Citrus Sinensis ID: 044157

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-
MSALLSCMQIPTLLIPSISSSSSSREKKHHQCIQIPTHSLKHQLHSQSPTPRVIKCFSNRQSQSTEQEFEFEFERLFSNLNQATLKRESGSLSSAIFLVAGTTVGAGILAIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMRTIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLGIPLWESATLFSLILGGLCYFGSQRFIGAANGALVVGIIISFTALVFVASGDLQWNALLKANFEAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVVGTSIPLGLFLVWNAVILGSISGLEMSSGQIVDPIQQLRSSNGAVGPIIDVFSFLAIATSYIGFILGLSDFLADLLKLPSGQSSPQPYLLTLIPPLVLSLLDPEIFFKALDFAGTYGVLVLFGILPAVMSWSDRYSSSSPSMTIPRIVPGGKLTLSLVIGVAGYIILSEILEKFGLP
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHccccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHcccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEcHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEccHHHHHHHHHHHHHHHHHHHHHHHcccc
ccEEEEHcccccEEEcccccccccccccccccEEccccccccccccccccccEEEccHHHHcccccccHHHHHHHHHHHHHHccccccccccEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEccccHHHHHHHHHHHHHHHHHHHHHHcccc
msallscmqiptllipsissssssrekkhhqciqipthslkhqlhsqsptprvikcfsnrqsqstEQEFEFEFERLFSNLNQATLKRESGSLSSAIFLVAGTTVGAGILAIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMRTIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLGIPLWESATLFSLILGGlcyfgsqrfigAANGALVVGIIISFTALVFVASGDLQWNALLKANFeavpmsipIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVVGTSIPLGLFLVWNAVILGSIsglemssgqivdpiqqlrssngavgpiIDVFSFLAIATSYIGFILGLSDFLADLlklpsgqsspqpylltlipplvlslldpeIFFKALDFAGTYGVLVLFGILPAvmswsdrysssspsmtiprivpggklTLSLVIGVAGYIILSEILEKFGLP
msallscmqiptllipsisssssSREKKHHQCIQIpthslkhqlhsqSPTPRVIKCFSNRQSQSTEQEFEFEFERLFSNLNQATLKRESGSLSSAIFLVAGTTVGAGILAIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMRTIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLGIPLWESATLFSLILGGLCYFGSQRFIGAANGALVVGIIISFTALVFVASGDLQWNALLKANFEAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVVGTSIPLGLFLVWNAVILGSISGLEMSSGQIVDPIQQLRSSNGAVGPIIDVFSFLAIATSYIGFILGLSDFLADLLKLPSGQSSPQPYLLTLIPPLVLSLLDPEIFFKALDFAGTYGVLVLFGILPAVMSWSDRYSSSSPSMTIPRIVPGGKLTLSLVIGVAGYIILSEILEKFGLP
MSALLSCMQIPTLLIPsissssssREKKHHQCIQIPTHSLKHQLHSQSPTPRVIKCFSNRqsqsteqefefefeRLFSNLNQATLKRESGSLSSAIFLVAGTTVGAGILAIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMRTIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLGIPLWESATLFSLILGGLCYFGSQRFIGAANGALVVGIIISFTALVFVASGDLQWNALLKANFEAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVVGTSIPLGLFLVWNAVILGSISGLEMSSGQIVDPIQQLRSSNGAVGPIIDVFSFLAIATSYIGFILGLSDFLADLLKLPSGQSSPQpylltlipplvlslldpEIFFKALDFAGTYGVLVLFGILPAVMswsdrysssspsMTIPRIVPGGKLTLSLVIGVAGYIILSEILEKFGLP
******CMQIPTLLI*******************************************************FEFERLFSNLNQ*********LSSAIFLVAGTTVGAGILAIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMRTIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLGIPLWESATLFSLILGGLCYFGSQRFIGAANGALVVGIIISFTALVFVASGDLQWNALLKANFEAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVVGTSIPLGLFLVWNAVILGSISGLEMSSGQIVDPIQQLRSSNGAVGPIIDVFSFLAIATSYIGFILGLSDFLADLLKLPS*****QPYLLTLIPPLVLSLLDPEIFFKALDFAGTYGVLVLFGILPAVMSWSDRY******MTIPRIVPGGKLTLSLVIGVAGYIILSEILEKF***
*******MQIPTL********************************************************************************SAIFLVAGTTVGAGILAIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMRTIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLGIPLWESATLFSLILGGLCYFGSQRFIGAANGALVVGIIISFTALVFVASGDLQWNALLKANFEAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVVGTSIPLGLFLVWNAVILGSISGLEMSSGQIVDPIQQLRSSNGAVGPIIDVFSFLAIATSYIGFILGLSDFLADLLKLPSGQSSPQPYLLTLIPPLVLSLLDPEIFFKALDFAGTYGVLVLFGILPAVMSWSDRYSSSSPSMTIPRIVPGGKLTLSLVIGVAGYIILSEILEKFGLP
MSALLSCMQIPTLLIPSI**************IQIPTHS**********TPRVIKCFS***********EFEFERLFSNLNQATLKRESGSLSSAIFLVAGTTVGAGILAIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMRTIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLGIPLWESATLFSLILGGLCYFGSQRFIGAANGALVVGIIISFTALVFVASGDLQWNALLKANFEAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVVGTSIPLGLFLVWNAVILGSISGLEMSSGQIVDPIQQLRSSNGAVGPIIDVFSFLAIATSYIGFILGLSDFLADLLKLPSGQSSPQPYLLTLIPPLVLSLLDPEIFFKALDFAGTYGVLVLFGILPAVMSWS*********MTIPRIVPGGKLTLSLVIGVAGYIILSEILEKFGLP
MSALLSCMQIPTLLIPSI******R*****QC*******LK****SQSPTPRVIKCFSNRQS***EQEFEFEFERLFSNLNQATLKRESGSLSSAIFLVAGTTVGAGILAIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMRTIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLGIPLWESATLFSLILGGLCYFGSQRFIGAANGALVVGIIISFTALVFVASGDLQWNALLKANFEAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVVGTSIPLGLFLVWNAVILGSISGLEMSSGQIVDPIQQLRSSNGAVGPIIDVFSFLAIATSYIGFILGLSDFLADLLKLPSGQSSPQPYLLTLIPPLVLSLLDPEIFFKALDFAGTYGVLVLFGILPAVMSWSDRYSSSSPSMTIPRIVPGGKLTLSLVIGVAGYIILSEILEKFGLP
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MSALLSCMQIPTLLIPSISSSSSSREKKHHQCIQIPTHSLKHQLHSQSPTPRVIKCFSNRQSQSTEQEFEFEFERLFSNLNQATLKRESGSLSSAIFLVAGTTVGAGILAIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMRTIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLGIPLWESATLFSLILGGLCYFGSQRFIGAANGALVVGIIISFTALVFVASGDLQWNALLKANFEAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVVGTSIPLGLFLVWNAVILGSISGLEMSSGQIVDPIQQLRSSNGAVGPIIDVFSFLAIATSYIGFILGLSDFLADLLKLPSGQSSPQPYLLTLIPPLVLSLLDPEIFFKALDFAGTYGVLVLFGILPAVMSWSDRYSSSSPSMTIPRIVPGGKLTLSLVIGVAGYIILSEILEKFGLP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query481 2.2.26 [Sep-21-2011]
P0AAD5403 Tyrosine-specific transpo yes no 0.690 0.823 0.298 3e-31
P0AAD4403 Tyrosine-specific transpo N/A no 0.690 0.823 0.298 3e-31
P44747406 Tyrosine-specific transpo yes no 0.746 0.884 0.301 1e-24
P44614418 Tryptophan-specific trans no no 0.765 0.880 0.261 3e-23
P44727400 Tyrosine-specific transpo no no 0.731 0.88 0.278 2e-21
P0AAD3414 Tryptophan-specific trans no no 0.742 0.862 0.279 1e-19
P0AAD2414 Tryptophan-specific trans N/A no 0.742 0.862 0.279 1e-19
Q47825416 Tyrosine permease OS=Ente N/A no 0.787 0.911 0.258 1e-19
P23173415 Low affinity tryptophan p N/A no 0.802 0.930 0.260 2e-17
Q8XB33415 Low affinity tryptophan p N/A no 0.802 0.930 0.258 2e-17
>sp|P0AAD5|TYRP_SHIFL Tyrosine-specific transport protein OS=Shigella flexneri GN=tyrP PE=3 SV=1 Back     alignment and function desciption
 Score =  136 bits (343), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 109/365 (29%), Positives = 188/365 (51%), Gaps = 33/365 (9%)

Query: 95  AIFLVAGTTVGAGILAIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGS 154
           ++F+VAGTT+GAG+LA+P      GF  + + +I  W  M  T LL+ EV  +   + G 
Sbjct: 8   SVFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGL 67

Query: 155 GGVSLVSMAMRTIGTVGVQIASWSYIFIHYTLLVAYVARSSDIL----TNFLGIPLWESA 210
           G     ++A R +G  G  +  +S +F+ Y L  AY++ + ++L    +++ GI +  +A
Sbjct: 68  G-----TLAKRYLGRYGQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGISMSATA 122

Query: 211 --TLFSLILGGLCYFGSQRFIGAANGALVVGIIISFTALVFVASGDLQWNALLKANFEAV 268
              LF+ + GG+   G+   +   N  L    II    ++ +    +      K N   +
Sbjct: 123 GVLLFTFVAGGVVCVGTS-LVDLFNRFLFSAKIIFLVVMLVLLLPHIH-----KVNLLTL 176

Query: 269 PM-------SIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVVGTSIPLGLFLVWNAVI 321
           P+       +IP+I  SF +   VP + + ++GN+ K+R   ++G++IPL  ++ W    
Sbjct: 177 PLQQGLALSAIPVIFTSFGFHGSVPSIVSYMDGNIRKLRWVFIIGSAIPLVAYIFWQVAT 236

Query: 322 LGSIS-----GLEMSSGQIVDPIQQLRS--SNGAVGPIIDVFSFLAIATSYIGFILGLSD 374
           LGSI      GL  +   +   +Q LR   ++  V   + +F+ LA+ATS++G  LGL D
Sbjct: 237 LGSIDSTTFMGLLANHAGLNGLLQALREMVASPHVELAVHLFADLALATSFLGVALGLFD 296

Query: 375 FLADLLKLPSGQSSP-QPYLLTLIPPLVLSLLDPEIFFKALDFAGTYGVLVLFGILPAVM 433
           +LADL +  +      Q   +T +PPL  +L  P  F  AL +AG   + VL  I+P+++
Sbjct: 297 YLADLFQRSNTVGGRLQTGAITFLPPLAFALFYPRGFVMALGYAGV-ALAVLALIIPSLL 355

Query: 434 SWSDR 438
           +W  R
Sbjct: 356 TWQSR 360
Involved in transporting tyrosine across the cytoplasmic membrane.
Shigella flexneri (taxid: 623)
>sp|P0AAD4|TYRP_ECOLI Tyrosine-specific transport protein OS=Escherichia coli (strain K12) GN=tyrP PE=1 SV=1 Back     alignment and function description
>sp|P44747|TYRPB_HAEIN Tyrosine-specific transport protein 2 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=tyrP-B PE=3 SV=1 Back     alignment and function description
>sp|P44614|MTR_HAEIN Tryptophan-specific transport protein OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=mtr PE=3 SV=1 Back     alignment and function description
>sp|P44727|TYRPA_HAEIN Tyrosine-specific transport protein 1 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=tyrP-A PE=3 SV=1 Back     alignment and function description
>sp|P0AAD3|MTR_SHIFL Tryptophan-specific transport protein OS=Shigella flexneri GN=mtr PE=3 SV=1 Back     alignment and function description
>sp|P0AAD2|MTR_ECOLI Tryptophan-specific transport protein OS=Escherichia coli (strain K12) GN=mtr PE=1 SV=1 Back     alignment and function description
>sp|Q47825|TUTB_ENTAG Tyrosine permease OS=Enterobacter agglomerans GN=tutB PE=3 SV=1 Back     alignment and function description
>sp|P23173|TNAB_ECOLI Low affinity tryptophan permease OS=Escherichia coli (strain K12) GN=tnaB PE=1 SV=1 Back     alignment and function description
>sp|Q8XB33|TNAB_ECO57 Low affinity tryptophan permease OS=Escherichia coli O157:H7 GN=tnaB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query481
255564438477 Tyrosine-specific transport protein, put 0.954 0.962 0.734 0.0
224058912418 predicted protein [Populus trichocarpa] 0.860 0.990 0.812 0.0
296083917 948 unnamed protein product [Vitis vinifera] 0.881 0.447 0.822 0.0
449493536487 PREDICTED: tyrosine-specific transport p 0.966 0.954 0.716 0.0
449452801495 PREDICTED: tyrosine-specific transport p 0.962 0.935 0.717 0.0
359479149482 PREDICTED: tyrosine-specific transport p 0.979 0.977 0.753 0.0
357493785497 Tyrosine-specific transport protein [Med 0.966 0.935 0.669 1e-179
297808013504 tryptophan/tyrosine permease family prot 0.896 0.855 0.749 1e-176
42567960505 Tryptophan/tyrosine permease [Arabidopsi 0.891 0.849 0.745 1e-176
226529039484 hypothetical protein [Zea mays] gi|21988 0.837 0.832 0.755 1e-170
>gi|255564438|ref|XP_002523215.1| Tyrosine-specific transport protein, putative [Ricinus communis] gi|223537511|gb|EEF39136.1| Tyrosine-specific transport protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/489 (73%), Positives = 407/489 (83%), Gaps = 30/489 (6%)

Query: 5   LSCMQIPTLLIPSISSSSSSREKKHHQCIQIPTHSLKHQLHSQSP--------------T 50
           +S  Q PTLLIPS          + ++ + +P H L H     S               +
Sbjct: 3   MSTFQFPTLLIPS----------RKYKFVHVPPHHLDHDQTCSSKRRSFHLRHTKYSGHS 52

Query: 51  PRVIKCFSNRQSQSTEQEFEFEFERLFSNLNQATLKRESGSLSSAIFLVAGTTVGAGILA 110
            R  +C    Q+Q+ +QE  ++ ERLFSNLNQATLKRE GSLSSAIFLVAGTTVGAGILA
Sbjct: 53  TRTFQC----QAQNQKQEV-YQVERLFSNLNQATLKREPGSLSSAIFLVAGTTVGAGILA 107

Query: 111 IPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMRTIGTV 170
           IPAVTQE+GFLASA+A I CWI+MV TGLL+AEVN+NTMCELGSGGVSLVSMA RT+GT+
Sbjct: 108 IPAVTQESGFLASAMACIFCWIYMVATGLLVAEVNINTMCELGSGGVSLVSMARRTLGTI 167

Query: 171 GVQIASWSYIFIHYTLLVAYVARSSDILTNFLGIPLWESATLFSLILGGLCYFGSQRFIG 230
           GVQIA WSYIFIHY LLVAYVARSSDI+TNFLGIPLWESATLFSL+LGG+CYFGSQRFIG
Sbjct: 168 GVQIACWSYIFIHYALLVAYVARSSDIVTNFLGIPLWESATLFSLVLGGICYFGSQRFIG 227

Query: 231 AANGALVVGIIISFTALVFVASGDLQWNALLKANFEAVPMSIPIIALSFVYQNVVPVLCT 290
           A NG LV+GII SF ALV VASGDLQ +ALLKANFEAVPMSIPIIALSFVYQNVVPVLCT
Sbjct: 228 AVNGILVIGIITSFAALVAVASGDLQLDALLKANFEAVPMSIPIIALSFVYQNVVPVLCT 287

Query: 291 NLEGNLSKVRTAIVVGTSIPLGLFLVWNAVILGSISGLEMSSGQIVDPIQQLRSSNGAVG 350
           NLEGN+SKVRTAIV+GT+IPLGLFLVWN VILGSI+  E++  +I+DP+QQLRS+NG V 
Sbjct: 288 NLEGNISKVRTAIVLGTAIPLGLFLVWNGVILGSITSNEITD-KIIDPLQQLRSTNGVVR 346

Query: 351 PIIDVFSFLAIATSYIGFILGLSDFLADLLKLPSGQSSPQPYLLTLIPPLVLSLLDPEIF 410
           PII+VFS LAIATSYIGF+LGL+DFLADLLKLP+ QS+P PYLLTL PPL L+LLDPEIF
Sbjct: 347 PIIEVFSLLAIATSYIGFVLGLADFLADLLKLPASQSNPLPYLLTLFPPLALALLDPEIF 406

Query: 411 FKALDFAGTYGVLVLFGILPAVMSWSDRYSSSSPSMTIPRIVPGGKLTLSLVIGVAGYII 470
           FKALDFAGTYGVLVLFGILPA M+WSDRYSSSSPS+ +P +VPGG++TLS VIG AGYII
Sbjct: 407 FKALDFAGTYGVLVLFGILPAAMAWSDRYSSSSPSIKLPELVPGGRITLSFVIGGAGYII 466

Query: 471 LSEILEKFG 479
            SEIL+ FG
Sbjct: 467 FSEILDNFG 475

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224058912|ref|XP_002299650.1| predicted protein [Populus trichocarpa] gi|222846908|gb|EEE84455.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|296083917|emb|CBI24305.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449493536|ref|XP_004159337.1| PREDICTED: tyrosine-specific transport protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449452801|ref|XP_004144147.1| PREDICTED: tyrosine-specific transport protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359479149|ref|XP_002267102.2| PREDICTED: tyrosine-specific transport protein-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|357493785|ref|XP_003617181.1| Tyrosine-specific transport protein [Medicago truncatula] gi|355518516|gb|AET00140.1| Tyrosine-specific transport protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|297808013|ref|XP_002871890.1| tryptophan/tyrosine permease family protein [Arabidopsis lyrata subsp. lyrata] gi|297317727|gb|EFH48149.1| tryptophan/tyrosine permease family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|42567960|ref|NP_197451.2| Tryptophan/tyrosine permease [Arabidopsis thaliana] gi|56236058|gb|AAV84485.1| At5g19500 [Arabidopsis thaliana] gi|56790240|gb|AAW30037.1| At5g19500 [Arabidopsis thaliana] gi|332005335|gb|AED92718.1| Tryptophan/tyrosine permease [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|226529039|ref|NP_001146090.1| hypothetical protein [Zea mays] gi|219885657|gb|ACL53203.1| unknown [Zea mays] gi|414888002|tpg|DAA64016.1| TPA: hypothetical protein ZEAMMB73_205095 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query481
TAIR|locus:2180801505 AT5G19500 "AT5G19500" [Arabido 0.835 0.796 0.745 4e-154
TAIR|locus:2051134436 AT2G33260 "AT2G33260" [Arabido 0.623 0.688 0.299 2.2e-38
TIGR_CMR|CBU_1539426 CBU_1539 "tryptophan/tyrosine 0.777 0.877 0.282 3.6e-34
UNIPROTKB|Q9KLH2400 VC_A0772 "Tyrosine-specific tr 0.777 0.935 0.279 1.2e-33
TIGR_CMR|VC_A0772400 VC_A0772 "tyrosine-specific tr 0.777 0.935 0.279 1.2e-33
UNIPROTKB|P0AAD4403 tyrP [Escherichia coli K-12 (t 0.690 0.823 0.290 2e-31
TIGR_CMR|SO_2065395 SO_2065 "tyrosine-specific tra 0.771 0.939 0.270 1.5e-28
TIGR_CMR|SO_1074395 SO_1074 "tyrosine-specific tra 0.765 0.931 0.239 2.5e-23
UNIPROTKB|P0AAD2414 mtr [Escherichia coli K-12 (ta 0.796 0.925 0.260 8e-23
TIGR_CMR|SO_4601418 SO_4601 "tryptophan-specific t 0.629 0.724 0.265 1.7e-20
TAIR|locus:2180801 AT5G19500 "AT5G19500" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1503 (534.1 bits), Expect = 4.0e-154, P = 4.0e-154
 Identities = 301/404 (74%), Positives = 339/404 (83%)

Query:    75 RLFSNLNQATLKRESGSLSSAIFLVAGTTVGAGILAIPAVTQEAGFLASAVAVILCWIFM 134
             RLFSNLNQ+TLKRESGSLSSAIFLVAGTTVGAGILAIPAVTQE+GFLASAVA ILCW FM
Sbjct:    93 RLFSNLNQSTLKRESGSLSSAIFLVAGTTVGAGILAIPAVTQESGFLASAVACILCWAFM 152

Query:   135 VVTGLLIAEVNVNTMCELGSGGVSLVSMAMRTIGTVGVQIASWSYIFIHYTLLVAYVARS 194
             VVTGLL+AEVNVNTM ELGSGGVSLVSMA RT+G+VGVQ+ SWSY+ IHYTLLVAY+ARS
Sbjct:   153 VVTGLLVAEVNVNTMSELGSGGVSLVSMAKRTLGSVGVQVVSWSYLLIHYTLLVAYIARS 212

Query:   195 SDILTNFLGIPLWESATLFSLILGGLCYFGSQRFIGAANGALVVGIIISFTALVFVASGD 254
             S ILTNFLGIP+WESATLFSLI GGLC+FGSQRFIGAANG LV G+I SF ALV VASGD
Sbjct:   213 SGILTNFLGIPIWESATLFSLIFGGLCFFGSQRFIGAANGVLVFGVIASFAALVAVASGD 272

Query:   255 LQWNALLKANFEAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVVGTSIPLGLF 314
             L W ALLKANFEAVPMS+PIIALSFVYQNVVPVLCT+LEG+L +VRTAIV+GT+IPLGLF
Sbjct:   273 LHWEALLKANFEAVPMSVPIIALSFVYQNVVPVLCTDLEGDLPRVRTAIVLGTAIPLGLF 332

Query:   315 LVWNAVILGSIS-GLEMSSGQIVDPIQQLRSSNGAVGPIIDVFSFLAIATSYIGFILGLS 373
             LVW+AVILGS      ++  ++VDP+QQLRSS+  VGP ++ FS  AIATSYIGF+LGLS
Sbjct:   333 LVWDAVILGSFPVDTGVAVEKMVDPLQQLRSSSVTVGPFVEAFSLFAIATSYIGFVLGLS 392

Query:   374 DFLADLLKLPSGQSSPQXXXXXXXXXXXXXXXXXEIFFKALDFAGTYGVLVLFGILPAVM 433
             DF +DLLKLPSGQ+ P                  EIFFKALDFAGTYGVLVLFGILPA M
Sbjct:   393 DFFSDLLKLPSGQNKPLLYLLTLVPPLVLSLLDPEIFFKALDFAGTYGVLVLFGILPAAM 452

Query:   434 XXXXXXXXXXXXMT-IPRIVPGGKLTLSLVIGVAGYIILSEILE 476
                         +T +P++VPGGKLTLSLV+G AGY+I+SE++E
Sbjct:   453 SWSDRYIVSSSTVTRLPQLVPGGKLTLSLVMGAAGYVIISEVIE 496
GO:0005275 "amine transmembrane transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006865 "amino acid transport" evidence=ISS
GO:0016020 "membrane" evidence=ISS
GO:0009507 "chloroplast" evidence=IDA
GO:0009706 "chloroplast inner membrane" evidence=IDA
GO:0006863 "purine nucleobase transport" evidence=RCA
TAIR|locus:2051134 AT2G33260 "AT2G33260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1539 CBU_1539 "tryptophan/tyrosine permease family protein" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KLH2 VC_A0772 "Tyrosine-specific transport protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_A0772 VC_A0772 "tyrosine-specific transport protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
UNIPROTKB|P0AAD4 tyrP [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|SO_2065 SO_2065 "tyrosine-specific transport protein" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|SO_1074 SO_1074 "tyrosine-specific transport protein, putative" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|P0AAD2 mtr [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|SO_4601 SO_4601 "tryptophan-specific transport protein" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.I.9710.1
hypothetical protein (403 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query481
pfam03222393 pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine perme 6e-67
TIGR00837381 TIGR00837, araaP, aromatic amino acid transport pr 2e-59
PRK15132403 PRK15132, PRK15132, tyrosine transporter TyrP; Pro 3e-37
COG0814415 COG0814, SdaC, Amino acid permeases [Amino acid tr 7e-31
PRK10483414 PRK10483, PRK10483, tryptophan permease; Provision 1e-27
PRK09664415 PRK09664, PRK09664, tryptophan permease TnaB; Prov 3e-20
COG0531466 COG0531, PotE, Amino acid transporters [Amino acid 2e-05
>gnl|CDD|112053 pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine permease family Back     alignment and domain information 
 Score =  219 bits (560), Expect = 6e-67
 Identities = 131/401 (32%), Positives = 204/401 (50%), Gaps = 29/401 (7%)

Query: 89  SGSLSSAIFLVAGTTVGAGILAIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNT 148
           + SL   + ++AGT +GAG+LA+P  T  AGF+ S + +IL W  M+ +GLL+ EV +  
Sbjct: 2   TPSLLGGVLIIAGTAIGAGMLALPVATAGAGFIPSLLLLILSWFLMLASGLLLLEVYLWY 61

Query: 149 MCELGSGGVSLVSMAMRTIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLGIPLWE 208
                  G S  ++A   +G  G  IA   Y F+ Y L  AY++    IL+  +      
Sbjct: 62  P-----EGASFNTLAKDLLGKKGNIIAGLVYAFLLYILTYAYISGGGSILSRVIPEMFGI 116

Query: 209 SAT------LFSLILGGLCYFGSQRFIGAANGALVVGIIISFTA----LVFVASGDLQWN 258
             +      +F+L+ G   + G+ + +   N  L+ G II+F      L+    GDL  +
Sbjct: 117 PWSARAAPLIFTLLFGPFVWAGT-KAVDRINRVLIFGKIIAFALVFSGLLPKIKGDLLLD 175

Query: 259 ALLKANFEAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVVGTSIPLGLFLVWN 318
           AL  + +  + M++P+   SF +   VP L     GN+ KVR AI++GT+IPL L+++W 
Sbjct: 176 ALDTSYWPYILMALPVFFTSFGFHGNVPSLYKYYGGNVKKVRKAILIGTAIPLVLYILWQ 235

Query: 319 AVILGSISGLEMS----SGQIVD---PIQQLRSSNGAVGPIIDVFSFLAIATSYIGFILG 371
              LG++   E +     G  +D           + +    +++FSF A+ATS++G  LG
Sbjct: 236 LATLGNLPREEFAPIIAKGGNLDTLVEALLGVLKSPSFELALELFSFFALATSFLGVALG 295

Query: 372 LSDFLADLLKLPSGQSSP-QPYLLTLIPPLVLSLLDPEIFFKALDFAGTYGVLVLFGILP 430
           L D+LADL K    ++   +  LLT +PPLV +L  PE F  AL +AG     +   ILP
Sbjct: 296 LFDYLADLFKFDDSKNGRFKTGLLTFLPPLVWALFFPEGFLYALGYAG-LAATIWAVILP 354

Query: 431 AVMSWSDRYSSSSPSMTIPRIVPGGKLTLSLVIGVAGYIIL 471
           A+++W  R    +     P  V GG  TL LVI     +IL
Sbjct: 355 ALLAWKARKRFPNA----PYRVWGGNKTLLLVILFGIVVIL 391

Length = 393
>gnl|CDD|233146 TIGR00837, araaP, aromatic amino acid transport protein Back     alignment and domain information
>gnl|CDD|185086 PRK15132, PRK15132, tyrosine transporter TyrP; Provisional Back     alignment and domain information
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|182492 PRK10483, PRK10483, tryptophan permease; Provisional Back     alignment and domain information
>gnl|CDD|182022 PRK09664, PRK09664, tryptophan permease TnaB; Provisional Back     alignment and domain information
>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 481
PRK10483414 tryptophan permease; Provisional 100.0
PRK09664415 tryptophan permease TnaB; Provisional 100.0
PRK15132403 tyrosine transporter TyrP; Provisional 100.0
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 100.0
TIGR00837381 araaP aromatic amino acid transport protein. aroma 100.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 100.0
PRK13629443 threonine/serine transporter TdcC; Provisional 100.0
KOG1303437 consensus Amino acid transporters [Amino acid tran 100.0
PTZ00206467 amino acid transporter; Provisional 100.0
TIGR00814397 stp serine transporter. The HAAAP family includes 100.0
TIGR00908442 2A0305 ethanolamine permease. The three genes used 99.97
PLN03074473 auxin influx permease; Provisional 99.97
PRK15049499 L-asparagine permease; Provisional 99.97
PRK11387471 S-methylmethionine transporter; Provisional 99.97
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 99.96
PRK10249458 phenylalanine transporter; Provisional 99.96
PRK10746461 putative transport protein YifK; Provisional 99.96
TIGR00909429 2A0306 amino acid transporter. 99.96
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 99.96
TIGR00906 557 2A0303 cationic amino acid transport permease. 99.96
PRK10655438 potE putrescine transporter; Provisional 99.96
PRK10836489 lysine transporter; Provisional 99.96
PRK10580457 proY putative proline-specific permease; Provision 99.96
PRK10238456 aromatic amino acid transporter; Provisional 99.96
PRK11357445 frlA putative fructoselysine transporter; Provisio 99.95
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 99.95
KOG1304449 consensus Amino acid transporters [Amino acid tran 99.95
PRK10197446 gamma-aminobutyrate transporter; Provisional 99.95
KOG1287479 consensus Amino acid transporters [Amino acid tran 99.95
PRK10644445 arginine:agmatin antiporter; Provisional 99.95
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 99.95
TIGR00913478 2A0310 amino acid permease (yeast). 99.95
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 99.94
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 99.94
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 99.94
TIGR00911501 2A0308 L-type amino acid transporter. 99.93
COG0833541 LysP Amino acid transporters [Amino acid transport 99.93
PRK11021410 putative transporter; Provisional 99.92
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.91
KOG1305411 consensus Amino acid transporter protein [Amino ac 99.9
TIGR00930 953 2a30 K-Cl cotransporter. 99.9
KOG4303524 consensus Vesicular inhibitory amino acid transpor 99.89
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.89
COG0531466 PotE Amino acid transporters [Amino acid transport 99.88
KOG1286554 consensus Amino acid transporters [Amino acid tran 99.87
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 99.85
TIGR00907482 2A0304 amino acid permease (GABA permease). 99.85
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 99.84
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 99.83
PRK15238496 inner membrane transporter YjeM; Provisional 99.8
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 99.78
COG3949349 Uncharacterized membrane protein [Function unknown 99.75
PF03845320 Spore_permease: Spore germination protein; InterPr 99.75
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 99.47
KOG1289550 consensus Amino acid transporters [Amino acid tran 99.29
COG1457442 CodB Purine-cytosine permease and related proteins 98.99
PRK11017404 codB cytosine permease; Provisional 98.98
TIGR00835425 agcS amino acid carrier protein. Members of the AG 98.97
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 98.92
TIGR00813407 sss transporter, SSS family. have different number 98.92
PRK11375484 allantoin permease; Provisional 98.91
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 98.9
PRK09442483 panF sodium/panthothenate symporter; Provisional 98.89
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.84
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 98.77
PRK00701439 manganese transport protein MntH; Reviewed 98.73
PRK12488549 acetate permease; Provisional 98.73
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 98.72
COG0591493 PutP Na+/proline symporter [Amino acid transport a 98.7
PF01566358 Nramp: Natural resistance-associated macrophage pr 98.66
PRK09395551 actP acetate permease; Provisional 98.64
PRK15419502 proline:sodium symporter PutP; Provisional 98.63
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 98.63
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 98.59
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 98.57
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 98.52
COG0733439 Na+-dependent transporters of the SNF family [Gene 98.38
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 98.31
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 98.3
PRK10484523 putative transporter; Provisional 98.23
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 98.21
TIGR01197390 nramp NRAMP (natural resistance-associated macroph 98.21
PRK15433439 branched-chain amino acid transport system 2 carri 98.02
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 98.02
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 97.95
COG4147529 DhlC Predicted symporter [General function predict 97.84
COG4145473 PanF Na+/panthothenate symporter [Coenzyme metabol 97.74
KOG1288 945 consensus Amino acid transporters [Amino acid tran 97.73
PHA02764399 hypothetical protein; Provisional 97.68
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 97.28
KOG3832319 consensus Predicted amino acid transporter [Genera 97.11
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 96.91
PF02028485 BCCT: BCCT family transporter; InterPro: IPR000060 96.81
PRK09928 679 choline transport protein BetT; Provisional 96.55
COG1966 575 CstA Carbon starvation protein, predicted membrane 96.28
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 96.01
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 95.28
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 95.21
PRK15015 701 carbon starvation protein A; Provisional 94.43
PRK09950506 putative transporter; Provisional 94.11
PRK03356504 L-carnitine/gamma-butyrobetaine antiporter; Provis 93.81
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 93.61
KOG2349 585 consensus Na+:iodide/myo-inositol/multivitamin sym 93.32
KOG1291503 consensus Mn2+ and Fe2+ transporters of the NRAMP 93.18
PRK15433439 branched-chain amino acid transport system 2 carri 92.88
TIGR00842453 bcct choline/carnitine/betaine transport. properti 92.8
COG1292537 BetT Choline-glycine betaine transporter [Cell env 90.62
PF00209 523 SNF: Sodium:neurotransmitter symporter family; Int 85.35
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information 
Probab=100.00  E-value=5.4e-53  Score=430.44  Aligned_cols=386  Identities=28%  Similarity=0.436  Sum_probs=347.2

Q ss_pred             hhccCCCcHHHHHHHHHHHHHhHHHhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHH
Q 044157           84 TLKRESGSLSSAIFLVAGTTVGAGILAIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMA  163 (481)
Q Consensus        84 ~~~~~~~s~~~a~~~iigt~IGaGIL~LP~~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a  163 (481)
                      +.++++++.+++++++.||+||+|||++|.+.++.|+.++.++++++|.++.|++++++|.+.++++     +.++.+++
T Consensus         5 ~~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~-----g~~~~tma   79 (414)
T PRK10483          5 TTTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRI-----GSSFDTIT   79 (414)
T ss_pred             ccccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCCHHHHH
Confidence            3467889999999999999999999999999999999999999999999999999999999998873     56899999


Q ss_pred             HHHhChhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhh-----cCchHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHH
Q 044157          164 MRTIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFL-----GIPLWESATLFSLILGGLCYFGSQRFIGAANGALVV  238 (481)
Q Consensus       164 ~~~~G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~-----~lp~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~  238 (481)
                      |+++||.++.+.++++.+.+|+.++||+.+.|+.+++.+     ++|.+.+.++|+++++.+.+.|. |.+|++|++++.
T Consensus        80 ~~~LG~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~~~i~~~~~~llF~~~~~~iv~~gt-~~vd~~n~~l~~  158 (414)
T PRK10483         80 KDLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVWLST-KAVSRMTAIVLG  158 (414)
T ss_pred             HHHcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHH
Confidence            999999999999999999999999999999999998887     46889999999999999999998 899999999999


Q ss_pred             HHHHHHHHHHHHhcCccccccccccc------ccchhhhhhHHhhhccCcchHHHhHHhhccChhhHHHHHHHHHHHHHH
Q 044157          239 GIIISFTALVFVASGDLQWNALLKAN------FEAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVVGTSIPLG  312 (481)
Q Consensus       239 ~~i~~l~iii~~~~~~~~~~~l~~~~------~~~i~~ai~vi~~af~~~~~v~~i~~~~~~~~k~~~kai~~g~~i~~v  312 (481)
                      .|++.++.++....++++.+++.+.+      +..++.++|++++||++|+++|++++++++|+||.+|++.+|+.++++
T Consensus       159 ~~i~~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~iGs~Iplv  238 (414)
T PRK10483        159 AKVITFFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYGTLMALA  238 (414)
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHHHHHHHHH
Confidence            99999988888888899887775432      234789999999999999999999999988899999999999999999


Q ss_pred             HHHHHHHHHHhccccccc-----cCCCcchhHHHhhh--cCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCCC-
Q 044157          313 LFLVWNAVILGSISGLEM-----SSGQIVDPIQQLRS--SNGAVGPIIDVFSFLAIATSYIGFILGLSDFLADLLKLPS-  384 (481)
Q Consensus       313 ~Yll~~~~v~G~~~~~~~-----~~~~~~~~l~~l~~--~~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~l~~~~~~~~-  384 (481)
                      +|++|..+++|.+|.++.     .++|++.+++.+.+  .++++..+..+|+.+|+.|||.|+.+++.|.++|.+|+++ 
T Consensus       239 ~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~~~  318 (414)
T PRK10483        239 LYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDS  318 (414)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            999999999999997651     34566555566654  3567778899999999999999999999999999999865 


Q ss_pred             CCCCcchhhHhhHHHHHHHHhCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccCchHHHHHHHH
Q 044157          385 GQSSPQPYLLTLIPPLVLSLLDPEIFFKALDFAGTYGVLVLFGILPAVMSWSDRYSSSSPSMTIPRIVPGGKLTLSLVIG  464 (481)
Q Consensus       385 ~~~r~~~~~l~~~~~llia~~~P~~f~~~l~~~G~~~~~~l~~ilP~l~~~~~r~~~~~~~~~~~~~vpg~~~~~~~~i~  464 (481)
                      .++|...++++++||++++.++|+.|..+++++|... .++..++|.+|+|+.|||.+    +.+|++||++....++++
T Consensus       319 ~~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~~-~il~~ilP~lM~~~~Rk~~~----~~~y~v~Gg~~~l~~~~~  393 (414)
T PRK10483        319 AMGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLAA-TIWAAIVPALLARASRKRFG----SPKFRVWGGKPMIVLILL  393 (414)
T ss_pred             cccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCC----CCCceecCCHHHHHHHHH
Confidence            3567788899999999999999999999999999885 48899999999999997753    346999999999999999


Q ss_pred             HHHHHHHHHHHHHcCC
Q 044157          465 VAGYIILSEILEKFGL  480 (481)
Q Consensus       465 ~~~~~~~~~~~~~~~~  480 (481)
                      +++.+++.+++.++|+
T Consensus       394 ~g~~~i~~~i~~~~~~  409 (414)
T PRK10483        394 FGVGNALVHILSSFNL  409 (414)
T ss_pred             HHHHHHHHHHHHHhCc
Confidence            9999999999999884

>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PHA02764 hypothetical protein; Provisional Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom Back     alignment and domain information
>PRK09928 choline transport protein BetT; Provisional Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>PRK09950 putative transporter; Provisional Back     alignment and domain information
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>TIGR00842 bcct choline/carnitine/betaine transport Back     alignment and domain information
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query481
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-05
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 1e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 44.1 bits (103), Expect = 9e-05
 Identities = 39/296 (13%), Positives = 77/296 (26%), Gaps = 84/296 (28%)

Query: 178 SYIFIH------YTLLVAYVARSSDILTNF-LGIPLW------ESATLFSLILGGLCYFG 224
             + I        T +   V  S  +       I  W       S      +L  L Y  
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI-FWLNLKNCNSPETVLEMLQKLLYQI 209

Query: 225 SQRFIGAANGALVVGIIISFTAL-----VFVASGDLQWNALL-------KANFEAVPMSI 272
              +   ++ +    I +   ++       + S   + N LL          + A  +S 
Sbjct: 210 DPNWTSRSDHS--SNIKLRIHSIQAELRRLLKSKPYE-NCLLVLLNVQNAKAWNAFNLSC 266

Query: 273 PIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVVGTSIPLGLFLVWNAVILGSISGLEMSS 332
            I+  +  ++ V   L      ++S    ++ +       L L +          L+   
Sbjct: 267 KILLTT-RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY----------LDCR- 314

Query: 333 GQIVDPIQQLRSSNGAVGPIIDVFSFLAIATSYIGFILG--LSDFLADLLKLPSGQSSPQ 390
                  Q L        P         ++      I+   + D LA          +  
Sbjct: 315 ------PQDLPREVLTTNP-------RRLS------IIAESIRDGLA----------TWD 345

Query: 391 PYLLTLIPPLVLSLLDPEIFFKALDFAGTYGVLVLFGILP-------AVMS--WSD 437
            +       L   +   E     L+ A    +     + P        ++S  W D
Sbjct: 346 NWKHVNCDKLTTII---ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query481
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.97
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 99.95
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 99.92
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 99.16
3dh4_A 530 Sodium/glucose cotransporter; membrane protein, sy 98.73
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 98.45
2a65_A 519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 97.49
2wsw_A509 BCCT family betaine/carnitine/choline transporter; 94.35
4ain_A539 Glycine betaine transporter BETP; membrane protein 92.8
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.97  E-value=2.9e-27  Score=246.41  Aligned_cols=366  Identities=13%  Similarity=0.104  Sum_probs=266.8

Q ss_pred             ccCCCcHHHHHHHHHHHHHhHHHhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHHH
Q 044157           86 KRESGSLSSAIFLVAGTTVGAGILAIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMR  165 (481)
Q Consensus        86 ~~~~~s~~~a~~~iigt~IGaGIL~LP~~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~  165 (481)
                      ++|+.+.++++++.+|++||+|++.+|..+++.|. .+++..+++++++...++.++|++.++|+     .++.++++++
T Consensus         6 ~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~-~~~~~~li~~~~~~~~a~~~~el~~~~p~-----~Gg~y~~~~~   79 (445)
T 3l1l_A            6 DAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSFLDPS-----PGGSYAYARR   79 (445)
T ss_dssp             -CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----TTTHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHccCCC-----CCCchhhHHh
Confidence            56789999999999999999999999998888886 47888899999999999999999999984     4579999999


Q ss_pred             HhChhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhc-----CchHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHH
Q 044157          166 TIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLG-----IPLWESATLFSLILGGLCYFGSQRFIGAANGALVVGI  240 (481)
Q Consensus       166 ~~G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~-----lp~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~~~  240 (481)
                      .+||+.+++.+|.+++.......++....+++++.+++     .+.+...+.+.+++..+++.|. |..++++.+.+..+
T Consensus        80 ~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~-~~~~~~~~~~~~~~  158 (445)
T 3l1l_A           80 CFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNIVGP-KMITRVQAVATVLA  158 (445)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHH
T ss_pred             HcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhch-HHHHHHHHHHHHHH
Confidence            99999999999999887776667777788888887764     2234445555566677888998 89999999999998


Q ss_pred             HHHHHHHHHHhcCcccccccc----cc---cccchhhhhhHHhhhccCcchHHHhHHhhccChhhHHHHHHHHHHHHHHH
Q 044157          241 IISFTALVFVASGDLQWNALL----KA---NFEAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVVGTSIPLGL  313 (481)
Q Consensus       241 i~~l~iii~~~~~~~~~~~l~----~~---~~~~i~~ai~vi~~af~~~~~v~~i~~~~~~~~k~~~kai~~g~~i~~v~  313 (481)
                      ++.++++++.+..+.+.+++.    +.   ++.++..++...+++|.+.+....+.+|+|+|+|++||++..+..+..++
T Consensus       159 i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~~~~~  238 (445)
T 3l1l_A          159 LIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVC  238 (445)
T ss_dssp             HHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHHHHHH
Confidence            888777776665554443332    11   24567788888999999999999999999766799999999999999999


Q ss_pred             HHHHHHHHHhcccccccc--CCCcchhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh---------cCC
Q 044157          314 FLVWNAVILGSISGLEMS--SGQIVDPIQQLRSSNGAVGPIIDVFSFLAIATSYIGFILGLSDFLADL---------LKL  382 (481)
Q Consensus       314 Yll~~~~v~G~~~~~~~~--~~~~~~~l~~l~~~~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~l~~~---------~~~  382 (481)
                      |++...+..+..|.++..  +++..+..+...  +++...++.+...++..++.++..++..|.+...         +.+
T Consensus       239 y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~  316 (445)
T 3l1l_A          239 YVLSTTAIMGMIPNAALRVSASPFGDAARMAL--GDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFAR  316 (445)
T ss_dssp             HHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHH--CTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCGGGGC
T ss_pred             HHHHHHHHHhcCCHHHHhccCcHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHh
Confidence            999998899988876532  233344444443  4677778888888888888888887777654322         222


Q ss_pred             CCCCCCcchhhHh--hHHHHHHHHh--Cc---hHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccCc
Q 044157          383 PSGQSSPQPYLLT--LIPPLVLSLL--DP---EIFFKALDFAGTYGVLVLFGILPAVMSWSDRYSSSSPSMTIPRIVPGG  455 (481)
Q Consensus       383 ~~~~~r~~~~~l~--~~~~llia~~--~P---~~f~~~l~~~G~~~~~~l~~ilP~l~~~~~r~~~~~~~~~~~~~vpg~  455 (481)
                      .++ ++.+.+.+.  .++..++...  .|   +.|..+.++.+...  .+.+.++++.+++.|+|+| .     .|.|.+
T Consensus       317 ~~~-~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~y~~~~~~~~~~r~~~~-~-----~r~~~~  387 (445)
T 3l1l_A          317 VNK-AGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFT--LVPYLYTCAALLLLGHGHF-G-----KARPAY  387 (445)
T ss_dssp             CCT-TCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHSSSS-G-----GGCTTT
T ss_pred             cCC-CCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhcCc-c-----cccchh
Confidence            232 233333222  2223333322  33   22555555554333  4677888888899988765 2     255777


Q ss_pred             hHHHHHHHHHHHHH
Q 044157          456 KLTLSLVIGVAGYI  469 (481)
Q Consensus       456 ~~~~~~~i~~~~~~  469 (481)
                      ++.+.+..+...++
T Consensus       388 ~~~~~~~~~~~~~~  401 (445)
T 3l1l_A          388 LAVTTIAFLYCIWA  401 (445)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            76666665554444
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A* Back     alignment and structure
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query481
d2a65a1 509 Na(+):neurotransmitter symporter homologue LeuT {A 95.99
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.99  E-value=0.86  Score=44.92  Aligned_cols=78  Identities=19%  Similarity=0.221  Sum_probs=44.9

Q ss_pred             CcHHHHHHHHHHHHHhHH-HhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHHHHhC
Q 044157           90 GSLSSAIFLVAGTTVGAG-ILAIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMRTIG  168 (481)
Q Consensus        90 ~s~~~a~~~iigt~IGaG-IL~LP~~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~~~G  168 (481)
                      .+-.+-++-.+|.++|.| +--.|+...+-|-..-++..+++.++. ---.+++|++.---...| ..+.+..+.....+
T Consensus         5 ~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~-gvPll~lE~~lGq~~~~g-~i~~~~~i~~~~~~   82 (509)
T d2a65a1           5 ATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLV-GIPLMWIEWAMGRYGGAQ-GHGTTPAIFYLLWR   82 (509)
T ss_dssp             SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTT-TCCSHHHHHHHHSC
T ss_pred             CChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHH-HHHHHHHHHHHcCCCCCC-cccHHHHHHHHhcc
Confidence            456788889999999999 558999876655333333343333322 233345677652211111 24467777666554


Q ss_pred             h
Q 044157          169 T  169 (481)
Q Consensus       169 ~  169 (481)
                      .
T Consensus        83 ~   83 (509)
T d2a65a1          83 N   83 (509)
T ss_dssp             S
T ss_pred             C
Confidence            3