Citrus Sinensis ID: 044147

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------
Protein Sequence
MASSSTNLNAQSKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIETSDISIIIFSENYASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDVRKQMGSFGEAFVHHERNFPCEVRVQKWRDSLIQASNISGFLDSRSFRLWDHEDVYDVLTKNK
Secondary Structure (PSIPRED)
cccccccccccccccEEEcccccccccccHHHHHHHHHHccccEEcccccccccccccHHHHHHHHHccEEEEEEcccccccHHHHHHHHHHHHcccccccEEEEEEccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEEcccccHcHHHHHHHHHHHHHHHccccEEccccHccccccccHHHHHHHHHccEEEEEEEccccccHHHHHHHHHHHHHHHHcccEEEEEEEEccHHHHHHccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
massstnlnaqsKFDVFlsfrgedtrtgfTSHVVEALRRKQIQFfiddeelqrgeeisPALLSAIETSDISIIIFSenyasstwCLDELVRILdckkrngqivvpvfykvdpsdvrkqmgsfgeafvhhernfpcevRVQKWRDSLIQAsnisgfldsrsfrlwdhedVYDVLTKNK
Flexible Loop (DISEMBL)
massstnlnaqskFDVFLSFRGEDTRTGFTSHVVEALRRKQIQffiddeelqrGEEISPALLSAIETSDISIIIFSENYASSTWCLDELVRILDCkkrngqivvpvfykvdpsdVRKQMGSFGEAFVHHERNFPCEVRVQKWRDSLIQASNIsgfldsrsfrlwdhedvydvltknk
Low Complexity Region (SEG)
MASSSTNLNAQSKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIETSDISIIIFSENYASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDVRKQMGSFGEAFVHHERNFPCEVRVQKWRDSLIQASNISGFLDSRSFRLWDHEDVYDVLTKNK
Disordered region (IsUnstruct)
*************FDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIETSDISIIIFSENYASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDVRKQMGSFGEAFVHHERNFPCEVRVQKWRDSLIQASNISGFLDSRSFRLWDHEDVYDVL****
Disordered Region (DISOPRED)
***********SKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIETSDISIIIFSENYASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDVRKQMGSFGEAFVHHERN****VRVQKWRDSLIQASNISGFLDSRSFRLWDHEDVYDVLTKN*
Disordered Region (DISEMBL)
********NAQSKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIETSDISIIIFSENYASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDVRKQMGSFGEAFVHHERNFPCEVRVQKWRDSLIQASNISGFLDSRSFRLWDHEDVYDVLTKNK
Disordered Region (DISPRO)
*********AQSKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIETSDISIIIFSENYASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDVRKQMGSFGEAFVHHERNFPCEVRVQKWRDSLIQASNISGFLDSRSFRLWDHEDVYDVLTKNK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASSSTNLNAQSKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIETSDISIIIFSENYASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDVRKQMGSFGEAFVHHERNFPCEVRVQKWRDSLIQASNISGFLDSRSFRLWDHEDVYDVLTKNK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	177	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.824	0.127	0.523	1e-38
O82500	1095	Putative disease resistan	no	no	0.920	0.148	0.464	2e-34
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.881	0.119	0.443	2e-31
Q9FHE9	354	Protein PHLOEM PROTEIN 2-	no	no	0.864	0.432	0.378	5e-24
Q9SYC9	571	Vesicle-associated protei	no	no	0.977	0.302	0.367	1e-22
Q9C5Q9	411	Protein PHLOEM PROTEIN 2-	no	no	0.836	0.360	0.343	6e-21
Q9FHE8	392	Protein PHLOEM PROTEIN 2-	no	no	0.796	0.359	0.410	8e-21
Q9FL92	1372	Probable WRKY transcripti	no	no	0.570	0.073	0.366	1e-09

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  158 bits (400), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 77/147 (52%), Positives = 102/147 (69%), Gaps = 1/147 (0%)

Query: 14  FDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIETSDISII 73
           +DVFLSFRGEDTR  FTSH+ E L  K I+ F DD+ L+ G  I   L  AIE S  +I+
Sbjct: 12  YDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIV 71

Query: 74  IFSENYASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDVRKQMGSFGEAFVHHERNF 133
           +FSENYA+S WCL+ELV+I++CK R  Q V+P+FY VDPS VR Q  SF +AF  HE  +
Sbjct: 72  VFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKY 131

Query: 134 PCEVR-VQKWRDSLIQASNISGFLDSR 159
             +V  +Q+WR +L +A+N+ G  D+R
Sbjct: 132 KDDVEGIQRWRIALNEAANLKGSCDNR 158

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score =  144 bits (364), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 84/181 (46%), Positives = 109/181 (60%), Gaps = 18/181 (9%)

Query: 1   MASSSTNLNAQSKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPA 60
           MASSS+N     ++DVF SFRGED R  F SH+++    K I  F DD  ++R   I   
Sbjct: 1   MASSSSN---SWRYDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDDH-IKRSHTIGHE 56

Query: 61  LLSAIETSDISIIIFSENYASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDVRKQMG 120
           L +AI  S IS+++FSENYASS+WCLDEL+ I+ CK+  G  V+PVFYKVDPSD+RKQ G
Sbjct: 57  LRAAIRESKISVVLFSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQTG 116

Query: 121 SFGEAFVHHERNFPC----EVRVQKWRDSLIQASNISGFLDSRSFRLWDHEDVYDVLTKN 176
            FG +F+       C    E R   WR +L  A+NI G         WD+E  Y + T +
Sbjct: 117 KFGMSFLE-----TCCGKTEERQHNWRRALTDAANILGDHPQN----WDNE-AYKITTIS 166

Query: 177 K 177
           K
Sbjct: 167 K 167

Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score =  135 bits (340), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 74/167 (44%), Positives = 101/167 (60%), Gaps = 11/167 (6%)

Query: 1   MASSSTNLNAQSKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPA 60
           +ASSS       ++DVF SFRGED R  F SH+++ LR K I F   D+E++R   I P 
Sbjct: 3   IASSS----GSRRYDVFPSFRGEDVRDSFLSHLLKELRGKAITFI--DDEIERSRSIGPE 56

Query: 61  LLSAIETSDISIIIFSENYASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDVRKQMG 120
           LLSAI+ S I+I+IFS+NYASSTWCL+ELV I  C     Q+V+P+F+ VD S+V+KQ G
Sbjct: 57  LLSAIKESRIAIVIFSKNYASSTWCLNELVEIHKCYTNLNQMVIPIFFHVDASEVKKQTG 116

Query: 121 SFGEAFVHHERNFPCEVRVQKWRDSLIQASNISGFLDSRSFRLWDHE 167
            FG+ F         E   Q W+ +L   + ++G+      R W  E
Sbjct: 117 EFGKVF-EETCKAKSEDEKQSWKQALAAVAVMAGY----DLRKWPSE 158

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8 PE=2 SV=1

 Score =  110 bits (275), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 59/156 (37%), Positives = 90/156 (57%), Gaps = 3/156 (1%)

Query: 1   MASSSTNLNAQSKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPA 60
           MA+SS+     +   VF++FRG+D R GF S +  A+R   I  FID +E+   + ++  
Sbjct: 1   MAASSSVRPTPTGPQVFINFRGKDLRNGFLSFLEPAMREANINVFIDKDEVVGTDLVN-- 58

Query: 61  LLSAIETSDISIIIFSENYASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDVRKQMG 120
           L   I+ S ++++IFS++Y SS WCLDEL  I DC  + G   +P+FYK+ PS V +  G
Sbjct: 59  LFVRIQESRVAVVIFSKDYTSSEWCLDELAEIKDCINQGGLNAIPIFYKLAPSSVLELKG 118

Query: 121 SFGEAF-VHHERNFPCEVRVQKWRDSLIQASNISGF 155
            FG+ F V  E+      R QKW+++L     + G 
Sbjct: 119 GFGDTFRVLKEKYKNDPERTQKWQEALESIPKLKGL 154

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1

 Score =  105 bits (263), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/185 (36%), Positives = 111/185 (60%), Gaps = 12/185 (6%)

Query: 2   ASSSTNLNAQS--KFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISP 59
           A+SST+ +  +  ++ VF++FRG++ R  F   +V+A+R ++I  F D+ EL RG  ++ 
Sbjct: 344 AASSTDDHGITLPQYQVFINFRGDELRNSFVGFLVKAMRLEKINVFTDEVEL-RGTNLN- 401

Query: 60  ALLSAIETSDISIIIFSENYASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDVRKQM 119
            L   IE S +++ IFSE Y  S WCLDELV++ +  ++   +VVPVFY+++ +  ++ M
Sbjct: 402 YLFRRIEESRVAVAIFSERYTESCWCLDELVKMKEQMEQGKLVVVPVFYRLNATACKRFM 461

Query: 120 GSFGEAFVHHERNFPCEV-RVQKWRDSLIQA-SNISGFLDSRSFRL----WDH--EDVYD 171
           G+FG+   + E  +  E  R+QKW+++L    SNI    D R + L     DH  E +Y 
Sbjct: 462 GAFGDNLRNLEWEYRSEPERIQKWKEALSSVFSNIGLTSDIRRYNLINKNMDHTSEFLYI 521

Query: 172 VLTKN 176
           VL  N
Sbjct: 522 VLILN 526

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5 PE=2 SV=1

 Score =  100 bits (248), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 91/157 (57%), Gaps = 9/157 (5%)

Query: 16  VFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIETSDISIIIF 75
           VF++FRG+D R GF S +  AL++++I  FID++E +RG+ +  +L   I  S I+++IF
Sbjct: 24  VFINFRGKDLRKGFMSFLKPALKKEKINVFIDEQE-ERGKYLI-SLFDTIGESKIALVIF 81

Query: 76  SENYASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDVRKQMGSFGEAFVHHERNF-P 134
           SE Y  S WC+DELV+I +   +N  I++P+FY++D   V+   G FG+ F      + P
Sbjct: 82  SEGYCESHWCMDELVKIKEYMDQNRLIIIPIFYRLDLDVVKDLTGKFGDNFWDLVDKYQP 141

Query: 135 CEVRVQKWRDSLIQASNISGFLDSRSFRLWDHEDVYD 171
              ++ KW ++L     +   +  +      H D+ D
Sbjct: 142 EPKKLHKWTEALFSVCELFSLILPK------HSDISD 172

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE8|P2A06_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6 PE=2 SV=1

 Score = 99.8 bits (247), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 62/151 (41%), Positives = 89/151 (58%), Gaps = 10/151 (6%)

Query: 1   MASSSTNLNA-QSKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISP 59
           MASSS+ +    +   VF+ FRG D R  F S +V ALR   I  FID+ E   G E++ 
Sbjct: 1   MASSSSVVKPTPTGPQVFICFRGADVRKHFISFLVPALREANINVFIDENEF-LGSEMA- 58

Query: 60  ALLSAIETSDISIIIFSENYASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDVRKQM 119
            LL+ IE S+++++IFS ++  S  CL+EL +I + K +   IV+P+FYKV PS V+   
Sbjct: 59  NLLTRIEESELALVIFSVDFTRSHRCLNELAKIKERKDQGRLIVIPIFYKVKPSAVKFLE 118

Query: 120 GSFGEAFVHHERN----FPCEVRVQKWRDSL 146
           G FG+ F   ERN     P     QKW+++L
Sbjct: 119 GKFGDNFRALERNNRHMLPI---TQKWKEAL 146

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 62/112 (55%), Gaps = 11/112 (9%)

Query: 23  EDTRTGFTSHVVEALRRKQIQ-FFIDDEELQRGEEISPALLSAIETSDISIIIFSENYAS 81
           E+ R  F SH+ +AL+RK +   FID ++      +S    S +E + +S++I   N   
Sbjct: 14  EEVRYSFVSHLSKALQRKGVNDVFIDSDD-----SLSNESQSMVERARVSVMILPGNRTV 68

Query: 82  STWCLDELVRILDCKKRNGQIVVPVFYKVDPSDVR--KQMGSFGEAFVHHER 131
           S   LD+LV++LDC+K   Q+VVPV Y V  S+      + S G + VHH R
Sbjct: 69  S---LDKLVKVLDCQKNKDQVVVPVLYGVRSSETEWLSALDSKGFSSVHHSR 117

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
124360568	1208	TIR [Medicago truncatula]	0.892	0.130	0.591	1e-49
357449443	1179	TMV resistance protein N [Medicago trunc	0.954	0.143	0.567	5e-49
147780473	435	hypothetical protein VITISV_034310 [Viti	0.824	0.335	0.628	6e-47
356569977	833	PREDICTED: TMV resistance protein N-like	0.875	0.186	0.567	1e-46
124359513	1230	TIR [Medicago truncatula]	0.977	0.140	0.547	2e-46
357449525	1128	TMV resistance protein N [Medicago trunc	0.977	0.153	0.547	2e-46
359496026	1250	PREDICTED: TMV resistance protein N-like	0.830	0.117	0.613	3e-46
307135797	556	TIR-NBS-LRR disease resistance protein [	0.858	0.273	0.574	3e-46
255564976	944	TMV resistance protein N, putative [Rici	0.937	0.175	0.582	6e-46
105923218	1617	TIR-NBS-LRR type disease resistance prot	0.830	0.090	0.624	8e-46

>gi|124360568|gb|ABD33387.2| TIR [Medicago truncatula]

 Score =  201 bits (510), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 97/164 (59%), Positives = 131/164 (79%), Gaps = 6/164 (3%)

Query: 2   ASSSTNLN-AQSKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPA 60
           ASSS+ L  A + FDVF+SFRG+DTR  FTSH+ EAL++  ++ FIDD EL++G+EIS A
Sbjct: 111 ASSSSTLEVASNSFDVFISFRGDDTRRKFTSHLNEALKKSGVKTFIDDSELKKGDEISSA 170

Query: 61  LLSAIETSDISIIIFSENYASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDVRKQMG 120
           L+ AIE S  SI+IFSE+YASS WCL+ELV+IL+CKK NGQIV+P+FY++DPS VR Q+G
Sbjct: 171 LIKAIEESCASIVIFSEDYASSKWCLNELVKILECKKDNGQIVIPIFYEIDPSHVRNQIG 230

Query: 121 SFGEAFVHHERNFPCEVRVQKWRDSLIQASNISGFLDSRSFRLW 164
           S+G+AF  HE+N    ++ QKW+D+L + SN+SG+ DS+S R W
Sbjct: 231 SYGQAFAKHEKN----LKQQKWKDALTEVSNLSGW-DSKSSRWW 269

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357449443|ref|XP_003594998.1| TMV resistance protein N [Medicago truncatula] gi|355484046|gb|AES65249.1| TMV resistance protein N [Medicago truncatula]

 Score =  198 bits (504), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 101/178 (56%), Positives = 138/178 (77%), Gaps = 9/178 (5%)

Query: 2   ASSSTNLN-AQSKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPA 60
           ASSS+ L  A + FDVF+SFRG+DTR  FTSH+ EAL++  ++ FIDD EL++G+EIS A
Sbjct: 111 ASSSSTLEVASNSFDVFISFRGDDTRRKFTSHLNEALKKSGVKTFIDDSELKKGDEISSA 170

Query: 61  LLSAIETSDISIIIFSENYASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDVRKQMG 120
           L+ AIE S  SI+IFSE+YASS WCL+ELV+IL+CKK NGQIV+P+FY++DPS VR Q+G
Sbjct: 171 LIKAIEESCASIVIFSEDYASSKWCLNELVKILECKKDNGQIVIPIFYEIDPSHVRNQIG 230

Query: 121 SFGEAFVHHERNFPCEVRVQKWRDSLIQASNISGFLDSRSFRL---WDHEDVYDVLTK 175
           S+G+AF  HE+N    ++ QKW+D+L + SN+SG+ DS+S R+   +  + V DVL K
Sbjct: 231 SYGQAFAKHEKN----LKQQKWKDALTEVSNLSGW-DSKSSRIESDFIKDIVKDVLEK 283

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147780473|emb|CAN66817.1| hypothetical protein VITISV_034310 [Vitis vinifera]

 Score =  192 bits (487), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 93/148 (62%), Positives = 115/148 (77%), Gaps = 2/148 (1%)

Query: 14  FDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIETSDISII 73
           +DVFLSFRGEDTR  FT+H+ + LR K I  FIDD++L RG+ ISPAL++AIE S  SII
Sbjct: 110 YDVFLSFRGEDTRNNFTAHLYKELRTKGINTFIDDDKLDRGQVISPALVAAIENSMFSII 169

Query: 74  IFSENYASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDVRKQMGSFGEAFVHHERNF 133
           + SENYASS WCL+ELV+IL+CK+  GQ V+P+FY VDPSDVRK MG FGEA   HE NF
Sbjct: 170 VLSENYASSRWCLEELVKILECKESRGQRVLPIFYNVDPSDVRKHMGKFGEALAKHEENF 229

Query: 134 PCEV-RVQKWRDSLIQASNISGFLDSRS 160
              + RVQ WRD+L Q +N+SG+ DSR+
Sbjct: 230 KENMGRVQIWRDALTQVANLSGW-DSRN 256

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569977|ref|XP_003553169.1| PREDICTED: TMV resistance protein N-like [Glycine max]

 Score =  191 bits (484), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 92/162 (56%), Positives = 127/162 (78%), Gaps = 7/162 (4%)

Query: 13  KFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIETSDISI 72
           K+DVFLSFRGEDTR  FTSH+ EAL++K+++ +ID E L++G+EISPAL+ AIE S +SI
Sbjct: 19  KYDVFLSFRGEDTRRNFTSHLYEALKQKKVETYID-EHLEKGDEISPALIKAIEDSHVSI 77

Query: 73  IIFSENYASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDVRKQMGSFGEAFVHHERN 132
           ++FS+NYASS WCL EL++ILDCKK  GQIV+PVFY++DPSDVRKQ GS+ +AF  HE  
Sbjct: 78  VVFSKNYASSKWCLVELIKILDCKKDRGQIVIPVFYEIDPSDVRKQTGSYEQAFAKHEGE 137

Query: 133 FPCEVRVQKWRDSLIQASNISGFLDSRSFRLWDHEDVYDVLT 174
             C     KW+ +L +A+N++G+ DSR++R  D E + D++ 
Sbjct: 138 PSC----NKWKTALTEAANLAGW-DSRTYRT-DPELLKDIVA 173

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|124359513|gb|ABN05946.1| TIR [Medicago truncatula]

 Score =  190 bits (482), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 98/179 (54%), Positives = 136/179 (75%), Gaps = 6/179 (3%)

Query: 2   ASSSTNLN-AQSKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPA 60
           ASSS+ L  A + FDVF+SFRG+DTR  FTSH+ EAL++  ++ FIDD EL++G+EIS A
Sbjct: 111 ASSSSTLEVASNSFDVFISFRGDDTRRKFTSHLNEALKKSGLKTFIDDNELKKGDEISSA 170

Query: 61  LLSAIETSDISIIIFSENYASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDVRKQMG 120
           L+ AIE S  SI+I SENYASS WCL+ELV+IL+CKK NGQIV+P+FY++DPS VR Q+G
Sbjct: 171 LIKAIEESCASIVILSENYASSKWCLNELVKILECKKDNGQIVIPIFYEIDPSHVRYQIG 230

Query: 121 SFGEAFVHHERNFPCEV-RVQKWRDSLIQASNISGFLDSRSFRL---WDHEDVYDVLTK 175
           S+G+AF  +E+N   +   +QKW+D+L + S +SG+ DS++ R+   +  + V DVL K
Sbjct: 231 SYGQAFAKYEKNLRHKKDNLQKWKDALTEVSKLSGW-DSKNSRIESDFIKDIVKDVLEK 288

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357449525|ref|XP_003595039.1| TMV resistance protein N [Medicago truncatula] gi|355484087|gb|AES65290.1| TMV resistance protein N [Medicago truncatula]

 Score =  190 bits (482), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 98/179 (54%), Positives = 136/179 (75%), Gaps = 6/179 (3%)

Query: 2   ASSSTNLN-AQSKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPA 60
           ASSS+ L  A + FDVF+SFRG+DTR  FTSH+ EAL++  ++ FIDD EL++G+EIS A
Sbjct: 9   ASSSSTLEVASNSFDVFISFRGDDTRRKFTSHLNEALKKSGLKTFIDDNELKKGDEISSA 68

Query: 61  LLSAIETSDISIIIFSENYASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDVRKQMG 120
           L+ AIE S  SI+I SENYASS WCL+ELV+IL+CKK NGQIV+P+FY++DPS VR Q+G
Sbjct: 69  LIKAIEESCASIVILSENYASSKWCLNELVKILECKKDNGQIVIPIFYEIDPSHVRYQIG 128

Query: 121 SFGEAFVHHERNFPCEV-RVQKWRDSLIQASNISGFLDSRSFRL---WDHEDVYDVLTK 175
           S+G+AF  +E+N   +   +QKW+D+L + S +SG+ DS++ R+   +  + V DVL K
Sbjct: 129 SYGQAFAKYEKNLRHKKDNLQKWKDALTEVSKLSGW-DSKNSRIESDFIKDIVKDVLEK 186

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496026|ref|XP_002277166.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  189 bits (481), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 92/150 (61%), Positives = 115/150 (76%), Gaps = 3/150 (2%)

Query: 11  QSKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIETSDI 70
           Q  ++VFLSFRGEDTR GFT+H+ +ALRR+ I  FIDD +L+RG  ISPAL+ AIE S  
Sbjct: 19  QKSYEVFLSFRGEDTRHGFTAHLYDALRRRGINTFIDDADLKRGRVISPALVQAIENSMF 78

Query: 71  SIIIFSENYASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDVRKQMGSFGEAFVHHE 130
           SI++ SENYASS WCL+ELV+IL+C       V P+FYKVDPSDVRKQ GSFGEAFV HE
Sbjct: 79  SIVVLSENYASSRWCLEELVKILECMNAGSLTVFPIFYKVDPSDVRKQKGSFGEAFVEHE 138

Query: 131 RNFPCEVRVQKWRDSLIQASNISGFLDSRS 160
           +N     RV+ WR++L Q +N+SG+ DSR+
Sbjct: 139 KN--SNERVKTWREALTQVANLSGW-DSRN 165

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307135797|gb|ADN33676.1| TIR-NBS-LRR disease resistance protein [Cucumis melo subsp. melo]

 Score =  189 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 89/155 (57%), Positives = 121/155 (78%), Gaps = 3/155 (1%)

Query: 1   MASSSTNLNAQSKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPA 60
           M SS+ +   +  +DVFLSFRGEDTRT FTSH+  ALR+K +  FIDD+ L+RGE+IS +
Sbjct: 1   MDSSTESSTFKWSYDVFLSFRGEDTRTNFTSHLDMALRQKGVNVFIDDK-LERGEQISES 59

Query: 61  LLSAIETSDISIIIFSENYASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDVRKQMG 120
           L  +I+ + ISI+IFS+NYASS+WCLDELV+I++CKK  GQIV+P+FYKVDPSD+RKQ G
Sbjct: 60  LFKSIQEALISIVIFSQNYASSSWCLDELVKIIECKKSKGQIVLPIFYKVDPSDIRKQSG 119

Query: 121 SFGEAFVHHERNFPCEVRVQKWRDSLIQASNISGF 155
           +FGEA   H+  F  + + Q WR++L  A+N+SG+
Sbjct: 120 TFGEALAKHQAKF--QTKTQIWREALTTAANLSGW 152

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564976|ref|XP_002523481.1| TMV resistance protein N, putative [Ricinus communis] gi|223537309|gb|EEF38940.1| TMV resistance protein N, putative [Ricinus communis]

 Score =  188 bits (478), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 99/170 (58%), Positives = 124/170 (72%), Gaps = 4/170 (2%)

Query: 9   NAQSKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIETS 68
           + Q K+DVF+SFRGEDTR  FTSH+  AL +KQI+ F+DD+ L RGEEIS AL+  IE S
Sbjct: 11  DPQLKYDVFVSFRGEDTRDNFTSHLYAALHQKQIKAFVDDK-LSRGEEISAALVKVIEES 69

Query: 69  DISIIIFSENYASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDVRKQMGSFGEAFVH 128
            +S+IIFSENYA S WCLDELV+IL+CKK  GQIV+PVFY VDPSDV +Q G FG AF+ 
Sbjct: 70  MVSVIIFSENYAFSPWCLDELVKILECKKTVGQIVLPVFYHVDPSDVAEQKGGFGAAFIE 129

Query: 129 HERNFPCEV-RVQKWRDSLIQASNISGFLDS--RSFRLWDHEDVYDVLTK 175
           HE+ F   + ++QKWR +L +A+NISG+  S  RS      E   D+L K
Sbjct: 130 HEKCFKERIDKLQKWRAALTEAANISGWSSSVIRSESKLIQEIAEDILKK 179

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|105923218|gb|ABF81464.1| TIR-NBS-LRR type disease resistance protein [Populus trichocarpa]

 Score =  188 bits (477), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 93/149 (62%), Positives = 114/149 (76%), Gaps = 2/149 (1%)

Query: 14  FDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIETSDISII 73
           +DVFLSFRGEDTR  FT H+  AL   +I  F DD+EL+RGEEIS  LL AI+ S ISI+
Sbjct: 256 YDVFLSFRGEDTRKNFTDHLYTALHHARIHAFRDDDELRRGEEISLQLLKAIQESKISIV 315

Query: 74  IFSENYASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDVRKQMGSFGEAFVHHERNF 133
           +FS+ YASSTWCL EL +ILDC+   GQIV+PVFY +DPSD+RKQ GSF EAF  HE  F
Sbjct: 316 VFSKGYASSTWCLAELEKILDCRHTTGQIVLPVFYDIDPSDIRKQTGSFAEAFDRHEERF 375

Query: 134 PCEV-RVQKWRDSLIQASNISGFLDSRSF 161
             E+ +VQKWR +L++A+N+SG LD RSF
Sbjct: 376 KEEMEKVQKWRKALMEAANLSG-LDLRSF 403

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
UNIPROTKB|Q40392	1144	N "TMV resistance protein N" [	0.887	0.137	0.512	2.8e-37
TAIR|locus:2167457	1191	AT5G36930 [Arabidopsis thalian	0.870	0.129	0.480	5.2e-36
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.853	0.123	0.512	7.4e-36
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.926	0.126	0.451	1.5e-33
TAIR|locus:2151491	1123	AT5G46450 [Arabidopsis thalian	0.858	0.135	0.503	5e-33
TAIR|locus:1006230150	313	AT2G20142 [Arabidopsis thalian	0.813	0.460	0.496	5.2e-33
TAIR|locus:2136108	1095	AT4G11170 [Arabidopsis thalian	0.943	0.152	0.474	1e-32
TAIR|locus:2146253	1210	AT5G18370 [Arabidopsis thalian	0.932	0.136	0.479	1.2e-32
TAIR|locus:2024588	997	RLM1 "RESISTANCE TO LEPTOSPHAE	0.909	0.161	0.491	1.8e-32
TAIR|locus:2195468	1017	AT1G63880 [Arabidopsis thalian	0.920	0.160	0.491	1.9e-32

UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]

 Score = 406 (148.0 bits), Expect = 2.8e-37, Sum P(2) = 2.8e-37
 Identities = 82/160 (51%), Positives = 111/160 (69%)

Query:     1 MASSSTNLNAQSKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPA 60
             MASSS++  ++  +DVFLSFRGEDTR  FTSH+ E L  K I+ F DD+ L+ G  I   
Sbjct:     1 MASSSSS--SRWSYDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGE 58

Query:    61 LLSAIETSDISIIIFSENYASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDVRKQMG 120
             L  AIE S  +I++FSENYA+S WCL+ELV+I++CK R  Q V+P+FY VDPS VR Q  
Sbjct:    59 LCKAIEESQFAIVVFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKE 118

Query:   121 SFGEAFVHHERNFPCEVR-VQKWRDSLIQASNISGFLDSR 159
             SF +AF  HE  +  +V  +Q+WR +L +A+N+ G  D+R
Sbjct:   119 SFAKAFEEHETKYKDDVEGIQRWRIALNEAANLKGSCDNR 158

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2167457 AT5G36930 [Arabidopsis thaliana (taxid:3702)]

 Score = 381 (139.2 bits), Expect = 5.2e-36, Sum P(2) = 5.2e-36
 Identities = 75/156 (48%), Positives = 106/156 (67%)

Query:     1 MASSSTNLNAQSKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPA 60
             MA     +  +  +DVF+SFRG D R  F SH+ ++LRR  I  F+DD ELQRGE ISP 
Sbjct:     4 MAQGRERIPERWTYDVFVSFRGADVRKNFLSHLYDSLRRCGISTFMDDVELQRGEYISPE 63

Query:    61 LLSAIETSDISIIIFSENYASSTWCLDELVRILDCKKRN-GQIVVPVFYKVDPSDVRKQM 119
             LL+AIETS I I++ +++YASS WCLDELV I+   K N   +V P+F  VDPSD+R Q 
Sbjct:    64 LLNAIETSKILIVVLTKDYASSAWCLDELVHIMKSHKNNPSHMVFPIFLYVDPSDIRWQQ 123

Query:   120 GSFGEAFVHHERNFPCEVRVQKWRDSLIQASNISGF 155
             GS+ ++F  H+ + P   +++ WR++L + +NISG+
Sbjct:   124 GSYAKSFSKHKNSHPLN-KLKDWREALTKVANISGW 158

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 374 (136.7 bits), Expect = 7.4e-36, Sum P(2) = 7.4e-36
 Identities = 81/158 (51%), Positives = 104/158 (65%)

Query:     1 MASSSTNLNAQSKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPA 60
             M SSS +    ++FDVFLSFRG DTR  FT H+ +ALR + I  FIDD  L+RG+ ++ A
Sbjct:     1 MESSSPS---SAEFDVFLSFRGFDTRNNFTGHLQKALRLRGIDSFIDDR-LRRGDNLT-A 55

Query:    61 LLSAIETSDISIIIFSENYASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDVRKQMG 120
             L   IE S I+II+FS NYA+S WCL ELV+IL+C+  N Q+VVP+FYKVD SDV KQ  
Sbjct:    56 LFDRIEKSKIAIIVFSTNYANSAWCLRELVKILECRNSNQQLVVPIFYKVDKSDVEKQRN 115

Query:   121 SFGEAFVHHERNFP--CEVRVQKWRDSLIQASNISGFL 156
             SF   F   E  FP      +  W+ +L  ASNI G++
Sbjct:   116 SFAVPFKLPELTFPGVTPEEISSWKAALASASNILGYV 153

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 364 (133.2 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
 Identities = 79/175 (45%), Positives = 114/175 (65%)

Query:     2 ASSSTNLNAQSKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPAL 61
             +SSS++ +   K DVF+SFRGED R  F SH+     R  I+ F DD +LQRG+ ISP L
Sbjct:     6 SSSSSSSSTVWKTDVFVSFRGEDVRKTFVSHLFCEFDRMGIKAFRDDLDLQRGKSISPEL 65

Query:    62 LSAIETSDISIIIFSENYASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDVRKQMGS 121
             + AI+ S  +I++ S NYA+S+WCLDEL++I++C K     +VP+FY+VDPSDVR+Q GS
Sbjct:    66 IDAIKGSRFAIVVVSRNYAASSWCLDELLKIMECNK---DTIVPIFYEVDPSDVRRQRGS 122

Query:   122 FGEAFVHHERNFPCEVRVQKWRDSLIQASNISGFLDSRSFRLWDHEDVYDVLTKN 176
             FGE    H      + +V KW+++L + + ISG  DSR+   WD   +   + K+
Sbjct:   123 FGEDVESHSD----KEKVGKWKEALKKLAAISGE-DSRN---WDDSKLIKKIVKD 169

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2151491 AT5G46450 [Arabidopsis thaliana (taxid:3702)]

 Score = 363 (132.8 bits), Expect = 5.0e-33, Sum P(2) = 5.0e-33
 Identities = 78/155 (50%), Positives = 104/155 (67%)

Query:     1 MASSSTNLNAQSKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPA 60
             MASSS++    S +DVF SF GED R  F SH +  L RK I  F  D E++R + I+P 
Sbjct:     1 MASSSSSSRNWS-YDVFPSFSGEDVRKTFLSHFLRELERKSIITF-KDNEMERSQSIAPE 58

Query:    61 LLSAIETSDISIIIFSENYASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDVRKQMG 120
             L+ AI+ S I++I+FS+NYASS+WCL+EL+ I+ C K  GQ V+PVFY +DPS +RKQ G
Sbjct:    59 LVEAIKDSRIAVIVFSKNYASSSWCLNELLEIMRCNKYLGQQVIPVFYYLDPSHLRKQSG 118

Query:   121 SFGEAFVHHERNFPCEVRVQKWRDSLIQASNISGF 155
              FGEAF    +N   EV+ Q W+ +L   SNI G+
Sbjct:   119 EFGEAFKKTCQNQTEEVKNQ-WKQALTDVSNILGY 152

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:1006230150 AT2G20142 [Arabidopsis thaliana (taxid:3702)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 74/149 (49%), Positives = 100/149 (67%)

Query:     7 NLNAQSKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIE 66
             N + + K DVF+SFR +DTR  F SH+   LRRK+I+ F+ DE L   E    +L  AIE
Sbjct:     2 NSSPKMKHDVFISFRSKDTRDNFVSHLCGCLRRKRIKTFLYDE-LPADERYEESL-KAIE 59

Query:    67 TSDISIIIFSENYASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDVRKQMGSFGEAF 126
              S IS+I+FSEN+  S WCLDE+V IL CK++ GQIV+PV Y VDP D+  Q GSFG+AF
Sbjct:    60 VSKISVIVFSENFGDSRWCLDEVVAILKCKEKFGQIVIPVLYHVDPLDIENQTGSFGDAF 119

Query:   127 VHHERNFPCEVRVQKWRDSLIQASNISGF 155
                +R    E ++Q+W+DS  +A N+ G+
Sbjct:   120 A--KRRDKAE-QLQEWKDSFTEAINLPGW 145

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007165 "signal transduction" evidence=IEA

TAIR|locus:2136108 AT4G11170 [Arabidopsis thaliana (taxid:3702)]

 Score = 369 (135.0 bits), Expect = 1.0e-32, P = 1.0e-32
 Identities = 84/177 (47%), Positives = 110/177 (62%)

Query:     1 MASSSTNLNAQSKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPA 60
             MASSS+N     ++DVF SFRGED R  F SH+++    K I  F DD  ++R   I   
Sbjct:     1 MASSSSN---SWRYDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDDH-IKRSHTIGHE 56

Query:    61 LLSAIETSDISIIIFSENYASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDVRKQMG 120
             L +AI  S IS+++FSENYASS+WCLDEL+ I+ CK+  G  V+PVFYKVDPSD+RKQ G
Sbjct:    57 LRAAIRESKISVVLFSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQTG 116

Query:   121 SFGEAFVHHERNFPCEVRVQKWRDSLIQASNISGFLDSRSFRLWDHEDVYDVLTKNK 177
              FG +F+        E R   WR +L  A+NI G  D    + WD+E  Y + T +K
Sbjct:   117 KFGMSFLETCCG-KTEERQHNWRRALTDAANILG--DHP--QNWDNE-AYKITTISK 167

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0010193 "response to ozone" evidence=IEP

TAIR|locus:2146253 AT5G18370 [Arabidopsis thaliana (taxid:3702)]

 Score = 369 (135.0 bits), Expect = 1.2e-32, P = 1.2e-32
 Identities = 83/173 (47%), Positives = 111/173 (64%)

Query:     3 SSSTNLNAQSKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALL 62
             S S+ ++      VF SFRGED R GF SH+ +  + K I  FIDDE ++RGE I P L 
Sbjct:    50 SLSSPISRTWTHQVFPSFRGEDVRKGFLSHIQKEFKSKGIVPFIDDE-MKRGESIGPGLF 108

Query:    63 SAIETSDISIIIFSENYASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDVRKQMGSF 122
              AI  S I+I++ S+NYASS+WCL+ELV I++C++  GQ V+ VFY+VDPSDVRKQ G F
Sbjct:   109 QAIRESKIAIVLLSKNYASSSWCLNELVEIMNCREEIGQTVMTVFYQVDPSDVRKQTGDF 168

Query:   123 GEAFVHHERNFPCEVRVQKWRDSLIQASNISGFLDSRSFRLWDHEDVYDVLTK 175
             G+AF         EV+ Q+W  +L+  +NI G  DSR    WD E   D++ K
Sbjct:   169 GKAFKKTCVGKTQEVK-QRWSRALMDVANILG-QDSRK---WDKEA--DMIVK 214

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2024588 RLM1 "RESISTANCE TO LEPTOSPHAERIA MACULANS 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 82/167 (49%), Positives = 99/167 (59%)

Query:     1 MASSSTNLNAQSKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPA 60
             MASSS++ +   ++ VF SF G D RT F SH  +      I  F DD+ + RGE ISPA
Sbjct:     1 MASSSSSASRTWRYRVFTSFHGSDVRTSFLSHFRKQFNNNGITMF-DDQRILRGETISPA 59

Query:    61 LLSAIETSDISIIIFSENYASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDVRKQMG 120
             L  AI  S ISI++ S+NYASS WCLDEL+ IL CK   GQIV+ VFY VDPSDVRKQ G
Sbjct:    60 LTQAIRESRISIVLLSKNYASSGWCLDELLEILKCKDDMGQIVMTVFYGVDPSDVRKQTG 119

Query:   121 SFGEAFVHHERNFPCEVRVQKWRDSLIQASNISGFLDSRSFRLWDHE 167
              FG AF     N  C  R ++ R    QA N  G +       WD+E
Sbjct:   120 EFGIAF-----NETCACRTEEERQKWSQALNYVGNIAGEHLLNWDNE 161

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0050832 "defense response to fungus" evidence=IMP

TAIR|locus:2195468 AT1G63880 [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 1.9e-32, P = 1.9e-32
 Identities = 83/169 (49%), Positives = 104/169 (61%)

Query:     1 MASSSTNLNAQSKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPA 60
             MAS S+  +   KF+VF SF G D R    SH+     R  I  F DD+++ R   I P+
Sbjct:     1 MASPSSFSSQNYKFNVFASFHGPDVRKTLLSHIRLQFNRNGITMF-DDQKIVRSATIGPS 59

Query:    61 LLSAIETSDISIIIFSENYASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDVRKQMG 120
             L+ AI+ S ISI+I S+ YASS+WCLDELV IL+CKK  GQIV+ +FY VDPSDVRKQ+G
Sbjct:    60 LVEAIKESRISIVILSKKYASSSWCLDELVEILECKKAMGQIVMTIFYGVDPSDVRKQIG 119

Query:   121 SFGEAFVHHERNFPCEVRVQKWRDSLIQASNISGFLDSRSFRLWDHEDV 169
              FG AF         E R QKW  +L Q SNI+G      F  WD+E +
Sbjct:   120 KFGIAFNETCARKTEEER-QKWSKALNQVSNIAG----EDFLRWDNEAI 163

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0050832 "defense response to fungus" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00021865001 SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence; (1160 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	177
pfam01582	135	pfam01582, TIR, TIR domain	9e-46
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-45
smart00255	140	smart00255, TIR, Toll - interleukin 1 - resistance	9e-44
PLN03194	187	PLN03194, PLN03194, putative disease resistance pr	5e-14
pfam13676	102	pfam13676, TIR_2, TIR domain	8e-12

>gnl|CDD|216585 pfam01582, TIR, TIR domain

 Score =  146 bits (371), Expect = 9e-46
 Identities = 61/131 (46%), Positives = 84/131 (64%), Gaps = 3/131 (2%)

Query: 16  VFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIETSDISIIIF 75
           VF+SF G+D R  F SH+++ L  K I+  IDD +   GE I   L  AIE S  +I+IF
Sbjct: 1   VFVSFSGKDDRDTFVSHLLKELEEKGIKLCIDDRDELPGESILENLFEAIEKSRRAIVIF 60

Query: 76  SENYASSTWCLDELVRILDCKK--RNGQIVVPVFYKVDPSDVRKQMGSFGEAFV-HHERN 132
           S NYASS WCLDELV I+ C       ++++P+FYKVDPSDVR Q G FG+AF+   + +
Sbjct: 61  SSNYASSEWCLDELVEIVKCALEGGGKKVILPIFYKVDPSDVRPQSGKFGKAFLKTLKWS 120

Query: 133 FPCEVRVQKWR 143
              E +++ W+
Sbjct: 121 GDKEDKIRFWK 131

The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades. Length = 135

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  158 bits (402), Expect = 2e-45
 Identities = 72/155 (46%), Positives = 103/155 (66%), Gaps = 4/155 (2%)

Query: 1   MASSSTNLNAQSKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPA 60
            +SSS++ N    +DVF SF GED R  F SH ++ L RK I  F  D E++R + + P 
Sbjct: 2   ASSSSSSRNWV--YDVFPSFSGEDVRITFLSHFLKELDRKLIIAF-KDNEIERSQSLDPE 58

Query: 61  LLSAIETSDISIIIFSENYASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDVRKQMG 120
           L  AI  S I++++FS+NYASS+WCL+EL+ I+ CK+  GQ+V+PVFY +DPS VRKQ G
Sbjct: 59  LKQAIRDSRIAVVVFSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTG 118

Query: 121 SFGEAFVHHERNFPCEVRVQKWRDSLIQASNISGF 155
            FGEAF    +N   + ++Q W+ +L   +NI G+
Sbjct: 119 DFGEAFEKTCQNKTEDEKIQ-WKQALTDVANILGY 152

syringae 6; Provisional. Length = 1153

>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance

 Score =  141 bits (358), Expect = 9e-44
 Identities = 59/142 (41%), Positives = 82/142 (57%), Gaps = 4/142 (2%)

Query: 13  KFDVFLSFRG-EDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIETSDIS 71
           ++DVF+S+ G ED R  F SH++E LR   +  FIDD E   G      +  AIE S I+
Sbjct: 1   EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEP--GGGDLEEIDEAIEKSRIA 58

Query: 72  IIIFSENYASSTWCLDELVRILDCKKR-NGQIVVPVFYKVDPSDVRKQMGSFGEAFVHHE 130
           I++ S NYA S WCLDELV  L+      G  V+P+FY+V PSDVRKQ G F + F  + 
Sbjct: 59  IVVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVFKKNY 118

Query: 131 RNFPCEVRVQKWRDSLIQASNI 152
             +P + + Q W+ +L    + 
Sbjct: 119 LKWPEDEKEQFWKKALYAVPSK 140

Length = 140

>gnl|CDD|215626 PLN03194, PLN03194, putative disease resistance protein; Provisional

 Score = 66.4 bits (162), Expect = 5e-14
 Identities = 34/108 (31%), Positives = 62/108 (57%), Gaps = 4/108 (3%)

Query: 9   NAQSKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIETS 68
           ++    DVF++ RG DT+    + + + L R  ++ F+D++ ++ G+++   + SAI   
Sbjct: 22  SSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNC 81

Query: 69  DISIIIFSENYASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDVR 116
            + + +FS  Y  S +CL EL  I++ KKR    V+P+F  V PS +R
Sbjct: 82  KVGVAVFSPRYCESYFCLHELALIMESKKR----VIPIFCDVKPSQLR 125

Length = 187

>gnl|CDD|222311 pfam13676, TIR_2, TIR domain

 Score = 58.4 bits (142), Expect = 8e-12
 Identities = 23/100 (23%), Positives = 51/100 (51%), Gaps = 9/100 (9%)

Query: 16  VFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIETSDISIIIF 75
           VF+S+   D    +   + +AL    I+ ++D  ++  GE+    +  A+ ++D+ +++ 
Sbjct: 1   VFISYASADRE--WAEWLADALEAAGIRVWLD-WDIPPGEDWRDEIEEALRSADVVLVLL 57

Query: 76  SENYASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDV 115
           S  Y +S WC  E    L+  KR    ++PV  +++  ++
Sbjct: 58  SPAYLASPWCRAEWGAALERGKR----LIPV--RLEDCEL 91

This is a family of bacterial Toll-like receptors. Length = 102

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	177
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PLN03194	187	putative disease resistance protein; Provisional	100.0
PF01582	141	TIR: TIR domain; InterPro: IPR000157 In Drosophila	99.95
smart00255	140	TIR Toll - interleukin 1 - resistance.	99.93
PF13676	102	TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_	99.79
KOG3678	832	consensus SARM protein (with sterile alpha and arm	99.03
PF08937	130	DUF1863: MTH538 TIR-like domain (DUF1863); InterPr	98.67
PF08357	150	SEFIR: SEFIR domain; InterPro: IPR013568 This doma	97.89
PF10137	125	TIR-like: Predicted nucleotide-binding protein con	97.18
PF13271	83	DUF4062: Domain of unknown function (DUF4062)	94.39
COG4916	329	Uncharacterized protein containing a TIR (Toll-Int	94.14
PF05014	113	Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransfer	88.14
PF14258	70	DUF4350: Domain of unknown function (DUF4350)	84.42
cd00860	91	ThrRS_anticodon ThrRS Threonyl-anticodon binding d	83.3

>PLN03210 Resistant to P

Probab=100.00  E-value=2.6e-47  Score=366.87  Aligned_cols=172  Identities=45%  Similarity=0.736  Sum_probs=155.6

Q ss_pred             CCCCCCCCCCCCeeeEEEecccCCCccchHHHHHHHHhcCCcEEEEeCCcccCCccccHHHHhccccCcEEEEEeecccc
Q 044147            1 MASSSTNLNAQSKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIETSDISIIIFSENYA   80 (177)
Q Consensus         1 m~sss~s~~~~~~ydVFIS~~~~D~r~~fv~~L~~~L~~~gi~~f~d~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~~y~   80 (177)
                      ||||||| ++.++|||||||||+|+|++|++||+.+|.++||++|+|+ ++++|+.+.+++.+||++|+++|||||++|+
T Consensus         1 ~~~~~~~-~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~-~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya   78 (1153)
T PLN03210          1 MASSSSS-SRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDN-EIERSQSLDPELKQAIRDSRIAVVVFSKNYA   78 (1153)
T ss_pred             CCCCCCC-CCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccC-CccCCCcccHHHHHHHHhCeEEEEEecCCcc
Confidence            7777654 4689999999999999999999999999999999999987 5999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHhhhccCCceEEeEEeecCchhhhcccCcHHHHHhhhhhcCCChhHHHHHHHHHHHhhcccceeecCC
Q 044147           81 SSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDVRKQMGSFGEAFVHHERNFPCEVRVQKWRDSLIQASNISGFLDSRS  160 (177)
Q Consensus        81 ~S~wc~~El~~i~~~~~~~~~~ViPVfy~v~psdv~~q~g~f~~~f~~~~~~~~~~e~v~~W~~AL~~v~~~~G~~~~~~  160 (177)
                      +|.||++||++|++|+++++++||||||+|+|+|||+|+|.||++|.+++++. ..+++++||.||++|++++||++.+.
T Consensus        79 ~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~-~~~~~~~w~~al~~~~~~~g~~~~~~  157 (1153)
T PLN03210         79 SSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNK-TEDEKIQWKQALTDVANILGYHSQNW  157 (1153)
T ss_pred             cchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhccc-chhHHHHHHHHHHHHhCcCceecCCC
Confidence            99999999999999999999999999999999999999999999999998775 48899999999999999999999763


Q ss_pred             Ccc--cchHHHHHHHhh
Q 044147          161 FRL--WDHEDVYDVLTK  175 (177)
Q Consensus       161 ~~~--~~~~~~~~~~~~  175 (177)
                      ...  -..++|.+|+++
T Consensus       158 ~~E~~~i~~Iv~~v~~~  174 (1153)
T PLN03210        158 PNEAKMIEEIANDVLGK  174 (1153)
T ss_pred             CCHHHHHHHHHHHHHHh
Confidence            311  113666666654

syringae 6; Provisional

>PLN03194 putative disease resistance protein; Provisional

Probab=100.00  E-value=6.1e-47  Score=295.94  Aligned_cols=135  Identities=26%  Similarity=0.489  Sum_probs=124.8

Q ss_pred             CCeeeEEEecccCCCccchHHHHHHHHhcCCcEEEEeCCcccCCccccHHHHhccccCcEEEEEeeccccCChhhHHHHH
Q 044147           11 QSKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIETSDISIIIFSENYASSTWCLDELV   90 (177)
Q Consensus        11 ~~~ydVFIS~~~~D~r~~fv~~L~~~L~~~gi~~f~d~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~~y~~S~wc~~El~   90 (177)
                      +++|||||||+|+|+|++|++||+.+|+++||++|+|+.++.+|+.|.+.|.+||++|+++|+||||+|++|.||++||+
T Consensus        24 ~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdEL~  103 (187)
T PLN03194         24 AKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHELA  103 (187)
T ss_pred             CCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhccCCceEEeEEeecCchhhhcccCcHHHHHhhhhhcCCChhHHHHHHHHHHHhhcccceeecCC
Q 044147           91 RILDCKKRNGQIVVPVFYKVDPSDVRKQMGSFGEAFVHHERNFPCEVRVQKWRDSLIQASNISGFLDSRS  160 (177)
Q Consensus        91 ~i~~~~~~~~~~ViPVfy~v~psdv~~q~g~f~~~f~~~~~~~~~~e~v~~W~~AL~~v~~~~G~~~~~~  160 (177)
                      +|+++.    ..||||||+|+|++||+|..          ... +.+++++||.||++|++++|+++...
T Consensus       104 ~I~e~~----~~ViPIFY~VdPsdVr~q~~----------~~~-~~e~v~~Wr~AL~~va~l~G~~~~~~  158 (187)
T PLN03194        104 LIMESK----KRVIPIFCDVKPSQLRVVDN----------GTC-PDEEIRRFNWALEEAKYTVGLTFDSL  158 (187)
T ss_pred             HHHHcC----CEEEEEEecCCHHHhhcccc----------CCC-CHHHHHHHHHHHHHHhccccccCCCC
Confidence            999874    37999999999999999732          112 47999999999999999999988653

>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo

Probab=99.95  E-value=1.4e-28  Score=185.64  Aligned_cols=133  Identities=35%  Similarity=0.567  Sum_probs=118.3

Q ss_pred             EEEecccCCCccchHHHHHHHHhcC--CcEEEEeCCcccCCccccHHHHhccccCcEEEEEeeccccCChhhHHHHHHHH
Q 044147           16 VFLSFRGEDTRTGFTSHVVEALRRK--QIQFFIDDEELQRGEEISPALLSAIETSDISIIIFSENYASSTWCLDELVRIL   93 (177)
Q Consensus        16 VFIS~~~~D~r~~fv~~L~~~L~~~--gi~~f~d~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~~y~~S~wc~~El~~i~   93 (177)
                      |||||++.+++..|+.+|..+|++.  |+++|++++++.+|..+.++|.++|++|+++|+|||++|+.|.||+.||..++
T Consensus         1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~   80 (141)
T PF01582_consen    1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL   80 (141)
T ss_dssp             EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred             cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence            8999999444689999999999999  99999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccC--CceEEeEEeecCchhhh-cccCcHHHHHhhhhhcCCC---hhHHHHHHHHHHH
Q 044147           94 DCKKRN--GQIVVPVFYKVDPSDVR-KQMGSFGEAFVHHERNFPC---EVRVQKWRDSLIQ  148 (177)
Q Consensus        94 ~~~~~~--~~~ViPVfy~v~psdv~-~q~g~f~~~f~~~~~~~~~---~e~v~~W~~AL~~  148 (177)
                      ++..+.  ..+|+||||++.+++++ .+++.|+..|..+.....+   ..+...|++++.+
T Consensus        81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~~  141 (141)
T PF01582_consen   81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRYH  141 (141)
T ss_dssp             HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHHH
T ss_pred             hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhcC
Confidence            997654  48999999999999999 7999999999988877652   5689999999763

In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....

>smart00255 TIR Toll - interleukin 1 - resistance

Probab=99.93  E-value=2.3e-25  Score=166.29  Aligned_cols=136  Identities=43%  Similarity=0.715  Sum_probs=114.0

Q ss_pred             eeeEEEeccc-CCCccchHHHHHHHHhcCCcEEEEeCCcccCCccccHHHHhccccCcEEEEEeeccccCChhhHHHHHH
Q 044147           13 KFDVFLSFRG-EDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIETSDISIIIFSENYASSTWCLDELVR   91 (177)
Q Consensus        13 ~ydVFIS~~~-~D~r~~fv~~L~~~L~~~gi~~f~d~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~~y~~S~wc~~El~~   91 (177)
                      +|||||||++ ++....|+.+|...|...|+.+|.|+..+  |.....+|.++|++|+++|+|+||+|..|.||..|+..
T Consensus         1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~--~~~~~~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~   78 (140)
T smart00255        1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEP--GGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVA   78 (140)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCccc--ccchHHHHHHHHHHCcEEEEEECcccccChhHHHHHHH
Confidence            4999999999 45557999999999999999999997633  33333399999999999999999999999999999999


Q ss_pred             HHhhhcc-CCceEEeEEeecCchhhhcccCcHHHHHhhhhhcCCChhHH-HHHHHHHHHhhc
Q 044147           92 ILDCKKR-NGQIVVPVFYKVDPSDVRKQMGSFGEAFVHHERNFPCEVRV-QKWRDSLIQASN  151 (177)
Q Consensus        92 i~~~~~~-~~~~ViPVfy~v~psdv~~q~g~f~~~f~~~~~~~~~~e~v-~~W~~AL~~v~~  151 (177)
                      ++++..+ ...+||||+++..|+++..+.+.++..+........ .+.. +.|+.++..+.+
T Consensus        79 a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~-~~~~~~fW~~~~~~l~~  139 (140)
T smart00255       79 ALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWP-EDEKERFWKKALYAVPS  139 (140)
T ss_pred             HHHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcC-CchhHHHHHHHHHHhcc
Confidence            9988654 667999999999999999999999999987744443 2222 789999988764

>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A

Probab=99.79  E-value=1.6e-19  Score=128.52  Aligned_cols=87  Identities=34%  Similarity=0.619  Sum_probs=75.8

Q ss_pred             EEEecccCCCccchHHHHHHHHhcCCcEEEEeCCcccCCccccHHHHhccccCcEEEEEeeccccCChhhHHHHHHHHhh
Q 044147           16 VFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIETSDISIIIFSENYASSTWCLDELVRILDC   95 (177)
Q Consensus        16 VFIS~~~~D~r~~fv~~L~~~L~~~gi~~f~d~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~~y~~S~wc~~El~~i~~~   95 (177)
                      |||||+++|  ..++..|...|+..|+++|+|. ++.+|+.+.+.|.++|++|++.|+++||+|..|+||..|+..+.+ 
T Consensus         1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~-~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~-   76 (102)
T PF13676_consen    1 VFISYSSED--REFAERLAERLESAGIRVFLDR-DIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK-   76 (102)
T ss_dssp             EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GG-EE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC-
T ss_pred             eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEE-eCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH-
Confidence            899999999  5799999999999999999997 899999999999999999999999999999999999999999843 


Q ss_pred             hccCCceEEeEEee
Q 044147           96 KKRNGQIVVPVFYK  109 (177)
Q Consensus        96 ~~~~~~~ViPVfy~  109 (177)
                         .+..||||.++
T Consensus        77 ---~~~~iipv~~~   87 (102)
T PF13676_consen   77 ---RGKPIIPVRLD   87 (102)
T ss_dssp             ---TSESEEEEECS
T ss_pred             ---CCCEEEEEEEC
Confidence               44589999964

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=99.03  E-value=5.1e-10  Score=98.70  Aligned_cols=93  Identities=25%  Similarity=0.457  Sum_probs=79.4

Q ss_pred             CCCeeeEEEecccCCCccchHHHHHHHHhcCCcEEEEeCCcccCCccccHHHHhccccCcEEEEEeecccc--------C
Q 044147           10 AQSKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIETSDISIIIFSENYA--------S   81 (177)
Q Consensus        10 ~~~~ydVFIS~~~~D~r~~fv~~L~~~L~~~gi~~f~d~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~~y~--------~   81 (177)
                      -+++.|||||||+.- ...+++-|.-.|+-+|++||+|-+.+..|.. .+.+.+.|...+.+|+|++|+..        .
T Consensus       609 ~skq~DVFISYRRst-GnQLASLiKV~LQL~GyrVFIDVdKL~AGKF-dssLlkni~aAkhFiLVLtP~sLDr~lnD~nC  686 (832)
T KOG3678|consen  609 LSKQIDVFISYRRST-GNQLASLIKVLLQLRGYRVFIDVDKLYAGKF-DSSLLKNIQAAKHFILVLTPNSLDRLLNDDNC  686 (832)
T ss_pred             ccCCcceEEEeeccc-cHHHHHHHHHHHHhcCceEEEehhhhhcccc-cHHHHHHHHhhheeEEEeCcchHHHHhccccH
Confidence            357899999998775 4689999999999999999999998998864 56889999999999999999975        2


Q ss_pred             ChhhHHHHHHHHhhhccCCceEEeEEe
Q 044147           82 STWCLDELVRILDCKKRNGQIVVPVFY  108 (177)
Q Consensus        82 S~wc~~El~~i~~~~~~~~~~ViPVfy  108 (177)
                      -.|...||..+++|.+    .|||||=
T Consensus       687 eDWVHKEl~~Afe~~K----NIiPI~D  709 (832)
T KOG3678|consen  687 EDWVHKELKCAFEHQK----NIIPIFD  709 (832)
T ss_pred             HHHHHHHHHHHHHhcC----Ceeeeec
Confidence            3677888888888866    7999984

>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments

Probab=98.67  E-value=3.3e-08  Score=73.58  Aligned_cols=91  Identities=22%  Similarity=0.404  Sum_probs=49.3

Q ss_pred             eeEEEecccCCCccchHHHHHHHHhcC-------CcEE----------EEeCCcccCCccccHHHHhccccCcEEEEEee
Q 044147           14 FDVFLSFRGEDTRTGFTSHVVEALRRK-------QIQF----------FIDDEELQRGEEISPALLSAIETSDISIIIFS   76 (177)
Q Consensus        14 ydVFIS~~~~D~r~~fv~~L~~~L~~~-------gi~~----------f~d~~~l~~G~~i~~~i~~aI~~S~~~IvV~S   76 (177)
                      |.|||||++.|. ...+..|...+...       .+..          +.+..+......|...|.+.|.+|.++||+++
T Consensus         1 ~~vFIS~~~~d~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig   79 (130)
T PF08937_consen    1 YKVFISYSHDDD-DWYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG   79 (130)
T ss_dssp             ----------TH-H-HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred             CCccccccccCc-HHHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence            579999999994 34777777777662       2211          12222223345788899999999999999999


Q ss_pred             ccccCChhhHHHHHHHHhhhccCCceEEeEEee
Q 044147           77 ENYASSTWCLDELVRILDCKKRNGQIVVPVFYK  109 (177)
Q Consensus        77 ~~y~~S~wc~~El~~i~~~~~~~~~~ViPVfy~  109 (177)
                      ++-..|.|+..|+..+++.    +..||.|.++
T Consensus        80 ~~T~~s~wV~~EI~~A~~~----~~~Ii~V~~~  108 (130)
T PF08937_consen   80 PNTAKSKWVNWEIEYALKK----GKPIIGVYLP  108 (130)
T ss_dssp             TT----HHHHHHHHHHTTT-------EEEEETT
T ss_pred             CCcccCcHHHHHHHHHHHC----CCCEEEEECC
Confidence            9999999999999998873    4578888764

The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.

>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e

Probab=97.89  E-value=5.4e-05  Score=57.11  Aligned_cols=65  Identities=23%  Similarity=0.379  Sum_probs=53.4

Q ss_pred             eEEEecccCCCc-cchHHHHHHHHhcC-CcEEEEeCCcccC--CccccHHHHhccccCcEEEEEeeccc
Q 044147           15 DVFLSFRGEDTR-TGFTSHVVEALRRK-QIQFFIDDEELQR--GEEISPALLSAIETSDISIIIFSENY   79 (177)
Q Consensus        15 dVFIS~~~~D~r-~~fv~~L~~~L~~~-gi~~f~d~~~l~~--G~~i~~~i~~aI~~S~~~IvV~S~~y   79 (177)
                      -|||||+..... ...|..|...|++. |+.|.+|..+...  +..+..=+.+.+++++..|+|+||.+
T Consensus         2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~   70 (150)
T PF08357_consen    2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY   70 (150)
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence            499999985532 36689999999999 9999999877743  66677777788999999999999544

g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].

>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins

Probab=97.18  E-value=0.0012  Score=49.03  Aligned_cols=78  Identities=21%  Similarity=0.247  Sum_probs=62.5

Q ss_pred             eEEEecccCCCccchHHHHHHHHhcCCcEEEEeCCcccCCccccHHHHhccccCcEEEEEeecccc-------------C
Q 044147           15 DVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIETSDISIIIFSENYA-------------S   81 (177)
Q Consensus        15 dVFIS~~~~D~r~~fv~~L~~~L~~~gi~~f~d~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~~y~-------------~   81 (177)
                      .|||.|+ .|  ...+..+...|+..|+.+.+-.+....|..+.+.+.+.+.+++.+|++++|+=.             .
T Consensus         1 kVFIvhg-~~--~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpDD~~~~~~~~~~~~~~a   77 (125)
T PF10137_consen    1 KVFIVHG-RD--LAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPDDIGYSRGEEEDLQPRA   77 (125)
T ss_pred             CEEEEeC-CC--HHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEcccccccccCCcccccccc
Confidence            3899998 55  368889999999889887776666789999999999999999999999998521             2


Q ss_pred             ChhhHHHHHHHHhh
Q 044147           82 STWCLDELVRILDC   95 (177)
Q Consensus        82 S~wc~~El~~i~~~   95 (177)
                      ..-.+.|+..++..
T Consensus        78 R~NVifE~G~f~g~   91 (125)
T PF10137_consen   78 RQNVIFELGLFIGK   91 (125)
T ss_pred             ccceeehhhHHHhh
Confidence            23456788887765

Their exact function has not, as yet, been defined.

>PF13271 DUF4062: Domain of unknown function (DUF4062)

Probab=94.39  E-value=0.12  Score=35.29  Aligned_cols=68  Identities=22%  Similarity=0.205  Sum_probs=48.3

Q ss_pred             eEEEecccCCCccchHHHHHHHHhcCCcEEEEeCCcccCCccccHHHHhccccCcEEEEEeeccccCCh
Q 044147           15 DVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIETSDISIIIFSENYASST   83 (177)
Q Consensus        15 dVFIS~~~~D~r~~fv~~L~~~L~~~gi~~f~d~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~~y~~S~   83 (177)
                      .||||-.-.|. +.--..|...|.+.|..+..-+.--..+....+.+++.|++|+++|.++-.+|...+
T Consensus         1 rVFiSSt~~Dl-~~eR~~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~~cDifI~ilG~rYG~~~   68 (83)
T PF13271_consen    1 RVFISSTFRDL-KEERDALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVDECDIFILILGNRYGSVP   68 (83)
T ss_pred             CEEEecChhhH-HHHHHHHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHhhCCEEEEeeccccCCCC
Confidence            38999887886 344567777887777655332211123555667888999999999999999998644

>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown]

Probab=94.14  E-value=0.083  Score=43.97  Aligned_cols=100  Identities=16%  Similarity=0.111  Sum_probs=68.8

Q ss_pred             CCCeeeEEEecccCCCccchHHHHHHHHh--cCCcEEEEeCCc---ccCCccccHHHHhcc--ccCcEEEEEeeccccCC
Q 044147           10 AQSKFDVFLSFRGEDTRTGFTSHVVEALR--RKQIQFFIDDEE---LQRGEEISPALLSAI--ETSDISIIIFSENYASS   82 (177)
Q Consensus        10 ~~~~ydVFIS~~~~D~r~~fv~~L~~~L~--~~gi~~f~d~~~---l~~G~~i~~~i~~aI--~~S~~~IvV~S~~y~~S   82 (177)
                      ..+.||+=|||.|+-  +.+|+....+++  ..-+..|+|-.-   +.+|+ +. .++.-+  ..|++.+|....+|...
T Consensus       174 ~~~~~DiG~SFaGEA--R~LVEqV~~E~~~~~~p~~~FYD~~~~~~L~~~s-L~-~~L~~~Y~~rC~~~~VF~~~~Y~~K  249 (329)
T COG4916         174 SEKPVDSGISFAGEA--RNLVEQVQTEHSGLDIPTRRFYDLLVAHPLYPGS-LV-STLDPGYDIRCVVTTVFNTGSYICK  249 (329)
T ss_pred             cccccceeeEeehhh--hhHHHHHHHhhhcccCCceeeeechhhccccCcc-HH-HhcccccCceEEEEEEEeCCceEEe
Confidence            478899999999997  589999999998  445778888532   23332 22 233322  36888999999999999


Q ss_pred             hhhHHHHHHHHhhhccCCceEEeEEe-ecCchhh
Q 044147           83 TWCLDELVRILDCKKRNGQIVVPVFY-KVDPSDV  115 (177)
Q Consensus        83 ~wc~~El~~i~~~~~~~~~~ViPVfy-~v~psdv  115 (177)
                      .||..|-..+-...  .-....||.| +++.+.+
T Consensus       250 ~~c~~E~~~~r~~~--~~d~~~rI~~~~~d~~a~  281 (329)
T COG4916         250 STCHIEGLEGRLNP--ILDTGFRIKYLYADNIAI  281 (329)
T ss_pred             eeeccchhhccccc--cccccceEEEEecCCccc
Confidence            99999976653321  2235667766 3444433

>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2

Probab=88.14  E-value=2.2  Score=30.42  Aligned_cols=70  Identities=19%  Similarity=0.125  Sum_probs=51.2

Q ss_pred             cchHHHHHHHHhcCCcEEEEeCCc-cc-------CCccccHHHHhccccCcEEEEEeeccccCChhhHHHHHHHHhhhc
Q 044147           27 TGFTSHVVEALRRKQIQFFIDDEE-LQ-------RGEEISPALLSAIETSDISIIIFSENYASSTWCLDELVRILDCKK   97 (177)
Q Consensus        27 ~~fv~~L~~~L~~~gi~~f~d~~~-l~-------~G~~i~~~i~~aI~~S~~~IvV~S~~y~~S~wc~~El~~i~~~~~   97 (177)
                      ..+...+.+.|++.|+.+|...+. ..       ....+...-.++|++|++.|+++.+.- .+.=+..|+..+....+
T Consensus        13 ~~~~~~~~~~L~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~d~~~i~~~D~via~l~~~~-~d~Gt~~ElG~A~algk   90 (113)
T PF05014_consen   13 KARVERLREALEKNGFEVYSPQDNDENDEEDSQEWAREIFERDLEGIRECDIVIANLDGFR-PDSGTAFELGYAYALGK   90 (113)
T ss_dssp             HHHHHHHHHHHHTTTTEEEGGCTCSSS--TTSHHCHHHHHHHHHHHHHHSSEEEEEECSSS---HHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHhCCCEEEeccccccccccccchHHHHHHHHHHHHHHHCCEEEEECCCCC-CCCcHHHHHHHHHHCCC
Confidence            578899999999999999886531 11       223344455678999999999998766 56668899999877543

4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....

>PF14258 DUF4350: Domain of unknown function (DUF4350)

Probab=84.42  E-value=6.7  Score=25.34  Aligned_cols=61  Identities=13%  Similarity=0.194  Sum_probs=38.5

Q ss_pred             HHHHHHHhcCCcEEEEeCCcccCCccccHHHHhccccCcEEEEEeeccccCChhhHHHHHHHHhhhccCCceEE
Q 044147           31 SHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIETSDISIIIFSENYASSTWCLDELVRILDCKKRNGQIVV  104 (177)
Q Consensus        31 ~~L~~~L~~~gi~~f~d~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~~y~~S~wc~~El~~i~~~~~~~~~~Vi  104 (177)
                      ..|+.-|++.|+++-....           ..+++....-++++++|.+.-+.  ..++..+.+..+.++..||
T Consensus         8 ~a~~~~L~~~g~~v~~~~~-----------~~~~l~~~~~tll~i~~~~~~~~--~~~~~~l~~~v~~G~~lvl   68 (70)
T PF14258_consen    8 YALYQLLEEQGVKVERWRK-----------PYEALEADDGTLLVIGPDLRLSE--PEEAEALLEWVEAGNTLVL   68 (70)
T ss_pred             HHHHHHHHHCCCeeEEecc-----------cHHHhCCCCCEEEEEeCCCCCCc--hHHHHHHHHHHHcCCEEEE
Confidence            4677888888998854332           12244457789999999966554  3455555555555666554

>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain

Probab=83.30  E-value=4.1  Score=27.09  Aligned_cols=61  Identities=13%  Similarity=0.163  Sum_probs=39.3

Q ss_pred             eeEEEecccCCCccchHHHHHHHHhcCCcEEEEeCCcccCCccccHHHHhccccCcEEEEEeeccc
Q 044147           14 FDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIETSDISIIIFSENY   79 (177)
Q Consensus        14 ydVFIS~~~~D~r~~fv~~L~~~L~~~gi~~f~d~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~~y   79 (177)
                      ++|+|...+.+. ...+-.+...|++.|+++-+|...    ..+...+..|-+.---.++++.++-
T Consensus         2 ~~v~ii~~~~~~-~~~a~~~~~~Lr~~g~~v~~d~~~----~~~~~~~~~a~~~g~~~~iiig~~e   62 (91)
T cd00860           2 VQVVVIPVTDEH-LDYAKEVAKKLSDAGIRVEVDLRN----EKLGKKIREAQLQKIPYILVVGDKE   62 (91)
T ss_pred             eEEEEEeeCchH-HHHHHHHHHHHHHCCCEEEEECCC----CCHHHHHHHHHHcCCCEEEEECcch
Confidence            687776655443 467889999999999999998643    3555555555433333444455443

ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	177
3jrn_A	176	Crystal Structure Of Tir Domain From Arabidopsis Th		9e-33
3ozi_A	204	Crystal Structure Of The Tir Domain From The Flax D		5e-31
3h16_A	154	Crystal Structure Of A Bacteria Tir Domain, Pdtir F		2e-04

>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana Length = 176

Iteration: 1
 Score =  135 bits (341), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 67/146 (45%), Positives = 94/146 (64%), Gaps = 1/146 (0%)
Query: 9   NAQSKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIETS 68
           +  +K+DVFLSFRG DTR  F S + + L R+ I+ F DD+EL+ G+  SP L S IE S
Sbjct: 4   HTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVS 63
Query: 69  DISIIIFSENYASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDVRKQMGSFGEAFVH 128
             ++++ SENYA+S+WCLDELV I+D +K+    V+P+FY V+P+ VR Q G   E F  
Sbjct: 64  RFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKK 123
Query: 129 HERNFPCEVRVQKWRDSLIQASNISG 154
           H      E +V KWR +L   + +SG
Sbjct: 124 HASREDPE-KVLKWRQALTNFAQLSG 148

>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease Resistance Protein L6 Length = 204

Iteration: 1
 Score =  130 bits (326), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 68/157 (43%), Positives = 99/157 (63%), Gaps = 5/157 (3%)
Query: 3   SSSTNLNAQ---SKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISP 59
           S STN +      +++VFLSFRG DTR  FT  + ++LRR +I  F DD+EL +G+EI P
Sbjct: 22  SDSTNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGP 81
Query: 60  ALLSAIETSDISIIIFSENYASSTWCLDELVRILDCKKRNG-QIVVPVFYKVDPSDVRKQ 118
            LL AI+ S I + I S  YA S WCL EL  I+  ++ +  +I++P+FY VDPSDVR Q
Sbjct: 82  NLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQ 141
Query: 119 MGSFGEAFVHHERNFPCEVRVQKWRDSLIQASNISGF 155
            G + +AF  H   F  +  +Q W+D+L +  ++ G+
Sbjct: 142 TGCYKKAFRKHANKFDGQT-IQNWKDALKKVGDLKGW 177

>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From Paracoccus Denitrificans Length = 154

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/113 (20%), Positives = 53/113 (46%), Gaps = 1/113 (0%)
Query: 3   SSSTNLNAQSKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALL 62
           +++ +L +    D+F+S   ED +  F   +   LR    + + DD  L+ G+ +  ++ 
Sbjct: 10  TTNADLTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSID 68
Query: 63  SAIETSDISIIIFSENYASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDV 115
             + +S   I++ S ++    W   EL  +   +      ++P+++KV   +V
Sbjct: 69  KGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEV 121

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	177
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	1e-90
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	3e-89
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	6e-74
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	5e-18
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	5e-09
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	7e-08
2js7_A	160	Myeloid differentiation primary response protein M	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	4e-05

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Length = 176

 Score =  261 bits (669), Expect = 1e-90
 Identities = 69/160 (43%), Positives = 97/160 (60%), Gaps = 6/160 (3%)

Query: 1   MASSSTNLNAQSKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPA 60
           M+S +      +K+DVFLSFRG DTR  F S + + L R+ I+ F DD+EL+ G+  SP 
Sbjct: 1   MSSHT-----ATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPE 55

Query: 61  LLSAIETSDISIIIFSENYASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDVRKQMG 120
           L S IE S  ++++ SENYA+S+WCLDELV I+D +K+    V+P+FY V+P+ VR Q G
Sbjct: 56  LKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTG 115

Query: 121 SFGEAFVHHERNFPCEVRVQKWRDSLIQASNISGFLDSRS 160
              E F  H      E +V KWR +L   + +SG      
Sbjct: 116 VLAEQFKKHASREDPE-KVLKWRQALTNFAQLSGDCSGDD 154

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Length = 204

 Score =  258 bits (662), Expect = 3e-89
 Identities = 66/181 (36%), Positives = 103/181 (56%), Gaps = 12/181 (6%)

Query: 2   ASSSTNLNAQSKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPAL 61
           +++ +      +++VFLSFRG DTR  FT  + ++LRR +I  F DD+EL +G+EI P L
Sbjct: 24  STNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNL 83

Query: 62  LSAIETSDISIIIFSENYASSTWCLDELVRILDCKKRNG-QIVVPVFYKVDPSDVRKQMG 120
           L AI+ S I + I S  YA S WCL EL  I+  ++ +  +I++P+FY VDPSDVR Q G
Sbjct: 84  LRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTG 143

Query: 121 SFGEAFVHHERNFPCEVRVQKWRDSLIQASNISGFLDSRSFRLWDHED------VYDVLT 174
            + +AF  H   F  +  +Q W+D+L +  ++ G+         D +         D+ +
Sbjct: 144 CYKKAFRKHANKFDGQ-TIQNWKDALKKVGDLKGW----HIGKNDKQGAIADKVSADIWS 198

Query: 175 K 175
            
Sbjct: 199 H 199

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154

 Score =  217 bits (556), Expect = 6e-74
 Identities = 24/147 (16%), Positives = 62/147 (42%), Gaps = 2/147 (1%)

Query: 2   ASSSTNLNAQSKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPAL 61
            +++ +L +    D+F+S   ED +  F   +   LR    + + DD  L+ G+ +  ++
Sbjct: 9   PTTNADLTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSI 67

Query: 62  LSAIETSDISIIIFSENYASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDVRKQMGS 121
              + +S   I++ S ++    W   EL  +   +      ++P+++KV   +V     +
Sbjct: 68  DKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPT 127

Query: 122 FGEAFVHHERNFPCEVRVQKWRDSLIQ 148
             +    +      +  +     ++I+
Sbjct: 128 MADKLAFNTSTKSVD-EIVADLMAIIR 153

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Length = 146

 Score = 75.5 bits (186), Expect = 5e-18
 Identities = 17/139 (12%), Positives = 53/139 (38%), Gaps = 9/139 (6%)

Query: 13  KFDVFLSFRGEDTRTGFTSHVVEAL--RRKQIQFFIDDEELQRGEEISPALLSAIETSDI 70
            +DV +    ED        +V  L      ++ F+   +   G  I   L  A+ +S  
Sbjct: 10  DYDVCVCHSEEDLV--AAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHC 67

Query: 71  SIIIFSENYASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDVRKQMGSFGEAFVHHE 130
            +++ +  +    WC  ++++ L          +P+   +  +    ++      F+++ 
Sbjct: 68  RVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELR-----FMYYV 122

Query: 131 RNFPCEVRVQKWRDSLIQA 149
                +   ++ ++++++ 
Sbjct: 123 DGRGPDGGFRQVKEAVMRY 141

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens} Length = 159

 Score = 51.6 bits (123), Expect = 5e-09
 Identities = 18/120 (15%), Positives = 38/120 (31%), Gaps = 13/120 (10%)

Query: 13  KFDVFLSFRGEDTRTG---------FTSHVVEAL--RRKQIQFFIDDEELQRGEEISPAL 61
            +D +LS+   D             F   ++  +  +    + FI D +L         +
Sbjct: 2   DYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDV 61

Query: 62  LSAIETSDISIIIFSENYA-SSTWC-LDELVRILDCKKRNGQIVVPVFYKVDPSDVRKQM 119
              ++ S   II+ + NY     W   +   R+ +        V+ +        +  Q 
Sbjct: 62  ARCVDQSKRLIIVMTPNYVVRRGWSIFELETRLRNMLVTGEIKVILIECSELRGIMNYQE 121

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A Length = 178

 Score = 48.8 bits (116), Expect = 7e-08
 Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 10/106 (9%)

Query: 13  KFDVFLSFRGEDTRTGFTSHVVEAL--RRKQIQFFIDDEELQRGEEISPALLSAIETSDI 70
           +F  F+S+   D+     + ++  L      I   + +     G+ IS  ++S IE S  
Sbjct: 35  RFHAFISYSEHDSLW-VKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYK 93

Query: 71  SIIIFSENYASSTWCLDE----LVRILDCKKRNGQIVVPVFYKVDP 112
           SI + S N+  + WC  E       +      +   ++ +  +  P
Sbjct: 94  SIFVLSPNFVQNEWCHYEFYFAHHNLFHENSDH---IILILLEPIP 136

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A Length = 160

 Score = 44.0 bits (104), Expect = 3e-06
 Identities = 18/114 (15%), Positives = 44/114 (38%), Gaps = 12/114 (10%)

Query: 13  KFDVFLSFRGEDTRTGFTSHVVEAL--RRKQIQFFIDDEELQRGEEISPALLSAIET-SD 69
           +FD F+ +   D +  F   ++  L     +++  + D ++  G  +       IE    
Sbjct: 16  RFDAFICYCPSDIQ--FVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCR 73

Query: 70  ISIIIFSENYASSTWCLDE----LVRILDCKKRNGQIVVPVFYKVDPSDVRKQM 119
             +++ S++Y  S  C  +    L       ++    ++P+ YK    +    +
Sbjct: 74  RMVVVVSDDYLQSKECDFQTKFALSLSPGAHQK---RLIPIKYKAMKKEFPSIL 124

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 1e-05
 Identities = 33/179 (18%), Positives = 57/179 (31%), Gaps = 48/179 (26%)

Query: 2   ASSSTNLNAQSKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQR-GEEISPA 60
              +  L+A +   + L    +      T   V++L  K +      ++L R     +P 
Sbjct: 275 KQVTDFLSAATTTHISL----DHHSMTLTPDEVKSLLLKYLD--CRPQDLPREVLTTNPR 328

Query: 61  LLSAIETSDISIIIFSENYASSTWCLDELVRILDCKKRNGQIVVPVFYKV-DPSDVRKQM 119
            LS I  S    +   +N+       D+L  I++               V +P++ RK  
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVN--CDKLTTIIE-----------SSLNVLEPAEYRKM- 374

Query: 120 GSFGEAFVHHERNFPCEVRVQKWRDSLIQASNISGFLDSRSFRLW---DHEDVYDVLTK 175
             F    V     FP          + I    +S         +W      DV  V+ K
Sbjct: 375 --FDRLSV-----FP--------PSAHIPTILLS--------LIWFDVIKSDVMVVVNK 410

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A Length = 149

 Score = 41.0 bits (96), Expect = 4e-05
 Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 4/98 (4%)

Query: 14  FDVFLSFRGEDTRTGFTSHVVEAL--RRKQIQFFIDDEELQRGEEISPALLSAIETSDIS 71
           +D F+S+   D      + +V+ L       +  +   +   G+ I   ++ +IE S  +
Sbjct: 6   YDAFVSYSERDAYW-VENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKT 64

Query: 72  IIIFSENYASSTWCLDELVRILD-CKKRNGQIVVPVFY 108
           + + SEN+  S W   EL          N    + +  
Sbjct: 65  VFVLSENFVKSEWXKYELDFSHFRLFDENNDAAILILL 102

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	177
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	100.0
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	100.0
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	100.0
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	99.96
2js7_A	160	Myeloid differentiation primary response protein M	99.93
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	99.93
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	99.92
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	99.92
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.77
1eiw_A	111	Hypothetical protein MTH538; CHEY-like fold, flavo	98.23
3hyn_A	189	Putative signal transduction protein; DUF1863 fami	96.88
2f62_A	161	Nucleoside 2-deoxyribosyltransferase; SGPP, struct	88.63
4fyk_A	152	Deoxyribonucleoside 5'-monophosphate N-glycosidas;	80.8
3ehd_A	162	Uncharacterized conserved protein; PSI,MCSG,PF0501	80.09

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}

Probab=100.00  E-value=1.7e-56  Score=355.47  Aligned_cols=168  Identities=39%  Similarity=0.692  Sum_probs=149.8

Q ss_pred             CCCCCCeeeEEEecccCCCccchHHHHHHHHhcCCcEEEEeCCcccCCccccHHHHhccccCcEEEEEeeccccCChhhH
Q 044147            7 NLNAQSKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIETSDISIIIFSENYASSTWCL   86 (177)
Q Consensus         7 s~~~~~~ydVFIS~~~~D~r~~fv~~L~~~L~~~gi~~f~d~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~~y~~S~wc~   86 (177)
                      +++|+++|||||||||+|+|..|++||+.+|+++||++|+|++++.+|+.|.++|.+||++|+++|+|||++|++|+||+
T Consensus        29 ~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl  108 (204)
T 3ozi_A           29 GSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCL  108 (204)
T ss_dssp             -----CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHH
T ss_pred             CCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHH
Confidence            44678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhcc-CCceEEeEEeecCchhhhcccCcHHHHHhhhhhcCCChhHHHHHHHHHHHhhcccceeecCCCccc-
Q 044147           87 DELVRILDCKKR-NGQIVVPVFYKVDPSDVRKQMGSFGEAFVHHERNFPCEVRVQKWRDSLIQASNISGFLDSRSFRLW-  164 (177)
Q Consensus        87 ~El~~i~~~~~~-~~~~ViPVfy~v~psdv~~q~g~f~~~f~~~~~~~~~~e~v~~W~~AL~~v~~~~G~~~~~~~~~~-  164 (177)
                      +||++|++|+++ ++++||||||+|+|++||+|+|.||++|.+|++++ +++++++||.||++||+++||++.+..+.. 
T Consensus       109 ~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~-~~~~v~~Wr~AL~~va~lsG~~~~~~~~e~~  187 (204)
T 3ozi_A          109 MELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKF-DGQTIQNWKDALKKVGDLKGWHIGKNDKQGA  187 (204)
T ss_dssp             HHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTS-CHHHHHHHHHHHHHHHTSCBEEECTTSCHHH
T ss_pred             HHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhh-CHHHHHHHHHHHHHHhccCceecCCCCCHHH
Confidence            999999999864 68999999999999999999999999999999988 488999999999999999999999865332 


Q ss_pred             -chHHHHHHHhh
Q 044147          165 -DHEDVYDVLTK  175 (177)
Q Consensus       165 -~~~~~~~~~~~  175 (177)
                       ..++|.+|..|
T Consensus       188 ~i~~Iv~di~~k  199 (204)
T 3ozi_A          188 IADKVSADIWSH  199 (204)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence             23455555443

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}

Probab=100.00  E-value=1.8e-56  Score=349.08  Aligned_cols=165  Identities=41%  Similarity=0.685  Sum_probs=137.5

Q ss_pred             CCCeeeEEEecccCCCccchHHHHHHHHhcCCcEEEEeCCcccCCccccHHHHhccccCcEEEEEeeccccCChhhHHHH
Q 044147           10 AQSKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIETSDISIIIFSENYASSTWCLDEL   89 (177)
Q Consensus        10 ~~~~ydVFIS~~~~D~r~~fv~~L~~~L~~~gi~~f~d~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~~y~~S~wc~~El   89 (177)
                      ++++|||||||||+|+|++|++||+.+|+++||++|+|++++.+|+.|.++|.+||++|+++|+|||+||++|+||++||
T Consensus         5 ~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL   84 (176)
T 3jrn_A            5 TATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDEL   84 (176)
T ss_dssp             --CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHH
T ss_pred             CCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhccCCceEEeEEeecCchhhhcccCcHHHHHhhhhhcCCChhHHHHHHHHHHHhhcccceeecCCCcccchHHH
Q 044147           90 VRILDCKKRNGQIVVPVFYKVDPSDVRKQMGSFGEAFVHHERNFPCEVRVQKWRDSLIQASNISGFLDSRSFRLWDHEDV  169 (177)
Q Consensus        90 ~~i~~~~~~~~~~ViPVfy~v~psdv~~q~g~f~~~f~~~~~~~~~~e~v~~W~~AL~~v~~~~G~~~~~~~~~~~~~~~  169 (177)
                      ++|++|.++++++||||||+|+|++||+|+|.||++|.+|+++. +++++++||.||++||+++||++.++......++|
T Consensus        85 ~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~~-~~~~~~~Wr~AL~~va~~~G~~~~~~e~~~i~~Iv  163 (176)
T 3jrn_A           85 VTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASRE-DPEKVLKWRQALTNFAQLSGDCSGDDDSKLVDKIA  163 (176)
T ss_dssp             HHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTSCCEECCSCHHHHHHHHH
T ss_pred             HHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhcc-CHHHHHHHHHHHHHHhcccceecCCCHHHHHHHHH
Confidence            99999998899999999999999999999999999999999885 58999999999999999999999543222334677


Q ss_pred             HHHHhh
Q 044147          170 YDVLTK  175 (177)
Q Consensus       170 ~~~~~~  175 (177)
                      .+|+++
T Consensus       164 ~~v~~~  169 (176)
T 3jrn_A          164 NEISNK  169 (176)
T ss_dssp             HHHHTT
T ss_pred             HHHHHH
Confidence            777665

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}

Probab=100.00  E-value=1.2e-37  Score=237.76  Aligned_cols=136  Identities=18%  Similarity=0.367  Sum_probs=120.7

Q ss_pred             CCCCeeeEEEecccCCCccchHHHHHHHHhcCCcEEEEeCCcccCCccccHHHHhccccCcEEEEEeeccccCChhhHHH
Q 044147            9 NAQSKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIETSDISIIIFSENYASSTWCLDE   88 (177)
Q Consensus         9 ~~~~~ydVFIS~~~~D~r~~fv~~L~~~L~~~gi~~f~d~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~~y~~S~wc~~E   88 (177)
                      .+.++|||||||+++| +..|+.+|+.+|+++||++|+|++++.+|+.+.++|.++|++|+++|+|+||+|++|.||+.|
T Consensus        16 ~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~E   94 (154)
T 3h16_A           16 TSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKE   94 (154)
T ss_dssp             --CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHH
T ss_pred             CCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHH
Confidence            4578999999999999 578999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhccCCceEEeEEeecCchhhhcccCcHHHHHhhhhhcCCChhHHHHHHHHHHHh
Q 044147           89 LVRILDCKKRNGQIVVPVFYKVDPSDVRKQMGSFGEAFVHHERNFPCEVRVQKWRDSLIQA  149 (177)
Q Consensus        89 l~~i~~~~~~~~~~ViPVfy~v~psdv~~q~g~f~~~f~~~~~~~~~~e~v~~W~~AL~~v  149 (177)
                      |..++++..+++++||||||+++|++|++|.|.||+.|.....    ...+.++-+.|.++
T Consensus        95 l~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~----~~~~~~ia~~l~~l  151 (154)
T 3h16_A           95 LDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTS----TKSVDEIVADLMAI  151 (154)
T ss_dssp             HHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEETT----TSCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhcC----cccHHHHHHHHHHH
Confidence            9999998877888999999999999999999999998865443    33455555555544

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A

Probab=99.96  E-value=2.4e-31  Score=201.73  Aligned_cols=138  Identities=14%  Similarity=0.260  Sum_probs=93.0

Q ss_pred             CCCCCCeeeEEEecccCCCccchHHHHHHHHhc--CCcEEEEeCCcccCCccccHHHHhccccCcEEEEEeeccccCChh
Q 044147            7 NLNAQSKFDVFLSFRGEDTRTGFTSHVVEALRR--KQIQFFIDDEELQRGEEISPALLSAIETSDISIIIFSENYASSTW   84 (177)
Q Consensus         7 s~~~~~~ydVFIS~~~~D~r~~fv~~L~~~L~~--~gi~~f~d~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~~y~~S~w   84 (177)
                      |....+.|||||||+++|+  .||.+|+.+|++  .|+++|++++++.+|+.+.++|.++|++|+++|+|+||+|++|.|
T Consensus         4 ~~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~w   81 (146)
T 3ub2_A            4 SSRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPW   81 (146)
T ss_dssp             CCTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHH
T ss_pred             CCCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHH
Confidence            3456789999999999995  689999999998  599999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhhhccCCceEEeEEeecCchhhhcccCcH-HHHHhhhhhcCC-ChhHHHHHHHHH
Q 044147           85 CLDELVRILDCKKRNGQIVVPVFYKVDPSDVRKQMGSF-GEAFVHHERNFP-CEVRVQKWRDSL  146 (177)
Q Consensus        85 c~~El~~i~~~~~~~~~~ViPVfy~v~psdv~~q~g~f-~~~f~~~~~~~~-~~e~v~~W~~AL  146 (177)
                      |+.|+..++.+...+..+||||||+++++++......+ ...+..+...|. ..+.|.+|+.||
T Consensus        82 c~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~~~d~~f~~l~~~v~~~~~~~  145 (146)
T 3ub2_A           82 CKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQVKEAVMRYLQTL  145 (146)
T ss_dssp             HHHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEETTSGGGGHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeeccChHhhHHHHHHHHHHHHHhc
Confidence            99999999998643344788999999866664322110 000011112221 356788888775

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A

Probab=99.93  E-value=9e-27  Score=178.90  Aligned_cols=103  Identities=17%  Similarity=0.349  Sum_probs=92.8

Q ss_pred             CCCCeeeEEEecccCCCccchHHHHHHHHhcC--CcEEEEeCCcccCCccccHHHHhccc-cCcEEEEEeeccccCChhh
Q 044147            9 NAQSKFDVFLSFRGEDTRTGFTSHVVEALRRK--QIQFFIDDEELQRGEEISPALLSAIE-TSDISIIIFSENYASSTWC   85 (177)
Q Consensus         9 ~~~~~ydVFIS~~~~D~r~~fv~~L~~~L~~~--gi~~f~d~~~l~~G~~i~~~i~~aI~-~S~~~IvV~S~~y~~S~wc   85 (177)
                      +.++.|||||||+++|  ..||.+|+.+|++.  |+++|+|++++.+|+.+.++|.++|+ +|+++|+|+||+|++|.||
T Consensus        12 ~~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc   89 (160)
T 2js7_A           12 HMPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKEC   89 (160)
T ss_dssp             CCTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHH
T ss_pred             CCCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHH
Confidence            3468899999999999  58999999999984  69999999999999999999999999 7999999999999999999


Q ss_pred             HHHHHHHHhhh-ccCCceEEeEEeecCch
Q 044147           86 LDELVRILDCK-KRNGQIVVPVFYKVDPS  113 (177)
Q Consensus        86 ~~El~~i~~~~-~~~~~~ViPVfy~v~ps  113 (177)
                      +.|+..++++. .+++++||||+|+..+.
T Consensus        90 ~~El~~a~~~~~~~~~~~vIpV~~~~~~~  118 (160)
T 2js7_A           90 DFQTKFALSLSPGAHQKRLIPIKYKAMKK  118 (160)
T ss_dssp             HHHHHHHHHHCTTHHHHTEEEEESSCCCC
T ss_pred             HHHHHHHHHHHHccCCCEEEEEEEcccch
Confidence            99999999875 34567899999976543

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A

Probab=99.93  E-value=4.6e-27  Score=178.43  Aligned_cols=105  Identities=18%  Similarity=0.363  Sum_probs=93.2

Q ss_pred             CCCeeeEEEecccCCCccchHHH-HHHHHhcC--CcEEEEeCCcccCCccccHHHHhccccCcEEEEEeeccccCChhhH
Q 044147           10 AQSKFDVFLSFRGEDTRTGFTSH-VVEALRRK--QIQFFIDDEELQRGEEISPALLSAIETSDISIIIFSENYASSTWCL   86 (177)
Q Consensus        10 ~~~~ydVFIS~~~~D~r~~fv~~-L~~~L~~~--gi~~f~d~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~~y~~S~wc~   86 (177)
                      .++.|||||||+++|+  .||.+ |+.+|++.  |+++|+|++++.+|+.+.++|.++|++|+++|+|+||+|++|.||+
T Consensus         2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~   79 (149)
T 1fyx_A            2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK   79 (149)
T ss_dssp             CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred             CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence            4678999999999994  79986 99999986  9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhh-hccCCceEEeEEee-cCchhhh
Q 044147           87 DELVRILDC-KKRNGQIVVPVFYK-VDPSDVR  116 (177)
Q Consensus        87 ~El~~i~~~-~~~~~~~ViPVfy~-v~psdv~  116 (177)
                      .|+..++++ .++++.+||||||+ +.+..+.
T Consensus        80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~p  111 (149)
T 1fyx_A           80 YELDFSHFRLFDENNDAAILILLEPIEKKAIP  111 (149)
T ss_dssp             HHSCCSCCTTCGGGTTCCEEEESSCCCTTTSC
T ss_pred             HHHHHHHHHHHhcCCCEEEEEEecCCChhhcC
Confidence            999999864 45567789999995 4444443

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A

Probab=99.92  E-value=2.3e-26  Score=179.56  Aligned_cols=102  Identities=22%  Similarity=0.406  Sum_probs=88.2

Q ss_pred             CCCCCeeeEEEecccCCCccchHHH-HHHHHhc--CCcEEEEeCCcccCCccccHHHHhccccCcEEEEEeeccccCChh
Q 044147            8 LNAQSKFDVFLSFRGEDTRTGFTSH-VVEALRR--KQIQFFIDDEELQRGEEISPALLSAIETSDISIIIFSENYASSTW   84 (177)
Q Consensus         8 ~~~~~~ydVFIS~~~~D~r~~fv~~-L~~~L~~--~gi~~f~d~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~~y~~S~w   84 (177)
                      ...++.|||||||+++|+  .||.. |+.+|++  .|+++|+|++++.+|+.+.++|.++|++|+++|+|+||+|++|.|
T Consensus        30 ~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w  107 (178)
T 2j67_A           30 LKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW  107 (178)
T ss_dssp             CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred             cCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence            456789999999999994  89975 9999998  899999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhhh-ccCCceEEeEEeecC
Q 044147           85 CLDELVRILDCK-KRNGQIVVPVFYKVD  111 (177)
Q Consensus        85 c~~El~~i~~~~-~~~~~~ViPVfy~v~  111 (177)
                      |+.|+..++.+. ++++++||||||+..
T Consensus       108 c~~El~~a~~~~~~~~~~~vIpV~~~~i  135 (178)
T 2j67_A          108 CHYEFYFAHHNLFHENSDHIILILLEPI  135 (178)
T ss_dssp             GGTHHHHTTCC-------CEEEEESSCC
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEEEecCC
Confidence            999999999754 456779999999643

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}

Probab=99.92  E-value=5.3e-26  Score=174.43  Aligned_cols=102  Identities=20%  Similarity=0.300  Sum_probs=91.1

Q ss_pred             CeeeEEEecccCCC---------ccchHHHHHH-HHh-cCCcEEEEeCCcccCCccccHHHHhccccCcEEEEEeecccc
Q 044147           12 SKFDVFLSFRGEDT---------RTGFTSHVVE-ALR-RKQIQFFIDDEELQRGEEISPALLSAIETSDISIIIFSENYA   80 (177)
Q Consensus        12 ~~ydVFIS~~~~D~---------r~~fv~~L~~-~L~-~~gi~~f~d~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~~y~   80 (177)
                      +.|||||||+++|+         ++.||.+|.. .|+ +.|+++|+|++++.+|+.+.++|.++|++|+.+|+|+||+|+
T Consensus         1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~   80 (159)
T 1t3g_A            1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV   80 (159)
T ss_dssp             CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred             CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence            47999999999996         4679988776 699 799999999999999999999999999999999999999997


Q ss_pred             -CChhhHHHHHHHHhhh-ccCCceEEeEEeecCch
Q 044147           81 -SSTWCLDELVRILDCK-KRNGQIVVPVFYKVDPS  113 (177)
Q Consensus        81 -~S~wc~~El~~i~~~~-~~~~~~ViPVfy~v~ps  113 (177)
                       .|.||+.|+..++.+. .+++.+||||+|...+.
T Consensus        81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~  115 (159)
T 1t3g_A           81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELRG  115 (159)
T ss_dssp             HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred             hcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence             9999999999999885 56678999999875554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.77  E-value=1.9e-19  Score=167.06  Aligned_cols=103  Identities=16%  Similarity=0.308  Sum_probs=92.4

Q ss_pred             CCCCeeeEEEecccCCCccchH-HHHHHHHhc-----CCcEEEEeCCcccCCccccHHHHhccccCcEEEEEeeccccCC
Q 044147            9 NAQSKFDVFLSFRGEDTRTGFT-SHVVEALRR-----KQIQFFIDDEELQRGEEISPALLSAIETSDISIIIFSENYASS   82 (177)
Q Consensus         9 ~~~~~ydVFIS~~~~D~r~~fv-~~L~~~L~~-----~gi~~f~d~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~~y~~S   82 (177)
                      ...+.|||||||+++|.  .|| ..|...|+.     .|+++|++++++.||+.+.++|.++|++|+.+|+|+|++|+.|
T Consensus       666 ~~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s  743 (844)
T 3j0a_A          666 PDMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRD  743 (844)
T ss_dssp             SSCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHH
T ss_pred             ccceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccC
Confidence            35689999999999994  677 789999985     5899999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHhhh-ccCCceEEeEEeecCch
Q 044147           83 TWCLDELVRILDCK-KRNGQIVVPVFYKVDPS  113 (177)
Q Consensus        83 ~wc~~El~~i~~~~-~~~~~~ViPVfy~v~ps  113 (177)
                      .||..|+..++.+. ++++.+||||||+..|.
T Consensus       744 ~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~~  775 (844)
T 3j0a_A          744 GWCLEAFSYAQGRCLSDLNSALIMVVVGSLSQ  775 (844)
T ss_dssp             TSTTHHHHHHHSCCCCSSCTTEEEEESSCCCS
T ss_pred             hHHHHHHHHHHHHHHHhcCCcEEEEEeccCCh
Confidence            99999999998775 56778999999975543

>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1

Probab=98.23  E-value=2.3e-06  Score=61.39  Aligned_cols=73  Identities=10%  Similarity=0.095  Sum_probs=53.5

Q ss_pred             CeeeEEEecccCCCccchHHHHHHHHhcCCcEEEEeCCcccCCccccHHHHhccccCcEEEEEeeccccCChhhHHHHHH
Q 044147           12 SKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIETSDISIIIFSENYASSTWCLDELVR   91 (177)
Q Consensus        12 ~~ydVFIS~~~~D~r~~fv~~L~~~L~~~gi~~f~d~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~~y~~S~wc~~El~~   91 (177)
                      .+|.|||||+.+|.    ...|...|.+.|+.. .|               +.|+.|.+.|++.++....|+||..|+..
T Consensus         3 ~~~~lFISh~~~d~----~~~L~~~l~~~~f~~-~~---------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~   62 (111)
T 1eiw_A            3 AEIRLYITEGEVED----YRVFLERLEQSGLEW-RP---------------ATPEDADAVIVLAGLWGTRRDEILGAVDL   62 (111)
T ss_dssp             CCEEEEECCCCSHH----HHHHHHHHHHHCSCE-EE---------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHH
T ss_pred             ceEEEEEecccHhH----HHHHHHHHhCCCCee-ec---------------CccccCCEEEEEeCCCcCCChHHHHHHHH
Confidence            47999999999982    333333343444432 22               78999999999999999999999999988


Q ss_pred             HHhhhccCCceEEeEEe
Q 044147           92 ILDCKKRNGQIVVPVFY  108 (177)
Q Consensus        92 i~~~~~~~~~~ViPVfy  108 (177)
                      +.+.    +.+||-|.-
T Consensus        63 A~~~----gkpIigV~~   75 (111)
T 1eiw_A           63 ARKS----SKPIITVRP   75 (111)
T ss_dssp             HTTT----TCCEEEECC
T ss_pred             HHHc----CCCEEEEEc
Confidence            7653    446777753

>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}

Probab=96.88  E-value=0.0033  Score=48.56  Aligned_cols=96  Identities=18%  Similarity=0.185  Sum_probs=65.6

Q ss_pred             ccCCCccchHHHHHHHHhcCCcEEEEeCCcc----cC----CccccHHHHhccccCcEEEEEeeccccCChhhHHHHHHH
Q 044147           21 RGEDTRTGFTSHVVEALRRKQIQFFIDDEEL----QR----GEEISPALLSAIETSDISIIIFSENYASSTWCLDELVRI   92 (177)
Q Consensus        21 ~~~D~r~~fv~~L~~~L~~~gi~~f~d~~~l----~~----G~~i~~~i~~aI~~S~~~IvV~S~~y~~S~wc~~El~~i   92 (177)
                      ..+|  ..+...|..--.+..+-.|.|-.+.    .-    -..|...|.+.|+.|+.+|+++|++...|.|...|+..+
T Consensus        27 a~~D--i~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~A  104 (189)
T 3hyn_A           27 STHD--FVYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYG  104 (189)
T ss_dssp             GSTT--HHHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred             ccch--HHHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHH
Confidence            4455  3455556555555566667775433    22    235778899999999999999999999999999999998


Q ss_pred             HhhhccCCceEEeEEeecC-chhhhcccCc
Q 044147           93 LDCKKRNGQIVVPVFYKVD-PSDVRKQMGS  121 (177)
Q Consensus        93 ~~~~~~~~~~ViPVfy~v~-psdv~~q~g~  121 (177)
                      ++.   .+.+||-|..+-. .+++..-.|.
T Consensus       105 i~~---~~~PII~Vy~~~~~~~~i~~~~g~  131 (189)
T 3hyn_A          105 IGT---KGLPVIVIYPDYDKKSDIVDSNGN  131 (189)
T ss_dssp             TTT---TCCCEEEEETTCCSGGGTBCTTSC
T ss_pred             HHh---cCCcEEEEECCccccchhhhcccc
Confidence            722   3458888876522 3344433343

>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*

Probab=88.63  E-value=1.3  Score=33.04  Aligned_cols=86  Identities=14%  Similarity=0.080  Sum_probs=57.5

Q ss_pred             CeeeEEEecc--cCCCccchHHHHHHHHhcCCcEEEEeCCccc-CCccccHHHHhccccCcEEEEEeec--cccCChhhH
Q 044147           12 SKFDVFLSFR--GEDTRTGFTSHVVEALRRKQIQFFIDDEELQ-RGEEISPALLSAIETSDISIIIFSE--NYASSTWCL   86 (177)
Q Consensus        12 ~~ydVFIS~~--~~D~r~~fv~~L~~~L~~~gi~~f~d~~~l~-~G~~i~~~i~~aI~~S~~~IvV~S~--~y~~S~wc~   86 (177)
                      ..-.+++.-.  ..+....+...+.+.|++.|+.+|...++-. .+..+...-.++|++|++.|++++|  .-..+.-+.
T Consensus         9 ~~~~~y~a~~~F~~~e~~~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTa   88 (161)
T 2f62_A            9 MRKIYIAGPAVFNPDMGASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTA   88 (161)
T ss_dssp             CCEEEEESGGGGSTTTTHHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHH
T ss_pred             hhceEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHH
Confidence            3445555532  2332037889999999999999988543211 2234444557899999999999996  333445588


Q ss_pred             HHHHHHHhhhc
Q 044147           87 DELVRILDCKK   97 (177)
Q Consensus        87 ~El~~i~~~~~   97 (177)
                      .|+..+....+
T Consensus        89 fEiGyA~AlgK   99 (161)
T 2f62_A           89 FEVGCAAALNK   99 (161)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHCCC
Confidence            89998877644

>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*

Probab=80.80  E-value=5.2  Score=29.57  Aligned_cols=79  Identities=25%  Similarity=0.329  Sum_probs=51.8

Q ss_pred             eEEEe--cccCCCccchHHHHHHHHhcCCcEEEEe---CCcc-cCCc-------cccHHHHhccccCcEEEEEeeccccC
Q 044147           15 DVFLS--FRGEDTRTGFTSHVVEALRRKQIQFFID---DEEL-QRGE-------EISPALLSAIETSDISIIIFSENYAS   81 (177)
Q Consensus        15 dVFIS--~~~~D~r~~fv~~L~~~L~~~gi~~f~d---~~~l-~~G~-------~i~~~i~~aI~~S~~~IvV~S~~y~~   81 (177)
                      .|||+  +++.+....+...+.+.|++.| .|+..   ..++ ..|+       .+...-.++|++|++.|.+++   ..
T Consensus         4 kIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~~   79 (152)
T 4fyk_A            4 SVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---QP   79 (152)
T ss_dssp             EEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---SC
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---CC
Confidence            46665  3343323478899999999999 67532   1111 1122       245566678999999999988   55


Q ss_pred             ChhhHHHHHHHHhhhc
Q 044147           82 STWCLDELVRILDCKK   97 (177)
Q Consensus        82 S~wc~~El~~i~~~~~   97 (177)
                      +.-...|+..+....+
T Consensus        80 d~Gt~~EiG~A~algk   95 (152)
T 4fyk_A           80 SLGVGYELGRAVALGK   95 (152)
T ss_dssp             CHHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHcCC
Confidence            6778889999877543

>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}

Probab=80.09  E-value=4.2  Score=30.32  Aligned_cols=76  Identities=16%  Similarity=0.200  Sum_probs=52.8

Q ss_pred             cchHHHHHHHHhcC--CcEEEEeCCccc----CCc----cccHHHHhccccCcEEEEEeeccccCChhhHHHHHHHHhhh
Q 044147           27 TGFTSHVVEALRRK--QIQFFIDDEELQ----RGE----EISPALLSAIETSDISIIIFSENYASSTWCLDELVRILDCK   96 (177)
Q Consensus        27 ~~fv~~L~~~L~~~--gi~~f~d~~~l~----~G~----~i~~~i~~aI~~S~~~IvV~S~~y~~S~wc~~El~~i~~~~   96 (177)
                      ..+...+.++|+..  |+.+|...++-.    ++.    .+...-.++|++|++.|.++. ....+..+..|+..+....
T Consensus        19 ~~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ld-g~~~D~Gt~~EiG~A~a~g   97 (162)
T 3ehd_A           19 LRYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLD-GPTIDAGVASEIGVAYAKG   97 (162)
T ss_dssp             HHHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECC-SSSCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECC-CCCCCCCHHHHHHHHHHCC
Confidence            46788899999875  899988543321    222    234444567999999999995 3346788899999988754


Q ss_pred             ccCCceEEeEE
Q 044147           97 KRNGQIVVPVF  107 (177)
Q Consensus        97 ~~~~~~ViPVf  107 (177)
                      +    +|+.+.
T Consensus        98 k----PVi~~~  104 (162)
T 3ehd_A           98 I----PVVALY  104 (162)
T ss_dssp             C----CEEEEC
T ss_pred             C----EEEEEE
Confidence            3    565553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	177
d1fyva_	161	c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (H	1e-21
d1fyxa_	149	c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (H	1e-18

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.0 bits (207), Expect = 1e-21
 Identities = 24/133 (18%), Positives = 51/133 (38%), Gaps = 4/133 (3%)

Query: 13  KFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIETSDISI 72
           +F  F+S+ G D+     + ++  L ++ +Q  + +     G+ I   +++ IE S  SI
Sbjct: 12  QFHAFISYSGHDSFW-VKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSI 70

Query: 73  IIFSENYASSTWCLDELVRILDCK-KRNGQIVVPVFYKVDPSDVRKQMGSFGEAFVHHER 131
            + S N+  S WC  EL              ++ +  +  P           ++ +    
Sbjct: 71  FVLSPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLEPIPQYSIPSSYHKLKSLMARRT 130

Query: 132 --NFPCEVRVQKW 142
              +P E   +  
Sbjct: 131 YLEWPKEKSKRGL 143

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.9 bits (186), Expect = 1e-18
 Identities = 22/135 (16%), Positives = 49/135 (36%), Gaps = 6/135 (4%)

Query: 13  KFDVFLSFRGEDTRTGFTSHVVEAL--RRKQIQFFIDDEELQRGEEISPALLSAIETSDI 70
            +D F+S+   D      + +V+ L       +  +   +   G+ I   ++ +IE S  
Sbjct: 5   CYDAFVSYSERDAYW-VENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHK 63

Query: 71  SIIIFSENYASSTWCLDELVRILD-CKKRNGQIVVPVFYKVDPSDVRKQMGSFGEAFVHH 129
           ++ + SEN+  S WC  EL          N    + +  +        Q        ++ 
Sbjct: 64  TVFVLSENFVKSEWCKYELDFSHFRLFDENNDAAILILLEPIEKKAIPQRFCKLRKIMNT 123

Query: 130 ER--NFPCEVRVQKW 142
           +    +P +   ++ 
Sbjct: 124 KTYLEWPMDEAQREG 138

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	177
d1fyva_	161	Toll-like receptor 1, TLR1 {Human (Homo sapiens) [	99.9
d1fyxa_	149	Toll-like receptor 2, TLR2 {Human (Homo sapiens) [	99.89
d1wu7a1	97	Histidyl-tRNA synthetase (HisRS), C-terminal domai	93.86
d2f62a1	152	Nucleoside 2-deoxyribosyltransferase {Trypanosoma	89.06
d1s2da_	167	Purine transdeoxyribosylase {Lactobacillus helveti	85.81
d1qe0a1	95	Histidyl-tRNA synthetase (HisRS), C-terminal domai	82.74
d1atia1	111	Glycyl-tRNA synthetase (GlyRS), C-terminal domain	81.26

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=9.3e-25  Score=165.62  Aligned_cols=104  Identities=22%  Similarity=0.458  Sum_probs=93.4

Q ss_pred             CCCCCCeeeEEEecccCCCccchH-HHHHHHHhcCCcEEEEeCCcccCCccccHHHHhccccCcEEEEEeeccccCChhh
Q 044147            7 NLNAQSKFDVFLSFRGEDTRTGFT-SHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIETSDISIIIFSENYASSTWC   85 (177)
Q Consensus         7 s~~~~~~ydVFIS~~~~D~r~~fv-~~L~~~L~~~gi~~f~d~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~~y~~S~wc   85 (177)
                      ....+++|||||||+++|  ..|| ..|...|+++|+++|+|++++.+|+.+.++|.++|++|+++|+|+||+|..|.||
T Consensus         6 ~~~~~~~yDvFisys~~D--~~~v~~~L~~~Le~~g~~v~~d~~d~~~G~~~~~~i~~~i~~s~~~i~vlS~~~~~s~w~   83 (161)
T d1fyva_           6 ELQRNLQFHAFISYSGHD--SFWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQSEWC   83 (161)
T ss_dssp             TSSSCCCEEEEEECCGGG--HHHHHHTHHHHHHTTTCCEECTTTTCCTTSCHHHHHHHHHHHEEEEEEEESHHHHHHTSH
T ss_pred             HcCCCCeeEEEEecChhH--HHHHHHHHHHHHHhCCCcceEeccccccccccHHHHHHHHHhCCEEEEEecCccccChHH
Confidence            345688999999999999  4677 5799999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhh-ccCCceEEeEEeecCc
Q 044147           86 LDELVRILDCK-KRNGQIVVPVFYKVDP  112 (177)
Q Consensus        86 ~~El~~i~~~~-~~~~~~ViPVfy~v~p  112 (177)
                      ..|+..++++. +++..++|||+++..|
T Consensus        84 ~~E~~~a~~~~~~~~~~~lIpV~l~~~~  111 (161)
T d1fyva_          84 HYELYFAHHNLFHEGSNSLILILLEPIP  111 (161)
T ss_dssp             HHHHHTTSCCCSCSSCSSEEEEESSCCC
T ss_pred             HHHHHHHHHHHHHcCCCceeEEEEecCc
Confidence            99999998875 4456789999997444

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.2e-24  Score=163.08  Aligned_cols=102  Identities=20%  Similarity=0.365  Sum_probs=90.1

Q ss_pred             CCCCeeeEEEecccCCCccchH-HHHHHHHhc--CCcEEEEeCCcccCCccccHHHHhccccCcEEEEEeeccccCChhh
Q 044147            9 NAQSKFDVFLSFRGEDTRTGFT-SHVVEALRR--KQIQFFIDDEELQRGEEISPALLSAIETSDISIIIFSENYASSTWC   85 (177)
Q Consensus         9 ~~~~~ydVFIS~~~~D~r~~fv-~~L~~~L~~--~gi~~f~d~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~~y~~S~wc   85 (177)
                      |+++.|||||||+++|  ..|| ..|...|++  .|+++|+|++++.+|+.+.++|.++|++|+++|+|+||+|+.|.||
T Consensus         1 ~~~~~YDvFiSys~~D--~~~V~~~l~~~LE~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~S~~~i~vlS~~~l~s~wc   78 (149)
T d1fyxa_           1 SRNICYDAFVSYSERD--AYWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWC   78 (149)
T ss_dssp             CCSCCEEEEEECCGGG--HHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTH
T ss_pred             CCCCEEEEEEECchhh--HHHHHHHHHHHHHhcCCCceEEEecccccccchHHHHHHHHHHhCCEEEEEEcCccccccch
Confidence            4678999999999999  4676 568999976  4999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhh-ccCCceEEeEEeecCc
Q 044147           86 LDELVRILDCK-KRNGQIVVPVFYKVDP  112 (177)
Q Consensus        86 ~~El~~i~~~~-~~~~~~ViPVfy~v~p  112 (177)
                      ..|+..++... ++++.++|||+++..|
T Consensus        79 ~~E~~~a~~~~~~~~~~~iIpV~l~~~~  106 (149)
T d1fyxa_          79 KYELDFSHFRLFDENNDAAILILLEPIE  106 (149)
T ss_dssp             HHHSCCSCCTTCGGGTTCCEEEESSCCC
T ss_pred             HHHHHHHHHHHHHcCCceEEEEEeccCc
Confidence            99999887654 4567799999997433

>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=93.86  E-value=0.058  Score=35.05  Aligned_cols=62  Identities=18%  Similarity=0.215  Sum_probs=46.4

Q ss_pred             CeeeEEEecccCCCccchHHHHHHHHhcCCcEEEEeCCcccCCccccHHHHhccccCcEEEEEeecc
Q 044147           12 SKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIETSDISIIIFSEN   78 (177)
Q Consensus        12 ~~ydVFIS~~~~D~r~~fv~~L~~~L~~~gi~~f~d~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~~   78 (177)
                      ...+|||..-++.. ..++..|...|++.||++.+|..    +..+...+..|-..---+++|+.++
T Consensus         2 ~~~~V~i~~~g~~~-~~~~~~l~~~Lr~~gi~v~~d~~----~~~l~kq~~~A~~~~~~~~iiiG~~   63 (97)
T d1wu7a1           2 EKKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEIM----ERGLSAQLKYASAIGADFAVIFGER   63 (97)
T ss_dssp             SSCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECCS----CCCHHHHHHHHHHTTCSEEEEEEHH
T ss_pred             CCceEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEECC----CCcHHHHHHHHHhcCCCeEEecCCc
Confidence            35799999988886 57899999999999999999864    4456666766655444455555554

>d2f62a1 c.23.14.1 (A:9-160) Nucleoside 2-deoxyribosyltransferase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Nucleoside 2-deoxyribosyltransferase
species: Trypanosoma brucei [TaxId: 5691]

Probab=89.06  E-value=0.53  Score=33.11  Aligned_cols=74  Identities=18%  Similarity=0.147  Sum_probs=54.6

Q ss_pred             CCccchHHHHHHHHhcCCcEEEEeCC-cccCCccccHHHHhccccCcEEEEEeecc--ccCChhhHHHHHHHHhhhc
Q 044147           24 DTRTGFTSHVVEALRRKQIQFFIDDE-ELQRGEEISPALLSAIETSDISIIIFSEN--YASSTWCLDELVRILDCKK   97 (177)
Q Consensus        24 D~r~~fv~~L~~~L~~~gi~~f~d~~-~l~~G~~i~~~i~~aI~~S~~~IvV~S~~--y~~S~wc~~El~~i~~~~~   97 (177)
                      |.+..+...+...|+..|+.++.-.+ .......|...-.++|++|++.|++++|-  -..++=+..|+..+....+
T Consensus        15 d~~~~~~~~i~~~l~~~g~~~~~P~d~~~~~~~~If~~d~~~i~~~D~VIA~Ld~frg~~~D~GTa~EiG~A~algK   91 (152)
T d2f62a1          15 DMGASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNK   91 (152)
T ss_dssp             TTTHHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHCCCEEeccccccchhHHHHHHHHHHHHHhCCEEEEEccccCCCCCCchHHHHHHHHHHCCC
Confidence            33457889999999999999987433 22333446666778899999999999852  2345668899999987654

>d1s2da_ c.23.14.1 (A:) Purine transdeoxyribosylase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Purine transdeoxyribosylase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=85.81  E-value=2  Score=30.15  Aligned_cols=88  Identities=13%  Similarity=0.160  Sum_probs=57.0

Q ss_pred             eeeEEEe---cccCCCccchHHHHHHHHhcCC--cEEEEeCCcc---------cCC--------ccccHHHHhccccCcE
Q 044147           13 KFDVFLS---FRGEDTRTGFTSHVVEALRRKQ--IQFFIDDEEL---------QRG--------EEISPALLSAIETSDI   70 (177)
Q Consensus        13 ~ydVFIS---~~~~D~r~~fv~~L~~~L~~~g--i~~f~d~~~l---------~~G--------~~i~~~i~~aI~~S~~   70 (177)
                      +..|||+   |+..  ...+...+.++|++.|  +.+|...++-         +-+        ..+...-.++|++|++
T Consensus         7 ~~kIYLAgP~F~~~--~~~~~~~~~~~L~~~~~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~If~~D~~~i~~sD~   84 (167)
T d1s2da_           7 TGKIYLGSPFYSDA--QRERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATC   84 (167)
T ss_dssp             CEEEEEECCCSSHH--HHHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSE
T ss_pred             CceEEEECCCCCHH--HHHHHHHHHHHHHhCCCcceEECCcccccccccccccccccccchHHHHHHHHHHHHHHHHCCE
Confidence            4567776   3322  2568899999999988  5676532210         001        1133344578999999


Q ss_pred             EEEEeeccccCChhhHHHHHHHHhhhccCCceEEeEE
Q 044147           71 SIIIFSENYASSTWCLDELVRILDCKKRNGQIVVPVF  107 (177)
Q Consensus        71 ~IvV~S~~y~~S~wc~~El~~i~~~~~~~~~~ViPVf  107 (177)
                      .|+++...... .-...|+..+....+    +||-+-
T Consensus        85 vIA~ldg~~~D-~GTa~EiG~A~a~gK----Pvi~~~  116 (167)
T d1s2da_          85 GVFLYDMDQLD-DGSAFEIGFMRAMHK----PVILVP  116 (167)
T ss_dssp             EEEEEESSSCC-HHHHHHHHHHHHTTC----CEEEEE
T ss_pred             EEEEeCCCCCC-ccHHHHHHHHHHCCC----eEEEEe
Confidence            99999887654 447789999887654    565554

>d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=82.74  E-value=0.48  Score=30.07  Aligned_cols=60  Identities=17%  Similarity=0.252  Sum_probs=43.0

Q ss_pred             eeeEEEecccCCCccchHHHHHHHHhcCCcEEEEeCCcccCCccccHHHHhccccCcEEEEEeec
Q 044147           13 KFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIETSDISIIIFSE   77 (177)
Q Consensus        13 ~ydVFIS~~~~D~r~~fv~~L~~~L~~~gi~~f~d~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~   77 (177)
                      ..||||.--+++. ...+..|...|++.|+++-+|..    +..+...+..|-+.---+++|+.+
T Consensus         4 ~~dv~ii~~~~~~-~~~a~~i~~~Lr~~gi~v~~d~~----~~~l~kq~~~A~~~~~~~~iiiG~   63 (95)
T d1qe0a1           4 NLDLFIVTMGDQA-DRYAVKLLNHLRHNGIKADKDYL----QRKIKGQMKQADRLGAKFTIVIGD   63 (95)
T ss_dssp             CCSEEEEECHHHH-HHHHHHHHHHHHTTTCCEEECCS----CCCHHHHHHHHHHTTCSEEEEECH
T ss_pred             CCeEEEEEeCHHH-HHHHHHHHHHHHHCCCcEEecCC----CCCHHHHHHHHHhcCCCEEEEEcc
Confidence            4789998766654 57889999999999999999864    345666666665544445555554

>d1atia1 c.51.1.1 (A:395-505) Glycyl-tRNA synthetase (GlyRS), C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Glycyl-tRNA synthetase (GlyRS), C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=81.26  E-value=0.29  Score=32.45  Aligned_cols=51  Identities=6%  Similarity=-0.018  Sum_probs=36.6

Q ss_pred             cchHHHHHHHHhcCCcEEEEeCCcccCCccccHHHHhccccCcEEEEEeeccccC
Q 044147           27 TGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIETSDISIIIFSENYAS   81 (177)
Q Consensus        27 ~~fv~~L~~~L~~~gi~~f~d~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~~y~~   81 (177)
                      ..++..|+..|...||++.+|+++..+|..+.+.-..++   . .++++.++-..
T Consensus        20 ~~~a~~l~~~L~~~gi~v~~Ddr~~~~G~K~~~~~~~gv---P-~~iiIG~kel~   70 (111)
T d1atia1          20 TEYAKRLKARLLALGLGRVLYEDTGNIGKAYRRHDEVGT---P-FAVTVDYDTIG   70 (111)
T ss_dssp             HHHHHHHHHHHHTTCSSCEEECCCSCHHHHHHHHHHTTC---S-EEEEECHHHHT
T ss_pred             HHHHHHHHhhhccccceeEeecCCCCHHHHHHHHHHcCC---C-EEEEECcHHhh
Confidence            578999999999999999999987777777665433332   2 55555555443