFMPFF-Y  360 (816)
Q Consensus       286 l~~r~~~~~~~~e~~~~~vl~~~~~~~~lae~lG~~~ilGaflaGL~i~~~~----~~~~~l~~kle~~~~~~~~Plf-F  360 (816)
                      +.+|..    +++...+.++.  +.+++.++..|+|+++|+|++|+++|..+    +..+++++++++++..+++|+| |
T Consensus       196 ~l~r~~----v~~~~~y~~lg--l~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~l~p~v~~~ilPlFaF  269 (388)
T 1zcd_A          196 VLNLCG----ARRTGVYILVG--VVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLILPLFAF  269 (388)
T ss_dssp             HHHHTT----CCCTHHHHHHH--HHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHhc----chhHHHHHHHH--HHHHHHHHHhCccHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            223321    11222333332  24456779999999999999999999853    3467899999999999999999 9


Q ss_pred             HHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHHHHhHHHHHHHHHHHH
Q 044119          361 IHIGQLFNVYSITNWKAFAILQIIILAAYFARVAAIFLSLIFY----------KISIRNAILFGLILNIKGVIELLLLTE  430 (816)
Q Consensus       361 ~~~G~~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~e~l~lgl~m~~kG~v~l~~~~~  430 (816)
                      +..|+++|...+..... .....+++..+++|++|++..++..          |++|+|...+|++++.+++++++++++
T Consensus       270 anaGv~l~~~~~~~l~~-~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigftmsL~Ia~l  348 (388)
T 1zcd_A          270 ANAGVSLQGVTLDGLTS-ILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTMSIFIASL  348 (388)
T ss_dssp             HHCCCCCSSSCCCTHHH-HSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCHHHHHHHHHH
T ss_pred             HhcCeeecccchhhccC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhccchHHHHHHHHH
Confidence            99999999754311111 1123444556889999966666666          999999999999999999999999999


Q ss_pred             hhhccc--cCcchhhHHHHHHHHHHHhHhHHHHhhc
Q 044119          431 WRTHKY--VDDQTVTTIMLSHTAVTAIVIPLISMYY  464 (816)
Q Consensus       431 ~~~~~~--i~~~~f~~lvl~vll~t~i~~pli~~ly  464 (816)
                      +++.+.  +.++.+..+++++++++.+.+.++++.+
T Consensus       349 af~~~~~~~~~~ak~~il~~s~~s~i~g~~~L~~~~  384 (388)
T 1zcd_A          349 AFGSVDPELINWAKLGILVGSISSAVIGYSWLRVRL  384 (388)
T ss_dssp             HSTTSSCSSHHHHHHHHHHHHHTTTSTTTGGGTTTC
T ss_pred             hccCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            998875  3566788888888885555555555544

PyMOL of 1zcd

>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}	Back alignment and structure

>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}	Back alignment and structure

>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}	Back alignment and structure

>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*	Back alignment and structure

>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*	Back alignment and structure

>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0	Back alignment and structure

>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0	Back alignment and structure

>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4	Back alignment and structure

>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0	Back alignment and structure

>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*	Back alignment and structure

>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}	Back alignment and structure

>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}	Back alignment and structure

>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}	Back alignment and structure

>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}	Back alignment and structure

>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0	Back alignment and structure

>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A	Back alignment and structure

>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*	Back alignment and structure

>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*	Back alignment and structure

>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4	Back alignment and structure

>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*	Back alignment and structure

>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*	Back alignment and structure

>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}	Back alignment and structure

>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A	Back alignment and structure

>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4	Back alignment and structure

>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4	Back alignment and structure

>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4	Back alignment and structure

>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4	Back alignment and structure

>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}	Back alignment and structure

>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4	Back alignment and structure

>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*	Back alignment and structure

>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4	Back alignment and structure

>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4	Back alignment and structure

>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*	Back alignment and structure

>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*	Back alignment and structure

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*	Back alignment and structure

>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4	Back alignment and structure

>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}	Back alignment and structure

>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}	Back alignment and structure

>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}	Back alignment and structure

>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		816
d2z3va1		135	Hypothetical protein TTHA0895 {Thermus thermophilu	98.54
d1mjha_		160	"Hypothetical" protein MJ0577 {Archaeon Methanococ	98.41
d1jmva_		140	Universal stress protein A, UspA {Haemophilus infl	98.37
d2gm3a1		171	Putative ethylene-responsive protein AT3g01520/F4P	98.24
d2z3va1		135	Hypothetical protein TTHA0895 {Thermus thermophilu	98.18
d1mjha_		160	"Hypothetical" protein MJ0577 {Archaeon Methanococ	98.09
d1q77a_		138	Hypothetical protein Aq_178 {Aquifex aeolicus [Tax	98.03
d1tq8a_		147	Hypothetical protein Rv1636 {Mycobacterium tubercu	98.02
d1jmva_		140	Universal stress protein A, UspA {Haemophilus infl	97.92
d1tq8a_		147	Hypothetical protein Rv1636 {Mycobacterium tubercu	97.9
d1q77a_		138	Hypothetical protein Aq_178 {Aquifex aeolicus [Tax	97.23
d2gm3a1		171	Putative ethylene-responsive protein AT3g01520/F4P	96.97

>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Hypothetical protein TTHA0895
species: Thermus thermophilus [TaxId: 274]

Probab=98.54  E-value=7.9e-08  Score=87.72  Aligned_cols=129  Identities=16%  Similarity=0.110  Sum_probs=85.7

Q ss_pred             EEEEeecCCCcHHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccchhhhh--cccccchhHHHHHHhcccccCc
Q 044119          494 RILCGIHHEDSIHNIINLLKALNPTEMSPICAYVVHLVELVGRAESLSAPYDAQRR--RLKENSTDRIMRAVTNQTKSSC  571 (816)
Q Consensus       494 riLv~v~~~~~v~~li~L~~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~--~~~~~~~~~i~~af~~~~~~~~  571 (816)
                      |||+|+..-++....++.+..++...  ..+++++|+++-+....    .+...++  .......++.++.+.. .  .+
T Consensus         3 ~Ilv~~D~s~~s~~a~~~a~~~a~~~--~~~l~ll~V~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~-~--~~   73 (135)
T d2z3va1           3 TILLAYDGSEHARRAAEVAKAEAEAH--GARLIVVHAYEPVPDYL----GEPFFEEALRRRLERAEGVLEEARA-L--TG   73 (135)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHHHHHH--TCEEEEEEEECCCCTTC----CTTHHHHHHHHHHHHHHHHHHHHHH-H--HC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHc--CCEEEEEEEecCCcccc----ccchhHHHHHHHHHHHHHHHHHHHH-h--cC
Confidence            79999998888888888888876543  46899999987433221    1111111  0111122233332222 1  12


Q ss_pred             cccceeeeEEecCCCChhHHHHHHHHhcCCCEEEEcCCCCCCcchhhhh-hHHHHHHHhhcCCCcEEE
Q 044119          572 VSLTSQPFKIIAPYHTMHESICKLAEDKFAPLILIPFHKGLEFQEIETC-LHQLNLNIQAYAQCTIGI  638 (816)
Q Consensus       572 v~~~v~~~~~vsp~~~m~~~I~~~A~e~~~~liilp~h~~~~~~~~~~~-~~~~n~~vl~~ApCsVgI  638 (816)
                      +.  .......+  .+..+.||+.|++.++|+|+||+|++....   +. +|++-+++++++||+|-|
T Consensus        74 ~~--~~~~~~~~--g~~~~~I~~~a~~~~~dliV~G~~~~~~~~---~~~~Gs~~~~ll~~~~~pVlv  134 (135)
T d2z3va1          74 VP--KEDALLLE--GVPAEAILQAARAEKADLIVMGTRGLGALG---SLFLGSQSQRVVAEAPCPVLL  134 (135)
T ss_dssp             CC--GGGEEEEE--SCHHHHHHHHHHHTTCSEEEEESSCSSSCB---CSSCBHHHHHHHHHCSSCEEE
T ss_pred             CC--eEEEEEEc--CChHHHHHHHhhhhheeeEEeccCCCCccc---ccccCcHHHHHHHhCCCCEEe
Confidence            33  33344444  688999999999999999999999877542   34 889999999999999843

PyMOL of d2z3va1

>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure