Citrus Sinensis ID: 044175
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 537 | 2.2.26 [Sep-21-2011] | |||||||
| Q93VV5 | 591 | Probable peptide/nitrate | yes | no | 0.979 | 0.890 | 0.427 | 1e-120 | |
| Q8VYE4 | 567 | Probable peptide/nitrate | no | no | 0.979 | 0.927 | 0.407 | 1e-113 | |
| Q8H157 | 585 | Nitrate transporter 1.2 O | no | no | 0.986 | 0.905 | 0.395 | 1e-112 | |
| Q56XQ6 | 601 | Probable peptide/nitrate | no | no | 0.970 | 0.866 | 0.417 | 1e-108 | |
| Q9FM20 | 589 | Probable peptide/nitrate | no | no | 0.957 | 0.872 | 0.367 | 1e-98 | |
| Q9LYR6 | 624 | Probable peptide/nitrate | no | no | 0.981 | 0.844 | 0.361 | 1e-95 | |
| Q9LFB8 | 570 | Peptide transporter PTR5 | no | no | 0.990 | 0.933 | 0.338 | 1e-95 | |
| Q9M390 | 570 | Peptide transporter PTR1 | no | no | 0.979 | 0.922 | 0.334 | 1e-92 | |
| Q9LSE8 | 521 | Putative peptide/nitrate | no | no | 0.942 | 0.971 | 0.352 | 4e-91 | |
| P46032 | 585 | Peptide transporter PTR2 | no | no | 0.979 | 0.899 | 0.324 | 4e-91 |
| >sp|Q93VV5|PTR16_ARATH Probable peptide/nitrate transporter At1g59740 OS=Arabidopsis thaliana GN=At1g59740 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 431 bits (1108), Expect = e-120, Method: Compositional matrix adjust.
Identities = 229/536 (42%), Positives = 340/536 (63%), Gaps = 10/536 (1%)
Query: 9 KQKGGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLC 68
+ GG RA F+ L + E MG A +++ Y NEMHF L+ A+N +TN +G+ F+
Sbjct: 40 NKHGGMRAALFVLGLQAFEIMGIAAVGNNLITYVINEMHFPLSKAANIVTNFVGTIFIFA 99
Query: 69 LVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCG---KSSC--VKGGI 123
L+GG++SD FL F T +IFG +E+ ++++VQA+ +L PP C +C KG
Sbjct: 100 LLGGYLSDAFLGSFWTIIIFGFVELSGFILLSVQAHLPQLKPPKCNPLIDQTCEEAKGFK 159
Query: 124 AAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGV 183
A F+ +L L ALGSG V+ + A GA QF + PK +K L+SYFN ++ +I +
Sbjct: 160 AMIFFMALYLVALGSGCVKPNMIAHGADQFSQSHPKQSKRLSSYFNAAYFAFSMGELIAL 219
Query: 184 TAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQVVVVAIKN 243
T +V+V T GF +S+ +G I+LV G ++RN++P S ++ V+V AI
Sbjct: 220 TLLVWVQTHSGMDIGFGVSAAAMTMGIISLVSGTMYFRNKRPRRSIFTPIAHVIVAAILK 279
Query: 244 RKLSLPENPEELY-EINEKERVGTEERIPHTNQFRCLDKAAIVPKDS-TEAAPWRVCTLT 301
RKL+ P +P L+ + + V +PHT +FR LDKA I +D+ T+ +PWR+CT+T
Sbjct: 280 RKLASPSDPRMLHGDHHVANDVVPSSTLPHTPRFRFLDKACIKIQDTNTKESPWRLCTVT 339
Query: 302 QVEEVKILTRMMPILASTILMNTCLAQLQTFSVTQGAYMDPQL-GSIKVPTPSIPVIPLL 360
QVE+VK L ++PI ASTI+ NT LAQLQTFSV QG+ M+ +L S +P S+ IP +
Sbjct: 340 QVEQVKTLISLVPIFASTIVFNTILAQLQTFSVQQGSSMNTRLSNSFHIPPASLQAIPYI 399
Query: 361 FMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVEVQRRNAFNQ 420
+ L+P+Y+ VPFARK+TGH SGI L R+G+GL LS SM A +E +RR++ +
Sbjct: 400 MLIFLVPLYDSFLVPFARKLTGHNSGIPPLTRIGIGLFLSTFSMVSAAMLEKKRRDS-SV 458
Query: 421 MPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLSFGNFLS 480
+ + +S+FW++ Q+ IFGI++MFT VGL+EFFYK++ GM + + T+ S SFG + S
Sbjct: 459 LDGRILSIFWITPQFLIFGISEMFTAVGLIEFFYKQSAKGMESFLMALTYCSYSFGFYFS 518
Query: 481 SVFVDIINAVTKRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYLYAAAW 536
SV V ++N +T SK GWL D+NK+ +LFYW LA+LS+LNF+ YL+ + W
Sbjct: 519 SVLVSVVNKITSTSVDSK-GWLGENDLNKDRLDLFYWLLAVLSLLNFLSYLFWSRW 573
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8VYE4|PTR12_ARATH Probable peptide/nitrate transporter At1g27040 OS=Arabidopsis thaliana GN=At1g27040 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 407 bits (1047), Expect = e-113, Method: Compositional matrix adjust.
Identities = 224/550 (40%), Positives = 336/550 (61%), Gaps = 24/550 (4%)
Query: 2 EDKVATIKQKGGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLM 61
+K A + GG A F+ + LEN+ F+ANA ++VLY KN MH +LA +S+ +T M
Sbjct: 19 RNKAALRGRHGGMLAASFVLAVEILENLAFLANASNLVLYLKNFMHMSLARSSSEVTTFM 78
Query: 62 GSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVK- 120
+ FLL L+GGF++D F S F LI ++E L L+++T+QA L PP C S+ ++
Sbjct: 79 ATAFLLALLGGFLADAFFSTFVIFLISASIEFLGLILLTIQARRPSLMPPPCKSSAALRC 138
Query: 121 ----GGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTT 176
G AA+ + L L +LG GG++G+LP+ GA QFDE PKG K +++FNY++ +
Sbjct: 139 EVVGGSKAAFLFVGLYLVSLGIGGIKGSLPSHGAEQFDEGTPKGRKQRSTFFNYYVFCLS 198
Query: 177 LAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQV 236
A++ VT +V++ K W GF +S+I F+ + ++G FY+N+ P SPL + +V
Sbjct: 199 CGALVAVTFVVWIEDNKGWEWGFGVSTISIFLSILVFLLGSRFYKNKIPRGSPLTTIFKV 258
Query: 237 VVVAIKNRKLSLPENPEELYEINEKERVGTEERIPH---TNQFRCLDKAAIVPKDSTEAA 293
++ A +S + + + + EE+ P TN CL+KA +
Sbjct: 259 LLAA---SIVSCSSKTSSNHFTSREVQSEHEEKTPSQSLTNSLTCLNKAI----EGKTHH 311
Query: 294 PWRVCTLTQVEEVKILTRMMPILASTILMNTCLAQLQTFSVTQGAYMDPQLGSIKVPTPS 353
W CT+ QVE+VKI+ +M+PI TI++N CLAQL T+SV Q A M+ ++ + VP+ S
Sbjct: 312 IWLECTVQQVEDVKIVLKMLPIFGCTIMLNCCLAQLSTYSVHQAATMNRKIVNFNVPSAS 371
Query: 354 IPVIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVEVQ 413
+PV P++FM IL P Y+ L +PFARK+T GIT LQR+GVGLVLS V+M +A VE++
Sbjct: 372 LPVFPVVFMLILAPTYDHLIIPFARKVTKSEIGITHLQRIGVGLVLSIVAMAVAALVELK 431
Query: 414 RRNA------FNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTS 467
R+ + I+ W++ QY G AD+FTL GLLEFF+ EAP+ MR+L+TS
Sbjct: 432 RKQVAREAGLLDSEETLPITFLWIALQYLFLGSADLFTLAGLLEFFFTEAPSSMRSLATS 491
Query: 468 FTFLSLSFGNFLSSVFVDIINAVTKRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNF 527
++ SL+ G +LSSV V I+N VTK + + WL G +N+N +LFYW + +LSV+NF
Sbjct: 492 LSWASLALGYYLSSVMVPIVNRVTK--SAGQSPWL-GEKLNRNRLDLFYWLMCVLSVVNF 548
Query: 528 VLYLYAAAWY 537
+ YL+ A Y
Sbjct: 549 LHYLFWAKRY 558
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8H157|PTR19_ARATH Nitrate transporter 1.2 OS=Arabidopsis thaliana GN=NRT1.2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 404 bits (1038), Expect = e-112, Method: Compositional matrix adjust.
Identities = 224/566 (39%), Positives = 338/566 (59%), Gaps = 36/566 (6%)
Query: 2 EDKVATIKQKGGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLM 61
++ A + GG A F+ V+ LEN+ ++ANA ++VLY + MH + + ++N +TN M
Sbjct: 17 RNRAAVKGRHGGMLAASFVLVVEILENLAYLANASNLVLYLREYMHMSPSKSANDVTNFM 76
Query: 62 GSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSC--V 119
G+ FLL L+GGF+SD F S F LI ++E L L+++T+QA + L PP C +C V
Sbjct: 77 GTAFLLALLGGFLSDAFFSTFQIFLISASIEFLGLIILTIQARTPSLMPPSCDSPTCEEV 136
Query: 120 KGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAA 179
G AA + L L ALG GG++G+L + GA QFDE PKG K +++FNYF+ A
Sbjct: 137 SGSKAAMLFVGLYLVALGVGGIKGSLASHGAEQFDESTPKGRKQRSTFFNYFVFCLACGA 196
Query: 180 VIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQVVVV 239
++ VT +V++ K W GF +S+I F+ + + G FYRN+ P SPL + +V++
Sbjct: 197 LVAVTFVVWLEDNKGWEWGFGVSTIAIFVSILIFLSGSRFYRNKIPCGSPLTTILKVLLA 256
Query: 240 AI---------KNRKLSLPENP---------EELYEINEKERVGTEERIPH----TNQFR 277
A N S+ +P +E+ E E+ EE +P TN +
Sbjct: 257 ASVKCCSSGSSSNAVASMSVSPSNHCVSKGKKEVESQGELEKPRQEEALPPRAQLTNSLK 316
Query: 278 CLDKAAIVPKDSTEAAPWRVCTLTQVEEVKILTRMMPILASTILMNTCLAQLQTFSVTQG 337
L+ AA D CT+ QVE+VKI+ +M+PI A TI++N CLAQL TFSV Q
Sbjct: 317 VLNGAA----DEKPVHRLLECTVQQVEDVKIVLKMLPIFACTIMLNCCLAQLSTFSVQQA 372
Query: 338 AYMDPQLGSIKVPTPSIPVIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGL 397
A M+ ++GS+K+P S+P+ P++F+ IL P+Y+ L +PFARK T +G+T LQR+GVGL
Sbjct: 373 ASMNTKIGSLKIPPASLPIFPVVFIMILAPIYDHLIIPFARKATKTETGVTHLQRIGVGL 432
Query: 398 VLSAVSMTIAGFVEVQRRNAFNQ---MPPKQ---ISLFWLSFQYCIFGIADMFTLVGLLE 451
VLS ++M +A VE++R+ + K+ ++ W++ QY G AD+FTL GLLE
Sbjct: 433 VLSILAMAVAALVEIKRKGVAKDSGLLDSKETLPVTFLWIALQYLFLGSADLFTLAGLLE 492
Query: 452 FFYKEAPAGMRTLSTSFTFLSLSFGNFLSSVFVDIINAVTKRITPSKQGWLHGTDINKNN 511
+F+ EAP+ MR+L+TS ++ SL+ G +LSSV V I+N++T + WL G IN+
Sbjct: 493 YFFTEAPSSMRSLATSLSWASLAMGYYLSSVIVSIVNSITG--SSGNTPWLRGKSINRYK 550
Query: 512 ANLFYWFLAILSVLNFVLYLYAAAWY 537
+ FYW + +LS NF+ YL+ A Y
Sbjct: 551 LDYFYWLMCVLSAANFLHYLFWAMRY 576
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Low-affinity proton-dependent nitrate transporter. Involved in constitutive nitrate uptake. Not involved in histidine or dipeptides transport. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q56XQ6|PTR15_ARATH Probable peptide/nitrate transporter At1g33440 OS=Arabidopsis thaliana GN=At1g33440 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 393 bits (1010), Expect = e-108, Method: Compositional matrix adjust.
Identities = 224/537 (41%), Positives = 333/537 (62%), Gaps = 16/537 (2%)
Query: 10 QKGGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCL 69
+ GG RA F+ + E M A +++ Y NEMHF L+ ++N +TN +G+ FLL L
Sbjct: 38 KHGGTRAALFVLGFQAFEMMAIAAVGNNLITYVFNEMHFPLSKSANLVTNFIGTVFLLSL 97
Query: 70 VGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSS----CVK--GGI 123
+GGF+SD++L F T L+FG +E+ ++++VQA+ +L PP+C S CV+ G
Sbjct: 98 LGGFLSDSYLGSFRTMLVFGVIEISGFILLSVQAHLPELRPPECNMKSTTIHCVEANGYK 157
Query: 124 AAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGV 183
AA Y +LCL ALGSG ++ + + GA QF KD + L+S+FN ++ +I +
Sbjct: 158 AATLYTALCLVALGSGCLKPNIISHGANQFQRKD---LRKLSSFFNAAYFAFSMGQLIAL 214
Query: 184 TAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQVVVVAIKN 243
T +V+V T GF +S+ V G I+LV G FYRN+ P S ++QV V AI
Sbjct: 215 TLLVWVQTHSGMDVGFGVSAAVMAAGMISLVAGTSFYRNKPPSGSIFTPIAQVFVAAITK 274
Query: 244 RKLSLPENPEELYEIN-EKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQ 302
RK P NP +++ + + RV + + H+N+FR LDKA I + +PWR+CT+ Q
Sbjct: 275 RKQICPSNPNMVHQPSTDLVRV---KPLLHSNKFRFLDKACIKTQGKAMESPWRLCTIEQ 331
Query: 303 VEEVKILTRMMPILASTILMNTCLAQLQTFSVTQGAYMDPQL-GSIKVPTPSIPVIPLLF 361
V +VKIL ++PI A TI+ NT LAQLQTFSV QG+ M+ + + ++P S+ IP +
Sbjct: 332 VHQVKILLSVIPIFACTIIFNTILAQLQTFSVQQGSSMNTHITKTFQIPPASLQAIPYII 391
Query: 362 MSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVEVQRRNAFNQM 421
+ +P+YE FVP ARK+TG+ SGI+ LQR+G GL L+ SM A VE +RR +F +
Sbjct: 392 LIFFVPLYETFFVPLARKLTGNDSGISPLQRIGTGLFLATFSMVAAALVEKKRRESFLEQ 451
Query: 422 PPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLSFGNFLSS 481
+S+FW++ Q+ IFG+++MFT VGL+EFFYK++ M++ T+ T+ S SFG +LSS
Sbjct: 452 -NVMLSIFWIAPQFLIFGLSEMFTAVGLVEFFYKQSSQSMQSFLTAMTYCSYSFGFYLSS 510
Query: 482 VFVDIINAVTKRI-TPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYLYAAAWY 537
V V +N VT + +K+GWL D+NK+ + FYW LA LS +NF YL+ + WY
Sbjct: 511 VLVSTVNRVTSSNGSGTKEGWLGDNDLNKDRLDHFYWLLASLSFINFFNYLFWSRWY 567
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FM20|PTR54_ARATH Probable peptide/nitrate transporter At5g62730 OS=Arabidopsis thaliana GN=At5g62730 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 360 bits (924), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 199/541 (36%), Positives = 306/541 (56%), Gaps = 27/541 (4%)
Query: 10 QKGGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCL 69
+ GG A F+ V+ LEN+ F+ANA ++VLY +M F+ +GA+N +T MG+ F L L
Sbjct: 56 RHGGMLAASFVLVVEVLENLAFLANASNLVLYLSTKMGFSPSGAANAVTAFMGTAFFLAL 115
Query: 70 VGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYA 129
+GGF++D F + F L+ +E L L+++TVQA+ P + +
Sbjct: 116 LGGFLADAFFTTFHIYLVSAAIEFLGLMVLTVQAHEHSTEPWS-----------RVFLFV 164
Query: 130 SLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYV 189
L L ALG GG++G+LP GA QFDE+ G + + +FNYF+ + + A+I VT +V++
Sbjct: 165 GLYLVALGVGGIKGSLPPHGAEQFDEETSSGRRQRSFFFNYFIFSLSCGALIAVTVVVWL 224
Query: 190 STEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQVVVVAI--KNRKLS 247
K W GF +S+ I + G YR + P SP+ + +V+ A+ K +K
Sbjct: 225 EDNKGWSYGFGVSTAAILISVPVFLAGSRVYRLKVPSGSPITTLFKVLTAALYAKYKKRR 284
Query: 248 LPENPEELYEINEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVK 307
+ N+ + T++ + F +V + + P R CT QV++VK
Sbjct: 285 TSRIVVTCHTRNDCDDSVTKQNCDGDDGFLGSFLGEVVRERESLPRPLR-CTEEQVKDVK 343
Query: 308 ILTRMMPILASTILMNTCLAQLQTFSVTQGAYMDPQLGSIKVPTPSIPVIPLLFMSILLP 367
I+ +++PI STI++N CLAQL TFSV Q + M+ +LGS VP ++PV P++FM IL P
Sbjct: 344 IVIKILPIFMSTIMLNCCLAQLSTFSVQQASTMNTKLGSFTVPPAALPVFPVVFMMILAP 403
Query: 368 VYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVEVQRRN----------- 416
Y L +P ARK T +GIT LQR+G GLVLS V+M +A VE +R++
Sbjct: 404 TYNHLLLPLARKSTKTETGITHLQRIGTGLVLSIVAMAVAALVETKRKHVVVSCCSNNNS 463
Query: 417 AFNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLSFG 476
+ P I+ W++ QY G AD+FTL G++EFF+ EAP+ MR+L+TS ++ SL+ G
Sbjct: 464 SSYSSSPLPITFLWVAIQYVFLGSADLFTLAGMMEFFFTEAPSTMRSLATSLSWASLAMG 523
Query: 477 NFLSSVFVDIINAVTKRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYLYAAAW 536
+ SSV V +N VT WL G ++N+ + FYW + +LS +NF+ YL+ A+
Sbjct: 524 YYFSSVLVSAVNFVTG--LNHHNPWLLGENLNQYHLERFYWLMCVLSGINFLHYLFWASR 581
Query: 537 Y 537
Y
Sbjct: 582 Y 582
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYR6|PTR49_ARATH Probable peptide/nitrate transporter At5g13400 OS=Arabidopsis thaliana GN=At5g13400 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 351 bits (900), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 201/556 (36%), Positives = 311/556 (55%), Gaps = 29/556 (5%)
Query: 5 VATIKQKGGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGST 64
+A + + GG+ A FIF E M + +++MV + MH +SN + N +G +
Sbjct: 59 IANLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGIS 118
Query: 65 FLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPD---CGKSSCVKG 121
++GGF++D +L R+ T IF T+ ++ L+ IT+ A S K+ PD CG+ S + G
Sbjct: 119 QASSVLGGFLADAYLGRYWTIAIFTTMYLVGLIGITLGA-SLKMFVPDQSNCGQLSLLLG 177
Query: 122 GIAA-------YFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLT 174
Y Y L + G+ G+R + + GA QFDEK L +FN+F L+
Sbjct: 178 NCEEAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLS 237
Query: 175 TTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVS 234
TL A+I T +VYV E W F ++ I G P YR++ PG SPL RV+
Sbjct: 238 VTLGAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVA 297
Query: 235 QVVVVAIKNRKLSLPENP-EELYEI-NEKERVGTEERIPHTNQFRCLDKAAI-VPKDSTE 291
QV+V A + R + + LYE+ K + +IPH+N F LDKAA+ + +D E
Sbjct: 298 QVLVAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHSNDFIWLDKAALELKEDGLE 357
Query: 292 AAPWRVCTLTQVEEVKILTRMMPILASTILMNTCLAQLQTFSVTQGAYMDPQLGSIKVPT 351
+PW++CT+TQVEEVKIL R++PI TI+++ L + T SV Q ++ + +K+P
Sbjct: 358 PSPWKLCTVTQVEEVKILIRLIPIPTCTIMLSLVLTEYLTLSVQQAYTLNTHIQHLKLPV 417
Query: 352 PSIPVIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVE 411
+PV P L + ++L +Y +FVP R+ITG+P G +QLQRVG+GL +S +S+ AG E
Sbjct: 418 TCMPVFPGLSIFLILSLYYSVFVPITRRITGNPHGASQLQRVGIGLAVSIISVAWAGLFE 477
Query: 412 VQRR----------NAFNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGM 461
RR N QMP ++ +WL QYC+ GIA++F +VGLLEF Y+EAP M
Sbjct: 478 NYRRHYAIQNGFEFNFLTQMP--DLTAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAM 535
Query: 462 RTLSTSFTFLSLSFGNFLSSVFVDIINAVTKRITPSKQGWLHGTDINKNNANLFYWFLAI 521
+++ +++ L+ G F +++ +I+ A T+ + WL +IN + YW L +
Sbjct: 536 KSIGSAYAALAGGLGCFAATILNNIVKAATR--DSDGKSWL-SQNINTGRFDCLYWLLTL 592
Query: 522 LSVLNFVLYLYAAAWY 537
LS LNF ++L++A Y
Sbjct: 593 LSFLNFCVFLWSAHRY 608
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 350 bits (899), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 186/550 (33%), Positives = 314/550 (57%), Gaps = 18/550 (3%)
Query: 1 MEDKVATIKQKGGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNL 60
+ K A + G ++AC FI E + + + +++ Y + +M+ AS +++N
Sbjct: 16 IHKKPANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSVSNW 75
Query: 61 MGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVK 120
G+ + L+G FI+D +L R+ T F + + + ++T+ A L P G++
Sbjct: 76 SGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTPTCSGETCHAT 135
Query: 121 GGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAV 180
G A + +L L ALG+GG++ + + GA QFD+ D K ++ +S+FN+F + A+
Sbjct: 136 AGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFFNWFYFVINVGAM 195
Query: 181 IGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQVVVVA 240
I + +V++ W G + ++ I + G FYR Q+PG SPL R+ QV+V +
Sbjct: 196 IASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGSPLTRMLQVIVAS 255
Query: 241 IKNRKLSLPENPEELYEINEKER--VGTEERIPHTNQFRCLDKAAIVP----KDSTEAAP 294
+ K+ +PE+ LYE + E +G+ ++ HT DKAA+ K + +++
Sbjct: 256 CRKSKVKIPEDESLLYENQDAESSIIGS-RKLEHTKILTFFDKAAVETESDNKGAAKSSS 314
Query: 295 WRVCTLTQVEEVKILTRMMPILASTILMNTCLAQLQTFSVTQGAYMDPQLG-SIKVPTPS 353
W++CT+TQVEE+K L R++PI A+ I+ + +Q+ T V QG +D +G + K+P+ S
Sbjct: 315 WKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQHMGPNFKIPSAS 374
Query: 354 IPVIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVEVQ 413
+ + L + PVY+ L VPFARK TGH G TQLQR+G+GLV+S SM AG +EV
Sbjct: 375 LSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISIFSMVSAGILEVA 434
Query: 414 R------RNAFNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTS 467
R N +N+ +++FW QY + G A++FT +G LEFFY +AP MR+L ++
Sbjct: 435 RLNYVQTHNLYNE-ETIPMTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQAPDAMRSLCSA 493
Query: 468 FTFLSLSFGNFLSSVFVDIINAVTKRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNF 527
+ +++FGN+LS+ V ++ VT+ + + GW+ ++N + + F+W LA LS LNF
Sbjct: 494 LSLTAIAFGNYLSTFLVTLVTKVTR--SGGRPGWI-AKNLNNGHLDYFFWLLAGLSFLNF 550
Query: 528 VLYLYAAAWY 537
++YL+ A WY
Sbjct: 551 LVYLWIAKWY 560
|
Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 340 bits (873), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 183/547 (33%), Positives = 310/547 (56%), Gaps = 21/547 (3%)
Query: 6 ATIKQKGGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTF 65
A ++ G ++AC FI E + + ++V Y ++ ++ A A+N +TN G+ +
Sbjct: 20 ANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCY 79
Query: 66 LLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCV-KGGIA 124
+ L+G FI+D +L R+ T F + V + ++T+ A L P +C +C
Sbjct: 80 ITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCNADTCHPNSSQT 139
Query: 125 AYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVT 184
A F+ +L + ALG+GG++ + + GA QFDE D +S+FN+F + + A+I T
Sbjct: 140 AVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYFSINVGALIAAT 199
Query: 185 AIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQVVVVAIKNR 244
+V++ W GF + ++ I G FYR Q+PG SPL R+ QV+V A +
Sbjct: 200 VLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAFRKI 259
Query: 245 KLSLPENPEELYEINEKE-RVGTEERIPHTNQFRCLDKAAIVPKDST----EAAPWRVCT 299
+ +PE+ L+E + E + ++ HT+ + DKAA+ + + E PWR+C+
Sbjct: 260 SVKVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFDKAAVESQSDSIKDGEVNPWRLCS 319
Query: 300 LTQVEEVKILTRMMPILASTILMNTCLAQLQTFSVTQGAYMDPQLG-SIKVPTPSIPVIP 358
+TQVEE+K + ++P+ A+ I+ T +Q+ T V QG MD +G + ++P+ S+ +
Sbjct: 320 VTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQHMGKNFEIPSASLSLFD 379
Query: 359 LLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVEVQR---- 414
+ + PVY+ +P ARK T + G TQLQR+G+GLV+S +M AG +EV R
Sbjct: 380 TVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSIFAMITAGVLEVVRLDYV 439
Query: 415 --RNAFNQMPPKQI--SLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTF 470
NA++Q KQI S+FW QY + G A++FT +G LEFFY +AP MR+L ++ +
Sbjct: 440 KTHNAYDQ---KQIHMSIFWQIPQYLLIGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSL 496
Query: 471 LSLSFGNFLSSVFVDIINAVTKRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLY 530
+++ GN+LS+V V ++ +TK+ K GW+ ++N+ + + F++ LA LS LNF++Y
Sbjct: 497 TTVALGNYLSTVLVTVVMKITKK--NGKPGWIP-DNLNRGHLDYFFYLLATLSFLNFLVY 553
Query: 531 LYAAAWY 537
L+ + Y
Sbjct: 554 LWISKRY 560
|
Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSE8|PTR35_ARATH Putative peptide/nitrate transporter At3g25280 OS=Arabidopsis thaliana GN=At3g25280 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 336 bits (861), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 193/548 (35%), Positives = 315/548 (57%), Gaps = 42/548 (7%)
Query: 1 MEDKVATIKQK-------GGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGA 53
ME+K K K GG RA + V+ +EN+ FIAN + V YF MH+ A A
Sbjct: 5 MEEKFEDWKGKEAIPGKHGGIRAASIVCVVVMMENIVFIANGFNFVKYFMGSMHYTPATA 64
Query: 54 SNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDC 113
+N +TN MG++FLL L GGFI+D+F++ F T ++F +E++ L+++T QA++ KL P
Sbjct: 65 ANMVTNFMGTSFLLTLFGGFIADSFVTHFTTFIVFCCIELMGLILLTFQAHNPKLLPEKD 124
Query: 114 GKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLL 173
S ++ +A + L A+G+GG++ +LP+ G Q D ++P + ++ +F++
Sbjct: 125 KTPSTLQ---SAILFTGLYAMAIGTGGLKASLPSHGGDQIDRRNP---RLISRFFDWLYF 178
Query: 174 TTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRV 233
+ ++ VT ++++ +K W F IS + +G PFYR ++P SPL ++
Sbjct: 179 SICSGCLLAVTVVLWIEEKKGWIWSFNISVGILATALCIFTVGLPFYRFKRPNGSPLKKI 238
Query: 234 SQVVVVAIKNRKLSLPENPEELYEINEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAA 293
+ V++ A +NR N +L E + + + H N+ + +DKA + K+ +E
Sbjct: 239 AIVIISAARNR------NKSDLDEEMMRGLISIYKNNSH-NKLKWIDKATL-NKNISE-- 288
Query: 294 PWRVCTLTQVEEVKILTRMMPILASTILMNTCLAQLQTFSVTQGAYMDPQL-GSIKVPTP 352
T+VEE + ++PI STI+M+ C+AQL TFS QG M+ +L S ++P P
Sbjct: 289 -------TEVEETRTFLGLLPIFGSTIVMSCCVAQLSTFSAQQGMLMNKKLFHSFEIPVP 341
Query: 353 SIPVIPLLFMSILLPVYELLFVPFARKI---TGHPSGITQLQRVGVGLVLSAVSMTIAGF 409
S+ IPL+FM + +P+YE F +KI + S L+R+G+GL LS+VSM ++
Sbjct: 342 SLTAIPLIFMLLSIPLYEF----FGKKISSGNNNRSSSFNLKRIGLGLALSSVSMAVSAI 397
Query: 410 VEVQRRNAFNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFT 469
VE +R++ +IS+ WL FQY + ++DM TL G+LEFFY+EAP+ M+++ST+
Sbjct: 398 VEAKRKHEVVH-NNFRISVLWLVFQYLMLSVSDMLTLGGMLEFFYREAPSNMKSISTALG 456
Query: 470 FLSLSFGNFLSSVFVDIINAVTKRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVL 529
+ S + G FLS+ V++ NAVT R+ WL G D+NK LFY L +L+ LN +
Sbjct: 457 WCSTALGFFLSTTLVEVTNAVTGRL---GHQWLGGEDLNKTRLELFYVLLCVLNTLNLLN 513
Query: 530 YLYAAAWY 537
Y++ A Y
Sbjct: 514 YIFWAKRY 521
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 335 bits (860), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 176/542 (32%), Positives = 300/542 (55%), Gaps = 16/542 (2%)
Query: 9 KQKGGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLC 68
++ G ++AC FI E + + A +++ Y ++H A+ +T G+ +L
Sbjct: 40 EKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNVTTWQGTCYLTP 99
Query: 69 LVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAY-- 126
L+G ++D + R+ T F + + + +T+ A L P +C C A Y
Sbjct: 100 LIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAECIGDFCPSATPAQYAM 159
Query: 127 FYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAI 186
F+ L L ALG+GG++ + + GA QFD+ D + AS+FN+F + + A++ + +
Sbjct: 160 FFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFFNWFYFSINIGALVSSSLL 219
Query: 187 VYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQVVVVAIKNRKL 246
V++ + W GF I ++ + + G P YR Q+PG SP+ R+SQVVV + + +
Sbjct: 220 VWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGSPITRISQVVVASFRKSSV 279
Query: 247 SLPENPEELYEINEKER-VGTEERIPHTNQFRCLDKAAIVPKDSTEAAP----WRVCTLT 301
+PE+ LYE +K + +I HT+ + LDKAA++ ++ +++ WR+CT+T
Sbjct: 280 KVPEDATLLYETQDKNSAIAGSRKIEHTDDCQYLDKAAVISEEESKSGDYSNSWRLCTVT 339
Query: 302 QVEEVKILTRMMPILASTILMNTCLAQLQTFSVTQGAYMDPQLGSIKVPTPSIPVIPLLF 361
QVEE+KIL RM PI AS I+ + AQ+ T V QG M+ ++GS ++P ++
Sbjct: 340 QVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNCKIGSFQLPPAALGTFDTAS 399
Query: 362 MSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVEVQRRNAFNQM 421
+ I +P+Y+ VP ARK TG G T++QR+G+GL +S + M A VE+ R + N +
Sbjct: 400 VIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVLCMAAAAIVEIIRLHMANDL 459
Query: 422 ------PPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLSF 475
P IS+ W QY I G A++F +G LEFFY ++P MR+L ++ L+ +
Sbjct: 460 GLVESGAPVPISVLWQIPQYFILGAAEVFYFIGQLEFFYDQSPDAMRSLCSALALLTNAL 519
Query: 476 GNFLSSVFVDIINAVTKRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYLYAAA 535
GN+LSS+ + ++ T R ++GW+ ++N + + F+W LA LS++N +Y ++AA
Sbjct: 520 GNYLSSLILTLVTYFTTR--NGQEGWIS-DNLNSGHLDYFFWLLAGLSLVNMAVYFFSAA 576
Query: 536 WY 537
Y
Sbjct: 577 RY 578
|
Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 537 | ||||||
| 225450417 | 736 | PREDICTED: probable peptide/nitrate tran | 0.979 | 0.714 | 0.703 | 0.0 | |
| 296089862 | 626 | unnamed protein product [Vitis vinifera] | 0.979 | 0.840 | 0.703 | 0.0 | |
| 357441977 | 606 | Peptide transporter PTR1 [Medicago trunc | 0.979 | 0.867 | 0.699 | 0.0 | |
| 356505723 | 582 | PREDICTED: nitrate transporter 1.2-like | 0.979 | 0.903 | 0.682 | 0.0 | |
| 356574054 | 618 | PREDICTED: probable peptide/nitrate tran | 0.988 | 0.859 | 0.685 | 0.0 | |
| 357511669 | 585 | Peptide transporter PTR1 [Medicago trunc | 0.979 | 0.899 | 0.682 | 0.0 | |
| 356534943 | 604 | PREDICTED: probable peptide/nitrate tran | 0.992 | 0.882 | 0.688 | 0.0 | |
| 255543056 | 640 | nitrate transporter, putative [Ricinus c | 0.979 | 0.821 | 0.677 | 0.0 | |
| 449454111 | 662 | PREDICTED: probable peptide/nitrate tran | 0.979 | 0.794 | 0.662 | 0.0 | |
| 224124288 | 623 | predicted protein [Populus trichocarpa] | 0.990 | 0.853 | 0.657 | 0.0 |
| >gi|225450417|ref|XP_002276071.1| PREDICTED: probable peptide/nitrate transporter At1g59740-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 777 bits (2006), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/527 (70%), Positives = 444/527 (84%), Gaps = 1/527 (0%)
Query: 11 KGGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLV 70
KGGFRA FI++L+SLENMGF+AN +S+ YF MHF+L+GA+NTLTN MG+TFLL LV
Sbjct: 140 KGGFRASMFIYILTSLENMGFVANMVSLFSYFYGLMHFDLSGAANTLTNFMGATFLLSLV 199
Query: 71 GGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYAS 130
GGF+SDT LSR TCLIFGT+E+L L+++T+QAYS KLHP DCGK SCV+GG A FY S
Sbjct: 200 GGFVSDTLLSRLNTCLIFGTIELLGLMLMTIQAYSNKLHPADCGKPSCVEGGTAVMFYVS 259
Query: 131 LCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVS 190
LCLYALGSGGVRGALPALGA QF++KDP A+ALAS+FN+ +L+ T+ A +GVT IV+VS
Sbjct: 260 LCLYALGSGGVRGALPALGADQFNQKDPNEAEALASFFNWVILSATVGASVGVTVIVWVS 319
Query: 191 TEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQVVVVAIKNRKLSLPE 250
+ W+ GF IS + FIGFI L +G+ FYR Q G+SP++R QV+VVAIKNR LS PE
Sbjct: 320 STVTWYWGFFISLVTAFIGFIVLALGRRFYRIQPHGQSPIIRTVQVIVVAIKNRSLSPPE 379
Query: 251 NPEELYEINEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVKILT 310
+P ELYEIN++ T+ ++ HT+QFRCLDKAAI+ KDS E PW VCT+TQVEEVKILT
Sbjct: 380 SPGELYEINDQVTDFTDPKLAHTDQFRCLDKAAILGKDS-EPRPWEVCTVTQVEEVKILT 438
Query: 311 RMMPILASTILMNTCLAQLQTFSVTQGAYMDPQLGSIKVPTPSIPVIPLLFMSILLPVYE 370
RM+PIL STI+MNTCLAQLQTFSV QG MD LGS +VP SIP+IPL+FMSIL+P+YE
Sbjct: 439 RMLPILFSTIIMNTCLAQLQTFSVHQGNEMDRFLGSFEVPASSIPIIPLVFMSILIPIYE 498
Query: 371 LLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVEVQRRNAFNQMPPKQISLFW 430
+FVPFARKITGHP+GITQLQRVG+GLVLSA+SM +AG VEV+RRN ++PP++ISLFW
Sbjct: 499 FVFVPFARKITGHPAGITQLQRVGIGLVLSAISMAVAGLVEVKRRNEALEIPPRKISLFW 558
Query: 431 LSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLSFGNFLSSVFVDIINAV 490
LSFQY IFGIADMFTLVGLLEFFYKEAP GMR+LSTSFT++SLSFG FLS++FVDIIN+V
Sbjct: 559 LSFQYGIFGIADMFTLVGLLEFFYKEAPKGMRSLSTSFTWVSLSFGYFLSTIFVDIINSV 618
Query: 491 TKRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYLYAAAWY 537
TKRI PSKQGWLHG+ INKNN NLFY+FLAILS +NFV YLY A+WY
Sbjct: 619 TKRIAPSKQGWLHGSYINKNNLNLFYYFLAILSCINFVNYLYWASWY 665
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296089862|emb|CBI39681.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 775 bits (2000), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/527 (70%), Positives = 444/527 (84%), Gaps = 1/527 (0%)
Query: 11 KGGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLV 70
KGGFRA FI++L+SLENMGF+AN +S+ YF MHF+L+GA+NTLTN MG+TFLL LV
Sbjct: 30 KGGFRASMFIYILTSLENMGFVANMVSLFSYFYGLMHFDLSGAANTLTNFMGATFLLSLV 89
Query: 71 GGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYAS 130
GGF+SDT LSR TCLIFGT+E+L L+++T+QAYS KLHP DCGK SCV+GG A FY S
Sbjct: 90 GGFVSDTLLSRLNTCLIFGTIELLGLMLMTIQAYSNKLHPADCGKPSCVEGGTAVMFYVS 149
Query: 131 LCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVS 190
LCLYALGSGGVRGALPALGA QF++KDP A+ALAS+FN+ +L+ T+ A +GVT IV+VS
Sbjct: 150 LCLYALGSGGVRGALPALGADQFNQKDPNEAEALASFFNWVILSATVGASVGVTVIVWVS 209
Query: 191 TEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQVVVVAIKNRKLSLPE 250
+ W+ GF IS + FIGFI L +G+ FYR Q G+SP++R QV+VVAIKNR LS PE
Sbjct: 210 STVTWYWGFFISLVTAFIGFIVLALGRRFYRIQPHGQSPIIRTVQVIVVAIKNRSLSPPE 269
Query: 251 NPEELYEINEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVKILT 310
+P ELYEIN++ T+ ++ HT+QFRCLDKAAI+ KDS E PW VCT+TQVEEVKILT
Sbjct: 270 SPGELYEINDQVTDFTDPKLAHTDQFRCLDKAAILGKDS-EPRPWEVCTVTQVEEVKILT 328
Query: 311 RMMPILASTILMNTCLAQLQTFSVTQGAYMDPQLGSIKVPTPSIPVIPLLFMSILLPVYE 370
RM+PIL STI+MNTCLAQLQTFSV QG MD LGS +VP SIP+IPL+FMSIL+P+YE
Sbjct: 329 RMLPILFSTIIMNTCLAQLQTFSVHQGNEMDRFLGSFEVPASSIPIIPLVFMSILIPIYE 388
Query: 371 LLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVEVQRRNAFNQMPPKQISLFW 430
+FVPFARKITGHP+GITQLQRVG+GLVLSA+SM +AG VEV+RRN ++PP++ISLFW
Sbjct: 389 FVFVPFARKITGHPAGITQLQRVGIGLVLSAISMAVAGLVEVKRRNEALEIPPRKISLFW 448
Query: 431 LSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLSFGNFLSSVFVDIINAV 490
LSFQY IFGIADMFTLVGLLEFFYKEAP GMR+LSTSFT++SLSFG FLS++FVDIIN+V
Sbjct: 449 LSFQYGIFGIADMFTLVGLLEFFYKEAPKGMRSLSTSFTWVSLSFGYFLSTIFVDIINSV 508
Query: 491 TKRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYLYAAAWY 537
TKRI PSKQGWLHG+ INKNN NLFY+FLAILS +NFV YLY A+WY
Sbjct: 509 TKRIAPSKQGWLHGSYINKNNLNLFYYFLAILSCINFVNYLYWASWY 555
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357441977|ref|XP_003591266.1| Peptide transporter PTR1 [Medicago truncatula] gi|355480314|gb|AES61517.1| Peptide transporter PTR1 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 770 bits (1988), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/529 (69%), Positives = 440/529 (83%), Gaps = 3/529 (0%)
Query: 9 KQKGGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLC 68
KQKGGFRA FIFVLS+L+NMGF+ N +S+VLYF MHF+L+ ++NTLTN MGSTFLL
Sbjct: 18 KQKGGFRASMFIFVLSALDNMGFVTNMVSLVLYFIGVMHFDLSSSANTLTNFMGSTFLLS 77
Query: 69 LVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFY 128
LVG FISDT+L+RF TCL+FG+LEV+ALVMITVQA + LHP CGKSSCV+GGIA FY
Sbjct: 78 LVGAFISDTYLNRFTTCLVFGSLEVMALVMITVQAALDNLHPKACGKSSCVEGGIAVMFY 137
Query: 129 ASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVY 188
SLCLYALG GGVRG+L A GA QFDEKDP AKALA++FN+ LL++TL +VIGVT IV+
Sbjct: 138 TSLCLYALGMGGVRGSLTAFGANQFDEKDPNEAKALATFFNWLLLSSTLGSVIGVTGIVW 197
Query: 189 VSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQVVVVAIKNRKLSL 248
VST+KAW GF I ++ + IGF+ L IGKPFYR + PGESP++R+ QV+VVA KNRKL L
Sbjct: 198 VSTQKAWHWGFFIITVASSIGFVTLAIGKPFYRIKTPGESPILRIIQVIVVAFKNRKLQL 257
Query: 249 PENPEELYEINEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVKI 308
PE+ E+LYE+ + T E+I HTNQ R LDKAAI+ ++S PW+VCT+TQVEEVKI
Sbjct: 258 PESNEQLYEVYKD---ATIEKIVHTNQMRFLDKAAILQENSESQQPWKVCTVTQVEEVKI 314
Query: 309 LTRMMPILASTILMNTCLAQLQTFSVTQGAYMDPQLGSIKVPTPSIPVIPLLFMSILLPV 368
LTRM+PILASTI+MNTCLAQLQTFSV QG M+ +LGS VP SIPVIPL+F+ L+P+
Sbjct: 315 LTRMLPILASTIVMNTCLAQLQTFSVQQGNSMNLKLGSFTVPASSIPVIPLIFLCTLIPI 374
Query: 369 YELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVEVQRRNAFNQMPPKQISL 428
YEL FVPF RKIT HPSG+TQLQRVGVGLVLSA+SMTIAGF+EV+RR+ + P K ISL
Sbjct: 375 YELFFVPFIRKITHHPSGVTQLQRVGVGLVLSAISMTIAGFIEVKRRDQGRKDPSKPISL 434
Query: 429 FWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLSFGNFLSSVFVDIIN 488
FWLSFQY IFGIADMFTLVGLLEFFY+EAP+ M++LSTSFTFLS+S G FLS+VFV++IN
Sbjct: 435 FWLSFQYAIFGIADMFTLVGLLEFFYREAPSTMKSLSTSFTFLSMSLGYFLSTVFVNVIN 494
Query: 489 AVTKRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYLYAAAWY 537
VTKRITPSKQGWL G D+N+NN NLFYWFLAILS LNF +LY A+WY
Sbjct: 495 TVTKRITPSKQGWLQGFDLNQNNLNLFYWFLAILSCLNFFNFLYWASWY 543
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356505723|ref|XP_003521639.1| PREDICTED: nitrate transporter 1.2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/529 (68%), Positives = 441/529 (83%), Gaps = 3/529 (0%)
Query: 9 KQKGGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLC 68
+ KGGF A FIFVLS+L+NMGF+AN +S+VLYF MHF+LA ++NTLTN MGST+LL
Sbjct: 24 RSKGGFMASMFIFVLSALDNMGFVANMVSIVLYFYGVMHFDLASSANTLTNFMGSTYLLS 83
Query: 69 LVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFY 128
LVGGFISDT+L+RF TCL+FG+LEVLAL M+TVQA S+ LHP CGKSSCVKGGIA FY
Sbjct: 84 LVGGFISDTYLNRFTTCLLFGSLEVLALAMLTVQAASKHLHPEACGKSSCVKGGIAVMFY 143
Query: 129 ASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVY 188
SLCL ALG GGVRG++ A GA QFDEKDP AKALAS+FN+ LL++T+ A+ GVT +V+
Sbjct: 144 TSLCLLALGMGGVRGSMTAFGADQFDEKDPTEAKALASFFNWLLLSSTVGAITGVTGVVW 203
Query: 189 VSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQVVVVAIKNRKLSL 248
VST+KAW GF I +I + +GF+ L +GK FYR + PG+SP +R++QV+VV+ KNRKLSL
Sbjct: 204 VSTQKAWHWGFFIITIASSVGFVTLALGKQFYRIKTPGDSPTLRIAQVIVVSFKNRKLSL 263
Query: 249 PENPEELYEINEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVKI 308
PE+ ELYEI++K+ T E+I HTNQ R LDKAAI+ ++S++ W++CT+TQVEEVKI
Sbjct: 264 PESHGELYEISDKD--ATAEKIAHTNQMRFLDKAAII-QESSKPQAWKICTVTQVEEVKI 320
Query: 309 LTRMMPILASTILMNTCLAQLQTFSVTQGAYMDPQLGSIKVPTPSIPVIPLLFMSILLPV 368
LTRM+PI+ASTI++NTC+AQLQTFSV QG MD +LGS+ VP PSIPVIPL+F+S+L+P+
Sbjct: 321 LTRMLPIVASTIILNTCMAQLQTFSVQQGNVMDLKLGSLTVPAPSIPVIPLVFISVLVPL 380
Query: 369 YELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVEVQRRNAFNQMPPKQISL 428
YEL FVPFARKIT HPSGITQLQRVGVGLVLSA+SM +AG VEV+RR+ + P K ISL
Sbjct: 381 YELFFVPFARKITNHPSGITQLQRVGVGLVLSAISMAVAGIVEVKRRDQGRKDPSKPISL 440
Query: 429 FWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLSFGNFLSSVFVDIIN 488
FWLSFQY IFGIADMFTLVGLLEFFY+E+PA M++LSTS T+LS S G FLS+VFV++IN
Sbjct: 441 FWLSFQYGIFGIADMFTLVGLLEFFYRESPASMKSLSTSLTWLSTSLGYFLSTVFVNVIN 500
Query: 489 AVTKRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYLYAAAWY 537
AVTKRIT SKQGWLHG D+N+NN NLFYWFLA LS LNF YLY A+ Y
Sbjct: 501 AVTKRITRSKQGWLHGFDLNQNNLNLFYWFLATLSCLNFFNYLYWASRY 549
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356574054|ref|XP_003555167.1| PREDICTED: probable peptide/nitrate transporter At1g59740-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/535 (68%), Positives = 447/535 (83%), Gaps = 4/535 (0%)
Query: 3 DKVATIKQKGGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMG 62
DK + KGGFRA FIFVLS+L+NMGF+AN +S+VLYF MHF+L+ ++NTLTN MG
Sbjct: 20 DKEVKEELKGGFRASMFIFVLSALDNMGFVANMVSLVLYFYGVMHFDLSNSANTLTNFMG 79
Query: 63 STFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGG 122
STFLL LVGGFISDT+ +R TCL+FG+LEVLALVM+TVQA + LHP CGKSSCVKGG
Sbjct: 80 STFLLSLVGGFISDTYFNRLTTCLLFGSLEVLALVMLTVQAALDHLHPDFCGKSSCVKGG 139
Query: 123 IAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIG 182
IA FY+SL L ALG GGVRG+L A GA QF EK+P+ AKALASYFN+ LL++TL ++IG
Sbjct: 140 IAVMFYSSLYLLALGMGGVRGSLTAFGADQFGEKNPQEAKALASYFNWLLLSSTLGSIIG 199
Query: 183 VTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQVVVVAIK 242
VT +V+VST+KAW GF+I ++ + IGF+ L +GKPFYR + PG+SP+ R++QV+VVA K
Sbjct: 200 VTGVVWVSTQKAWHWGFIIITVASSIGFLTLALGKPFYRIKTPGQSPISRIAQVIVVAFK 259
Query: 243 NRKLSLPENPEELYEINEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQ 302
NRKL LPE+ EELYE+ E+ T E+I HTNQ R LD+A+I+ +++ E+ PW+VCT+TQ
Sbjct: 260 NRKLPLPESNEELYEVYEE---ATLEKIAHTNQMRFLDRASIL-QENIESRPWKVCTVTQ 315
Query: 303 VEEVKILTRMMPILASTILMNTCLAQLQTFSVTQGAYMDPQLGSIKVPTPSIPVIPLLFM 362
VEEVKILTRM+PILASTI+MNTCLAQLQTFSV QG M+ +LGS VP PSIPVIPLLFM
Sbjct: 316 VEEVKILTRMLPILASTIIMNTCLAQLQTFSVQQGNVMNLKLGSFTVPAPSIPVIPLLFM 375
Query: 363 SILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVEVQRRNAFNQMP 422
SIL+P+YE FVPFARKIT HPSG+TQLQRVGVGLVLS++SMTIAG +EV+RR+ + P
Sbjct: 376 SILIPLYEFFFVPFARKITHHPSGVTQLQRVGVGLVLSSISMTIAGIIEVKRRDQGRKDP 435
Query: 423 PKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLSFGNFLSSV 482
+ ISLFWLSFQY IFGIADMFTLVGLLEFFY+EAP M++LSTSFT+LS+S G FLS++
Sbjct: 436 SRPISLFWLSFQYAIFGIADMFTLVGLLEFFYREAPVTMKSLSTSFTYLSMSLGYFLSTI 495
Query: 483 FVDIINAVTKRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYLYAAAWY 537
FVD+INAVTKR+TPSKQGWLHG D+N+NN NLFYWFLAILS LNF +LY A+WY
Sbjct: 496 FVDVINAVTKRVTPSKQGWLHGLDLNQNNLNLFYWFLAILSCLNFFNFLYWASWY 550
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357511669|ref|XP_003626123.1| Peptide transporter PTR1 [Medicago truncatula] gi|87241322|gb|ABD33180.1| TGF-beta receptor, type I/II extracellular region [Medicago truncatula] gi|355501138|gb|AES82341.1| Peptide transporter PTR1 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 746 bits (1927), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/529 (68%), Positives = 439/529 (82%), Gaps = 3/529 (0%)
Query: 9 KQKGGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLC 68
++KGGFRA FIFVLS+L+NMGF+AN +S+VLYF MHF++ ++NTLTN MGSTFLL
Sbjct: 18 RKKGGFRASMFIFVLSALDNMGFVANMVSLVLYFYGVMHFDIPSSANTLTNFMGSTFLLS 77
Query: 69 LVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFY 128
LVGGFISDT+L+RF TCL+FG+LEVLAL ++T QA S+ LHP CGKSSCVKGGI FY
Sbjct: 78 LVGGFISDTYLNRFTTCLLFGSLEVLALALVTFQAASDHLHPNACGKSSCVKGGIEFMFY 137
Query: 129 ASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVY 188
SL L ALG GGVRG++ A GA QF+EKD AKALAS+FN+ LL++TL A+ GVT +V+
Sbjct: 138 TSLSLLALGIGGVRGSMTAFGADQFEEKDSNEAKALASFFNWLLLSSTLGAITGVTGVVW 197
Query: 189 VSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQVVVVAIKNRKLSL 248
VST++AW GF I +I + IGF+ L +GKPFYR + PG+SP +R++QV+VVA KNRKLSL
Sbjct: 198 VSTQRAWHWGFFIITIASSIGFVTLALGKPFYRIKTPGDSPTIRIAQVIVVAFKNRKLSL 257
Query: 249 PENPEELYEINEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVKI 308
PE+ EELYEI++K+ GT E+I HT Q R LDKAAI P++ + PW+VCT+TQVEEVKI
Sbjct: 258 PESHEELYEISDKD--GTVEKIVHTKQMRFLDKAAI-PQEYIKPQPWKVCTVTQVEEVKI 314
Query: 309 LTRMMPILASTILMNTCLAQLQTFSVTQGAYMDPQLGSIKVPTPSIPVIPLLFMSILLPV 368
LTRM+PI+ASTI+MNTCLAQLQTFSV QG M+ +LGS VP SIPVIPL+F+SIL+P+
Sbjct: 315 LTRMLPIVASTIIMNTCLAQLQTFSVQQGNVMNLKLGSFTVPASSIPVIPLIFISILVPI 374
Query: 369 YELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVEVQRRNAFNQMPPKQISL 428
YEL FVPFARKIT HPSGITQLQRVGVGLVLS +SMT+AG VEV+RR+ + P ISL
Sbjct: 375 YELFFVPFARKITNHPSGITQLQRVGVGLVLSVISMTVAGIVEVKRRDQSRKNPSNPISL 434
Query: 429 FWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLSFGNFLSSVFVDIIN 488
FWLSFQY IFGIADMFTLVGLLEFFY+E+P+ M++LSTSFT+LS+S G FLS+VFV++IN
Sbjct: 435 FWLSFQYGIFGIADMFTLVGLLEFFYRESPSSMKSLSTSFTWLSMSIGYFLSTVFVNLIN 494
Query: 489 AVTKRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYLYAAAWY 537
VTKRITPSKQGWLHG D+N++N NLFYWFLAILS LNF YLY A+ Y
Sbjct: 495 VVTKRITPSKQGWLHGFDLNQSNLNLFYWFLAILSCLNFFNYLYWASRY 543
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356534943|ref|XP_003536010.1| PREDICTED: probable peptide/nitrate transporter At1g59740-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/539 (68%), Positives = 450/539 (83%), Gaps = 6/539 (1%)
Query: 1 MEDK-VATIKQKGGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTN 59
M DK V +QKGGFRA FIFVLS+L+NMGF+AN +S+VLYF MHF+L+ ++NTLTN
Sbjct: 1 MGDKEVKEEEQKGGFRASMFIFVLSALDNMGFVANMVSLVLYFYGVMHFDLSNSANTLTN 60
Query: 60 LMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCV 119
MGSTFLL LVGGFISDT+ +R TCL+FG+LEVLALVM+TVQA + LHP CGKSSCV
Sbjct: 61 FMGSTFLLSLVGGFISDTYFNRLTTCLLFGSLEVLALVMLTVQAGLDHLHPDYCGKSSCV 120
Query: 120 KGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEK-DPKGAKALASYFNYFLLTTTLA 178
KGGIA FY+SL L ALG GGVRG+L A GA QFDEK +P AKALAS+FN+ LL++TL
Sbjct: 121 KGGIAVMFYSSLYLLALGMGGVRGSLTAFGADQFDEKKNPGEAKALASFFNWILLSSTLG 180
Query: 179 AVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQVVV 238
++IGVT +V+VST+KAW GF+I +I + IGF+ L +GKPFYR + PG+SP++R++QV+V
Sbjct: 181 SIIGVTGVVWVSTQKAWHWGFIIITIASSIGFLTLALGKPFYRIKTPGQSPILRIAQVIV 240
Query: 239 VAIKNRKLSLPENPEELYEINEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVC 298
VA KNRKL LPE+ EELYE+ E T E+I HTNQ R LD+A+I+ +++ E+ W+VC
Sbjct: 241 VAFKNRKLPLPESDEELYEVYED---ATLEKIAHTNQMRFLDRASIL-QENIESQQWKVC 296
Query: 299 TLTQVEEVKILTRMMPILASTILMNTCLAQLQTFSVTQGAYMDPQLGSIKVPTPSIPVIP 358
T+TQVEEVKILTRM+PILASTI+MNTCLAQLQTFSV QG+ M+ +LGS VP PSIPVIP
Sbjct: 297 TVTQVEEVKILTRMLPILASTIIMNTCLAQLQTFSVQQGSVMNLKLGSFTVPAPSIPVIP 356
Query: 359 LLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVEVQRRNAF 418
LLFMSIL+P+YE FVPFARKIT HPSG+TQLQRVGVGLVLSA+SMTIAG +EV+RR+
Sbjct: 357 LLFMSILIPLYEFFFVPFARKITHHPSGVTQLQRVGVGLVLSAISMTIAGIIEVKRRDQG 416
Query: 419 NQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLSFGNF 478
+ P + ISLFWLSFQY IFG+ADMFTLVGLLEFFY+EAP M++LSTSFT+LS+S G F
Sbjct: 417 RKDPSRPISLFWLSFQYAIFGVADMFTLVGLLEFFYREAPETMKSLSTSFTYLSMSLGYF 476
Query: 479 LSSVFVDIINAVTKRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYLYAAAWY 537
LS+VFVD+INAVTKR+TPSKQGWLHG D+N+NN NLFYWFLAILS LNF +LY A+WY
Sbjct: 477 LSTVFVDVINAVTKRVTPSKQGWLHGLDLNQNNLNLFYWFLAILSCLNFFNFLYWASWY 535
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543056|ref|XP_002512591.1| nitrate transporter, putative [Ricinus communis] gi|223548552|gb|EEF50043.1| nitrate transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 735 bits (1898), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/527 (67%), Positives = 441/527 (83%), Gaps = 1/527 (0%)
Query: 11 KGGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLV 70
KGGFRAC F+FVL +L+NMGFIAN +S+VLYF M+F++ ++NTLTNLMGS FLL L+
Sbjct: 18 KGGFRACMFVFVLVALDNMGFIANMVSLVLYFLKVMYFDIPNSANTLTNLMGSIFLLTLL 77
Query: 71 GGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYAS 130
GGFISDTFL++ T L+F +E+LA+V++T+QA+++ LHPP CGK CV+G I YAS
Sbjct: 78 GGFISDTFLNKLYTVLLFAVIEILAMVLMTIQAHAKSLHPPYCGKPKCVEGKIEFTLYAS 137
Query: 131 LCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVS 190
L L ALGSGGVRGALP+LGA QF++ DP+ AK LA+YFN+ L+T L A +GVT IV+VS
Sbjct: 138 LALLALGSGGVRGALPSLGADQFNQNDPEEAKDLATYFNWMTLSTVLGAAVGVTGIVWVS 197
Query: 191 TEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQVVVVAIKNRKLSLPE 250
AW+ GF+IS+I F+GFI L GK +Y ++PGESPL+R+ QV VVAIKNRKLSLPE
Sbjct: 198 VNDAWYKGFMISTIAAFVGFIVLACGKRYYHLKEPGESPLIRIVQVFVVAIKNRKLSLPE 257
Query: 251 NPEELYEINEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVKILT 310
NPEELYEI+++ER+ ++E+I HT+QFR LD+AAI+PKD T AAPW+VCT+TQVEEVKILT
Sbjct: 258 NPEELYEISDEERIYSDEKIAHTDQFRFLDRAAILPKDLT-AAPWQVCTVTQVEEVKILT 316
Query: 311 RMMPILASTILMNTCLAQLQTFSVTQGAYMDPQLGSIKVPTPSIPVIPLLFMSILLPVYE 370
RMMPIL STI+MNTCLAQLQTFSV QG M+ +G +VP PS+P+IPL+FM IL+P+YE
Sbjct: 317 RMMPILFSTIIMNTCLAQLQTFSVEQGYIMNRFIGKFEVPAPSVPIIPLVFMVILIPMYE 376
Query: 371 LLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVEVQRRNAFNQMPPKQISLFW 430
FVPFARKI+GHPSGITQLQRVG+GLVLSA+SM +AG VEV+RR+ ++ IS+FW
Sbjct: 377 FFFVPFARKISGHPSGITQLQRVGIGLVLSAISMAVAGIVEVKRRDQAHKDLAHPISVFW 436
Query: 431 LSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLSFGNFLSSVFVDIINAV 490
LSFQY IFGIADMFTLVGLLEFFYKEAP+GM++LSTSFT+LSLSFG FLS+V V++INA+
Sbjct: 437 LSFQYGIFGIADMFTLVGLLEFFYKEAPSGMKSLSTSFTWLSLSFGYFLSTVLVNLINAI 496
Query: 491 TKRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYLYAAAWY 537
TKR+TPSKQGWLHG DIN NN NLFYWFLAILS +NF +YL A+WY
Sbjct: 497 TKRVTPSKQGWLHGDDINSNNLNLFYWFLAILSCINFGVYLCMASWY 543
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449454111|ref|XP_004144799.1| PREDICTED: probable peptide/nitrate transporter At1g59740-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/533 (66%), Positives = 420/533 (78%), Gaps = 7/533 (1%)
Query: 11 KGGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLV 70
KGGFRA FIF L + E+MGF+AN S+V YF MHF+L A+NTLTN MGS FLL L+
Sbjct: 33 KGGFRATMFIFGLLTFESMGFVANMTSLVQYFLFVMHFDLQTAANTLTNFMGSAFLLSLL 92
Query: 71 GGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYAS 130
GGF+SDT+++R TCLIFG LEV+AL++ITVQAYS L P CVKG IA FY S
Sbjct: 93 GGFLSDTYINRLNTCLIFGFLEVIALILITVQAYSHDLLPSPLCPKDCVKGRIAFVFYTS 152
Query: 131 LCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVS 190
L L A+GSGGVRGALPALGA QF++KDPK AKAL ++FNY LL+ + A +GVT IV+V+
Sbjct: 153 LYLLAIGSGGVRGALPALGADQFNQKDPKEAKALGTFFNYMLLSVVIGAAVGVTLIVWVA 212
Query: 191 TEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQVVVVAIKNRKLSLPE 250
KAW+ GF IS++ +GFI IGKPFYR Q PG+SPL+RV QV+VVAIKNR+L LP+
Sbjct: 213 VNKAWYWGFFISALAALVGFIIFAIGKPFYRIQVPGQSPLLRVIQVIVVAIKNRRLRLPD 272
Query: 251 NPEELYEINEKERVGTEE-RIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVKIL 309
P ELYEI++K + + +I HTNQ R LDKAAIVPKD E PW VC++TQVEEVKI+
Sbjct: 273 TPNELYEISDKLHMDSNHYKIVHTNQLRFLDKAAIVPKD-IEPQPWNVCSVTQVEEVKII 331
Query: 310 TRMMPILASTILMNTCLAQLQTFSVTQG--AYMDPQLGSIKVPTPSIPVIPLLFMSILLP 367
TRM+PI STI+MNTCLAQLQTFSV QG MD LG + P PSIPVIPL+FM+ L+P
Sbjct: 332 TRMVPIFVSTIIMNTCLAQLQTFSVEQGNTRIMDKSLGHFQFPAPSIPVIPLVFMAFLIP 391
Query: 368 VYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVEVQRRNAFNQMPPKQIS 427
+YE FVPFARKIT HPSGITQLQRVGVGLVLSA++MT+AG VEV+RR+ + P KQIS
Sbjct: 392 LYEFFFVPFARKITHHPSGITQLQRVGVGLVLSAIAMTVAGLVEVKRRHQATEHPDKQIS 451
Query: 428 LFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLSFGNFLSSVFVDII 487
LFWL+FQY IFG+ADMFTLVGLLEFFYKEAP GMR+LSTSFTFLSL+ G +LSS+FV+++
Sbjct: 452 LFWLAFQYGIFGVADMFTLVGLLEFFYKEAPVGMRSLSTSFTFLSLALGYYLSSIFVNVV 511
Query: 488 NAVTKRITPSKQGWLHG---TDINKNNANLFYWFLAILSVLNFVLYLYAAAWY 537
N VTK ITPSK+GW+ G D+N NN NLFYWFLAILSVLNF YLY A+WY
Sbjct: 512 NKVTKNITPSKKGWVEGLIPEDLNHNNLNLFYWFLAILSVLNFFHYLYWASWY 564
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224124288|ref|XP_002329986.1| predicted protein [Populus trichocarpa] gi|222871411|gb|EEF08542.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/540 (65%), Positives = 440/540 (81%), Gaps = 8/540 (1%)
Query: 2 EDKV----ATIKQKGGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTL 57
ED V A K +GGFRA F++ L +L++MGF+AN +S+VLYF MHF++ ++NTL
Sbjct: 17 EDHVPLGLAGKKGRGGFRATMFVYGLVALDSMGFVANMVSLVLYFMGVMHFDIPTSANTL 76
Query: 58 TNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSS 117
TNLMGSTFLL ++GGFISD +L+R T L+FG LE++ALV+IT+QA+++ +HPP CGK+S
Sbjct: 77 TNLMGSTFLLTVLGGFISDAYLNRLHTVLLFGFLEIMALVLITIQAHAKNMHPPACGKAS 136
Query: 118 CVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTL 177
CV+GGI Y SL L ALGSGGVRGALPALGA QF+EKDP+ A+ALASYFN+ L+T +
Sbjct: 137 CVEGGIEYMLYFSLGLLALGSGGVRGALPALGADQFNEKDPEEARALASYFNWMTLSTVV 196
Query: 178 AAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQVV 237
AV+GVT IV +S WW GFL+S++ TFIGF+ L GKPFY +QPG+SPL+R++QV
Sbjct: 197 GAVVGVTGIVNLSMFHGWWKGFLVSTVGTFIGFVILAAGKPFYHLRQPGDSPLIRIAQVF 256
Query: 238 VVAIKNRKLSLPENPEELYEINEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRV 297
+AI+NR+L LP+ EELYEI++KE + EE++ HT QFR LDKAAI+P + T+ APW+V
Sbjct: 257 ALAIRNRRLPLPK-VEELYEISDKETIAYEEKLEHTEQFRFLDKAAILP-EGTQPAPWKV 314
Query: 298 CTLTQVEEVKILTRMMPILASTILMNTCLAQLQTFSVTQGAYMDPQLGSIKVPTPSIPVI 357
C++TQVEEVKILTRM+PIL STI+MNTCLAQLQTFSV QG M ++G P PS+PVI
Sbjct: 315 CSVTQVEEVKILTRMLPILGSTIIMNTCLAQLQTFSVQQGNDMYRKIGKHDFPAPSVPVI 374
Query: 358 PLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVEVQRRNA 417
PL+FM IL+P YE FVPFARK TGHP+GITQLQRVGVGLVLSAVSM +AG VEV+RR+
Sbjct: 375 PLVFMVILIPAYEFFFVPFARKFTGHPAGITQLQRVGVGLVLSAVSMAVAGLVEVKRRD- 433
Query: 418 FNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLSFGN 477
+ ISLFWLSFQY IFGIADMFTLVGLL+FFYKEAP+ M++LSTSFT+LSLSFG
Sbjct: 434 -QALKGHLISLFWLSFQYGIFGIADMFTLVGLLDFFYKEAPSSMKSLSTSFTWLSLSFGY 492
Query: 478 FLSSVFVDIINAVTKRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYLYAAAWY 537
FLS+VFV++INAVTKRITPS+QGWLHG ++ NN NLFYWFLAILS LNFVLYLY+A+WY
Sbjct: 493 FLSTVFVNLINAVTKRITPSRQGWLHGQLLDYNNLNLFYWFLAILSCLNFVLYLYSASWY 552
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 537 | ||||||
| TAIR|locus:2025886 | 591 | AT1G59740 [Arabidopsis thalian | 0.973 | 0.884 | 0.412 | 1.4e-105 | |
| TAIR|locus:2196739 | 585 | NRT1:2 "AT1G69850" [Arabidopsi | 0.519 | 0.476 | 0.393 | 3.6e-103 | |
| TAIR|locus:2205769 | 567 | AT1G27040 [Arabidopsis thalian | 0.975 | 0.924 | 0.4 | 3.7e-103 | |
| TAIR|locus:2006907 | 601 | AT1G33440 [Arabidopsis thalian | 0.968 | 0.865 | 0.395 | 2.7e-100 | |
| TAIR|locus:2170683 | 589 | AT5G62730 [Arabidopsis thalian | 0.953 | 0.869 | 0.354 | 1e-84 | |
| TAIR|locus:2181655 | 624 | AT5G13400 [Arabidopsis thalian | 0.981 | 0.844 | 0.352 | 1.7e-84 | |
| TAIR|locus:2150124 | 570 | PTR5 "peptide transporter 5" [ | 0.986 | 0.929 | 0.324 | 4.5e-82 | |
| TAIR|locus:2090230 | 521 | AT3G25280 [Arabidopsis thalian | 0.422 | 0.435 | 0.390 | 3.6e-80 | |
| TAIR|locus:2043803 | 577 | AT2G26690 [Arabidopsis thalian | 0.964 | 0.897 | 0.344 | 1.2e-79 | |
| TAIR|locus:2080235 | 570 | PTR1 "peptide transporter 1" [ | 0.979 | 0.922 | 0.322 | 1.2e-79 |
| TAIR|locus:2025886 AT1G59740 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1045 (372.9 bits), Expect = 1.4e-105, P = 1.4e-105
Identities = 220/533 (41%), Positives = 323/533 (60%)
Query: 12 GGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVG 71
GG RA F+ L + E MG A +++ Y NEMHF L+ A+N +TN +G+ F+ L+G
Sbjct: 43 GGMRAALFVLGLQAFEIMGIAAVGNNLITYVINEMHFPLSKAANIVTNFVGTIFIFALLG 102
Query: 72 GFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGK---SSC--VKGGIAAY 126
G++SD FL F T +IFG +E+ ++++VQA+ +L PP C +C KG A
Sbjct: 103 GYLSDAFLGSFWTIIIFGFVELSGFILLSVQAHLPQLKPPKCNPLIDQTCEEAKGFKAMI 162
Query: 127 FYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAI 186
F+ +L L ALGSG V+ + A GA QF + PK +K L+SYFN ++ +I +T +
Sbjct: 163 FFMALYLVALGSGCVKPNMIAHGADQFSQSHPKQSKRLSSYFNAAYFAFSMGELIALTLL 222
Query: 187 VYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLXXXXXXXXXAIKNRKL 246
V+V T GF +S+ +G I+LV G ++RN++P S AI RKL
Sbjct: 223 VWVQTHSGMDIGFGVSAAAMTMGIISLVSGTMYFRNKRPRRSIFTPIAHVIVAAILKRKL 282
Query: 247 SLPENPEELY-EINEKERVGTEERIPHTNQFRCLDKAAIVPKDS-TEAAPWRVCTLTQVE 304
+ P +P L+ + + V +PHT +FR LDKA I +D+ T+ +PWR+CT+TQVE
Sbjct: 283 ASPSDPRMLHGDHHVANDVVPSSTLPHTPRFRFLDKACIKIQDTNTKESPWRLCTVTQVE 342
Query: 305 EVKILTRMMPILASTILMNTCLAQLQTFSVTQGAYMDPQLG-SIKVPTPSIPVIPLLFMS 363
+VK L ++PI ASTI+ NT LAQLQTFSV QG+ M+ +L S +P S+ IP + +
Sbjct: 343 QVKTLISLVPIFASTIVFNTILAQLQTFSVQQGSSMNTRLSNSFHIPPASLQAIPYIMLI 402
Query: 364 ILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVEVQRRNAFNQMPP 423
L+P+Y+ VPFARK+TGH SGI L R+G+GL LS SM A +E +RR++ + +
Sbjct: 403 FLVPLYDSFLVPFARKLTGHNSGIPPLTRIGIGLFLSTFSMVSAAMLEKKRRDS-SVLDG 461
Query: 424 KQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRXXXXXXXXXXXXXXXXXXXVF 483
+ +S+FW++ Q+ IFGI++MFT VGL+EFFYK++ GM V
Sbjct: 462 RILSIFWITPQFLIFGISEMFTAVGLIEFFYKQSAKGMESFLMALTYCSYSFGFYFSSVL 521
Query: 484 VDIINAVTKRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYLYAAAW 536
V ++N +T SK GWL D+NK+ +LFYW LA+LS+LNF+ YL+ + W
Sbjct: 522 VSVVNKITSTSVDSK-GWLGENDLNKDRLDLFYWLLAVLSLLNFLSYLFWSRW 573
|
|
| TAIR|locus:2196739 NRT1:2 "AT1G69850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 555 (200.4 bits), Expect = 3.6e-103, Sum P(2) = 3.6e-103
Identities = 116/295 (39%), Positives = 171/295 (57%)
Query: 253 EELYEINEKERVGTEERIPH----TNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVKI 308
+E+ E E+ EE +P TN + L+ AA D CT+ QVE+VKI
Sbjct: 288 KEVESQGELEKPRQEEALPPRAQLTNSLKVLNGAA----DEKPVHRLLECTVQQVEDVKI 343
Query: 309 LTRMMPILASTILMNTCLAQLQTFSVTQGAYMDPQLGSIKVPTPSIPVIPLLFMSILLPV 368
+ +M+PI A TI++N CLAQL TFSV Q A M+ ++GS+K+P S+P+ P++F+ IL P+
Sbjct: 344 VLKMLPIFACTIMLNCCLAQLSTFSVQQAASMNTKIGSLKIPPASLPIFPVVFIMILAPI 403
Query: 369 YELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVEVQRRNAFNQ---MPPKQ 425
Y+ L +PFARK T +G+T LQR+GVGLVLS ++M +A VE++R+ + K+
Sbjct: 404 YDHLIIPFARKATKTETGVTHLQRIGVGLVLSILAMAVAALVEIKRKGVAKDSGLLDSKE 463
Query: 426 ---ISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRXXXXXXXXXXXXXXXXXXXV 482
++ W++ QY G AD+FTL GLLE+F+ EAP+ MR V
Sbjct: 464 TLPVTFLWIALQYLFLGSADLFTLAGLLEYFFTEAPSSMRSLATSLSWASLAMGYYLSSV 523
Query: 483 FVDIINAVTKRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYLYAAAWY 537
V I+N++T + WL G IN+ + FYW + +LS NF+ YL+ A Y
Sbjct: 524 IVSIVNSITG--SSGNTPWLRGKSINRYKLDYFYWLMCVLSAANFLHYLFWAMRY 576
|
|
| TAIR|locus:2205769 AT1G27040 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1022 (364.8 bits), Expect = 3.7e-103, P = 3.7e-103
Identities = 220/550 (40%), Positives = 321/550 (58%)
Query: 3 DKVATIKQKGGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMG 62
+K A + GG A F+ + LEN+ F+ANA ++VLY KN MH +LA +S+ +T M
Sbjct: 20 NKAALRGRHGGMLAASFVLAVEILENLAFLANASNLVLYLKNFMHMSLARSSSEVTTFMA 79
Query: 63 STFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSS---C- 118
+ FLL L+GGF++D F S F LI ++E L L+++T+QA L PP C S+ C
Sbjct: 80 TAFLLALLGGFLADAFFSTFVIFLISASIEFLGLILLTIQARRPSLMPPPCKSSAALRCE 139
Query: 119 VKGGI-AAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTL 177
V GG AA+ + L L +LG GG++G+LP+ GA QFDE PKG K +++FNY++ +
Sbjct: 140 VVGGSKAAFLFVGLYLVSLGIGGIKGSLPSHGAEQFDEGTPKGRKQRSTFFNYYVFCLSC 199
Query: 178 AAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLXXXXXXX 237
A++ VT +V++ K W GF +S+I F+ + ++G FY+N+ P SPL
Sbjct: 200 GALVAVTFVVWIEDNKGWEWGFGVSTISIFLSILVFLLGSRFYKNKIPRGSPLTTIFKVL 259
Query: 238 XXA-IKNRKLSLPENPEELYEINEKERVGTEERIPH---TNQFRCLDKAAIVPKDSTEAA 293
A I + N E+ + EE+ P TN CL+KA + T
Sbjct: 260 LAASIVSCSSKTSSNHFTSREVQSEH----EEKTPSQSLTNSLTCLNKAI---EGKTHHI 312
Query: 294 PWRVCTLTQVEEVKILTRMMPILASTILMNTCLAQLQTFSVTQGAYMDPQLGSIKVPTPS 353
W CT+ QVE+VKI+ +M+PI TI++N CLAQL T+SV Q A M+ ++ + VP+ S
Sbjct: 313 -WLECTVQQVEDVKIVLKMLPIFGCTIMLNCCLAQLSTYSVHQAATMNRKIVNFNVPSAS 371
Query: 354 IPVIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVEVQ 413
+PV P++FM IL P Y+ L +PFARK+T GIT LQR+GVGLVLS V+M +A VE++
Sbjct: 372 LPVFPVVFMLILAPTYDHLIIPFARKVTKSEIGITHLQRIGVGLVLSIVAMAVAALVELK 431
Query: 414 RRNAFNQ---MPPKQ---ISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRXXXXX 467
R+ + + ++ I+ W++ QY G AD+FTL GLLEFF+ EAP+ MR
Sbjct: 432 RKQVAREAGLLDSEETLPITFLWIALQYLFLGSADLFTLAGLLEFFFTEAPSSMRSLATS 491
Query: 468 XXXXXXXXXXXXXXVFVDIINAVTKRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNF 527
V V I+N VTK + + WL G +N+N +LFYW + +LSV+NF
Sbjct: 492 LSWASLALGYYLSSVMVPIVNRVTK--SAGQSPWL-GEKLNRNRLDLFYWLMCVLSVVNF 548
Query: 528 VLYLYAAAWY 537
+ YL+ A Y
Sbjct: 549 LHYLFWAKRY 558
|
|
| TAIR|locus:2006907 AT1G33440 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 995 (355.3 bits), Expect = 2.7e-100, P = 2.7e-100
Identities = 211/534 (39%), Positives = 313/534 (58%)
Query: 12 GGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVG 71
GG RA F+ + E M A +++ Y NEMHF L+ ++N +TN +G+ FLL L+G
Sbjct: 40 GGTRAALFVLGFQAFEMMAIAAVGNNLITYVFNEMHFPLSKSANLVTNFIGTVFLLSLLG 99
Query: 72 GFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSS----CVK--GGIAA 125
GF+SD++L F T L+FG +E+ ++++VQA+ +L PP+C S CV+ G AA
Sbjct: 100 GFLSDSYLGSFRTMLVFGVIEISGFILLSVQAHLPELRPPECNMKSTTIHCVEANGYKAA 159
Query: 126 YFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTA 185
Y +LCL ALGSG ++ + + GA QF KD + L+S+FN ++ +I +T
Sbjct: 160 TLYTALCLVALGSGCLKPNIISHGANQFQRKD---LRKLSSFFNAAYFAFSMGQLIALTL 216
Query: 186 IVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLXXXXXXXXXAIKNRK 245
+V+V T GF +S+ V G I+LV G FYRN+ P S AI RK
Sbjct: 217 LVWVQTHSGMDVGFGVSAAVMAAGMISLVAGTSFYRNKPPSGSIFTPIAQVFVAAITKRK 276
Query: 246 LSLPENPEELYEINEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEE 305
P NP +++ + + V + + H+N+FR LDKA I + +PWR+CT+ QV +
Sbjct: 277 QICPSNPNMVHQPST-DLVRVKPLL-HSNKFRFLDKACIKTQGKAMESPWRLCTIEQVHQ 334
Query: 306 VKILTRMMPILASTILMNTCLAQLQTFSVTQGAYMDPQLG-SIKVPTPSIPVIPLLFMSI 364
VKIL ++PI A TI+ NT LAQLQTFSV QG+ M+ + + ++P S+ IP + +
Sbjct: 335 VKILLSVIPIFACTIIFNTILAQLQTFSVQQGSSMNTHITKTFQIPPASLQAIPYIILIF 394
Query: 365 LLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVEVQRRNAFNQMPPK 424
+P+YE FVP ARK+TG+ SGI+ LQR+G GL L+ SM A VE +RR +F +
Sbjct: 395 FVPLYETFFVPLARKLTGNDSGISPLQRIGTGLFLATFSMVAAALVEKKRRESFLEQNV- 453
Query: 425 QISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRXXXXXXXXXXXXXXXXXXXVFV 484
+S+FW++ Q+ IFG+++MFT VGL+EFFYK++ M+ V V
Sbjct: 454 MLSIFWIAPQFLIFGLSEMFTAVGLVEFFYKQSSQSMQSFLTAMTYCSYSFGFYLSSVLV 513
Query: 485 DIINAVTKRI-TPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYLYAAAWY 537
+N VT + +K+GWL D+NK+ + FYW LA LS +NF YL+ + WY
Sbjct: 514 STVNRVTSSNGSGTKEGWLGDNDLNKDRLDHFYWLLASLSFINFFNYLFWSRWY 567
|
|
| TAIR|locus:2170683 AT5G62730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 848 (303.6 bits), Expect = 1.0e-84, P = 1.0e-84
Identities = 191/539 (35%), Positives = 287/539 (53%)
Query: 12 GGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVG 71
GG A F+ V+ LEN+ F+ANA ++VLY +M F+ +GA+N +T MG+ F L L+G
Sbjct: 58 GGMLAASFVLVVEVLENLAFLANASNLVLYLSTKMGFSPSGAANAVTAFMGTAFFLALLG 117
Query: 72 GFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASL 131
GF++D F + F L+ +E L L+++TVQA+ P + + L
Sbjct: 118 GFLADAFFTTFHIYLVSAAIEFLGLMVLTVQAHEHSTEPWS-----------RVFLFVGL 166
Query: 132 CLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVST 191
L ALG GG++G+LP GA QFDE+ G + + +FNYF+ + + A+I VT +V++
Sbjct: 167 YLVALGVGGIKGSLPPHGAEQFDEETSSGRRQRSFFFNYFIFSLSCGALIAVTVVVWLED 226
Query: 192 EKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLXXXXXXXXXAI--KNRKLSLP 249
K W GF +S+ I + G YR + P SP+ A+ K +K
Sbjct: 227 NKGWSYGFGVSTAAILISVPVFLAGSRVYRLKVPSGSPITTLFKVLTAALYAKYKKRRTS 286
Query: 250 ENPEELYEINEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVKIL 309
+ N+ + T++ + F +V + + P R CT QV++VKI+
Sbjct: 287 RIVVTCHTRNDCDDSVTKQNCDGDDGFLGSFLGEVVRERESLPRPLR-CTEEQVKDVKIV 345
Query: 310 TRMMPILASTILMNTCLAQLQTFSVTQGAYMDPQLGSIKVPTPSIPVIPLLFMSILLPVY 369
+++PI STI++N CLAQL TFSV Q + M+ +LGS VP ++PV P++FM IL P Y
Sbjct: 346 IKILPIFMSTIMLNCCLAQLSTFSVQQASTMNTKLGSFTVPPAALPVFPVVFMMILAPTY 405
Query: 370 ELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVEVQRRNAF-----NQ---- 420
L +P ARK T +GIT LQR+G GLVLS V+M +A VE +R++ N
Sbjct: 406 NHLLLPLARKSTKTETGITHLQRIGTGLVLSIVAMAVAALVETKRKHVVVSCCSNNNSSS 465
Query: 421 --MPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRXXXXXXXXXXXXXXXX 478
P I+ W++ QY G AD+FTL G++EFF+ EAP+ MR
Sbjct: 466 YSSSPLPITFLWVAIQYVFLGSADLFTLAGMMEFFFTEAPSTMRSLATSLSWASLAMGYY 525
Query: 479 XXXVFVDIINAVTKRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYLYAAAWY 537
V V +N VT WL G ++N+ + FYW + +LS +NF+ YL+ A+ Y
Sbjct: 526 FSSVLVSAVNFVTG--LNHHNPWLLGENLNQYHLERFYWLMCVLSGINFLHYLFWASRY 582
|
|
| TAIR|locus:2181655 AT5G13400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 846 (302.9 bits), Expect = 1.7e-84, P = 1.7e-84
Identities = 196/556 (35%), Positives = 296/556 (53%)
Query: 5 VATIKQKGGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGST 64
+A + + GG+ A FIF E M + +++MV + MH +SN + N +G +
Sbjct: 59 IANLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGIS 118
Query: 65 FLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPD---CGKSSCVKG 121
++GGF++D +L R+ T IF T+ ++ L+ IT+ A S K+ PD CG+ S + G
Sbjct: 119 QASSVLGGFLADAYLGRYWTIAIFTTMYLVGLIGITLGA-SLKMFVPDQSNCGQLSLLLG 177
Query: 122 GIAA-------YFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLT 174
Y Y L + G+ G+R + + GA QFDEK L +FN+F L+
Sbjct: 178 NCEEAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLS 237
Query: 175 TTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLXXXX 234
TL A+I T +VYV E W F ++ I G P YR++ PG SPL
Sbjct: 238 VTLGAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVA 297
Query: 235 XXXXXAIKNRKLSLPENPE-ELYEI-NEKERVGTEERIPHTNQFRCLDKAAI-VPKDSTE 291
A + R + + LYE+ K + +IPH+N F LDKAA+ + +D E
Sbjct: 298 QVLVAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHSNDFIWLDKAALELKEDGLE 357
Query: 292 AAPWRVCTLTQVEEVKILTRMMPILASTILMNTCLAQLQTFSVTQGAYMDPQLGSIKVPT 351
+PW++CT+TQVEEVKIL R++PI TI+++ L + T SV Q ++ + +K+P
Sbjct: 358 PSPWKLCTVTQVEEVKILIRLIPIPTCTIMLSLVLTEYLTLSVQQAYTLNTHIQHLKLPV 417
Query: 352 PSIPVIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVE 411
+PV P L + ++L +Y +FVP R+ITG+P G +QLQRVG+GL +S +S+ AG E
Sbjct: 418 TCMPVFPGLSIFLILSLYYSVFVPITRRITGNPHGASQLQRVGIGLAVSIISVAWAGLFE 477
Query: 412 VQRRN-------AFN---QMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGM 461
RR+ FN QMP ++ +WL QYC+ GIA++F +VGLLEF Y+EAP M
Sbjct: 478 NYRRHYAIQNGFEFNFLTQMP--DLTAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAM 535
Query: 462 RXXXXXXXXXXXXXXXXXXXVFVDIINAVTKRITPSKQGWLHGTDINKNNANLFYWFLAI 521
+ + +I+ A T R + K WL +IN + YW L +
Sbjct: 536 KSIGSAYAALAGGLGCFAATILNNIVKAAT-RDSDGKS-WL-SQNINTGRFDCLYWLLTL 592
Query: 522 LSVLNFVLYLYAAAWY 537
LS LNF ++L++A Y
Sbjct: 593 LSFLNFCVFLWSAHRY 608
|
|
| TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 823 (294.8 bits), Expect = 4.5e-82, P = 4.5e-82
Identities = 177/546 (32%), Positives = 291/546 (53%)
Query: 4 KVATIKQKGGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGS 63
K A + G ++AC FI E + + + +++ Y + +M+ AS +++N G+
Sbjct: 19 KPANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSVSNWSGT 78
Query: 64 TFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGI 123
+ L+G FI+D +L R+ T F + + + ++T+ A L P G++ G
Sbjct: 79 CYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTPTCSGETCHATAGQ 138
Query: 124 AAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGV 183
A + +L L ALG+GG++ + + GA QFD+ D K ++ +S+FN+F + A+I
Sbjct: 139 TAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFFNWFYFVINVGAMIAS 198
Query: 184 TAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLXXXXXXXXXAIKN 243
+ +V++ W G + ++ I + G FYR Q+PG SPL + +
Sbjct: 199 SVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGSPLTRMLQVIVASCRK 258
Query: 244 RKLSLPENPEELYEINEKER--VGTEERIPHTNQFRCLDKAAIVP----KDSTEAAPWRV 297
K+ +PE+ LYE + E +G+ ++ HT DKAA+ K + +++ W++
Sbjct: 259 SKVKIPEDESLLYENQDAESSIIGSR-KLEHTKILTFFDKAAVETESDNKGAAKSSSWKL 317
Query: 298 CTLTQVEEVKILTRMMPILASTILMNTCLAQLQTFSVTQGAYMDPQLG-SIKVPTPSIPV 356
CT+TQVEE+K L R++PI A+ I+ + +Q+ T V QG +D +G + K+P+ S+ +
Sbjct: 318 CTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQHMGPNFKIPSASLSL 377
Query: 357 IPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVEVQRRN 416
L + PVY+ L VPFARK TGH G TQLQR+G+GLV+S SM AG +EV R N
Sbjct: 378 FDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISIFSMVSAGILEVARLN 437
Query: 417 ---AFNQMPPKQI--SLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRXXXXXXXXX 471
N + I ++FW QY + G A++FT +G LEFFY +AP MR
Sbjct: 438 YVQTHNLYNEETIPMTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLT 497
Query: 472 XXXXXXXXXXVFVDIINAVTKRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYL 531
V ++ VT+ + + GW+ ++N + + F+W LA LS LNF++YL
Sbjct: 498 AIAFGNYLSTFLVTLVTKVTR--SGGRPGWI-AKNLNNGHLDYFFWLLAGLSFLNFLVYL 554
Query: 532 YAAAWY 537
+ A WY
Sbjct: 555 WIAKWY 560
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| TAIR|locus:2090230 AT3G25280 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 431 (156.8 bits), Expect = 3.6e-80, Sum P(2) = 3.6e-80
Identities = 95/243 (39%), Positives = 141/243 (58%)
Query: 301 TQVEEVKILTRMMPILASTILMNTCLAQLQTFSVTQGAYMDPQL-GSIKVPTPSIPVIPL 359
T+VEE + ++PI STI+M+ C+AQL TFS QG M+ +L S ++P PS+ IPL
Sbjct: 289 TEVEETRTFLGLLPIFGSTIVMSCCVAQLSTFSAQQGMLMNKKLFHSFEIPVPSLTAIPL 348
Query: 360 LFMSILLPVYELLFVPFARKITG---HPSGITQLQRVGVGLVLSAVSMTIAGFVEVQRRN 416
+FM + +P+YE F +KI+ + S L+R+G+GL LS+VSM ++ VE +R++
Sbjct: 349 IFMLLSIPLYEF----FGKKISSGNNNRSSSFNLKRIGLGLALSSVSMAVSAIVEAKRKH 404
Query: 417 --AFNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRXXXXXXXXXXXX 474
N +IS+ WL FQY + ++DM TL G+LEFFY+EAP+ M+
Sbjct: 405 EVVHNNF---RISVLWLVFQYLMLSVSDMLTLGGMLEFFYREAPSNMKSISTALGWCSTA 461
Query: 475 XXXXXXXVFVDIINAVTKRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYLYAA 534
V++ NAVT R+ Q WL G D+NK LFY L +L+ LN + Y++ A
Sbjct: 462 LGFFLSTTLVEVTNAVTGRL--GHQ-WLGGEDLNKTRLELFYVLLCVLNTLNLLNYIFWA 518
Query: 535 AWY 537
Y
Sbjct: 519 KRY 521
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| TAIR|locus:2043803 AT2G26690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 800 (286.7 bits), Expect = 1.2e-79, P = 1.2e-79
Identities = 188/545 (34%), Positives = 286/545 (52%)
Query: 9 KQK-GGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLL 67
K K GG+ I + +E + + A+++V Y MH + ++N +T+ MG++FLL
Sbjct: 22 KSKTGGWITAALILGIEVVERLSTMGIAVNLVTYLMETMHLPSSTSANIVTDFMGTSFLL 81
Query: 68 CLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKS-SCVKGGI--A 124
CL+GGF++D+FL RF T IF T++ L + V +L PP C +C+
Sbjct: 82 CLLGGFLADSFLGRFKTIGIFSTIQALGTGALAVATKLPELRPPTCHHGEACIPATAFQM 141
Query: 125 AYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVT 184
Y SL L ALG+GG++ ++ G+ QFD+KDPK +A +FN F ++ ++ VT
Sbjct: 142 TILYVSLYLIALGTGGLKSSISGFGSDQFDDKDPKEKAHMAFFFNRFFFFISMGTLLAVT 201
Query: 185 AIVYVSTE--KAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLXXXXXXXXXAIK 242
+VY+ E ++W G I ++ I + + G YR ++ SP+ A +
Sbjct: 202 VLVYMQDEVGRSWAYG--ICTVSMAIAIVIFLCGTKRYRYKKSQGSPVVQIFQVIAAAFR 259
Query: 243 NRKLSLPENPEELYEINEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAA--------P 294
RK+ LP++ LYE N + G RI HT+QF LDKAAIV + E P
Sbjct: 260 KRKMELPQSIVYLYEDNPE---GI--RIEHTDQFHLLDKAAIVAEGDFEQTLDGVAIPNP 314
Query: 295 WRVCTLTQVEEVKILTRMMPILASTILMNTCLAQLQTFSVTQGAYMDPQLGSIKVPTPSI 354
W++ ++T+VEEVK++ R++PI A+TI+ T AQ+ TFSV Q + M +GS K+P S+
Sbjct: 315 WKLSSVTKVEEVKMMVRLLPIWATTIIFWTTYAQMITFSVEQASTMRRNIGSFKIPAGSL 374
Query: 355 PVIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVEVQR 414
V + + I L VY+ +PF +K G P G + LQR+ +GLVLS M A VE +R
Sbjct: 375 TVFFVAAILITLAVYDRAIMPFWKKWKGKP-GFSSLQRIAIGLVLSTAGMAAAALVEQKR 433
Query: 415 RNAFNQMPPKQ--ISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRXXXXXXXXXX 472
+ K IS+F L Q+ + G + F G L+FF ++P GM+
Sbjct: 434 LSVAKSSSQKTLPISVFLLVPQFFLVGAGEAFIYTGQLDFFITQSPKGMKTMSTGLFLTT 493
Query: 473 XXXXXXXXXVFVDIINAVTKRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYLY 532
V I+ VT T + GWL +IN + FYW L ILS +NFV+Y+
Sbjct: 494 LSLGFFVSSFLVSIVKRVTS--TSTDVGWL-ADNINHGRLDYFYWLLVILSGINFVVYII 550
Query: 533 AAAWY 537
A W+
Sbjct: 551 CALWF 555
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| TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 800 (286.7 bits), Expect = 1.2e-79, P = 1.2e-79
Identities = 175/542 (32%), Positives = 288/542 (53%)
Query: 9 KQK-GGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLL 67
K+K G ++AC FI E + + ++V Y ++ ++ A A+N +TN G+ ++
Sbjct: 22 KEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYIT 81
Query: 68 CLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSC-VKGGIAAY 126
L+G FI+D +L R+ T F + V + ++T+ A L P +C +C A
Sbjct: 82 PLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCNADTCHPNSSQTAV 141
Query: 127 FYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAI 186
F+ +L + ALG+GG++ + + GA QFDE D +S+FN+F + + A+I T +
Sbjct: 142 FFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYFSINVGALIAATVL 201
Query: 187 VYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLXXXXXXXXXAIKNRKL 246
V++ W GF + ++ I G FYR Q+PG SPL A + +
Sbjct: 202 VWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAFRKISV 261
Query: 247 SLPENPEELYEINEKE-RVGTEERIPHTNQFRCLDKAAIVPK-DST---EAAPWRVCTLT 301
+PE+ L+E + E + ++ HT+ + DKAA+ + DS E PWR+C++T
Sbjct: 262 KVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFDKAAVESQSDSIKDGEVNPWRLCSVT 321
Query: 302 QVEEVKILTRMMPILASTILMNTCLAQLQTFSVTQGAYMDPQLG-SIKVPTPSIPVIPLL 360
QVEE+K + ++P+ A+ I+ T +Q+ T V QG MD +G + ++P+ S+ + +
Sbjct: 322 QVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQHMGKNFEIPSASLSLFDTV 381
Query: 361 FMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVEVQRRN---A 417
+ PVY+ +P ARK T + G TQLQR+G+GLV+S +M AG +EV R +
Sbjct: 382 SVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSIFAMITAGVLEVVRLDYVKT 441
Query: 418 FNQMPPKQI--SLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRXXXXXXXXXXXXX 475
N KQI S+FW QY + G A++FT +G LEFFY +AP MR
Sbjct: 442 HNAYDQKQIHMSIFWQIPQYLLIGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAL 501
Query: 476 XXXXXXVFVDIINAVTKRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYLYAAA 535
V V ++ +TK+ K GW+ ++N+ + + F++ LA LS LNF++YL+ +
Sbjct: 502 GNYLSTVLVTVVMKITKK--NGKPGWIPD-NLNRGHLDYFFYLLATLSFLNFLVYLWISK 558
Query: 536 WY 537
Y
Sbjct: 559 RY 560
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q93VV5 | PTR16_ARATH | No assigned EC number | 0.4272 | 0.9795 | 0.8900 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00022502001 | SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (590 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 537 | |||
| pfam00854 | 372 | pfam00854, PTR2, POT family | 4e-42 | |
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 4e-15 | |
| COG3104 | 498 | COG3104, PTR2, Dipeptide/tripeptide permease [Amin | 4e-11 |
| >gnl|CDD|216153 pfam00854, PTR2, POT family | Back alignment and domain information |
|---|
Score = 154 bits (391), Expect = 4e-42
Identities = 89/360 (24%), Positives = 145/360 (40%), Gaps = 31/360 (8%)
Query: 124 AAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGV 183
A FY L L ALG+GG++ + A GA QFDE +F++F + ++I
Sbjct: 32 VALFYIGLYLIALGTGGIKPNVSAFGADQFDETQDP---RRDGFFSWFYFSINAGSLIAT 88
Query: 184 TAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGES--PLVRVSQVVVVAI 241
Y+ + GF + ++ + + ++G Y+ + P V ++ ++ A
Sbjct: 89 IITPYLQQNVGYPLGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAG 148
Query: 242 KNRKLSLPENPEELYEI--NEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCT 299
KNRKL LP++ LY +R + HT +
Sbjct: 149 KNRKLQLPKDSHWLYWALEKYNKRSI-SQTKVHTR-VAVIFIPLPKFWALF-------DQ 199
Query: 300 LTQVEEVKILTRMMPILASTILMNTCLAQLQTFSVTQGAYMDPQLGS-IKVPTPSIPVIP 358
V ++ + M+PI A IL + QL T V Q MD + ++P S
Sbjct: 200 QGSVWLLQAILLMLPIWAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFN 259
Query: 359 LLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVEVQRR--- 415
L + ILLP+ + L P R G+T QR G+G+ + V+ +A VE +R
Sbjct: 260 PLAVLILLPILDFLVYPLLR----LKRGLTLPQRFGLGMFILIVANFLAAIVEAKRPRYA 315
Query: 416 NAFNQMPPKQ---ISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLS 472
A P + + W + I G+ L G LEF P+ M +L T + +
Sbjct: 316 AALGLTSPGWTVPLFILWSLPELFISGVG----LAGALEFAPDALPSSMMSLWTLLSAAA 371
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The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 4e-15
Identities = 80/406 (19%), Positives = 156/406 (38%), Gaps = 60/406 (14%)
Query: 38 MVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALV 97
+VLY N + +N A+N +L L+G I+D++L +F T L + V+
Sbjct: 10 LVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSLVYVVGHA 69
Query: 98 MITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKD 157
+ ++ A HP + + G L L ALG+GG++ + A G QF+E+
Sbjct: 70 LASLGAVPSLGHPLH--DALSLVG---------LALIALGTGGIKPCVSAFGGDQFEERQ 118
Query: 158 PKGAKALASYFNYFLLTTTLAAVIG--VTAIVYV-----STEKAWWGGFLISSIVTFIGF 210
+F++F ++ +T I+ + + F + I+ +
Sbjct: 119 ---LSLRFRFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPLAFGVPGILMTLAL 175
Query: 211 IALVIGKPFYRNQQPGESPLVRVSQVVVVAIKNRKLSLPENPEELYEINEKERVGTEERI 270
I +G Y+ + P + + +V + +V A+K R T
Sbjct: 176 IVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKKR-------------------FRTRSED 216
Query: 271 PHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVKILTRMMPILASTILMNTCLAQLQ 330
+ LD AA R+ + K L R++ + + Q
Sbjct: 217 WPRLHW--LDWAA-------PKYLIRM-----IRSTKRLLRVLFLFIPLPMFWALFDQQG 262
Query: 331 TFSVTQGAYMDPQLGSIKVPTPSIPVI-PLLFMSILLPVYELLFVPFARKITGHPSGITQ 389
+ Q MD +G + + + PLL + IL+P+++ + P K + T
Sbjct: 263 SRWTLQATRMDGDVGLFPIQPDQMQAVNPLLVL-ILVPIFDYVVYPALAKC---GTRFTS 318
Query: 390 LQRVGVGLVLSAVSMTIAGFVEVQRRNAFNQMPPKQISLFWLSFQY 435
L+++ VG++L+A++ +A ++ + + P I F
Sbjct: 319 LRKMAVGMLLAALAFAVAALLQNKINPTLPEEPSASII-FLQVLNT 363
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[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
| >gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 4e-11
Identities = 79/505 (15%), Positives = 167/505 (33%), Gaps = 81/505 (16%)
Query: 1 MEDKVATIKQKGGF---RACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTL 57
++ T + F R IF + E + ++LY ++ L
Sbjct: 4 PTEEENTTLEMKFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHA 63
Query: 58 TNLMGS----TFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDC 113
T L + +L ++GG+++D L T ++ L + +++ A S P
Sbjct: 64 TGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVL---AISSVSGPG-- 118
Query: 114 GKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLL 173
Y L L +G+G + + +L + + DP+ F F +
Sbjct: 119 ------------GLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGG----FTLFYM 162
Query: 174 TTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGK-----------PFYRN 222
+ ++I ++ W GF ++++ IG + ++G+ P +
Sbjct: 163 GINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLS 222
Query: 223 QQPGESPLVRVSQVVVVAIKNRKLSLPENPEELYEINEKERVGTEERIPHTNQFR-CLDK 281
L + +++ A+ L+ N F L
Sbjct: 223 FNFLLPVLGGLVVMILAALLTLLLNQ-------------------------NTFSGVLLV 257
Query: 282 AAIVPK--DSTEAAPWRVCTLTQVEEVKILTRMMPILASTILMNTCLAQLQTFSVTQGAY 339
+I+ EA +E + L +P+ ++ Q+ +
Sbjct: 258 ISILIAIIYFAEAFRSPKVF----DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADR 313
Query: 340 M-DPQLGSIKVPTPSIPVIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLV 398
+ Q+ +VP + F+ + P+ L+ R PS + +GL+
Sbjct: 314 NVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRG-NKQPSTPIKF---ALGLI 369
Query: 399 LSAVSMTIAGFVEVQRRNAFNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAP 458
L+ + I + P +S++WL Y + ++F L K AP
Sbjct: 370 LAGLGFLILLLAGIWFGG-----PSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAP 424
Query: 459 AGMRTLSTSFTFLSLSFGNFLSSVF 483
+++ + FL+++ G L
Sbjct: 425 PALKSFIMAMWFLTVAAGQTLGGQV 449
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Length = 498 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 537 | |||
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 100.0 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 100.0 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 100.0 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 100.0 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 100.0 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 100.0 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.94 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.93 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.93 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.93 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.93 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.93 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.92 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 99.92 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.91 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.91 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.91 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.91 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.91 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.91 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.91 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.91 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.91 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.91 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.91 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.9 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.9 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.9 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.9 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.9 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.9 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.9 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.9 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.9 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.9 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.9 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.89 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.89 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.89 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.89 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.89 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.89 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.89 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.89 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.89 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.89 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.89 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.89 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.89 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.88 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.88 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.88 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.88 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.88 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.87 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.87 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.87 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.87 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.87 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.87 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.87 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.86 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.86 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.86 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.86 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.86 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.85 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.85 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.84 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.84 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.84 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.84 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.83 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.83 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.83 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.82 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.82 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.82 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.82 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.82 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.81 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.81 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.81 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.8 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.79 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.77 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.75 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.75 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.73 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.71 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.7 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.7 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.7 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.69 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.69 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.68 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.68 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.67 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.67 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.67 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.66 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.65 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.64 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.64 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.6 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.59 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.59 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.58 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.55 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.54 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.53 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.52 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.45 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.43 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.41 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.41 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.39 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.38 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.38 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.37 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.37 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.36 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.36 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.36 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.35 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.34 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.34 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.33 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.31 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.31 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.3 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.3 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.29 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.28 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.27 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.27 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.27 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.26 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.26 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.26 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.25 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.25 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.24 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.23 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.22 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.21 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.21 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.19 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.19 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.18 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.18 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.17 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.15 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.13 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.12 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.11 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.11 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.1 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.1 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.1 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.09 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.08 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.08 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.07 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.07 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.06 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.06 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.04 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.04 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.02 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.01 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.01 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.0 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.99 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 98.98 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.97 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.97 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.97 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.97 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.96 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.96 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.96 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.96 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.96 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 98.96 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.95 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.95 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.94 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.92 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.91 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.9 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.88 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.84 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.83 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.82 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.81 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.81 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.81 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.77 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.75 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.74 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.74 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.74 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.73 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.71 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.7 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.7 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.66 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.62 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.61 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.6 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 98.59 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.57 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.57 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.49 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.48 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.46 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.42 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.39 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.35 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.33 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.31 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.28 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.28 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.27 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.26 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.26 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.2 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.12 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.12 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.08 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.04 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.03 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.02 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.01 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 97.98 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 97.96 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 97.88 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 97.88 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.83 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 97.81 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 97.69 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 97.69 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 97.54 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.51 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 97.4 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 97.39 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.33 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.29 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 97.09 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.09 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 96.82 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 96.73 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 96.66 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 96.65 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.54 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 96.5 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 96.32 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 96.23 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 96.01 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 95.41 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 95.37 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 95.21 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 94.43 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 94.05 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 93.94 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 93.68 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 92.92 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 92.38 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 91.62 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 91.57 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 90.57 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 89.72 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 88.27 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 86.34 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 85.84 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 84.64 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 82.9 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 80.54 |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-48 Score=407.92 Aligned_cols=518 Identities=40% Similarity=0.702 Sum_probs=460.8
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHH
Q 044175 10 QKGGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFG 89 (537)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~ 89 (537)
.++.|+++..++..+.+|++++|++..++..|+.+++|.+..++.-.++.+.......++++++++|.|+||.+++.++.
T Consensus 32 ~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s 111 (571)
T KOG1237|consen 32 KTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGS 111 (571)
T ss_pred eechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCCC----CCCCccCC--chhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhh
Q 044175 90 TLEVLALVMITVQAYSEKLHPPDC----GKSSCVKG--GIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKA 163 (537)
Q Consensus 90 ~~~~i~~~l~~~~~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 163 (537)
++..+|..++......+.+.++.| ..+.|++. .....++.++-+.++|.|+..|+..++.+||+++..+.++..
T Consensus 112 ~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~ 191 (571)
T KOG1237|consen 112 LISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKG 191 (571)
T ss_pred HHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhC
Confidence 999999999998888888888775 33445443 355678888899999999999999999999999777777777
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHhccccccccCCCCCchhhHHHHHHHHHHh
Q 044175 164 LASYFNYFLLTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQVVVVAIKN 243 (537)
Q Consensus 164 r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 243 (537)
+.+.|+|+|...++|..++..+..++.++.+|.+.|.++.++..+++++++...+.++.++|.+++...+.+++..+.++
T Consensus 192 ~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k 271 (571)
T KOG1237|consen 192 IPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFK 271 (571)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCChhhhhhhhhhhccCCccccCCCCchhHhhhhccCCCCC----CCCCCcccccchhHHHHHHHHhHHHHHHHH
Q 044175 244 RKLSLPENPEELYEINEKERVGTEERIPHTNQFRCLDKAAIVPKDS----TEAAPWRVCTLTQVEEVKILTRMMPILAST 319 (537)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 319 (537)
++...+.+++++... ........+.++++++|++......+ .+..+|+.|+.+++|+.|.++|.++++...
T Consensus 272 ~~~~~~~~~~~~~~~-----~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~ 346 (571)
T KOG1237|consen 272 RKAVVSLDPEELYYD-----CTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTT 346 (571)
T ss_pred HhccCCCcchhcccc-----ccccccccCCcccchhhHhhccCCcccccccccCCccCCCceehhhhhhhhhhhHHHHHH
Confidence 887777664443111 01112223356788999987765432 234679999999999999999999999999
Q ss_pred HHHHHhhhhcchhhheeccccCCCCCc-cccCCCcccccchHhHHHHhhhhcchhccccccccCCCCCCCchHHHHHHHH
Q 044175 320 ILMNTCLAQLQTFSVTQGAYMDPQLGS-IKVPTPSIPVIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLV 398 (537)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~ 398 (537)
+.++.++.|+.+.+..|...+|...++ +.+|++.++.+..+..++..|+.|+...|+.||.++++.+.+.++++.+|++
T Consensus 347 i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~~ 426 (571)
T KOG1237|consen 347 IIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGLV 426 (571)
T ss_pred HHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccch
Confidence 999999999999999999999999987 9999999999999999999999999999999999887777899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcc--CCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchhHHHHHHHHHHHHHH
Q 044175 399 LSAVSMTIAGFVEVQRRNAFNQ--MPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLSFG 476 (537)
Q Consensus 399 l~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g 476 (537)
+..+++...+..+..|.+...+ +..++++++|++|+|+++|++|++..++..||.++++|++||+.+++++.+..++|
T Consensus 427 ~si~sm~~aa~vE~krl~~~~~~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G 506 (571)
T KOG1237|consen 427 LSILSMAVAGIVEAKRLKTAVSLLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVG 506 (571)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998886654 22357999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhccCCCCCCCCcc-CCCCCCchhHHHHHHHHHHHHHHHHHHhhhcccC
Q 044175 477 NFLSSVFVDIINAVTKRITPSKQGWLH-GTDINKNNANLFYWFLAILSVLNFVLYLYAAAWY 537 (537)
Q Consensus 477 ~~~~~~l~~~i~~~~~~~~~~~~~w~~-~~~l~~~~~~~~f~~~~~l~~~~~v~~~~~~~~y 537 (537)
+.++..+..++...+.. +.+|+. + ++|+++.+++||+++.++.++.+.+....+||
T Consensus 507 ~~lss~Lv~~v~~~t~~----~~~w~~~~-~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y 563 (571)
T KOG1237|consen 507 NYLSSVLVSLVQFSTGK----AAEWLGFA-NLNKGRLDYFYWLLAVYSAVNFLYFLICAKRY 563 (571)
T ss_pred HHHHHHHHHHHHHhcCC----CcccCChh-HhhhhHHHHHHHHHHHHHhhhhhheEEEEEee
Confidence 99999999988866521 347999 7 99999999999999999999999999999887
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=346.31 Aligned_cols=460 Identities=16% Similarity=0.283 Sum_probs=347.8
Q ss_pred hcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC----CchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHH
Q 044175 9 KQKGGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMH----FNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFAT 84 (537)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~ 84 (537)
+.-++||.++.++..|++|||+|||+...+..|+..+++ ++++++..+.+.|....++.+++|||+|||++|+||+
T Consensus 15 ~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~t 94 (498)
T COG3104 15 KFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRT 94 (498)
T ss_pred ccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence 444689999999999999999999999999999998887 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhh
Q 044175 85 CLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKAL 164 (537)
Q Consensus 85 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 164 (537)
+..|.++.++|.+.++... ......++++.+++++|.|+++|+..++++|++|+++|| |
T Consensus 95 I~lGail~~iGh~~L~~~~-----------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr----r 153 (498)
T COG3104 95 IVLGAILMAIGHLVLAISS-----------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR----R 153 (498)
T ss_pred HHHHHHHHHHHHHHHhccc-----------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc----c
Confidence 9999999999999998762 125678999999999999999999999999999999987 8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHhccccccccC--CCCCchhh------HHHH
Q 044175 165 ASYFNYFLLTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQ--PGESPLVR------VSQV 236 (537)
Q Consensus 165 ~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------v~~~ 236 (537)
...++.+|++.|+|+.++|.+.+++.+.+||+..|.++++-+.++++.+++.+++..... +++.+... ...+
T Consensus 154 D~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (498)
T COG3104 154 DGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGL 233 (498)
T ss_pred CCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHH
Confidence 899999999999999999999999999999999999999999999998888887765543 22222211 0000
Q ss_pred HHHHHHhccCCCCCChhhhhhhhhhhccCCccccCCCCchhHhhhhccCCCCCCCCCCcccccchhHHHHHHHHhHHHHH
Q 044175 237 VVVAIKNRKLSLPENPEELYEINEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVKILTRMMPIL 316 (537)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 316 (537)
+....... ..... ..+..+.......-.-..-+..+ . .+| .+.+ +++|+++..++++
T Consensus 234 ~~~~~~~~-------~~~~l--~~~~~~~~~~~~~i~~~~~~~~~-~---------~~~---~~~~-~er~r~~~~~~Lf 290 (498)
T COG3104 234 VVMILAAL-------LTLLL--NQNTFSGVLLVISILIAIIYFAE-A---------FRS---PKVF-DERRRLLAAIPLF 290 (498)
T ss_pred HHHHHHHH-------HHHHH--HHHHHHHHHHHHHHHHHHHHHHH-H---------hcc---CccH-HHHHHHHHHHHHH
Confidence 00000000 00000 00000000000000000000000 0 011 1122 6788888999999
Q ss_pred HHHHHHHHhhhhcchhhheeccc-cCCCCCccccCCCcccccchHhHHHHhhhhcchhccccccccCCCCCCCchHHHHH
Q 044175 317 ASTILMNTCLAQLQTFSVTQGAY-MDPQLGSIKVPTPSIPVIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGV 395 (537)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~ 395 (537)
.+.++||.+++|..+.+..+... .+.+..|+.++++++|++|++.+++++|+.+++..++.++. + .++...+..+
T Consensus 291 l~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~-~---~ps~~~KFal 366 (498)
T COG3104 291 LFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN-K---QPSTPIKFAL 366 (498)
T ss_pred HHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC-C---CCCcchHHHH
Confidence 99999999999999876666543 34443458899999999999999999999999998876664 2 2688999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchhHHHHHHHHHHHHH
Q 044175 396 GLVLSAVSMTIAGFVEVQRRNAFNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLSF 475 (537)
Q Consensus 396 g~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~ 475 (537)
|+.+++++++..........+. + ...+.+|+++.|+++++||.+.+|.+.+++++.+|+++++.++++|.+.+..
T Consensus 367 Gl~l~g~~fl~l~~~~~~~~~~--~---~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~ 441 (498)
T COG3104 367 GLILAGLGFLILLLAGIWFGGP--S---GLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAA 441 (498)
T ss_pred HHHHHHHHHHHHHHHHHhhcCC--C---CCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 9999999998877653332110 1 2478999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhccCCCCCCCCccCCCCCCchhHHHHHHHHHHHHHHHHHHhhhc
Q 044175 476 GNFLSSVFVDIINAVTKRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYLYAA 534 (537)
Q Consensus 476 g~~~~~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~~~~~l~~~~~v~~~~~~ 534 (537)
++.++..+.+.... +. + ..+......+|+..+..+++..+....+.
T Consensus 442 ~~~l~g~va~~~~~-~~-------~-----~~~~~~~~~~F~~~g~v~i~~~~~~~~~~ 487 (498)
T COG3104 442 GQTLGGQVAGLTAV-TD-------P-----AYTAFIEGRVFGTIGVVAIVIGILLLLLS 487 (498)
T ss_pred HHHhhceecccccc-cc-------h-----hhhhhhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 99998777663110 00 0 11123345667777777666655544443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=330.36 Aligned_cols=458 Identities=12% Similarity=0.165 Sum_probs=326.1
Q ss_pred hcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHH
Q 044175 9 KQKGGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIF 88 (537)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~ 88 (537)
..++|||.++.++..+++||++||++..++++|+++++|++..+++++.+.+....++.++++|+++||++||||++.++
T Consensus 8 ~~~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g 87 (489)
T PRK10207 8 GLLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLG 87 (489)
T ss_pred chhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHH
Confidence 44679999999999999999999999999999999999999999999999999999999999999999944999999999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHH
Q 044175 89 GTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYF 168 (537)
Q Consensus 89 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 168 (537)
.+++.++++++.++. .....++++|+++++|.|..+|+..++++|++|+++++ |++.+
T Consensus 88 ~~~~~~g~~~~~~~~------------------~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~----~~~~~ 145 (489)
T PRK10207 88 AIVLAIGYFMTGMSL------------------LKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR----LDGAF 145 (489)
T ss_pred HHHHHHHHHHHHHhc------------------cchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchh----hhcch
Confidence 999999999998764 12334668899999999999999999999999977632 67889
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHhcccccccc--CCCCCchhhHHHH------H--H
Q 044175 169 NYFLLTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQ--QPGESPLVRVSQV------V--V 238 (537)
Q Consensus 169 ~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~------~--~ 238 (537)
+++|++.|+|..++|.+++++.++.|||+.|+++.+...+.++.+...++.+++. +|++++.+..... . .
T Consensus 146 ~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~ 225 (489)
T PRK10207 146 TLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMI 225 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999997765555565555555444332 2222222111100 0 0
Q ss_pred HHHHhccCCCCCChhhh-hhhhhhhccCCccccCCCCchhHhhhhccCCCCCCCCCCcccccchhHHHHHHHHhHHHHHH
Q 044175 239 VAIKNRKLSLPENPEEL-YEINEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVKILTRMMPILA 317 (537)
Q Consensus 239 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 317 (537)
....... +.. ..... ...... . ...-++.+.. ..++ .++++.+....++.
T Consensus 226 ~~~~~~~-~~~-~~~~~~~~~~~~--------i---~~~~f~~~~~---------------~~~~-~~r~r~~~~~~l~~ 276 (489)
T PRK10207 226 FVCAWLM-HNV-EVANLVLIVLSI--------V---VTIIFFREAF---------------KLDK-TGRNKMFVAFVLML 276 (489)
T ss_pred HHHHHHH-hhh-hHHHHHHHHHHH--------H---HHHHHHHHHh---------------cCCH-HHHHHHHHHHHHHH
Confidence 0000000 000 00000 000000 0 0000000000 0011 22344445566666
Q ss_pred HHHHHHHhhhhcchhhheecc-ccCCCCCccccCCCcccccchHhHHHHhhhhcchhccccccccCCCCCCCchHHHHHH
Q 044175 318 STILMNTCLAQLQTFSVTQGA-YMDPQLGSIKVPTPSIPVIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVG 396 (537)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~g 396 (537)
....+|..+.|..+....+.. ..+.+..++.++++.++++|++..++..|+.+++.+++.+| +..+++..++.+|
T Consensus 277 ~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r----~~~~~~~~k~~~G 352 (489)
T PRK10207 277 EAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSK----GKDLSMPMKFTLG 352 (489)
T ss_pred HHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhC----CCCCCcHHHHHHH
Confidence 788889999888665444433 45555567778889999999999999999988765554433 2246889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchhHHHHHHHHHHHHHH
Q 044175 397 LVLSAVSMTIAGFVEVQRRNAFNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLSFG 476 (537)
Q Consensus 397 ~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g 476 (537)
+++.+++++.......... ..++ ..+.+|+++.+++.++||.+.+|..++++++.+|++++|.++|++++.+++|
T Consensus 353 ~~l~~~~~~~~~~~~~~~~---~~~~--~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig 427 (489)
T PRK10207 353 MFLCSLGFLTAAAAGMWFA---DAQG--LTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAA 427 (489)
T ss_pred HHHHHHHHHHHHHHHHhhc---CCCC--ccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 9999999876543321111 0111 2567889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhccCCCCCCCCccCCCCCCchhHHHHHHHHHHHHHHHHHHhhhcc
Q 044175 477 NFLSSVFVDIINAVTKRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYLYAAA 535 (537)
Q Consensus 477 ~~~~~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~~~~~l~~~~~v~~~~~~~ 535 (537)
+.++..+......... .+++ ...+.++.++|...++.+++..++++++.+
T Consensus 428 ~~lg~~l~~~~~~~~~----~~~~-----~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~ 477 (489)
T PRK10207 428 FLLGGYVATFTAVPDN----ITDP-----LETLPVYTNVFGKIGLVTLGVAVVMALMVP 477 (489)
T ss_pred HHHHHHHHHHhccccc----cccc-----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888765531110 0000 011234677888888777776666666554
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=319.20 Aligned_cols=451 Identities=14% Similarity=0.173 Sum_probs=324.3
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--cCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHH
Q 044175 10 QKGGFRACGFIFVLSSLENMGFIANAISMVLYFKNE--MHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLI 87 (537)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~ 87 (537)
.+++||.++.+++.+++|+++||++.++++.|++++ +|++..+++.+.+.+.....++++++|+++||++||||++.+
T Consensus 5 ~~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~ 84 (475)
T TIGR00924 5 FFGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVL 84 (475)
T ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHH
Confidence 356899999999999999999999999999999887 999999999999999999999999999999994499999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhH
Q 044175 88 FGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASY 167 (537)
Q Consensus 88 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 167 (537)
+.++.+++.++++++. +...++++|++.|+|.|...|+..++++|++|+++++ +|+++
T Consensus 85 ~~~~~~~g~~~~~~~~-------------------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~---~r~~~ 142 (475)
T TIGR00924 85 GGIVLMLGHFMLAMSI-------------------YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP---RRDGG 142 (475)
T ss_pred HHHHHHHHHHHHHhcc-------------------cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcc---cccce
Confidence 9999999998888763 4567788999999999999999999999999876521 27889
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHhccccccccCCCCCchhh----H-HH------H
Q 044175 168 FNYFLLTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVR----V-SQ------V 236 (537)
Q Consensus 168 ~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----v-~~------~ 236 (537)
++++|.+.|+|.+++|.+++++.++.||++.|.++++..+++.+.++..++.+++.++++++.++ . .+ .
T Consensus 143 ~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (475)
T TIGR00924 143 FTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAA 222 (475)
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHH
Confidence 99999999999999999999999988999999998876666666665555554433222221110 0 00 0
Q ss_pred HHHHHHhccCCCCCChhhhhhhhhhhccCCccccCCCCchhHhhhhccCCCCCCCCCCcccccchhHHHHHHHHhHHHHH
Q 044175 237 VVVAIKNRKLSLPENPEELYEINEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVKILTRMMPIL 316 (537)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 316 (537)
+...................... ... .......+... .+ ..++ +++++..+.+.++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~-~~~---------~~~~~~~~~~~---------~~----~~~~-~~~~~~~~~l~l~ 278 (475)
T TIGR00924 223 LALVFFCAWLMHHVVIANILLMT-VTL---------AVIIFFFRLAF---------KP----RLDA-VARNKMYAYIVLF 278 (475)
T ss_pred HHHHHHHHHHHhccHHHHHHHHH-HHH---------HHHHHHHHHHH---------hc----cCCH-HHHhHHHHHHHHH
Confidence 00000000000000000000000 000 00000000000 00 0011 2233344577788
Q ss_pred HHHHHHHHhhhhcchhh-heeccccCCCCCccccCCCcccccchHhHHHHhhhhcchhccccccccCCCCCCCchHHHHH
Q 044175 317 ASTILMNTCLAQLQTFS-VTQGAYMDPQLGSIKVPTPSIPVIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGV 395 (537)
Q Consensus 317 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~ 395 (537)
....++|..+.|..+.+ .++...++.+.+++.+|++.++++|++.+++.+|+.+++..++.||. .+++...++.+
T Consensus 279 ~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~----~~~~~~~k~~~ 354 (475)
T TIGR00924 279 LEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKG----KDPTTPLKFTL 354 (475)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCC----CCCCcHHHHHH
Confidence 88889999999988754 34444566666677889999999999999999999887544443331 12477778999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchhHHHHHHHHHHHHH
Q 044175 396 GLVLSAVSMTIAGFVEVQRRNAFNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLSF 475 (537)
Q Consensus 396 g~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~ 475 (537)
|+++.++++...++.... ...+ .+.+.+|+++++++.++||.+..|..++++++.+|+++||+++|++.+...+
T Consensus 355 G~~l~~~~~~~~~~~~~~----~~~~--~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~ 428 (475)
T TIGR00924 355 GMLFCGASFLTFAASIWF----ADAG--GLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAM 428 (475)
T ss_pred HHHHHHHHHHHHHHHHhh----cCCC--CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 999999999887765211 1111 1468899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhccCCCCCCCCccCCCCCCchhHHHHHHHHHHHHHHHHHHhhhcc
Q 044175 476 GNFLSSVFVDIINAVTKRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYLYAAA 535 (537)
Q Consensus 476 g~~~~~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~~~~~l~~~~~v~~~~~~~ 535 (537)
|+.+++.+.....+. .++..+|...++.+++..++++++.+
T Consensus 429 g~~l~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 429 GSLLGGYLATFGAVP-------------------QGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HHHHHHHHHHHHhcc-------------------cchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999998887754311 12344566666666655555555443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=309.36 Aligned_cols=417 Identities=15% Similarity=0.215 Sum_probs=307.5
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHH
Q 044175 12 GGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTL 91 (537)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~ 91 (537)
+|||.++.++..+++|++++|++..+++.|+++++|+++.+++.+.+.+....+++++++|+++||++||||++.++.++
T Consensus 6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il 85 (493)
T PRK15462 6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL 85 (493)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999944999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHH
Q 044175 92 EVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYF 171 (537)
Q Consensus 92 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 171 (537)
..++.+++.... .+...+.++..+..+|.|...++.+++++|++|+++++ |.+++++.
T Consensus 86 ~~lg~lll~~~~------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~----R~sgf~i~ 143 (493)
T PRK15462 86 MAIGHVVLGASE------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR----RDGGFSLM 143 (493)
T ss_pred HHHHHHHHHHhh------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc----ccceehHH
Confidence 999987665432 12233555666677888999999999999999977533 88899999
Q ss_pred HHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHhccccccccCC-CCCch--hhHH----HHHHH-H---
Q 044175 172 LLTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQP-GESPL--VRVS----QVVVV-A--- 240 (537)
Q Consensus 172 ~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~v~----~~~~~-~--- 240 (537)
|...|+|+.++|.+++++.+.+||+..|.++++.++++++.++..++.+.+..+ ++++. ++.. ..+.. .
T Consensus 144 Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (493)
T PRK15462 144 YAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVAT 223 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999998999999999877666666666665554433211 11111 1100 00000 0
Q ss_pred --HHhccCCCCCChhhhhhhhhhhccCCccccCCCCchhHhhhhccCCCCCCCCCCcccccchhHHHHHHHHhHHHHHHH
Q 044175 241 --IKNRKLSLPENPEELYEINEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVKILTRMMPILAS 318 (537)
Q Consensus 241 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 318 (537)
......... ........... . . . --.-++.+.+ ...+|+|++...+.+..+
T Consensus 224 ~~~~~~~~~~~-~~~~~~~~~~~--~---~-~---~~~~~~~~~~-----------------~~~~er~r~~~~~~l~~~ 276 (493)
T PRK15462 224 PALITVLFWKE-WSVYALIVATI--I---G-L---GVLAKIYRKA-----------------ENQKQRKELGLIVTLTFF 276 (493)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHH--H---H-H---HHHHHHHHhc-----------------CCHHHHhhHHHHHHHHHH
Confidence 000000000 00000000000 0 0 0 0000000000 012567778888899999
Q ss_pred HHHHHHhhhhcchhhh-eeccccCCCCCccccCCCcccccchHhHHHHhhhhcchhccccccccCCCCCCCchHHHHHHH
Q 044175 319 TILMNTCLAQLQTFSV-TQGAYMDPQLGSIKVPTPSIPVIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGL 397 (537)
Q Consensus 319 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~g~ 397 (537)
.++||..++|.++... +...+.|.++.++.+|+++++++|++.+++++|+...+..++.+| ++.++...|..+|+
T Consensus 277 ~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~----~~~~s~~~Kfa~g~ 352 (493)
T PRK15462 277 SMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAG----NRTVRIWGKFALGL 352 (493)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcC----CCCCCcHHHHHHHH
Confidence 9999999999987543 344667888888999999999999999999999998865444322 11368899999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchhHHHHHHHHHHH-HHH
Q 044175 398 VLSAVSMTIAGFVEVQRRNAFNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSL-SFG 476 (537)
Q Consensus 398 ~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~-~~g 476 (537)
++++++++++....... ..++ ..+.+|++..+++.++||.+.+|.+++++.+.+|++.||..+|++.+.. .+|
T Consensus 353 ~~~g~~f~~l~~~~~~~----~~~~--~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~ 426 (493)
T PRK15462 353 GLMSAGFCILTLSARWS----AMYG--HSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIA 426 (493)
T ss_pred HHHHHHHHHHHHHHhhc----CCCC--CcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 99999998776643221 1112 3678899999999999999999999999999999999999999998854 799
Q ss_pred HHHHHHHHHHh
Q 044175 477 NFLSSVFVDII 487 (537)
Q Consensus 477 ~~~~~~l~~~i 487 (537)
+.++..+....
T Consensus 427 ~~~~g~~~~~~ 437 (493)
T PRK15462 427 NYLAGVIADQT 437 (493)
T ss_pred HHHHHHHHHHh
Confidence 98887776654
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=308.04 Aligned_cols=452 Identities=13% Similarity=0.206 Sum_probs=318.5
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHH
Q 044175 12 GGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTL 91 (537)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~ 91 (537)
+++|.++.+++.+++|++++|++..+++.|+++++|++..+++++.+.+.......++++|+++||++|||+++.++.++
T Consensus 18 ~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~ 97 (500)
T PRK09584 18 KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIV 97 (500)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 57788999999999999999999999999999999999999999998888888888889999999933999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHH
Q 044175 92 EVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYF 171 (537)
Q Consensus 92 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 171 (537)
..++..++.++. +....+.++|+++|+|.|...++..++++|++|+++++ |.++++++
T Consensus 98 ~~ig~~l~~~~~------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~----~~~~~~~~ 155 (500)
T PRK09584 98 LAIGYALVAWSG------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR----LDGAFTMY 155 (500)
T ss_pred HHHHHHHHHHhc------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh----hhhcchHH
Confidence 999988888763 23456778899999999999999999999999876532 56688899
Q ss_pred HHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHhcccccccc--CCCCCchhhH------HHHHHHHHHh
Q 044175 172 LLTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQ--QPGESPLVRV------SQVVVVAIKN 243 (537)
Q Consensus 172 ~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v------~~~~~~~~~~ 243 (537)
|.+.++|+.++|.+++++.++.||++.|.++++...++++.++..++..++. +|++++.+.. ..+.......
T Consensus 156 ~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (500)
T PRK09584 156 YMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIA 235 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999989999999998876666555544443333322 2222222111 0111111110
Q ss_pred c-cCCCCCChhhhhhhhhhhccCCccccCCCCchhHhhhhccCCCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHH
Q 044175 244 R-KLSLPENPEELYEINEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVKILTRMMPILASTILM 322 (537)
Q Consensus 244 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 322 (537)
. ....++.......... .....+..... +..++ +++++....+.++...++|
T Consensus 236 ~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~------------~~~~~-~~~~~~~~~~~~~~~~i~f 288 (500)
T PRK09584 236 TWLLHNQEIARMALGVVA--------------LGIVVIFGKEA------------FAMKG-AARRKMIVAFILMLEAIIF 288 (500)
T ss_pred HHHHhcchHHHHHHHHHH--------------HHHHHHHHHHH------------hhcCH-HHHHHHHHHHHHHHHHHHH
Confidence 0 0000100000000000 00000000000 00112 3444555566677788889
Q ss_pred HHhhhhcchhhheecc-ccCCCCCccccCCCcccccchHhHHHHhhhhcchhccccccccCCCCCCCchHHHHHHHHHHH
Q 044175 323 NTCLAQLQTFSVTQGA-YMDPQLGSIKVPTPSIPVIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSA 401 (537)
Q Consensus 323 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~ 401 (537)
|..+.|.++.+..+.. ..+....++.++++.++++|++.+++.+|+.+++..++.+| .+..+++.+|+++++
T Consensus 289 ~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r-------~~~~~~~~~G~~l~~ 361 (500)
T PRK09584 289 FVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDR-------LPMPHKFAIGMVLCS 361 (500)
T ss_pred HHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcC-------CCcHHHHHHHHHHHH
Confidence 9999999887655432 34545556778899999999999999999988754433333 367899999999999
Q ss_pred HHHHHHHHHHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchhHHHHHHHHHHHHHHHHHHH
Q 044175 402 VSMTIAGFVEVQRRNAFNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLSFGNFLSS 481 (537)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~~~~ 481 (537)
++++........ ..++ ...+.+|+++++++.++||++..|.+.+++.+.+|+++||.++|++.+...+|+.++.
T Consensus 362 l~f~~l~~~~~~----~~~~--~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g 435 (500)
T PRK09584 362 GAFLVLPLGAKF----ANDA--GIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAG 435 (500)
T ss_pred HHHHHHHHHHHh----cCCC--CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887664322 1111 1466789999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHhhhhhccCCCCCCCCccCCCCCCchhHHHHHHHHHHHHHHHHHHhhhc
Q 044175 482 VFVDIINAVTKRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYLYAA 534 (537)
Q Consensus 482 ~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~~~~~l~~~~~v~~~~~~ 534 (537)
.+...+..... ..++ .....++..+|...+..+++..++.+...
T Consensus 436 ~~~~~~~~~~~----~~~~-----~~~~~~~~~~f~~~~~~~~~~a~~~~~~~ 479 (500)
T PRK09584 436 YVANLMAVPDN----VTDP-----LMSLEVYGRVFLQIGIATAVIAVLMLLTA 479 (500)
T ss_pred HHHHHhccccc----cccc-----hhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87754331000 0000 11123467788887877665555544433
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-30 Score=277.66 Aligned_cols=438 Identities=21% Similarity=0.382 Sum_probs=348.1
Q ss_pred HHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 044175 29 MGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKL 108 (537)
Q Consensus 29 ~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~ 108 (537)
++||++...+.+|+.+.+|++.+++..+...+....++.++++|+++|+++||+|++.++.++..+|..++++.+..+..
T Consensus 1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~ 80 (654)
T TIGR00926 1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG 80 (654)
T ss_pred CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999988875421111
Q ss_pred CCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 044175 109 HPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVY 188 (537)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~ 188 (537)
. .......+++..+.++|.|+++|+..++.+|++++++ +.+|.++++++|+++|+|+.+++++.++
T Consensus 81 ~-----------~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~---~~~~~s~F~~fY~~iNiGSlis~~i~~~ 146 (654)
T TIGR00926 81 H-----------PLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQ---LSLRSRFFSFFYFAINAGSLISTIITPI 146 (654)
T ss_pred c-----------chHHHHHHHHHHHHHhhccccccCchhhhHhhcCccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 1133457788899999999999999999999998654 2348899999999999999999999999
Q ss_pred hccc-------ccchHHHHHHHHHHHHHHHHHHhccccccccCCCCCchhhHHHHHHHHHHhccCCCCCChhhhhhhhhh
Q 044175 189 VSTE-------KAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQVVVVAIKNRKLSLPENPEELYEINEK 261 (537)
Q Consensus 189 l~~~-------~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (537)
+.+. .+|+.+|.++++.++++++++...++++++.+|++++..++.+++..+.+++....++.
T Consensus 147 l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~~---------- 216 (654)
T TIGR00926 147 LRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSEH---------- 216 (654)
T ss_pred HHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCcc----------
Confidence 8743 36999999999999999988888888887777777777777777666655432111100
Q ss_pred hccCCccccCCCCchhHhhhhccCCCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHhhhhcchhhheeccccC
Q 044175 262 ERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVKILTRMMPILASTILMNTCLAQLQTFSVTQGAYMD 341 (537)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (537)
....|+|.+..+. ..++++++|++++.+.++....++|..+.|..+....|...++
T Consensus 217 ------------~~~~~ld~a~~~~------------~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~ 272 (654)
T TIGR00926 217 ------------WPLHWLDYAKDKH------------DIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMD 272 (654)
T ss_pred ------------cchhHHHHhcccc------------ccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhc
Confidence 0123444433221 1235678899999999999999999999999998888888777
Q ss_pred CCCCccccCCCcccccchHhHHHHhhhhcchhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHh------
Q 044175 342 PQLGSIKVPTPSIPVIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVEVQRR------ 415 (537)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~------ 415 (537)
.+++++.++++.++.++++.++++.|+.++.++|..+|++. ..+++.++.+|++++++++++.+..+..+.
T Consensus 273 ~~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~---~ls~l~k~~iG~~la~la~~va~~ve~~~~~~~~~~ 349 (654)
T TIGR00926 273 GDVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGT---RFTSLRKMAVGGLLAALSFFVAALVQLKVNPTLPEE 349 (654)
T ss_pred CccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 77777888999999999999999999999888887766532 258899999999999999998887664320
Q ss_pred --------------------------------------h-------------h--------------------------h
Q 044175 416 --------------------------------------N-------------A--------------------------F 418 (537)
Q Consensus 416 --------------------------------------~-------------~--------------------------~ 418 (537)
. . .
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (654)
T TIGR00926 350 PSANEIFLQVLNTDCTICDFSVLSKRVLPHDVYLHLDKKNTSGDQGLFTTKSSAKGWTLTYDLSYDGACGLTGNCPKTTD 429 (654)
T ss_pred CCCcceEEEEecCCCCcceEEEEecCCcccccccccCccccccccccccccccccccceEEEEeccccccccCCCCcccc
Confidence 0 0 0
Q ss_pred ----c-------------------------------------------c----------------------------C--
Q 044175 419 ----N-------------------------------------------Q----------------------------M-- 421 (537)
Q Consensus 419 ----~-------------------------------------------~----------------------------~-- 421 (537)
+ + +
T Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (654)
T TIGR00926 430 AHELEPKISYVLLLSQGGYQLTANTDKPTDAKTEKGMGSVRLVNTLNGEFGMISLCTSDSDSVTPCNPRDPYDFYFRGTK 509 (654)
T ss_pred ceeecCCceEEEEEecCCcceeeeeecCccCCCCCCCceEEEEecCCCcceeeEEecccCcccccCCcccccccccccce
Confidence 0 0 0
Q ss_pred ------------------------C-C------------------------ccchHHHHHHHHHHHHHHHHHHhhhhHHH
Q 044175 422 ------------------------P-P------------------------KQISLFWLSFQYCIFGIADMFTLVGLLEF 452 (537)
Q Consensus 422 ------------------------g-~------------------------~~~~~~~l~~~~~l~g~g~~~~~~~~~~~ 452 (537)
| . ++++.+|+++++.+.++||.+..++..++
T Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wq~pq~~~~~~~e~~~~~~~~e~ 589 (654)
T TIGR00926 510 YPANTCDRIDNAKSSTFLSNQLDMGIYYLIVITENSKIDELQAQIVELVSVNTVSILWQIPQYVILTAGEVLFSVTGLEF 589 (654)
T ss_pred eeeeecccccccccccccccccccceEEEEEEcCCCCCCcceeEEEEecCCCceeHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 0 12468999999999999999999999999
Q ss_pred hhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCccCCCCCCchhHHHHHHHHHHHHHHHHHHhh
Q 044175 453 FYKEAPAGMRTLSTSFTFLSLSFGNFLSSVFVDIINAVTKRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYLY 532 (537)
Q Consensus 453 ~~~~~P~~~rg~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~~~~~l~~~~~v~~~~ 532 (537)
.++++|+++|+..++++....++|+.+...+...=. . .....-|..++++.++..+++.+
T Consensus 590 ~~~~~p~~mks~~~a~~~~~~~~g~~~~~~~~~~~~-------------------~-~~~~~~~~~~~~~~~~~~~~f~~ 649 (654)
T TIGR00926 590 SYSQAPPNMKSVLQALWLLTVAIGNLIVVVIAEFEN-------------------F-SVQAAEFFLFASLMLVVMAIFSI 649 (654)
T ss_pred hHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------------------C-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999877665411 0 11233467778888888888888
Q ss_pred hcccC
Q 044175 533 AAAWY 537 (537)
Q Consensus 533 ~~~~y 537 (537)
+++.|
T Consensus 650 ~a~~Y 654 (654)
T TIGR00926 650 LAYFY 654 (654)
T ss_pred HHhcC
Confidence 88877
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-23 Score=215.78 Aligned_cols=384 Identities=10% Similarity=-0.003 Sum_probs=245.8
Q ss_pred chhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHH
Q 044175 7 TIKQKGGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCL 86 (537)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~ 86 (537)
++.++...+.++.+.+..++..++.....+.++.|+++++|+|..+.+++.+.+.+...+++++.|+++||+ ||||++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~ 85 (392)
T PRK12382 7 TETRSSANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSAL 85 (392)
T ss_pred CcCCCcccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHH
Confidence 344444556777777888888888777888889899999999999999999999999999999999999995 9999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhh
Q 044175 87 IFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALAS 166 (537)
Q Consensus 87 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 166 (537)
.+.+...++.+........+... ..+...++++|+++|++.+...+...+++.|.+|+++ |++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~ 148 (392)
T PRK12382 86 QGMLACGLAGLAYLLAAILPVSA-----------PFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGK 148 (392)
T ss_pred HHHHHHHHHHHHHHhhhccccch-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cch
Confidence 99888777655433221100000 1266788999999999999988888899999998877 899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHhccccccccCCCCCchhhHHHHHHHHHHhccC
Q 044175 167 YFNYFLLTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQVVVVAIKNRKL 246 (537)
Q Consensus 167 ~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 246 (537)
++++...+.++|..++|.+++++.+.+||+..+.+..+..++.. ...+ +.++.+++++.
T Consensus 149 a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~----------------- 207 (392)
T PRK12382 149 VMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAW---AFNG-TVRKVPAHAGE----------------- 207 (392)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH---HHHH-hccCCCCCccc-----------------
Confidence 99998888899999999999999888899987665444322221 1111 11111000000
Q ss_pred CCCCChhhhhhhhhhhccCCccccCCCCchhHhhhhccCCCCCCCCCCcccccchhHHHHHHHHh-HHHHHHHHHHHHHh
Q 044175 247 SLPENPEELYEINEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVKILTR-MMPILASTILMNTC 325 (537)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~ 325 (537)
+ + +.. +..|...+ ..........+...
T Consensus 208 ----------------------~----~--~~~------------------------~~~~~~~~~~~~~~l~~~~~~~~ 235 (392)
T PRK12382 208 ----------------------R----P--SLW------------------------SVVGLIWKPGLGLALQGVGFAVI 235 (392)
T ss_pred ----------------------C----c--hHH------------------------HHHHHHHHhHHHHHHHHHHHhHH
Confidence 0 0 000 00011100 00111111111111
Q ss_pred hhhcchhhheeccccCCCCCccccCCCcccccchHhHHHHhhhhcchhccccccccCCCCCCCchHHHHHHHHHHHHHHH
Q 044175 326 LAQLQTFSVTQGAYMDPQLGSIKVPTPSIPVIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMT 405 (537)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~ 405 (537)
.... +.+..+ .+.+ ..........+..++..++..++.+++.+ .+.+..+..+.+++..
T Consensus 236 ~~~~-~~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~~g~l~~r~g~-----------~~~~~~~~~~~~~~~~ 294 (392)
T PRK12382 236 GTFV-SLYFAS-KGWA--------MAGFTLTAFGGAFVLMRVLFGWMPDRFGG-----------VKVAIVSLLVETVGLL 294 (392)
T ss_pred HHHH-HHHHHh-cCCc--------hhHHHHHHHHHHHHHHHHHHHHHHHhcCC-----------CeehHHHHHHHHHHHH
Confidence 1111 111111 1110 01111122333344444555554433322 2334556666666655
Q ss_pred HHHHHHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 044175 406 IAGFVEVQRRNAFNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLSFGNFLSSVFVD 485 (537)
Q Consensus 406 ~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~~~~~l~~ 485 (537)
..... .+.+...+..++.+++.+...+.......+.+|++.||++.|+++....+|+.+++.+.+
T Consensus 295 ~~~~~---------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g 359 (392)
T PRK12382 295 LLWLA---------------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAG 359 (392)
T ss_pred HHHHc---------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44432 123344556777888888888888888889999999999999999999999999999888
Q ss_pred HhhhhhccCCCCCCCCccCCCCCCchhHHHHHHHHHHHHHHHHHHhhhccc
Q 044175 486 IINAVTKRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYLYAAAW 536 (537)
Q Consensus 486 ~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~~~~~l~~~~~v~~~~~~~~ 536 (537)
.+.+. .++...|.+.+++.+++.++.+...|+
T Consensus 360 ~l~~~-------------------~g~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (392)
T PRK12382 360 MLATS-------------------FGYPSVFLAGAISAVLGIIVTILSFRR 391 (392)
T ss_pred HHHHH-------------------hCchHHHHHHHHHHHHHHHHHHhhccC
Confidence 76532 234556788888888877776655553
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-23 Score=216.00 Aligned_cols=172 Identities=13% Similarity=0.125 Sum_probs=153.6
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHH
Q 044175 11 KGGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGT 90 (537)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~ 90 (537)
++.+| ++++..+++.+++++.+.+.++.|+++++|++..+.+.+.+...+...+..+++|+++||+ |||+++..+.+
T Consensus 8 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~ 84 (400)
T PRK11646 8 RNLGK--YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGML 84 (400)
T ss_pred ccccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHH
Confidence 44555 7788999999999999999999999999999999999999999999999999999999995 99999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHH
Q 044175 91 LEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNY 170 (537)
Q Consensus 91 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 170 (537)
+..++.+++.... +.+.+++.|+++|++.+...|...+++.|.+|+++ |++++++
T Consensus 85 ~~~~~~~~~~~~~-------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~ 139 (400)
T PRK11646 85 MRAAGFATMAIAH-------------------EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSL 139 (400)
T ss_pred HHHHHHHHHHHhc-------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHH
Confidence 9999998887653 67788899999999999888999999999998776 8999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHH
Q 044175 171 FLLTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFI 211 (537)
Q Consensus 171 ~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~ 211 (537)
.+...++|..++|.+++++. .++|++.|++.+...++..+
T Consensus 140 ~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i 179 (400)
T PRK11646 140 LMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAA 179 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998 68999999887766554433
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-23 Score=214.24 Aligned_cols=374 Identities=13% Similarity=0.021 Sum_probs=238.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHH
Q 044175 13 GFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLE 92 (537)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~ 92 (537)
+|..++.+.+..++.....+...+. .+.+.+++|.++.+.+++.+.+.++..++.++.|+++||+ ||||++..+.++.
T Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~-~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~ 84 (390)
T PRK03545 7 AWLRVVTLALAAFIFNTTEFVPVGL-LSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVLF 84 (390)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHcc-hHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHH
Confidence 3445666666666654444433233 3456789999999999999999999999999999999995 9999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHH
Q 044175 93 VLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFL 172 (537)
Q Consensus 93 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 172 (537)
.++.+.+..+. +.+.++++|+++|++.+...+...+++.|++|+++ |++++++..
T Consensus 85 ~~~~~~~~~~~-------------------~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~g~~~ 139 (390)
T PRK03545 85 IASHVLSALAW-------------------NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQALSLLA 139 (390)
T ss_pred HHHHHHHHHhc-------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhhHHHHHH
Confidence 99998888774 77889999999999999988999999999999877 899999999
Q ss_pred HHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHhccccccccCCCCCchhhHHHHHHHHHHhccCCCCCCh
Q 044175 173 LTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQVVVVAIKNRKLSLPENP 252 (537)
Q Consensus 173 ~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 252 (537)
...++|..++|.+++.+.+..|||+.|++.++..++..+..+...|+. +++++.. .
T Consensus 140 ~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~----~~~~~~~--------------------~ 195 (390)
T PRK03545 140 TGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLL----PSEHSGS--------------------L 195 (390)
T ss_pred HHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCC----CCCCcch--------------------H
Confidence 999999999999999998888999999987776555444333322211 1100000 0
Q ss_pred hhhhhhhhhhccCCccccCCCCchhHhhhhccCCCCCCCCCCcccccchhHHHHHHHHhHHHH-HHHHHHHHHhhhhcch
Q 044175 253 EELYEINEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVKILTRMMPI-LASTILMNTCLAQLQT 331 (537)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~ 331 (537)
++ ..+ .-..+........ .......+........
T Consensus 196 ---------------------~~--~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (390)
T PRK03545 196 ---------------------KS--LPL----------------------LFRRPALVSLYLLTVVVVTAHFTAYSYIEP 230 (390)
T ss_pred ---------------------HH--HHH----------------------HHhCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 000 0000111111111 1111111111111111
Q ss_pred hhheeccccCCCCCccccCCCcccccchHhHHHHhhhhcchhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 044175 332 FSVTQGAYMDPQLGSIKVPTPSIPVIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVE 411 (537)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~ 411 (537)
+.....+.+.. ..+.......+..++...+..++. +|+ + .+.+..+..+..++.......
T Consensus 231 -~l~~~~g~s~~------~~~~~~~~~~~~~~~g~~~~g~l~----dr~-------~-~~~~~~~~~~~~~~~~~l~~~- 290 (390)
T PRK03545 231 -FVQQVAGLSEN------FATLLLLLFGGAGIIGSVLFSRLG----NRH-------P-SGFLLIAIALLLVCLLLLLPA- 290 (390)
T ss_pred -HHHHhcCCCcc------HHHHHHHHHHHHHHHHHHHHHHHh----hcc-------c-hhHHHHHHHHHHHHHHHHHHH-
Confidence 11111111111 112222223334444444444433 332 1 123444544444444333221
Q ss_pred HHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 044175 412 VQRRNAFNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLSFGNFLSSVFVDIINAVT 491 (537)
Q Consensus 412 ~~~~~~~~~~g~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~~~~~l~~~i~~~~ 491 (537)
..+.+.++...++.|++.+...+.......+..| +.|+.++|+.+....+|..+|+.+.+.+.+.
T Consensus 291 -------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~- 355 (390)
T PRK03545 291 -------------ANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLH- 355 (390)
T ss_pred -------------hchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 1233445556677788877777777788888877 5789999999999999999999999876632
Q ss_pred ccCCCCCCCCccCCCCCCchhHHHHHHHHHHHHHHHHHHhhhcc
Q 044175 492 KRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYLYAAA 535 (537)
Q Consensus 492 ~~~~~~~~~w~~~~~l~~~~~~~~f~~~~~l~~~~~v~~~~~~~ 535 (537)
.++...|+..+.+.+++.++.+...|
T Consensus 356 ------------------~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 356 ------------------LGLSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred ------------------cChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 23445677878888888777766655
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.2e-23 Score=210.96 Aligned_cols=378 Identities=11% Similarity=0.022 Sum_probs=246.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHH
Q 044175 13 GFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLE 92 (537)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~ 92 (537)
.+|.+..+.+..+...++.....+.++.|+++++|.++.+.+++.+.+.++..++.++.|+++||+ ||||++..+.+++
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~ 91 (399)
T PRK05122 13 LTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCGC 91 (399)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHHH
Confidence 445677788888999999888888999999999999999999999999999999999999999995 9999999999998
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHH
Q 044175 93 VLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFL 172 (537)
Q Consensus 93 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 172 (537)
.++.+.+..+....+.. ..+...+++.|+++|++.+...+...+++.|..|+++ |++++++..
T Consensus 92 ~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~ 154 (399)
T PRK05122 92 ALSGLLYLLAGLLAAWP-----------VLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGRVISWNG 154 (399)
T ss_pred HHHHHHHHHhhhhhccc-----------hhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hccchhhhh
Confidence 88777665542111100 0145678999999999999999999999999998877 889999888
Q ss_pred HHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHhccccccccCCCCCchhhHHHHHHHHHHhccCCCCCCh
Q 044175 173 LTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQVVVVAIKNRKLSLPENP 252 (537)
Q Consensus 173 ~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 252 (537)
.+.++|..++|.+++++.+..||+..+++..+..++..+.. ++ .+++++++++
T Consensus 155 ~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~----------------------- 207 (399)
T PRK05122 155 IATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLA---RP-RPAVPPVKGE----------------------- 207 (399)
T ss_pred hhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH---hc-CCCCCCCCcc-----------------------
Confidence 88899999999999999888999988876555433222211 11 1110000000
Q ss_pred hhhhhhhhhhccCCccccCCCCchhHhhhhccCCCCCCCCCCcccccchhHHHHHHHHh-HHHHHHHHHHHHHhhhhcch
Q 044175 253 EELYEINEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVKILTR-MMPILASTILMNTCLAQLQT 331 (537)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~ 331 (537)
+.++. +..|+... ..........+....... .
T Consensus 208 ----------------------~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 240 (399)
T PRK05122 208 ----------------------RLPFR------------------------RVLGRVWPYGMGLALASIGFGTIATFI-T 240 (399)
T ss_pred ----------------------chhHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 00000 00111100 001111111111111111 1
Q ss_pred hhheeccccCCCCCccccCCCcccccchHhHHHHhhhhcchhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 044175 332 FSVTQGAYMDPQLGSIKVPTPSIPVIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVE 411 (537)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~ 411 (537)
.+..+ .+.+ ..+.......+..++..+...++. +|. ++.+.+..+..+.+++.......
T Consensus 241 ~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~~g~l~----~r~-------~~~~~~~~~~~~~~~~~~~~~~~- 299 (399)
T PRK05122 241 LYYAA-RGWD--------GAALALTLFGVAFVGARLLFGNLI----NRL-------GGLRVAIVSLLVEILGLLLLWLA- 299 (399)
T ss_pred HHHHH-cccc--------cchHHHHHHHHHHHHHHHHHHHHH----HHh-------ccHHHHHHHHHHHHHHHHHHHHh-
Confidence 11111 1110 011111222333334444444433 232 23344556666666666555442
Q ss_pred HHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 044175 412 VQRRNAFNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLSFGNFLSSVFVDIINAVT 491 (537)
Q Consensus 412 ~~~~~~~~~~g~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~~~~~l~~~i~~~~ 491 (537)
.+.+..++..++.|++.+...+.......+..|++.||++.|+++....+|..+++.+.+.+.+.
T Consensus 300 --------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~- 364 (399)
T PRK05122 300 --------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW- 364 (399)
T ss_pred --------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 13344555678888888888888778888999999999999999999999999888887765421
Q ss_pred ccCCCCCCCCccCCCCCCchhHHHHHHHHHHHHHHHHHHhhhccc
Q 044175 492 KRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYLYAAAW 536 (537)
Q Consensus 492 ~~~~~~~~~w~~~~~l~~~~~~~~f~~~~~l~~~~~v~~~~~~~~ 536 (537)
.+++..|++.+++++++.+..+.+.++
T Consensus 365 ------------------~g~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 365 ------------------FGYPSIFLAAALAALLGLALTWLLYRR 391 (399)
T ss_pred ------------------cCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 235566777777777777666655444
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-23 Score=215.87 Aligned_cols=175 Identities=13% Similarity=0.098 Sum_probs=153.3
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHH
Q 044175 12 GGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTL 91 (537)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~ 91 (537)
+.+|+++.+.+..++..++++.+.++++.|+++++|++..+.+++.+.+.+...++.++.|+++||+ |||+++.++.++
T Consensus 4 ~~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~ 82 (395)
T PRK10054 4 SLRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITA 82 (395)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHH
Confidence 4678889999999999999999999999999999999999999999999999999999999999995 999999999998
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHH
Q 044175 92 EVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYF 171 (537)
Q Consensus 92 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 171 (537)
..++.+++.+.+ +...+++.|.+.+.+.+...+...+..+|.+|+++ |++.+++.
T Consensus 83 ~~~~~~~~~~~~-------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~ 137 (395)
T PRK10054 83 FASGFIAIPLVN-------------------NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------KTKIFSLN 137 (395)
T ss_pred HHHHHHHHHHHh-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------HHHHHHHH
Confidence 888888777764 56677778888888878888888999999998766 89999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHH
Q 044175 172 LLTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIAL 213 (537)
Q Consensus 172 ~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~ 213 (537)
+...++|.+++|.+++++.. .+|+..|.+.++..++..+..
T Consensus 138 ~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~ 178 (395)
T PRK10054 138 YTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFI 178 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHH
Confidence 99999999999999998875 689999998777666554433
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7e-23 Score=211.95 Aligned_cols=174 Identities=14% Similarity=0.144 Sum_probs=145.8
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHH
Q 044175 11 KGGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGT 90 (537)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~ 90 (537)
|.+|..+.......+++....+......+ .+.+++|+++.+.+++.+.+.++..++.++.|+++||+ ||||++..+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~ 88 (406)
T PRK11551 11 SRLALTIGLCFLVALLEGLDLQSAGVAAP-RMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVA 88 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHH
Confidence 34555666666677777776665555444 55678999999999999999999999999999999995 99999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHH
Q 044175 91 LEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNY 170 (537)
Q Consensus 91 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 170 (537)
+..++.+++.++. +...+++.|+++|++.+...+...+++.|.+|+++ |++++++
T Consensus 89 ~~~~~~~~~~~~~-------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~ 143 (406)
T PRK11551 89 LFGLFSLATAQAW-------------------DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------RGTAVSL 143 (406)
T ss_pred HHHHHHHHHHHhc-------------------cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------HHHHHHH
Confidence 8888887777663 67788999999999999999999999999998777 8999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHH
Q 044175 171 FLLTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFI 211 (537)
Q Consensus 171 ~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~ 211 (537)
.+...++|..+++.+++.+.+..+|+..|++.++..++..+
T Consensus 144 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (406)
T PRK11551 144 MYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVP 184 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888888999999887655444433
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.1e-23 Score=218.25 Aligned_cols=398 Identities=12% Similarity=0.038 Sum_probs=237.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHH
Q 044175 14 FRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEV 93 (537)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~ 93 (537)
|..+..+++..++..+..-.+.+.+|. +.+++|.+..+.+|+.+.+.++...+.++.|+++||+ |||+++.++.+++.
T Consensus 5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~-i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~~ 82 (495)
T PRK14995 5 WLTLVIIVLVYIPVAIDATVLHVAAPT-LSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLFG 82 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHH
Confidence 445566666666666665555555554 4678999999999999999999999999999999995 99999999999999
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCC-CCChhhhhhhhhHHHHHH
Q 044175 94 LALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFD-EKDPKGAKALASYFNYFL 172 (537)
Q Consensus 94 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~-~~~~~~~~~r~~~~~~~~ 172 (537)
+++++++.+. +.+.++++|+++|+|.+...|.....+.+.++ +++ |+++++++.
T Consensus 83 ~~~~~~~~a~-------------------~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~------r~~~~g~~~ 137 (495)
T PRK14995 83 LASLAAAFSP-------------------TASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQ------RNMALGVWA 137 (495)
T ss_pred HHHHHHHHcC-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH------HHHHHHHHH
Confidence 9999998874 78899999999999999988888887877764 344 899999999
Q ss_pred HHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHhccccccccCCCCCchhhHHH------HHHHHHHhccC
Q 044175 173 LTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQ------VVVVAIKNRKL 246 (537)
Q Consensus 173 ~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~------~~~~~~~~~~~ 246 (537)
...++|..++|.+++++.++.|||+.|++...+.++.+++.....++.+++++++.+...... .+....++..
T Consensus 138 ~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~- 216 (495)
T PRK14995 138 AVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTAL- 216 (495)
T ss_pred HHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhcc-
Confidence 999999999999999999999999999998776665554444433332211111111111000 0011111100
Q ss_pred CCCCChh-hhhhh--hhhhccCCccccCCCCchhHhhhhccCCCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHH
Q 044175 247 SLPENPE-ELYEI--NEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVKILTRMMPILASTILMN 323 (537)
Q Consensus 247 ~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 323 (537)
+...+.. ..... ... ....+..... +. ...-.+++.+. .+.+........+.....
T Consensus 217 ~~~~~~~~~~~~~~~~~~------------~l~~f~~~e~-~~--~~p~~~~~lf~------~~~~~~~~~~~~~~~~~~ 275 (495)
T PRK14995 217 KGFLSLWVTSLTLLTGAL------------LLGLFIRTQL-AA--SRPMIDMRLFT------HRIILSGVVMAMTAMITL 275 (495)
T ss_pred ccCCchHHHHHHHHHHHH------------HHHHHHHHHh-cC--CCCCcCHHHhC------CcccHHHHHHHHHHHHHH
Confidence 0000000 00000 000 0000000000 00 00000111110 011111111111111001
Q ss_pred HhhhhcchhhheeccccCCCCCccccCCCcccccchHhHHHHhhhhcchhccccccccCCCCCCCchHHHHHHHHHHHHH
Q 044175 324 TCLAQLQTFSVTQGAYMDPQLGSIKVPTPSIPVIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVS 403 (537)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~ 403 (537)
.....+.+.+.+...+.+. ...+.......+...+..++..++.+ |. ++.+.+..|.++.+++
T Consensus 276 ~~~~~~~~~~lq~v~g~s~------~~ag~~~~~~~~~~~~~~~~~g~l~~----r~-------g~~~~~~~g~~~~~~~ 338 (495)
T PRK14995 276 VGFELLMAQELQFVHGLSP------LEAGMFMLPVMVASGFSGPIAGILVS----RL-------GLRLVATGGMALSALS 338 (495)
T ss_pred HHHHHHHHHHHHHHcCCCH------HHHHHHHHHHHHHHHHHHHHHHHHHH----Hc-------CchHHHHHHHHHHHHH
Confidence 1111111111111111111 11122222334445555566665443 32 2223456677777776
Q ss_pred HHHHHHHHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchhHHHHHHHHHHHHHHHHHHHHH
Q 044175 404 MTIAGFVEVQRRNAFNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLSFGNFLSSVF 483 (537)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~~~~~l 483 (537)
......... ..+.+......++.|+|.+...+.....+.+..|++.++.+.++.++..++|..+|+.+
T Consensus 339 ~~~l~~~~~------------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai 406 (495)
T PRK14995 339 FYGLAMTDF------------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAI 406 (495)
T ss_pred HHHHHHhcC------------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 655443210 12333445567888999999999899999999999999999999999999999999998
Q ss_pred HHHhhh
Q 044175 484 VDIINA 489 (537)
Q Consensus 484 ~~~i~~ 489 (537)
.+.+.+
T Consensus 407 ~g~i~~ 412 (495)
T PRK14995 407 FGLLLS 412 (495)
T ss_pred HHHHHH
Confidence 887653
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-24 Score=221.43 Aligned_cols=365 Identities=27% Similarity=0.435 Sum_probs=236.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhh
Q 044175 82 FATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGA 161 (537)
Q Consensus 82 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~ 161 (537)
.|++.++.+++.+|.+++.++...+...+ ..+...++++..++++|.|+.+|++.++++||++++++
T Consensus 1 yktI~~g~~~~~~G~~ll~l~~~~~~~~~----------~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~--- 67 (372)
T PF00854_consen 1 YKTILLGSIVYLLGHVLLTLSAIPPSLPS----------GIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDD--- 67 (372)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHTSSSC----------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTT---
T ss_pred CHhhhHHHHHHHHHHHHhHHHHhcchhhh----------hHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccch---
Confidence 37899999999999999888765333211 23567899999999999999999999999999997742
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHhcccccccc-CCCCCchhh-HHHHHHH
Q 044175 162 KALASYFNYFLLTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQ-QPGESPLVR-VSQVVVV 239 (537)
Q Consensus 162 ~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-v~~~~~~ 239 (537)
.+|.+.++++|++.|+|+.+++.+.+++.+++||.+.|.++.+.++++++.++..++++++. +|++.+..+ ...+...
T Consensus 68 ~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 147 (372)
T PF00854_consen 68 SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKLVLVA 147 (372)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHHHHHH
T ss_pred hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHHHHHH
Confidence 33899999999999999999999999999999999999999999999999999998888777 666666666 3333344
Q ss_pred HHHhccCCCCCChhhhhhhhhhhccCCccccCCCCchhHhhhhccCCCCCCCCCCccc-ccchhHHHHHHHHhHHHHHHH
Q 044175 240 AIKNRKLSLPENPEELYEINEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRV-CTLTQVEEVKILTRMMPILAS 318 (537)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~ 318 (537)
..++.....|....+.....+...+.... ......+....... ....|.. +..+++++.+.+.+.++.+.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~k~~~~~~~~~~~ 219 (372)
T PF00854_consen 148 AFKKRKLAVPKGSSWLDWALFQYSERSIF-----GIIVFIRAAVIFFP---EIFFWALFCQVQRVEELKALIRFLPIFLF 219 (372)
T ss_dssp HHHHHCCCH-HHHHHHHHHHHHHCCCCCC-----CCCCHHHHHHHHCC---CHHHHTTTSSTTTHHHCCHHHCHHHCCCH
T ss_pred HHHHhhcccccchHHHHHhhhhhhhhhhh-----hhhhhccchhhhhh---hhhhcccCCccceeeeeeeeeeccccCeE
Confidence 44444443332222222221111000000 00001110000000 0001111 223445666777777777777
Q ss_pred HHHHHHhhhhcchhhheeccccCCCCCc-cccCCCcccccchHhHHHHhhhhcchhccccccccCCCCCCCchHHHHHHH
Q 044175 319 TILMNTCLAQLQTFSVTQGAYMDPQLGS-IKVPTPSIPVIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGL 397 (537)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~g~ 397 (537)
.+.++....+.......+...++....+ +.+|++.+++++++.++++.|+.+++.+|+.++.. .++...++.+|+
T Consensus 220 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~~~----~~~~~~k~~~G~ 295 (372)
T PF00854_consen 220 WIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRRGI----QPSPPQKFGIGM 295 (372)
T ss_dssp HHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT----------HHHHHHH-
T ss_pred EEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhhhcc----cchhhhhhhHHH
Confidence 7777777777777666777667666666 78999999999999999999999999999887322 358999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchhHHHHHHHHHHH
Q 044175 398 VLSAVSMTIAGFVEVQRRNAFNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSL 473 (537)
Q Consensus 398 ~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~ 473 (537)
+++.++++.....+..+......++ ..+.+|.++.+++..++|.+..+.+.+..+|.+|++..+..+|++....
T Consensus 296 ~~~~~~~~~~~~v~~~r~~~~~~~~--~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~~~~~ 369 (372)
T PF00854_consen 296 VFAILAMFVAAIVEIRRLCYAQPCG--KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIWFALS 369 (372)
T ss_dssp HHHHHHHHTTTHHHH---HH----T--T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhcccccC--CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHHHHHh
Confidence 9999999988877765443333332 2344777799999999999999999997777777777777777766544
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-22 Score=206.38 Aligned_cols=154 Identities=13% Similarity=0.141 Sum_probs=135.9
Q ss_pred HHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCC
Q 044175 36 ISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGK 115 (537)
Q Consensus 36 ~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 115 (537)
....+++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++..++..+.
T Consensus 14 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~------------ 80 (399)
T TIGR00893 14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFAG------------ 80 (399)
T ss_pred hHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHHc------------
Confidence 4444567889999999999999999999999999999999995 999999999999999998888763
Q ss_pred CCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 044175 116 SSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVSTEKAW 195 (537)
Q Consensus 116 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~ 195 (537)
+.+.++++|+++|++.+...+...+++.|.+|+++ |++.+++.....++|..++|.+++++.+..+|
T Consensus 81 -------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 147 (399)
T TIGR00893 81 -------AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVGWILIHFSW 147 (399)
T ss_pred -------CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHHHHHHhCCc
Confidence 67889999999999999999999999999999776 89999999999999999999999998888899
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 044175 196 WGGFLISSIVTFIGFIALVI 215 (537)
Q Consensus 196 ~~~f~i~~~~~~~~~~~~~~ 215 (537)
++.|++.++..++..+..+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~ 167 (399)
T TIGR00893 148 QWAFIIEGVLGIIWGVLWLK 167 (399)
T ss_pred hHHHHHHHHHHHHHHHHhhh
Confidence 99998877665554444433
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-21 Score=212.59 Aligned_cols=155 Identities=10% Similarity=0.072 Sum_probs=129.9
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 044175 35 AISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCG 114 (537)
Q Consensus 35 ~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 114 (537)
.....+.+.+++|++..+.+++.+++.++..++.+++|+++||+ |||+++++++++..++.++++++.
T Consensus 186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~~i~~ll~afa~----------- 253 (742)
T TIGR01299 186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVNGFFAFFSSFVQ----------- 253 (742)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHh-----------
Confidence 44555677788999999999999999999999999999999995 999999999999999988888764
Q ss_pred CCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccc--
Q 044175 115 KSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVSTE-- 192 (537)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~-- 192 (537)
+...++++|+++|+|.|+..+...++++|.+|.+. |++.+++......+|.++++.++.++...
T Consensus 254 --------s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~iG~ila~~la~~il~~~G 319 (742)
T TIGR01299 254 --------GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMIGGIYAAAMAWAIIPHYG 319 (742)
T ss_pred --------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 67889999999999999999999999999999776 88999988888889998888776554322
Q ss_pred -----------ccchHHHHHHHHHHHHHHHHHHh
Q 044175 193 -----------KAWWGGFLISSIVTFIGFIALVI 215 (537)
Q Consensus 193 -----------~g~~~~f~i~~~~~~~~~~~~~~ 215 (537)
.+||+.|++.++..++.++..++
T Consensus 320 ~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~ 353 (742)
T TIGR01299 320 WSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTF 353 (742)
T ss_pred chhccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 36898888877665555444433
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.8e-22 Score=200.16 Aligned_cols=153 Identities=12% Similarity=0.000 Sum_probs=121.4
Q ss_pred HHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCC
Q 044175 36 ISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGK 115 (537)
Q Consensus 36 ~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 115 (537)
....+.+++++|+++.+.+++.+.+.+++.++.++.|+++||+ |||+++..+......+. +.....
T Consensus 11 ~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~-~~~~~~------------ 76 (368)
T TIGR00903 11 SPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAA-GRLLDP------------ 76 (368)
T ss_pred HhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHH-HHHHHh------------
Confidence 4444566789999999999999999999999999999999995 99988765544444433 222321
Q ss_pred CCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 044175 116 SSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVSTEKAW 195 (537)
Q Consensus 116 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~ 195 (537)
.+...++++|+++|+|.|.. +.....++|++|+++ |++++++...+..+|..+++.+++++.+++||
T Consensus 77 ------~~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gW 143 (368)
T TIGR00903 77 ------FNYEWLLACQLLAALGQPFL-LNAFAPAASQIREER------RDLVISLLSFAMYLGIIFALAAGLKIYTAGGL 143 (368)
T ss_pred ------ccHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccch
Confidence 26788999999999999864 555566789999776 99999999999999999999999999989999
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 044175 196 WGGFLISSIVTFIGFIALVI 215 (537)
Q Consensus 196 ~~~f~i~~~~~~~~~~~~~~ 215 (537)
|..|++.+++.++..++++.
T Consensus 144 r~~f~~~~~l~~~~~~~~~~ 163 (368)
T TIGR00903 144 QLLIIPIAAVAAAGIILVLA 163 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99998866655444444433
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-21 Score=207.37 Aligned_cols=179 Identities=10% Similarity=0.045 Sum_probs=153.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHH
Q 044175 13 GFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLE 92 (537)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~ 92 (537)
+.+.++.+.+..++..+..+.+.+.++.+.+ ++|.++.+.+++.+.+.++..++.++.|+++||+ ||||++..+.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~ 85 (471)
T PRK10504 8 VRWQLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLF 85 (471)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHH
Confidence 3456788888888888888888888887764 6999999999999999999999999999999995 9999999998888
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHH
Q 044175 93 VLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFL 172 (537)
Q Consensus 93 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 172 (537)
.++.+++..+. +...++++|+++|++.|...|...+.+.|.+|+++ |+++++...
T Consensus 86 ~~~~~~~~~~~-------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 140 (471)
T PRK10504 86 TLGSLFCALSG-------------------TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------YMAAMTFVT 140 (471)
T ss_pred HHHHHHHHHhC-------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------HHHHHHHHH
Confidence 88888776653 66788899999999999999999999999998665 888999998
Q ss_pred HHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHhccc
Q 044175 173 LTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKP 218 (537)
Q Consensus 173 ~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~ 218 (537)
...++|..++|.+++++.+..+|++.|.+..+...+..+......+
T Consensus 141 ~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~ 186 (471)
T PRK10504 141 LPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMP 186 (471)
T ss_pred HHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8899999999999999999899999999887766555544444333
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-21 Score=203.38 Aligned_cols=177 Identities=12% Similarity=0.040 Sum_probs=147.7
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHH
Q 044175 12 GGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTL 91 (537)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~ 91 (537)
.+|+.+..+.+..+++......+... .+.+++++|++..+.+++.+++.++..++.++.|+++||+ ||||++..++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~ 82 (412)
T TIGR02332 5 LFRRLIIFLFILFIFSFLDRINIGFA-GLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMVL 82 (412)
T ss_pred ehhHHHHHHHHHHHHHHhhhhhHHHH-HHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHHH
Confidence 35666666666666666655544444 4478899999999999999999999999999999999995 999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHH
Q 044175 92 EVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYF 171 (537)
Q Consensus 92 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 171 (537)
..++.++++++. +...+++.|+++|++.|...|....+++|++|+++ |++.++++
T Consensus 83 ~~~~~~~~~~~~-------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------rg~~~~~~ 137 (412)
T TIGR02332 83 WGIASTATMFAT-------------------GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------RARANALF 137 (412)
T ss_pred HHHHHHHHHHhc-------------------CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------HHHHHHHH
Confidence 999999988864 67889999999999999999999999999999776 89999999
Q ss_pred HHHHHHHHHHHHHHHhhhcc------cccchHHHHHHHHHHHHHHHHHHh
Q 044175 172 LLTTTLAAVIGVTAIVYVST------EKAWWGGFLISSIVTFIGFIALVI 215 (537)
Q Consensus 172 ~~~~~~g~~i~~~~~~~l~~------~~g~~~~f~i~~~~~~~~~~~~~~ 215 (537)
.....+|..+++.+++++.+ ..|||+.|++.++..++..++.++
T Consensus 138 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~ 187 (412)
T TIGR02332 138 MIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWF 187 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999988753 369999999877665544443333
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.8e-22 Score=206.29 Aligned_cols=164 Identities=10% Similarity=0.032 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHH
Q 044175 19 FIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVM 98 (537)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l 98 (537)
..++..++..+..+.....++.+ .+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~ 104 (434)
T PRK11663 27 TMYLGYALFYFTRKSFNAAMPEM-LADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGIINIL 104 (434)
T ss_pred HHHHHHHHHHHhhhhHHHhhHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHHHHHH
Confidence 33444444444434444555544 467999999999999999999999999999999995 9999999999999999988
Q ss_pred HHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHH
Q 044175 99 ITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLA 178 (537)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 178 (537)
+..+. +...+++.|++.|++.|...+...++++|++|+++ |++++++.+.+.++|
T Consensus 105 ~~~~~-------------------~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g 159 (434)
T PRK11663 105 FGFSS-------------------SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGWWAIWNTAHNVG 159 (434)
T ss_pred HHHHh-------------------HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHHHHHHHHHHHHH
Confidence 88764 67788889999999999999999999999999777 899999999999999
Q ss_pred HHHHHHHHhhhcccccchHHHHHHHHHHHHH
Q 044175 179 AVIGVTAIVYVSTEKAWWGGFLISSIVTFIG 209 (537)
Q Consensus 179 ~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~ 209 (537)
..++|.+++++.+.+|||+.|.+.++..++.
T Consensus 160 ~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~ 190 (434)
T PRK11663 160 GALIPLVVGAIALHYGWRYGMMIAGIIAIVV 190 (434)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 9999999999988899999998877654433
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-22 Score=202.23 Aligned_cols=358 Identities=11% Similarity=0.037 Sum_probs=228.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHH
Q 044175 19 FIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVM 98 (537)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l 98 (537)
.+....++..++.......++.|.. +++.+..+.+++.+.+.++..++.++.|+++||+ ||||++..+.++..++.++
T Consensus 3 ~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~ 80 (365)
T TIGR00900 3 LLFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAV 80 (365)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHH
Confidence 3556667777777666777777765 5899999999999999999999999999999995 9999999999988888877
Q ss_pred HHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHH
Q 044175 99 ITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLA 178 (537)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 178 (537)
.......+ ..+.+.++++|+++|++.+...+...+++.|.+|+++ |++.+++...+.++|
T Consensus 81 ~~~~~~~~--------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g 140 (365)
T TIGR00900 81 LPFVALLG--------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSLSQAVRSLF 140 (365)
T ss_pred HHHHHHcC--------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhHHHHHHHHH
Confidence 77653211 1267889999999999999999999999999999776 899999999999999
Q ss_pred HHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHhccccccccCCCCCchhhHHHHHHHHHHhccCCCCCChhhhhhh
Q 044175 179 AVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQVVVVAIKNRKLSLPENPEELYEI 258 (537)
Q Consensus 179 ~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (537)
..++|.+++++.+..+|+..|++.++..++..+..+..+.+.+++ +++++.+ ++ . .+
T Consensus 141 ~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------------------~~--~-~~- 197 (365)
T TIGR00900 141 YIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAA-SEIQALS------------------NA--V-LR- 197 (365)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCC-ccccccc------------------hh--H-HH-
Confidence 999999999998888999999887765554444333322111100 0000000 00 0 00
Q ss_pred hhhhccCCccccCCCCchhHhhhhccCCCCCCCCCCcccccchhHHHHHHHHhHHHH-HHHHHHHHHhhhhcchhhheec
Q 044175 259 NEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVKILTRMMPI-LASTILMNTCLAQLQTFSVTQG 337 (537)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~ 337 (537)
+..+ .++ +....+.+...... ......+........+.+..+.
T Consensus 198 ------------------~~~~-------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (365)
T TIGR00900 198 ------------------DTRE-------------GIK-----FVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKY 241 (365)
T ss_pred ------------------HHHh-------------HHH-----HHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 0000 000 00000111111111 1111111111111112221111
Q ss_pred cccCCCCCccccCCCcccccchHhHHHHhhhhcchhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044175 338 AYMDPQLGSIKVPTPSIPVIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVEVQRRNA 417 (537)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~ 417 (537)
.+.+. ...+.......+..++..++..++. +|. ++.+.+..+..+.+++........
T Consensus 242 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~----~~~-------~~~~~~~~~~~~~~~~~~~~~~~~------ 298 (365)
T TIGR00900 242 LGRGS------THYGWVLAAFGLGALLGALLLGLLG----RYF-------KRMALMTGAIFVIGLAILVVGLTP------ 298 (365)
T ss_pred hCCch------HHHHHHHHHHHHHHHHHHHHHHHHH----HHh-------chhHHHHHHHHHHHHHHHHHHhhc------
Confidence 11111 1112222333344444444444322 232 233444555555566555544421
Q ss_pred hccCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044175 418 FNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLSFGNFLSSVFVDIIN 488 (537)
Q Consensus 418 ~~~~g~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~~~~~l~~~i~ 488 (537)
+ +.+......++.+++.....+...++..+.+|++.|+++.|+.+....++..+++.+.+.+.
T Consensus 299 -------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~ 361 (365)
T TIGR00900 299 -------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLA 361 (365)
T ss_pred -------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 24555667788899999999999999999999999999999999999999999999888765
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-22 Score=202.41 Aligned_cols=166 Identities=22% Similarity=0.282 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHH
Q 044175 21 FVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMIT 100 (537)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~ 100 (537)
++..++..++.....+.++.++.+++|.+..+.+++.+.+.+...++.++.|+++||+ ||||++..+.++.+++..+..
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~ 80 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLA 80 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhh
Confidence 4556667777766667777688899999999999999999999999999999999995 999999999999999966555
Q ss_pred HHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHH
Q 044175 101 VQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAV 180 (537)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ 180 (537)
++. +.+.++++|++.|++.+...+...+++.|.+|+++ |++.++....+.++|..
T Consensus 81 ~~~-------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~~ 135 (352)
T PF07690_consen 81 FAS-------------------NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAGFSLGSI 135 (352)
T ss_dssp HHC-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHHHHHHHH
T ss_pred hhh-------------------hHHHHhhhccccccccccccccccccccccchhhh------hhhccccccchhhhhhh
Confidence 542 45589999999999999999999999999999888 99999999999999999
Q ss_pred HHHHHHhhhcccccchHHHHHHHHHHHHHHHH
Q 044175 181 IGVTAIVYVSTEKAWWGGFLISSIVTFIGFIA 212 (537)
Q Consensus 181 i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~ 212 (537)
++|.+++++.+..+|++.|++.++..++..++
T Consensus 136 ~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il 167 (352)
T PF07690_consen 136 LGPLLGGFLISYFGWRWAFLISAILSLIAAIL 167 (352)
T ss_dssp HHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhccccccccccccchhhhhhhh
Confidence 99999999998889999999988877666554
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.3e-22 Score=203.58 Aligned_cols=385 Identities=13% Similarity=0.071 Sum_probs=239.8
Q ss_pred CCcc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhh-----HHHHHHHHHHHHHHHhhHhHHHhhhccchhHHH
Q 044175 12 GGFR-ACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAG-----ASNTLTNLMGSTFLLCLVGGFISDTFLSRFATC 85 (537)
Q Consensus 12 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~ 85 (537)
.+|+ ....+.+..++..+++....+.++.|++ ++|.+..+ .+.+.+.+.+...++.++.|+++||+ |||+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~ 87 (408)
T PRK09874 10 INWKRNLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIML 87 (408)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHH
Confidence 3444 4666677888888888888888888875 58888655 37888899999999999999999995 999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhh
Q 044175 86 LIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALA 165 (537)
Q Consensus 86 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 165 (537)
..+.++..++.+++.... +.+.+++.|++.|++.+ ..+....++.|.+|+++ |+
T Consensus 88 ~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~------~~ 141 (408)
T PRK09874 88 LRSALGMGIVMVLMGLAQ-------------------NIWQFLILRALLGLLGG-FVPNANALIATQVPRNK------SG 141 (408)
T ss_pred HHHHHHHHHHHHHHHHHh-------------------hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh------hh
Confidence 999998888888777653 67788999999999865 45777788889988766 88
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHhccccccccCCCCCchhhHHHHHHHHHHhcc
Q 044175 166 SYFNYFLLTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQVVVVAIKNRK 245 (537)
Q Consensus 166 ~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 245 (537)
++.++.....++|..++|.+++.+.+..+|+..|++.++..++..+..+...++.++ +.+++...
T Consensus 142 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------------- 206 (408)
T PRK09874 142 WALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQ--PVSKKEML------------- 206 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcc--cccchhhh-------------
Confidence 999998888999999999999999888899999988776655544433332221110 00000000
Q ss_pred CCCCCChhhhhhhhhhhccCCccccCCCCchhHhhhhccCCCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHh
Q 044175 246 LSLPENPEELYEINEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVKILTRMMPILASTILMNTC 325 (537)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 325 (537)
+. + +..+. . .+.+ ...... .....+...
T Consensus 207 -----~~----~-------------------~~~~~--~-------------------~~~~-~~~~~~--~~~~~~~~~ 234 (408)
T PRK09874 207 -----HM----R-------------------EVVTS--L-------------------KNPK-LVLSLF--VTTLIIQVA 234 (408)
T ss_pred -----HH----H-------------------HHHHh--C-------------------cCCc-hHHHHH--HHHHHHHHH
Confidence 00 0 00000 0 0000 101010 000111111
Q ss_pred hhhcchhhheeccccCCCCCccccCCCcccccchHhHHHHhhhhcchhccccccccCCCCCCCchHHHHHHHHHHHHHHH
Q 044175 326 LAQLQTFSVTQGAYMDPQLGSIKVPTPSIPVIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMT 405 (537)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~ 405 (537)
.....+.+..+...............+.+..+..+..++..+...++.+++. +.+.+..+..+..++.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g-----------~~~~~~~~~~~~~~~~~ 303 (408)
T PRK09874 235 TGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIG-----------PEKILITALIFSVLLLI 303 (408)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------cchhHHHHHHHHHHHHH
Confidence 1111111111100000000000000111112223334444455555443332 22334455555555444
Q ss_pred HHHHHHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 044175 406 IAGFVEVQRRNAFNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLSFGNFLSSVFVD 485 (537)
Q Consensus 406 ~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~~~~~l~~ 485 (537)
..... .+.+.+....++.|++.+...|...+...+..|++.+|+..++.+....+|..+++.+.+
T Consensus 304 ~~~~~---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G 368 (408)
T PRK09874 304 PMSFV---------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGA 368 (408)
T ss_pred HHHHh---------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHH
Confidence 43332 123444455677888888889999999999999999999999999999999999999988
Q ss_pred HhhhhhccCCCCCCCCccCCCCCCchhHHHHHHHHHHHHHHHHHHhhhccc
Q 044175 486 IINAVTKRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYLYAAAW 536 (537)
Q Consensus 486 ~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~~~~~l~~~~~v~~~~~~~~ 536 (537)
.+.+. .++...|++.+++.+++.+..+...+|
T Consensus 369 ~l~~~-------------------~g~~~~f~~~~~~~l~~~~~~~~~~~~ 400 (408)
T PRK09874 369 AISAN-------------------YGFRAVFLVTAGVVLFNAVYSWNSLRR 400 (408)
T ss_pred HHHhh-------------------cchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76521 234567888888888877766654443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.1e-22 Score=203.06 Aligned_cols=175 Identities=14% Similarity=0.149 Sum_probs=150.3
Q ss_pred hhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHH
Q 044175 8 IKQKGGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLI 87 (537)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~ 87 (537)
+..+.+|+.+....+..+.+.+..+......+ .+++++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~ 82 (405)
T TIGR00891 5 HLTRAQWNAFSAAWLGWLLDAFDFFLVALVLA-EVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVT 82 (405)
T ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHH
Confidence 34456778888888888888888776655555 56788999999999999999999999999999999995 99999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhH
Q 044175 88 FGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASY 167 (537)
Q Consensus 88 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 167 (537)
+.++..++.+++..+. +...+++.|++.|++.+...+...+++.|.+|+++ |+++
T Consensus 83 ~~~~~~~~~~~~~~~~-------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~ 137 (405)
T TIGR00891 83 SIVLFSAGTLACGFAP-------------------GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL------RNKA 137 (405)
T ss_pred HHHHHHHHHHHHHHhc-------------------cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh------hhHH
Confidence 9999999988887763 67888999999999999999999999999999877 8999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccc--chHHHHHHHHHHHHH
Q 044175 168 FNYFLLTTTLAAVIGVTAIVYVSTEKA--WWGGFLISSIVTFIG 209 (537)
Q Consensus 168 ~~~~~~~~~~g~~i~~~~~~~l~~~~g--~~~~f~i~~~~~~~~ 209 (537)
.++.....++|..+++.+++.+.+..+ |++.|.+.++..++.
T Consensus 138 ~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~ 181 (405)
T TIGR00891 138 SGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA 181 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 999999999999999999988877665 999998765544433
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-21 Score=199.51 Aligned_cols=174 Identities=10% Similarity=0.094 Sum_probs=148.1
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHH
Q 044175 10 QKGGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFG 89 (537)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~ 89 (537)
.|..|+.+..+....++.....|.....++. +.+++|+++.+.++..+.+.+...++.++.|+++||+ ||||++..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~~~~ 92 (394)
T PRK10213 15 TRPNWSAVFSVAFCVACLIIVEFLPVSLLTP-MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVILFA 92 (394)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHHHH
Confidence 3456776666666656566666655556655 4568999999999999999999999999999999995 9999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHH
Q 044175 90 TLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFN 169 (537)
Q Consensus 90 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 169 (537)
++..++.+++.++. +.+.+++.|+++|++.|...+...+++.|++|+++ |+++.+
T Consensus 93 ~~~~~~~~~~~~~~-------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~------~~~a~~ 147 (394)
T PRK10213 93 VLLTLSCLLVSFAN-------------------SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT------VPKALS 147 (394)
T ss_pred HHHHHHHHHHHHHC-------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH------HHHHHH
Confidence 99999988887763 78899999999999999999999999999998777 899999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHH
Q 044175 170 YFLLTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGF 210 (537)
Q Consensus 170 ~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~ 210 (537)
....+.++|..++|.+++++.+.+|||+.|++.++..++..
T Consensus 148 ~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~ 188 (394)
T PRK10213 148 VIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCI 188 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998999999988766544433
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.6e-21 Score=198.44 Aligned_cols=174 Identities=17% Similarity=0.158 Sum_probs=138.6
Q ss_pred CcchHHHHHHHHHHHHHHH---HHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHH
Q 044175 13 GFRACGFIFVLSSLENMGF---IANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFG 89 (537)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~ 89 (537)
+.+..+..++..+.+...+ ....+.++. +.+++|.+..+.++..+.+.++..++.++.|+++||+ ||||++.++.
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~ 85 (406)
T PRK15402 8 GRQALLFPLCLVLFEFATYIANDMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGV 85 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHH
Confidence 4444555554444444433 333344443 5578999999999999999999999999999999995 9999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHH
Q 044175 90 TLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFN 169 (537)
Q Consensus 90 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 169 (537)
.+..++.+++..+. +...+++.|+++|++.+...+...+.+.|.+|+++ |.+..+
T Consensus 86 ~~~~~~~~~~~~~~-------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~ 140 (406)
T PRK15402 86 AFFILTCLAILLAQ-------------------SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITA 140 (406)
T ss_pred HHHHHHHHHHHHHc-------------------cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHH
Confidence 99999888877763 66788899999999999888888999999998776 777788
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHH
Q 044175 170 YFLLTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIAL 213 (537)
Q Consensus 170 ~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~ 213 (537)
.......+|..++|.+++++.+..+|++.|++.++..++..+..
T Consensus 141 ~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~ 184 (406)
T PRK15402 141 LMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGL 184 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHH
Confidence 87777788999999999999888899999988776655554433
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-21 Score=202.52 Aligned_cols=356 Identities=13% Similarity=0.077 Sum_probs=220.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHH
Q 044175 16 ACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLA 95 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~ 95 (537)
....+++..++..++........+.+. ++++.+..+.+++.+.+.++..++.++.|+++||+ ||||++..+.++..++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~ 95 (417)
T PRK10489 18 AFRAVFIARFISIFGLGLLGVAVPVQI-QMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLG 95 (417)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHH
Confidence 344555566777776655555566555 56788999999999999999999999999999995 9999999998888877
Q ss_pred HHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHH
Q 044175 96 LVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTT 175 (537)
Q Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 175 (537)
.+++....... ..+...+++.|++.|++.+...+...+.+.|..|+++ |+++.++.+...
T Consensus 96 ~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 155 (417)
T PRK10489 96 FIGLALNAFLP--------------EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAITMLTV 155 (417)
T ss_pred HHHHHHHHHcC--------------CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHHHHHHH
Confidence 76654321000 1256778889999999988888888899999988766 888899988899
Q ss_pred HHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHhccccccccCCCCCchhhHHHHHHHHHHhccCCCCCChhhh
Q 044175 176 TLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQVVVVAIKNRKLSLPENPEEL 255 (537)
Q Consensus 176 ~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 255 (537)
++|..++|.+++++.+..+|++.|.+.++..++..+..+..++ . ++++++.. +..+
T Consensus 156 ~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~---~~~~~~~~------------------~~~~-- 211 (417)
T PRK10489 156 RLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPA-L---PPPPQPRE------------------HPLR-- 211 (417)
T ss_pred hHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCC-C---CCCCcccc------------------cchH--
Confidence 9999999999999888889999998877665554444332211 1 11000000 0000
Q ss_pred hhhhhhhccCCccccCCCCchhHhhhhccCCCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHhhhhcchhhhe
Q 044175 256 YEINEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVKILTRMMPILASTILMNTCLAQLQTFSVT 335 (537)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 335 (537)
+..+. ++ .+...+.+ +...+..+..........+.+.+..
T Consensus 212 ---------------------~~~~~-------------~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~ 251 (417)
T PRK10489 212 ---------------------SLLAG-------------FR-----FLLASPVV-GGIALLGGLLTMASAVRVLYPALAD 251 (417)
T ss_pred ---------------------HHHHH-------------HH-----HHHcChHH-HHHHHHHHHHHHHHhHHHhhHHHHH
Confidence 00000 00 00000111 1111111111101111111111211
Q ss_pred eccccCCCCCccccCCCcccccchHhHHHHhhhhcchhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044175 336 QGAYMDPQLGSIKVPTPSIPVIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVEVQRR 415 (537)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~ 415 (537)
+..+.+. ...+.+.....+..++...+..++. +|. ++.+.+..+.++.+++++.....
T Consensus 252 ~~~g~~~------~~~g~~~~~~~~g~~ig~~~~~~l~----~~~-------~~~~~l~~~~~~~~~~~~~~~~~----- 309 (417)
T PRK10489 252 EVWQMGA------AQIGLLYAAVPLGAALGALTSGWLA----HSA-------RPGLLMLLSTLGSFLAVGLFGLM----- 309 (417)
T ss_pred hccCCCh------hHhHHHHHHHHHHHHHHHHHHHHhh----hcc-------CcchHHHHHHHHHHHHHHHHHcc-----
Confidence 1111111 1122233333444444444444422 221 22234555666666665554432
Q ss_pred hhhccCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044175 416 NAFNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLSFGNFLSSVFVDIINA 489 (537)
Q Consensus 416 ~~~~~~g~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~~~~~l~~~i~~ 489 (537)
.+.+......++.|++.+...+...++..+..|++.||++.|+.+....+|..+++.+.+.+.+
T Consensus 310 ----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~ 373 (417)
T PRK10489 310 ----------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGA 373 (417)
T ss_pred ----------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH
Confidence 2334445566777888777777888899999999999999999999999999999999997764
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=8e-22 Score=208.90 Aligned_cols=396 Identities=11% Similarity=0.051 Sum_probs=234.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHH
Q 044175 17 CGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLAL 96 (537)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~ 96 (537)
+..+....++..+...... ...+.+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~ 81 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTIVN-VAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLGS 81 (485)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHHH
Confidence 3444555555555544444 444556678999999999999999999999999999999995 99999999999999999
Q ss_pred HHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHH
Q 044175 97 VMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTT 176 (537)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 176 (537)
+++..+. +...++++|+++|++.+...+...+++.|.+|+++ |+++++++.....
T Consensus 82 ~~~~~~~-------------------~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~ 136 (485)
T TIGR00711 82 LLCGVAP-------------------NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRAMAIWGLTVL 136 (485)
T ss_pred HHHhCcC-------------------CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHH
Confidence 8888763 67889999999999999999999999999999776 8999999999999
Q ss_pred HHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHhccccccccCCCCCchhhHHHH--------HHHHHHhccCCC
Q 044175 177 LAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQV--------VVVAIKNRKLSL 248 (537)
Q Consensus 177 ~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--------~~~~~~~~~~~~ 248 (537)
+|..++|.+++++.++++||+.|++..+..++..+..++..++.+++ ++++.+..... +.....+.+...
T Consensus 137 ~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~ 214 (485)
T TIGR00711 137 VAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERG 214 (485)
T ss_pred HHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 99999999999999999999999987766555544443333321111 11111111110 001111111000
Q ss_pred CCChhhhhhhhhhhccCCccccCCCCchhHhhhhccCCCCCCCCCCcccccchhHHHHHHHHh-HHHHHHHHHHHHHhhh
Q 044175 249 PENPEELYEINEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVKILTR-MMPILASTILMNTCLA 327 (537)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~ 327 (537)
..++.......-... .....+..+.. +.+ .+..+++.+. .+.+.. .+........++...
T Consensus 215 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~-~~~--~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~- 275 (485)
T TIGR00711 215 WFDSNEILILSITGL---------VAIIAFVVWEL-TDD--NPLVDLRLFK------YRNFTIGCVYMSLLGLGLYGSF- 275 (485)
T ss_pred CCCchHHHHHHHHHH---------HHHHHHHHHHH-cCC--CCccCHHHHc------CCChHHHHHHHHHHHHHHHHHH-
Confidence 000000000000000 00000000000 000 0000010000 011111 111111111111111
Q ss_pred hcchhhheeccccCCCCCccccCCCcccccchHhHHHHhhhhcchhccccccccCCCCCCCchHHHHHHHHHHHHHHHHH
Q 044175 328 QLQTFSVTQGAYMDPQLGSIKVPTPSIPVIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIA 407 (537)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~ 407 (537)
.+.+.+.....+.+. ...+.......+..++..++..++.+++ ++.+.+..|..+.+++....
T Consensus 276 ~~~p~~~~~~~g~s~------~~~g~~~~~~~~~~~~~~~~~g~l~~r~-----------~~~~~~~~g~~~~~~~~~~~ 338 (485)
T TIGR00711 276 YLLPLYLQQVLGYTA------LQAGLHILPVGLAPMLSSPIAGRMGDKI-----------DPRKLVTIGLILYAVGFYWR 338 (485)
T ss_pred HHHHHHHHHhcCCCH------HHHHHHHHHHHHHHHHHHHHHHHHHhhc-----------CcHHHHHHHHHHHHHHHHHH
Confidence 111212111111111 1112233334455555666666544332 23344666777777666554
Q ss_pred HHHHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044175 408 GFVEVQRRNAFNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLSFGNFLSSVFVDII 487 (537)
Q Consensus 408 ~~~~~~~~~~~~~~g~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~~~~~l~~~i 487 (537)
.... . ...+.+......++.|+|.+...+.....+.+..|++.++.++|+.+..+.+|+.+|+.+.+.+
T Consensus 339 ~~~~------~-----~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~ 407 (485)
T TIGR00711 339 AFTF------T-----PDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTI 407 (485)
T ss_pred hccC------C-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4210 0 0134445555678889999888888888888999999999999999999999999999887766
Q ss_pred h
Q 044175 488 N 488 (537)
Q Consensus 488 ~ 488 (537)
.
T Consensus 408 ~ 408 (485)
T TIGR00711 408 L 408 (485)
T ss_pred H
Confidence 5
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.5e-21 Score=199.37 Aligned_cols=170 Identities=15% Similarity=0.118 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcC---CchhhHHHHHHHH---HHHHHHHhhHhHHHhhhccchhHHHHHHHHHHH
Q 044175 20 IFVLSSLENMGFIANAISMVLYFKNEMH---FNLAGASNTLTNL---MGSTFLLCLVGGFISDTFLSRFATCLIFGTLEV 93 (537)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~yl~~~l~---~~~~~~~~~~~~~---~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~ 93 (537)
..+..+++.+.+.. .++..+++.++++ .+..+.+.+...+ .++..++.+++|+++||+ ||||++.++.+++.
T Consensus 27 ~~~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~~~~~~~ 104 (432)
T PRK10406 27 ASSGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLISVCMMC 104 (432)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHH
Confidence 33445666666544 5666678888874 4555444444444 444558999999999995 99999999999999
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHH
Q 044175 94 LALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLL 173 (537)
Q Consensus 94 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 173 (537)
++++++++++.+.... ..+...+++.|+++|+|.|+..|...++++|.+|+++ |++..+..+.
T Consensus 105 ~~~~~~~~~~~~~~~~-----------~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------rg~~~~~~~~ 167 (432)
T PRK10406 105 FGSLVIACLPGYETIG-----------TWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------KGFYASFQYV 167 (432)
T ss_pred HHHHHHhhcCCchhHH-----------HHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------ccHHHHHHHH
Confidence 9999988764211000 0123568899999999999999999999999999887 8888888877
Q ss_pred HHHHHHHHHHHHHhhhc--------ccccchHHHHHHHHHHHH
Q 044175 174 TTTLAAVIGVTAIVYVS--------TEKAWWGGFLISSIVTFI 208 (537)
Q Consensus 174 ~~~~g~~i~~~~~~~l~--------~~~g~~~~f~i~~~~~~~ 208 (537)
..+.|..+++.+...+. ..+|||.+|++.++..++
T Consensus 168 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll 210 (432)
T PRK10406 168 TLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVV 210 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHH
Confidence 77888887776654443 257999999987665443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.4e-22 Score=207.65 Aligned_cols=148 Identities=14% Similarity=0.042 Sum_probs=129.8
Q ss_pred hcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchh
Q 044175 45 EMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIA 124 (537)
Q Consensus 45 ~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (537)
++|++..+.+.+.+.+.+++.++.+++|+++||+ |||+++..+.++..++.+++..+.. .+.
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~-----------------~~~ 131 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAAG-----------------GGI 131 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHHH-----------------cCc
Confidence 6899999999999999999999999999999995 9999999999999988887765431 245
Q ss_pred HHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcccc-cchHHHHHHH
Q 044175 125 AYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVSTEK-AWWGGFLISS 203 (537)
Q Consensus 125 ~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~-g~~~~f~i~~ 203 (537)
..+++.|+++|++.+...|....+++|++|+++ |+++.++...+.++|..++|.+++++.+.+ +|+..|++.+
T Consensus 132 ~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~ 205 (465)
T TIGR00894 132 ALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFG 205 (465)
T ss_pred hHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhh
Confidence 678999999999999999999999999999877 999999999999999999999999998884 9999999887
Q ss_pred HHHHHHHHHHHhc
Q 044175 204 IVTFIGFIALVIG 216 (537)
Q Consensus 204 ~~~~~~~~~~~~~ 216 (537)
+..++..+.++..
T Consensus 206 ~~~~~~~~~~~~~ 218 (465)
T TIGR00894 206 IVGCAWSLLWFVF 218 (465)
T ss_pred HHHHHHHHHHHHH
Confidence 7666555555443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.4e-22 Score=201.85 Aligned_cols=155 Identities=15% Similarity=0.113 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 044175 31 FIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHP 110 (537)
Q Consensus 31 ~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 110 (537)
.|. .+...+++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.+++.++.
T Consensus 19 ~~~-~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~~------- 89 (377)
T TIGR00890 19 VYT-WTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFTFYAIAD------- 89 (377)
T ss_pred Hhh-hhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHHHHHHHH-------
Confidence 443 34556778889999999999999999999999999999999995 999999999999999998888874
Q ss_pred CCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 044175 111 PDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVS 190 (537)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~ 190 (537)
+...++++|++.|++.|...+.....+.|.+| ++ |+++.++.....++|..+++.+.+.+.
T Consensus 90 ------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~ 150 (377)
T TIGR00890 90 ------------SLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK------RGLASGIIIGGYGLGSFILSPLITSVI 150 (377)
T ss_pred ------------HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc------cHHHHHHHHHhcchhHhHHHHHHHHHH
Confidence 67889999999999999888888888888886 34 788888888888899887666666666
Q ss_pred ccccchHHHHHHHHHHHHHHHHH
Q 044175 191 TEKAWWGGFLISSIVTFIGFIAL 213 (537)
Q Consensus 191 ~~~g~~~~f~i~~~~~~~~~~~~ 213 (537)
+..+||+.|++.++..++..+..
T Consensus 151 ~~~~~~~~f~~~~~~~~~~~~~~ 173 (377)
T TIGR00890 151 NLEGVPAAFIYMGIIFLLVIVLG 173 (377)
T ss_pred hcccHHHHHHHHHHHHHHHHHHH
Confidence 77899999998777665554443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.1e-21 Score=196.96 Aligned_cols=177 Identities=14% Similarity=0.072 Sum_probs=147.8
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHH
Q 044175 12 GGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTL 91 (537)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~ 91 (537)
++++.++.+.+..+...++.....+..+ .+.+++|.++.+.+++.+.+.++..++.++.|+++||+ ||||++..+.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~ 79 (385)
T TIGR00710 2 SAKAFALLLGCLSILGPLGIDMYLPAFP-EIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFI 79 (385)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhcccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHH
Confidence 3455566666666666666555555554 45678999999999999999999999999999999995 999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHH
Q 044175 92 EVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYF 171 (537)
Q Consensus 92 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 171 (537)
..++.+++..+. +...+++.|++.|++.+...+...+++.|.+|+++ |++.+++.
T Consensus 80 ~~~~~~~~~~~~-------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 134 (385)
T TIGR00710 80 FALSSLGLALSN-------------------NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LSRIYSIL 134 (385)
T ss_pred HHHHHHHHHHHc-------------------cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HHHHHHHH
Confidence 999988887763 67788999999999999999999999999999776 89999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHh
Q 044175 172 LLTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVI 215 (537)
Q Consensus 172 ~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~ 215 (537)
+....+|..++|.+++++.+..+|+..|++.++..++..+..+.
T Consensus 135 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (385)
T TIGR00710 135 MPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFF 178 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988889999998877665555444433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.9e-21 Score=188.21 Aligned_cols=182 Identities=14% Similarity=0.097 Sum_probs=163.5
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHH
Q 044175 10 QKGGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFG 89 (537)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~ 89 (537)
.+..|..++.+.+..|+-...-+.....++.- .+++|.|..++|++++.|..+..++.|+...+.||+ .||++++..+
T Consensus 8 ~~~~~~~l~aLa~~~F~igttEfv~~gLLp~i-A~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~l 85 (394)
T COG2814 8 RKPMWLALLALALAAFAIGTTEFVPVGLLPPI-AADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGLL 85 (394)
T ss_pred cccchHHHHHHHHHHHHHHhHHHHHHhchHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHH
Confidence 34567788888888888888877666666654 578999999999999999999999999999999995 9999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHH
Q 044175 90 TLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFN 169 (537)
Q Consensus 90 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 169 (537)
.+++++.+++++++ ++..++++|++.|+..|.+++...+..+|..|+++ |+++.+
T Consensus 86 ~lFi~~n~l~alAp-------------------~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~~~Aia 140 (394)
T COG2814 86 ALFIVSNLLSALAP-------------------SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------RGRALA 140 (394)
T ss_pred HHHHHHHHHHHHhc-------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------hhhHHH
Confidence 99999999999995 88999999999999999999999999999999988 999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHhccc
Q 044175 170 YFLLTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKP 218 (537)
Q Consensus 170 ~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~ 218 (537)
....+..++.++|..++.++.+.+|||..|++-+...++.++..+...|
T Consensus 141 iv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 141 LVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999877777766666655544
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.9e-21 Score=196.61 Aligned_cols=157 Identities=11% Similarity=0.110 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHH
Q 044175 23 LSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQ 102 (537)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~ 102 (537)
+....+-.++...+.++ .+++++|+|.++.+++.+.+.++..++.++.|+++||+ |||+++..+..+++++.++++++
T Consensus 17 ~~~~~~~~~~~~~~~lp-~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~a 94 (393)
T PRK09705 17 IGLNMRPLLTSVGPLLP-QLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMRELY 94 (393)
T ss_pred HHHHcchhhhccchhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHHC
Confidence 33333334444444444 56689999999999999999999999999999999995 99999999999999999999987
Q ss_pred hhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHH
Q 044175 103 AYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIG 182 (537)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~ 182 (537)
+ ++..++++|+++|+|.+...+..+..+.|++| ++ |+++++.+..+.++|..++
T Consensus 95 ~-------------------~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~~g 148 (393)
T PRK09705 95 P-------------------QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGGGLG 148 (393)
T ss_pred c-------------------chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHHHHH
Confidence 4 67788999999999999999999999999887 55 7899999888889999999
Q ss_pred HHHHhhhcccc-cchHHHHHHHHHHH
Q 044175 183 VTAIVYVSTEK-AWWGGFLISSIVTF 207 (537)
Q Consensus 183 ~~~~~~l~~~~-g~~~~f~i~~~~~~ 207 (537)
+.+++++.++. +||..+.+.++..+
T Consensus 149 ~~~~~~l~~~~~~w~~~~~~~~~~~~ 174 (393)
T PRK09705 149 AAITPWLVQHSETWYQTLAWWALPAV 174 (393)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999888775 79988765444433
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.4e-21 Score=193.49 Aligned_cols=346 Identities=18% Similarity=0.160 Sum_probs=249.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHH
Q 044175 18 GFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALV 97 (537)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~ 97 (537)
+.+....++..++++...+..+.|. +++|.+..+.+++.+...+...++.++.|+++||+ ||||.+..+.++..++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~ 79 (352)
T cd06174 2 LLLFLGFFLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSL 79 (352)
T ss_pred HHHHHHHHHHHHhhhhhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHH
Confidence 3456667788888887778888776 46799999999999999999999999999999995 999999999999999998
Q ss_pred HHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHH
Q 044175 98 MITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTL 177 (537)
Q Consensus 98 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 177 (537)
++.... +...++++|++.|++.+...+...+++.|.+|+++ |++.+++.+...++
T Consensus 80 ~~~~~~-------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 134 (352)
T cd06174 80 LLAFAS-------------------SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGLFSAGFGL 134 (352)
T ss_pred HHHHhc-------------------cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhHHHHHHHH
Confidence 888763 67889999999999999999999999999999877 89999999999999
Q ss_pred HHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHhccccccccCCCCCchhhHHHHHHHHHHhccCCCCCChhhhhh
Q 044175 178 AAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQVVVVAIKNRKLSLPENPEELYE 257 (537)
Q Consensus 178 g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 257 (537)
|..++|.+++.+.+..+|+..|.+..+..++..+...+.+ +
T Consensus 135 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~-------------------------- 175 (352)
T cd06174 135 GALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL-------------R-------------------------- 175 (352)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------------H--------------------------
Confidence 9999999999998888899999887776555544433221 0
Q ss_pred hhhhhccCCccccCCCCchhHhhhhccCCCCCCCCCCcccccchhHHHHHHHHhHHHH-HHHHHHHHHhhhhcchhhhee
Q 044175 258 INEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVKILTRMMPI-LASTILMNTCLAQLQTFSVTQ 336 (537)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~ 336 (537)
........ ......... .....+.+..+
T Consensus 176 --------------------------------------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 204 (352)
T cd06174 176 --------------------------------------------------LLLLLALAFFLLSFGYYG-LLTYLPLYLQE 204 (352)
T ss_pred --------------------------------------------------HHHHHHHHHHHHHhHHHH-HHHHHHHHHHH
Confidence 00000000 001111111 11111111111
Q ss_pred ccccCCCCCccccCCCcccccchHhHHHHhhhhcchhccccccccCCCCCCCchH-HHHHHHHHHHHHHHHHHHHHHHHh
Q 044175 337 GAYMDPQLGSIKVPTPSIPVIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQ-RVGVGLVLSAVSMTIAGFVEVQRR 415 (537)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~r~~~~~~~~~~~~-~i~~g~~l~~~~~~~~~~~~~~~~ 415 (537)
..+.+ ....+.......+..++..++..++.++..+ .+ .+..+..+..++.......
T Consensus 205 ~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~i~~~~~~~~----- 262 (352)
T cd06174 205 VLGLS------AAEAGLLLSLFGLGGILGALLGGLLSDRLGR-----------RRLLLLIGLLLAALGLLLLALA----- 262 (352)
T ss_pred hcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHHHHHHHHh-----
Confidence 10111 1112233344455555565665554433222 22 5666777777776666553
Q ss_pred hhhccCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC
Q 044175 416 NAFNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLSFGNFLSSVFVDIINAVTKRIT 495 (537)
Q Consensus 416 ~~~~~~g~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~ 495 (537)
.+.+......++.+++.+...+...++..|..|++.|++.+|+.+...+++..+++.+.+.+.+.
T Consensus 263 ----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~----- 327 (352)
T cd06174 263 ----------PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT----- 327 (352)
T ss_pred ----------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----
Confidence 23556677788999999999999999999999999999999999999999999999998876521
Q ss_pred CCCCCCccCCCCCCchhHHHHHHHHHHHHHHHHHHh
Q 044175 496 PSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYL 531 (537)
Q Consensus 496 ~~~~~w~~~~~l~~~~~~~~f~~~~~l~~~~~v~~~ 531 (537)
.++...|++.+++.+++.+.++
T Consensus 328 --------------~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 328 --------------GGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred --------------cCcchHHHHHHHHHHHHHHHhe
Confidence 2334557777777777766544
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.2e-21 Score=193.71 Aligned_cols=168 Identities=13% Similarity=0.044 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHH-HHHHHHHHHHHH
Q 044175 21 FVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLI-FGTLEVLALVMI 99 (537)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~-~~~~~~i~~~l~ 99 (537)
.+..++..++.....+.++.|+++++|.+..+.+++.+.+.+...+..++.|+++||+ ||||.++. +.++..++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~ 81 (375)
T TIGR00899 3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLF 81 (375)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHH
Confidence 4557777888888889999999999999999999999999999999999999999995 99987665 445555666666
Q ss_pred HHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhh--HHHHHHHHHHH
Q 044175 100 TVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALAS--YFNYFLLTTTL 177 (537)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~--~~~~~~~~~~~ 177 (537)
..+. +...+++.|++++.+.+...|...++..|..++++ |.+ ..+......++
T Consensus 82 ~~~~-------------------~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 136 (375)
T TIGR00899 82 AWNR-------------------NYFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFSSVMRAQISL 136 (375)
T ss_pred Hhcc-------------------hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHHHHHHHHHhH
Confidence 6553 56777888988888877778888888888776544 333 35666677889
Q ss_pred HHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHH
Q 044175 178 AAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALV 214 (537)
Q Consensus 178 g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~ 214 (537)
|..++|.+++++.+..+||+.|++.++..++..+..+
T Consensus 137 g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~ 173 (375)
T TIGR00899 137 AWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVW 173 (375)
T ss_pred HHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998889999999988776555544433
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-20 Score=198.05 Aligned_cols=175 Identities=12% Similarity=0.035 Sum_probs=129.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhh-HHH-----HHHHHHHHHHHHhhHhHHHhhhccchhHHHHH
Q 044175 14 FRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAG-ASN-----TLTNLMGSTFLLCLVGGFISDTFLSRFATCLI 87 (537)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~-~~~-----~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~ 87 (537)
++.+....+..++|.+.+. +..+..+++.++++.+.++ .++ +.++..++..++.++.|+++||+ |||+++.+
T Consensus 15 ~~~~~~~~~g~~~~~~d~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~ 92 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFG-VYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAI 92 (490)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHH
Confidence 4555566677777777654 4556667888887644322 122 24666788999999999999995 99999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhH
Q 044175 88 FGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASY 167 (537)
Q Consensus 88 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 167 (537)
+.++++++++++++++++..+. ...+.++++.|+++|+|.|+..+...++++|++|+++ |++.
T Consensus 93 ~~~l~~i~~~~~a~~~~~~~~g-----------~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~------Rg~~ 155 (490)
T PRK10642 93 TIVIMSISTFCIGLIPSYATIG-----------IWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK------RGFM 155 (490)
T ss_pred HHHHHHHHHHHHHhcccHHHHH-----------HHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC------CcHH
Confidence 9999999999999875211000 0001248899999999999999999999999999888 8888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc--------ccccchHHHHHHHHHHH
Q 044175 168 FNYFLLTTTLAAVIGVTAIVYVS--------TEKAWWGGFLISSIVTF 207 (537)
Q Consensus 168 ~~~~~~~~~~g~~i~~~~~~~l~--------~~~g~~~~f~i~~~~~~ 207 (537)
.++...+..+|..+++.+...+. ..+|||+.|++.++..+
T Consensus 156 ~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l 203 (490)
T PRK10642 156 GSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGI 203 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHH
Confidence 88887777777777775554332 25799999998765444
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.3e-21 Score=199.23 Aligned_cols=166 Identities=8% Similarity=0.074 Sum_probs=143.2
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHH
Q 044175 12 GGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTL 91 (537)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~ 91 (537)
.+++.+....+..+.+.+.++.. .+...++++++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++.++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~~ 92 (426)
T PRK12307 15 PQKNALFSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIVA 92 (426)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHH
Confidence 34555666666666666666544 4444567789999999999999999999999999999999995 999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHH
Q 044175 92 EVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYF 171 (537)
Q Consensus 92 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 171 (537)
..++.+++.++. +...++++|+++|++.|...+....++.|.+|+++ |+++.++.
T Consensus 93 ~~~~~~~~~~~~-------------------~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~~~~~~ 147 (426)
T PRK12307 93 YSVGTGLSGLAS-------------------GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSKASAFL 147 (426)
T ss_pred HHHHHHHHHHHh-------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhHhhhHH
Confidence 999998888774 67889999999999999999999999999999877 88999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccccchHHHHHHHH
Q 044175 172 LLTTTLAAVIGVTAIVYVSTEKAWWGGFLISSI 204 (537)
Q Consensus 172 ~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~ 204 (537)
..+..+|..+++.+.+.+.+..+||+.|++...
T Consensus 148 ~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~ 180 (426)
T PRK12307 148 VSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLL 180 (426)
T ss_pred HHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHH
Confidence 889999999999999998888999999987554
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.5e-21 Score=195.55 Aligned_cols=171 Identities=13% Similarity=0.095 Sum_probs=140.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHH
Q 044175 13 GFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLE 92 (537)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~ 92 (537)
+|+.+...++..+.....++ ......+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~ 92 (398)
T TIGR00895 15 QWRAIILSFLIMLMDGYDLA-AMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSILLF 92 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHHHH
Confidence 34444444444555544444 344455566778999999999999999999999999999999995 9999999999988
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHH
Q 044175 93 VLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFL 172 (537)
Q Consensus 93 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 172 (537)
.++.+++.... +...+++.|++.|++.+...+...++++|.+|+++ |++.+++..
T Consensus 93 ~~~~~~~~~~~-------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~ 147 (398)
T TIGR00895 93 SVFTLLCALAT-------------------NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------RGTAVGLMF 147 (398)
T ss_pred HHHHHHHHHcc-------------------chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------hchhHhhHh
Confidence 88888777653 66788899999999999999999999999998776 899999999
Q ss_pred HHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHH
Q 044175 173 LTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGF 210 (537)
Q Consensus 173 ~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~ 210 (537)
...++|..+++.+++++.+..+|+..|++.++...+..
T Consensus 148 ~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~ 185 (398)
T TIGR00895 148 CGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLL 185 (398)
T ss_pred hHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHH
Confidence 99999999999999999988999999988754443333
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-20 Score=195.45 Aligned_cols=175 Identities=15% Similarity=0.116 Sum_probs=126.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--CCchhhHHHHHH-----HHHHHHHHHhhHhHHHhhhccchhHHH
Q 044175 13 GFRACGFIFVLSSLENMGFIANAISMVLYFKNEM--HFNLAGASNTLT-----NLMGSTFLLCLVGGFISDTFLSRFATC 85 (537)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l--~~~~~~~~~~~~-----~~~~~~~~~~~~~G~laD~~~Gr~~~~ 85 (537)
++|.+....+..++|...........+.+..+++ +.++. .+++.+ +..++..++.++.|+++||+ |||+++
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr~~l 97 (438)
T PRK09952 20 ARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRKRML 97 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccHHHH
Confidence 4555666666667766665544444455565555 56665 344432 33455667888889999995 999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhh
Q 044175 86 LIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALA 165 (537)
Q Consensus 86 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 165 (537)
.++.+++.+++++++++++.+.+. ......+++.|+++|++.|...+....++.|.+|+++ |+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg 160 (438)
T PRK09952 98 MLTVWMMGIATALIGLLPSFSTIG-----------WWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK------KA 160 (438)
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHH-----------HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC------Cc
Confidence 999999999999999875211000 0012258889999999999999999999999999887 88
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhc--------ccccchHHHHHHHHHH
Q 044175 166 SYFNYFLLTTTLAAVIGVTAIVYVS--------TEKAWWGGFLISSIVT 206 (537)
Q Consensus 166 ~~~~~~~~~~~~g~~i~~~~~~~l~--------~~~g~~~~f~i~~~~~ 206 (537)
+..+....+..+|..++..+..++. ..+|||..|++.++..
T Consensus 161 ~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~ 209 (438)
T PRK09952 161 FYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLV 209 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHH
Confidence 8888887788888888876665553 2579999998876654
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-20 Score=192.25 Aligned_cols=172 Identities=12% Similarity=0.094 Sum_probs=148.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHH
Q 044175 14 FRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEV 93 (537)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~ 93 (537)
++.++.+....+......+...+.++. +++++|++..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~ 79 (382)
T PRK10091 2 KKVILSLALGTFGLGMAEFGIMGVLTE-LAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCV 79 (382)
T ss_pred cchHHHHHHHHHHHHhhHHHHHhChHH-HHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHH
Confidence 356777778888888877777776665 5678999999999999999999999999999999995 99999999999999
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHH
Q 044175 94 LALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLL 173 (537)
Q Consensus 94 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 173 (537)
++.+++..+. +.+.+++.|+++|++.|...+...+++.|.+++++ |++.++....
T Consensus 80 ~~~~l~~~~~-------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 134 (382)
T PRK10091 80 IGNAMFTLSS-------------------SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAAVAGMVS 134 (382)
T ss_pred HHHHHHHHhC-------------------cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHHHHHHHH
Confidence 9999888774 67889999999999999988888888999988766 7888888888
Q ss_pred HHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHH
Q 044175 174 TTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIA 212 (537)
Q Consensus 174 ~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~ 212 (537)
...+|..++|.+++++.+..+||+.|.+.++...+..+.
T Consensus 135 ~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~ 173 (382)
T PRK10091 135 GMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLAS 173 (382)
T ss_pred HHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHH
Confidence 889999999999999988889999999877765544443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-20 Score=191.76 Aligned_cols=160 Identities=9% Similarity=0.039 Sum_probs=139.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHH
Q 044175 13 GFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLE 92 (537)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~ 92 (537)
..|.++.+++..++..++...+.+.++.|++ ++|.|..+.+++.+.+.++..++.++.|+++||+ ||||++..+.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~ 81 (381)
T PRK03633 4 YTRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIF 81 (381)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHH
Confidence 4567889999999999998888888888876 6899999999999999999999999999999995 9999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHH
Q 044175 93 VLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFL 172 (537)
Q Consensus 93 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 172 (537)
.++...+..+. +...++++|+++|++.+...+...+.+.|..++++ |++.++.+.
T Consensus 82 ~~~~~~~~~~~-------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 136 (381)
T PRK03633 82 AAGCAGLGLMV-------------------GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RGRLLAAYM 136 (381)
T ss_pred HHHHHHHHHhc-------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHH
Confidence 99988887763 67888999999999999988888777888877665 899999999
Q ss_pred HHHHHHHHHHHHHHhhhcccccchHHH
Q 044175 173 LTTTLAAVIGVTAIVYVSTEKAWWGGF 199 (537)
Q Consensus 173 ~~~~~g~~i~~~~~~~l~~~~g~~~~f 199 (537)
...++|..++|.+++.+.+...+...+
T Consensus 137 ~~~~~g~~~g~~~~~~l~~~~~~~~~~ 163 (381)
T PRK03633 137 MVYYLGTVLGQLLVSKVSTELMSVLPW 163 (381)
T ss_pred HHHHHHHHHHHHHHhcccccccchHHH
Confidence 999999999999999887654344333
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-20 Score=191.19 Aligned_cols=190 Identities=13% Similarity=0.080 Sum_probs=135.8
Q ss_pred CcccccchhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHH-HHHHHhhHhHHHhhhcc
Q 044175 1 MEDKVATIKQKGGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMG-STFLLCLVGGFISDTFL 79 (537)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~G~laD~~~ 79 (537)
|.+.|..+..+....+.+..++..++.+++.....+.++.|+++++|.+.++.|.+.+...+ ...++++++|+ +||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~- 78 (393)
T PRK15011 1 MHNSPAVSSAKSFDLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR- 78 (393)
T ss_pred CCCCcccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-
Confidence 44556655555566678888888999999999999999999999999999999999877655 55555555666 9995
Q ss_pred chhHHHH-HHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCCh
Q 044175 80 SRFATCL-IFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDP 158 (537)
Q Consensus 80 Gr~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~ 158 (537)
||||.++ .+.++..++..+..++. +...+++.+.+.+...+...|...++..|..++++
T Consensus 79 g~r~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 138 (393)
T PRK15011 79 GDRKSLIVFCCLLGVLACTLFAWNR-------------------NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTG- 138 (393)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhh-------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcc-
Confidence 9998755 55555556666666553 45555544444443344667777777777655433
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHh
Q 044175 159 KGAKALASYFNYFLLTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVI 215 (537)
Q Consensus 159 ~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~ 215 (537)
| ..+...+....+.++|.+++|.+++++.++.|||..|++.++..++..+..+.
T Consensus 139 --~-~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 192 (393)
T PRK15011 139 --R-EAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWL 192 (393)
T ss_pred --c-hHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence 0 02334467777889999999999999998899999998877665555444333
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-20 Score=196.42 Aligned_cols=171 Identities=9% Similarity=0.036 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHH
Q 044175 19 FIFVLSSLENMGFIAN---AISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLA 95 (537)
Q Consensus 19 ~~~~~~~~~~~~~~~~---~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~ 95 (537)
.++...++....+|.. .....+++.++ |++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.+++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~ 106 (452)
T PRK11273 29 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAV 106 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHH
Confidence 3334444444444433 23445677777 99999999999999999999999999999995 9999999999999998
Q ss_pred HHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHH
Q 044175 96 LVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTT 175 (537)
Q Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 175 (537)
.+.+.+.... ..+...+++.|++.|++.|...+.....+.|++|+++ |++++++++.+.
T Consensus 107 ~~~~~~~~~~---------------~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~ 165 (452)
T PRK11273 107 MLFMGFVPWA---------------TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAH 165 (452)
T ss_pred HHHHHhhhcc---------------cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHH
Confidence 8887765310 1256678888999999999998888888999998777 899999988888
Q ss_pred HHHHH-HHHHHHhhhcccccchHHHHHHHHHHHHHHHH
Q 044175 176 TLAAV-IGVTAIVYVSTEKAWWGGFLISSIVTFIGFIA 212 (537)
Q Consensus 176 ~~g~~-i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~ 212 (537)
++|+. .+|+.+..+....+||+.|++.++..++..++
T Consensus 166 ~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l 203 (452)
T PRK11273 166 NVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALF 203 (452)
T ss_pred HhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 88864 45554433333458999998877655544333
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.4e-20 Score=190.86 Aligned_cols=164 Identities=10% Similarity=0.090 Sum_probs=134.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHH
Q 044175 15 RACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVL 94 (537)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i 94 (537)
|.++.+....++..++........+.. .+++|.++.+.+++.+.+.+...++.+++|+++||+ ||||+++++.+++.+
T Consensus 3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~ 80 (393)
T PRK11195 3 KGFYAIMAAQFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLL 80 (393)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHH
Confidence 345667777777777655554444444 578999999999999999999999999999999995 999999999999999
Q ss_pred HHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHH
Q 044175 95 ALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLT 174 (537)
Q Consensus 95 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 174 (537)
+.+.+.... +. ++.|+++|++.+...|...+++.|.+|+++ |+++.++....
T Consensus 81 ~~~~~~~~~-------------------~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~~~~~~~ 132 (393)
T PRK11195 81 GCLLMLFGI-------------------HP---LLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKANGWMEGS 132 (393)
T ss_pred HHHHHHHHH-------------------HH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHH
Confidence 888776653 22 678999999999999999999999999777 99999999989
Q ss_pred HHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHH
Q 044175 175 TTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIG 209 (537)
Q Consensus 175 ~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~ 209 (537)
.++|.++||.++|++.+. .|+..+.+.+...+++
T Consensus 133 ~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~ 166 (393)
T PRK11195 133 TIAAILLGTVLGGALADP-HAEAALAVCALIYLLA 166 (393)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 999999999999998774 4776666555443333
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=191.26 Aligned_cols=178 Identities=11% Similarity=0.035 Sum_probs=158.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHH
Q 044175 13 GFRACGFIFVLSSLENMGFIANAI---SMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFG 89 (537)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~ 89 (537)
+.|--+.+++..++...+||-+.- ...+++.++.++|.+|.|.+.+.+.+.+.++-.+.|.++||. +.|+.+..++
T Consensus 23 y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~gL 101 (448)
T COG2271 23 YKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFGL 101 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHHH
Confidence 334447788888999999998764 455788999999999999999999999999999999999995 9999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHH
Q 044175 90 TLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFN 169 (537)
Q Consensus 90 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 169 (537)
++.++..+++++++ +...+.+..++.|..+|.-.|.....++.++++++ |++..+
T Consensus 102 ilsai~nil~Gfs~-------------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG~~~s 156 (448)
T COG2271 102 ILSAIVNILFGFSP-------------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RGTWWS 156 (448)
T ss_pred HHHHHHHHHHhhhh-------------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cCceEE
Confidence 99999999999985 67888888999999999999999999999999988 999999
Q ss_pred HHHHHHHHHHHHHHHHH--hhhcccccchHHHHHHHHHHHHHHHHHHhc
Q 044175 170 YFLLTTTLAAVIGVTAI--VYVSTEKAWWGGFLISSIVTFIGFIALVIG 216 (537)
Q Consensus 170 ~~~~~~~~g~~i~~~~~--~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~ 216 (537)
+++.+-|+|+++.|.+. +++..+.+||..|++++++.++..+..++.
T Consensus 157 iWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~ 205 (448)
T COG2271 157 IWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFL 205 (448)
T ss_pred EehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 889888899999999998766555444443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-20 Score=199.50 Aligned_cols=154 Identities=12% Similarity=0.118 Sum_probs=122.4
Q ss_pred cCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhc-cccCCCCCCCCCccCCchh
Q 044175 46 MHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYS-EKLHPPDCGKSSCVKGGIA 124 (537)
Q Consensus 46 l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~ 124 (537)
+|.+..+.+++.+.+.++..+++++.|+++||+ ||||+++++.++..++.+.++..... .....+ +....
T Consensus 50 ~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~--------~~~~~ 120 (479)
T PRK10077 50 ESAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISALGSAWPEFGFTSIGPD--------NTGYV 120 (479)
T ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhhcccccccccc--------chhHH
Confidence 488999999999999999999999999999995 99999999999998888777653100 000000 01235
Q ss_pred HHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhc--------ccccch
Q 044175 125 AYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVS--------TEKAWW 196 (537)
Q Consensus 125 ~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~--------~~~g~~ 196 (537)
..++++|+++|++.|...+...++++|++|+++ |+++++....+..+|..+++.+++.+. +.+|||
T Consensus 121 ~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr 194 (479)
T PRK10077 121 PEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWR 194 (479)
T ss_pred HHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChH
Confidence 678899999999999999999999999999887 899999988888999998887765442 356999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 044175 197 GGFLISSIVTFIGFIALV 214 (537)
Q Consensus 197 ~~f~i~~~~~~~~~~~~~ 214 (537)
+.|++.++..++..+..+
T Consensus 195 ~~f~~~~~~~~~~~~~~~ 212 (479)
T PRK10077 195 YMFASEAIPALLFLMLLY 212 (479)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999987766555444333
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.4e-20 Score=189.59 Aligned_cols=174 Identities=15% Similarity=0.135 Sum_probs=143.1
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHH
Q 044175 12 GGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTL 91 (537)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~ 91 (537)
+++|..+...+..++.....+.....++. +.+++|++..+.+++.+.+.++..++.+++|+++||+ ||||++..+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~~ 81 (394)
T PRK03699 4 NRIKLTWISFLSYALTGALVIVTGMVMGP-IAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFAL 81 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 46677777777767666665545455554 5678999999999999999999999999999999995 999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHH
Q 044175 92 EVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYF 171 (537)
Q Consensus 92 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 171 (537)
..++.+++.++. +...+++.|+++|++.|...+...+.+.|.+|+++ |++..+..
T Consensus 82 ~~i~~~l~~~~~-------------------~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~------r~~~~~~~ 136 (394)
T PRK03699 82 MILAVAGLMFSH-------------------SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ------RGSRLLFT 136 (394)
T ss_pred HHHHHHHHHHcc-------------------hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch------HHHHHHHH
Confidence 999988888763 67788999999999999999999999999998766 88888887
Q ss_pred HHHHHHHHHHHHHHHhhhc-ccccchHHHHHHHHHHHHHHHH
Q 044175 172 LLTTTLAAVIGVTAIVYVS-TEKAWWGGFLISSIVTFIGFIA 212 (537)
Q Consensus 172 ~~~~~~g~~i~~~~~~~l~-~~~g~~~~f~i~~~~~~~~~~~ 212 (537)
+....+|+.++|.+.+++. +..+||+.|.+.++..++..+.
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 137 DSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 7788889999998888765 4579999998766655444433
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.4e-20 Score=196.26 Aligned_cols=178 Identities=11% Similarity=0.020 Sum_probs=132.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----cCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHH
Q 044175 15 RACGFIFVLSSLENMGFIANAISMVLYFKNE-----MHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFG 89 (537)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-----l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~ 89 (537)
+.+.+..+..+.+.+....+....+. +..+ .+.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.
T Consensus 16 ~~~~~~~~~~~~~g~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~~~~ 93 (502)
T TIGR00887 16 RAIVIAGVGFFTDSYDLFCISLVTKM-LGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYGMEL 93 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHH
Confidence 34444444455554444333333333 3322 245566778999999999999999999999995 9999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHH
Q 044175 90 TLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFN 169 (537)
Q Consensus 90 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 169 (537)
++..++.++++.+..... ..+...++++|+++|++.|...+..+.+++|.+|+++ |+++.+
T Consensus 94 ~~~~v~~~~~~~~~~~~~-------------~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~------Rg~~~~ 154 (502)
T TIGR00887 94 IIMIIATVASGLSPGSSP-------------KSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW------RGAMMA 154 (502)
T ss_pred HHHHHHHHHHHHccCccc-------------chHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh------HHHHHH
Confidence 999999988877631000 0125789999999999999999999999999999888 999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc-----------------------cccchHHHHHHHHHHHHHHHHH
Q 044175 170 YFLLTTTLAAVIGVTAIVYVST-----------------------EKAWWGGFLISSIVTFIGFIAL 213 (537)
Q Consensus 170 ~~~~~~~~g~~i~~~~~~~l~~-----------------------~~g~~~~f~i~~~~~~~~~~~~ 213 (537)
+.+....+|..+++.++.++.. .++||+.|.+.++..++..+..
T Consensus 155 ~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~ 221 (502)
T TIGR00887 155 AVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFR 221 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHH
Confidence 9998889999888887764421 2479999987776555444443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.5e-21 Score=200.39 Aligned_cols=155 Identities=8% Similarity=-0.057 Sum_probs=127.2
Q ss_pred HHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCc
Q 044175 39 VLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSC 118 (537)
Q Consensus 39 ~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 118 (537)
.+.+.+++|++..+.+++.+.+.+++.++.+++|+++||+ ||||++.++.++..++.+..+.....
T Consensus 52 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~------------- 117 (467)
T PRK09556 52 QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASLGS------------- 117 (467)
T ss_pred hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHHhc-------------
Confidence 4567789999999999999999999999999999999995 99999999988888877766653100
Q ss_pred cCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcccc---cc
Q 044175 119 VKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVSTEK---AW 195 (537)
Q Consensus 119 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~---g~ 195 (537)
...+...+++.|+++|++.|...|...++++|++|+++ |+++++++..+.++|.++++.+..++.... +|
T Consensus 118 -~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~ 190 (467)
T PRK09556 118 -GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHV 190 (467)
T ss_pred -ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHHHHhhccCcc
Confidence 01367889999999999999999999999999999888 899999988888999999988887665542 58
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 044175 196 WGGFLISSIVTFIGFIALV 214 (537)
Q Consensus 196 ~~~f~i~~~~~~~~~~~~~ 214 (537)
+..|.+.++..++..+..+
T Consensus 191 ~~~f~~~g~~~~~~~i~~~ 209 (467)
T PRK09556 191 IGMFIFPSIIALIIGFIGL 209 (467)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 8888776665544433333
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-19 Score=186.46 Aligned_cols=170 Identities=9% Similarity=0.000 Sum_probs=140.1
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHH
Q 044175 12 GGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTL 91 (537)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~ 91 (537)
+.||.+....+.+++...+.+...++++.++ +++|.+..+.+++.+.+.++..++.++.|+++||+ ||||++..+..+
T Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~~~ 87 (402)
T TIGR00897 10 GIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGLLL 87 (402)
T ss_pred CCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHH
Confidence 5677888888888888888888888888888 56899999999999999999999999999999995 999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHH
Q 044175 92 EVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYF 171 (537)
Q Consensus 92 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 171 (537)
..++.+++...... ..+...+++.|+++|+|.+...+...+.+.|.+|+++ |+++.+..
T Consensus 88 ~~~~~~~~~~~~~~---------------~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~------~g~~~g~~ 146 (402)
T TIGR00897 88 WCVGHAAFIVFGLG---------------HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN------LSSAVGWF 146 (402)
T ss_pred HHHHHHHHHHHhcc---------------CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH------HHHHHHHH
Confidence 88887655321100 1256677889999999988887777888888888776 89999999
Q ss_pred HHHHHHHH-HHHHHHHhhhcccccchHHHHHHHH
Q 044175 172 LLTTTLAA-VIGVTAIVYVSTEKAWWGGFLISSI 204 (537)
Q Consensus 172 ~~~~~~g~-~i~~~~~~~l~~~~g~~~~f~i~~~ 204 (537)
..+.++|. .++|.+++++.+..||+..++....
T Consensus 147 ~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~ 180 (402)
T TIGR00897 147 WAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALA 180 (402)
T ss_pred HHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 98889996 5899999998888887655554433
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-19 Score=186.71 Aligned_cols=146 Identities=13% Similarity=0.098 Sum_probs=128.5
Q ss_pred hhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCC
Q 044175 42 FKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKG 121 (537)
Q Consensus 42 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 121 (537)
+.+++|.+.++.++..+.+.++..++.++.|+++||+ |||+++..+..++.++.+++..+.
T Consensus 42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~------------------ 102 (413)
T PRK15403 42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFTT------------------ 102 (413)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHcC------------------
Confidence 5678999999999999999999999999999999995 999999999999999998888763
Q ss_pred chhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHH
Q 044175 122 GIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVSTEKAWWGGFLI 201 (537)
Q Consensus 122 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i 201 (537)
+...++++|+++|++.+...+...+++.|.+++++ +++.+++.....++|..++|.+++++.+..|||+.|++
T Consensus 103 -~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~ 175 (413)
T PRK15403 103 -SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAI 175 (413)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 67889999999999998777777788899998777 78889998889999999999999999888899999998
Q ss_pred HHHHHHHHHHHH
Q 044175 202 SSIVTFIGFIAL 213 (537)
Q Consensus 202 ~~~~~~~~~~~~ 213 (537)
.++..++..+..
T Consensus 176 ~~~~~~i~~~~~ 187 (413)
T PRK15403 176 IAVMGLIAFVGL 187 (413)
T ss_pred HHHHHHHHHHHH
Confidence 777665555443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.2e-20 Score=197.77 Aligned_cols=147 Identities=18% Similarity=0.164 Sum_probs=126.7
Q ss_pred HHhhhhcCCc---hhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCC
Q 044175 40 LYFKNEMHFN---LAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKS 116 (537)
Q Consensus 40 ~yl~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 116 (537)
.-+.+++|++ ..+.+++.+++.++..++.++.|+++||+ |||+++.++.++..++.++.+++.
T Consensus 113 ~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~~------------- 178 (505)
T TIGR00898 113 STIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFSP------------- 178 (505)
T ss_pred ccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHcc-------------
Confidence 3456789998 89999999999999999999999999995 999999999999999988888763
Q ss_pred CccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcccccch
Q 044175 117 SCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVSTEKAWW 196 (537)
Q Consensus 117 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~ 196 (537)
++..+++.|++.|++.+...+...+++.|.+|+++ |++..++...+..+|.+++|.++..+.+ ||
T Consensus 179 ------~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr 243 (505)
T TIGR00898 179 ------NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFIPD---WR 243 (505)
T ss_pred ------cHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHhhH---HH
Confidence 67889999999999999999999999999999877 8888888888888999999988776543 99
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 044175 197 GGFLISSIVTFIGFIALVI 215 (537)
Q Consensus 197 ~~f~i~~~~~~~~~~~~~~ 215 (537)
+.|++.++..++..+..++
T Consensus 244 ~~~~~~~i~~~~~~~~~~~ 262 (505)
T TIGR00898 244 WLQLAVSLPTFLFFLLSWF 262 (505)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9998877665555544443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.2e-20 Score=195.46 Aligned_cols=145 Identities=16% Similarity=0.219 Sum_probs=123.5
Q ss_pred CchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHH
Q 044175 48 FNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYF 127 (537)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (537)
.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+++..... ..+.+.+
T Consensus 68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~ 130 (481)
T TIGR00879 68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAAF----------------ALSVEML 130 (481)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhcc----------------ccchHHH
Confidence 3389999999999999999999999999995 9999999999999999988866531 1244588
Q ss_pred HHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHH---hhhcccccchHHHHHHHH
Q 044175 128 YASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAI---VYVSTEKAWWGGFLISSI 204 (537)
Q Consensus 128 ~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~---~~l~~~~g~~~~f~i~~~ 204 (537)
+++|+++|+|.|...+...++++|.+|+++ |++++++.+.+.++|..+++.++ +...+..+||+.|++.++
T Consensus 131 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~ 204 (481)
T TIGR00879 131 IVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLI 204 (481)
T ss_pred HHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHH
Confidence 999999999999999999999999999887 89999999999999999999998 766677899999998665
Q ss_pred HHHHHHHHHHh
Q 044175 205 VTFIGFIALVI 215 (537)
Q Consensus 205 ~~~~~~~~~~~ 215 (537)
..++.++..++
T Consensus 205 ~~~~~~~~~~~ 215 (481)
T TIGR00879 205 PAGLLFLGLFF 215 (481)
T ss_pred HHHHHHHHHhc
Confidence 55444444333
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.9e-20 Score=194.01 Aligned_cols=150 Identities=9% Similarity=0.059 Sum_probs=124.8
Q ss_pred HHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCcc
Q 044175 40 LYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCV 119 (537)
Q Consensus 40 ~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 119 (537)
..+.+++|++.++.+++.+.+.+...++.++.|+++||+ |||++++.+.++..++.++++++.
T Consensus 43 ~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~---------------- 105 (455)
T TIGR00892 43 KELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFSS---------------- 105 (455)
T ss_pred HHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHhh----------------
Confidence 445678999999999999999999999999999999995 999999999999999888887764
Q ss_pred CCchhHHHHH-HHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcccccchHH
Q 044175 120 KGGIAAYFYA-SLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVSTEKAWWGG 198 (537)
Q Consensus 120 ~~~~~~~~~~-~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~ 198 (537)
+...+++ .|++.|++.|...+...+++.|.++ ++ |+++.++.+.+.++|..++|.+++++.+.+|||+.
T Consensus 106 ---~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~ 175 (455)
T TIGR00892 106 ---NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGS 175 (455)
T ss_pred ---hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHH
Confidence 4455544 5688999999876666778888885 44 89999999999999999999999999888999999
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 044175 199 FLISSIVTFIGFIALVIG 216 (537)
Q Consensus 199 f~i~~~~~~~~~~~~~~~ 216 (537)
|++.+++.++..+..++.
T Consensus 176 f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 176 FLILGGLLLHCCVCGALM 193 (455)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 998877665554444333
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.2e-20 Score=192.61 Aligned_cols=175 Identities=13% Similarity=0.075 Sum_probs=131.1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHH
Q 044175 13 GFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLE 92 (537)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~ 92 (537)
+++.+.......++.....+.+.+. .+++.+++|++..+.+++.+.+.+++.++.+++|+++||+ |||+++..+.+++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~ 111 (476)
T PLN00028 34 HMRAFHLSWISFFTCFVSTFAAAPL-LPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLMLT 111 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHH
Confidence 3344444444455555555544433 3466789999999999999999999999999999999995 9999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHH
Q 044175 93 VLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFL 172 (537)
Q Consensus 93 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 172 (537)
.++.++++++. +...+++.|+++|++.+... ....+++|++|+++ |+++++..+
T Consensus 112 ~~~~~~~~~~~-------------------s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~------rg~a~g~~~ 165 (476)
T PLN00028 112 APAVFCMSLVS-------------------SATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKI------VGTANGIAA 165 (476)
T ss_pred HHHHHHHHHhc-------------------CHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhh------eeHHHHHHH
Confidence 99888877763 56778889999999988654 34567899999877 899999887
Q ss_pred HHHHHHHHHHHHHHhhhc----c-----cccchHHHHHHHHHHHHHHHHHHh
Q 044175 173 LTTTLAAVIGVTAIVYVS----T-----EKAWWGGFLISSIVTFIGFIALVI 215 (537)
Q Consensus 173 ~~~~~g~~i~~~~~~~l~----~-----~~g~~~~f~i~~~~~~~~~~~~~~ 215 (537)
...++|+.+++.+.+.+. + ..|||+.|++.+++.++..+..++
T Consensus 166 ~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~ 217 (476)
T PLN00028 166 GWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT 217 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 777777777766554432 1 258999999877766555444443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-19 Score=187.45 Aligned_cols=173 Identities=14% Similarity=0.026 Sum_probs=125.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHH-HHHHH-----HHHHHhhHhHHHhhhccchhHHHH
Q 044175 13 GFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTL-TNLMG-----STFLLCLVGGFISDTFLSRFATCL 86 (537)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~-~~~~~-----~~~~~~~~~G~laD~~~Gr~~~~~ 86 (537)
+++.....++..+++.+....+. ...+.+.++++.++.+.+.+. +.... ...+++++.|+++||+ ||||++.
T Consensus 13 ~~~~~~~~~~~~~~~~~d~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~ 90 (434)
T PRK15075 13 KARAILRVTSGNFLEMFDFFLFG-FYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKGLI 90 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHHHH
Confidence 44555666666677766665444 444577788998887765443 22222 2236788999999995 9999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhh
Q 044175 87 IFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALAS 166 (537)
Q Consensus 87 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 166 (537)
.+.++..++.++++++++...+. ......++++|+++|++.|...+....+++|++|+++ |++
T Consensus 91 ~~~~~~~~~~~l~~~~~~~~~~~-----------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~ 153 (434)
T PRK15075 91 VTLSIMASGTLLIAFVPGYATIG-----------LAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR------KGF 153 (434)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHH-----------HHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc------chH
Confidence 99999999999998874110000 0001257889999999999999999999999999888 899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh--------cccccchHHHHHHHH
Q 044175 167 YFNYFLLTTTLAAVIGVTAIVYV--------STEKAWWGGFLISSI 204 (537)
Q Consensus 167 ~~~~~~~~~~~g~~i~~~~~~~l--------~~~~g~~~~f~i~~~ 204 (537)
..++.....++|..+++.+++.+ .+.+|||++|++..+
T Consensus 154 ~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 154 YTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 99988777777777777766654 246799999987543
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-19 Score=183.12 Aligned_cols=368 Identities=12% Similarity=0.017 Sum_probs=222.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHH-HH
Q 044175 16 ACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLE-VL 94 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~-~i 94 (537)
..+.+.+..++...++....++++.|++ ++|++..+.+++.+.+.+...++.++.|.++||+ ||++......... .+
T Consensus 5 ~~~~l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l 82 (382)
T TIGR00902 5 PFRWLALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAI 82 (382)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHH
Confidence 3344555566666666666788888884 6899999999999999999999999999999995 9854432222111 11
Q ss_pred HHH-HHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHH
Q 044175 95 ALV-MITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLL 173 (537)
Q Consensus 95 ~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 173 (537)
..+ +...+ ++.+.+++.|++++.+.+...|...++..|. +++ |++.++....
T Consensus 83 ~~~~~~~~~-------------------~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~------~~~~~g~~~~ 135 (382)
T TIGR00902 83 FAAAFSAGA-------------------HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQ------FGLDYGKVRL 135 (382)
T ss_pred HHHHHHHhh-------------------hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHH------cCCCccHHHH
Confidence 111 12222 3678888999999999888888888876543 222 6788888888
Q ss_pred HHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHhccccccccCCCCCchhhHHHHHHHHHHhccCCCCCChh
Q 044175 174 TTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQVVVVAIKNRKLSLPENPE 253 (537)
Q Consensus 174 ~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 253 (537)
..++|.+++|.+++++.+.+||+..|.+......+..+ .+..+++. +|++++.+ .
T Consensus 136 ~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~-------------------~-- 190 (382)
T TIGR00902 136 IGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFMLI-GFLIKPTI---PPKDAIPE-------------------D-- 190 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH-HHHcCCCC---CCCccccc-------------------c--
Confidence 99999999999999999999999998876544322222 22222210 11000000 0
Q ss_pred hhhhhhhhhccCCccccCCCCchhHhhhhccCCCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHhhhhcchhh
Q 044175 254 ELYEINEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVKILTRMMPILASTILMNTCLAQLQTFS 333 (537)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 333 (537)
+. . +..++. ++-..|++.... ....+.+.......+..
T Consensus 191 --------------~~-~--~~~~~~----------------------~~l~~~~~~~~l---~~~~l~~~~~~~~~~~~ 228 (382)
T TIGR00902 191 --------------ES-Q--GDSAFI----------------------ALLKNPMNLRFL---AAVCLIQGAHAAYYGFS 228 (382)
T ss_pred --------------cc-c--cchhHH----------------------HHHcChHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 00 0 000000 000011121111 11122222222222211
Q ss_pred heeccccCCCCCccccCCCcccccchHhHHHHhhhhcchhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 044175 334 VTQGAYMDPQLGSIKVPTPSIPVIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVEVQ 413 (537)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~ 413 (537)
..+....+.+ ....+....+..+..++..++.++ +.+|+ +..+.+.++.++.++.....++.
T Consensus 229 ~~~l~~~g~s----~~~~g~l~~~~~~~~i~~~~~~~~----l~~r~-------g~~~~l~~~~~~~~~~~~~~~~~--- 290 (382)
T TIGR00902 229 AIYWQAAGIS----ASATGLLWGIGVLAEIIIFAFSNK----LFQNC-------SARDLLLISAIACVGRWAIIGAI--- 290 (382)
T ss_pred HHHHHHCCCC----HhHHHHHHHHHHHHHHHHHHHhHH----HHhhC-------CHHHHHHHHHHHHHHHHHHHHhH---
Confidence 1111111111 111112222233333333333333 33332 55666778888888887766653
Q ss_pred HhhhhccCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchhHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhc
Q 044175 414 RRNAFNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTF-LSLSFGNFLSSVFVDIINAVTK 492 (537)
Q Consensus 414 ~~~~~~~~g~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~~g~~~~~~l~~~i~~~~~ 492 (537)
.+.+.++...++.++..+...+....++.+. |++.|++++++++ ...++|..+++.+.+.+.+..
T Consensus 291 ------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~- 356 (382)
T TIGR00902 291 ------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL- 356 (382)
T ss_pred ------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 2445566678999999999999999999988 9999999999987 467799999999998776322
Q ss_pred cCCCCCCCCccCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 044175 493 RITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLY 530 (537)
Q Consensus 493 ~~~~~~~~w~~~~~l~~~~~~~~f~~~~~l~~~~~v~~ 530 (537)
+. ..|+..+++++++.++.
T Consensus 357 ------------------g~-~~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 357 ------------------GA-GTFVFMAIIAAAAFFLI 375 (382)
T ss_pred ------------------cH-HHHHHHHHHHHHHHHHH
Confidence 11 34677777777765543
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-20 Score=194.99 Aligned_cols=369 Identities=15% Similarity=0.178 Sum_probs=241.1
Q ss_pred hcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchh
Q 044175 45 EMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIA 124 (537)
Q Consensus 45 ~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (537)
+++++..+.+++.+.+..++.++++++|+++||+ |-|+++.++.++.++++++...+.. .+.
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~-----------------~~~ 128 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAAS-----------------IGF 128 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHH-----------------hcc
Confidence 6889999999999999999999999999999995 9999999999999999999998863 244
Q ss_pred HHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccc-ccchHHHHHHH
Q 044175 125 AYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVSTE-KAWWGGFLISS 203 (537)
Q Consensus 125 ~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~-~g~~~~f~i~~ 203 (537)
..+++.|++||++.|...|+...+.+.+.|++| |++..+..+....+|.+++-.++|++.+. .||+.+|++.+
T Consensus 129 ~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g 202 (466)
T KOG2532|consen 129 YLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFG 202 (466)
T ss_pred hhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHH
Confidence 578999999999999999999999999999888 99999999988899999999999999888 99999999999
Q ss_pred HHHHHHHHHHHhccccccccCCCCCchhhHHHHHHHHHHhccCCCCCChhhhhhhhhhhccCCccccCCCCchhHhhhhc
Q 044175 204 IVTFIGFIALVIGKPFYRNQQPGESPLVRVSQVVVVAIKNRKLSLPENPEELYEINEKERVGTEERIPHTNQFRCLDKAA 283 (537)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (537)
++.++..++++....+ +|++++.. +.+|+..+ ++.+
T Consensus 203 ~~g~i~~~~w~~~~~d----~P~~h~~i-------------------s~~El~~I---------------------~~~k 238 (466)
T KOG2532|consen 203 IVGLIWFILWFLFYSD----SPSKHPNI-------------------SEKELKYI---------------------EKGK 238 (466)
T ss_pred HHHHHHHHHHHHHhcC----CcccCCCC-------------------CHHHHHHH---------------------Hhcc
Confidence 9888888877765443 23222211 11111111 0000
Q ss_pred cCCCCC-CCCCCcccccchhHHHHHHHHhHHHHHH-------HHHHHHHhhhhcchhhheeccccCCCCCccccCCCccc
Q 044175 284 IVPKDS-TEAAPWRVCTLTQVEEVKILTRMMPILA-------STILMNTCLAQLQTFSVTQGAYMDPQLGSIKVPTPSIP 355 (537)
Q Consensus 284 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (537)
.....+ ..+-+|+ .+++-.+++. ....+++..++. +.|..+..+.+. ..++.+.
T Consensus 239 ~~~~~~~~~~vP~~-----------~i~ts~~vwai~~~~f~~~~~~~~l~~y~-PtY~~~VL~f~v------~~~G~~s 300 (466)
T KOG2532|consen 239 SEAHVKKKPPVPYK-----------AILTSPPVWAIWISAFGGNWGFYLLLTYL-PTYLKEVLGFDV------RETGFLS 300 (466)
T ss_pred cccccCCCCCCCHH-----------HHHcCHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHhCCCh------hhhhHHH
Confidence 000000 0113342 2222222221 122222222222 333333333442 2445666
Q ss_pred ccchHhHHHHhhhhcchhccccccccCCCCCCCchHHH--HHHHHHHHHHHHHHHHHHHHHhhhhccCCCccchHHHHHH
Q 044175 356 VIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRV--GVGLVLSAVSMTIAGFVEVQRRNAFNQMPPKQISLFWLSF 433 (537)
Q Consensus 356 ~~~~~~~ii~~~~~~~~~~~~~~r~~~~~~~~~~~~~i--~~g~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~ 433 (537)
+++.+...+...+...+.|++.+| . .. ....+++ .++....++.++..++... .+. ++.+
T Consensus 301 alP~l~~~~~k~~~g~lsD~l~~~-~-ls--~t~~rkifn~i~~~~~ai~l~~l~~~~~-------------~~~-~~a~ 362 (466)
T KOG2532|consen 301 ALPFLAMAIVKFVAGQLSDRLTFR-I-LS--ETTVRKIFNTIAFGGPAVFLLVLAFTSD-------------EHR-LLAV 362 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-c-Cc--hHhHHHHHHhHHHHHHHHHHHeeeecCC-------------Ccc-hHHH
Confidence 666666666666666666655444 1 11 1233333 4455555555555555311 111 1222
Q ss_pred HHHHHHHHHHHHhhhhHHHhhhc-cCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCccCCCCCCchh
Q 044175 434 QYCIFGIADMFTLVGLLEFFYKE-APAGMRTLSTSFTFLSLSFGNFLSSVFVDIINAVTKRITPSKQGWLHGTDINKNNA 512 (537)
Q Consensus 434 ~~~l~g~g~~~~~~~~~~~~~~~-~P~~~rg~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~ 512 (537)
....++.+.......+..-.... + +++-+..+|+.+....+..+++|.+++.+.. . + +...+
T Consensus 363 ~~l~~~~~~~g~~~~Gf~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~-~--------------~-t~~eW 425 (466)
T KOG2532|consen 363 ILLTIAIGLSGFNISGFYKNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLVGIIVT-D--------------N-TREEW 425 (466)
T ss_pred HHHHHHHHHcccchhhhHhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHheeeEeC-C--------------C-CHHHH
Confidence 22222233333333333333333 4 4558899999999999999999999886552 1 1 23567
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 044175 513 NLFYWFLAILSVLNFVLYLYAA 534 (537)
Q Consensus 513 ~~~f~~~~~l~~~~~v~~~~~~ 534 (537)
...|++.+++.++..++|.++.
T Consensus 426 ~~VF~i~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 426 RIVFLIAAGILIVGNIIFLFFG 447 (466)
T ss_pred HHHHHHHHHHHHHhchheeEee
Confidence 7889999999999988887764
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.9e-19 Score=183.22 Aligned_cols=170 Identities=11% Similarity=0.089 Sum_probs=140.1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHH
Q 044175 13 GFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLE 92 (537)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~ 92 (537)
.+|..+.......+..+......+.++ ++.+++|.++.+.+++.+.+.++..++.++.|+++||+ ||||++..+.++.
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~-~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~~ 83 (394)
T PRK11652 6 NVNLLFMLVLLVAVGQMAQTIYVPAIA-DMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSIF 83 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHH
Confidence 455666666666666666654444444 45678999999999999999999999999999999995 9999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHH
Q 044175 93 VLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFL 172 (537)
Q Consensus 93 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 172 (537)
.++.+++.... +...+++.|++.|++.+...+....+..|.+++++ ++++.+...
T Consensus 84 ~~~~~~~~~~~-------------------~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 138 (394)
T PRK11652 84 ILGTLVALFAH-------------------SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------LRHANSLLN 138 (394)
T ss_pred HHHHHHHHHHc-------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------HHHHHHHHH
Confidence 99888877653 67888999999999998887877788888887655 778888888
Q ss_pred HHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHH
Q 044175 173 LTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIG 209 (537)
Q Consensus 173 ~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~ 209 (537)
.+..++..++|.+++++.+..||+..|++.++..++.
T Consensus 139 ~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~ 175 (394)
T PRK11652 139 MGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGV 175 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 8889999999999999988889999998876654433
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-19 Score=188.53 Aligned_cols=392 Identities=9% Similarity=0.017 Sum_probs=219.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHH
Q 044175 14 FRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEV 93 (537)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~ 93 (537)
.+.+|.+.+..++..++++...++++.|+++++|+++.+.+.+.+.+.+...+++++.|+++||+ ||||++.++.....
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~ 87 (420)
T PRK09528 9 NPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLL 87 (420)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHH
Confidence 46778888888888898888999999999999999999999999999999999999999999995 99999988776665
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHH
Q 044175 94 LALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLL 173 (537)
Q Consensus 94 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 173 (537)
++..........+. -......+..+.++..|...+...+.+.++.++.. ++++..++....
T Consensus 88 ~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~g~~~~ 148 (420)
T PRK09528 88 VLFGPFFIYVFAPL---------------LQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVS----RRSGFEYGRARM 148 (420)
T ss_pred HHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHH----hhccccchhhHH
Confidence 55432221100000 00011122222333333333333333333322111 125566777777
Q ss_pred HHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHhccccccccCCCCCchhhHHHHHHHHHHhccCCCCCChh
Q 044175 174 TTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQVVVVAIKNRKLSLPENPE 253 (537)
Q Consensus 174 ~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 253 (537)
..++|..++|.+++++.+ .+|+..|++.++..++..+..+..+++.++++. .++ .++.
T Consensus 149 ~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------------------~~~~-- 206 (420)
T PRK09528 149 WGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPSTAK-VAN------------------ALGA-- 206 (420)
T ss_pred hhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccchhh-hcc------------------chhc--
Confidence 789999999999998876 489999988776665555554443322111000 000 0000
Q ss_pred hhhhhhhhhccCCccccCCCCchhHhhhhccCCCCCCCCCCcccccchhHHHHHHHHh-HHHHHHHHHHHHHhhhhcchh
Q 044175 254 ELYEINEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVKILTR-MMPILASTILMNTCLAQLQTF 332 (537)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~ 332 (537)
++ .... ..+..... . .+.+.. .+........+.....+.+..
T Consensus 207 --------------~~--~~~~--~~~~~~~l------------------~-~~~~~~l~l~~~~~~~~~~~~~~~~~~~ 249 (420)
T PRK09528 207 --------------NA--SAVS--LKDALALL------------------K-LPKFWFLVLYVIGVACFYDVFDQQFPNF 249 (420)
T ss_pred --------------cc--cccc--HHHHHHHc------------------c-CCCeEeehHHHHHHHHHHHHHHHHHHHH
Confidence 00 0000 00000000 0 001100 111111111111211222222
Q ss_pred hheeccccCCCCCccccCCCcccccchHhHHHHhhhhcchhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 044175 333 SVTQGAYMDPQLGSIKVPTPSIPVIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVEV 412 (537)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~ 412 (537)
...... +...+ ....+....+..+...+..++..++.+++.+ .+.+..+.++.+++....++.
T Consensus 250 ~~~~~~--~~~~~--~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~-----------~~~~~~~~~l~~~~~~l~~~~-- 312 (420)
T PRK09528 250 FASFFA--TPEQG--TRVFGYLNSFQVFLEALIMFFAPFIINRIGA-----------KNALLLAGTIMAVRIIGSGFA-- 312 (420)
T ss_pred HHHHHh--ccCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-----------chhhHHHHHHHHHHHHHHHhc--
Confidence 111110 11100 0011222333334444555555554443322 233556666666666655542
Q ss_pred HHhhhhccCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchhHHHHHH-HHHHHHHHHHHHHHHHHHhhhhh
Q 044175 413 QRRNAFNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSF-TFLSLSFGNFLSSVFVDIINAVT 491 (537)
Q Consensus 413 ~~~~~~~~~g~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~~g~~~~~~l~~~i~~~~ 491 (537)
.+.++++...++.+++.....+...+++.+..|++.+++..+. +++...+|.++++.+.+.+.+..
T Consensus 313 -------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~ 379 (420)
T PRK09528 313 -------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI 379 (420)
T ss_pred -------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2334555567777887777778888999999999999988765 67778899999999888766322
Q ss_pred ccCCCCCCCCccCCCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 044175 492 KRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYLYA 533 (537)
Q Consensus 492 ~~~~~~~~~w~~~~~l~~~~~~~~f~~~~~l~~~~~v~~~~~ 533 (537)
++...|...+++.++..++.+..
T Consensus 380 -------------------G~~~~f~~~~~~~~i~~~~~~~~ 402 (420)
T PRK09528 380 -------------------GFQGTYLILGGIVLLFTLISVFT 402 (420)
T ss_pred -------------------CchHHHHHHHHHHHHHHHHHHHH
Confidence 24455777777776666555444
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-20 Score=189.63 Aligned_cols=152 Identities=11% Similarity=0.056 Sum_probs=131.9
Q ss_pred HHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCC
Q 044175 37 SMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKS 116 (537)
Q Consensus 37 ~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 116 (537)
...+++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+++..+.
T Consensus 16 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~------------- 81 (379)
T TIGR00881 16 LAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFST------------- 81 (379)
T ss_pred hhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHhh-------------
Confidence 344577889999999999999999999999999999999995 999999999999999998888774
Q ss_pred CccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHH-HHHhhhcccccc
Q 044175 117 SCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGV-TAIVYVSTEKAW 195 (537)
Q Consensus 117 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~-~~~~~l~~~~g~ 195 (537)
+.+.+++.|++.|++.+...+...+++.|.+|+++ |++.+++...+.++|..++| .+++.+.+..+|
T Consensus 82 ------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 149 (379)
T TIGR00881 82 ------SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSW 149 (379)
T ss_pred ------hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHHHHHhcCCc
Confidence 67889999999999999999999999999999877 88999998889999999999 577777777899
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 044175 196 WGGFLISSIVTFIGFIALV 214 (537)
Q Consensus 196 ~~~f~i~~~~~~~~~~~~~ 214 (537)
+..|++.+++.++..+..+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~ 168 (379)
T TIGR00881 150 HWVFIVPGIIAIIVSLICF 168 (379)
T ss_pred hhHHHHHHHHHHHHHHHHh
Confidence 9999887765554444333
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-19 Score=191.96 Aligned_cols=167 Identities=13% Similarity=0.166 Sum_probs=143.1
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHH
Q 044175 12 GGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTL 91 (537)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~ 91 (537)
.+|+.+..+.+..++..+.+..... ..+.+.+++|+++.+.+++.+.+.++..++.++.|+++||+ |||+++..+.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~ 94 (496)
T PRK03893 17 AQWKAFSAAWLGYLLDGFDFVLITL-VLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIVL 94 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHH
Confidence 3455666666666776666655544 44566788999999999999999999999999999999995 999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHH
Q 044175 92 EVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYF 171 (537)
Q Consensus 92 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 171 (537)
..++.+++.++. +...+++.|++.|++.+...+...+++.|.+|+++ |++.++..
T Consensus 95 ~~~~~~~~~~~~-------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~ 149 (496)
T PRK03893 95 FSVGTLACGFAP-------------------GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL------RNKASGFL 149 (496)
T ss_pred HHHHHHHHHHHh-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHH
Confidence 999998888763 67888999999999999999999999999999766 88999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccccchHHHHHHHHH
Q 044175 172 LLTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIV 205 (537)
Q Consensus 172 ~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~ 205 (537)
....++|..++|.+++++.+.++||+.|.+.++.
T Consensus 150 ~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~ 183 (496)
T PRK03893 150 ISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILP 183 (496)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 9899999999999999999989999999875543
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.1e-20 Score=190.56 Aligned_cols=155 Identities=10% Similarity=0.055 Sum_probs=126.3
Q ss_pred HHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCC
Q 044175 37 SMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKS 116 (537)
Q Consensus 37 ~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 116 (537)
...+++++ +|+++++.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.+++......
T Consensus 48 ~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~----------- 114 (438)
T TIGR00712 48 LAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAVMLLMGFVPWA----------- 114 (438)
T ss_pred hhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHHHHHHhccccc-----------
Confidence 34456665 599999999999999999999999999999995 99999999999988888876654210
Q ss_pred CccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhh-hcccccc
Q 044175 117 SCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVY-VSTEKAW 195 (537)
Q Consensus 117 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~-l~~~~g~ 195 (537)
..+...+.+.|++.|++.|...+.....+.|.+|+++ |++++++.+...++|+.+++.+.+. +....+|
T Consensus 115 ----~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w 184 (438)
T TIGR00712 115 ----TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDW 184 (438)
T ss_pred ----cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhh
Confidence 1245667788999999999999988999999999888 8999999998999999988877665 4445689
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 044175 196 WGGFLISSIVTFIGFIALV 214 (537)
Q Consensus 196 ~~~f~i~~~~~~~~~~~~~ 214 (537)
|..|++.++..++..+..+
T Consensus 185 ~~~f~~~~~~~~i~~~~~~ 203 (438)
T TIGR00712 185 HAALYFPAICAIIVALFAF 203 (438)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999987776655444333
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.8e-19 Score=180.70 Aligned_cols=168 Identities=16% Similarity=0.186 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--hhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHH
Q 044175 21 FVLSSLENMGFIANAISMVLY--FKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVM 98 (537)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~y--l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l 98 (537)
+.+......++++.....|.+ +++++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~ 87 (401)
T PRK11043 9 VYLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLG 87 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHH
Confidence 333333444444444444443 6788999999999999999999999999999999995 9999999999998888888
Q ss_pred HHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHH
Q 044175 99 ITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLA 178 (537)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 178 (537)
+..+. +...+++.|+++|++.+...+...+++.|.+++++ +.+.++......++|
T Consensus 88 ~~~~~-------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 142 (401)
T PRK11043 88 MLWVE-------------------SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALS 142 (401)
T ss_pred HHHhc-------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHH
Confidence 77663 67788899999999988888888888999998766 677788877778899
Q ss_pred HHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHH
Q 044175 179 AVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALV 214 (537)
Q Consensus 179 ~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~ 214 (537)
..++|.+++++.+..+|+..|++..+..++..+..+
T Consensus 143 ~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 178 (401)
T PRK11043 143 PALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTL 178 (401)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999889999999887766555544443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.4e-19 Score=182.31 Aligned_cols=179 Identities=9% Similarity=-0.043 Sum_probs=133.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHH
Q 044175 15 RACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVL 94 (537)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i 94 (537)
|.+|.+....++...++....++++.|+++++|+++.+.+++.+.+.+...++.++.|+++||+ ||||.+..+....++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~ 80 (396)
T TIGR00882 2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLV 80 (396)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 4577888888999999899999999999999999999999999999999999999999999995 999999988776665
Q ss_pred HHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHH
Q 044175 95 ALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLT 174 (537)
Q Consensus 95 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 174 (537)
+..........+... ......+.+.+++.|++.+...+....+..|..+ + ++..++.....
T Consensus 81 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~------~~~~~g~~~~~ 141 (396)
T TIGR00882 81 LFAPFFIYVFGPLLQ-----------SNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--N------SNFEYGKARMF 141 (396)
T ss_pred HHHHHHHHHhhhHHH-----------HHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--h------cccccchhhhh
Confidence 443322110000000 0022345667888888888888888777666422 1 23455666667
Q ss_pred HHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHH
Q 044175 175 TTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALV 214 (537)
Q Consensus 175 ~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~ 214 (537)
.++|.+++|.+++.+.+ .+|+..|++.+++.++..+..+
T Consensus 142 ~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~ 180 (396)
T TIGR00882 142 GCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLM 180 (396)
T ss_pred cccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHH
Confidence 78999999999998765 5999999887766655544443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.3e-19 Score=181.67 Aligned_cols=153 Identities=14% Similarity=0.135 Sum_probs=133.4
Q ss_pred HHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 044175 34 NAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDC 113 (537)
Q Consensus 34 ~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 113 (537)
..+.++.+. +++|+++.+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++..++....
T Consensus 10 ~~p~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~~---------- 77 (377)
T PRK11102 10 YLPALPVIA-ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALAQ---------- 77 (377)
T ss_pred HhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHHc----------
Confidence 445666665 57999999999999999999999999999999995 999999999999999998888763
Q ss_pred CCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 044175 114 GKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVSTEK 193 (537)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~ 193 (537)
+...+++.|+++|++.+...+...+++.|.+|+++ |++.+++.+...++|..++|.+++++.+..
T Consensus 78 ---------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 142 (377)
T PRK11102 78 ---------TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPIIGGWLLVWF 142 (377)
T ss_pred ---------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 66788899999999999999999999999998777 899999999999999999999999998888
Q ss_pred cchHHHHHHHHHHHHHHHHH
Q 044175 194 AWWGGFLISSIVTFIGFIAL 213 (537)
Q Consensus 194 g~~~~f~i~~~~~~~~~~~~ 213 (537)
+|++.|++.++...+..+..
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~ 162 (377)
T PRK11102 143 SWHAIFWVLALAAILAAALV 162 (377)
T ss_pred ChHHHHHHHHHHHHHHHHHH
Confidence 99999988776655544443
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.4e-21 Score=187.91 Aligned_cols=180 Identities=11% Similarity=0.057 Sum_probs=160.7
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHH
Q 044175 12 GGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTL 91 (537)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~ 91 (537)
..++.+..++++++++++.-|.+-... .=.++.+|.++++.|++.+.+.+...++.|+.|+|+||+ .||+++.+|..+
T Consensus 30 ~~~~~l~il~~vnlmny~Dr~~iagv~-~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~i 107 (493)
T KOG1330|consen 30 SPTLTLVILCLVNLMNYADRYTIAGVL-KEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIFI 107 (493)
T ss_pred cchHHHHHHHHHHHHHHhhhhhhhhhh-HHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHHH
Confidence 345568889999999999999776633 345778999999999999999999999999999999996 999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHH
Q 044175 92 EVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYF 171 (537)
Q Consensus 92 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 171 (537)
+.++.+..+++. .++++.+.|.+.|+|.+...|..+++++|.||+.+ |++.++++
T Consensus 108 W~~Av~~~~fs~-------------------~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------Rs~~~~if 162 (493)
T KOG1330|consen 108 WTLAVFASGFSN-------------------HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------RSRVLGIF 162 (493)
T ss_pred HHHHHHHHHHHH-------------------HHHHHHHHHHHhccchhhhcccchhHhhhcCcchh------hhHHHHHh
Confidence 999999999885 78999999999999999999999999999999888 99999999
Q ss_pred HHHHHHHHHHHHHHHhhhccccc-chHHHHHHHHHHHHHHHHHHhccc
Q 044175 172 LLTTTLAAVIGVTAIVYVSTEKA-WWGGFLISSIVTFIGFIALVIGKP 218 (537)
Q Consensus 172 ~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~~~~~ 218 (537)
|+++++|..+|.++++++.+..+ ||++|...+++.++..++.++..+
T Consensus 163 y~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~ 210 (493)
T KOG1330|consen 163 YFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVR 210 (493)
T ss_pred hhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhcc
Confidence 99999999999999999988776 999999988887766666555433
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-18 Score=202.10 Aligned_cols=156 Identities=15% Similarity=0.081 Sum_probs=126.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchh--hHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHH
Q 044175 14 FRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLA--GASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTL 91 (537)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~ 91 (537)
.+.+..++...++..++..+....+..++...++.+.. ..+++.+++.++..++++++|+++||+ |||++++++.++
T Consensus 8 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~ 86 (1146)
T PRK08633 8 IIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLF 86 (1146)
T ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHH
Confidence 34556666677777776666666666677666666543 468889999999999999999999995 999999999887
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHH
Q 044175 92 EVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYF 171 (537)
Q Consensus 92 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 171 (537)
.+++.++..++.. ..+...+++.|+++|++.+...+...++++|.+|+++ |++++++.
T Consensus 87 ~~~~~~~~~~~~~----------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~ 144 (1146)
T PRK08633 87 EVGLTLLIVLAYY----------------LGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSRANGLL 144 (1146)
T ss_pred HHHHHHHHHHHHH----------------HccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chhhhhHH
Confidence 7666655544321 1357889999999999999999999999999999887 99999999
Q ss_pred HHHHHHHHHHHHHHHhhhccc
Q 044175 172 LLTTTLAAVIGVTAIVYVSTE 192 (537)
Q Consensus 172 ~~~~~~g~~i~~~~~~~l~~~ 192 (537)
..+.++|.++++.+++++...
T Consensus 145 ~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 145 EAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999988765
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.4e-18 Score=178.19 Aligned_cols=153 Identities=16% Similarity=0.029 Sum_probs=122.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHH
Q 044175 13 GFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLE 92 (537)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~ 92 (537)
....+..+.++-+...+.........|. +++++|.++.+.+++.+.+.++..++.++.|+++||+ ||||++..+..++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~-i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~ 101 (438)
T PRK10133 24 YIIPFALLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLY 101 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHH
Confidence 4445566666666667776555555554 5899999999999999999999999999999999995 9999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHH
Q 044175 93 VLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFL 172 (537)
Q Consensus 93 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 172 (537)
+++.+++..... .++...++++|+++|+|.|...+..++++.|..++++ |...++...
T Consensus 102 ~~~~~l~~~~~~----------------a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------~~~~~s~~~ 159 (438)
T PRK10133 102 ALGAALFWPAAE----------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQ 159 (438)
T ss_pred HHHHHHHHHHHh----------------cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------HHHHHHHHH
Confidence 999987642210 1367889999999999999999999999998755444 444577777
Q ss_pred HHHHHHHHHHHHHHhhh
Q 044175 173 LTTTLAAVIGVTAIVYV 189 (537)
Q Consensus 173 ~~~~~g~~i~~~~~~~l 189 (537)
....+|..++|.+++.+
T Consensus 160 ~~~~~G~~~g~~~g~~l 176 (438)
T PRK10133 160 TFNSFGAIIAVVFGQSL 176 (438)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77788888888877654
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.3e-18 Score=200.94 Aligned_cols=361 Identities=11% Similarity=0.009 Sum_probs=202.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCchh-hHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHH--HHHHHHHHHH
Q 044175 24 SSLENMGFIANAISMVLYFKNEMHFNLA-GASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGT--LEVLALVMIT 100 (537)
Q Consensus 24 ~~~~~~~~~~~~~~~~~yl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~--~~~i~~~l~~ 100 (537)
.+.+++....+.......+++..+.+.. ..++..+++.+...++.+++|+++||+ |||+++..... +...+..+..
T Consensus 24 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~ 102 (1140)
T PRK06814 24 AFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYG 102 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333334444444333 467778889999999999999999995 99998644222 2222222222
Q ss_pred HHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHH
Q 044175 101 VQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAV 180 (537)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ 180 (537)
... .+++.++++|+++|++.+...|...+++.|++++++ |++++++...+.++|.+
T Consensus 103 ~~~------------------~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~ 158 (1140)
T PRK06814 103 FHL------------------NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAIL 158 (1140)
T ss_pred HHH------------------hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHH
Confidence 221 267899999999999999999999999999999887 99999999999999999
Q ss_pred HHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHhccccccccCCCCCchhhHHHHHHHHHHhccCCCCCChhhhhhhhh
Q 044175 181 IGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQVVVVAIKNRKLSLPENPEELYEINE 260 (537)
Q Consensus 181 i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (537)
+||.++|++....+|+..|+..++..+++.++.+..++. +..++..+...... +
T Consensus 159 igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----------------------~--- 212 (1140)
T PRK06814 159 LGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKT-GNAAPDLKIDRNII----------------------R--- 212 (1140)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCC-CCCCCCCeeccchH----------------------H---
Confidence 999999999988899988855444444333333322211 11100000000000 0
Q ss_pred hhccCCccccCCCCchhHhhhhccCCCCCCCCCCcccccchhHHHHHHHHhH-HHHHHHHHHHHHhhhhcchhhheeccc
Q 044175 261 KERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVKILTRM-MPILASTILMNTCLAQLQTFSVTQGAY 339 (537)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~ 339 (537)
+ ..+. + +.+...+.+... +....+...+.....+.+. +.....+
T Consensus 213 --------------~--~~~~-------------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~g 257 (1140)
T PRK06814 213 --------------S--TITL-------------L-----KYAKADKRIWLAILGISWFWLVGAVVLSQLPL-LAKETLG 257 (1140)
T ss_pred --------------H--HHHH-------------H-----HHHhcCchHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHcC
Confidence 0 0000 0 000000111111 1111111111122222211 2111111
Q ss_pred cCCCCCccccCCCcccccchHhHHHHhhhhcchhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 044175 340 MDPQLGSIKVPTPSIPVIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVEVQRRNAFN 419 (537)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~ 419 (537)
.+ ....+.+.....++.++...+..++.++..+ .+.+..+.++.++..+...+.... .....
T Consensus 258 ~~------~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 319 (1140)
T PRK06814 258 GD------ENVATLFLAVFSVGVAVGSFLASKLSEGRIT-----------LLYVPIGALLMGLFGLDLAFASSS-VPAEP 319 (1140)
T ss_pred Cc------hHHHHHHHHHHHHHHHHHHHHHHHHhCCcee-----------eeeehHHHHHHHHHHHHHHhcccc-ccccc
Confidence 11 1112334444556666666666654322211 112333333333332222221000 00000
Q ss_pred cC-----C-CccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044175 420 QM-----P-PKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLSFGNFLSSVFVDIIN 488 (537)
Q Consensus 420 ~~-----g-~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~~~~~l~~~i~ 488 (537)
.. . ....+.+.+++..++.|++.++..+...+++.+.+|++.||+++|+.++.+.++..+++.+.+.+.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~ 394 (1140)
T PRK06814 320 AQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQ 394 (1140)
T ss_pred ccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0 000234556677888899999999999999999999999999999999999999999998887765
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-18 Score=176.59 Aligned_cols=140 Identities=14% Similarity=0.149 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHH
Q 044175 54 SNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCL 133 (537)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 133 (537)
+.+++++.++..+++.++|+++||+ |||..++++.++..++.+++..+.. ..+..+++++|++
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~----------------~~~~e~li~GR~i 125 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKS----------------APSFEMLILGRLI 125 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHH----------------hhhHHHHHHHHHH
Confidence 6778889999999999999999995 9999999999999999888877643 2477899999999
Q ss_pred HHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHH-h-hhcccccchHHHHHHHHHHHHHHH
Q 044175 134 YALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAI-V-YVSTEKAWWGGFLISSIVTFIGFI 211 (537)
Q Consensus 134 ~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~-~-~l~~~~g~~~~f~i~~~~~~~~~~ 211 (537)
.|+..|......+.++.|..|++- ||..-....++..+|..++..++ . .+.....|++.+....+..++.++
T Consensus 126 ~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~ 199 (485)
T KOG0569|consen 126 VGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLA 199 (485)
T ss_pred HHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988 88888888888999999886555 2 233455699988888877666665
Q ss_pred HHHhc
Q 044175 212 ALVIG 216 (537)
Q Consensus 212 ~~~~~ 216 (537)
.+.+.
T Consensus 200 ~l~~~ 204 (485)
T KOG0569|consen 200 LLPFL 204 (485)
T ss_pred HHhcC
Confidence 55444
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.3e-19 Score=180.77 Aligned_cols=160 Identities=13% Similarity=0.048 Sum_probs=130.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHH
Q 044175 16 ACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLA 95 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~ 95 (537)
..+......+......+...+..+.++++++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~ 80 (366)
T TIGR00886 2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIP 80 (366)
T ss_pred chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHH
Confidence 345556666666667776777777789999999999999999999999999999999999995 9999999999999999
Q ss_pred HHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHH
Q 044175 96 LVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTT 175 (537)
Q Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 175 (537)
.+++.++. .+.+.+++.|+++|++.+. .+...++++|.+|+++ |++..++.....
T Consensus 81 ~~~~~~~~------------------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~------r~~~~~~~~~~~ 135 (366)
T TIGR00886 81 CLWAGLAV------------------QSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKI------QGTALGLAAGWG 135 (366)
T ss_pred HHHHHHHh------------------hhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhh------hhHHHHHHHHHh
Confidence 98888763 1567888999999999665 4567889999999777 888888888777
Q ss_pred HHHHHHHHHHHhhhcc----------cccchHHHHH
Q 044175 176 TLAAVIGVTAIVYVST----------EKAWWGGFLI 201 (537)
Q Consensus 176 ~~g~~i~~~~~~~l~~----------~~g~~~~f~i 201 (537)
++|..+++.+++.+.. ..+||+.|++
T Consensus 136 ~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~ 171 (366)
T TIGR00886 136 NMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI 171 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence 7787777777665543 3479998833
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.4e-18 Score=176.12 Aligned_cols=354 Identities=13% Similarity=0.084 Sum_probs=209.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhc---cchhH-HHHHHHHHHHHHHHHHH
Q 044175 25 SLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTF---LSRFA-TCLIFGTLEVLALVMIT 100 (537)
Q Consensus 25 ~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~Gr~~-~~~~~~~~~~i~~~l~~ 100 (537)
+...+.+..+.++++.|+++++|+++.+++.+.++..+...+..|+.|+++||. +|||| .++++....+++.+++.
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~ 88 (437)
T TIGR00792 9 FGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLF 88 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHH
Confidence 445555666778899999999999999999999999999999999999999982 48855 56777788888877776
Q ss_pred HHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHH
Q 044175 101 VQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAV 180 (537)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ 180 (537)
..+..+. .....++++.+++.+++.+.......++..|..++.+ +|++..++.....++|..
T Consensus 89 ~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-----~R~~~~~~~~~~~~~g~~ 150 (437)
T TIGR00792 89 TTPDFSA-------------TGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPR-----ERESLSTFRRFGATLGGL 150 (437)
T ss_pred hCCCCCc-------------chHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHH-----HHHHHHHHHHHHHHHHHH
Confidence 5531000 1235667777888888888888888888888875322 177888887777777776
Q ss_pred HHHHHHhhhc-------ccccchHHHHHHHHHHHHHHHHHHhccccccccCCCCCchhhHHHHHHHHHHhccCCCCCChh
Q 044175 181 IGVTAIVYVS-------TEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQVVVVAIKNRKLSLPENPE 253 (537)
Q Consensus 181 i~~~~~~~l~-------~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 253 (537)
+++.+.+.+. +..+|+..+.+.+++..+..+..+...++.+++++++++
T Consensus 151 l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~------------------------ 206 (437)
T TIGR00792 151 LVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIE------------------------ 206 (437)
T ss_pred HHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcccc------------------------
Confidence 6655544332 246899888877766555544433332221100000000
Q ss_pred hhhhhhhhhccCCccccCCCCchhHhhhhccCCCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHhhhhcchhh
Q 044175 254 ELYEINEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVKILTRMMPILASTILMNTCLAQLQTFS 333 (537)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 333 (537)
++ . +..+. + +++...|.+...+ ......+..........
T Consensus 207 --------------~~----~--~~~~~-------------~-----~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 245 (437)
T TIGR00792 207 --------------KK----L--SLKQI-------------F-----KALFKNDQLLILC---LAYLFYNLAFNIKNGVQ 245 (437)
T ss_pred --------------cC----C--CHHHH-------------H-----HHHhCCHHHHHHH---HHHHHHHHHHHHHcchh
Confidence 00 0 00000 0 0000011111111 11111111111111111
Q ss_pred heecc-ccCCCCCccccCCCcccccchHhHHHHhhhhcchhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 044175 334 VTQGA-YMDPQLGSIKVPTPSIPVIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVEV 412 (537)
Q Consensus 334 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~ 412 (537)
.+... ..+ . ....+.+..+..+..++..++..++.+ |+ ++.+.+..+..+.+++.....+..
T Consensus 246 ~~~~~~~~~-~----~~~~~~~~~~~~i~~ii~~~~~~~l~~----r~-------g~~~~~~~~~~~~~~~~~~~~~~~- 308 (437)
T TIGR00792 246 VYYFTYVLG-D----PELFSYMGSIAIVAGLIGVLLFPRLVK----KF-------GRKILFAGGILLMVLGYLIFFFAG- 308 (437)
T ss_pred heeEeeecC-C----hHHHHHHHHHHHHHHHHHHHHHHHHHH----Hh-------CcHHHHHHHHHHHHHHHHHHHHcc-
Confidence 11110 111 0 001112223334555555566555443 32 223445666666666665544321
Q ss_pred HHhhhhccCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccC-------cchhHHHHHHHHHHHHHHHHHHHHHHH
Q 044175 413 QRRNAFNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAP-------AGMRTLSTSFTFLSLSFGNFLSSVFVD 485 (537)
Q Consensus 413 ~~~~~~~~~g~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~g~~~~~~~~g~~~~~~l~~ 485 (537)
.+.+...+..++.+++.+...+..+++..|..| ++.+|.+.|+.++...+|..+++.+.+
T Consensus 309 -------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g 375 (437)
T TIGR00792 309 -------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVG 375 (437)
T ss_pred -------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123344455677788888888888888888765 567899999999999999999999999
Q ss_pred Hhhhhh
Q 044175 486 IINAVT 491 (537)
Q Consensus 486 ~i~~~~ 491 (537)
.+.+..
T Consensus 376 ~ll~~~ 381 (437)
T TIGR00792 376 LILGII 381 (437)
T ss_pred HHHHHc
Confidence 876543
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-17 Score=170.42 Aligned_cols=155 Identities=12% Similarity=-0.061 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchh----HHHHHHHHHHHHHHHHH
Q 044175 24 SSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRF----ATCLIFGTLEVLALVMI 99 (537)
Q Consensus 24 ~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~----~~~~~~~~~~~i~~~l~ 99 (537)
.++-.+++....++++.|++ ++|.|..++|++.+.+.+...++.++.|.++||+ ||+ +.+.++..+. ....
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~---~~~~ 87 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLF---AVAF 87 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHH---HHHH
Confidence 34444555666778888984 5899999999999999999999999999999995 984 3332222111 1112
Q ss_pred HHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHH
Q 044175 100 TVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAA 179 (537)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 179 (537)
... .++.+.+++.|++.|++.+...|...++..|.. ++ |++.++......++|.
T Consensus 88 ~~~------------------~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~--~~------~~~a~~~~~~~~~lg~ 141 (382)
T PRK11128 88 WFG------------------AHSFWLLFVAIGLFNLFFSPLVPLTDALANTWQ--KQ------IGLDYGKVRLWGSIAF 141 (382)
T ss_pred HHh------------------cccHHHHHHHHHHHHHHHcccccHHHHHHHHHH--hh------ccCCcchHHHHHHHHH
Confidence 221 136788888999999999999998888777652 22 5666777777788999
Q ss_pred HHHHHHHhhhcccccchHHHHHHHHHHHHH
Q 044175 180 VIGVTAIVYVSTEKAWWGGFLISSIVTFIG 209 (537)
Q Consensus 180 ~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~ 209 (537)
+++|.+++++.+++|||..|++.+....+.
T Consensus 142 ~igp~lgg~l~~~~g~~~~f~~~~~~~~~~ 171 (382)
T PRK11128 142 VIGSALTGKLVSWFGEQAILWILTAGVASM 171 (382)
T ss_pred HHHHHHHHHHHHHcChhHHHHHHHHHHHHH
Confidence 999999999999899999998766544333
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.7e-18 Score=173.59 Aligned_cols=157 Identities=11% Similarity=-0.037 Sum_probs=119.5
Q ss_pred HHHHHhhh-hcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCC
Q 044175 37 SMVLYFKN-EMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGK 115 (537)
Q Consensus 37 ~~~~yl~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 115 (537)
.+...+.+ ++|+|.+|.+++.++..+.+.++.++.|++.||+ |.|+++.++.++..+.+++++++.. +.
T Consensus 55 ~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~~i~~~~~~~a~~--~~------- 124 (462)
T PRK15034 55 AVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGRRWTVFSTAILIIPCVWLGIAVQ--NP------- 124 (462)
T ss_pred HHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHHc--cc-------
Confidence 33445544 7999999999999999999999999999999995 9999999999999999988887520 00
Q ss_pred CCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhc-----
Q 044175 116 SSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVS----- 190 (537)
Q Consensus 116 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~----- 190 (537)
.+++..+++.|++.|++ |...+.....+++++|+++ |++++++.....|+|..+++++.+.+.
T Consensus 125 -----~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~ 192 (462)
T PRK15034 125 -----NTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGSALGINGGLGNLGVSVMQLVAPLVIFVPVF 192 (462)
T ss_pred -----CCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 13788999999999998 7788889999999999887 899999987666777766655544322
Q ss_pred c-------------cccchHHHHHHHHHHHHHHHHHHh
Q 044175 191 T-------------EKAWWGGFLISSIVTFIGFIALVI 215 (537)
Q Consensus 191 ~-------------~~g~~~~f~i~~~~~~~~~~~~~~ 215 (537)
. ..+|+.++++..+..++..+..++
T Consensus 193 ~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~ 230 (462)
T PRK15034 193 AFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWS 230 (462)
T ss_pred HHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 234666665555555444444443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.5e-18 Score=173.84 Aligned_cols=156 Identities=14% Similarity=0.110 Sum_probs=113.7
Q ss_pred HHHHHhhhhcC--CchhhHHHHHHHH-----HHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccC
Q 044175 37 SMVLYFKNEMH--FNLAGASNTLTNL-----MGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLH 109 (537)
Q Consensus 37 ~~~~yl~~~l~--~~~~~~~~~~~~~-----~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 109 (537)
+...++.++.. .++++.+.+.+.. .+...++.++.|+++||+ ||||++..+.++..++.+++.++.+.+...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~ 92 (394)
T TIGR00883 14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLIGLLPSYATIG 92 (394)
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHhhCCChhhhH
Confidence 45555555543 4445555544432 233346789999999995 999999999999999998888764211000
Q ss_pred CCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 044175 110 PPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYV 189 (537)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l 189 (537)
......++++|+++|++.+...+...++++|.+++++ |++..+....+..+|..+++.++..+
T Consensus 93 -----------~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i~~~~~~~~ 155 (394)
T TIGR00883 93 -----------IWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLLAALTVLLL 155 (394)
T ss_pred -----------HHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0012357889999999999999999999999999887 88899998888889999988877654
Q ss_pred c--------ccccchHHHHHHHHHHHHHH
Q 044175 190 S--------TEKAWWGGFLISSIVTFIGF 210 (537)
Q Consensus 190 ~--------~~~g~~~~f~i~~~~~~~~~ 210 (537)
. +.++||..|.+.++..++..
T Consensus 156 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 184 (394)
T TIGR00883 156 SYLLGDDALLEWGWRIPFLVSAVLVLIGL 184 (394)
T ss_pred HHhcCHHHhhccchHHHHHHHHHHHHHHH
Confidence 3 35789999987766554443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-17 Score=178.17 Aligned_cols=380 Identities=15% Similarity=0.068 Sum_probs=215.0
Q ss_pred HHHHHHHHHhhhhc-----CCch--hhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhc
Q 044175 33 ANAISMVLYFKNEM-----HFNL--AGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYS 105 (537)
Q Consensus 33 ~~~~~~~~yl~~~l-----~~~~--~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~ 105 (537)
+....+..++++.. ..+. .+.+++.++..+++.++.++.|+++|++ |||++++++.+++.+|.++++.+.
T Consensus 64 g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a~-- 140 (513)
T KOG0254|consen 64 GGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALAP-- 140 (513)
T ss_pred ccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHhh--
Confidence 45555555555422 1122 3448999999999999999999999995 999999999999999999999985
Q ss_pred cccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 044175 106 EKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTA 185 (537)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~ 185 (537)
+..+++++|+++|+|.|......+.+++|..|++. |+...+....+.++|..++..+
T Consensus 141 -----------------~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~~~ 197 (513)
T KOG0254|consen 141 -----------------SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGYCI 197 (513)
T ss_pred -----------------hHHHHHHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999888 9999999999999999998555
Q ss_pred Hhhhccc-ccchHHHHHHHHHHHHHHHHHHhcc--ccccccCCCCCchhhHHHHHHHHHHhccCCCCCChhhhhhhhhhh
Q 044175 186 IVYVSTE-KAWWGGFLISSIVTFIGFIALVIGK--PFYRNQQPGESPLVRVSQVVVVAIKNRKLSLPENPEELYEINEKE 262 (537)
Q Consensus 186 ~~~l~~~-~g~~~~f~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (537)
+....+. ++||..+.+..+..++..+..++.. |++..+ +....+..+.+..... .+..+...+..+..
T Consensus 198 ~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~---~g~~~~a~~~l~~l~g---~~~~~~~~~~~~~~--- 268 (513)
T KOG0254|consen 198 NYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIE---KGRLEEAKRSLKRLRG---LSPEDVEVELELLK--- 268 (513)
T ss_pred hhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHH---cCChHHHHHHHHHHhC---CCCcchHHHHHHHH---
Confidence 5444332 4899888877766555554433321 221111 1111111111111111 00000000110000
Q ss_pred ccCCccccCCCCchhHhhhhccCCCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHhhhhcchhhheeccccCC
Q 044175 263 RVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVKILTRMMPILASTILMNTCLAQLQTFSVTQGAYMDP 342 (537)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (537)
........ ..+ ++..|+++..+ ...|+......+..++.........+++..+.+..+.+.
T Consensus 269 -------------~~~~~~~~-~~~---~~~~~~~l~~~--~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~ 329 (513)
T KOG0254|consen 269 -------------IKLLVEAE-VAE---GKASWGELFSP--KVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKS 329 (513)
T ss_pred -------------HHHHHhhh-ccc---ccccHHHhcCc--chHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCC
Confidence 00000000 000 00112222211 122333222333333332111111112222222222211
Q ss_pred CCCccccCCCcccccchHhHHHHhhhhcchhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 044175 343 QLGSIKVPTPSIPVIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVEVQRRNAFNQMP 422 (537)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~g 422 (537)
+ ......+..+..++...+...+.|++. ++..+..|...+.+++++.+.............
T Consensus 330 ~-------~~~~~~~~~~v~~~~t~~~~~lvd~~g-----------Rr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~- 390 (513)
T KOG0254|consen 330 D-------TFLASIILGVVNFLGTLVATYLVDRFG-----------RRKLLLFGAAGMSICLVILAVVGVFALYYPNSS- 390 (513)
T ss_pred c-------hHHHHHHHHHHHHHHHHHHHHHHHHhc-----------cHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcc-
Confidence 1 111111112222222222223333332 335577788888888777666432211100000
Q ss_pred CccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 044175 423 PKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLSFGNFLSSVFVDI 486 (537)
Q Consensus 423 ~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~~~~~l~~~ 486 (537)
....+..++...++.........|..+.+..|.+|.+.|+.+.++....+++.+.+-......
T Consensus 391 -~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~ 453 (513)
T KOG0254|consen 391 -KGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPF 453 (513)
T ss_pred -cchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 113344444455555555666778888899999999999999999999999999886555444
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-17 Score=171.12 Aligned_cols=167 Identities=14% Similarity=0.154 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHH
Q 044175 19 FIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVM 98 (537)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l 98 (537)
......+....+.+...+.++ .+.+++|.+..+.+++.+.+.++..++.++.|+++||+ ||||.+..+.++..++.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~lp-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~~~ 84 (392)
T PRK10473 7 CSFALVLLYPAGIDMYLVGLP-RIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIASLL 84 (392)
T ss_pred HHHHHHHHHHHHHHHHhhhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHHHH
Confidence 344445555555554444444 45678999999999999999999999999999999995 9999999999999999888
Q ss_pred HHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHH
Q 044175 99 ITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLA 178 (537)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 178 (537)
+..+. +...+++.|+++|++.+...+...+++.|.+|+++ |++..++.+...++|
T Consensus 85 ~~~~~-------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~i~ 139 (392)
T PRK10473 85 CSLAE-------------------TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSLLNGITCII 139 (392)
T ss_pred HHHhC-------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHH
Confidence 77653 56778889999999999989999999999998777 899999998888999
Q ss_pred HHHHHHHHhhhcccccchHHHHHHHHHHHHHHHH
Q 044175 179 AVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIA 212 (537)
Q Consensus 179 ~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~ 212 (537)
..++|.+++.+.+..+|+..|++.++...+..+.
T Consensus 140 ~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~ 173 (392)
T PRK10473 140 PVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLL 173 (392)
T ss_pred HHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHH
Confidence 9999999998888889999998877655544443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-17 Score=172.65 Aligned_cols=386 Identities=11% Similarity=0.070 Sum_probs=217.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccch-hHHHHHHHHHHHHHH
Q 044175 18 GFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSR-FATCLIFGTLEVLAL 96 (537)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr-~~~~~~~~~~~~i~~ 96 (537)
-.+.+..++...++-...++++.|+++++|++..+.|++.+.+.++..+++++.|+++||+ || |+++.++.+...++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~-g~~r~~~~~~~~~~~~~~ 83 (418)
T TIGR00889 5 AKLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKW-LSAQKVYAVCHFAGALLL 83 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHH
Confidence 3456667777777777779999999999999999999999999999999999999999995 65 778888877777777
Q ss_pred HHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcc--------cCCCCCChhhhhhhhhHH
Q 044175 97 VMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGA--------GQFDEKDPKGAKALASYF 168 (537)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~--------~~~~~~~~~~~~~r~~~~ 168 (537)
.+..+.. +...+.+.|++.+++.+...+...+... |...... |.+.+
T Consensus 84 ~~~~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~------~~r~~ 138 (418)
T TIGR00889 84 FFAAQVT-------------------TPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFP------PIRVM 138 (418)
T ss_pred HHHHHhc-------------------CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCC------Ceeee
Confidence 6666542 5667778888888887766665554422 2111111 34444
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHhccccccccCCCCCchhhHHHHHHHHHHhccCCC
Q 044175 169 NYFLLTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQVVVVAIKNRKLSL 248 (537)
Q Consensus 169 ~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 248 (537)
+ .+|.+++|.+++.+.....|. +|++.++..++..+..+. .++.++.+++++. +
T Consensus 139 G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~--~---------------- 192 (418)
T TIGR00889 139 G------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVFALT-LPDIPVAKSTAKM--S---------------- 192 (418)
T ss_pred h------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHHhc-CCCCCCCcccccc--C----------------
Confidence 3 478888888888774333344 455555444433333222 2221110000000 0
Q ss_pred CCChhhhhhhhhhhccCCccccCCCCchhHhhhhccCCCCCCCCCCcccccchhHHHHHHHHhH-HHHHHHHHHHHHhhh
Q 044175 249 PENPEELYEINEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVKILTRM-MPILASTILMNTCLA 327 (537)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~ 327 (537)
..+ . ...++.+ ....+++... +..+..........
T Consensus 193 ------~~~-----------~----~~~~~~~----------------------~~k~~~~~~~~~~~~~~~~~~~~~~- 228 (418)
T TIGR00889 193 ------IKV-----------M----LGLDAFI----------------------LFKNKRMAIFFFFSMLLGAPLQITN- 228 (418)
T ss_pred ------HHH-----------H----hhhhHHH----------------------HhcCCCeeeHHHHHHHHHhHHHHHH-
Confidence 000 0 0000000 0000011001 11111111111111
Q ss_pred hcchhhheeccccCCCCC-ccc-cCCCcccccchHhHHHHhhhhcchhccccccccCCCCCCCchHHHHHHHHHHHHHHH
Q 044175 328 QLQTFSVTQGAYMDPQLG-SIK-VPTPSIPVIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMT 405 (537)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~ 405 (537)
.....+... .+.+...+ ++. ...+....+..+..++......++.+++ ++.+.+..+.++.+++..
T Consensus 229 ~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-----------g~r~~l~~~~~~~~v~~~ 296 (418)
T TIGR00889 229 IFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-----------GIKKVMLLSLVAWALRFG 296 (418)
T ss_pred HhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-----------CcHHHHHHHHHHHHHHHH
Confidence 111111111 01111000 000 0112223333344444444555544333 334556677777766655
Q ss_pred HHHHHHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchhHHHHHHHH-HHHHHHHHHHHHHH
Q 044175 406 IAGFVEVQRRNAFNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTF-LSLSFGNFLSSVFV 484 (537)
Q Consensus 406 ~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~~g~~~~~~l~ 484 (537)
........ ....+.++...++.+++++...+....++.+.+|++.|++++|+.+ ...++|..+++.+.
T Consensus 297 l~~~~~~~-----------~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~ 365 (418)
T TIGR00889 297 FFAYGDPE-----------YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILS 365 (418)
T ss_pred HHHHcCcc-----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 54442100 0123345556788889988888998999999999999999999997 56889999999999
Q ss_pred HHhhhhhccCCCCCCCCccCCCCCCchhHHHHHHHHHHHHHHHHHHhhhcc
Q 044175 485 DIINAVTKRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYLYAAA 535 (537)
Q Consensus 485 ~~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~~~~~l~~~~~v~~~~~~~ 535 (537)
+.+.+..+. .+.-+++..|.+.+++.++..+.++++.+
T Consensus 366 G~l~~~~g~-------------~~~~~~~~~f~~~~~~~~i~~~l~~~~~~ 403 (418)
T TIGR00889 366 GVMVEKMFA-------------YGTFDWQTMWLFFAGYIAILAVLFMIFFK 403 (418)
T ss_pred HHHHHHhcc-------------ccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 977643311 00113566677777777777666666554
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.5e-17 Score=170.57 Aligned_cols=177 Identities=11% Similarity=0.093 Sum_probs=139.7
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhcc-----chhHH-H
Q 044175 12 GGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFL-----SRFAT-C 85 (537)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~-----Gr~~~-~ 85 (537)
.++|..+.++...+......+.....++.|+++ .|.+.++.+.... .... +++.++.|.++|| + ||||. +
T Consensus 9 ~~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~-~g~~~~~ig~~~~-~~~~-~~~~~l~gpl~Dr-~~~~~~Grrr~~l 84 (491)
T PRK11010 9 FQQPNSAILLILGFASGLPLALTSGTLQAWMTV-ENIDLKTIGFFSL-VGQA-YVFKFLWSPLMDR-YTPPFLGRRRGWL 84 (491)
T ss_pred HcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHH-HHHH-HHHHHHHHHHHHc-ccccCCCCchHHH
Confidence 355667778888888888888788888888764 5999999988632 2222 3689999999999 7 99986 6
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhh
Q 044175 86 LIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALA 165 (537)
Q Consensus 86 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 165 (537)
..+.+...++...+++... ..+...+.+.+++.+++.+...+...++..|++|+++ |+
T Consensus 85 l~~~i~~~~~~~~~a~~~~----------------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~------rg 142 (491)
T PRK11010 85 LATQLLLLVAIAAMGFLEP----------------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE------RG 142 (491)
T ss_pred HHHHHHHHHHHHHHHHcCC----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hH
Confidence 6777777777777766531 1367788888999999999999999999999999777 89
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcc-cccchHHHHHHHHHHHHHHHHHH
Q 044175 166 SYFNYFLLTTTLAAVIGVTAIVYVST-EKAWWGGFLISSIVTFIGFIALV 214 (537)
Q Consensus 166 ~~~~~~~~~~~~g~~i~~~~~~~l~~-~~g~~~~f~i~~~~~~~~~~~~~ 214 (537)
++.++...+..+|..+++.+++++.+ ..|||..|++.++..++..+..+
T Consensus 143 ~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~ 192 (491)
T PRK11010 143 AGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL 192 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999888999999999999999888 47999999987766555544433
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.1e-18 Score=171.77 Aligned_cols=149 Identities=11% Similarity=0.110 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccC
Q 044175 30 GFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLH 109 (537)
Q Consensus 30 ~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 109 (537)
.++.....+.+.+.+++|++..+.+++.+.+.++..++.++.|+++||+ ||||++.++.++..++.+.+ ..
T Consensus 14 ~~~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~------- 84 (355)
T TIGR00896 14 PALTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SA------- 84 (355)
T ss_pred CccccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hh-------
Confidence 3344444455567789999999999999999999999999999999995 99999999998888877665 33
Q ss_pred CCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 044175 110 PPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYV 189 (537)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l 189 (537)
.+...+++.|++.|++.+...+..+..+.|.++ ++ |++++++.+...++|..+++.+++.+
T Consensus 85 ------------~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~i~~~~~~~l 145 (355)
T TIGR00896 85 ------------PGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR------VGLMTGLYSMALMGGAALAAAATVPL 145 (355)
T ss_pred ------------ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch------hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 256778899999999999988888888888876 44 78899998888899999999998888
Q ss_pred cccc--cchHHHHHHHHHH
Q 044175 190 STEK--AWWGGFLISSIVT 206 (537)
Q Consensus 190 ~~~~--g~~~~f~i~~~~~ 206 (537)
.+.. +||..|.+.+...
T Consensus 146 ~~~~~~~w~~~f~~~~~~~ 164 (355)
T TIGR00896 146 AQHSGGHWQQALAWWALPA 164 (355)
T ss_pred HHhhhhhHHHHHHHHHHHH
Confidence 7654 3888887655433
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-17 Score=164.12 Aligned_cols=389 Identities=11% Similarity=-0.015 Sum_probs=238.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHH
Q 044175 13 GFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLE 92 (537)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~ 92 (537)
++|.++.-.. .+.-.+.--.+...+..++++++|+|++|.+++..+-.+...+..++-|.+.||+ |.|++..++.++.
T Consensus 12 ~~~~L~~S~~-af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~~l~ 89 (417)
T COG2223 12 ARRNLWLSTL-AFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSMLLL 89 (417)
T ss_pred hhHHHHHHHH-HHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHHHHH
Confidence 4444443333 3333333333445666788899999999999999999999999999999999995 9999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHH
Q 044175 93 VLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFL 172 (537)
Q Consensus 93 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 172 (537)
.+-.+..+++... .+.+.+++.+++.|++ |...++..+.+++.||+++ .+.+++++.
T Consensus 90 ~IP~~~~~~a~~~----------------~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~------qG~AlGI~g 146 (417)
T COG2223 90 LIPCLGLAFAVTY----------------PSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEK------QGLALGIAG 146 (417)
T ss_pred HHHHHHHHHHccC----------------CchHHHHHHHHHHhcc-cceehcccccccccCChhh------hhHHHHHhc
Confidence 9999999988632 2446899999999998 5556888889999999988 899999988
Q ss_pred HHHHHHHHHHHHHHhhhccccc---chHHHHHHHHHHHHHHHHHHhccccccccCCCCCchhhHHHHHHHHHHhccCCCC
Q 044175 173 LTTTLAAVIGVTAIVYVSTEKA---WWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQVVVVAIKNRKLSLP 249 (537)
Q Consensus 173 ~~~~~g~~i~~~~~~~l~~~~g---~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 249 (537)
..|+|..+...+++.+....+ |+....+..+..++..+..++..++.++.++..++..+
T Consensus 147 -~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~----------------- 208 (417)
T COG2223 147 -AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP----------------- 208 (417)
T ss_pred -cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch-----------------
Confidence 999999999999999888888 88888877777777666665554433322221111100
Q ss_pred CChhhhhhhhhhhccCCccccCCCCchhHhhhhccCCCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHhhhhc
Q 044175 250 ENPEELYEINEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVKILTRMMPILASTILMNTCLAQL 329 (537)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 329 (537)
..++ .+...+.+.++..+-..+..-++.+...
T Consensus 209 ---------------------------~~~~---------------------~v~~~~~~W~lsllY~~tFG~Fvgfs~~ 240 (417)
T COG2223 209 ---------------------------AQLK---------------------AVFSNKDTWLLSLLYFATFGGFVGFSAY 240 (417)
T ss_pred ---------------------------hHHH---------------------HHhcCcchHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0000111111111111121112222211
Q ss_pred chhhheeccccCCCCCccccCCCcccccchHhHHHHhhhhcchhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 044175 330 QTFSVTQGAYMDPQLGSIKVPTPSIPVIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGF 409 (537)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~ 409 (537)
.+.+.....+.+ ....+......++...+.-|+-.++.|++ +..+.+...+..++++....+.
T Consensus 241 l~~~~~~~fg~~------~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-----------Gg~rv~~~~f~~~~~~~~~l~~ 303 (417)
T COG2223 241 LPMYLVTQFGLS------PVTAGLIAFLFPLIGALARPLGGWLSDRI-----------GGRRVTLAVFVGMALAAALLSL 303 (417)
T ss_pred HHHHHHHhcCCC------hhhHHHHHHHHHHHHHHHHhccchhhhhc-----------cchhHHHHHHHHHHHHHHHHHc
Confidence 121111111111 12222333334444445555555544443 3445566666666666666555
Q ss_pred HHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044175 410 VEVQRRNAFNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLSFGNFLSSVFVDIINA 489 (537)
Q Consensus 410 ~~~~~~~~~~~~g~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~~~~~l~~~i~~ 489 (537)
.... ..+ +.+.+.....++.+++..+..+-..+-.+..++|+ +-|...|+.....++|++.-|...+...+
T Consensus 304 ~~~~-----~~~---~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~ 374 (417)
T COG2223 304 FLTG-----FGH---GGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLD 374 (417)
T ss_pred cccc-----ccc---CcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHH
Confidence 3211 000 11222222223333333334444445555566655 57788999999999998888877777664
Q ss_pred hhccCCCCCCCCccCCCCCCchhHHHHHHHHHHHHHHHHHHhhhccc
Q 044175 490 VTKRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYLYAAAW 536 (537)
Q Consensus 490 ~~~~~~~~~~~w~~~~~l~~~~~~~~f~~~~~l~~~~~v~~~~~~~~ 536 (537)
.++ .+...|+++..+.+++.+..+...+|
T Consensus 375 ~tg------------------~~~~~f~~~~~~~~~a~v~~~~~y~r 403 (417)
T COG2223 375 LTG------------------SYTGAFMLLLAFYLVALVLTWALYAR 403 (417)
T ss_pred hcc------------------cHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 442 24556888888888888877766543
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.6e-17 Score=169.25 Aligned_cols=356 Identities=15% Similarity=0.100 Sum_probs=228.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHH
Q 044175 15 RACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVL 94 (537)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i 94 (537)
|.+..+.+..++.+++...-..-++-++ .++.-|+...+.+..+..+...+..+++|.++||+ .|||+++.+.++..+
T Consensus 10 ~~Fr~lw~a~~iS~lG~~~~~va~~wlv-~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~ 87 (524)
T PF05977_consen 10 RNFRRLWIAQLISNLGDWMQTVALAWLV-TQLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRAL 87 (524)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHH
Confidence 3445555666666666554434444333 45666888999999999999999999999999995 999999999988777
Q ss_pred HHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHH
Q 044175 95 ALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLT 174 (537)
Q Consensus 95 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 174 (537)
..+.+.+..... ..+.+.+++.-++.|++.+...|...+++.|..|+++ ..++.++....
T Consensus 88 ~~~~L~~l~~~~--------------~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~al~s~~ 147 (524)
T PF05977_consen 88 VALLLAVLAFFG--------------LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANALNSIS 147 (524)
T ss_pred HHHHHHHHHHhC--------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHHHHHHH
Confidence 665555432111 1366788888899999999999999999999999877 88999999999
Q ss_pred HHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHhccccccccCCCCCchhhHHHHHHHHHHhccCCCCCChhh
Q 044175 175 TTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQVVVVAIKNRKLSLPENPEE 254 (537)
Q Consensus 175 ~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 254 (537)
.|+...+||.++|.+....|-...|.+.++..++.+..+...+++.++ ++.+.+...+-++.
T Consensus 148 ~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~~---~~~~~e~~~~~l~~--------------- 209 (524)
T PF05977_consen 148 FNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPPP---SSLPRERFFSALRE--------------- 209 (524)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc---cccchhhhhhhHHH---------------
Confidence 999999999999999888888889999887766555444433322111 10000000000000
Q ss_pred hhhhhhhhccCCccccCCCCchhHhhhhccCCCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHhh---hhcch
Q 044175 255 LYEINEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVKILTRMMPILASTILMNTCL---AQLQT 331 (537)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~ 331 (537)
-.++. ...+.+...+. ...++.... ....+
T Consensus 210 --------------------G~ryv------------------------~~~~~l~~~l~---~~~~~~l~~~a~~aLlP 242 (524)
T PF05977_consen 210 --------------------GLRYV------------------------RSSPPLRSVLL---RSFLFNLFASAVWALLP 242 (524)
T ss_pred --------------------HHHHH------------------------hcchHHHHHHH---HHHHHHHhhhHHHHhhh
Confidence 00000 00011111111 111111111 11111
Q ss_pred hhheeccccCCCCCccccCCCcccccchHhHHHHhhhhcchhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 044175 332 FSVTQGAYMDPQLGSIKVPTPSIPVIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVE 411 (537)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~ 411 (537)
.+..+ ..+.. ....+.+....+++.++.+.+..+ .+|. .+..+.+..+.++.+++++..++.
T Consensus 243 l~a~~--~l~~~----a~~yGll~a~~gvGai~Gal~~~~-----l~~~------~~~~~lv~~~~~~~a~~~~~lal~- 304 (524)
T PF05977_consen 243 LFARD--VLGGG----ASGYGLLLAAFGVGAILGALLLPR-----LRRR------LSSRRLVLLASLLFALALLLLALS- 304 (524)
T ss_pred HHHHH--HhCCc----HHHHHHHHHHHHHHHHHHHHHHHH-----hhcc------cCcchhhHHHHHHHHHHHHHHhcc-
Confidence 11111 11111 111223333444555554444333 2222 234455666777777777666653
Q ss_pred HHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044175 412 VQRRNAFNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLSFGNFLSSVFVDIINA 489 (537)
Q Consensus 412 ~~~~~~~~~~g~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~~~~~l~~~i~~ 489 (537)
.+.+..++..++.|++........++...+..|+++||+..+++.+....+..+|..+.+.+.+
T Consensus 305 --------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~ 368 (524)
T PF05977_consen 305 --------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD 368 (524)
T ss_pred --------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2445666678888999999999999999999999999999999999999999999999887764
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-16 Score=163.86 Aligned_cols=171 Identities=15% Similarity=0.078 Sum_probs=135.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHH
Q 044175 16 ACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLA 95 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~ 95 (537)
+++.+.+.-+...+.+ ++...+.+.+++++|.++.+.+++.+.+.++..++.++.|++.||+ |||+++.++.++++++
T Consensus 4 ~~~~~~~~f~~~G~~~-~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g 81 (410)
T TIGR00885 4 PFALITSLFALWGFAN-DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALG 81 (410)
T ss_pred HHHHHHHHHHHHHHHH-HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHH
Confidence 3444555555555554 4544555667899999999999999999999999999999999995 9999999999999999
Q ss_pred HHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHH
Q 044175 96 LVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTT 175 (537)
Q Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 175 (537)
.+++..+.. .+++..+++.|++.|+|.|...+..++++.+..|+++ |++..+..+...
T Consensus 82 ~~l~~~~~~----------------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 139 (410)
T TIGR00885 82 AFLFWPAAE----------------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLNLAQSFN 139 (410)
T ss_pred HHHHHHHHh----------------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHHHHHHHH
Confidence 887654421 1367889999999999999999999999999888766 677788888888
Q ss_pred HHHHHHHHHHHhhhccc--------------------------ccchHHHHHHHHHHHHHH
Q 044175 176 TLAAVIGVTAIVYVSTE--------------------------KAWWGGFLISSIVTFIGF 210 (537)
Q Consensus 176 ~~g~~i~~~~~~~l~~~--------------------------~g~~~~f~i~~~~~~~~~ 210 (537)
++|..++|.+++.+... .+||.+|++.+++.++..
T Consensus 140 ~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~ 200 (410)
T TIGR00885 140 PFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVA 200 (410)
T ss_pred HHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888766321 369999977666544433
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.8e-16 Score=160.96 Aligned_cols=156 Identities=12% Similarity=0.082 Sum_probs=118.1
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhc----cchhHHH-HHHHHHHHHHHHHHHHHhhccccC
Q 044175 35 AISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTF----LSRFATC-LIFGTLEVLALVMITVQAYSEKLH 109 (537)
Q Consensus 35 ~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~----~Gr~~~~-~~~~~~~~i~~~l~~~~~~~~~~~ 109 (537)
.....+.+.+++|+|.++.++.... .+...+ .++.|.++||+ +||||.+ +.+.++.++....+.+...
T Consensus 7 ~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~----- 79 (356)
T TIGR00901 7 VGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP----- 79 (356)
T ss_pred HHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc-----
Confidence 3444445556789999999999655 344444 89999999994 3899974 5667777777666655421
Q ss_pred CCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 044175 110 PPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYV 189 (537)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l 189 (537)
..+...+....++.+++.+...+...+++.|.+|+++ |+++.++...+.++|.++++.+++++
T Consensus 80 -----------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~l~~~l 142 (356)
T TIGR00901 80 -----------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGMLLSGSLALVL 142 (356)
T ss_pred -----------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1245556666677888888888999999999998777 89999999999999999999999988
Q ss_pred ccccc--------chHHHHHHHHHHHHHHHHHH
Q 044175 190 STEKA--------WWGGFLISSIVTFIGFIALV 214 (537)
Q Consensus 190 ~~~~g--------~~~~f~i~~~~~~~~~~~~~ 214 (537)
....+ ||..|++.++..++..+..+
T Consensus 143 ~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~ 175 (356)
T TIGR00901 143 ASPEFANTGLITLWGYIFFWTALLILPGLLVTL 175 (356)
T ss_pred hhhcccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 87777 99999988876655554433
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.8e-15 Score=153.23 Aligned_cols=166 Identities=8% Similarity=0.052 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhcc-----chhH-HHHHHHHHHH
Q 044175 20 IFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFL-----SRFA-TCLIFGTLEV 93 (537)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~-----Gr~~-~~~~~~~~~~ 93 (537)
++..-+.....+.-...-+|.|+++ .|++.++.|++...... .+..++.|+++|| + |||| .+.++.++.+
T Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr-~~~~~~g~rr~~l~~~~~~~~ 79 (402)
T PRK11902 4 MLLLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDR-YTPPLLGRRRGWLLLTQVGLA 79 (402)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHc-ccccCCCcchhHHHHHHHHHH
Confidence 3445556666666667788889875 59999999999666554 6999999999999 6 7776 6888888888
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHH
Q 044175 94 LALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLL 173 (537)
Q Consensus 94 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 173 (537)
++...+.+... ..+.+.+.+..++.+...+...+...+++.|.+|+++ |+++.++...
T Consensus 80 l~~~~l~~~~~----------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~~~~~ 137 (402)
T PRK11902 80 ASIAAMAFCPP----------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAAVKVL 137 (402)
T ss_pred HHHHHHHhcCc----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHHHHHH
Confidence 88777766521 1245666667677788888889999999999999877 8999999888
Q ss_pred HHHHHHHHHHHHHhhhccc-ccchHHHHHHHHHHHHHHH
Q 044175 174 TTTLAAVIGVTAIVYVSTE-KAWWGGFLISSIVTFIGFI 211 (537)
Q Consensus 174 ~~~~g~~i~~~~~~~l~~~-~g~~~~f~i~~~~~~~~~~ 211 (537)
+.++|..+++.+++++.+. .|||..|++.++..++..+
T Consensus 138 g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l 176 (402)
T PRK11902 138 GYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGAL 176 (402)
T ss_pred HHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHH
Confidence 8899999999998888775 5999999987765544443
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.1e-15 Score=154.07 Aligned_cols=434 Identities=13% Similarity=0.025 Sum_probs=234.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhh---ccchhHHHHHH-HHH
Q 044175 16 ACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDT---FLSRFATCLIF-GTL 91 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~---~~Gr~~~~~~~-~~~ 91 (537)
.+..+....+--.+++-...+++++|+ +++|.+..+.+.+..+..+...+.+|+.|+++|| .+||||.++++ .+.
T Consensus 5 ~li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~ 83 (477)
T TIGR01301 5 KLLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAAL 83 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHH
Confidence 344555555666677666677788877 5799999999999999999999999999999994 24999999885 555
Q ss_pred HHHHHHHHHHHhhccc-cCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHH
Q 044175 92 EVLALVMITVQAYSEK-LHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNY 170 (537)
Q Consensus 92 ~~i~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 170 (537)
.+++.++++.+..... +.+...+++ +......+.++..+..++.....+...++++|..|+++++ ++.+.++
T Consensus 84 ~~~~l~ll~~~~~~~~~~~~~~~~~~---~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~----~~~a~~~ 156 (477)
T TIGR01301 84 VAFAVILIGFAADIGHLFGDNLDKKT---KPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR----TRIANAY 156 (477)
T ss_pred HHHHHHHHHhCchhhhhccccccccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH----HHHHHHH
Confidence 6666666666532110 000000000 0001133444555566677878888899999999977621 3578888
Q ss_pred HHHHHHHHHHHHHHHHhhhc--cc-------------ccchHHHHHHHHHHHHHHHHHHhccccccccCCCCCchhhHHH
Q 044175 171 FLLTTTLAAVIGVTAIVYVS--TE-------------KAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQ 235 (537)
Q Consensus 171 ~~~~~~~g~~i~~~~~~~l~--~~-------------~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 235 (537)
.....++|+.+++.++++.. +. .+.+..|++.+++.++......+..+|.+..++++.+ ++
T Consensus 157 ~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~-~~--- 232 (477)
T TIGR01301 157 FSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFI-NS--- 232 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccch-hh---
Confidence 88899999999999888641 11 1567889988887776666655544432211111000 00
Q ss_pred HHHHHHHhccCCCCCChhhhhhhhhhhccCCccccCCCCchhHhhhhccCCCCCCCCCCcccccchhHHHHHHHHhHHHH
Q 044175 236 VVVVAIKNRKLSLPENPEELYEINEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVKILTRMMPI 315 (537)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 315 (537)
+. + ++ ++. .+...+.+ -|+... +-.|...+....
T Consensus 233 ------------------~~-~--~~------~~~--~~~~~~~~-------------i~~~~~----~mP~~m~~l~~v 266 (477)
T TIGR01301 233 ------------------EA-A--PP------SKH--GEEAFFGE-------------LFGAFK----YLPRPVWILLLV 266 (477)
T ss_pred ------------------hc-c--cc------ccc--chhhhHHH-------------HHHHHH----HCCHHHHHHHHH
Confidence 00 0 00 000 00000000 000000 000111122222
Q ss_pred HHHHHHHHHhhhhcchhhheec-cccCCCCC-cc--ccC-CCcccccchHhHHHHhhhhcchhccccccccCCCCCCCch
Q 044175 316 LASTILMNTCLAQLQTFSVTQG-AYMDPQLG-SI--KVP-TPSIPVIPLLFMSILLPVYELLFVPFARKITGHPSGITQL 390 (537)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~--~~~-~~~~~~~~~~~~ii~~~~~~~~~~~~~~r~~~~~~~~~~~ 390 (537)
-.+...-|..+..+.|.++-+. .+-+.... .+ +.. ......++.+...+...+.++ +.||.. ..
T Consensus 267 qffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~----l~~~~g-------~~ 335 (477)
T TIGR01301 267 TCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEK----LCRGWG-------AG 335 (477)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhc-------cc
Confidence 2222222333333333322110 00000000 00 000 001111122222222222222 334432 11
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHhhhhccCC----C-ccch-HHHHHHHHHHHHHHHHHHhhhhHHHhhhccCc--ch
Q 044175 391 QRV-GVGLVLSAVSMTIAGFVEVQRRNAFNQMP----P-KQIS-LFWLSFQYCIFGIADMFTLVGLLEFFYKEAPA--GM 461 (537)
Q Consensus 391 ~~i-~~g~~l~~~~~~~~~~~~~~~~~~~~~~g----~-~~~~-~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~--~~ 461 (537)
+.. .++.++.++++....+......+..+.++ . .+.. .+.....+.+.|+.........++++.+..|+ +-
T Consensus 336 k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~ 415 (477)
T TIGR01301 336 KRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAG 415 (477)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCC
Confidence 223 56777777787766654321000001000 0 0112 35566678888999999999999999999995 45
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCccCCCCCCchhHHHHHHHHHHHHHHHHHHhhhcc
Q 044175 462 RTLSTSFTFLSLSFGNFLSSVFVDIINAVTKRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYLYAAA 535 (537)
Q Consensus 462 rg~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~~~~~l~~~~~v~~~~~~~ 535 (537)
.|..+|+.|.+..+..++.....+.+....+ ++....+.+.++.++++.+..++...
T Consensus 416 ~G~~mgilN~~I~lpQii~sl~~g~~~~~~g-----------------~~~~~~~~~~gv~~~~aa~~~~~~~~ 472 (477)
T TIGR01301 416 QGLSMGVLNLAIVIPQIIVSLGSGPWDQLFG-----------------GGNLPAFVVGAVAAFVSGLLALILLP 472 (477)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHcC-----------------CCCeeHHHHHHHHHHHHHHHHHHhCC
Confidence 5999999999999999998877766543321 12233456666666666666655543
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.7e-16 Score=150.65 Aligned_cols=116 Identities=16% Similarity=0.074 Sum_probs=103.2
Q ss_pred chhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHH
Q 044175 49 NLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFY 128 (537)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (537)
+..-.|.+-+.|.+...+.++..|.++||+ |||++++.|++..++...+.+.+. ++..++
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S~-------------------~F~afv 125 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALSR-------------------NFAAFV 125 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHH
Confidence 444568888999999999999999999996 999999999999999888777774 677788
Q ss_pred HHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 044175 129 ASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVST 191 (537)
Q Consensus 129 ~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~ 191 (537)
++|++.|+..|-. ....++++|..++++ |+.+++....+..+|.++||+++|++..
T Consensus 126 ~aR~l~Gi~kgnl-~v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 126 LARFLGGIFKGNL-SVIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHhhhhccCch-HHHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHHh
Confidence 8899999998775 667899999999887 8999999999999999999999999987
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.9e-14 Score=149.62 Aligned_cols=153 Identities=14% Similarity=0.078 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhc---cchhHHH-HHHHHHHHHH
Q 044175 20 IFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTF---LSRFATC-LIFGTLEVLA 95 (537)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~Gr~~~~-~~~~~~~~i~ 95 (537)
-....+..++.+..+.++++.|+++.+|++..++|.+.....+...+..|+.|+++||. +||||.. .++.+...+.
T Consensus 13 yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~ 92 (448)
T PRK09848 13 YSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIF 92 (448)
T ss_pred hccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHH
Confidence 33456667777777778888999999999999999999999999999999999999993 3777755 5565555555
Q ss_pred HHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHH--
Q 044175 96 LVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLL-- 173 (537)
Q Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-- 173 (537)
.+++...+ ..+.+ .......++..++.+++.+...+...++..|..++.+ + |.+..++..+
T Consensus 93 ~~~~~~~~--~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~--~---r~~~~~~r~~~~ 155 (448)
T PRK09848 93 SVLVFWVP--TDWSH----------SSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQ--S---RARLGAARGIAA 155 (448)
T ss_pred HHHHHhCc--CCCCc----------chHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHH--H---HHHHHHHHHHHH
Confidence 54443221 00000 1123444555567788888888888888777766432 2 4454444332
Q ss_pred ---HHHHHHHHHHHHHhhh
Q 044175 174 ---TTTLAAVIGVTAIVYV 189 (537)
Q Consensus 174 ---~~~~g~~i~~~~~~~l 189 (537)
..+++..++|.+.+..
T Consensus 156 ~~~~~~~~~~~~p~i~~~~ 174 (448)
T PRK09848 156 SLTFVCLAFLIGPSIKNSS 174 (448)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 2345666677666543
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.1e-14 Score=150.22 Aligned_cols=146 Identities=8% Similarity=0.012 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhh----hccch-hHHHHHHHHHHHHHH
Q 044175 22 VLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISD----TFLSR-FATCLIFGTLEVLAL 96 (537)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD----~~~Gr-~~~~~~~~~~~~i~~ 96 (537)
+..+..++.+..+.++++.|+++.+|+++..+|.+..+..+...+..|+.|+++| | +|| |+-++++.+..+++.
T Consensus 13 ~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr-~Grrrp~il~g~i~~~i~~ 91 (473)
T PRK10429 13 FGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSR-WGKFKPWILIGTLANSVVL 91 (473)
T ss_pred cchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCC-CCCcchhHhhhhHHHHHHH
Confidence 4455566777777888999999999999999999999999999999999999999 6 498 555666777777776
Q ss_pred HHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHH
Q 044175 97 VMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTT 176 (537)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 176 (537)
+++... |+.. ......++++..++.+++.........++.+|..++.+ +|.+..++.....+
T Consensus 92 ~llf~~---p~~~----------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~-----eR~~l~~~~~~~~~ 153 (473)
T PRK10429 92 FLLFSA---HLFE----------GTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKR-----EREQLVPYPRFFAS 153 (473)
T ss_pred HHHHcC---CCCC----------ccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHH-----HHHHHHHHHHHHHH
Confidence 666432 1110 01134455566667778888888888899999875322 17788887666667
Q ss_pred HHHHHHHHHH
Q 044175 177 LAAVIGVTAI 186 (537)
Q Consensus 177 ~g~~i~~~~~ 186 (537)
+|+.+.+.+.
T Consensus 154 ig~~~~~~~~ 163 (473)
T PRK10429 154 LAGFVTAGFT 163 (473)
T ss_pred HHHHHHHHHH
Confidence 7755554443
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.6e-14 Score=139.85 Aligned_cols=144 Identities=15% Similarity=0.048 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhh
Q 044175 25 SLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAY 104 (537)
Q Consensus 25 ~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~ 104 (537)
|+-..........+.+.+++.++++..|++.+..++..++.++.++.|++.+|+ |+|+.+++|+.++++|..+..=++.
T Consensus 22 Ffl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~~lF~pAa~ 100 (422)
T COG0738 22 FFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGAALFWPAAS 100 (422)
T ss_pred HHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhhhhh
Confidence 333333345667788889999999999999999999999999999999999995 9999999999999999988865432
Q ss_pred ccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 044175 105 SEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVT 184 (537)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~ 184 (537)
..++..++++.++.+.|.|......+++++...++++ ..+-++.......+|+.++|.
T Consensus 101 ----------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~rlnl~q~fn~lGa~~gp~ 158 (422)
T COG0738 101 ----------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAFRLNLAQAFNGLGAILGPL 158 (422)
T ss_pred ----------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHHHHHHHHHhhhhHHHHHHH
Confidence 2478899999999999999999999999999998765 455567777788899999999
Q ss_pred HHhhhcc
Q 044175 185 AIVYVST 191 (537)
Q Consensus 185 ~~~~l~~ 191 (537)
+++++..
T Consensus 159 ~g~~lil 165 (422)
T COG0738 159 LGSSLIL 165 (422)
T ss_pred HHHHHHH
Confidence 9988765
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.3e-15 Score=149.56 Aligned_cols=154 Identities=8% Similarity=0.009 Sum_probs=133.5
Q ss_pred HHHHHHHhhhhcCCchhh-HHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 044175 35 AISMVLYFKNEMHFNLAG-ASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDC 113 (537)
Q Consensus 35 ~~~~~~yl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 113 (537)
.++..+|+.+++|+++++ .|.+.+++..++.++.+++|+++||+ |.|+++.++.+.+.+..++++++.
T Consensus 45 ~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l~Wsl~t~L~~fa~---------- 113 (511)
T TIGR00806 45 ESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQALSFVCVWLLLLLGT---------- 113 (511)
T ss_pred HHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHH----------
Confidence 456778999999999999 99999999999999999999999995 999999999999999999999875
Q ss_pred CCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 044175 114 GKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVSTEK 193 (537)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~ 193 (537)
+...+.+.|++.|++.|... ....++..++|+++ |+++.++...+.++|.++++++++++ ..+
T Consensus 114 ---------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~L~qll-~s~ 176 (511)
T TIGR00806 114 ---------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSVLGQLL-VTL 176 (511)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence 67899999999999999999 99999999999877 99999999999999999999999985 457
Q ss_pred cchHHHHH---HHHHHHHHHHHHHhc
Q 044175 194 AWWGGFLI---SSIVTFIGFIALVIG 216 (537)
Q Consensus 194 g~~~~f~i---~~~~~~~~~~~~~~~ 216 (537)
||+.-+.+ ......++++..++.
T Consensus 177 gWr~y~~Ln~Isl~s~~~a~~~a~~L 202 (511)
T TIGR00806 177 GWISYSTLNIISLVFMTFSVFLALFL 202 (511)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHhC
Confidence 88875544 344444444444443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.7e-14 Score=149.55 Aligned_cols=171 Identities=9% Similarity=0.101 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhc---cchhH-HHHHHHHHHHHHHH
Q 044175 22 VLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTF---LSRFA-TCLIFGTLEVLALV 97 (537)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~Gr~~-~~~~~~~~~~i~~~ 97 (537)
...+..++.+..+..+++.|+++.+|++..+++.+..+..+...+..|+.|+++||. +|||| .++++.+..+++.+
T Consensus 16 ~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~ 95 (444)
T PRK09669 16 LGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCL 95 (444)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHH
Confidence 344555666666778899999999999999999999999999999999999999992 37754 45567777777766
Q ss_pred HHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHH
Q 044175 98 MITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTL 177 (537)
Q Consensus 98 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 177 (537)
++...+ +... .....++++..++.+.+.........++.+|..++.+ +|.+..++.....++
T Consensus 96 l~f~~p---~~~~----------~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~-----eR~~l~~~r~~~~~~ 157 (444)
T PRK09669 96 LTFYTP---DFGA----------TGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPR-----ERHSLQSWRFALSFI 157 (444)
T ss_pred HHHhCC---CCCc----------chHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHH-----HHHHHHHHHHHHHHH
Confidence 554432 1100 1245566666666676666777777888999875422 277777777777777
Q ss_pred HHHHHHHHHh----hhcc---cccchHHHHHHHHHHHHHH
Q 044175 178 AAVIGVTAIV----YVST---EKAWWGGFLISSIVTFIGF 210 (537)
Q Consensus 178 g~~i~~~~~~----~l~~---~~g~~~~f~i~~~~~~~~~ 210 (537)
|..+++.+.. ++.. ..+|+..+.+.+++..+..
T Consensus 158 G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~ 197 (444)
T PRK09669 158 GGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLF 197 (444)
T ss_pred HHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence 7777665433 2221 2467766665555444433
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.1e-14 Score=149.64 Aligned_cols=148 Identities=17% Similarity=0.101 Sum_probs=116.5
Q ss_pred HHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCC
Q 044175 37 SMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKS 116 (537)
Q Consensus 37 ~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 116 (537)
....++.+++|-+ ....|+.+...+...+..++.|.|+|.+ |||..++.+.++..+|.+.++.+.
T Consensus 65 ~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA~------------- 129 (599)
T PF06609_consen 65 SILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATAQ------------- 129 (599)
T ss_pred HHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcCC-------------
Confidence 4456788889865 6677888999999999999999999995 999999999999999999999774
Q ss_pred CccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcccccch
Q 044175 117 SCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVSTEKAWW 196 (537)
Q Consensus 117 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~ 196 (537)
+...++.+..+.|+|.|.... ....++|..|.+. |...........-.....+|.++..+..+.+||
T Consensus 130 ------~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WR 196 (599)
T PF06609_consen 130 ------NMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKW------RGLGLAIASIPFIITTWISPLIAQLFAAHSGWR 196 (599)
T ss_pred ------cHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHHHHhccCCCcc
Confidence 778899999999999877754 4556899998766 655555444443344445666766666667899
Q ss_pred HHHHHHHHHHHHHHHH
Q 044175 197 GGFLISSIVTFIGFIA 212 (537)
Q Consensus 197 ~~f~i~~~~~~~~~~~ 212 (537)
|.|++..+...++++.
T Consensus 197 w~~~~~~i~~~i~~vl 212 (599)
T PF06609_consen 197 WIFYIFIIWSGIALVL 212 (599)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 9999988766555444
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.5e-14 Score=151.02 Aligned_cols=140 Identities=14% Similarity=0.014 Sum_probs=123.8
Q ss_pred hhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCch
Q 044175 44 NEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGI 123 (537)
Q Consensus 44 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (537)
+..+.+........+++.++..+++++.|+++|| +|||+++++++++..++.++.+++. +
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~-~GRk~~~~~~~~~~~i~~~~~a~a~-------------------~ 170 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDR-FGRKPVLLVSLLLFIIFGILTAFAP-------------------N 170 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhh-cccHHHHHHHHHHHHHHHHHHHHhC-------------------c
Confidence 4566677888999999999999999999999999 5999999999999999998888884 8
Q ss_pred hHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHH
Q 044175 124 AAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVSTEKAWWGGFLISS 203 (537)
Q Consensus 124 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~ 203 (537)
+..+++.|++.|++.++...+...+++|.+++++ |+.+.++ ......++.+++..++++.. +||+.+++..
T Consensus 171 ~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~ 241 (521)
T KOG0255|consen 171 YWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIIS 241 (521)
T ss_pred HHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHH
Confidence 8999999999999999999999999999999888 8888888 77777888888888888876 8999998877
Q ss_pred HHHHHHHHH
Q 044175 204 IVTFIGFIA 212 (537)
Q Consensus 204 ~~~~~~~~~ 212 (537)
+...+.++.
T Consensus 242 ~~~~~~~~~ 250 (521)
T KOG0255|consen 242 IPSGLFLLL 250 (521)
T ss_pred HHHHHHHHH
Confidence 766555444
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.9e-15 Score=145.46 Aligned_cols=149 Identities=13% Similarity=0.029 Sum_probs=134.7
Q ss_pred hcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchh
Q 044175 45 EMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIA 124 (537)
Q Consensus 45 ~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (537)
+++-++.+.|++..++.+.+.+..|+.|.+.|| +|+|-.+++|..+...++++.++.. ++
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~-iGy~ipm~~Gl~vmf~sTilFafg~-------------------sy 159 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDR-IGYKIPMVAGLFVMFLSTILFAFGN-------------------SY 159 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHHH-hccccHHHHHHHHHHHHHHHHHHcc-------------------hh
Confidence 456678899999999999999999999999999 5999999999999999999999874 78
Q ss_pred HHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHH
Q 044175 125 AYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVSTEKAWWGGFLISSI 204 (537)
Q Consensus 125 ~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~ 204 (537)
++++++|.+||+|.+....+..++++|.||+++. |+++++..-....+|-.+||..+|.+-+..|.+.+|++.+.
T Consensus 160 ~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~ 234 (464)
T KOG3764|consen 160 PMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAI 234 (464)
T ss_pred HHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHH
Confidence 8999999999999999999999999999997763 89999998889999999999999999999999999999888
Q ss_pred HHHHHHHHHHhccc
Q 044175 205 VTFIGFIALVIGKP 218 (537)
Q Consensus 205 ~~~~~~~~~~~~~~ 218 (537)
++++...+.++..+
T Consensus 235 v~Lld~~L~l~vi~ 248 (464)
T KOG3764|consen 235 VLLLDGALQLLVIE 248 (464)
T ss_pred HHHHHHHHHHheeC
Confidence 88777666555433
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.1e-14 Score=149.54 Aligned_cols=179 Identities=13% Similarity=0.052 Sum_probs=130.5
Q ss_pred CcchH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccc-----hhHHHH
Q 044175 13 GFRAC-GFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLS-----RFATCL 86 (537)
Q Consensus 13 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G-----r~~~~~ 86 (537)
+++.. ..+....+.+.+. +.+...+..++++++|+++++.+...+...+...+-++ .|.++||+ + ||+.+.
T Consensus 23 ~~~~~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~ 99 (468)
T TIGR00788 23 HPRVVLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLV 99 (468)
T ss_pred CcchHHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHH
Confidence 34433 4445467777777 77777888899999999999999998888888877555 99999995 8 777778
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhh
Q 044175 87 IFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALAS 166 (537)
Q Consensus 87 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 166 (537)
++.++.. ...+..++.. ........+.+++.+++.+......-++..|..+ ++++ .++.
T Consensus 100 ~~~~l~~-~~~~~~l~~~----------------~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~---~~~~ 158 (468)
T TIGR00788 100 LSGLLGS-AILYGLLPGK----------------VSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS---AGPS 158 (468)
T ss_pred HHHHHHH-HHHHHhcccc----------------cchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC---cCCC
Confidence 8776653 1222222210 1123344457788999999999999999999998 4422 1455
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHh
Q 044175 167 YFNYFLLTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVI 215 (537)
Q Consensus 167 ~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~ 215 (537)
..++.|.+.++|..+++.++|.+.+..+|+..|++.+.+.++..+...+
T Consensus 159 ~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~ 207 (468)
T TIGR00788 159 LVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNL 207 (468)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHh
Confidence 6667777788999999999999998889999998877766555443333
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-14 Score=151.82 Aligned_cols=355 Identities=14% Similarity=0.097 Sum_probs=213.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhh----hccchhHHHH-HHHHHHHHHHHHH
Q 044175 25 SLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISD----TFLSRFATCL-IFGTLEVLALVMI 99 (537)
Q Consensus 25 ~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD----~~~Gr~~~~~-~~~~~~~i~~~l~ 99 (537)
+...+.+.....++..|+++.+|+++...+.+..+..+...+..|+.|+++| | +||||-.+ ++.++.+++.+++
T Consensus 11 ~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr-~Grrrp~~l~g~i~~~~~~~ll 89 (428)
T PF13347_consen 11 LGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTR-WGRRRPWILIGAILLALSFFLL 89 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeeccc-ccccceEeehhhHHHHHHHHHh
Confidence 4444555556678889999999999999999999999999999999999999 7 59777655 5677788877777
Q ss_pred HHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHH
Q 044175 100 TVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAA 179 (537)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 179 (537)
..... .++. ......++.+..++..++.........++.+|..+++++ |.+..++......+|.
T Consensus 90 f~~~p-~~~~----------~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~-----R~~l~~~~~~~~~~g~ 153 (428)
T PF13347_consen 90 FSPPP-AGLS----------FTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE-----RTRLSSWRMIFSMIGS 153 (428)
T ss_pred hcccc-chhh----------hhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhh-----hhhHHHHHHHHHHHHH
Confidence 65410 0100 012344556777778899999999999999999875431 7777777777777777
Q ss_pred HHHHHHHhhhcc----c---ccchHHHHHHHHHHHHHHHHHHhccccccccCCCCCchhhHHHHHHHHHHhccCCCCCCh
Q 044175 180 VIGVTAIVYVST----E---KAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQVVVVAIKNRKLSLPENP 252 (537)
Q Consensus 180 ~i~~~~~~~l~~----~---~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 252 (537)
.+...+.+.+.+ . .+|++...+.+++..+..++..+..|+.+++.++++
T Consensus 154 ~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~------------------------ 209 (428)
T PF13347_consen 154 LLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQE------------------------ 209 (428)
T ss_pred HHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeeccccccccc------------------------
Confidence 655555544432 1 157777666666555554444443333000000000
Q ss_pred hhhhhhhhhhccCCccccCCCCchhHhhhhccCCCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHhhhhcchh
Q 044175 253 EELYEINEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVKILTRMMPILASTILMNTCLAQLQTF 332 (537)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 332 (537)
++.+..+ .++... + .|.....+ ....+.+.......+.
T Consensus 210 ---------------~~~~~~~-------------------~~~~~~----~-nr~~~~l~---~~~~~~~~~~~~~~~~ 247 (428)
T PF13347_consen 210 ---------------KKISLRD-------------------SLRSLF----R-NRPFRILL---LAFFLQWLAFALMNTF 247 (428)
T ss_pred ---------------ccccccc-------------------chhhhc----c-cchHHHHH---HHHHHHHhhhhhhhhH
Confidence 0000000 000000 0 01111111 1111112211111111
Q ss_pred hheeccc-cCCCCCccccCCCcccccchHhHHHHhhhhcchhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 044175 333 SVTQGAY-MDPQLGSIKVPTPSIPVIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVE 411 (537)
Q Consensus 333 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~ 411 (537)
..+.... .+.. ...+.+.....+..++..|+..++.+++.+| +.+..+..+.+++.++..+..
T Consensus 248 ~~y~~~~vl~~~-----~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~-----------~~~~~~~~~~~~~~~~~~~~~ 311 (428)
T PF13347_consen 248 LPYYFTYVLGNE-----GLISIFMLIFFVASIVGSPLWGRLSKRFGKK-----------KVYIIGLLLAALGFLLLFFLG 311 (428)
T ss_pred HHHHHHHHhcCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHccce-----------eehhhhHHHHHHHHHHHHHHH
Confidence 1111111 1111 0112223344555566666666644433322 345667777777766655542
Q ss_pred HHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccC-------cchhHHHHHHHHHHHHHHHHHHHHHH
Q 044175 412 VQRRNAFNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAP-------AGMRTLSTSFTFLSLSFGNFLSSVFV 484 (537)
Q Consensus 412 ~~~~~~~~~~g~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~g~~~~~~~~g~~~~~~l~ 484 (537)
+.+.++..+..++.+++.+...+..+++..|..+ ++..|...|++++...++..++..+.
T Consensus 312 -------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~ 378 (428)
T PF13347_consen 312 -------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIV 378 (428)
T ss_pred -------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHH
Confidence 1245667777889999999988888999888877 45579999999999999999999988
Q ss_pred HHhhhhh
Q 044175 485 DIINAVT 491 (537)
Q Consensus 485 ~~i~~~~ 491 (537)
+.+....
T Consensus 379 g~~l~~~ 385 (428)
T PF13347_consen 379 GLLLALV 385 (428)
T ss_pred HHHHHHh
Confidence 8776554
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.3e-20 Score=194.73 Aligned_cols=137 Identities=16% Similarity=0.155 Sum_probs=113.3
Q ss_pred hhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHH
Q 044175 51 AGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYAS 130 (537)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (537)
.+.+++.+...++..++.+++|+++||+ |||++++++.++..++.++..+++. ..+...+.++
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~----------------~~~~~~~~~~ 108 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPS----------------YNNFWMLLIG 108 (451)
T ss_pred HHHHHHHHHHHhhhcccccccccccccc-ccccccccccccccccccccccccc----------------cccccccccc
Confidence 3467889999999999999999999995 9999999999999999999988741 0157889999
Q ss_pred HHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcc---cccchHHHHHHHHHHH
Q 044175 131 LCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVST---EKAWWGGFLISSIVTF 207 (537)
Q Consensus 131 ~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~---~~g~~~~f~i~~~~~~ 207 (537)
|+++|++.|+..+..+.++.|..|++. |+...++......+|..++..++..+.. ..+||..+.++.+..+
T Consensus 109 R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l 182 (451)
T PF00083_consen 109 RFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSL 182 (451)
T ss_pred ccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999888 8888888887788888877766544432 2459998887776554
Q ss_pred HHH
Q 044175 208 IGF 210 (537)
Q Consensus 208 ~~~ 210 (537)
+..
T Consensus 183 ~~~ 185 (451)
T PF00083_consen 183 LVL 185 (451)
T ss_pred ccc
Confidence 333
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-13 Score=141.52 Aligned_cols=176 Identities=13% Similarity=0.031 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHH--HHHHHHHHHHHhhHh-HHHhhhccchhHHHHHHHHHHH
Q 044175 17 CGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNT--LTNLMGSTFLLCLVG-GFISDTFLSRFATCLIFGTLEV 93 (537)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~-G~laD~~~Gr~~~~~~~~~~~~ 93 (537)
...+...-+...+.+....+.++.|++ +.|.+.++.|.+ .........+..|+. ++.+||+ ||||..++.+.+..
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~ 80 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLV 80 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHH
Confidence 345566667777777777788888886 569999999997 355567776777777 6689995 99999766653322
Q ss_pred H-HHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHH
Q 044175 94 L-ALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFL 172 (537)
Q Consensus 94 i-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 172 (537)
. ....+.... +. .....++.....+.++..+...+...++..|..++++ ++...+...
T Consensus 81 ~~~~~~~~~~~--~~-------------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------~~~~~~~~~ 139 (390)
T TIGR02718 81 SACLASLALVG--PD-------------VAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT------LAKGNAVQI 139 (390)
T ss_pred HHHHHHHHcCC--cc-------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hhHHHHHHH
Confidence 2 222222111 00 0122333444445556666666666666666655444 565666666
Q ss_pred HHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHh
Q 044175 173 LTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVI 215 (537)
Q Consensus 173 ~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~ 215 (537)
.+..+|..+++...+++.+..||+..|++.++..++..+..+.
T Consensus 140 ~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~ 182 (390)
T TIGR02718 140 AGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLW 182 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 6778899999988888888899999999887766555444433
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.7e-13 Score=137.70 Aligned_cols=385 Identities=11% Similarity=0.083 Sum_probs=201.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHH
Q 044175 20 IFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMI 99 (537)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~ 99 (537)
+....++..+.+-...++++.|+++ .|+|..|.|.+.+...+...+.+++.|+++||...+||.+.++.++.++...+.
T Consensus 7 Ls~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~ 85 (400)
T PF03825_consen 7 LSLMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLL 85 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4445555556655667889999975 679999999999999999999999999999996347777777766666655444
Q ss_pred HHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHH
Q 044175 100 TVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAA 179 (537)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 179 (537)
... ++.+.+++..++..+......|...++..+...+++ .+-.|-|.. .++|-
T Consensus 86 ~~~-------------------~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~~--~~YG~iRlw------GSiGf 138 (400)
T PF03825_consen 86 AFS-------------------SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGDRG--KDYGRIRLW------GSIGF 138 (400)
T ss_pred HHh-------------------ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccc--CCCCcchhh------hhHHH
Confidence 443 255666666777777777777777777666654321 111133333 34444
Q ss_pred HHHHHH-Hhhhcccc---cchHHHHHHHHHHHHHHHHHHhccccccccCCCCCchhhHHHHHHHHHHhccCCCCCChhhh
Q 044175 180 VIGVTA-IVYVSTEK---AWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQVVVVAIKNRKLSLPENPEEL 255 (537)
Q Consensus 180 ~i~~~~-~~~l~~~~---g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 255 (537)
.++... ++++.... +....+++.+....+..... +..|+.+.++..+++.+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~-l~lp~~~~~~~~~~~~~------------------------ 193 (400)
T PF03825_consen 139 IVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFA-LFLPKTPPKRSAKESVK------------------------ 193 (400)
T ss_pred HHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHH-HhCCCCccccccCCCcc------------------------
Confidence 433222 12222222 22334454443332222211 12222111000000000
Q ss_pred hhhhhhhccCCccccCCCCchhHhhhhccCCCCCCCCCCcccccchhHHHHHHHHhH-HHHHHHHHHHHHhhhhcchhhh
Q 044175 256 YEINEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVKILTRM-MPILASTILMNTCLAQLQTFSV 334 (537)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~ 334 (537)
+. ...| .|+.+ .+ |+.... +..++....... +..+.+.+.
T Consensus 194 -------------~~------~~~~-------------~~~ll-----k~-~~~~~Fll~~~l~~~~~~~-~~~f~~~yl 234 (400)
T PF03825_consen 194 -------------KL------LGLD-------------ALKLL-----KN-PRFLVFLLAAFLIGISHAA-YYTFFSIYL 234 (400)
T ss_pred -------------cc------cchH-------------HHHHh-----cC-ccHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 00 0000 00000 00 111111 111111111111 111222222
Q ss_pred eeccccCCCCCccccCCCcccccchHhHHHHhhhhcchhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 044175 335 TQGAYMDPQLGSIKVPTPSIPVIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVEVQR 414 (537)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~ 414 (537)
.+..+.. ...... ....+.+.|....-..+|..+| .+..+.+.++.+..++=..+++...
T Consensus 235 ~~~gg~~---------~~~~g~-----~~~l~~~aEi~~f~~~~~~~~r---~g~~~ll~~a~~~~~vR~~l~a~~~--- 294 (400)
T PF03825_consen 235 QELGGYS---------GSTIGI-----LWALGVVAEIPFFFFSGRFLKR---FGIKWLLLLALVAYAVRWLLYAYFS--- 294 (400)
T ss_pred HHcccch---------hhHHHH-----HHHHHHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 2111111 000011 1111222232222222333222 3566667777766666555555431
Q ss_pred hhhhccCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchhHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhcc
Q 044175 415 RNAFNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLS-LSFGNFLSSVFVDIINAVTKR 493 (537)
Q Consensus 415 ~~~~~~~g~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~-~~~g~~~~~~l~~~i~~~~~~ 493 (537)
++ .+..+..+.+..++.|+..++...+...|+.+.+|++.|++++++++.. .++|..+|..+.+.+.+..+.
T Consensus 295 -----~~--~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~ 367 (400)
T PF03825_consen 295 -----DP--WPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGA 367 (400)
T ss_pred -----CC--cHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcc
Confidence 00 0111222334456799999999999999999999999999999998875 679999999999987744322
Q ss_pred CCCCCCCCccCCCCCCchhHHHHHHHHHHHHHHHHHHhhhccc
Q 044175 494 ITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYLYAAAW 536 (537)
Q Consensus 494 ~~~~~~~w~~~~~l~~~~~~~~f~~~~~l~~~~~v~~~~~~~~ 536 (537)
++ .-.+..+|.+.+++.++..++++++.|+
T Consensus 368 --~~-----------~~~~~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 368 --RG-----------MFDWSAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred --hh-----------hhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 00 0123345667777777777777777664
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-14 Score=157.83 Aligned_cols=199 Identities=14% Similarity=0.150 Sum_probs=150.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHH
Q 044175 13 GFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLE 92 (537)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~ 92 (537)
.+|.+.+.+....+....+.+.......-+.++++++..+.|++.+.+.+++.++.++.|+++||+ ||||.+.++.+++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~ll~ 108 (633)
T TIGR00805 30 KIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCAIM 108 (633)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHHHH
Confidence 345444444445555555666677777788899999999999999999999999999999999995 9999999999999
Q ss_pred HHHHHHHHHHhhccccC----------------CCCCC------------CCCccCCc----hhHHHHHHHHHHHHhccc
Q 044175 93 VLALVMITVQAYSEKLH----------------PPDCG------------KSSCVKGG----IAAYFYASLCLYALGSGG 140 (537)
Q Consensus 93 ~i~~~l~~~~~~~~~~~----------------~~~~~------------~~~~~~~~----~~~~~~~~~~l~g~g~g~ 140 (537)
++|.+++++......-+ +..|. ++.|.+.. ...+++++|+++|+|.+.
T Consensus 109 ~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~ 188 (633)
T TIGR00805 109 GLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATP 188 (633)
T ss_pred HHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCc
Confidence 99999988753111000 00110 00222212 356788999999999999
Q ss_pred ccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcccc----------------------cchHH
Q 044175 141 VRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVSTEK----------------------AWWGG 198 (537)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~----------------------g~~~~ 198 (537)
..+...+++.|.+|+++ |+..+++++.+..+|.++|+++++++.+.+ +||..
T Consensus 189 ~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~ 262 (633)
T TIGR00805 189 IFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIG 262 (633)
T ss_pred chhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHH
Confidence 99999999999999888 899999999999999999999999876532 27778
Q ss_pred HHHHHHHHHHHHHHHHhccc
Q 044175 199 FLISSIVTFIGFIALVIGKP 218 (537)
Q Consensus 199 f~i~~~~~~~~~~~~~~~~~ 218 (537)
|++.+++.++..+.++...+
T Consensus 263 Fli~g~l~~l~~v~l~~~p~ 282 (633)
T TIGR00805 263 FLICGGVALLTSIPFFFFPK 282 (633)
T ss_pred HHHHHHHHHHHHHHHHhCcc
Confidence 88877666555554444433
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-12 Score=139.10 Aligned_cols=171 Identities=13% Similarity=0.017 Sum_probs=124.3
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHH
Q 044175 13 GFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLE 92 (537)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~ 92 (537)
+|..+.....+..+.... |+. ......+++++|++..+.+++.++.. ....+.++.|+++||+ |||+++.++.+++
T Consensus 26 Rw~~lva~~~~~~~~g~~-y~f-sv~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~-G~R~vllig~ll~ 101 (591)
T PTZ00207 26 RFALLVLGAFCSICTSFM-YAF-NLISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYL-GPRPIFVLSMTVF 101 (591)
T ss_pred hHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHh-CcHHHHHHHHHHH
Confidence 333333334444444333 333 34455678999999999999887744 3446777899999995 9999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHH
Q 044175 93 VLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFL 172 (537)
Q Consensus 93 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 172 (537)
.+|.++++++.. ... ..+.+.+++.|++.|+|.+...+.....+.++|| ++ |+++.++..
T Consensus 102 ~iG~ll~ala~~--~~i-----------~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~------RG~a~Gi~~ 161 (591)
T PTZ00207 102 CLGTLLFALTFQ--EVI-----------EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN------RGAVVAIMK 161 (591)
T ss_pred HHHHHHHHHHhc--ccc-----------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh------hHHHHHHHH
Confidence 999999988631 000 1367889999999999999988888889999997 44 899999999
Q ss_pred HHHHHHHHH-HHHHHhhhcccccchHHHHHHHHHHHHH
Q 044175 173 LTTTLAAVI-GVTAIVYVSTEKAWWGGFLISSIVTFIG 209 (537)
Q Consensus 173 ~~~~~g~~i-~~~~~~~l~~~~g~~~~f~i~~~~~~~~ 209 (537)
.+..+|+++ +++..+++. .+|+..|++.++..++.
T Consensus 162 ~~~gLGsaI~~~l~~~l~~--~~~~~~fl~l~vl~~vv 197 (591)
T PTZ00207 162 TFTGLGSAILGSIQLAFFS--DNTSAYFFFLMSFALVV 197 (591)
T ss_pred HHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHH
Confidence 999999875 555566554 35666666655554443
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-12 Score=126.61 Aligned_cols=364 Identities=12% Similarity=0.141 Sum_probs=230.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHH
Q 044175 20 IFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMI 99 (537)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~ 99 (537)
++++.+--|-..-++ ..+..-+++++|+|.+++|.+++.-.+...+..++..+|+.|+ |.++.+..++++.++|.++-
T Consensus 17 Ivlia~NLR~~itsv-gPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~~G~~iR 94 (395)
T COG2807 17 IVLIAFNLRPAITSV-GPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIAAGILIR 94 (395)
T ss_pred HHHHHhccchhhhhh-hhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHHHHHHHH
Confidence 333334444443333 3344566789999999999999999999999999999999995 99999999999999999887
Q ss_pred HHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHH
Q 044175 100 TVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAA 179 (537)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 179 (537)
... +...++.+-.+.|.|.+......|..+-+.||++. +..++.+..+.++|+
T Consensus 95 ~~~--------------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~-------~~mtglYs~sl~~~a 147 (395)
T COG2807 95 SLG--------------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV-------GLMTGLYSTSLGAGA 147 (395)
T ss_pred hcc--------------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccch-------hhHHhHHHHHHHHHH
Confidence 764 45678889999999999999999999999999654 778888888999999
Q ss_pred HHHHHHHhhhcccc-cchHHHHHHHHHHHHHHHHHHhccccccccCCCCCchhhHHHHHHHHHHhccCCCCCChhhhhhh
Q 044175 180 VIGVTAIVYVSTEK-AWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQVVVVAIKNRKLSLPENPEELYEI 258 (537)
Q Consensus 180 ~i~~~~~~~l~~~~-g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (537)
++++.++..+.++. ||+....+-+...+++++.++....+.+....+++
T Consensus 148 aLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq~~r~~~~~~~~~------------------------------ 197 (395)
T COG2807 148 ALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQALREQAASIATK------------------------------ 197 (395)
T ss_pred HHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhhcccccccccccc------------------------------
Confidence 99999888888776 79998877777777777776644211110000000
Q ss_pred hhhhccCCccccCCCCchhHhhhhccCCCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHhhhhcchhhheecc
Q 044175 259 NEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVKILTRMMPILASTILMNTCLAQLQTFSVTQGA 338 (537)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 338 (537)
.. + +..-|++ .......+.+.+....+|..+.+++..+..+.
T Consensus 198 ----------~~---~----------------~~~vw~~--------~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G- 239 (395)
T COG2807 198 ----------LV---S----------------VRKVWRS--------PLAWQVTLFMGLQSLLYYIVIGWLPAILIDRG- 239 (395)
T ss_pred ----------cc---c----------------ccccccC--------chhHHHHHHHHhhHHHHHHHHHHHHHHHHHcC-
Confidence 00 0 0012221 11122345555667777888888877665442
Q ss_pred ccCCCCCccccCCCcccccchHh---HHHHhhhhcchhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044175 339 YMDPQLGSIKVPTPSIPVIPLLF---MSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVEVQRR 415 (537)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~---~ii~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~ 415 (537)
++.. ..+.+-.+..+. .-+.+|+.. +|.. +..........++.++...+.+...+
T Consensus 240 -~sa~------~aG~llsl~~l~~~~~~ll~P~la-------~R~~------n~r~~~~~~~~~~l~G~~G~~~~P~~-- 297 (395)
T COG2807 240 -LSAA------EAGSLLSLMQLAQLPTALLIPLLA-------RRSK------NQRPLVVLALLLMLVGLVGLLLAPGQ-- 297 (395)
T ss_pred -CCHH------HhhhHHHHHHHHHHHHHHHHHHHH-------HHhc------ccchHHHHHHHHHHHHHHHHHHhhhh--
Confidence 2211 122222222222 222223322 2221 23334444555555665554443211
Q ss_pred hhhccCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCcch-hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 044175 416 NAFNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGM-RTLSTSFTFLSLSFGNFLSSVFVDIINAVTKRI 494 (537)
Q Consensus 416 ~~~~~~g~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~-rg~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~ 494 (537)
..++| .+++|+|.+..+|....++...+.+.. -+.-.|+.+....+-..+||.+.+.+-|.++
T Consensus 298 ----------~~~lw----~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g-- 361 (395)
T COG2807 298 ----------LPILW----ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG-- 361 (395)
T ss_pred ----------HHHHH----HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC--
Confidence 22333 378899999999999999888766443 3444555555555555668888888776653
Q ss_pred CCCCCCCccCCCCCCchhHHHHHHHHHHHHHHHHHHhhhc
Q 044175 495 TPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYLYAA 534 (537)
Q Consensus 495 ~~~~~~w~~~~~l~~~~~~~~f~~~~~l~~~~~v~~~~~~ 534 (537)
+|... ...+...+++..+.-+...
T Consensus 362 -----sw~~~-----------~~~l~~~~i~m~i~Gl~a~ 385 (395)
T COG2807 362 -----SWSAP-----------LVLLALATLLMLIFGLRAG 385 (395)
T ss_pred -----ChHHH-----------HHHHHHHHHHHHHHHhhcc
Confidence 36443 5555555555555444433
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.6e-13 Score=136.65 Aligned_cols=387 Identities=10% Similarity=0.036 Sum_probs=206.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHH-
Q 044175 15 RACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEV- 93 (537)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~- 93 (537)
+..+......+.-.+.+-...++.+.|++++.|++.+++|.+.++..+...+.+|+.|.++||. |.||-+++......
T Consensus 7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~~l~~ 85 (412)
T PF01306_consen 7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIAILLL 85 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHHHHHH
Confidence 4556666666666666666779999999998999999999999999999999999999999995 97776555433322
Q ss_pred -HHHHHHH-HHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHH
Q 044175 94 -LALVMIT-VQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYF 171 (537)
Q Consensus 94 -i~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 171 (537)
.+.+... ..+. ++ .+ +.++-++.++..+.......+. .|.+-++.++ +.+-=++-.
T Consensus 86 l~~pff~~v~~pl---l~------------~n---~~lg~iig~i~l~~~f~~~~~~-~Ea~~er~sr---~~~feYG~~ 143 (412)
T PF01306_consen 86 LFGPFFIYVFGPL---LQ------------SN---FWLGAIIGGIYLGLVFNAGVPL-SEAYAERVSR---RNGFEYGRA 143 (412)
T ss_dssp TCHHHHHHTHHHH---HH------------TT----HHHHHHTTTTTTTTTTTHHHH-HHHHHHHHHH---HHSS-HHHH
T ss_pred HHHHHHHHHHHHH---HH------------HH---HHHHHHHHHHHHHHHHcccchH-HHHHHHHHHH---HhcCCcchH
Confidence 2333322 2210 00 01 2223233333333333333222 1333222111 112223334
Q ss_pred HHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHhccccccccCCCCCchhhHHHHHHHHHHhccCCCCCC
Q 044175 172 LLTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQVVVVAIKNRKLSLPEN 251 (537)
Q Consensus 172 ~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 251 (537)
.....+|.+++..++|++.+ .+-+..|+++....++..++.+..+++.+++.+..+.
T Consensus 144 R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~---------------------- 200 (412)
T PF01306_consen 144 RMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADA---------------------- 200 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTT----------------------
T ss_pred HHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcc----------------------
Confidence 45678898999999998876 3446677776655444444444443321111100000
Q ss_pred hhhhhhhhhhhccCCccccCCCCchhHhhhhccCCCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHhhhhcch
Q 044175 252 PEELYEINEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVKILTRMMPILASTILMNTCLAQLQT 331 (537)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 331 (537)
+ . .+ .++.+..|-. ++-..|+++....+.......+..+.|+.+
T Consensus 201 ------------~-~-~~---~~~~~~~~~~-------------------~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~ 244 (412)
T PF01306_consen 201 ------------L-G-AK---KDKVSLKDVL-------------------SLFKMRNFWFFVLFVIGVAAIYDVFDQQFP 244 (412)
T ss_dssp ------------S-S-S---------HHHHH-------------------HHTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------c-c-cC---CCCCcHHHHH-------------------HHhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 00 0000000000 000112233233323333333344433333
Q ss_pred -hhheeccccCCCCCccccCCCcccccchHhHH---HHhhhhcchhccccccccCCCCCCCchHHHHHHHHHHHHHHHHH
Q 044175 332 -FSVTQGAYMDPQLGSIKVPTPSIPVIPLLFMS---ILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIA 407 (537)
Q Consensus 332 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---i~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~ 407 (537)
++..+.... +..+..+..++.+.++ +...+..+ +.+|. ++.+.+.++..++++=....
T Consensus 245 ~y~~~~f~~~-------~~g~~~~G~l~s~~v~~E~~~m~~~p~----li~ri-------g~k~~Lllag~i~~iRi~~~ 306 (412)
T PF01306_consen 245 IYFASFFQSA-------GQGNQMYGYLWSVQVFLEALMMFFSPW----LINRI-------GAKNLLLLAGVIMAIRIIGS 306 (412)
T ss_dssp HHHHHTSSSH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH--------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccc-------ccChhHHhHHHHHHHHHHHHHHHHHHH----HHHhc-------ChHhHHHHHHHHHHHHHHHH
Confidence 222111100 0111112222222222 11122222 23442 55666777766777666666
Q ss_pred HHHHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchhHHHHHHH-HHHHHHHHHHHHHHHHH
Q 044175 408 GFVEVQRRNAFNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFT-FLSLSFGNFLSSVFVDI 486 (537)
Q Consensus 408 ~~~~~~~~~~~~~~g~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~-~~~~~~g~~~~~~l~~~ 486 (537)
++. .+.+++++.-.+.++-..+......-|+.+.+|+++.++...+. ++..+++..+.+.+.+.
T Consensus 307 ~~~---------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~ 371 (412)
T PF01306_consen 307 GFA---------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGY 371 (412)
T ss_dssp HT-----------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred hhh---------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHh
Confidence 653 45677888889999999899999999999999999998888874 68888999988777776
Q ss_pred hhhhhccCCCCCCCCccCCCCCCchhHHHHHHHHHHHHHHHHHHhhhcc
Q 044175 487 INAVTKRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYLYAAA 535 (537)
Q Consensus 487 i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~~~~~l~~~~~v~~~~~~~ 535 (537)
+.+. .|++..|++++++.++..++-.+..+
T Consensus 372 lyd~-------------------~G~~~tylimg~iv~~~~li~~f~l~ 401 (412)
T PF01306_consen 372 LYDR-------------------IGFQHTYLIMGLIVLPFTLISAFTLK 401 (412)
T ss_dssp HHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred hHhh-------------------cCcHHHHHHHHHHHHHHHHHheeeec
Confidence 5532 34556788888888777766665544
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-13 Score=144.13 Aligned_cols=174 Identities=15% Similarity=0.127 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHH
Q 044175 18 GFIFVLSSLENMGFIANAIS---MVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVL 94 (537)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~---~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i 94 (537)
|++++..+..++..+++..- +-..++++++-+..+++|+.++......+..|+.+.+.||+ |.|++.+.|.++..+
T Consensus 45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~~ 123 (509)
T KOG2504|consen 45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAAL 123 (509)
T ss_pred eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHHH
Confidence 77777777777777776643 34456788999999999999999999999999999999995 999999999999999
Q ss_pred HHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHH-HHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHH
Q 044175 95 ALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASL-CLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLL 173 (537)
Q Consensus 95 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 173 (537)
|.++..++. +.+.+++.. ++.|+|.|+++......++.+|++ + |+.+.+....
T Consensus 124 g~~lssF~~-------------------~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~k-k------R~lA~Gia~~ 177 (509)
T KOG2504|consen 124 GLLLSSFAT-------------------SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEK-K------RALATGIAVS 177 (509)
T ss_pred HHHHHHHHh-------------------hHHHHHHHHHHHhhccchhhhcchhhhhhhHhHH-H------HHHHHhhhhc
Confidence 999999985 566666665 679999999999999999977763 3 7888888777
Q ss_pred HHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHhccc
Q 044175 174 TTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKP 218 (537)
Q Consensus 174 ~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~ 218 (537)
...+|..+-|.+..++.+.+|||..+++-..+.+-.+......+|
T Consensus 178 GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 178 GTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP 222 (509)
T ss_pred cCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 778898888889999999999999988766665444444444444
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.8e-14 Score=138.83 Aligned_cols=119 Identities=13% Similarity=0.114 Sum_probs=91.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHH
Q 044175 47 HFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAY 126 (537)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (537)
|+++.-.+.+..+..++..+++++.||++||+ |||+++...+++.+++++.+++.-. ..+| ..-..+
T Consensus 80 ~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK~vYG~~liImIi~t~~~~~s~~---~~~~---------~~~m~~ 146 (538)
T KOG0252|consen 80 HYPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRKKVYGKELIIMIICSALSGLSVG---TTSP---------LGVMMT 146 (538)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhHHHHHHHHHHHHhccCCC---CCCC---------cchhhH
Confidence 36677788899999999999999999999995 9999999999999999996655421 0100 124578
Q ss_pred HHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 044175 127 FYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVT 184 (537)
Q Consensus 127 ~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~ 184 (537)
+...|+++|+|.|+-+|...+..+|...++. |+...+.......+|...|.+
T Consensus 147 L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~------RGa~iaavFa~Qg~GilaG~i 198 (538)
T KOG0252|consen 147 LCFFRFLLGIGIGGDYPLSATIMSESANKKT------RGAFIAAVFAMQGFGILAGGI 198 (538)
T ss_pred HHHHHHHhhccccCCCcchHHHhhhhhhhcc------ccceeEEEEEecchhHhhccH
Confidence 8899999999999999999999999877666 666665544444444444433
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-12 Score=125.08 Aligned_cols=159 Identities=12% Similarity=-0.023 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHH
Q 044175 17 CGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLAL 96 (537)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~ 96 (537)
.........++-.........+.+-++...|.+..+...+......+..+++...|.++|++ ||||...+..+...+..
T Consensus 79 l~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~ 157 (528)
T KOG0253|consen 79 LFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFG 157 (528)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHH
Confidence 34455555666666666666677777888999999999999999999999999999999995 99999988877766666
Q ss_pred HHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHH
Q 044175 97 VMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTT 176 (537)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 176 (537)
.+-..++ ++..+++.|.+.|+|.|+ .|...++-.|..|... |....-.. ....
T Consensus 158 ~is~~sp-------------------nf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~wa 210 (528)
T KOG0253|consen 158 VISGASP-------------------NFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWA 210 (528)
T ss_pred HhhcCCC-------------------CeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHH
Confidence 6555543 678899999999999999 8999999999988655 44433332 3345
Q ss_pred HHHHHHHHHHhhhcccccchHHHHHHH
Q 044175 177 LAAVIGVTAIVYVSTEKAWWGGFLISS 203 (537)
Q Consensus 177 ~g~~i~~~~~~~l~~~~g~~~~f~i~~ 203 (537)
+|.++.-.++-.+....|||+......
T Consensus 211 ig~v~ea~law~vm~~~gwr~~l~~~~ 237 (528)
T KOG0253|consen 211 IGQVFEALLAWGVMSNFGWRYLLFTSS 237 (528)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 666666555544556679998655444
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.5e-12 Score=133.73 Aligned_cols=150 Identities=15% Similarity=0.099 Sum_probs=125.6
Q ss_pred hhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCc
Q 044175 43 KNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGG 122 (537)
Q Consensus 43 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 122 (537)
+++++....+.+.+.++|.+++.++.+++|.|.||+ .-.+.+....+.+.+-.++.... .
T Consensus 73 ~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~-------------------~ 132 (495)
T KOG2533|consen 73 KEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAV-------------------H 132 (495)
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHH-------------------h
Confidence 467889999999999999999999999999999995 97777777666666555554443 2
Q ss_pred hhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhh------cccccch
Q 044175 123 IAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYV------STEKAWW 196 (537)
Q Consensus 123 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l------~~~~g~~ 196 (537)
+.+.+++.|++.|+.++..+|....+++.++.+++ |+..+++++.+..+|.++|.+++..+ ....|||
T Consensus 133 s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~ 206 (495)
T KOG2533|consen 133 SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWR 206 (495)
T ss_pred hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCce
Confidence 78899999999999999999999999999999888 99999999999999999999988775 3457999
Q ss_pred HHHHHHHHHHHHHHHHHHhccc
Q 044175 197 GGFLISSIVTFIGFIALVIGKP 218 (537)
Q Consensus 197 ~~f~i~~~~~~~~~~~~~~~~~ 218 (537)
+.|++.+++.++..++.++..|
T Consensus 207 ~~FiI~G~i~~~~gi~~f~~lp 228 (495)
T KOG2533|consen 207 WLFIIEGVITLVLGIVVFFFLP 228 (495)
T ss_pred eehhHHHHHHHHHHheEEEEec
Confidence 9999988877666555544433
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.2e-11 Score=127.90 Aligned_cols=149 Identities=11% Similarity=0.066 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhh---ccchhHHHH-HHHHHHHHHHH
Q 044175 22 VLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDT---FLSRFATCL-IFGTLEVLALV 97 (537)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~---~~Gr~~~~~-~~~~~~~i~~~ 97 (537)
...+..++.+..+..++..|+++.+|+++..+|.+..+.-+.-.+.-|+.|+++|| .+||||..+ ++.+..+++.+
T Consensus 16 ~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~ 95 (460)
T PRK11462 16 MGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCV 95 (460)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHH
Confidence 44555666666677889999999999999999999999999999999999999997 259877665 45677777776
Q ss_pred HHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHH
Q 044175 98 MITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTL 177 (537)
Q Consensus 98 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 177 (537)
++...+ .+.. .....++.+.-++..++.........++.+|..++.+ +|.+..++.....++
T Consensus 96 llf~~p---~~s~----------~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~-----eRt~l~s~r~~~~~i 157 (460)
T PRK11462 96 LAYSTP---DLSM----------NGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPT-----QRISLQSWRFVLATA 157 (460)
T ss_pred HHHhCC---CCCc----------chHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHH-----HHHHHHHHHHHHHHH
Confidence 665432 1110 1234556666667788888888888899999877432 288888888888888
Q ss_pred HHHHHHHHHhh
Q 044175 178 AAVIGVTAIVY 188 (537)
Q Consensus 178 g~~i~~~~~~~ 188 (537)
|..+++.+...
T Consensus 158 G~~~~~~~~~p 168 (460)
T PRK11462 158 GGMLSTVLMMP 168 (460)
T ss_pred HHHHHHHHHHH
Confidence 87777665433
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.5e-13 Score=140.44 Aligned_cols=179 Identities=15% Similarity=0.137 Sum_probs=131.1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHH
Q 044175 13 GFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLE 92 (537)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~ 92 (537)
+++.........++..+.+|++..+++.|+++.+|++..+.+.......++..++.+++|+++||+ |||+++..+.+..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~ 326 (490)
T PRK10642 248 HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVAL 326 (490)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence 344444444455667788999999999999988999988888888888889999999999999995 9999998887655
Q ss_pred HHHHHHHH-HHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHH
Q 044175 93 VLALVMIT-VQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYF 171 (537)
Q Consensus 93 ~i~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 171 (537)
.++...+. ... ..+...+++++++.+++.+...+....++.|.+|++. |+++++..
T Consensus 327 ~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~------Rg~~~g~~ 383 (490)
T PRK10642 327 FVLAIPAFILIN-----------------SNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI------RYSALAAA 383 (490)
T ss_pred HHHHHHHHHHHh-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc------chHHHHHH
Confidence 54433322 221 1245667788888888777777777888889999888 89999986
Q ss_pred HHHHHHHHHHHHHHHhhhcccc-cchHHHHHHHHHHHHHHHHHHh
Q 044175 172 LLTTTLAAVIGVTAIVYVSTEK-AWWGGFLISSIVTFIGFIALVI 215 (537)
Q Consensus 172 ~~~~~~g~~i~~~~~~~l~~~~-g~~~~f~i~~~~~~~~~~~~~~ 215 (537)
+....+++.++|.+.+++.+.. +|+.++++..+..++.++..++
T Consensus 384 ~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~ 428 (490)
T PRK10642 384 FNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVT 428 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence 6556677788999999887654 4666655544444444444433
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.2e-12 Score=131.68 Aligned_cols=176 Identities=15% Similarity=0.100 Sum_probs=132.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHH
Q 044175 13 GFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLE 92 (537)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~ 92 (537)
+++..+..+.........++....+.+.|+++++|+++.+.+.+.+...+...++.+++|+++||+ |||+.+..+....
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~ 292 (393)
T PRK15011 214 NRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAG 292 (393)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHH
Confidence 444444444444444455555667888999999999999999988887788888999999999995 9999888776655
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHH
Q 044175 93 VLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFL 172 (537)
Q Consensus 93 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 172 (537)
.+....+... ++...+++.+++.+++.|...+..+.+..|.+|+ + ++++.+.+.
T Consensus 293 ~~~~~~~~~~-------------------~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~------~g~~~~~~~ 346 (393)
T PRK15011 293 VCFYAGMLMA-------------------HSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-Q------AGSATTLYT 346 (393)
T ss_pred HHHHHHHHHH-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C------cchHHHHHH
Confidence 5544333333 2455666778877777777666677778888874 4 678888887
Q ss_pred HHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHh
Q 044175 173 LTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVI 215 (537)
Q Consensus 173 ~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~ 215 (537)
...++|..++|.++|++.+..||+..|.+..+..+++++..+.
T Consensus 347 ~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 347 NTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR 389 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 7889999999999999999889999998877766666655544
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.6e-12 Score=134.42 Aligned_cols=175 Identities=14% Similarity=0.075 Sum_probs=131.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHH
Q 044175 16 ACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLA 95 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~ 95 (537)
.+|.+.+..++....+++...+++.|+++++|++..++++......++..++.+++|+++||+ |||+.+.....+..++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~~ 337 (467)
T PRK09556 259 VIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALII 337 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHHH
Confidence 567777888888888888889999999999999999999999999999999999999999995 9998877665444443
Q ss_pred HHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHH
Q 044175 96 LVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTT 175 (537)
Q Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 175 (537)
..+..... ..+.....+.+++.|+..............|.+|++. ++++.+......
T Consensus 338 ~~~~~~~~-----------------~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~------~g~a~gi~~~~g 394 (467)
T PRK09556 338 FTLGVYQH-----------------ATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA------IGVANGIKGTFA 394 (467)
T ss_pred HHHHHHHh-----------------cCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh------HHHHHHHHHHHH
Confidence 32222221 1234455566777775443333333356679999877 899999998888
Q ss_pred HH-HHHHHHHHHhhhcc------------cccchHHHHHHHHHHHHHHHHHH
Q 044175 176 TL-AAVIGVTAIVYVST------------EKAWWGGFLISSIVTFIGFIALV 214 (537)
Q Consensus 176 ~~-g~~i~~~~~~~l~~------------~~g~~~~f~i~~~~~~~~~~~~~ 214 (537)
++ |+.++|.+.|++.+ ..+|+..|.+..+..+++.+..+
T Consensus 395 ~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 395 YLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred HHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 86 77999999999988 56899999877666555544433
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.9e-12 Score=126.31 Aligned_cols=177 Identities=16% Similarity=0.171 Sum_probs=142.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhcc-chhHHHHHH-HHHH
Q 044175 15 RACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFL-SRFATCLIF-GTLE 92 (537)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~-Gr~~~~~~~-~~~~ 92 (537)
|.+|.+.+..++-....|++..+.|.|+.+..|++..++++..+.|..+...+++++||+|||.+ |||...-+. +++.
T Consensus 252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i 331 (448)
T COG2271 252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLI 331 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999987 777655444 3344
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHH
Q 044175 93 VLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFL 172 (537)
Q Consensus 93 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 172 (537)
.++.+....++ .++..+..+..+.+|+-..+..-.+.....|..|++- .+++.++..
T Consensus 332 ~~~~~~~w~~~-----------------~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A------aGtA~Gf~G 388 (448)
T COG2271 332 TASLVLYWLAP-----------------NGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA------AGTATGFVG 388 (448)
T ss_pred HHHHHHHHcCC-----------------CccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh------ccchhchhh
Confidence 44444555543 2356777777788888877777777777889888776 788888887
Q ss_pred HHHHH-HHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHH
Q 044175 173 LTTTL-AAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALV 214 (537)
Q Consensus 173 ~~~~~-g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~ 214 (537)
.+..+ |++.+....+++.+.+||...|.+-.+..+++.+++.
T Consensus 389 lf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~ 431 (448)
T COG2271 389 LFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLL 431 (448)
T ss_pred hHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHH
Confidence 77777 8888888889998989999999876666555555443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.7e-10 Score=110.72 Aligned_cols=380 Identities=14% Similarity=0.057 Sum_probs=213.4
Q ss_pred hhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccc-----hhHHHHH-HHHHHHHHHHHHHHHhhccccCCCCCCCC
Q 044175 43 KNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLS-----RFATCLI-FGTLEVLALVMITVQAYSEKLHPPDCGKS 116 (537)
Q Consensus 43 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G-----r~~~~~~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 116 (537)
..|++++..-.+.++....+... ..+..|+.||+. + ||.-+++ |.+++..+..++..+... +.+. ..++
T Consensus 7 IvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~--l~~~-~~~~ 81 (403)
T PF03209_consen 7 IVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLL--LAES-GQQS 81 (403)
T ss_pred HHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHH--Hccc-cccc
Confidence 45788888888888877666654 699999999996 7 5555554 566667766666654311 1110 0000
Q ss_pred CccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcccccc-
Q 044175 117 SCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVSTEKAW- 195 (537)
Q Consensus 117 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~- 195 (537)
+-+.........++..+.|+|.+.......++.+|..|+++ |++..++.|.+.-+|.+++..+.+.+.+.++.
T Consensus 82 ~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~ 155 (403)
T PF03209_consen 82 SGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPE 155 (403)
T ss_pred ccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHHHHHccccCHH
Confidence 00001122344455677899999999999999999999888 99999999999999999999999988777653
Q ss_pred hHHHHH---HHHHHHHHHHHHHhccccccccCCCCCchhhHHHHHHHHHHhccCCCCCChhhhhhhhhhhccCCccccCC
Q 044175 196 WGGFLI---SSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQVVVVAIKNRKLSLPENPEELYEINEKERVGTEERIPH 272 (537)
Q Consensus 196 ~~~f~i---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (537)
|..=.+ +.+...+.++..+-.+++.++..+.++
T Consensus 156 rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~-------------------------------------------- 191 (403)
T PF03209_consen 156 RLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAAE-------------------------------------------- 191 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCCC--------------------------------------------
Confidence 222122 222223333333322222111110000
Q ss_pred CCchhHhhhhccCCCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHhhhhcchhh-heeccccCCCCCccccCC
Q 044175 273 TNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVKILTRMMPILASTILMNTCLAQLQTFS-VTQGAYMDPQLGSIKVPT 351 (537)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 351 (537)
.++.++.+ .|+....+ .+.++++..+ ++....+.. | ...+ ++-..-.+.+.+ .+
T Consensus 192 ~~~~~f~~-------------a~~~~~~~--~~a~~f~~fl--~l~t~a~~~---Q-D~iLEPygg~Vfgmsv~----eT 246 (403)
T PF03209_consen 192 RPRPPFRE-------------AWRQVWAS--PQARRFFVFL--FLGTLAFFM---Q-DVILEPYGGEVFGMSVG----ET 246 (403)
T ss_pred CCCccHHH-------------HHHHHHhC--CChhHHHHHH--HHHHHHHHh---h-HHHcCCchhHHcCCCHH----HH
Confidence 00000111 01100000 0112222111 222221111 1 1100 011111111100 11
Q ss_pred CcccccchHhHHHHhhhhcchhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCccchHHHH
Q 044175 352 PSIPVIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVEVQRRNAFNQMPPKQISLFWL 431 (537)
Q Consensus 352 ~~~~~~~~~~~ii~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l 431 (537)
..++.....+.++...+..+... +|. ++.+....|....++++........ ..+.+.+
T Consensus 247 T~Lta~~~~G~L~G~~~~g~~l~---~~~-------~~~~~a~~G~~~~~~~f~lii~a~~------------~~~~~~~ 304 (403)
T PF03209_consen 247 TRLTAFWGGGTLLGMLLAGFLLS---RRL-------GKKRTAALGCLLGALAFALIILAGP------------LGSPWLF 304 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc---CCC-------CchHHHHHHHHHHHHHHHHHHHHHh------------cccchHH
Confidence 12333344555555555554332 221 2334445666666666655444211 1235667
Q ss_pred HHHHHHHHHHHHHHhhhhHHHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCccCCCCCCch
Q 044175 432 SFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLSFGNFLSSVFVDIINAVTKRITPSKQGWLHGTDINKNN 511 (537)
Q Consensus 432 ~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~ 511 (537)
.+..+++|++.++......+...+..+++..|+.+|.|...+.++..++..+.+.+.|.... +..+ -...+
T Consensus 305 ~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~-------~~~~--~~~~a 375 (403)
T PF03209_consen 305 RPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRA-------LFGN--SPALA 375 (403)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hccC--CcchH
Confidence 77889999999999999999999999999999999999999999999999988888876543 2221 12245
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh
Q 044175 512 ANLFYWFLAILSVLNFVLYLYA 533 (537)
Q Consensus 512 ~~~~f~~~~~l~~~~~v~~~~~ 533 (537)
|...|.+=+.+.++++++...+
T Consensus 376 Y~~VF~lEa~ll~~a~~ll~~l 397 (403)
T PF03209_consen 376 YGVVFALEAVLLLAALVLLGRL 397 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 6667766666666665554433
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.1e-12 Score=128.95 Aligned_cols=167 Identities=16% Similarity=0.127 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHh
Q 044175 24 SSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQA 103 (537)
Q Consensus 24 ~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~ 103 (537)
..+..+++.....+++.|+.+ .|+ .+.+.....+.++..++.++.|+++||+ ||||.+..+..+..++.+++....
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~ 300 (399)
T PRK05122 225 LALASIGFGTIATFITLYYAA-RGW--DGAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWLAP 300 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-ccc--ccchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhc
Confidence 344456666677788888764 465 3445666778888889999999999995 999999998888888777666542
Q ss_pred hccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHH
Q 044175 104 YSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGV 183 (537)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~ 183 (537)
+...+++.+++.|++.+...+.......|..|+++ |++..+.++...++|..+++
T Consensus 301 -------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~~~ 355 (399)
T PRK05122 301 -------------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYSVFLDLSLGITG 355 (399)
T ss_pred -------------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 45566778889999999888888888888888666 89999999989999999999
Q ss_pred HHHhhhcccccchHHHHHHHHHHHHHHHHHHhcccc
Q 044175 184 TAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPF 219 (537)
Q Consensus 184 ~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~ 219 (537)
.+.|++.+..||+..|.+.+...+++++..+..+++
T Consensus 356 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 356 PLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRR 391 (399)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999988899999988777766666555554443
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-09 Score=110.92 Aligned_cols=361 Identities=14% Similarity=0.097 Sum_probs=209.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhc---cchhHH-HHHHHHHHHHH
Q 044175 20 IFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTF---LSRFAT-CLIFGTLEVLA 95 (537)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~Gr~~~-~~~~~~~~~i~ 95 (537)
-....+..++.+-.+..++..|+++.+|+++..+|.+..+.-+.-++.-|+.|.+.||. +||+|- ++++.+..++.
T Consensus 17 Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~ 96 (467)
T COG2211 17 YGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIV 96 (467)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHH
Confidence 34445566666677788899999999999999999999999999999999999999983 587665 45556778888
Q ss_pred HHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHH
Q 044175 96 LVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTT 175 (537)
Q Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 175 (537)
.+++..++. ... .......++...+.+++...+.....++.+|+.++.+ +|.+..++.....
T Consensus 97 ~~l~F~~p~---~~~----------~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~-----ER~~l~s~R~~~~ 158 (467)
T COG2211 97 AVLLFITPD---FSM----------TGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQ-----ERASLTSWRMVFA 158 (467)
T ss_pred HHHHHcCCC---ccc----------CcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHH-----HHHHHHHHHHHHH
Confidence 888877641 110 2345666677788999999988888999999876432 2888888888888
Q ss_pred HHHHHHHHHHHhhhc----c---cccchHHHHHHHHHHHHHHHHHHhc-cccccccCCCCCchhhHHHHHHHHHHhccCC
Q 044175 176 TLAAVIGVTAIVYVS----T---EKAWWGGFLISSIVTFIGFIALVIG-KPFYRNQQPGESPLVRVSQVVVVAIKNRKLS 247 (537)
Q Consensus 176 ~~g~~i~~~~~~~l~----~---~~g~~~~f~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 247 (537)
++|..+...+.+.+. + ..||+..-.+..++..+..+..++. +|+..+..+.++.
T Consensus 159 ~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~------------------ 220 (467)
T COG2211 159 SLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTG------------------ 220 (467)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCccc------------------
Confidence 888665554443332 2 2355554444333333333222222 2221111111000
Q ss_pred CCCChhhhhhhhhhhccCCccccCCCCchhHhhhhccCCCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHhhh
Q 044175 248 LPENPEELYEINEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVKILTRMMPILASTILMNTCLA 327 (537)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 327 (537)
...++.|.-.. .-..|.+. .+....++.+...+
T Consensus 221 --------------------------~~~~~~~~~~~------------------~~~Nrp~~---~~l~~~l~~~~~~~ 253 (467)
T COG2211 221 --------------------------VKLKLKDSFLL------------------IFKNRPLL---LLLLMNLLLFIAFN 253 (467)
T ss_pred --------------------------ccccHHHHHHH------------------HHccchHH---HHHHHHHHHHHHHH
Confidence 00000000000 00011111 11112222233333
Q ss_pred hcchhhheecc-ccCCCCCccccCCCcccccchHhHHHHhhhhcchhccccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 044175 328 QLQTFSVTQGA-YMDPQLGSIKVPTPSIPVIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTI 406 (537)
Q Consensus 328 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~ 406 (537)
...+...++.. .++.. ...+...........++..++..++. +|+ ++.+....+.++.+++...
T Consensus 254 i~~s~~~yy~~y~lg~~----~l~~~~~~~~~~~~~l~~~~~~p~L~----~~~-------gkk~~~~~~~~~~~i~~~~ 318 (467)
T COG2211 254 IRGSIMVYYVTYVLGDP----ELFAYLLLLASGAGLLIGLILWPRLV----KKF-------GKKKLFLIGLLLLAVGYLL 318 (467)
T ss_pred HHhhhhheeEEEEcCCh----HHHHHHHHHHHHHHHHHHHHhHHHHH----HHh-------chHHHHHHHHHHHHHHHHH
Confidence 23332222221 11111 11111111112222222233333332 332 3345566677777777665
Q ss_pred HHHHHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhcc-------CcchhHHHHHHHHHHHHHHHHH
Q 044175 407 AGFVEVQRRNAFNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEA-------PAGMRTLSTSFTFLSLSFGNFL 479 (537)
Q Consensus 407 ~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~-------P~~~rg~~~g~~~~~~~~g~~~ 479 (537)
.-+.. +.+...++...++.++|.+...+..|+++.|.. -++..|...|...+..=+|..+
T Consensus 319 ~~f~~-------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~al 385 (467)
T COG2211 319 LYFTP-------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLAL 385 (467)
T ss_pred HHhhc-------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHH
Confidence 55531 124455556668888899999999998888754 4566788899999999999999
Q ss_pred HHHHHHHhhhhh
Q 044175 480 SSVFVDIINAVT 491 (537)
Q Consensus 480 ~~~l~~~i~~~~ 491 (537)
+..+.+.+....
T Consensus 386 a~~~~g~~L~~~ 397 (467)
T COG2211 386 AGFIPGWILGAI 397 (467)
T ss_pred HHHHHHHHHHHc
Confidence 998888776443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.9e-11 Score=123.01 Aligned_cols=173 Identities=21% Similarity=0.226 Sum_probs=151.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhH-HHHHHHHHHH
Q 044175 15 RACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFA-TCLIFGTLEV 93 (537)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~-~~~~~~~~~~ 93 (537)
|.++...+..++....+.....+.+.++++.+|.+..+.+.+.....++..++.++.|+++||+ |||+ .+..+..+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 253 (352)
T cd06174 175 RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAA 253 (352)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHH
Confidence 4556666777778888888888899999888899999999999999999999999999999995 9999 9999999999
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHH
Q 044175 94 LALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLL 173 (537)
Q Consensus 94 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 173 (537)
++.+...... +.....+..++.|++.+...+....++.|..|+++ |++.++....
T Consensus 254 i~~~~~~~~~-------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 308 (352)
T cd06174 254 LGLLLLALAP-------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEA------RGTASGLFNT 308 (352)
T ss_pred HHHHHHHHhc-------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH------HHHHHHHHHH
Confidence 8888777653 46677888999999999999999999999999766 8999999999
Q ss_pred HHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHH
Q 044175 174 TTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIAL 213 (537)
Q Consensus 174 ~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~ 213 (537)
..++|..++|.+.+++.+..+|+..|.+..+..++..+..
T Consensus 309 ~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 309 FGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred HHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence 9999999999999999988899999988887766665544
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-11 Score=124.89 Aligned_cols=169 Identities=13% Similarity=0.069 Sum_probs=134.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHH
Q 044175 16 ACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLA 95 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~ 95 (537)
..+.+....++..+.........+.|. +++|.++.+.+.+.+.+.+...++.++.|+++||+ |||+.+.++.++..++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~ 283 (377)
T TIGR00890 206 QFWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAVG 283 (377)
T ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHH
Confidence 344455555555555555556666675 56899998999999999999999999999999995 9999999998888888
Q ss_pred HHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHH
Q 044175 96 LVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTT 175 (537)
Q Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 175 (537)
.+++..... .....+++..++.+++.|...+..+.+..|.+|+++ |++.+++.+...
T Consensus 284 ~~~~~~~~~-----------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~ 340 (377)
T TIGR00890 284 MAAMLFIPM-----------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAANYGFLYTAK 340 (377)
T ss_pred HHHHHHccc-----------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhHhHHHHHHH
Confidence 777665431 122334456677888888888888899999999877 899999999999
Q ss_pred HHHHHHHHHHHhhhcccccchHHHHHHHHHHHHH
Q 044175 176 TLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIG 209 (537)
Q Consensus 176 ~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~ 209 (537)
++|..++|.+.+++.+..||+..|.+.+++.+++
T Consensus 341 ~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 341 AVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 9999999999999999899999998877655443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.6e-11 Score=126.73 Aligned_cols=181 Identities=12% Similarity=-0.020 Sum_probs=129.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHH
Q 044175 13 GFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLE 92 (537)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~ 92 (537)
+++.........++..+++|...++.+.|+++.+|++......+.........++.++.|+++||+ ||||++..+.++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~~~ 326 (438)
T PRK09952 248 HPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGALIG 326 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHH
Confidence 344444445567777888999999999999999999887766666666777788899999999995 9999999887765
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHH
Q 044175 93 VLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFL 172 (537)
Q Consensus 93 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 172 (537)
.++.+.+...... .+....+++..++.+++.+...+...++.+|.+|.+. |+++.++.+
T Consensus 327 ~~~~~~~~~~~~~---------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~------r~tg~g~~~ 385 (438)
T PRK09952 327 TLSAFPFFMALEA---------------QSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY------RYSGAGVGY 385 (438)
T ss_pred HHHHHHHHHHHHc---------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch------hHHHHhHHH
Confidence 5554433322100 1123344455566778888888888999999999877 888888865
Q ss_pred HH-HHHHHHHHHHHHhhhcccc--cchHHHHHHHHHHHHHHHHHHh
Q 044175 173 LT-TTLAAVIGVTAIVYVSTEK--AWWGGFLISSIVTFIGFIALVI 215 (537)
Q Consensus 173 ~~-~~~g~~i~~~~~~~l~~~~--g~~~~f~i~~~~~~~~~~~~~~ 215 (537)
.. ..+|+.++|.+.+++.+.. +|...+.+.++..+++.+..+.
T Consensus 386 ~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~ 431 (438)
T PRK09952 386 QVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALL 431 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 44 4589999999999987643 4777777666655555554443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.5e-11 Score=126.78 Aligned_cols=170 Identities=12% Similarity=0.127 Sum_probs=133.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHH
Q 044175 15 RACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVL 94 (537)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i 94 (537)
+.++.+.+..++...+++++..+++.|+++++|++..+.+.+.+.+.++..++.+++|+++||+ |||+.+..+..+..+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~ 283 (394)
T PRK03699 205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALV 283 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHH
Confidence 3556666667777778888899999999999999999999999999999999999999999995 999998887776666
Q ss_pred HHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHH
Q 044175 95 ALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLT 174 (537)
Q Consensus 95 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 174 (537)
+..+..... +.....+..++.|++.+...+...+...|..+++. ++..++...+
T Consensus 284 ~~~~~~~~~-------------------~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~~~ 337 (394)
T PRK03699 284 LMYLFVNTD-------------------DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVAS-------PKLVNFILTC 337 (394)
T ss_pred HHHHHHHcC-------------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-------HHHHHHHHHh
Confidence 554444331 34445556677888888788888877888766433 4456677777
Q ss_pred HHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHH
Q 044175 175 TTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFI 211 (537)
Q Consensus 175 ~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~ 211 (537)
.++|..++|.+.|++.+..|++..|++..++..++.+
T Consensus 338 ~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~ 374 (394)
T PRK03699 338 GTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFV 374 (394)
T ss_pred hhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHH
Confidence 8899999999999999988999988876665554433
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.7e-12 Score=119.02 Aligned_cols=374 Identities=12% Similarity=0.122 Sum_probs=212.7
Q ss_pred HHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCC
Q 044175 36 ISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGK 115 (537)
Q Consensus 36 ~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 115 (537)
.-+..+.+.+.+++.++..++.+.|...+.+.+.++|++.||.+|-|..-++-+....+|-+..+....
T Consensus 64 ~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi----------- 132 (459)
T KOG4686|consen 64 GALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGI----------- 132 (459)
T ss_pred hhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchH-----------
Confidence 446677888888888899999999999999999999999999889776666666666677766554321
Q ss_pred CCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 044175 116 SSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVSTEKAW 195 (537)
Q Consensus 116 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~ 195 (537)
.+.++....+|++.|+|.-......+.+...+|..++ ..-.+++.....-+|...-..+.+++.+..+-
T Consensus 133 -----~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~vfGlqlSvAR~GstvNf~lm~~ly~~~~~ 201 (459)
T KOG4686|consen 133 -----SHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNFVFGLQLSVARLGSTVNFLLMPFLYDTMGR 201 (459)
T ss_pred -----HHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccchhhHHHHHHHhhceeeeeecHHHHHHHHH
Confidence 1478999999999999988888888999999999888 88899998877778877666666666554331
Q ss_pred hHHHHHHHHHHHHHHHHHHhccccccccCCCCCchhhHHHHHHHHHHhccCCCCCChhhhhhhhhhhccCCccccCCCCc
Q 044175 196 WGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQVVVVAIKNRKLSLPENPEELYEINEKERVGTEERIPHTNQ 275 (537)
Q Consensus 196 ~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (537)
-.+ ...-..+++.+.+-.+. . ..+..-.+...+..++. .+.+..++ -...|+
T Consensus 202 ~~~---~~ghT~LG~~l~~~~~t---c-------~~slical~lg~~D~rA-----erilh~e~----------g~~Ge~ 253 (459)
T KOG4686|consen 202 MFP---GVGHTLLGLWLCFEVKT---C-------KQSLICALSLGLSDDRA-----ERILHLEE----------GFLGEE 253 (459)
T ss_pred hcc---cchHHHHHHHHHHHHHH---H-------HHHHHHHHHhhhhhhHH-----HHHHhhhc----------CcccCC
Confidence 100 00001111111000000 0 00000000000000000 00000000 000011
Q ss_pred hhHhhhhccCCCCCCCCCCcccccchhHHHHHHHHh-HHHHHHHHHHHHHhhhhcc---hhhheeccccCCCCCccccCC
Q 044175 276 FRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVKILTR-MMPILASTILMNTCLAQLQ---TFSVTQGAYMDPQLGSIKVPT 351 (537)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 351 (537)
.+. ++++.... ...+....+++++....+. ..+..... +.++
T Consensus 254 pkL-------------------------tdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rf---------GlS~ 299 (459)
T KOG4686|consen 254 PKL-------------------------TDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRF---------GLSA 299 (459)
T ss_pred ccc-------------------------ccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhh---------CCCh
Confidence 111 11111100 1111122333333322222 22221111 2222
Q ss_pred Ccccccch---HhHHHHhhhhcchhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCccchH
Q 044175 352 PSIPVIPL---LFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVEVQRRNAFNQMPPKQISL 428 (537)
Q Consensus 352 ~~~~~~~~---~~~ii~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 428 (537)
..-+++++ .......|+...++|+.+++. +.+..+.+....+.....+.. .+.
T Consensus 300 ~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~----------~wv~~a~~~tl~~H~~l~Ft~--------------lsP 355 (459)
T KOG4686|consen 300 VSAGNILSTVYGISAVLSPVFGAISDKYGFNL----------WWVASACILTLLGHSGLFFTF--------------LSP 355 (459)
T ss_pred hhccchhhhhhhhhhhhhhhHHHhHhhhccee----------hhHHHHHHHHHHHhhhHHhhh--------------ccH
Confidence 22223333 333445577777666655542 334444444444444443321 122
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCccCCCCC
Q 044175 429 FWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLSFGNFLSSVFVDIINAVTKRITPSKQGWLHGTDIN 508 (537)
Q Consensus 429 ~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~~~~w~~~~~l~ 508 (537)
...+.++|++.-+.....|..+....|++.-|++.|..+..+++|-.+.+.+.+.+.+-. +++
T Consensus 356 ---y~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~-------g~y------- 418 (459)
T KOG4686|consen 356 ---YTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGD-------GSY------- 418 (459)
T ss_pred ---HHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCC-------Cch-------
Confidence 235677788877777788999999999999999999999999999999999988776322 111
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhcc
Q 044175 509 KNNANLFYWFLAILSVLNFVLYLYAAA 535 (537)
Q Consensus 509 ~~~~~~~f~~~~~l~~~~~v~~~~~~~ 535 (537)
.+.+.+|...+.+++.+..+.+.+-|
T Consensus 419 -~~le~ffl~~~~~aL~svgil~~~N~ 444 (459)
T KOG4686|consen 419 -DNLEAFFLIIGLMALTSVGILFYLNK 444 (459)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHhheec
Confidence 23456777777777777666655544
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-11 Score=134.57 Aligned_cols=134 Identities=16% Similarity=0.082 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHH
Q 044175 55 NTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLY 134 (537)
Q Consensus 55 ~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 134 (537)
....+..++..++.+++|+++||+ |||+++.++.++.+++.+++++.. +...+++.+++.
T Consensus 599 ~~~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~~-------------------s~~~ll~~~~l~ 658 (742)
T TIGR01299 599 FVNFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFGN-------------------SESAMIALLCLF 658 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHc-------------------cHHHHHHHHHHH
Confidence 334456688899999999999995 999999999999999888877763 344566677788
Q ss_pred HHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHH
Q 044175 135 ALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALV 214 (537)
Q Consensus 135 g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~ 214 (537)
++..++..+...++++|++|++. |++++++.+....+|++++|++++.+... +...+|++.+++.+++.++.+
T Consensus 659 g~~~~~~~~~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~ 731 (742)
T TIGR01299 659 GGLSIAAWNALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLAL 731 (742)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHH
Confidence 88878888889999999999877 99999999999999999999999887654 456677776666555555444
Q ss_pred h
Q 044175 215 I 215 (537)
Q Consensus 215 ~ 215 (537)
+
T Consensus 732 ~ 732 (742)
T TIGR01299 732 K 732 (742)
T ss_pred h
Confidence 3
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.7e-11 Score=123.67 Aligned_cols=171 Identities=13% Similarity=0.085 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHH
Q 044175 17 CGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLAL 96 (537)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~ 96 (537)
.+.+....++....+......++.|+++++|.++.+.+.+.........++.+++|+++||+ |||+++.++.+...+..
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~ 279 (375)
T TIGR00899 201 TRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFY 279 (375)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHH
Confidence 33333444444444455556778899889999999999888887777888899999999995 99999988876655554
Q ss_pred HHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHH
Q 044175 97 VMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTT 176 (537)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 176 (537)
....... +.+.+.+.+++.|++.|...+....+..|..|+ + ++++++..+...+
T Consensus 280 ~~~~~~~-------------------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~ 333 (375)
T TIGR00899 280 TGLAADN-------------------SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-R------AGAATTLYTNTGR 333 (375)
T ss_pred HHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-h------hhHHHHHHHHHHH
Confidence 4444332 455666778888888888888888888888764 3 4588888888889
Q ss_pred HHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHH
Q 044175 177 LAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALV 214 (537)
Q Consensus 177 ~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~ 214 (537)
+|..++|.++|++.+..||+..|++.++..+++.+...
T Consensus 334 ~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 334 VGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLL 371 (375)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence 99999999999998888999999887777666655543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-11 Score=126.75 Aligned_cols=168 Identities=14% Similarity=0.100 Sum_probs=131.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHH
Q 044175 13 GFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLE 92 (537)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~ 92 (537)
+++.++......++....++....+++.|+++++|.+..+.+.+.....+...++.+++|+++||+ |||+.+..+..+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~ 295 (394)
T TIGR00883 217 HRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVLA 295 (394)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHH
Confidence 334567777778888888888889999999889999999999999999999999999999999995 9999888665554
Q ss_pred HHHH-HHH-HHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHH
Q 044175 93 VLAL-VMI-TVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNY 170 (537)
Q Consensus 93 ~i~~-~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 170 (537)
.+.. .+. .... ..+...+.+..++.+++.+...+...+++.|.+|+++ |+++++.
T Consensus 296 ~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~ 352 (394)
T TIGR00883 296 ALLAVPLLMALLD-----------------SGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV------RYTGASL 352 (394)
T ss_pred HHHHHHHHHHHhc-----------------CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc------eeeEeee
Confidence 4433 222 2221 1244556667788888888888999999999999877 7787777
Q ss_pred HH-HHHHHHHHHHHHHHhhhccccc-chHHHHHHHH
Q 044175 171 FL-LTTTLAAVIGVTAIVYVSTEKA-WWGGFLISSI 204 (537)
Q Consensus 171 ~~-~~~~~g~~i~~~~~~~l~~~~g-~~~~f~i~~~ 204 (537)
.+ ....+|..++|.++|++.++.| |+..++....
T Consensus 353 ~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~ 388 (394)
T TIGR00883 353 AYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAA 388 (394)
T ss_pred hhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHH
Confidence 44 4556888899999999988887 7776655443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.1e-11 Score=126.50 Aligned_cols=177 Identities=14% Similarity=0.017 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc--------hhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHH
Q 044175 18 GFIFVLSSLENMGFIANAISMVLYFKNEMHFN--------LAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFG 89 (537)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~--------~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~ 89 (537)
+.+++..++..........+.+.|+++ .|.+ ..+.+...+...+...++.++.|+++||+ |||+++.++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~~ 288 (418)
T TIGR00889 211 AIFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLSL 288 (418)
T ss_pred eeHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHH
Confidence 345555555555555555777778754 4544 35668888999999999999999999995 9999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHH
Q 044175 90 TLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFN 169 (537)
Q Consensus 90 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 169 (537)
++..++..++..... + ..+...+++.+++.|++.+...+....+++|.+|+++ |++.++
T Consensus 289 ~~~~v~~~l~~~~~~--~-------------~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~------~g~~~g 347 (418)
T TIGR00889 289 VAWALRFGFFAYGDP--E-------------YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI------RASAQG 347 (418)
T ss_pred HHHHHHHHHHHHcCc--c-------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHH
Confidence 988888766665320 0 0124566778899999999888998999999999777 899999
Q ss_pred HHH-HHHHHHHHHHHHHHhhhccc------ccchHHHHHHHHHHHHHHHHHHhcc
Q 044175 170 YFL-LTTTLAAVIGVTAIVYVSTE------KAWWGGFLISSIVTFIGFIALVIGK 217 (537)
Q Consensus 170 ~~~-~~~~~g~~i~~~~~~~l~~~------~g~~~~f~i~~~~~~~~~~~~~~~~ 217 (537)
+.+ ....+|..++|.++|++.+. +||+..|.+.+++.+++.++.++..
T Consensus 348 ~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~ 402 (418)
T TIGR00889 348 LFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFF 402 (418)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 987 56789999999999998876 4699999887766655555544443
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=6e-11 Score=122.24 Aligned_cols=174 Identities=9% Similarity=-0.044 Sum_probs=134.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHH
Q 044175 15 RACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVL 94 (537)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i 94 (537)
+..+.+.+...+..++++++..+.+.|+.+ .|.+..+++...+.+.++..++.++.|+++||+ |||+.+..+..+..+
T Consensus 205 ~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~ 282 (393)
T PRK09705 205 PRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLV 282 (393)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHH
Confidence 345666666677788888999999999975 799999999999999999999999999999995 999999998877777
Q ss_pred HHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCC-CChhhhhhhhhHHHHHHH
Q 044175 95 ALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDE-KDPKGAKALASYFNYFLL 173 (537)
Q Consensus 95 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~ 173 (537)
+...+...+ .+.... ..++.|++.+...|.......|.+++ ++ +++.++..+.
T Consensus 283 ~~~~~~~~~------------------~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~ 336 (393)
T PRK09705 283 GFCGFIWLP------------------LQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAI------AGKLVAFMQG 336 (393)
T ss_pred HHHHHHHcc------------------chHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHH------HHHHHHHHHH
Confidence 766554332 111222 22456788888888777777777753 33 7889999998
Q ss_pred HHHHHHHHHHHHHhhhccccc-chHHHHHHHHHHHHHHHHHHhc
Q 044175 174 TTTLAAVIGVTAIVYVSTEKA-WWGGFLISSIVTFIGFIALVIG 216 (537)
Q Consensus 174 ~~~~g~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~~~ 216 (537)
..+++..++|.+.|++.+..| |...|.+.+..+++..+.....
T Consensus 337 ~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (393)
T PRK09705 337 IGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRF 380 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999998876 7888887776665555444443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.9e-11 Score=125.69 Aligned_cols=149 Identities=16% Similarity=0.171 Sum_probs=114.9
Q ss_pred HHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 044175 33 ANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPD 112 (537)
Q Consensus 33 ~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 112 (537)
....+++.|+++++|++..+.+.+.+...++..++.+++|+++||+ |||+++..+..+..++.++.....
T Consensus 293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~--------- 362 (496)
T PRK03893 293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAIG--------- 362 (496)
T ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhcc---------
Confidence 4567889999889999999999999999999999999999999995 999999888766665554433321
Q ss_pred CCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 044175 113 CGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVSTE 192 (537)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~ 192 (537)
..+.....+..++.+.......+..++++.|.+|+++ |++.+++.+...++|..++|.++|++.+.
T Consensus 363 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~lgp~l~g~l~~~ 428 (496)
T PRK03893 363 --------GANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVGALGGALAPILGALIAQR 428 (496)
T ss_pred --------ccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhhhHHHHHHHHHHHHHhcc
Confidence 1233333344444433333445677788899998777 89999999988899999999999999999
Q ss_pred ccchHHHHHHHHH
Q 044175 193 KAWWGGFLISSIV 205 (537)
Q Consensus 193 ~g~~~~f~i~~~~ 205 (537)
.||+..+...+..
T Consensus 429 ~g~~~~~~~~~~~ 441 (496)
T PRK03893 429 LDLGTALASLSFS 441 (496)
T ss_pred CChHHHHHHHHHH
Confidence 9998877554433
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.31 E-value=9e-09 Score=107.65 Aligned_cols=85 Identities=13% Similarity=0.206 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCccCCCCCCc
Q 044175 431 LSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLSFGNFLSSVFVDIINAVTKRITPSKQGWLHGTDINKN 510 (537)
Q Consensus 431 l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~ 510 (537)
..+.-++.|+..+...+..-++..+..|++..+...|++.+......++||.+.+.+.+.+++
T Consensus 383 f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~----------------- 445 (477)
T PF11700_consen 383 FWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGS----------------- 445 (477)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----------------
Confidence 333456788888899999999999999999999999999999999999999999999876643
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhh
Q 044175 511 NANLFYWFLAILSVLNFVLYLYA 533 (537)
Q Consensus 511 ~~~~~f~~~~~l~~~~~v~~~~~ 533 (537)
..+-++...++.++++++...+
T Consensus 446 -~r~g~~~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 446 -QRYGFLFLLVLFLIGLILLFFV 467 (477)
T ss_pred -chhHHHHHHHHHHHHHHHHhhc
Confidence 1223555556666666555433
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.7e-12 Score=107.72 Aligned_cols=132 Identities=17% Similarity=0.214 Sum_probs=111.4
Q ss_pred HHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHh
Q 044175 58 TNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALG 137 (537)
Q Consensus 58 ~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g 137 (537)
+.+.++..++.++.|+++||+ |||+.+..+..+..++.+++.... +...+.+.+++.|++
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~g~~ 64 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALSS-------------------NITVLIIARFLQGFG 64 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHhc-------------------cHHHHHHHHHHHHHH
Confidence 345677888999999999995 999999999988888887776652 567788889999999
Q ss_pred cccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHh
Q 044175 138 SGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVI 215 (537)
Q Consensus 138 ~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~ 215 (537)
.+...+...+++.|.+|+++ |++..+..+...++|..++|.+.+++.+..+|+..|.+......+..+..+.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (141)
T TIGR00880 65 AAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAF 136 (141)
T ss_pred HHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999877 8999999999999999999999999988889999888776665555444433
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-10 Score=119.13 Aligned_cols=174 Identities=8% Similarity=-0.046 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHH
Q 044175 17 CGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLAL 96 (537)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~ 96 (537)
++......++....+++...+++.|+.++.|.+..+.+.+.+...++..++.++.|+++||+ |||+. ..+..+..++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~-~~~~~~~~~~~ 284 (390)
T PRK03545 207 LVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFL-LIAIALLLVCL 284 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHH-HHHHHHHHHHH
Confidence 34444555566666677777888898888999999999999999999999999999999995 98764 44444444444
Q ss_pred HHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHH
Q 044175 97 VMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTT 176 (537)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 176 (537)
.+..... .+...+++..++.|++.+...+...+.+.|..| ++ |+++++......+
T Consensus 285 ~~l~~~~------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~ 339 (390)
T PRK03545 285 LLLLPAA------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DA------TDVAMALFSGIFN 339 (390)
T ss_pred HHHHHHh------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-Cc------HHHHHHHHHHHHH
Confidence 3332221 245666777788888888777777777777765 34 6788888888889
Q ss_pred HHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHhcc
Q 044175 177 LAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGK 217 (537)
Q Consensus 177 ~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~ 217 (537)
+|..+||.++|++.+++|++..|.+.+.+.+++++......
T Consensus 340 ~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 340 IGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999988877777666655443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.9e-11 Score=121.82 Aligned_cols=168 Identities=13% Similarity=0.028 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCchh---hHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHH
Q 044175 22 VLSSLENMGFIANAISMVLYFKNEMHFNLA---GASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVM 98 (537)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l 98 (537)
...++.......+.+.++.|+.+..+-... ..+.+.....++..++.+..|+++||+ |||+++..+..+..++.+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~ 304 (408)
T PRK09874 226 VTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIP 304 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHH
Confidence 333444445455667777787765442221 234555566777888899999999995 9999999998877777666
Q ss_pred HHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHH
Q 044175 99 ITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLA 178 (537)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 178 (537)
..... +.+.+++.+++.|++.+...+...+.+.|..++++ +++.++..+...++|
T Consensus 305 ~~~~~-------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g 359 (408)
T PRK09874 305 MSFVQ-------------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIFSYNQSFRDIG 359 (408)
T ss_pred HHHhc-------------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeeehHHHHHHHHH
Confidence 55442 45667788889999999999998888888888776 889999988889999
Q ss_pred HHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHh
Q 044175 179 AVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVI 215 (537)
Q Consensus 179 ~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~ 215 (537)
..++|.++|++.+..||+..|++.+++.+++.+..+.
T Consensus 360 ~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 360 NVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred HHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888776666555443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.6e-11 Score=121.87 Aligned_cols=162 Identities=19% Similarity=0.239 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhh
Q 044175 25 SLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAY 104 (537)
Q Consensus 25 ~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~ 104 (537)
.+...++..+..+.+.|+++ .|++. .+.....+.++..++.++.|++.||+ ||||.+..+..+..++.++.....
T Consensus 226 ~l~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~- 300 (392)
T PRK12382 226 ALQGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLAP- 300 (392)
T ss_pred HHHHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHcc-
Confidence 34445666666777888764 46543 45566667778889999999999995 999999999888888877665542
Q ss_pred ccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 044175 105 SEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVT 184 (537)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~ 184 (537)
+....++.+++.|++.+...+...+...|.+|+++ |++.++.++...++|..++|.
T Consensus 301 ------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~ig~~ 356 (392)
T PRK12382 301 ------------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGYAAFQDIAYGVSGP 356 (392)
T ss_pred ------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 45566778889999999888888888888888766 899999999999999999999
Q ss_pred HHhhhcccccchHHHHHHHHHHHHHHHHHHh
Q 044175 185 AIVYVSTEKAWWGGFLISSIVTFIGFIALVI 215 (537)
Q Consensus 185 ~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~ 215 (537)
+.+++.++.||+..|.+.+...+++.+..+.
T Consensus 357 ~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 357 LAGMLATSFGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998887766666555443
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.4e-11 Score=123.50 Aligned_cols=176 Identities=16% Similarity=0.118 Sum_probs=122.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccc--hhHHH-HHHHHH
Q 044175 15 RACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLS--RFATC-LIFGTL 91 (537)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G--r~~~~-~~~~~~ 91 (537)
+.+|...+..++....+++...++|.|++++.|++..+++.....+.++..++.+++|+++|| ++ ||+.. .....+
T Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr-~~~~r~~~~~~~~~~l 331 (452)
T PRK11273 253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL 331 (452)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCcchHHHHHHHH
Confidence 346677777777778888899999999999899999999999888899999999999999999 54 44432 222233
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHH
Q 044175 92 EVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYF 171 (537)
Q Consensus 92 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 171 (537)
..++.+...... ..+.....+..++.|.+..........+..|.+|++. |+++.++.
T Consensus 332 ~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~ 388 (452)
T PRK11273 332 VTIATIVYWLNP-----------------AGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFT 388 (452)
T ss_pred HHHHHHHHHHhc-----------------ccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh------hhhHHHHH
Confidence 333333332221 0123333344444444332222233445678888877 89999998
Q ss_pred HHHHHHHHHH-HHHHHhhhcccccchHHHHHHHHHHHHHHHHHH
Q 044175 172 LLTTTLAAVI-GVTAIVYVSTEKAWWGGFLISSIVTFIGFIALV 214 (537)
Q Consensus 172 ~~~~~~g~~i-~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~ 214 (537)
+...++|+.+ +|.+.|++.++.||+..|.+.+..++++++...
T Consensus 389 ~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 389 GLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 8878887654 799999999999999999877766655554443
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-10 Score=120.14 Aligned_cols=166 Identities=11% Similarity=-0.048 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHH
Q 044175 20 IFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMI 99 (537)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~ 99 (537)
+....++....++....+.+.|+++ .|++..+.+.+.....++..++.++.|+++||+ |||+.+..+.+...++....
T Consensus 225 ~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~ 302 (406)
T PRK11551 225 LWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASLAAL 302 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHH
Confidence 3344455556667777788888865 799999999999999999999999999999995 99999988766666665544
Q ss_pred HHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHH
Q 044175 100 TVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAA 179 (537)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 179 (537)
.... +...+.+..++.|++.+...+...++..|.+|+++ |++..++.+....+|.
T Consensus 303 ~~~~-------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~ 357 (406)
T PRK11551 303 AAAP-------------------SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVGAAVAVGRLGS 357 (406)
T ss_pred HhcC-------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhhHHHHhhhHHH
Confidence 4432 34445566677888877778888899999999887 8999999999999999
Q ss_pred HHHHHHHhhhccccc-chHHHHHHHHHHHHHHHH
Q 044175 180 VIGVTAIVYVSTEKA-WWGGFLISSIVTFIGFIA 212 (537)
Q Consensus 180 ~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~~ 212 (537)
.++|.++|++.+..+ |...+.+.....+++.+.
T Consensus 358 ~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 391 (406)
T PRK11551 358 MAGPLLAGQLLALGRSTVGVIGASIPVILVAALA 391 (406)
T ss_pred HHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHH
Confidence 999999999887644 555555555444444433
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.2e-11 Score=120.89 Aligned_cols=157 Identities=13% Similarity=0.082 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHH
Q 044175 20 IFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMI 99 (537)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~ 99 (537)
+.....+..........+++.|+.+++|++..+.+.+.+...++..++.++.|+++||+ |||+.+..+.++..+.....
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~ 321 (405)
T TIGR00891 243 LVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLAGQLLIIPV 321 (405)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHHHHHHHHHH
Confidence 34444444555556677889999999999999999999999999999999999999995 99999988877654333322
Q ss_pred HHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHH
Q 044175 100 TVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAA 179 (537)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 179 (537)
.... .+...+.+..++.++..+...+..++++.|.+|+++ |++.++..+...++|.
T Consensus 322 ~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~g~ 377 (405)
T TIGR00891 322 FAIG------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ------RAAGLGFTYQLGNLGG 377 (405)
T ss_pred HHhC------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch------hHHHhhHHHHHHHHHH
Confidence 2211 234455566667777777777888899999999877 8999999998999999
Q ss_pred HHHHHHHhhhccccc-chHHHHH
Q 044175 180 VIGVTAIVYVSTEKA-WWGGFLI 201 (537)
Q Consensus 180 ~i~~~~~~~l~~~~g-~~~~f~i 201 (537)
.++|.+.|++.+..| |+..+..
T Consensus 378 ~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 378 ALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred HHHHHHHHHHHHhccccchhHHh
Confidence 999999999999888 7765543
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.2e-10 Score=117.48 Aligned_cols=160 Identities=15% Similarity=0.129 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHh
Q 044175 24 SSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQA 103 (537)
Q Consensus 24 ~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~ 103 (537)
.+...+.+.....+++.|+++ .|.++.+.+...+...+...++.++.|+++||+ |||+++..+..+..++..... .
T Consensus 209 ~~~~~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~-~- 284 (381)
T PRK03633 209 CIISGIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML-S- 284 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh-h-
Confidence 333444455556778888865 699999999999999999999999999999995 999999988887777665432 1
Q ss_pred hccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHH
Q 044175 104 YSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGV 183 (537)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~ 183 (537)
. ......+++.|++.+...|...+.+.|..|+++ ++...+....+.++|..++|
T Consensus 285 -------------------~-~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~igp 338 (381)
T PRK03633 285 -------------------Q-AAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALLLSYTVGSLLGP 338 (381)
T ss_pred -------------------h-HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 1 123345667777777778888888888887654 55666666677899999999
Q ss_pred HHHhhhcccccchHHHHHHHHHHHHHHHHH
Q 044175 184 TAIVYVSTEKAWWGGFLISSIVTFIGFIAL 213 (537)
Q Consensus 184 ~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~ 213 (537)
.++|++.++++|++.|.+.+.+.++..+..
T Consensus 339 ~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~ 368 (381)
T PRK03633 339 SFTAMLMQNYSDNLLFIMIASVSFIYLLML 368 (381)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 999999999999999988776665554433
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.6e-10 Score=117.04 Aligned_cols=169 Identities=11% Similarity=-0.022 Sum_probs=140.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHH
Q 044175 15 RACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVL 94 (537)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i 94 (537)
|.++...+..++...+++...++.++|+++ +|.++.+.+.+.....+...+..++.|++.||+ |+|+.+.++.+...+
T Consensus 205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~ 282 (382)
T TIGR00902 205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVG 282 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHH
Confidence 456667777788888888888999999965 899999999999999999999999999999995 999999999999999
Q ss_pred HHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHH-H
Q 044175 95 ALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFL-L 173 (537)
Q Consensus 95 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~ 173 (537)
..+++.... +.+.+++..++.|++.|...+....++.+. |+++ +++..+++. .
T Consensus 283 ~~~~~~~~~-------------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~~q~~~~~~ 336 (382)
T TIGR00902 283 RWAIIGAIE-------------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAKLQALYNAL 336 (382)
T ss_pred HHHHHHhHh-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHHHHHHHHHH
Confidence 988887653 667788889999999999999999999987 7655 677777765 4
Q ss_pred HHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHH
Q 044175 174 TTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIA 212 (537)
Q Consensus 174 ~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~ 212 (537)
+..+|..++|.++|++.+++|+ ..|++.+.+.++++++
T Consensus 337 ~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 337 AMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 6679999999999999999886 4566655555544433
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.4e-11 Score=123.74 Aligned_cols=165 Identities=13% Similarity=-0.005 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc---CCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHH
Q 044175 24 SSLENMGFIANAISMVLYFKNEM---HFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMIT 100 (537)
Q Consensus 24 ~~~~~~~~~~~~~~~~~yl~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~ 100 (537)
..+....+......++.|+.+.+ +.+..+.+.+.+...+...++.+++|+++||+ |||+.+..+.++..++.+++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~~~~l~~ 310 (420)
T PRK09528 232 VIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAVRIIGSG 310 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHH
Confidence 33344444444455677765543 56667788999999999999999999999995 999999999888888887777
Q ss_pred HHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHH-HHHHHHHHH
Q 044175 101 VQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNY-FLLTTTLAA 179 (537)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~ 179 (537)
++. +...+++.+++.+++.+...+....++.|.+|++. +++..+. +....++|.
T Consensus 311 ~~~-------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~~lg~ 365 (420)
T PRK09528 311 FAT-------------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAKQLGA 365 (420)
T ss_pred hcc-------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHHHHHH
Confidence 653 56677788899998888877777888899888766 5665544 445678999
Q ss_pred HHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHH
Q 044175 180 VIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALV 214 (537)
Q Consensus 180 ~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~ 214 (537)
.++|.+.|++.+..||+..|.+.+++.++..+..+
T Consensus 366 ~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~ 400 (420)
T PRK09528 366 VFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISV 400 (420)
T ss_pred HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999989999999876666554444333
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-10 Score=120.44 Aligned_cols=155 Identities=12% Similarity=-0.040 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 044175 31 FIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHP 110 (537)
Q Consensus 31 ~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 110 (537)
.++...+.+.|+++.+|.++.+.+++.+...++..++.++.|+++||. ++++.+..+.+...++.++.....
T Consensus 239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~------- 310 (417)
T PRK10489 239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLMP------- 310 (417)
T ss_pred HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHccc-------
Confidence 355667788899888999999999999999999999999999999994 888888888877777776665442
Q ss_pred CCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 044175 111 PDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVS 190 (537)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~ 190 (537)
+.....++.++.|++.+...+...+++.|..|++. |++.+++++...++|..++|.+.|++.
T Consensus 311 ------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~l~G~l~ 372 (417)
T PRK10489 311 ------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLWTAQNVTGDAIGAALLGGLG 372 (417)
T ss_pred ------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHHHHHHhhhHhHHHHHHHHHH
Confidence 44556677788888888777777888999998766 899999999888999999999999999
Q ss_pred ccccchHHHHHHHHHHHHHHH
Q 044175 191 TEKAWWGGFLISSIVTFIGFI 211 (537)
Q Consensus 191 ~~~g~~~~f~i~~~~~~~~~~ 211 (537)
+.+|++..+.+.+....+..+
T Consensus 373 ~~~g~~~~~~~~~~~~~~~~~ 393 (417)
T PRK10489 373 AMMTPVASASASGFGLLIIGV 393 (417)
T ss_pred HHhchhhHHHHHHHHHHHHHH
Confidence 988988887765554443333
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.9e-10 Score=120.13 Aligned_cols=177 Identities=17% Similarity=0.102 Sum_probs=119.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhcc-chhHHH-HHHHHHHH
Q 044175 16 ACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFL-SRFATC-LIFGTLEV 93 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~-Gr~~~~-~~~~~~~~ 93 (537)
.++.+.+..++..+.++++..+++.|+.+++|++..+++...+.+.++..++.+++|+++||+. ++|+.. ....+...
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~ 323 (434)
T PRK11663 244 YIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGIL 323 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHH
Confidence 4566666666677777788889999998889999999999999999999999999999999941 222222 22111111
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHH
Q 044175 94 LALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLL 173 (537)
Q Consensus 94 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 173 (537)
++......... .+.....+..+..|++............+|.+|+++ |++..++.+.
T Consensus 324 ~~~~~~~~~~~-----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~ 380 (434)
T PRK11663 324 LSVGSLWLMPF-----------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA------AGAATGFVGL 380 (434)
T ss_pred HHHHHHHHccc-----------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh------HHhHHHHHHH
Confidence 12111111110 122222233333443322222223445678887666 8999999999
Q ss_pred HHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHh
Q 044175 174 TTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVI 215 (537)
Q Consensus 174 ~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~ 215 (537)
..++|..++|.+.|++.+..||+..|++.+++.+++.+..+.
T Consensus 381 ~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 422 (434)
T PRK11663 381 FAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLP 422 (434)
T ss_pred HHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998877766655554443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.8e-11 Score=123.73 Aligned_cols=170 Identities=14% Similarity=0.074 Sum_probs=133.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhc-cchhHHHHHHH--HHH
Q 044175 16 ACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTF-LSRFATCLIFG--TLE 92 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~-~Gr~~~~~~~~--~~~ 92 (537)
.++......++..++++....+++.|++ ++|++..+++.+.+...++..++.+++|+++||+ +++|+...++. +..
T Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 320 (455)
T TIGR00892 242 GFLVYLSGNVIMFLGFFAPIIFLVPYAK-DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFN 320 (455)
T ss_pred hHHHHHHHHHHHHHHccchHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHH
Confidence 4566666677777888888889999986 4799999999999999999999999999999983 23444444433 333
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHH
Q 044175 93 VLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFL 172 (537)
Q Consensus 93 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 172 (537)
.++.+++... .+.+.+++.+++.|++.+...++..+.+.|.+|+++ +++.++++.
T Consensus 321 ~l~~ll~~~~-------------------~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------~g~~~g~~~ 375 (455)
T TIGR00892 321 GLTHLLCALA-------------------GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------FSSAVGLVT 375 (455)
T ss_pred HHHHHHHHHh-------------------chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------HhhHHhHHH
Confidence 3333333333 256677788999999999999999999999998776 899999999
Q ss_pred HHHHHHHHHHHHHHhhhcccc-cchHHHHHHHHHHHHHHH
Q 044175 173 LTTTLAAVIGVTAIVYVSTEK-AWWGGFLISSIVTFIGFI 211 (537)
Q Consensus 173 ~~~~~g~~i~~~~~~~l~~~~-g~~~~f~i~~~~~~~~~~ 211 (537)
...++|..++|.++|++.+.. +|+..|++.+++.+++.+
T Consensus 376 ~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 376 IVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 999999999999999998876 599999887776555544
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.9e-10 Score=116.34 Aligned_cols=176 Identities=15% Similarity=0.106 Sum_probs=127.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHH-HHHHHHHH
Q 044175 15 RACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATC-LIFGTLEV 93 (537)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~-~~~~~~~~ 93 (537)
|.++...+..++....++....+.+.|+++++|.+..+.+.+.....+...++.+++|+++||+ |||+.. ........
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~ 293 (399)
T TIGR00893 215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAI 293 (399)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHH
Confidence 3567777778888888888899999999999999999999999999999999999999999995 998621 11111111
Q ss_pred HHHH---HHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHH
Q 044175 94 LALV---MITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNY 170 (537)
Q Consensus 94 i~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 170 (537)
++.+ +...... . ............+.+.+.+ ..+...++.+|.+|+++ |++.+++
T Consensus 294 ~~~~~~~~~~~~~~---~------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~g~~~~~ 351 (399)
T TIGR00893 294 IAGLVLSLLMFATN---Y------------VNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNI------AGLTGGL 351 (399)
T ss_pred HHHHHHHHHHHHhc---c------------chhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhH------HHHHHHH
Confidence 1111 1111110 0 0122333333333344444 78889999999999877 8999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccccc-chHHHHHHHHHHHHHHHHH
Q 044175 171 FLLTTTLAAVIGVTAIVYVSTEKA-WWGGFLISSIVTFIGFIAL 213 (537)
Q Consensus 171 ~~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~~~ 213 (537)
.....++|..++|.+.+++.+..| |+..|.+.++..+++.+..
T Consensus 352 ~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 352 INSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY 395 (399)
T ss_pred HHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888 9988887776655554443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.7e-10 Score=110.56 Aligned_cols=177 Identities=14% Similarity=0.076 Sum_probs=147.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHH
Q 044175 14 FRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEV 93 (537)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~ 93 (537)
.+.++...+..++...+.|..++++.+++++.-|++..+.++++..|.++..++..++|+++|| +.|+++.....+.+
T Consensus 210 ~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a 287 (394)
T COG2814 210 RPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLA 287 (394)
T ss_pred CchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHH
Confidence 4578889999999999999999999999999999999999999999999999999999999999 78888888888888
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHH
Q 044175 94 LALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLL 173 (537)
Q Consensus 94 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 173 (537)
+..+.+.+.. .+.....+..++.|++.+........-.++..| +. +..+.+++..
T Consensus 288 ~~~l~l~~~~------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p-~~------~~~a~sl~~a 342 (394)
T COG2814 288 LALLALTFTG------------------ASPALALALLFLWGFAFSPALQGLQTRLARLAP-DA------ADLAGSLNVA 342 (394)
T ss_pred HHHHHHHHhc------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccCC-Cc------hHHHHHHHHH
Confidence 8777766654 245566666666777777666666666666333 33 5778888888
Q ss_pred HHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHhcc
Q 044175 174 TTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGK 217 (537)
Q Consensus 174 ~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~ 217 (537)
+.|+|..+|..++|.+.+++|+....+++++..+++++..+...
T Consensus 343 a~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~ 386 (394)
T COG2814 343 AFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSA 386 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888877777665543
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.2e-10 Score=118.44 Aligned_cols=153 Identities=14% Similarity=0.106 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHH-HH
Q 044175 21 FVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALV-MI 99 (537)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~-l~ 99 (537)
+...++....++.+..+.+.|+++.+|++..+.++......++..++.+++|+++||+ ||||++..+..+..+... ..
T Consensus 244 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~ 322 (434)
T PRK15075 244 MLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLAILTAYPAL 322 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHH
Confidence 3444456677888889999999988999999999888888899999999999999995 999998876554433222 11
Q ss_pred HHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHH-HH
Q 044175 100 TVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTT-LA 178 (537)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~g 178 (537)
..... ..+.....+..++.+++.|...+...++..|.+|++. |++++++.+...+ ++
T Consensus 323 ~~~~~----------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~------rg~~~g~~~~~~~~~~ 380 (434)
T PRK15075 323 SWLVA----------------APSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV------RTAGFSLAYSLATAIF 380 (434)
T ss_pred HHHHc----------------CCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc------cchheeHHHHHHHHHH
Confidence 11110 1122333334445566666666767788999999888 8888888654444 45
Q ss_pred HHHHHHHHhhhcccccch
Q 044175 179 AVIGVTAIVYVSTEKAWW 196 (537)
Q Consensus 179 ~~i~~~~~~~l~~~~g~~ 196 (537)
+.++|.+.+++.+..|+.
T Consensus 381 g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 381 GGFTPAISTWLIHVTGDK 398 (434)
T ss_pred hhhHHHHHHHHHHhcCCc
Confidence 778999999998887753
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.1e-10 Score=114.22 Aligned_cols=176 Identities=11% Similarity=0.057 Sum_probs=129.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHH-HHHHHHHH
Q 044175 16 ACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCL-IFGTLEVL 94 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~-~~~~~~~i 94 (537)
.++...+..++...++++..++.+.|++ ++|++..+.+.+.....++..++.++.|+++||+ |||+.+. .+.+...+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~~ 300 (402)
T TIGR00897 223 NVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCGI 300 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHH
Confidence 4566666777888888999999998885 5899999999999999999999999999999995 9988764 33333344
Q ss_pred HHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHH
Q 044175 95 ALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLT 174 (537)
Q Consensus 95 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 174 (537)
+.+.+...... . .++....++..++.|++.+...+ ..+...|..| ++ |++.+++.+..
T Consensus 301 ~~~~l~~~~~~--~------------~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~------~g~~~g~~~~~ 358 (402)
T TIGR00897 301 FTLALYYIPQH--F------------GHSFAVALIIAIALGIFLAGYVP-LAAVFPTLAP-KH------KGAAMSVLNLS 358 (402)
T ss_pred HHHHHHHHHHc--c------------CCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCc-ch------hHHHHHHHHHH
Confidence 33333222100 0 12445556677778887776644 3455666544 34 89999999999
Q ss_pred HHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHh
Q 044175 175 TTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVI 215 (537)
Q Consensus 175 ~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~ 215 (537)
.++|..++|.+++++.+..||...|++.+++.+++.+...+
T Consensus 359 ~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 359 AGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999899999988877766665554443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.5e-10 Score=116.89 Aligned_cols=179 Identities=16% Similarity=0.147 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHH-HHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHH
Q 044175 17 CGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLT-NLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLA 95 (537)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~ 95 (537)
.+.+.+..++...+.+....+.++|+.+++|++..+.+.+.. ...++..++.+++|+++||+ ||||.+.++.++..++
T Consensus 224 ~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~ 302 (491)
T PRK11010 224 AWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVS 302 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHH
Confidence 344444445555666666778888988889999999999875 55679999999999999995 9999888776655555
Q ss_pred HHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHH
Q 044175 96 LVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTT 175 (537)
Q Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 175 (537)
.+........ ..+...+.+..+++.++.|...+...++..+..+++. +++.++..+...
T Consensus 303 ~l~~~~l~~~---------------~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~gl~~s~~ 361 (491)
T PRK11010 303 NAGYWLLSIT---------------DKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQFALLSALS 361 (491)
T ss_pred HHHHHHHHhc---------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHHHHHHH
Confidence 4333221100 0133334444555555555555666777888888776 577788888888
Q ss_pred HHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHhcc
Q 044175 176 TLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGK 217 (537)
Q Consensus 176 ~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~ 217 (537)
++|..+++.++|++.+..||+..|.+..++.+++++.....+
T Consensus 362 ~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 362 AVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR 403 (491)
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988888999999989999999888877777666655443
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.8e-10 Score=115.19 Aligned_cols=183 Identities=16% Similarity=0.106 Sum_probs=149.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchh--HHHHHHHHH
Q 044175 14 FRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRF--ATCLIFGTL 91 (537)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~--~~~~~~~~~ 91 (537)
.|.+...++.-++-+-+...+......|.++++|++..+...+.....+.+.++++++|++.||+ |.| ++++.++++
T Consensus 280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~~ 358 (477)
T PF11700_consen 280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLIL 358 (477)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHH
Confidence 35666677777888889899999999999999999999999999999999999999999999995 999 898888877
Q ss_pred HHHHHHHHHH--HhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHH
Q 044175 92 EVLALVMITV--QAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFN 169 (537)
Q Consensus 92 ~~i~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 169 (537)
+.+..+...+ ...... .++.+.+++.-++.|+..|..++..-++.+|..|+++ .+..|+
T Consensus 359 ~~~i~~~g~~G~~~~~~g-------------~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------e~efFg 419 (477)
T PF11700_consen 359 WIIIPLYGLFGFWPSFFG-------------LKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------EAEFFG 419 (477)
T ss_pred HHHHHHHHHHHhhhcccC-------------cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------hhHHHH
Confidence 7544433322 110000 1255667777789999999999999999999999887 799999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccc-chHHHHHHHHHHHHHHHHHHhc
Q 044175 170 YFLLTTTLAAVIGVTAIVYVSTEKA-WWGGFLISSIVTFIGFIALVIG 216 (537)
Q Consensus 170 ~~~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~~~ 216 (537)
++.+..-..+.+||++.+.+.+..| .|..+....++.++++++++..
T Consensus 420 ly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 420 LYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFV 467 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999988776 8888877666666666665543
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.1e-10 Score=117.18 Aligned_cols=169 Identities=15% Similarity=-0.010 Sum_probs=116.7
Q ss_pred HHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 044175 32 IANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPP 111 (537)
Q Consensus 32 ~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 111 (537)
+.+..+.+ +..+++|++..+.+.......++..++.+++|+++||+ |||+.+.++.++..++.+++........ ++
T Consensus 301 ~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 376 (481)
T TIGR00879 301 NAIMYYSP-TIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICLFVLGILGASFV--TG 376 (481)
T ss_pred eehHHHHH-HHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHhhccc--CC
Confidence 33333444 44467899998888888889999999999999999995 9999999998888887776653211000 00
Q ss_pred CCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 044175 112 DCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVST 191 (537)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~ 191 (537)
.+ +..+...+....+..+.......+....+..|.+|+++ |++..+......++|..++|.+.+++.+
T Consensus 377 ----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~lg~~i~~~~~~~~~~ 444 (481)
T TIGR00879 377 ----SS--KSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL------RPKGISIAVAANWLANFIVGFLFPTMLE 444 (481)
T ss_pred ----cc--cchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00022222222222222222334667777899999777 8999999999999999999999999988
Q ss_pred cccchHHHHHHHHHHHHHHHHHHhc
Q 044175 192 EKAWWGGFLISSIVTFIGFIALVIG 216 (537)
Q Consensus 192 ~~g~~~~f~i~~~~~~~~~~~~~~~ 216 (537)
+.+|+..|++.+++.+++.+..++.
T Consensus 445 ~~~~~~~f~~~~~~~~~~~i~~~~~ 469 (481)
T TIGR00879 445 SIGVGGVFIFFGGLNVLGLIFVYFF 469 (481)
T ss_pred hcCccceehhHHHHHHHHHHHHhee
Confidence 8899988887776665555554443
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.9e-10 Score=110.84 Aligned_cols=184 Identities=13% Similarity=0.056 Sum_probs=145.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHH
Q 044175 14 FRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEV 93 (537)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~ 93 (537)
-|..|.+....+...-++-+...+++.|++++++.++.+++.....+.+...+..+++|+||||+ |.+|+........+
T Consensus 217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~ 295 (417)
T COG2223 217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMA 295 (417)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHH
Confidence 45789999999999889999999999999999999999999999999999999999999999995 99999999988888
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHH
Q 044175 94 LALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLL 173 (537)
Q Consensus 94 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 173 (537)
++........+ .... ..+...++...+.+++..|.-...+..++...++++ -+...++...
T Consensus 296 ~~~~~l~~~~~--~~~~----------~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-------~G~v~G~vga 356 (417)
T COG2223 296 LAAALLSLFLT--GFGH----------GGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-------TGAVTGIVGA 356 (417)
T ss_pred HHHHHHHcccc--cccc----------CcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-------hhHHHHHHHH
Confidence 88877776531 0000 124555555556666667777777777777787753 4778888888
Q ss_pred HHHHHHHHHHHHHhhhccccc-chHHHHHHHHHHHHHHHHHHhcc
Q 044175 174 TTTLAAVIGVTAIVYVSTEKA-WWGGFLISSIVTFIGFIALVIGK 217 (537)
Q Consensus 174 ~~~~g~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~~~~ 217 (537)
..++|+..-|..-+...+..| +...|++...+.+++.+..+..+
T Consensus 357 ~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y 401 (417)
T COG2223 357 IGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALY 401 (417)
T ss_pred hccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889998888888888777776 88888877776666666554443
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-09 Score=114.46 Aligned_cols=169 Identities=15% Similarity=0.068 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHH-H
Q 044175 24 SSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITV-Q 102 (537)
Q Consensus 24 ~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~-~ 102 (537)
.++....+|+...+++.|+.+++|++..+.+...+.......++.++.|+++||+ |||+.+.++.++..+....... .
T Consensus 252 ~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~ 330 (432)
T PRK10406 252 TAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALFTVPILSAL 330 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHH
Confidence 3344778889999999999988999999999888888888889999999999995 9999888776654433322221 1
Q ss_pred hhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHH-HHHH
Q 044175 103 AYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTL-AAVI 181 (537)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~i 181 (537)
.. .++....+....+...+.+...+....+.+|.+|++. |++++++.+...++ ++..
T Consensus 331 ~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r~t~~g~~~~~g~~~~g~~ 388 (432)
T PRK10406 331 QN----------------VSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------RALGVGLSYAVANALFGGS 388 (432)
T ss_pred Hc----------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------cchhhhHHHHHHHHHHHhH
Confidence 10 0122221111222222333334556778899999988 99999998865553 3445
Q ss_pred HHHHHhhhcccccchHHHHHHHHHHHHHHHHHHh
Q 044175 182 GVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVI 215 (537)
Q Consensus 182 ~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~ 215 (537)
+|.+.+++.....|...++..++..+++.+..++
T Consensus 389 ~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 389 AEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 7888886644323555565555544444444333
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.8e-10 Score=102.62 Aligned_cols=174 Identities=13% Similarity=0.126 Sum_probs=135.5
Q ss_pred hhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHH
Q 044175 8 IKQKGGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLI 87 (537)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~ 87 (537)
..++.+.+++|++.++.++-..+.+-..+.-+.+.++++|+|+..++.+.+.........+|+.|.++||+ ||+-..+.
T Consensus 257 tdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv~ 335 (459)
T KOG4686|consen 257 TDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWVA 335 (459)
T ss_pred ccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhHH
Confidence 34455677899999988888777777777788999999999999999999999999999999999999996 99987776
Q ss_pred HHHH-HHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhh
Q 044175 88 FGTL-EVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALAS 166 (537)
Q Consensus 88 ~~~~-~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 166 (537)
+..+ ..++...+.+.. .-=+.++.+.|++..+......+.++...|+++ .++
T Consensus 336 ~a~~~tl~~H~~l~Ft~---------------------lsPy~~m~~lGLsysllAcslWP~va~~vpE~q------LGT 388 (459)
T KOG4686|consen 336 SACILTLLGHSGLFFTF---------------------LSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQ------LGT 388 (459)
T ss_pred HHHHHHHHHhhhHHhhh---------------------ccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH------hcc
Confidence 6544 445555555542 112456677777777665557777888888887 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccc---chHHHHHHHHHHHHH
Q 044175 167 YFNYFLLTTTLAAVIGVTAIVYVSTEKA---WWGGFLISSIVTFIG 209 (537)
Q Consensus 167 ~~~~~~~~~~~g~~i~~~~~~~l~~~~g---~~~~f~i~~~~~~~~ 209 (537)
+++..+...|+|-++.|+++|.+.++-| |--.|.+....+.+.
T Consensus 389 aygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~ 434 (459)
T KOG4686|consen 389 AYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALT 434 (459)
T ss_pred hHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999987654 444566555544433
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.2e-08 Score=103.66 Aligned_cols=364 Identities=13% Similarity=0.069 Sum_probs=205.9
Q ss_pred hHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhcCCchhhH-HHHHHH----HHHHHHHHhhHhHHHhhhccchhHHHHH
Q 044175 16 ACGFIFVLSSLENMGFIANA---ISMVLYFKNEMHFNLAGA-SNTLTN----LMGSTFLLCLVGGFISDTFLSRFATCLI 87 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~---~~~~~yl~~~l~~~~~~~-~~~~~~----~~~~~~~~~~~~G~laD~~~Gr~~~~~~ 87 (537)
...-+....+...++++... .....+.....+.+..+. +..... ..+...+.+++-|.++||+ |||..+.+
T Consensus 19 ~~~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~ 97 (463)
T KOG2816|consen 19 SMRHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLL 97 (463)
T ss_pred hhhHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHH
Confidence 34445556666666666555 444445444444333322 222222 3577888999999999996 99999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHh--cccccccchhhcccCCCCCChhhhhhhh
Q 044175 88 FGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALG--SGGVRGALPALGAGQFDEKDPKGAKALA 165 (537)
Q Consensus 88 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g--~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 165 (537)
....+.+..+.+.+.. +++++ +.++. .+.......++++|...+++ |.
T Consensus 98 ~~~~~~l~~~~~~~~~---------------------~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~------R~ 147 (463)
T KOG2816|consen 98 PLFGTILPALCLLFQG---------------------YWFFL---LLGLSGGFSAIFSVGFAYVADISSEEE------RS 147 (463)
T ss_pred HHHHHHHhHHHHHHHH---------------------HHHhh---hcccccchhhhhhhhhhheeeccchhH------HH
Confidence 9999888888777652 23332 33333 33456777888999988877 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHhccccccccCCCCC-chhhHHHHHHHHHHhc
Q 044175 166 SYFNYFLLTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGES-PLVRVSQVVVVAIKNR 244 (537)
Q Consensus 166 ~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~ 244 (537)
..+++...+...+..++|..++++....|.-..|.++.+...+..+......|+...++.+++ +.++
T Consensus 148 ~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~------------ 215 (463)
T KOG2816|consen 148 SSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRE------------ 215 (463)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccccccccc------------
Confidence 999999888889999999999999998999999999888877777666555444322221110 0000
Q ss_pred cCCCCCChhhhhhhhhhhccCCccccCCCCchhHhhhhccCCCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHH
Q 044175 245 KLSLPENPEELYEINEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVKILTRMMPILASTILMNT 324 (537)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 324 (537)
..+.. ...... . +.++.... .+..|..+ .+.+. .......
T Consensus 216 --~~~~~------------------~~~~~~-----~-----------~~~~~~~~--~~~~r~~l-~l~l~-~~~~~~~ 255 (463)
T KOG2816|consen 216 --LTPGS------------------LDSSHV-----A-----------DAFQSLTK--VGPDRLLL-LLLLV-AFLSSLP 255 (463)
T ss_pred --cCCCc------------------ccchhh-----h-----------hhhhhhcc--cCCCccch-HHHHH-HHHHHHH
Confidence 00000 000000 0 00000000 00111111 11111 1111111
Q ss_pred hhhhcc-hhhheeccccCCCCCccccCCCcccccchHhHHHHhhhhcchhccccccccCCCCCCCchHHHHHHHHHHHHH
Q 044175 325 CLAQLQ-TFSVTQGAYMDPQLGSIKVPTPSIPVIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVS 403 (537)
Q Consensus 325 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~ 403 (537)
...+.. ..+.+....+.-+ ...-+.+.........+...+. .+...+.. ...+.+..|+..-.++
T Consensus 256 ~~~~~~~~~~~yl~~~f~w~----~~~~s~~~~~~~~~~~i~~l~~----~~~l~~~l------~~~~~i~lGl~~~~~~ 321 (463)
T KOG2816|consen 256 EAGGASDVLLLYLKAKFGWN----KKEFSDLLSLVSILGIISQLLL----LPLLSSIL------GEKRLISLGLLSEFLQ 321 (463)
T ss_pred HhcCceeEEEEEEeeecCcC----HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH------hhhhHhhHHHHHHHHH
Confidence 111111 1111211111111 1111111222222222222111 11222211 2223677888888888
Q ss_pred HHHHHHHHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchhHHHHHHHHHHHHHHHHHHHHH
Q 044175 404 MTIAGFVEVQRRNAFNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLSFGNFLSSVF 483 (537)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~~~~~l 483 (537)
.++.++.. +.|.+. .............|...+++..+..++.+|+.+++......+.+.+++.+
T Consensus 322 ~~~~af~~---------------~~w~~~-~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~ 385 (463)
T KOG2816|consen 322 LLLFAFAT---------------ETWMMF-AAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPAL 385 (463)
T ss_pred HHHHHHhc---------------cchhhh-HHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHH
Confidence 88888752 223223 33444445567789999999999999999999999999999999999998
Q ss_pred HHHhhhhhc
Q 044175 484 VDIINAVTK 492 (537)
Q Consensus 484 ~~~i~~~~~ 492 (537)
...+...+.
T Consensus 386 ~~~i~~~t~ 394 (463)
T KOG2816|consen 386 YGNIFALTL 394 (463)
T ss_pred HHHHHHHHH
Confidence 887765553
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.6e-09 Score=103.10 Aligned_cols=134 Identities=11% Similarity=0.018 Sum_probs=102.7
Q ss_pred HHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCC
Q 044175 37 SMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKS 116 (537)
Q Consensus 37 ~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 116 (537)
.+.+|..+.+| +...+-|+..+|++.+....+.+-|+.||+ |=|.+.+++..+-.+|..+-..+.. |...
T Consensus 66 ~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~llgt~ln~iGa~Ir~iss~-p~v~------- 135 (480)
T KOG2563|consen 66 PINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALLLGTVLNGIGAWIRLISSL-PFVP------- 135 (480)
T ss_pred hHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHHHHHHHHHHHHHHhhhccC-cccc-------
Confidence 44566666677 777788999999999999999999999995 9999999999999999988777642 1110
Q ss_pred CccCCchh--HHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 044175 117 SCVKGGIA--AYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVST 191 (537)
Q Consensus 117 ~~~~~~~~--~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~ 191 (537)
..+ ...+.+..+.+.++-.+...-+...+-+|++++ |+.+...-.++..+|.+++.++...+..
T Consensus 136 -----~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q------ra~A~~~~v~~n~LGvavg~llppilV~ 201 (480)
T KOG2563|consen 136 -----PLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ------RAIATVLGVMGNPLGVAVGFLLPPILVP 201 (480)
T ss_pred -----ccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch------hhhhhhHHHhcchHHHHHHhhccceecC
Confidence 123 367778888888777776666677777899877 8888877666666777777766666543
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.1e-09 Score=113.53 Aligned_cols=157 Identities=11% Similarity=-0.009 Sum_probs=123.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHH
Q 044175 16 ACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLA 95 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~ 95 (537)
.....++..++..+++.......+.|++..+|.++.+.+++.....++..++.++.|+++||+ |||+++..+..+..++
T Consensus 262 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~ 340 (471)
T PRK10504 262 TFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLALV 340 (471)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHH
Confidence 455566667777777666666778888878999999999999888888888889999999995 9999999998888777
Q ss_pred HHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHH
Q 044175 96 LVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTT 175 (537)
Q Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 175 (537)
..++..... ......+.+..++.|++.+...+....+..+..|+++ ++..++..+...
T Consensus 341 ~~~~~~~~~----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~ 398 (471)
T PRK10504 341 SLLFMLVAL----------------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL------ASSGNSLLSMIM 398 (471)
T ss_pred HHHHHhccc----------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh------ccchHHHHHHHH
Confidence 666554321 1123334455677888888888888888889888776 888999998899
Q ss_pred HHHHHHHHHHHhhhcccccc
Q 044175 176 TLAAVIGVTAIVYVSTEKAW 195 (537)
Q Consensus 176 ~~g~~i~~~~~~~l~~~~g~ 195 (537)
.+|..+|+.+++.+.+..++
T Consensus 399 ~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 399 QLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 99999999998877554443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.3e-08 Score=100.99 Aligned_cols=79 Identities=11% Similarity=-0.076 Sum_probs=66.9
Q ss_pred chhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccc---------
Q 044175 122 GIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVSTE--------- 192 (537)
Q Consensus 122 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~--------- 192 (537)
.++..++++.++.|.|.+..++..++++++..++++ +++.+++...+..+|..++|.+++.+...
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~ 81 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV 81 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence 378899999999999999999999999999998777 78889999999999999999999876621
Q ss_pred -------ccchHHHHHHHHHH
Q 044175 193 -------KAWWGGFLISSIVT 206 (537)
Q Consensus 193 -------~g~~~~f~i~~~~~ 206 (537)
..|+.+|++.+.+.
T Consensus 82 ~~~~~~~~~~~~~yl~ia~~~ 102 (310)
T TIGR01272 82 ATANAEAAKVHTPYLLLAGAL 102 (310)
T ss_pred hhhhHHHHHHHHHHHHHHHHH
Confidence 36888887544443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.3e-09 Score=111.53 Aligned_cols=158 Identities=16% Similarity=0.131 Sum_probs=127.5
Q ss_pred hhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccch-hHHH
Q 044175 8 IKQKGGFRACGFIFVLSSLENMGFIANAISMVLYFKN-EMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSR-FATC 85 (537)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr-~~~~ 85 (537)
+..+.+||++++..+..++....++...+.+-+|+++ |.+.+.+-.|+++++..++..++.+..|+-..|. |. |+-+
T Consensus 27 ~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~k~Pl 105 (488)
T KOG2325|consen 27 DERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSVKKPL 105 (488)
T ss_pred cccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCcccCH
Confidence 4456799999999999999999988888888899875 5777888889999999999999999999999995 75 7888
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhh
Q 044175 86 LIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALA 165 (537)
Q Consensus 86 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 165 (537)
+.|.++.++|.++.......+ .+...+++++|++.|+|.|.. +..-+++++....++ |.
T Consensus 106 i~s~ii~~~g~llY~~l~~~~--------------~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~d------R~ 164 (488)
T KOG2325|consen 106 IVSFLIAIIGNLLYLALAYVP--------------NGVKYLMLVARILTGVGVGNF-AVLRAYIADASTVED------RP 164 (488)
T ss_pred HHHHHHHHHHHHHHHHHHhcc--------------cchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccc------hH
Confidence 899999999999884433222 126788999999999997764 677899999877666 77
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 044175 166 SYFNYFLLTTTLAAVIGVTAIV 187 (537)
Q Consensus 166 ~~~~~~~~~~~~g~~i~~~~~~ 187 (537)
++++....+..+|..+||.+..
T Consensus 165 rA~a~~~~~~vlg~ilGp~~q~ 186 (488)
T KOG2325|consen 165 RAFAATSGGFVLGIILGPTIQL 186 (488)
T ss_pred HHHHHhhhHHHHHHHHhHHHHH
Confidence 8887766655666666665543
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.3e-09 Score=110.45 Aligned_cols=144 Identities=15% Similarity=0.006 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccC
Q 044175 30 GFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLH 109 (537)
Q Consensus 30 ~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 109 (537)
..+.+..+++.|+++ .|.++.+.+.+.+...++..++.++.|+++||+ |||+.+..+.++..++.++.....
T Consensus 246 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~------ 317 (426)
T PRK12307 246 ANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRIP------ 317 (426)
T ss_pred HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHc------
Confidence 344466788888875 699999999999999999999999999999995 999999988877766655444332
Q ss_pred CCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 044175 110 PPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYV 189 (537)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l 189 (537)
.+....+.+..+..+.+..+..+..+.++.|.+|++. |++++++.+...++|+.++|.+.+++
T Consensus 318 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~~~~gp~~~g~l 380 (426)
T PRK12307 318 -----------QDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTGLIYNLAATSGTFNSMAATWL 380 (426)
T ss_pred -----------cccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------HhhhhhHHHHHHhHHHHHHHHHHHHH
Confidence 0122222222222223333334566778889999777 89999999888899999999999999
Q ss_pred cccccchHH
Q 044175 190 STEKAWWGG 198 (537)
Q Consensus 190 ~~~~g~~~~ 198 (537)
.+.+|+...
T Consensus 381 ~~~~g~~~~ 389 (426)
T PRK12307 381 GITMGLGAA 389 (426)
T ss_pred HHcccHHHH
Confidence 988886554
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.7e-09 Score=106.65 Aligned_cols=170 Identities=11% Similarity=-0.061 Sum_probs=125.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHH
Q 044175 16 ACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLA 95 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~ 95 (537)
.++...+...+....++......+.|+.+++|+++.+.+.......++..++.++.|+++||+ |||+.+.++.++..++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g 294 (406)
T PRK15402 216 RFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAG 294 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Confidence 344455555555555566666778888888999999999888878888899999999999995 9999999998888888
Q ss_pred HHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHH
Q 044175 96 LVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTT 175 (537)
Q Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 175 (537)
..+........ ..+..+++++.++.|+|.+...+.......... +++ +++..+..+...
T Consensus 295 ~~~~~~~~~~~--------------~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~-~~~------~g~~~~~~~~~~ 353 (406)
T PRK15402 295 LLLAALATVIS--------------SHAYLWLTAGLSLYAFGIGLANAGLYRLTLFSS-DVS------KGTVSAAMGMLS 353 (406)
T ss_pred HHHHHHHHHcc--------------cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhhc-ccc------ccHHHHHHHHHH
Confidence 77766542100 124556677888899999887777666554433 344 788888888888
Q ss_pred HHHHHHHHHHHhhhcccccchHHHHHHHHHHH
Q 044175 176 TLAAVIGVTAIVYVSTEKAWWGGFLISSIVTF 207 (537)
Q Consensus 176 ~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~ 207 (537)
.+|..+|+.+++++.+..++....+..++..+
T Consensus 354 ~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~ 385 (406)
T PRK15402 354 MLIFTVGIELSKHAYLGGGNGLFNLFNLANGL 385 (406)
T ss_pred HHHHHHHHHHHHhcccCCchHHHHHHHHHHHH
Confidence 89999999999998877776654444444333
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-09 Score=113.67 Aligned_cols=176 Identities=14% Similarity=0.058 Sum_probs=118.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHH
Q 044175 16 ACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLA 95 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~ 95 (537)
.++...+..++....++++..+.+.|+++..|++..++++....+.+...++.+++|+++||+ |+++....+.....+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~~ 330 (438)
T TIGR00712 252 LLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTLV 330 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHHH
Confidence 455666666777777888999999999988999999999999999999999999999999995 7554333333222221
Q ss_pred H---HHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHH
Q 044175 96 L---VMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFL 172 (537)
Q Consensus 96 ~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 172 (537)
. ..+.... ..+.....+..++.|.+.............|.+|+++ |+++.++.+
T Consensus 331 ~~~~~~~~~~~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~ 387 (438)
T TIGR00712 331 TIAVIVYWMNP-----------------AGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTG 387 (438)
T ss_pred HHHHHHHHhcC-----------------CCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh------eeeehhhhc
Confidence 1 1111111 0122333333444444432222222345678888777 889999988
Q ss_pred HHHHHH-HHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHh
Q 044175 173 LTTTLA-AVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVI 215 (537)
Q Consensus 173 ~~~~~g-~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~ 215 (537)
...++| .+++|.+.|++.++.||...|.+.....+++.+..+.
T Consensus 388 ~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T TIGR00712 388 LFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 431 (438)
T ss_pred hHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 777776 4689999999999889999988766655555444443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.7e-09 Score=109.54 Aligned_cols=155 Identities=14% Similarity=0.054 Sum_probs=127.9
Q ss_pred chHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHH
Q 044175 15 RACGFIFVLSSLENMGFIANA-ISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEV 93 (537)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~-~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~ 93 (537)
|.++......++....+++.. ...+.|.++.+|.+..+.+.+.....++..++.++.|++.||+ |||+.+..+..+..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~ 288 (365)
T TIGR00900 210 PLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIG 288 (365)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHH
Confidence 345556666667777776666 6777777777999999999999999999999999999999995 99999998877777
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHH
Q 044175 94 LALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLL 173 (537)
Q Consensus 94 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 173 (537)
++..+..... ++...+.+..++.|++.+...+...+++.|..|+++ |++..+..+.
T Consensus 289 ~~~~~~~~~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~ 344 (365)
T TIGR00900 289 LAILVVGLTP------------------PNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL------LGRVFGAQFS 344 (365)
T ss_pred HHHHHHHhhc------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHH
Confidence 7766666542 125667778889999999999999999999999766 8999999999
Q ss_pred HHHHHHHHHHHHHhhhccccc
Q 044175 174 TTTLAAVIGVTAIVYVSTEKA 194 (537)
Q Consensus 174 ~~~~g~~i~~~~~~~l~~~~g 194 (537)
..++|..++|.++|++.+..|
T Consensus 345 ~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 345 LSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999877543
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.1e-09 Score=105.53 Aligned_cols=161 Identities=8% Similarity=-0.076 Sum_probs=121.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--cCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHH
Q 044175 16 ACGFIFVLSSLENMGFIANAISMVLYFKNE--MHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEV 93 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~ 93 (537)
..+...+..++....--++..+++.|+.+. +|+++.+.+...+.+..+..++.+++++++||+ |+||++.++.++..
T Consensus 141 ~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l~~ 219 (310)
T TIGR01272 141 HLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFLAV 219 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHH
Confidence 344444444444445556778899999753 799999999999999999999999999999995 99999998888777
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHH
Q 044175 94 LALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLL 173 (537)
Q Consensus 94 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 173 (537)
++.++..... .. ....+.++.|++.+.+.|+..+...+.++++.. ++++. . .
T Consensus 220 ~~~~l~~~~~-------------------~~-~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~~-----~asai--~-~ 271 (310)
T TIGR01272 220 LLSIGAALTH-------------------GY-VAMWFVLALGLFNSIMFPTIFSLALNALGRHTS-----QGSGI--L-C 271 (310)
T ss_pred HHHHHHHHcC-------------------CH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-----hhHHH--H-H
Confidence 7765444431 11 123355688999999999999999888875431 33333 2 4
Q ss_pred HHHHHHHHHHHHHhhhcccccchHHHHHHHHH
Q 044175 174 TTTLAAVIGVTAIVYVSTEKAWWGGFLISSIV 205 (537)
Q Consensus 174 ~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~ 205 (537)
+..+|+++.|.+.|.+.+..|.+..|++..++
T Consensus 272 ~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~ 303 (310)
T TIGR01272 272 LAIVGGAIVPLLQGSLADCLGIQLAFALPVPC 303 (310)
T ss_pred HHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence 56799999999999999988988888755543
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.5e-09 Score=111.09 Aligned_cols=173 Identities=11% Similarity=0.031 Sum_probs=111.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhH-----H--HHHH
Q 044175 16 ACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFA-----T--CLIF 88 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~-----~--~~~~ 88 (537)
.+|.+.+..++....++....+++.|+.+++|++..+++.+.+.+.++..++.+++|+++||+ |||+ . ..+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~ 331 (476)
T PLN00028 253 RTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIV 331 (476)
T ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHH
Confidence 345555554555555566777889999888999999999999999999999999999999995 8762 2 2222
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHH
Q 044175 89 GTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYF 168 (537)
Q Consensus 89 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 168 (537)
.++..+..++.... ++.....+..++.+++.+...+...++..+..| +. ++...
T Consensus 332 ~~l~~i~~~~~~~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~ 385 (476)
T PLN00028 332 QTLGGVFCIWLGRA-------------------NSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RS------LGVIS 385 (476)
T ss_pred HHHHHHHHHHhccc-------------------chHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hh------chhhh
Confidence 22222222222211 133444445555566555555555555566544 33 77888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHhc
Q 044175 169 NYFLLTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIG 216 (537)
Q Consensus 169 ~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~ 216 (537)
++.....++|+.++|.+.+ .....+|+..|.+.+++.+++.++.++.
T Consensus 386 g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~ 432 (476)
T PLN00028 386 GLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFI 432 (476)
T ss_pred hhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence 8876666777777776654 2234468899988776666665555544
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=6e-09 Score=106.95 Aligned_cols=168 Identities=17% Similarity=0.091 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHH
Q 044175 17 CGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLAL 96 (537)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~ 96 (537)
.+...+..++...+.+....+.++|+.+.+|+++.+.+.+.+...++..++.++.|+++||+ |||+.+..+..+..++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~ 279 (382)
T PRK10091 201 PWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLAL 279 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHH
Confidence 45555555555556666667778888888999999999999999999999999999999995 99999999988888777
Q ss_pred HHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhh-cccCCCCCChhhhhhhhhHHHHHHHHH
Q 044175 97 VMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPAL-GAGQFDEKDPKGAKALASYFNYFLLTT 175 (537)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~ 175 (537)
++..... ++.....+..++.+.|.+...+..... ..+..+++. ++... .....
T Consensus 280 ~~~~~~~------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~--~~~~~ 333 (382)
T PRK10091 280 LMLFFFG------------------GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL------LGAAG--GQIAF 333 (382)
T ss_pred HHHHHHH------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH------HHHHH--HHHHH
Confidence 6554332 123344445555556554444433333 333333222 33332 24567
Q ss_pred HHHHHHHHHHHhhhccc-ccchHHHHHHHHHHHHHHH
Q 044175 176 TLAAVIGVTAIVYVSTE-KAWWGGFLISSIVTFIGFI 211 (537)
Q Consensus 176 ~~g~~i~~~~~~~l~~~-~g~~~~f~i~~~~~~~~~~ 211 (537)
++|..+||.++|++.+. .+|+..+.+.+....+.+.
T Consensus 334 ~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~ 370 (382)
T PRK10091 334 NLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMS 370 (382)
T ss_pred HHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHH
Confidence 89999999999998875 6799988887665544433
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.1e-09 Score=110.21 Aligned_cols=163 Identities=7% Similarity=-0.088 Sum_probs=114.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHH-HHHHHHHHH
Q 044175 16 ACGFIFVLSSLENMGFIANAISMVLYFKN-EMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFAT-CLIFGTLEV 93 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~-~~~~~~~~~ 93 (537)
.++...+..++....++++.+++|.|+++ ..|.+..+++.......++..++.+++|+++||+ |||+. +....++..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~~ 321 (412)
T TIGR02332 243 AIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFAA 321 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHHH
Confidence 45667777788888899999999999976 3577888899999999999999999999999995 97775 333333333
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHH
Q 044175 94 LALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLL 173 (537)
Q Consensus 94 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 173 (537)
++..+.... .+......+..+.++|.....+.......|.+|+++ |++++++.+.
T Consensus 322 ~~~~~~~~~-------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~a~g~~~~ 376 (412)
T TIGR02332 322 AGWLLASAT-------------------DHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA------RAIAIAVINA 376 (412)
T ss_pred HHHHHHHhc-------------------CCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHH------HHHHHHHHHH
Confidence 333222111 111222222223333333333334445566777666 8999999999
Q ss_pred HHHHHHHHHHHHHhhhccccc-chHHHHHHHH
Q 044175 174 TTTLAAVIGVTAIVYVSTEKA-WWGGFLISSI 204 (537)
Q Consensus 174 ~~~~g~~i~~~~~~~l~~~~g-~~~~f~i~~~ 204 (537)
..++|+.++|.+.+.+.+..| |+..|.+.++
T Consensus 377 ~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~ 408 (412)
T TIGR02332 377 TGNIGSALSPFLIGILKDATGSFNSGLWFVAA 408 (412)
T ss_pred hhhhhhhhhhhhcccccccCCCCchhHHHHHH
Confidence 999999999999999988775 9988876554
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=7e-09 Score=106.44 Aligned_cols=166 Identities=9% Similarity=-0.023 Sum_probs=126.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHH
Q 044175 15 RACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVL 94 (537)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i 94 (537)
|.++...+..++....+.+.....+.|++ +.|.+..+.+.+.+...+...+..++.|++.||+ |+|+.+..+.+...+
T Consensus 205 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~ 282 (382)
T PRK11128 205 PTVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVV 282 (382)
T ss_pred hhHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHH
Confidence 34555666666666777777788888985 5899999999999988889999999999999995 999999999888888
Q ss_pred HHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHH-H
Q 044175 95 ALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFL-L 173 (537)
Q Consensus 95 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~ 173 (537)
+.+++.... +.+.+++..++.|++.+...+....+..+. ++++ +++..+... .
T Consensus 283 ~~~~~~~~~-------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~ 336 (382)
T PRK11128 283 RWGLMGSTT-------------------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIRLQALYSAL 336 (382)
T ss_pred HHHHHHhhh-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHHHHHHHHHH
Confidence 776665542 567778888999999998888888877775 3333 456666654 4
Q ss_pred HHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHH
Q 044175 174 TTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIG 209 (537)
Q Consensus 174 ~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~ 209 (537)
...+|..++|.++|++.+.+|+. .|+..+.+.+++
T Consensus 337 ~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~ 371 (382)
T PRK11128 337 AMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPA 371 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHH
Confidence 45678899999999999988874 555544443333
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.3e-09 Score=111.97 Aligned_cols=161 Identities=15% Similarity=0.056 Sum_probs=121.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHH
Q 044175 15 RACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVL 94 (537)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i 94 (537)
|.++.+++..++..++++......+.|.+..++ +..+.+.+.....++..++.++.|+++||+ |||+++.++.++.++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~ 299 (437)
T TIGR00792 222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVL 299 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 355666777777777777665555566655566 556677777888899999999999999995 999999999888888
Q ss_pred HHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChh-hhhhhhhHHHHHHH
Q 044175 95 ALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPK-GAKALASYFNYFLL 173 (537)
Q Consensus 95 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~ 173 (537)
+.+++.+.. ++...+++..++.|++.+...+...++++|..+.++-+ ..+.++..++....
T Consensus 300 ~~~~~~~~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 361 (437)
T TIGR00792 300 GYLIFFFAG------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTF 361 (437)
T ss_pred HHHHHHHcc------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHH
Confidence 877665542 24455666778889999998999999999987643211 11126888898888
Q ss_pred HHHHHHHHHHHHHhhhcccccc
Q 044175 174 TTTLAAVIGVTAIVYVSTEKAW 195 (537)
Q Consensus 174 ~~~~g~~i~~~~~~~l~~~~g~ 195 (537)
...+|..+++.+.|++.+..||
T Consensus 362 ~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 362 VRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999988766555
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.6e-09 Score=106.07 Aligned_cols=175 Identities=15% Similarity=0.092 Sum_probs=124.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHH-HHHHHhhHhHHHhhhccchhHHHHHHHHHHHH
Q 044175 16 ACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMG-STFLLCLVGGFISDTFLSRFATCLIFGTLEVL 94 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i 94 (537)
.++..+...++...+......+.+.|+++ .|+++.+.+.+...... ...++.+++|++.||+ |+||.+..+.++..+
T Consensus 209 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~ 286 (390)
T TIGR02718 209 LAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGS 286 (390)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 34556666677777777777888889865 79999999998887754 5667789999999995 999999988776544
Q ss_pred HHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCC-CChhhhhhhhhHHHHHHH
Q 044175 95 ALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDE-KDPKGAKALASYFNYFLL 173 (537)
Q Consensus 95 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~ 173 (537)
.......... ... ...........++.+++.|...+...+...+..++ +. +++.++..+.
T Consensus 287 ~~~~~~~~~~-~~~------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~ 347 (390)
T TIGR02718 287 LALLWFAQAA-FWL------------APGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ------AGTDVTAVQS 347 (390)
T ss_pred HHHHHHHHHH-ccc------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc------hHHHHHHHHH
Confidence 3332221110 000 01223333444555666677777777776666654 44 7888999888
Q ss_pred HHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHH
Q 044175 174 TTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFI 211 (537)
Q Consensus 174 ~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~ 211 (537)
..++|..++|.++|++.+..|++..|.+.+.+.+++.+
T Consensus 348 ~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 348 TRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 88999999999999999988999888877665554433
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-07 Score=98.77 Aligned_cols=163 Identities=15% Similarity=0.123 Sum_probs=117.0
Q ss_pred HHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhc--cc--hhHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 044175 36 ISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTF--LS--RFATCLIFGTLEVLALVMITVQAYSEKLHPP 111 (537)
Q Consensus 36 ~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~--~G--r~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 111 (537)
.....|+++++|+++++.....+...+. ...-++.|.++|.+ +| ||+-++++.++..++...++..+..
T Consensus 10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lP-w~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~------ 82 (433)
T PF03092_consen 10 LAIYPFLKDDLGLSPAQLQRLSSLASLP-WSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS------ 82 (433)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhCc-hHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc------
Confidence 3445688999999999988766554443 45678889999995 34 4455556666665555555544210
Q ss_pred CCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 044175 112 DCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVST 191 (537)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~ 191 (537)
..+.....+..++..+|........-+.+.|...+++.+ ++...++.+....+|.+++..++|.+.+
T Consensus 83 ---------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~----~g~lqS~~~~~~~~G~lv~~~l~G~l~~ 149 (433)
T PF03092_consen 83 ---------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES----RGDLQSFVWGVRSVGSLVGSLLSGPLLD 149 (433)
T ss_pred ---------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 124445556667788899999999999999988755432 6777888888899999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHHHHHhccc
Q 044175 192 EKAWWGGFLISSIVTFIGFIALVIGKP 218 (537)
Q Consensus 192 ~~g~~~~f~i~~~~~~~~~~~~~~~~~ 218 (537)
..+++..|.+.+.+..+..+..++..+
T Consensus 150 ~~~~~~~f~i~~~~~~l~~~~~~~~~~ 176 (433)
T PF03092_consen 150 SFGPQGVFLISAALPLLMLIVALFLLE 176 (433)
T ss_pred cCCCeEEehHHHHHHHHHHHHHHHhhh
Confidence 889999998887766655544444443
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.6e-09 Score=106.73 Aligned_cols=169 Identities=12% Similarity=0.023 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---CCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHH
Q 044175 17 CGFIFVLSSLENMGFIANAISMVLYFKNEM---HFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEV 93 (537)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~ 93 (537)
++..+...++....+.......+.|+.+.+ +.+....+.+.+...+...++.+..|++.||+ |||+.+.++.++..
T Consensus 217 ~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l~~ 295 (396)
T TIGR00882 217 FWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTIMS 295 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHH
Confidence 444444444444555555566778877655 55666778888888888999999999999995 99999999988888
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHH-HH
Q 044175 94 LALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNY-FL 172 (537)
Q Consensus 94 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~ 172 (537)
++..+.... ++...+++.+++.|++..........+..+..+++. +++..+. ..
T Consensus 296 l~~~~~~~~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~at~~~~~~~ 350 (396)
T TIGR00882 296 VRIIGSSFA-------------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL------SATIYLIGFQ 350 (396)
T ss_pred HHHHHHHhc-------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce------EEEeehHHHH
Confidence 877665554 255667778888888876555555556666666554 5555544 45
Q ss_pred HHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHH
Q 044175 173 LTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFI 211 (537)
Q Consensus 173 ~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~ 211 (537)
....+|..++|.++|++.+..||+..|.+.+++.++..+
T Consensus 351 ~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~ 389 (396)
T TIGR00882 351 FAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTL 389 (396)
T ss_pred HHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 678899999999999999988999999887766544433
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-08 Score=107.45 Aligned_cols=157 Identities=8% Similarity=-0.082 Sum_probs=109.9
Q ss_pred HHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCC
Q 044175 37 SMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKS 116 (537)
Q Consensus 37 ~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 116 (537)
+.+.+ .+++|.+..+..+......+...++.+++|+++||+ |||+++..+.++.+++.+++......+
T Consensus 293 ~~p~i-~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~~~---------- 360 (479)
T PRK10077 293 YAPEI-FKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQ---------- 360 (479)
T ss_pred HHHHH-HHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHhcC----------
Confidence 33433 456888877777777778888999999999999995 999999999999888887776542100
Q ss_pred CccCCchhHHHHHHHHHHHHhccc-ccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHh------hh
Q 044175 117 SCVKGGIAAYFYASLCLYALGSGG-VRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIV------YV 189 (537)
Q Consensus 117 ~~~~~~~~~~~~~~~~l~g~g~g~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~------~l 189 (537)
........+.++.+.+.+. ..|+...+++|.+|+++ |++++++.+...++|..+++.+.+ ++
T Consensus 361 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~ 429 (479)
T PRK10077 361 -----APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWIANYFVSWTFPMMDKNSWL 429 (479)
T ss_pred -----cccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHHHHHHHHHHHHHHHhHHHHhccch
Confidence 0112233344444444443 34677899999999777 899999988888888877755544 44
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHhc
Q 044175 190 STEKAWWGGFLISSIVTFIGFIALVIG 216 (537)
Q Consensus 190 ~~~~g~~~~f~i~~~~~~~~~~~~~~~ 216 (537)
.+..+|+..|++.++..+++.+..++.
T Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (479)
T PRK10077 430 VAHFHNGFSYWIYGCMGVLAALFMWKF 456 (479)
T ss_pred hhhccCccHHHHHHHHHHHHHHHHHhc
Confidence 467788888887766555555444433
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1e-08 Score=107.07 Aligned_cols=166 Identities=13% Similarity=0.063 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-hhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHH
Q 044175 17 CGFIFVLSSLENMGFIANAISMVLYF-KNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLA 95 (537)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~yl-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~ 95 (537)
.+...+..++.....++...+.+.|+ ++.+|+++.+.+.....+.++..++.+++|++.||+ ||||++..+.++..++
T Consensus 260 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~~ 338 (438)
T PRK10133 260 WRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMAL 338 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHH
Confidence 34444555666677777778888885 567899999999999999999999999999999995 9999999987776666
Q ss_pred HHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHH
Q 044175 96 LVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTT 175 (537)
Q Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 175 (537)
..+..... +. ..+....+.|++.+.+.|+..+...|.++++. +.+.++.. ..
T Consensus 339 ~~~~~~~~-------------------~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~-------~~as~l~~-~~ 390 (438)
T PRK10133 339 CLISAFAG-------------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDT-------KYGSSFIV-MT 390 (438)
T ss_pred HHHHHHcC-------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhh-------ccchhHHh-HH
Confidence 55444331 21 22455678999999999999999999887543 22222222 23
Q ss_pred HHHHHHHHHHHhhhccccc-chHHHHHHHHHHHHHHH
Q 044175 176 TLAAVIGVTAIVYVSTEKA-WWGGFLISSIVTFIGFI 211 (537)
Q Consensus 176 ~~g~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~ 211 (537)
.+|+.++|.+.|.+.+..| -+..|++..+..+...+
T Consensus 391 ~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~ 427 (438)
T PRK10133 391 IIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_pred hccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 3678888889999988887 78888876665444433
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.4e-09 Score=111.41 Aligned_cols=155 Identities=14% Similarity=0.091 Sum_probs=126.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHH
Q 044175 16 ACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLA 95 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~ 95 (537)
.++...+..++..+.+++...+++.|+++.+|+++.+++.......++..++.++.|++.||+ |||+.+.++..+..++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~~ 334 (485)
T TIGR00711 256 NFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAVG 334 (485)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHHH
Confidence 445556677777888888889999999999999999999999999999999999999999995 9999999998888888
Q ss_pred HHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHH
Q 044175 96 LVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTT 175 (537)
Q Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 175 (537)
..++..... + ..+...+....++.|+|.|...+.......+..|+++ ++++.+..+...
T Consensus 335 ~~~~~~~~~-~--------------~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~ 393 (485)
T TIGR00711 335 FYWRAFTFT-P--------------DTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK------IARGSSLSNFTR 393 (485)
T ss_pred HHHHhccCC-C--------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HhHHHHHHHHHH
Confidence 777663210 0 1244556666788999999887777777777787666 899999999899
Q ss_pred HHHHHHHHHHHhhhccc
Q 044175 176 TLAAVIGVTAIVYVSTE 192 (537)
Q Consensus 176 ~~g~~i~~~~~~~l~~~ 192 (537)
++|+.+|+.+.+.+.++
T Consensus 394 ~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 394 QLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999988877654
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.3e-09 Score=106.31 Aligned_cols=147 Identities=15% Similarity=0.075 Sum_probs=113.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHH
Q 044175 16 ACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLA 95 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~ 95 (537)
..+.+.+..++....++....+.+ ++.+++|.+..+.+...+...++..++.++.|+++||+ |||+.+....+. .+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~-~~~ 327 (398)
T TIGR00895 251 ITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLLG-AVF 327 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHH-HHH
Confidence 344455556667777777777777 66678899999999999999999999999999999995 998554444333 333
Q ss_pred HHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHH
Q 044175 96 LVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTT 175 (537)
Q Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 175 (537)
..+..... .+....++..++.|++.+...+...++++|.+|+++ |++.+++.....
T Consensus 328 ~~~~~~~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~ 383 (398)
T TIGR00895 328 AVLVGSTL------------------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI------RATGVGWAIGIG 383 (398)
T ss_pred HHHHHHHh------------------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH------HHHHHHHHHHHH
Confidence 33322211 144556677788999999999999999999999776 899999999889
Q ss_pred HHHHHHHHHHHhhh
Q 044175 176 TLAAVIGVTAIVYV 189 (537)
Q Consensus 176 ~~g~~i~~~~~~~l 189 (537)
.+|..++|.++|++
T Consensus 384 ~~g~~~g~~~~G~l 397 (398)
T TIGR00895 384 RLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHhHHhc
Confidence 99999999999875
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.7e-08 Score=102.79 Aligned_cols=173 Identities=15% Similarity=0.177 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHH-HHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHH
Q 044175 18 GFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLM-GSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLAL 96 (537)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~ 96 (537)
+.+++..++...+........+.|+.+++|+++.+.+++..... .+..++.+++|++.||+ |||+.+.++.+...+..
T Consensus 212 ~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~~ 290 (402)
T PRK11902 212 WALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVSN 290 (402)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHH
Confidence 33334334433333323344556777789999999999886654 56889999999999995 99999888777666655
Q ss_pred HHHHHHhhccccCCCCCCCCCccCCchhHHHHHHH----HHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHH
Q 044175 97 VMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASL----CLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFL 172 (537)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 172 (537)
+........ .++.+.+.+.. +..|++.+...+....++.+.+|.++ . +...
T Consensus 291 l~~~~~~~~---------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~----~~~~ 345 (402)
T PRK11902 291 LGYWVLAVT---------------PKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ------Y----ALLS 345 (402)
T ss_pred HHHHHHHhc---------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH------H----HHHH
Confidence 433321110 01333444443 34556666667777777877776433 3 3333
Q ss_pred HHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHhc
Q 044175 173 LTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIG 216 (537)
Q Consensus 173 ~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~ 216 (537)
...++|..+++.++|++.+..||+..|.+.+.+.++++++.+..
T Consensus 346 ~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~~ 389 (402)
T PRK11902 346 ALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWLM 389 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 34467776666789999999999999998887776665554433
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.2e-09 Score=109.34 Aligned_cols=153 Identities=8% Similarity=-0.016 Sum_probs=126.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHH
Q 044175 16 ACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLA 95 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~ 95 (537)
.+....+..++..+++++...+.+.|+++.+|+++.+++.......++..++.++.|++.||+ |||+.+..+.++..++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~~ 338 (495)
T PRK14995 260 IILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSALS 338 (495)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHH
Confidence 445566667777778888888999999999999999999999999999999999999999995 9999999898888888
Q ss_pred HHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHH
Q 044175 96 LVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTT 175 (537)
Q Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 175 (537)
.+++..... ..+.....+..++.|+|.|...+.....+.+..|+++ ++.+.+..+...
T Consensus 339 ~~~l~~~~~----------------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~ 396 (495)
T PRK14995 339 FYGLAMTDF----------------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK------AAAAGAIETMAY 396 (495)
T ss_pred HHHHHHhcC----------------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cchHHHHHHHHH
Confidence 776654321 1233445667788999999988888888888888776 788888888899
Q ss_pred HHHHHHHHHHHhhhcc
Q 044175 176 TLAAVIGVTAIVYVST 191 (537)
Q Consensus 176 ~~g~~i~~~~~~~l~~ 191 (537)
++|..+|+.+.+.+.+
T Consensus 397 ~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 397 ELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999887643
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.7e-08 Score=102.95 Aligned_cols=186 Identities=14% Similarity=0.028 Sum_probs=125.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHH
Q 044175 15 RACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVL 94 (537)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i 94 (537)
+..|.+.+..++..-+|.+...++|.|+++.++ ............+...+..|++|+|+||+ |++|++.++.+...+
T Consensus 252 ~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i 328 (462)
T PRK15034 252 LHLWLLSLLYLATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAI 328 (462)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHH
Confidence 357888888888777777787889999887653 33333334456788999999999999995 999999999887777
Q ss_pred HHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCC---------------hh
Q 044175 95 ALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKD---------------PK 159 (537)
Q Consensus 95 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~---------------~~ 159 (537)
+........ |.. ...+...+.+..+...++.|.-...+..++.+.+|+++ .+
T Consensus 329 ~~~~~~l~l--p~~-----------~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~ 395 (462)
T PRK15034 329 FSALLFLTL--PGT-----------GSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQRE 395 (462)
T ss_pred HHHHHHHHh--ccc-----------cccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhH
Confidence 765433332 100 01255666666666667777777777777777776410 01
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcccc-cchHHHHHHHHHHHHHHHHHHhc
Q 044175 160 GAKALASYFNYFLLTTTLAAVIGVTAIVYVSTEK-AWWGGFLISSIVTFIGFIALVIG 216 (537)
Q Consensus 160 ~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~-g~~~~f~i~~~~~~~~~~~~~~~ 216 (537)
.+++.+...++......+|+.+-|.+-+...+.. ++...|+...+..++++++-+..
T Consensus 396 ~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~ 453 (462)
T PRK15034 396 AVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLV 453 (462)
T ss_pred HHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 1223566777777777888888887766655443 47777877777666666554443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.9e-08 Score=104.72 Aligned_cols=176 Identities=11% Similarity=-0.031 Sum_probs=119.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHH--------H
Q 044175 15 RACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATC--------L 86 (537)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~--------~ 86 (537)
+.++.+.+..++...+++....++|.|+++.+|.+..+.++..+...++..++.+++|+++||+ ++|+.. .
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~~~ 339 (465)
T TIGR00894 261 LPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARKIF 339 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHHH
Confidence 4577888888899999999999999999999999999999999999999999999999999995 655321 1
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhh
Q 044175 87 IFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALAS 166 (537)
Q Consensus 87 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 166 (537)
.+......+..+...... ..+....++...+.+.+.+...+.......|..|. . ++.
T Consensus 340 ~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~------~g~ 396 (465)
T TIGR00894 340 NGIGGLGPGIFAYALPYL----------------SAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-F------LGF 396 (465)
T ss_pred HHHHHHHHHHHHHHHHHc----------------CCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-H------HHH
Confidence 111111111111111110 01233334444455555555555544444555542 3 788
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccc---cchHHHHHHHHHHHHHHHHHH
Q 044175 167 YFNYFLLTTTLAAVIGVTAIVYVSTEK---AWWGGFLISSIVTFIGFIALV 214 (537)
Q Consensus 167 ~~~~~~~~~~~g~~i~~~~~~~l~~~~---g~~~~f~i~~~~~~~~~~~~~ 214 (537)
..++.....++|+.++|.+.+++.+.. +|+..|.+.++..+++.+...
T Consensus 397 ~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~ 447 (465)
T TIGR00894 397 IKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYL 447 (465)
T ss_pred HHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHee
Confidence 999999999999999999999887643 378888877766665554443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.3e-09 Score=105.47 Aligned_cols=162 Identities=14% Similarity=0.108 Sum_probs=117.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHH--HH
Q 044175 15 RACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGT--LE 92 (537)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~--~~ 92 (537)
+.++.+.+..++.....++...+.+.|+++++|++..+.+.+...+.++..++.++.|+++||..+||+....... ..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~ 295 (379)
T TIGR00881 216 KVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALI 295 (379)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 3456666777777777788888999999999999999999999999999999999999999984233333222111 11
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHH
Q 044175 93 VLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFL 172 (537)
Q Consensus 93 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 172 (537)
.++........ ..+.....+..++.|...+...+....+..|.+|+++ |+++.++..
T Consensus 296 ~~~~~~~~~~~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~ 352 (379)
T TIGR00881 296 IVSLLVYWLNP-----------------AANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA------AGTAAGFVG 352 (379)
T ss_pred HHHHHHHhcCc-----------------chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch------hHHHHHHHH
Confidence 11211111110 0133444555566666555556666778899999877 899999999
Q ss_pred HHHHHHHHHHHHHHhhhcccccchHHH
Q 044175 173 LTTTLAAVIGVTAIVYVSTEKAWWGGF 199 (537)
Q Consensus 173 ~~~~~g~~i~~~~~~~l~~~~g~~~~f 199 (537)
...++|..++|.+.|++.+.+||+..|
T Consensus 353 ~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 353 FFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred HhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 999999999999999999999998654
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.5e-08 Score=100.20 Aligned_cols=162 Identities=12% Similarity=0.048 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHH
Q 044175 17 CGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLAL 96 (537)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~ 96 (537)
.+...+...+....++......+.|+++++|.++.+.+.+.....++..++.++.|+++||+ |||+.+..+..+..++.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~~ 286 (385)
T TIGR00710 208 FWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVSA 286 (385)
T ss_pred hHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence 44444445555666677777788888889999999999999999999999999999999995 99999999988888777
Q ss_pred HHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHH
Q 044175 97 VMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTT 176 (537)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 176 (537)
+++......+ ......+.+..++.|++.+...+.......|..| ++ +++..+.......
T Consensus 287 ~~~~~~~~~~--------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~~~~ 345 (385)
T TIGR00710 287 VLLEITAILG--------------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HV------AGTASALFGTLRL 345 (385)
T ss_pred HHHHHHHHhc--------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cc------chHHHHHHHHHHH
Confidence 6665542100 0133445555677889999888888888888776 34 6777777665554
Q ss_pred -HHHHHHHHHHhhhcccccchHHHHH
Q 044175 177 -LAAVIGVTAIVYVSTEKAWWGGFLI 201 (537)
Q Consensus 177 -~g~~i~~~~~~~l~~~~g~~~~f~i 201 (537)
.|+..+|.++ .+.+..+|...+..
T Consensus 346 ~~g~i~~~~~~-~~~~~~~~~~~~~~ 370 (385)
T TIGR00710 346 VLGAIVGYLVS-LIHGNTAWPMSLSC 370 (385)
T ss_pred HHHHHHHHHHH-hccccChHHHHHHH
Confidence 4555555544 55554455544443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.3e-07 Score=92.18 Aligned_cols=127 Identities=13% Similarity=0.017 Sum_probs=83.5
Q ss_pred HHHHHHHHhhhhcCC---chh----hHHHHHHHHHHHHHHHhhHhHHHhhhccchhHH-HHHHHHHHHHHHHHHHHHhhc
Q 044175 34 NAISMVLYFKNEMHF---NLA----GASNTLTNLMGSTFLLCLVGGFISDTFLSRFAT-CLIFGTLEVLALVMITVQAYS 105 (537)
Q Consensus 34 ~~~~~~~yl~~~l~~---~~~----~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~-~~~~~~~~~i~~~l~~~~~~~ 105 (537)
++.++++|+++..+- ++. ..+...++..+...+..|+-|-++|.. |+||- +-...++..+.++.+..++.
T Consensus 34 tt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f~~i~i~~~~~L~~i~~- 111 (438)
T COG2270 34 TTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFFTAIGIISTFLLWFIPP- 111 (438)
T ss_pred eeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHHHHHHHHHHHHHHHhCC-
Confidence 346788888876543 333 346667778888889999999999996 85554 44555556666666776641
Q ss_pred cccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHH
Q 044175 106 EKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGV 183 (537)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~ 183 (537)
.......++..++..++.........++..|..++++ .++.-+.-|-...+|+.+.-
T Consensus 112 ---------------~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~------~~riS~lg~~~gylgs~i~l 168 (438)
T COG2270 112 ---------------GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDN------MGRISGLGWALGYLGSVILL 168 (438)
T ss_pred ---------------CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccc------cCcccccccccccccchHHH
Confidence 1244555555677888888888888999999988766 33333333334455555443
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.1e-08 Score=101.42 Aligned_cols=173 Identities=13% Similarity=0.129 Sum_probs=139.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHH
Q 044175 16 ACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLA 95 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~ 95 (537)
.+...++..++-+=+-.++......|...++|++..+...+.....+.+.+++++.|+|+||+ |-|+++..+.++..+.
T Consensus 253 ~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~~~ 331 (438)
T COG2270 253 NLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILSIA 331 (438)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHHHH
Confidence 556666667777777777888888999999999999999999999999999999999999995 9999999999988887
Q ss_pred HHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHH
Q 044175 96 LVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTT 175 (537)
Q Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 175 (537)
.+...+.. ....+.+.-++.|...|+.++..-++.++..|+++ -++.|+++.+..
T Consensus 332 ~~~~~~~~-------------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~fFglyaltg 386 (438)
T COG2270 332 ALYLIFLE-------------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGRFFGLYALTG 386 (438)
T ss_pred HHHHHHcc-------------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccceeehhhhhh
Confidence 77655542 22344555578999999999999999999999888 688999999999
Q ss_pred HHHHHHHHHHHhhhccccc-chHHHHHHHHHHHHHHHHHH
Q 044175 176 TLAAVIGVTAIVYVSTEKA-WWGGFLISSIVTFIGFIALV 214 (537)
Q Consensus 176 ~~g~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~ 214 (537)
..+..+||...+.+.+..| -|..+..-.++..+.+++++
T Consensus 387 ra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~ 426 (438)
T COG2270 387 RAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLL 426 (438)
T ss_pred hHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEE
Confidence 9999999999988877654 56665544444444444433
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.8e-08 Score=100.65 Aligned_cols=164 Identities=11% Similarity=0.016 Sum_probs=117.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHH
Q 044175 16 ACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLA 95 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~ 95 (537)
.++...+..++...++++...+.++++.+++|++..+.+.+...+.++..++.++.|++.||. +|+ .+..+..+..+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~-~l~~~~~~~~~~ 294 (394)
T PRK10213 217 GVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKL-ALAGAPLVLAVS 294 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chh-HHHHHHHHHHHH
Confidence 345555555566666666667765555567899999999999999999999999999999994 554 444443443333
Q ss_pred -HHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHH
Q 044175 96 -LVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLT 174 (537)
Q Consensus 96 -~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 174 (537)
.++.... .+.+.+.+..++.|++.+...+..++++.+..|++ +++..+.....
T Consensus 295 ~~~l~~~~-------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 348 (394)
T PRK10213 295 ALVLTLWG-------------------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLADQ-------AEKAGSIQVAV 348 (394)
T ss_pred HHHHHHHh-------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCccc-------HHHHHHHHHHH
Confidence 3333332 14556667788899999999998888888887743 23445555567
Q ss_pred HHHHHHHHHHHHhhhcccccchHHHHHHHHHHH
Q 044175 175 TTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTF 207 (537)
Q Consensus 175 ~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~ 207 (537)
.++|..+||.++|++.+..|++..+...+....
T Consensus 349 ~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~ 381 (394)
T PRK10213 349 IQLANTCGAAIGGYALDNIGLTSPLMLSGTLML 381 (394)
T ss_pred HHHHHHHHHHHHHHHHhccChhhHHHHHHHHHH
Confidence 789999999999999998898888877665443
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.5e-11 Score=124.16 Aligned_cols=194 Identities=14% Similarity=0.155 Sum_probs=3.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Q 044175 22 VLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITV 101 (537)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~ 101 (537)
+..+.. ...++.......-+.++|+++..++|++.+.+-++..+..++..++++|. -|-|-+-+|.++.++|.+++++
T Consensus 10 ~~~~~q-~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~~l 87 (539)
T PF03137_consen 10 LLGLFQ-MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLFAL 87 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHHhc
Confidence 333344 66666667777788899999999999999999999999999999999994 8888899999999999998875
Q ss_pred HhhccccCCCCC--------C--CCCc------------------cC---CchhHHHHHHHHHHHHhcccccccchhhcc
Q 044175 102 QAYSEKLHPPDC--------G--KSSC------------------VK---GGIAAYFYASLCLYALGSGGVRGALPALGA 150 (537)
Q Consensus 102 ~~~~~~~~~~~~--------~--~~~~------------------~~---~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~ 150 (537)
-.....-+..+. + .+.| ++ ..-...++++.++.|+|....++...+|+=
T Consensus 88 Phf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiD 167 (539)
T PF03137_consen 88 PHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYID 167 (539)
T ss_dssp ----------------------------------------------------------------SSS-------------
T ss_pred cHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeec
Confidence 211111000000 0 0111 01 123478888999999999999999999999
Q ss_pred cCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccc---------------------c-cchHHHHHHHHHHHH
Q 044175 151 GQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVSTE---------------------K-AWWGGFLISSIVTFI 208 (537)
Q Consensus 151 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~---------------------~-g~~~~f~i~~~~~~~ 208 (537)
|..++++ -+..++..+.+..+|.++|.++++.+... . .||..|++.+...++
T Consensus 168 Dnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l 241 (539)
T PF03137_consen 168 DNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFL 241 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 9988777 56778888888899999999888765311 1 388899888877766
Q ss_pred HHHHHHhcccccccc
Q 044175 209 GFIALVIGKPFYRNQ 223 (537)
Q Consensus 209 ~~~~~~~~~~~~~~~ 223 (537)
..+.++.++++.+..
T Consensus 242 ~aipl~~FPk~lp~~ 256 (539)
T PF03137_consen 242 SAIPLFFFPKKLPGT 256 (539)
T ss_dssp ---------------
T ss_pred HHHHHHcCCccCCCc
Confidence 666666665555443
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.1e-08 Score=106.11 Aligned_cols=171 Identities=13% Similarity=0.034 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHH
Q 044175 17 CGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLAL 96 (537)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~ 96 (537)
+..++...++..+....+...+|.+.++.+|.+....|.+.+++.++..++.++.+++.+|+ ++++.+..+.++++++.
T Consensus 220 l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~~~ 298 (524)
T PF05977_consen 220 LRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFALAL 298 (524)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHHHH
Confidence 33444445555555556667788888999999999999999999999999999999999995 99999999998888888
Q ss_pred HHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHH
Q 044175 97 VMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTT 176 (537)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 176 (537)
+.++++. +.+..++..++.|++.........+.+.+..|++. |+|.++.+.....
T Consensus 299 ~~lal~~-------------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~------~GRv~si~~~~~~ 353 (524)
T PF05977_consen 299 LLLALSP-------------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV------RGRVFSIYQMVFF 353 (524)
T ss_pred HHHhcch-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HhHHHHHHHHHHH
Confidence 8877764 56677778888999988888888888888899887 9999999998889
Q ss_pred HHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHH
Q 044175 177 LAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIAL 213 (537)
Q Consensus 177 ~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~ 213 (537)
.+..+|.++.|.+.+..|-+..+.++++..++..++.
T Consensus 354 g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~ 390 (524)
T PF05977_consen 354 GGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA 390 (524)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888887776555444443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.7e-08 Score=107.46 Aligned_cols=167 Identities=12% Similarity=0.096 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHH------------HHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHH
Q 044175 23 LSSLENMGFIANAISMVLYFKNEMHFNLAGASN------------TLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGT 90 (537)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~------------~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~ 90 (537)
..++..+.+|++..+.+.+++ +.|++..+.+. ......++..++.+++++++||+ |||+++.++..
T Consensus 296 ~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l~~~~~ 373 (502)
T TIGR00887 296 SWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQLMGFF 373 (502)
T ss_pred HHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHHHH
Confidence 334456678888888888875 57876543221 12223445566788899999995 99999999888
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHH
Q 044175 91 LEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNY 170 (537)
Q Consensus 91 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 170 (537)
+..++..++...... ......+....+...++.....+....+.+|.+|.+. |+++.++
T Consensus 374 ~~~~~~~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~------R~~~~g~ 432 (502)
T TIGR00887 374 ILTVLFFVLGFAYNH---------------LSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRY------RSTAHGI 432 (502)
T ss_pred HHHHHHHHHHHHHHh---------------cchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhH------HHHHHHH
Confidence 777776655543210 0011111111112222222334566677899999888 9999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccc----------ccchHHHHHHHHHHHHHHHH
Q 044175 171 FLLTTTLAAVIGVTAIVYVSTE----------KAWWGGFLISSIVTFIGFIA 212 (537)
Q Consensus 171 ~~~~~~~g~~i~~~~~~~l~~~----------~g~~~~f~i~~~~~~~~~~~ 212 (537)
.+....+|+.++|.+.+++.+. .++...|++.++..+++.+.
T Consensus 433 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~ 484 (502)
T TIGR00887 433 SAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF 484 (502)
T ss_pred HHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH
Confidence 9999999999999999988763 33445666555554444443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.6e-08 Score=102.53 Aligned_cols=152 Identities=12% Similarity=0.009 Sum_probs=116.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccc-hhHHHHHHHHHHHH
Q 044175 16 ACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLS-RFATCLIFGTLEVL 94 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G-r~~~~~~~~~~~~i 94 (537)
..+.+.+...+....+++...+++.|+++ .|++..+.+.+.+...++..++.++.|+++|| +| ||+.+..+.++..+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr-~~~~~~~~~~~~~~~~~ 275 (355)
T TIGR00896 198 LAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARR-VKDQRGIVAVLAVLQLV 275 (355)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhh-hccchHHHHHHHHHHHH
Confidence 45556666667778888888999999975 79999999999999999999999999999999 55 66677777777777
Q ss_pred HHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHH
Q 044175 95 ALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLT 174 (537)
Q Consensus 95 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 174 (537)
+.+.+.... .+... ...++.|++.|...|...+.+.+..++++ .++...++.+..
T Consensus 276 ~~~~~~~~~------------------~~~~~--~~~~l~g~~~g~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~ 330 (355)
T TIGR00896 276 GLCGLLFAP------------------MHGLW--AWALVLGLGQGGAFPLALTLIGLRSRQAA-----QAAALSAMAQSI 330 (355)
T ss_pred HHHHHHHhh------------------hhHHH--HHHHHHHHhhhhHhHHHHHHHHHhccCHH-----HHHHHHHHHHHH
Confidence 776665542 11111 23467899999988887777766554322 157777777777
Q ss_pred HHHHHHHHHHHHhhhccccc
Q 044175 175 TTLAAVIGVTAIVYVSTEKA 194 (537)
Q Consensus 175 ~~~g~~i~~~~~~~l~~~~g 194 (537)
.++|..++|.+.|++.++.|
T Consensus 331 ~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 331 GYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 88899999999999988765
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.9e-08 Score=103.69 Aligned_cols=172 Identities=15% Similarity=-0.004 Sum_probs=126.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHH
Q 044175 16 ACGFIFVLSSLENMGFIANAISMVLYFKN--EMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEV 93 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~ 93 (537)
.++...+..++..+.+.......+.|+.. +.+.+....+.+............++.|++.||+ |||+.+..+.++..
T Consensus 207 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~~ 285 (395)
T PRK10054 207 ALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCFV 285 (395)
T ss_pred eehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHHH
Confidence 44555555666666655555566666643 4456666777788777777777788999999995 99999999988888
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHH
Q 044175 94 LALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLL 173 (537)
Q Consensus 94 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 173 (537)
++........ ++...+.++.++.++|.+...|...+++.+..|++. +++.++...
T Consensus 286 ~~~~~~~~~~------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~------~~~~~~~~~- 340 (395)
T PRK10054 286 IGLVGFIFSG------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM------KASYFSAQS- 340 (395)
T ss_pred HHHHHHHHcc------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc------ceehHhHHH-
Confidence 8876665432 244556677889999998888888889999988776 677776543
Q ss_pred HHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHH
Q 044175 174 TTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIAL 213 (537)
Q Consensus 174 ~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~ 213 (537)
...+|..+||.++|++.++.|....|++.+....++.++.
T Consensus 341 ~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 380 (395)
T PRK10054 341 LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLM 380 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHH
Confidence 5568999999999999999998888876555444443333
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=3e-08 Score=104.04 Aligned_cols=162 Identities=12% Similarity=0.033 Sum_probs=120.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHH
Q 044175 16 ACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLA 95 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~ 95 (537)
.+....+..++...+++......+.|+++.+|.+....+.......++..++.++.++++||+ |+|+++.++.++..++
T Consensus 229 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i~ 307 (448)
T PRK09848 229 PLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTCG 307 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 455566666777777777766777788888888766555555555667788999999999995 9999999999988888
Q ss_pred HHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhh-hhhhhhHHHHHHHH
Q 044175 96 LVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKG-AKALASYFNYFLLT 174 (537)
Q Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~ 174 (537)
.+++.+.. ..+.+.+++..++.++|.+...+...++.+|..|.++-+. .+..+..++.+..+
T Consensus 308 ~~~~~~~~-----------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~ 370 (448)
T PRK09848 308 YLLFFWVS-----------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFT 370 (448)
T ss_pred HHHHHHcC-----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHH
Confidence 77766542 1245566677888999999999999999999887543211 11247777888888
Q ss_pred HHHHHHHHHHHHhhhcccccc
Q 044175 175 TTLAAVIGVTAIVYVSTEKAW 195 (537)
Q Consensus 175 ~~~g~~i~~~~~~~l~~~~g~ 195 (537)
..+|.++++.+.+.+.+..||
T Consensus 371 ~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 371 RKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHHHHHcCC
Confidence 889999999888876544443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.9e-08 Score=102.48 Aligned_cols=154 Identities=14% Similarity=0.083 Sum_probs=110.8
Q ss_pred HHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 044175 33 ANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPD 112 (537)
Q Consensus 33 ~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 112 (537)
....++|.|+++..+ ++.+.+++.+........+..+.+++.||.++.++.+..+.++..++..++....
T Consensus 226 ~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~--------- 295 (400)
T PRK11646 226 QVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS--------- 295 (400)
T ss_pred HHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh---------
Confidence 344567788876655 6778888877766665555545555555434777777888877787777666553
Q ss_pred CCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 044175 113 CGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVSTE 192 (537)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~ 192 (537)
+...+.+..++.+++.+...|...+++.|..|+++ |++.++......++|..+||.++|++.+.
T Consensus 296 ----------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ig~~l~G~l~~~ 359 (400)
T PRK11646 296 ----------NLQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSRLGLALGGAIGYIGGGWLFDL 359 (400)
T ss_pred ----------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence 44556666778888888888999999999999887 89999999889999999999999999776
Q ss_pred c---c-chHHHHHHHHHHHHHHHH
Q 044175 193 K---A-WWGGFLISSIVTFIGFIA 212 (537)
Q Consensus 193 ~---g-~~~~f~i~~~~~~~~~~~ 212 (537)
. + ....|.+..+..++..+.
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 360 GKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred HhhcCCcchHHHHHHHHHHHHHHH
Confidence 3 2 345555544444444433
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.9e-08 Score=115.55 Aligned_cols=162 Identities=13% Similarity=0.019 Sum_probs=127.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchh-hHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHH
Q 044175 16 ACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLA-GASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVL 94 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i 94 (537)
.++..++..++..+..+....+++.|+.+.+|++.. +.+++.+...++..++.++.|+++||+ ++++++.++.++.++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~ 311 (1146)
T PRK08633 233 VLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLAL 311 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHHH
Confidence 344444555555556666778889999999999999 999999999999999999999999995 999999988888877
Q ss_pred HHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHH
Q 044175 95 ALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLT 174 (537)
Q Consensus 95 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 174 (537)
+.+++.... +...+++..++.|++.++..+...+++.+..|++. |+++++..+..
T Consensus 312 ~~~~~~~~~-------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------rg~~~~~~~~~ 366 (1146)
T PRK08633 312 SLFLLPTAP-------------------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------LGKVLAANNFL 366 (1146)
T ss_pred HHHHHHHhh-------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------hhhhhHHHHHH
Confidence 777666553 45666777888999999998999999999999887 89999999888
Q ss_pred HHHHHHHHHHHHhhhcc-cccchHHHHHHH
Q 044175 175 TTLAAVIGVTAIVYVST-EKAWWGGFLISS 203 (537)
Q Consensus 175 ~~~g~~i~~~~~~~l~~-~~g~~~~f~i~~ 203 (537)
.++|..+++.+++.+.. .+++...|.+.+
T Consensus 367 ~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~ 396 (1146)
T PRK08633 367 QNVGMLLFLALTTLFSGLGLSPAGLFYLIA 396 (1146)
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 88998888877776543 234444554433
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.8e-08 Score=99.86 Aligned_cols=145 Identities=17% Similarity=0.145 Sum_probs=111.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHH-HHHHHHhhHhHHHhhhccchhHHHHHHHHHHHH
Q 044175 16 ACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLM-GSTFLLCLVGGFISDTFLSRFATCLIFGTLEVL 94 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i 94 (537)
.++.+.+..++..++++....+.+.|+++ +|++..+.+.+..... +...++.+++|+++||+ ||||.+..+.++..+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~ 287 (356)
T TIGR00901 210 QALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQAL 287 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHH
Confidence 36666667777788889999999999976 9999999998887665 57789999999999995 999999999888777
Q ss_pred HHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHH
Q 044175 95 ALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLT 174 (537)
Q Consensus 95 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 174 (537)
+..+.....+.. +. ++ -+..+...+..+.++.+++.+...+...++..|.+|+++ |++.+++.+..
T Consensus 288 ~~~~~~~~~~~~--~~-----~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~ 353 (356)
T TIGR00901 288 TNAGFVWLASNG--HH-----DG-ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GATQMALLSSL 353 (356)
T ss_pred HHHHHHHHHhcC--cc-----cc-cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cHHHHHHHHHH
Confidence 766554432100 00 00 000134566777888899999999999999999999998 89999987655
Q ss_pred HH
Q 044175 175 TT 176 (537)
Q Consensus 175 ~~ 176 (537)
.+
T Consensus 354 ~~ 355 (356)
T TIGR00901 354 SA 355 (356)
T ss_pred Hh
Confidence 44
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.83 E-value=1e-07 Score=99.43 Aligned_cols=161 Identities=14% Similarity=0.104 Sum_probs=130.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHH
Q 044175 15 RACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVL 94 (537)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i 94 (537)
|....+++..++..++.....+..+.|.+..+|.+ ...+.+.....+...++.++.++++||+ |+||++..+.++.++
T Consensus 225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~~ 302 (428)
T PF13347_consen 225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAAL 302 (428)
T ss_pred chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHHH
Confidence 46677888888888888877788888888888876 5677788888999999999999999995 999999999999999
Q ss_pred HHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChh-hhhhhhhHHHHHHH
Q 044175 95 ALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPK-GAKALASYFNYFLL 173 (537)
Q Consensus 95 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~ 173 (537)
+.+++.+.. .++.+.+++..++.|++.|...+...++++|..+.++-+ .+++.+..++.+..
T Consensus 303 ~~~~~~~~~-----------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~ 365 (428)
T PF13347_consen 303 GFLLLFFLG-----------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSF 365 (428)
T ss_pred HHHHHHHHH-----------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhh
Confidence 998888774 136788888899999999999999999999998854322 12224667777778
Q ss_pred HHHHHHHHHHHHHhhhccccc
Q 044175 174 TTTLAAVIGVTAIVYVSTEKA 194 (537)
Q Consensus 174 ~~~~g~~i~~~~~~~l~~~~g 194 (537)
...+|..+++.+.+.+.+..|
T Consensus 366 ~~k~~~~la~~i~g~~l~~~G 386 (428)
T PF13347_consen 366 FIKIGQGLAGAIVGLLLALVG 386 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHhC
Confidence 888999999988887654333
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.2e-07 Score=90.36 Aligned_cols=163 Identities=12% Similarity=0.072 Sum_probs=130.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHH
Q 044175 16 ACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLA 95 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~ 95 (537)
..|.+.+..-..++.||.+..++|.++. |.|+|..++|++++...+......+..-.+++|.-.+|+........+.+|
T Consensus 209 ~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G 287 (395)
T COG2807 209 LAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVG 287 (395)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 5788888889999999999999999986 579999999999999999999999999999997557888888888888888
Q ss_pred HHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHH
Q 044175 96 LVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTT 175 (537)
Q Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 175 (537)
.+.+.+.+ .+...+ ..+++|+|.|+..|....++.+..++.+ + .++.-++.+...
T Consensus 288 ~~G~~~~P------------------~~~~~l--w~~llG~G~G~~F~laL~li~~rs~~a~--~---Aa~LSgmaQg~G 342 (395)
T COG2807 288 LVGLLLAP------------------GQLPIL--WALLLGLGQGGAFPLALTLILLRSSDAA--I---AAALSGMAQGVG 342 (395)
T ss_pred HHHHHHhh------------------hhHHHH--HHHHHhCccchHHHHHHHHHHhhcCChH--H---HHHHHHHhhhhh
Confidence 88777764 122222 2488999999999999999998876432 1 445555555556
Q ss_pred HHHHHHHHHHHhhhccccc-chHHHHHHHH
Q 044175 176 TLAAVIGVTAIVYVSTEKA-WWGGFLISSI 204 (537)
Q Consensus 176 ~~g~~i~~~~~~~l~~~~g-~~~~f~i~~~ 204 (537)
.+=+++||.+.|++.|..| |...+..-+.
T Consensus 343 YllAa~GP~l~G~lhDa~gsw~~~~~~l~~ 372 (395)
T COG2807 343 YLLAAFGPWLFGFLHDATGSWSAPLVLLAL 372 (395)
T ss_pred HHHHhhhhhhHhHHHHhcCChHHHHHHHHH
Confidence 6777889999999988765 7766654333
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.6e-07 Score=95.15 Aligned_cols=157 Identities=8% Similarity=-0.116 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccc
Q 044175 28 NMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEK 107 (537)
Q Consensus 28 ~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~ 107 (537)
..........++.|+++.+|.++.+.+.+.....++..++.++.+++.||+ ++++++..+.. ..+.........
T Consensus 218 ~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~-~~~~~~~~~~~~---- 291 (393)
T PRK11195 218 WGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGIL-MGLVVLLMALQH---- 291 (393)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHH-HHHHHHHHHHHh----
Confidence 444455556677888889999999999999999999999999999999995 99998888753 333333333321
Q ss_pred cCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 044175 108 LHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIV 187 (537)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~ 187 (537)
+.+...+..++.|++.+...+...+.+.|..|++. .+++..+..+...++|..++..+.+
T Consensus 292 ---------------~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-----~~g~~~a~~~~~~~~~~~~~~~~~~ 351 (393)
T PRK11195 292 ---------------SLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-----GAGHSIAVQNFNENLAMLLMLGLYS 351 (393)
T ss_pred ---------------HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-----cchhHHHHHhHHHHHHHHHHHHHHH
Confidence 44555667778899999888888888877544322 1588888888899999999998888
Q ss_pred hhcccccchHHHHHHHHHHHHHHH
Q 044175 188 YVSTEKAWWGGFLISSIVTFIGFI 211 (537)
Q Consensus 188 ~l~~~~g~~~~f~i~~~~~~~~~~ 211 (537)
.+ ...|-+..+.+.....+....
T Consensus 352 ~~-~~~~~~~~~~~~~~~~~~~~~ 374 (393)
T PRK11195 352 LL-VKLGVPVVAVIVGFGLLVALA 374 (393)
T ss_pred HH-HHcCCCHHHHHHHHHHHHHHH
Confidence 66 456766666554444333333
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=7e-08 Score=113.26 Aligned_cols=183 Identities=11% Similarity=-0.103 Sum_probs=131.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHH
Q 044175 15 RACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVL 94 (537)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i 94 (537)
+.++...+..++..+.++++..+++.|+++.+|.+..+.+++.+.+.++..++.++.|+++|++ ++++.+..+.++..+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~ 303 (1140)
T PRK06814 225 KRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGL 303 (1140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHH
Confidence 3566666666777777778888999999999999999999999999999999999999999985 777776666665555
Q ss_pred HHHHHHHHhhccccCCCCCCC-CCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHH
Q 044175 95 ALVMITVQAYSEKLHPPDCGK-SSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLL 173 (537)
Q Consensus 95 ~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 173 (537)
+.+.+.+............-- .......+.+.+.++.++.|++.+...+...+++.+.+|++. +++.++..+.
T Consensus 304 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~G~v~g~~~~ 377 (1140)
T PRK06814 304 FGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------RARVIAANNV 377 (1140)
T ss_pred HHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------ceeeeHHHHH
Confidence 544333320000000000000 000000244566777888999999999999999999999888 8999999998
Q ss_pred HHHHHHHHHHHHHhhhcc-cccchHHHHHHHH
Q 044175 174 TTTLAAVIGVTAIVYVST-EKAWWGGFLISSI 204 (537)
Q Consensus 174 ~~~~g~~i~~~~~~~l~~-~~g~~~~f~i~~~ 204 (537)
..++|..+++++.+.+.. ..++...|.+.+.
T Consensus 378 ~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~ 409 (1140)
T PRK06814 378 LNAAFMVAGTIILALLQALGFSIPWIILFIAL 409 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 999999999999888863 3455555554333
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.2e-08 Score=103.92 Aligned_cols=132 Identities=11% Similarity=-0.031 Sum_probs=95.9
Q ss_pred HHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHh
Q 044175 58 TNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALG 137 (537)
Q Consensus 58 ~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g 137 (537)
....+....+.+++++++||+ |||+.+.++.++.+++.+++..... .......+..++.+++
T Consensus 362 ~~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~~~-----------------~~~~~~~~~~~~~~~~ 423 (505)
T TIGR00898 362 FISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFVPV-----------------DLYFLRTALAVLGKFG 423 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHcCC-----------------CchHHHHHHHHHHHHH
Confidence 344566778889999999995 9999999998888888777666531 1223334444556666
Q ss_pred cccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHh
Q 044175 138 SGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVI 215 (537)
Q Consensus 138 ~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~ 215 (537)
.+...+....+.+|.+|++. |++++++......+|+.++|.+.+ +. ..++..++.+.+...+++.+..++
T Consensus 424 ~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~ 493 (505)
T TIGR00898 424 ITSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVLFGGLALLAGILTLF 493 (505)
T ss_pred HHHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHHHHHHHHHHHHHHHc
Confidence 66777888899999999877 899999999889999999999988 43 345556666655554444444333
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.4e-07 Score=89.00 Aligned_cols=149 Identities=11% Similarity=0.096 Sum_probs=104.5
Q ss_pred hhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCch
Q 044175 44 NEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGI 123 (537)
Q Consensus 44 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (537)
++.|++..|++.+.........+..++.|.++||+ ||||..+..++++.++.+..-. .+
T Consensus 62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k~~--------------------~~ 120 (354)
T PF05631_consen 62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTKHS--------------------SN 120 (354)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhc--------------------cc
Confidence 57899999999999999999999999999999995 9999999999999988864332 36
Q ss_pred hHHHHHHHHHHHHhcccccccchhh-cccCCCCCChhhhhhhhhHHHHHH-HHHHHHHHHHHHHHhhhcccccc--hHHH
Q 044175 124 AAYFYASLCLYALGSGGVRGALPAL-GAGQFDEKDPKGAKALASYFNYFL-LTTTLAAVIGVTAIVYVSTEKAW--WGGF 199 (537)
Q Consensus 124 ~~~~~~~~~l~g~g~g~~~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~i~~~~~~~l~~~~g~--~~~f 199 (537)
+..++++|++-|+++.....+--+. +.|.-...-|++ ..+.-++... ....+-++.+..++-++.+..+. ..+|
T Consensus 121 ~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~--~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF 198 (354)
T PF05631_consen 121 YPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQE--WLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPF 198 (354)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH--HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchH
Confidence 7899999999999999888877665 444422222221 1333333322 12223344444555555554443 6788
Q ss_pred HHHHHHHHHHHHHHHh
Q 044175 200 LISSIVTFIGFIALVI 215 (537)
Q Consensus 200 ~i~~~~~~~~~~~~~~ 215 (537)
..+.++..++.++...
T Consensus 199 ~~a~~~l~~~~~~I~~ 214 (354)
T PF05631_consen 199 DAAIVLLAVAAVLILK 214 (354)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8887776666555443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.3e-07 Score=93.45 Aligned_cols=71 Identities=11% Similarity=0.106 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHh
Q 044175 32 IANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQA 103 (537)
Q Consensus 32 ~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~ 103 (537)
.......+.|+++++|+++.+.+.+.....+...++.++.|++.||+ |||+.+.++..+..++.+.+....
T Consensus 220 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~ 290 (392)
T PRK10473 220 LTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALSP 290 (392)
T ss_pred HHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556777888999999999999999999999999999999995 999999999988888887776653
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.6e-07 Score=93.08 Aligned_cols=165 Identities=12% Similarity=-0.020 Sum_probs=110.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchh---HHHHH-HHH
Q 044175 15 RACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRF---ATCLI-FGT 90 (537)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~---~~~~~-~~~ 90 (537)
|.+|.+.+..++....+|++..+++.|+++ .|++.. .+......... +.+..++++||. .|| +.... ...
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~---g~~g~~~~~d~~-~r~~~r~~~~~~~~~ 265 (368)
T TIGR00903 192 KDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILA---GLIGVAVIPDRV-ARAGLRSIYIRAAAL 265 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHH---HHHHHHHhhHHh-hhhhhHHHHHHHHHH
Confidence 467888889999999999999999999964 677754 45444444443 334458888884 553 33222 333
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHH
Q 044175 91 LEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNY 170 (537)
Q Consensus 91 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 170 (537)
+.++......... +....++...+.+++.....+...++.+|.+|++. |+++.++
T Consensus 266 ~~a~~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------rgt~~G~ 320 (368)
T TIGR00903 266 LIAAFFLALAFEL-------------------NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL------HGKAAGA 320 (368)
T ss_pred HHHHHHHHHHHcc-------------------ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh------cCcccch
Confidence 3333333333221 22233444455666666777778889999999888 9999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHH
Q 044175 171 FLLTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIA 212 (537)
Q Consensus 171 ~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~ 212 (537)
.+...++|+..+|.+.+.+.. +.+..|.+.++..+++.+.
T Consensus 321 ~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~ 360 (368)
T TIGR00903 321 IGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAI 360 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHH
Confidence 999999999999988887663 5566666555544444443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=8.7e-08 Score=100.92 Aligned_cols=176 Identities=13% Similarity=0.169 Sum_probs=146.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccc--hhHHHHHHHHHH
Q 044175 15 RACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLS--RFATCLIFGTLE 92 (537)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G--r~~~~~~~~~~~ 92 (537)
+.++.+.+...+..++|+.-...++.|.+ ..+++..+++.++++..+...++.++.|+++|+. . ++.+..++++..
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~ 375 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIA 375 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHH
Confidence 46677888888888888888888888887 7899999999999999999999999999999995 7 445555556666
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHH
Q 044175 93 VLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFL 172 (537)
Q Consensus 93 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 172 (537)
.++...+++.. ++..++..-++.|++.|...+..+..+.|....++ ...++++..
T Consensus 376 gl~~~~~p~~~-------------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------l~~a~Gl~l 430 (509)
T KOG2504|consen 376 GLARLFLPFAT-------------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------LSNAYGLLL 430 (509)
T ss_pred HHHHHHHHHhc-------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------cchHHHHHH
Confidence 66666666653 66777777788999999998888888999999887 899999999
Q ss_pred HHHHHHHHHHHHHHhhhccccc-chHHHHHHHHHHHHHHHHHHhcc
Q 044175 173 LTTTLAAVIGVTAIVYVSTEKA-WWGGFLISSIVTFIGFIALVIGK 217 (537)
Q Consensus 173 ~~~~~g~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~~~~ 217 (537)
....++.++||.++|++.+..+ |...|+.+....+++...++...
T Consensus 431 ~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 431 LFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 9999999999999999988877 99999988887777666555443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.5e-08 Score=97.53 Aligned_cols=143 Identities=20% Similarity=0.197 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc-hhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHH
Q 044175 18 GFIFVLSSLENMGFIANAISMVLYFKNEMHFN-LAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLAL 96 (537)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~ 96 (537)
|.+....++..+.++....+.+.|+.+++|++ ..+.+.+.....+...++.++.|+++||+ |+|+...+......++.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~ 287 (352)
T PF07690_consen 209 WILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLILGA 287 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHH
Confidence 34555556666677788899999999999999 78999999999999999999999999995 99888888877777776
Q ss_pred HHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHH
Q 044175 97 VMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTT 176 (537)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 176 (537)
+.+..... .++..+.++..++.|++.+...+...+++.|..|+++ +++..+......+
T Consensus 288 ~~~~~~~~----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~ 345 (352)
T PF07690_consen 288 LGLLLLPF----------------SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY------RGTAFGLFNSIGS 345 (352)
T ss_dssp HHHCCSHH----------------HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH------HHHHHHHHHHHHH
T ss_pred HHHHHHHH----------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHH
Confidence 66554431 1245666677888999999999999999999998877 8999999999999
Q ss_pred HHHHHHH
Q 044175 177 LAAVIGV 183 (537)
Q Consensus 177 ~g~~i~~ 183 (537)
+|..++|
T Consensus 346 ~~~~igP 352 (352)
T PF07690_consen 346 LGGIIGP 352 (352)
T ss_dssp HHHHHHH
T ss_pred HHHHHCC
Confidence 9999887
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.5e-07 Score=90.63 Aligned_cols=148 Identities=6% Similarity=-0.057 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHH
Q 044175 17 CGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLAL 96 (537)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~ 96 (537)
.+...+...+...+.+....+.+.++.+++|+++.+.+.+.....++..++.+++|+++||+ |||+++.++..+..+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~ 274 (377)
T PRK11102 196 VLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIMG 274 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHH
Confidence 34444445555555666666677788888999999999999999999999999999999995 99999999887655543
Q ss_pred HHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHH-HH
Q 044175 97 VMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLL-TT 175 (537)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~ 175 (537)
+.+...... ..+.....++..+.+.+.+...+.....+.|..| +. +++..+.... ..
T Consensus 275 ~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~~~~ 332 (377)
T PRK11102 275 IWLVVSALL---------------DLGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM------AGTASSLAGTLRF 332 (377)
T ss_pred HHHHHHHHH---------------hhhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc------chHHHHHHHHHHH
Confidence 333222100 0133334444444555555556666666777766 44 5666666443 33
Q ss_pred HHHHHHHHHHHh
Q 044175 176 TLAAVIGVTAIV 187 (537)
Q Consensus 176 ~~g~~i~~~~~~ 187 (537)
.+|..+++.+++
T Consensus 333 ~~g~~~g~~~~~ 344 (377)
T PRK11102 333 GIGAIVGALLSL 344 (377)
T ss_pred HHHHHHHHHHHh
Confidence 466777766654
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.7e-07 Score=97.48 Aligned_cols=165 Identities=10% Similarity=-0.015 Sum_probs=115.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHH
Q 044175 15 RACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVL 94 (537)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i 94 (537)
|.+..+++..++...+.+......+.|.+..++ +....+.+.....++..++.++.++++||+ |||+++.++.++.++
T Consensus 231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~ 308 (473)
T PRK10429 231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVL 308 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHH
Confidence 556667777777777766666666545544444 455666666667788899999999999995 999999999887776
Q ss_pred HHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCCh-hhhhhhhhHHHHHHH
Q 044175 95 ALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDP-KGAKALASYFNYFLL 173 (537)
Q Consensus 95 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~-~~~~~r~~~~~~~~~ 173 (537)
+.+........+ .++...+++.-++.+++.+...+...++++|..+.++- ..++..+..++....
T Consensus 309 ~~~~~~~~~~~~--------------~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~ 374 (473)
T PRK10429 309 SCGVLLLMGLAA--------------PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTM 374 (473)
T ss_pred HHHHHHHHhccC--------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHH
Confidence 665554321000 12455666677788999999999999999999774321 111224556777778
Q ss_pred HHHHHHHHHHHHHhhhcccccc
Q 044175 174 TTTLAAVIGVTAIVYVSTEKAW 195 (537)
Q Consensus 174 ~~~~g~~i~~~~~~~l~~~~g~ 195 (537)
...+|..+++.+.|++.+..|+
T Consensus 375 ~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 375 VVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC
Confidence 8889999999988887654444
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.5e-06 Score=89.74 Aligned_cols=151 Identities=7% Similarity=-0.025 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHH
Q 044175 23 LSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQ 102 (537)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~ 102 (537)
...+....++....+.+.|++ +.|++..+.+........+..++.++++++.||+ |||+.+....+...++.+.+...
T Consensus 211 ~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~ 288 (401)
T PRK11043 211 IFAACSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVIAIWLA 288 (401)
T ss_pred HHHHHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555666677777775 5799999999888888888899999999999995 99998777666655554433322
Q ss_pred hhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHH
Q 044175 103 AYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIG 182 (537)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~ 182 (537)
.... ..+.....+...+.+++.+...+...+...|..|+ + ++++.++.......++..+
T Consensus 289 ~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~g~~~g~~~~~~~~~~~~~ 347 (401)
T PRK11043 289 SLLS--------------HPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQ-A------TGKAAALQNTLQLGLCFLA 347 (401)
T ss_pred HHhc--------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc-c------ChHHHHHHHHHHHHHHHHH
Confidence 1100 12344455566778888888888888877777663 4 6888888877767777788
Q ss_pred HHHHhhhcccccch
Q 044175 183 VTAIVYVSTEKAWW 196 (537)
Q Consensus 183 ~~~~~~l~~~~g~~ 196 (537)
+.+.+.+.+.....
T Consensus 348 ~~~~g~l~~~~~~~ 361 (401)
T PRK11043 348 SLLVSALISTPLLT 361 (401)
T ss_pred HHHHHHccCCChhH
Confidence 88888776643333
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.9e-07 Score=97.87 Aligned_cols=160 Identities=12% Similarity=0.073 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHH
Q 044175 17 CGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLAL 96 (537)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~ 96 (537)
.+.+++..++...+..........|.+..++ +++..+.+.....+...++.++.++++||+ |||+.+.++.+...++.
T Consensus 231 ~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~~~ 308 (444)
T PRK09669 231 WRIMFIFNVVLLTAVVTRGGATLYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVILS 308 (444)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhheeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHH
Confidence 4444444454444443333333333333343 233344555566777888899999999995 99999998877666544
Q ss_pred HHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChh-hhhhhhhHHHHHHHHH
Q 044175 97 VMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPK-GAKALASYFNYFLLTT 175 (537)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~ 175 (537)
....+.. .++...+++..++.|++.+...+...++++|..+.++.+ .++..+..++.+..+.
T Consensus 309 ~~~~~~~-----------------~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~ 371 (444)
T PRK09669 309 ALIFFIP-----------------PSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAI 371 (444)
T ss_pred HHHHHhC-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHH
Confidence 4333321 135566777778899999999999999999998744321 1122456677777888
Q ss_pred HHHHHHHHHHHhhhcccccc
Q 044175 176 TLAAVIGVTAIVYVSTEKAW 195 (537)
Q Consensus 176 ~~g~~i~~~~~~~l~~~~g~ 195 (537)
.+|.++++.++|++.+..|+
T Consensus 372 klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 372 KLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHHHHHHHHHHcCC
Confidence 99999999999887655554
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.7e-07 Score=91.20 Aligned_cols=189 Identities=17% Similarity=0.045 Sum_probs=123.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHH
Q 044175 13 GFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLE 92 (537)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~ 92 (537)
.++...+.+...++..+............+-++-|++..++.+.+........+.++++.++.||+ |||+.++.+..++
T Consensus 267 lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~~ 345 (485)
T KOG0569|consen 267 LRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSLM 345 (485)
T ss_pred hhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHH
Confidence 344566666667776666544444444555567899999999999999999999999999999995 9999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCccCCchhH-HHHHHHHHHHHhccc-ccccchhhcccCCCCCChhhhhhhhhHHHH
Q 044175 93 VLALVMITVQAYSEKLHPPDCGKSSCVKGGIAA-YFYASLCLYALGSGG-VRGALPALGAGQFDEKDPKGAKALASYFNY 170 (537)
Q Consensus 93 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~g~g~g~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 170 (537)
.+..+++.......+.. ..-.. ..+++.++..++.+. ..|...-+.+|.+|+.. |..++++
T Consensus 346 ~~~~~~~~~~~~l~~~~-----------~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~------R~aa~s~ 408 (485)
T KOG0569|consen 346 AVALLLMSIALFLSNSF-----------GSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA------RSAAQSV 408 (485)
T ss_pred HHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc------hHHHHHH
Confidence 98888776543211100 00011 123344343333332 25677788999999887 8888888
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHhccccc
Q 044175 171 FLLTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFY 220 (537)
Q Consensus 171 ~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~ 220 (537)
......+...+-...-..+.+..|- ..|++-++.+++..+..+...|+.
T Consensus 409 ~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPET 457 (485)
T KOG0569|consen 409 ATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPET 457 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCccc
Confidence 7666656555555555555555553 455554455555555555444443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.1e-07 Score=91.60 Aligned_cols=163 Identities=8% Similarity=-0.054 Sum_probs=117.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHH
Q 044175 16 ACGFIFVLSSLENMGFIANAISMVLYFKNE-MHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVL 94 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i 94 (537)
..+...+..++-.....++.++++.|+.+. .+.+....+...+.+.....++.+++|+++||+ ++||++.++.+...+
T Consensus 233 ~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~ 311 (410)
T TIGR00885 233 HYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMA 311 (410)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHH
Confidence 344455556665566667778889998653 255555556667777788899999999999995 999999998888887
Q ss_pred HHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHH
Q 044175 95 ALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLT 174 (537)
Q Consensus 95 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 174 (537)
..++..... +. ......++.|+..+.++|+..+...+..+++. +.....+ . +
T Consensus 312 ~~ll~~~~~-------------------~~-~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~------~~~s~~l-~-~ 363 (410)
T TIGR00885 312 LCLGSIFAG-------------------GH-VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDT------KYGAAGL-V-M 363 (410)
T ss_pred HHHHHHHcC-------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------hhhHHHH-H-H
Confidence 777766642 21 23456677888889999999999999887554 2222222 2 2
Q ss_pred HHHHHHHHHHHHhhhcccc------cchHHHHHHHHHHH
Q 044175 175 TTLAAVIGVTAIVYVSTEK------AWWGGFLISSIVTF 207 (537)
Q Consensus 175 ~~~g~~i~~~~~~~l~~~~------g~~~~f~i~~~~~~ 207 (537)
..+|+++.|.+.|++.|.. +.+..|+++.++.+
T Consensus 364 ~~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~ 402 (410)
T TIGR00885 364 AIIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFA 402 (410)
T ss_pred HHhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHH
Confidence 3499999999999999853 47788887766543
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=8.1e-07 Score=86.28 Aligned_cols=146 Identities=10% Similarity=0.072 Sum_probs=105.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--C-----------------CchhhHHHHHHHHHHHHHHHhhHhHHHh
Q 044175 15 RACGFIFVLSSLENMGFIANAISMVLYFKNEM--H-----------------FNLAGASNTLTNLMGSTFLLCLVGGFIS 75 (537)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l--~-----------------~~~~~~~~~~~~~~~~~~~~~~~~G~la 75 (537)
|..+.+-.+-+.+++.||+++-......+... | .+..+-.-=+.+..+.-..+.++.+++.
T Consensus 326 kttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iv 405 (528)
T KOG0253|consen 326 KTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIV 405 (528)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHH
Confidence 45556677778899999998866554443211 1 1111112223345677788999999999
Q ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCC
Q 044175 76 DTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDE 155 (537)
Q Consensus 76 D~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~ 155 (537)
|| +||||++..+.+++.+.++++...-.. .....+++.+|+++. +...+.+.|..|.+|.
T Consensus 406 er-lGRKkTMal~l~~f~iflfll~~c~~r---------------n~~tvllf~arafis----g~fqvaYvYtPEVyPT 465 (528)
T KOG0253|consen 406 ER-LGRKKTMALSLILFGIFLFLLTTCKTR---------------NAYTVLLFTARAFIS----GAFQVAYVYTPEVYPT 465 (528)
T ss_pred HH-hcchhHHHHHHHHHHHHHHHHHHhcCc---------------chhHHHHHHHHHHHh----chheEEEEecCcccch
Confidence 99 599999999999999988877655210 123356677777653 4467778899999998
Q ss_pred CChhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 044175 156 KDPKGAKALASYFNYFLLTTTLAAVIGVTAI 186 (537)
Q Consensus 156 ~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~ 186 (537)
.. |+.+.+....+.-+|+++.|+++
T Consensus 466 av------RatgvGtcSsmaRIggI~~p~iA 490 (528)
T KOG0253|consen 466 AV------RATGVGTCSSMARIGGIFSPVIA 490 (528)
T ss_pred hh------hhcchhhhhhHHhhhhhhhhHHH
Confidence 88 89999998888899999999998
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.6e-06 Score=87.46 Aligned_cols=173 Identities=10% Similarity=-0.018 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHH
Q 044175 17 CGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLAL 96 (537)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~ 96 (537)
+...++..++...+.-....+...|+++.-|.+....+.+.+...+.-.+.-.+.+++-.|+ |.|+++.++.+..++=.
T Consensus 209 ~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~vR~ 287 (400)
T PF03825_consen 209 FLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAVRW 287 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence 44445555566666666678889999765447778888888888888889999999999995 99999999999988887
Q ss_pred HHHHHHhhccccCCCCCCCCCccCCchhH----HHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHH
Q 044175 97 VMITVQAYSEKLHPPDCGKSSCVKGGIAA----YFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFL 172 (537)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 172 (537)
.+.+... ++.+ ...++..+.|+..|........++.+..|++. |+++.+++.
T Consensus 288 ~l~a~~~------------------~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l~~ 343 (400)
T PF03825_consen 288 LLYAYFS------------------DPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGLYS 343 (400)
T ss_pred HHHHHhc------------------CCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHHHH
Confidence 7777662 1222 22334567999999999999999999999988 899999877
Q ss_pred HH-HHHHHHHHHHHHhhhcccccch------HHHHHHHHHHHHHHHHHH
Q 044175 173 LT-TTLAAVIGVTAIVYVSTEKAWW------GGFLISSIVTFIGFIALV 214 (537)
Q Consensus 173 ~~-~~~g~~i~~~~~~~l~~~~g~~------~~f~i~~~~~~~~~~~~~ 214 (537)
.. ..+|.++|..++|++.+.+|-+ ..+.+++...++..+++.
T Consensus 344 ~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~ 392 (400)
T PF03825_consen 344 ALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFV 392 (400)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 54 5699999999999998876644 344455544444444433
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.7e-06 Score=92.55 Aligned_cols=203 Identities=13% Similarity=0.162 Sum_probs=153.3
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHH
Q 044175 13 GFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLE 92 (537)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~ 92 (537)
..+.+..+.....+....+.+.......-+.+.++++..+.|++.+.+-++..+...+..+.+-|. =|-|.+-+++++.
T Consensus 94 ~~k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m 172 (735)
T KOG3626|consen 94 NIKMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLM 172 (735)
T ss_pred CcchHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHH
Confidence 445566666666666666667778888888999999999999999999999999999999999994 8888999999999
Q ss_pred HHHHHHHHHHhhcc------------ccCCC--------------CCC--CCCcc---CCc--hhHHHHHHHHHHHHhcc
Q 044175 93 VLALVMITVQAYSE------------KLHPP--------------DCG--KSSCV---KGG--IAAYFYASLCLYALGSG 139 (537)
Q Consensus 93 ~i~~~l~~~~~~~~------------~~~~~--------------~~~--~~~~~---~~~--~~~~~~~~~~l~g~g~g 139 (537)
++|.+++++-.... .-..| .|. .++|. +.+ -..+++++.++.|+|..
T Consensus 173 ~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~T 252 (735)
T KOG3626|consen 173 GLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGAT 252 (735)
T ss_pred HHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCC
Confidence 99999887521100 00000 010 12232 111 22367788899999999
Q ss_pred cccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcc-----------------cc--cchHHHH
Q 044175 140 GVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVST-----------------EK--AWWGGFL 200 (537)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~-----------------~~--g~~~~f~ 200 (537)
...+.-.+|+=|...+++ -...+++.+....+|.++|.++++++.. .| .||..|+
T Consensus 253 pi~tlGisYiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFL 326 (735)
T KOG3626|consen 253 PIFTLGISYIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFL 326 (735)
T ss_pred CCccCCCccccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHH
Confidence 999999999999887766 5778888898999999999999987641 11 3899999
Q ss_pred HHHHHHHHHHHHHHhccccccc
Q 044175 201 ISSIVTFIGFIALVIGKPFYRN 222 (537)
Q Consensus 201 i~~~~~~~~~~~~~~~~~~~~~ 222 (537)
+.+.+.++..+.++++.+..++
T Consensus 327 i~g~~~~~~a~p~f~fPk~lp~ 348 (735)
T KOG3626|consen 327 ICGALLLFSAVPLFFFPKELPK 348 (735)
T ss_pred HHHHHHHHHHHHHHhCcccCcc
Confidence 9888888888777777665443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.4e-07 Score=91.61 Aligned_cols=139 Identities=16% Similarity=0.075 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHH
Q 044175 16 ACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLA 95 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~ 95 (537)
..+.+.+..++....++++..+.+.|+++.+|+++.+++.+.....+...++.+++|+++||+ |||+.+..+..+...+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~ 304 (366)
T TIGR00886 226 HTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAMG 304 (366)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHHH
Confidence 345555555666666778888899999999999999999999999999999999999999995 9999888887776666
Q ss_pred HHHHHHHhhccccCCCCCCCCCccCCc-hhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHH
Q 044175 96 LVMITVQAYSEKLHPPDCGKSSCVKGG-IAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLT 174 (537)
Q Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 174 (537)
..++..... .+ +...+.+...+.+++.|...+...++++|..|+ + +++..+.....
T Consensus 305 ~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~------~g~~~g~~~~~ 361 (366)
T TIGR00886 305 AFLVVLGLV----------------SPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFRR-A------TGAVSGLVGAI 361 (366)
T ss_pred HHHHHhcCC----------------CcchHHHHHHHHHHHHHHhccccchhhhcchhhchh-h------cccHHHHHHHh
Confidence 665554321 01 344444555556666666667777778888763 3 68888877666
Q ss_pred HHHH
Q 044175 175 TTLA 178 (537)
Q Consensus 175 ~~~g 178 (537)
.++|
T Consensus 362 ~~~g 365 (366)
T TIGR00886 362 GNLG 365 (366)
T ss_pred ccCC
Confidence 6554
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.1e-06 Score=91.54 Aligned_cols=176 Identities=16% Similarity=0.113 Sum_probs=118.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchh-----HHHHHH--
Q 044175 16 ACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRF-----ATCLIF-- 88 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~-----~~~~~~-- 88 (537)
.+|.+.+..+++..+++....+.|.|+++.+|++..+.|++.+.-.+...+..+++|.++||. -+| .+..+.
T Consensus 259 ~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l-~~~~ls~t~~rkifn~ 337 (466)
T KOG2532|consen 259 PVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRL-TFRILSETTVRKIFNT 337 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hhccCchHhHHHHHHh
Confidence 689999999999999999999999999999999999999999999999999999999999995 331 111222
Q ss_pred HHHHHHH--HHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhh
Q 044175 89 GTLEVLA--LVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALAS 166 (537)
Q Consensus 89 ~~~~~i~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 166 (537)
......+ .+.+++.. .++....++...+.-...|...+-...-..|..|.+ -+.
T Consensus 338 i~~~~~ai~l~~l~~~~-----------------~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~-------a~~ 393 (466)
T KOG2532|consen 338 IAFGGPAVFLLVLAFTS-----------------DEHRLLAVILLTIAIGLSGFNISGFYKNHQDIAPQH-------AGF 393 (466)
T ss_pred HHHHHHHHHHHeeeecC-----------------CCcchHHHHHHHHHHHHcccchhhhHhhhhhccchH-------HHH
Confidence 1222222 22222221 011111122211111112222222233233434433 478
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccc---ccchHHHHHHHHHHHHHHHHHHhc
Q 044175 167 YFNYFLLTTTLAAVIGVTAIVYVSTE---KAWWGGFLISSIVTFIGFIALVIG 216 (537)
Q Consensus 167 ~~~~~~~~~~~g~~i~~~~~~~l~~~---~g~~~~f~i~~~~~~~~~~~~~~~ 216 (537)
.++..+...++.+.++|.+.+.+..+ ..|+..|++.+++.++..+.+.+.
T Consensus 394 l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 394 VMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred HHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 88888889999999999999998843 369999999998887777655444
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=9.1e-06 Score=83.67 Aligned_cols=139 Identities=8% Similarity=-0.041 Sum_probs=96.5
Q ss_pred HHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 044175 35 AISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCG 114 (537)
Q Consensus 35 ~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 114 (537)
....+.|+++.+|.+..+.+++......+..++.++.+++.||+ ||+... +.....++.+.........
T Consensus 227 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~-------- 295 (394)
T PRK11652 227 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMWQ--SVICCLLAGLLMWIPGWFG-------- 295 (394)
T ss_pred HHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHhc--------
Confidence 44556688877999999999988888888888889999999995 743332 2222233322221111000
Q ss_pred CCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 044175 115 KSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVSTEKA 194 (537)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g 194 (537)
..+...+.++.++.++|.+...|...+...|.+|+ + +++..+......++|..+++.+++++.....
T Consensus 296 ------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~------~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~~ 362 (394)
T PRK11652 296 ------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY-L------AGTAGALLGGLQNIGSGLAALLSAMLPQTGQ 362 (394)
T ss_pred ------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c------chHHHHHHHHHHHHHHHHHHHHHHHccCCch
Confidence 11345566777889999999999999999888873 3 5777777777789999999999988876544
Q ss_pred chH
Q 044175 195 WWG 197 (537)
Q Consensus 195 ~~~ 197 (537)
+..
T Consensus 363 ~~~ 365 (394)
T PRK11652 363 FSL 365 (394)
T ss_pred HHH
Confidence 443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.4e-06 Score=90.27 Aligned_cols=184 Identities=9% Similarity=-0.003 Sum_probs=127.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhh----HHHHHHHHHHHHHHHhhHhH----HHhhhccchhHHH--
Q 044175 16 ACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAG----ASNTLTNLMGSTFLLCLVGG----FISDTFLSRFATC-- 85 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~G----~laD~~~Gr~~~~-- 85 (537)
.+..+++...+-...|....+.++.|.+++.+.+... .+++.+...+...+.+++-. ++.||..+.+...
T Consensus 273 ~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~ 352 (475)
T TIGR00924 273 AYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKF 352 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHH
Confidence 4455666666667777777788888887665443222 56666666666666766654 4555411334433
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhh
Q 044175 86 LIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALA 165 (537)
Q Consensus 86 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 165 (537)
.+|.++.+++...+++.....+- +...+.+++++..++.++|+....|...++++|..|++. |+
T Consensus 353 ~~G~~l~~~~~~~~~~~~~~~~~----------~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~------~g 416 (475)
T TIGR00924 353 TLGMLFCGASFLTFAASIWFADA----------GGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRL------MG 416 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCC----------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HH
Confidence 67888888887776654211000 002478889999999999999999999999999999877 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHh
Q 044175 166 SYFNYFLLTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVI 215 (537)
Q Consensus 166 ~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~ 215 (537)
+.++.+..+..+|..+++.+........+|...|....+.+++..++.+.
T Consensus 417 ~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (475)
T TIGR00924 417 QMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMAL 466 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888887666667777776655555444444433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.7e-06 Score=87.12 Aligned_cols=158 Identities=13% Similarity=0.040 Sum_probs=119.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHH
Q 044175 16 ACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLA 95 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~ 95 (537)
+...+++..++...++.-..+.+..|.+..+|.+................++.++...|.+|+ |+|+++.++.++.+++
T Consensus 237 p~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i~ 315 (467)
T COG2211 237 PLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAVG 315 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHHH
Confidence 344455566666666655556666777777888888888888888888888899999999995 9999999999999999
Q ss_pred HHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhh-hhhhHHHHHHHH
Q 044175 96 LVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAK-ALASYFNYFLLT 174 (537)
Q Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~-~r~~~~~~~~~~ 174 (537)
.+++.+.+ .++..++++..++.++|.+...+...++++|..+.+|-+.-+ .-+..++.+...
T Consensus 316 ~~~~~f~~-----------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~ 378 (467)
T COG2211 316 YLLLYFTP-----------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFF 378 (467)
T ss_pred HHHHHhhc-----------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHH
Confidence 99988875 247788888999999999999999999999997754432211 123344445555
Q ss_pred HHHHHHHHHHHHhhhcc
Q 044175 175 TTLAAVIGVTAIVYVST 191 (537)
Q Consensus 175 ~~~g~~i~~~~~~~l~~ 191 (537)
.-+|.+++..+.|++.+
T Consensus 379 ~K~g~ala~~~~g~~L~ 395 (467)
T COG2211 379 RKLGLALAGFIPGWILG 395 (467)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66787777777666543
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.42 E-value=9.7e-06 Score=76.89 Aligned_cols=160 Identities=11% Similarity=0.029 Sum_probs=106.3
Q ss_pred HHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCC
Q 044175 36 ISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGK 115 (537)
Q Consensus 36 ~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 115 (537)
+.....+++.+|+++.|.+.+-..-.++..++ ++.|.+.|++ |.+.++.+|.+...+|..++..+.... +.
T Consensus 22 s~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~-gp~~~l~iG~~~~~~GY~~~~l~~~~~-i~------ 92 (250)
T PF06813_consen 22 SAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF-GPWVVLLIGAVLGFVGYGLLWLAVSGR-IP------ 92 (250)
T ss_pred hhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHhCc-cC------
Confidence 44556788999999999999999999998875 8889999995 999999999999999998887764211 10
Q ss_pred CCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 044175 116 SSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVSTEKAW 195 (537)
Q Consensus 116 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~ 195 (537)
....+.+.+..++.+.|.+...........+.||+ + |+++.++.-....+++.+-..+...+.+.-.-
T Consensus 93 -----~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~------RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~ 160 (250)
T PF06813_consen 93 -----SLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S------RGTVVGILKGFFGLSAAIFTQIYSAFFGDDPS 160 (250)
T ss_pred -----ccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c------cCceehhhhHHHHhHHHHHHHHHHHHcCCChH
Confidence 12455666666666666666555555556678884 4 78888886666666665544444434333222
Q ss_pred hHHHHHHHHHHHHHHHHHHhc
Q 044175 196 WGGFLISSIVTFIGFIALVIG 216 (537)
Q Consensus 196 ~~~f~i~~~~~~~~~~~~~~~ 216 (537)
...+.++.....+.++..++.
T Consensus 161 ~fll~la~~~~~v~l~~~~~v 181 (250)
T PF06813_consen 161 SFLLFLAVLPAVVCLVAMFFV 181 (250)
T ss_pred HHHHHHHHHHHHHHHHHhhhe
Confidence 333333333334444443433
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.9e-06 Score=83.82 Aligned_cols=170 Identities=11% Similarity=0.019 Sum_probs=132.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC---CchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHH
Q 044175 15 RACGFIFVLSSLENMGFIANAISMVLYFKNEMH---FNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTL 91 (537)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~ 91 (537)
|.+|.+.+........|+..-.-.+.|.+..++ .++...|.+.+...+.-.+.-.+..++-+| +|.|+.++++...
T Consensus 220 ~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~r-ig~k~~Lllag~i 298 (412)
T PF01306_consen 220 RNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINR-IGAKNLLLLAGVI 298 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHh-cChHhHHHHHHHH
Confidence 466776666666666666666667778775443 344557888888999999999999999999 5999999999988
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHH
Q 044175 92 EVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYF 171 (537)
Q Consensus 92 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 171 (537)
.++=...+++++ +++.+.+.+.+.++-.+........++++.+|++- .++...+.
T Consensus 299 ~~iRi~~~~~~~-------------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl------sAt~y~v~ 353 (412)
T PF01306_consen 299 MAIRIIGSGFAT-------------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL------SATLYLVG 353 (412)
T ss_dssp HHHHHHHHHT---------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG------HHHHHHHH
T ss_pred HHHHHHHHhhhc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH------HHHHHHHH
Confidence 888878888774 77889999999999999999999999999999655 45666553
Q ss_pred -HHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHH
Q 044175 172 -LLTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGF 210 (537)
Q Consensus 172 -~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~ 210 (537)
..+..+|..+.+.++|++-++.|++..|++-+.+.+...
T Consensus 354 ~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~ 393 (412)
T PF01306_consen 354 FQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFT 393 (412)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHH
Confidence 356778999999999999999999988876555544333
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.1e-05 Score=84.89 Aligned_cols=157 Identities=10% Similarity=-0.006 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHH
Q 044175 17 CGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLAL 96 (537)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~ 96 (537)
...++...++..++..........|.+..+|. +...+.+...+.+...++.+++++++||+ |+|+++..+..+..+..
T Consensus 230 ~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~~~ 307 (460)
T PRK11462 230 WRIVGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAVIS 307 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHH
Confidence 34444444555555444444444444433443 34455667778888899999999999995 99998876655444433
Q ss_pred HHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhh-hhhHHHHHHHHH
Q 044175 97 VMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKA-LASYFNYFLLTT 175 (537)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~ 175 (537)
++..+.+ ..+...+++..++.|++.+...+...++.+|..+.++-+...+ -+..++....+.
T Consensus 308 ~~~~~~~-----------------~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~ 370 (460)
T PRK11462 308 LAMFFVP-----------------MQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVL 370 (460)
T ss_pred HHHHHhc-----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHH
Confidence 3333322 1122334444566777777777777788888876432111111 233345555677
Q ss_pred HHHHHHHHHHHhhhccc
Q 044175 176 TLAAVIGVTAIVYVSTE 192 (537)
Q Consensus 176 ~~g~~i~~~~~~~l~~~ 192 (537)
.+|.++++.++|++.+.
T Consensus 371 Klg~alg~~i~g~iL~~ 387 (460)
T PRK11462 371 KLGLAFGGALIGWMLAY 387 (460)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888887766443
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00036 Score=71.80 Aligned_cols=100 Identities=14% Similarity=0.079 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHH
Q 044175 57 LTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYAL 136 (537)
Q Consensus 57 ~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 136 (537)
+.+-.....+.+++++.+-|+ +|.|..+.++...+..-....... +...++++-.+.|+
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~-i~~K~~lv~ga~~y~~f~~gfl~~--------------------N~y~~yfssallG~ 114 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNF-LGPKWALVIGATCYAAFPLGFLFP--------------------NSYYLYFSSALLGF 114 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHH-hhHHHHHHHHhHHHHHHHHHHHhc--------------------chHHHHHHHHHhhh
Confidence 566677788899999999999 599999999987776554433332 45778889999999
Q ss_pred hcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHH
Q 044175 137 GSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGV 183 (537)
Q Consensus 137 g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~ 183 (537)
|.+..+.-.-.+.+|..+++. +.+-.+..+.....+..+|.
T Consensus 115 Gaallw~GqG~ylt~~st~~t------ie~Nisi~Wai~~~~li~Gg 155 (461)
T KOG3098|consen 115 GAALLWTGQGGYLTSNSTRET------IERNISIFWAIGQSSLIIGG 155 (461)
T ss_pred hHHheecccceehhhcCChhh------HHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999887666 55556555544555544443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.1e-05 Score=78.56 Aligned_cols=174 Identities=17% Similarity=0.174 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHH
Q 044175 18 GFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALV 97 (537)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~ 97 (537)
...++..+...++|+.--..+-+|-.+.||++..|...++..+..+..++..+.|++..|..+++++-.+++....++..
T Consensus 211 ~~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~ 290 (403)
T PF03209_consen 211 RRFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFA 290 (403)
T ss_pred hHHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Confidence 34555556667777766677778888889999999999999999999999999999988656999999999999999988
Q ss_pred HHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHH
Q 044175 98 MITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTL 177 (537)
Q Consensus 98 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 177 (537)
+...+.. .++.+.+..+.++.|+|.|.......+..-|...+++ .+..++.+..+..+
T Consensus 291 lii~a~~----------------~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~WGaaQA~ 348 (403)
T PF03209_consen 291 LIILAGP----------------LGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGAWGAAQAI 348 (403)
T ss_pred HHHHHHh----------------cccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHHHHHHHHH
Confidence 8777653 2366889999999999999998888888889887666 67889998888888
Q ss_pred HHHHHHHHHhhhcc----------cccchHHHHHHHHHHHHHHHHH
Q 044175 178 AAVIGVTAIVYVST----------EKAWWGGFLISSIVTFIGFIAL 213 (537)
Q Consensus 178 g~~i~~~~~~~l~~----------~~g~~~~f~i~~~~~~~~~~~~ 213 (537)
...++-.++|.+.| ..+|..+|.+-++..++++.+.
T Consensus 349 A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 349 ARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 88888777775532 2357777877776665555544
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.3e-05 Score=67.12 Aligned_cols=133 Identities=20% Similarity=0.240 Sum_probs=91.1
Q ss_pred cchHhHHHHhhhhcchhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCccchHHHHHHHHH
Q 044175 357 IPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVEVQRRNAFNQMPPKQISLFWLSFQYC 436 (537)
Q Consensus 357 ~~~~~~ii~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~ 436 (537)
...+..++..++..++.|+..+ .+.+..+..+.+++.+..... .+.+......+
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~-----------~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~ 59 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGR-----------KPVLLVGLFIFVLSTAMFALS---------------SNITVLIIARF 59 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcch-----------hHHHHHHHHHHHHHHHHHHHh---------------ccHHHHHHHHH
Confidence 3455566666666665444322 234555655656655544432 23445556678
Q ss_pred HHHHHHHHHhhhhHHHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCccCCCCCCchhHHHH
Q 044175 437 IFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLSFGNFLSSVFVDIINAVTKRITPSKQGWLHGTDINKNNANLFY 516 (537)
Q Consensus 437 l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f 516 (537)
+.+++.....+....++.|..|++.|++..++.+....++..+++.+.+.+.+. .++...|
T Consensus 60 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------------------~~~~~~~ 120 (141)
T TIGR00880 60 LQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQF-------------------LGWRAPF 120 (141)
T ss_pred HHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcc-------------------cchHHHH
Confidence 888888888899999999999999999999999999999999999888865421 2334556
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 044175 517 WFLAILSVLNFVLYLYAA 534 (537)
Q Consensus 517 ~~~~~l~~~~~v~~~~~~ 534 (537)
++.+.+.++..+..+.+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~ 138 (141)
T TIGR00880 121 LFLAILALAAFILLAFLL 138 (141)
T ss_pred HHHHHHHHHHHHHHhhcC
Confidence 776766666665555443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.7e-05 Score=79.78 Aligned_cols=167 Identities=9% Similarity=-0.025 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHH
Q 044175 16 ACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLA 95 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~ 95 (537)
.++...+...+....++......|.++++.+|++..+.++.......+..++..+.+.+.++. +++|.+.....+..++
T Consensus 219 ~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~ig 297 (413)
T PRK15403 219 LFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLVG 297 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHHH
Confidence 455566666667777777777888899999999999999988878888888777777766543 4545544444444445
Q ss_pred HHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHH
Q 044175 96 LVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTT 175 (537)
Q Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 175 (537)
..++....... .+.....+++.++.++|.+...|+.....-++.+ .+ ++++.+......
T Consensus 298 ~~l~~~~~~~~--------------~~~~~~~~~~~~l~~~G~~~~~p~~~~~al~~~~-~~------~G~a~a~~~~~~ 356 (413)
T PRK15403 298 LALLIVGNLLW--------------PHVWLWSVLGTSLYAFGIGLIFPTLFRFTLFSNN-LP------KGTVSASLNMVI 356 (413)
T ss_pred HHHHHHHHHHc--------------cccHHHHHHHHHHHHHHHHHHhHHHHHHHhccCC-CC------CcHHHHHHHHHH
Confidence 44443321000 1133345677888899999988888753322221 12 355555555555
Q ss_pred HHHHHHHHHHHhhhcccccchHHHHHHHHH
Q 044175 176 TLAAVIGVTAIVYVSTEKAWWGGFLISSIV 205 (537)
Q Consensus 176 ~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~ 205 (537)
..+...++.+.+++.++ +-...|.....+
T Consensus 357 ~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~ 385 (413)
T PRK15403 357 LMVMAVSVEIGRWLWFN-GGRLPFHLLAVV 385 (413)
T ss_pred HHHHHHHHHHHHHHHHc-CCchHHHHHHHH
Confidence 66667777777877654 445555544433
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.6e-05 Score=75.98 Aligned_cols=146 Identities=17% Similarity=0.190 Sum_probs=107.4
Q ss_pred HHHHHHhhhhcCCch--hhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 044175 36 ISMVLYFKNEMHFNL--AGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDC 113 (537)
Q Consensus 36 ~~~~~yl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 113 (537)
...+.+. .+++.+. ...++..+.+.+...++.++.|.++||+ |||+.+..+.....++.++..+...
T Consensus 23 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~--------- 91 (338)
T COG0477 23 PALPLLL-STLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN--------- 91 (338)
T ss_pred HHHHHHH-HHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc---------
Confidence 3344443 4445444 4788999999999999999999999996 9998888888775666555555531
Q ss_pred CCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHH-HHHHHHHHHHHHHhhhccc
Q 044175 114 GKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLL-TTTLAAVIGVTAIVYVSTE 192 (537)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~i~~~~~~~l~~~ 192 (537)
.....+++.|+.+|++.|...+...+++.|.+++ . ..|+...+.... ...+|..++|.+++.+...
T Consensus 92 --------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 92 --------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPE-A----TERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred --------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc-h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1467888999999999999999999999999886 1 126777777666 5677888888777665543
Q ss_pred --ccchHHHHHHHHH
Q 044175 193 --KAWWGGFLISSIV 205 (537)
Q Consensus 193 --~g~~~~f~i~~~~ 205 (537)
.+|+..|.+....
T Consensus 159 ~~~~~~~~~~~~~~~ 173 (338)
T COG0477 159 LLWGWRAAFLLAALL 173 (338)
T ss_pred HhcchHHHHHHHHHH
Confidence 5788766554443
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=7.6e-05 Score=76.46 Aligned_cols=110 Identities=13% Similarity=0.206 Sum_probs=80.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchhHHHHH
Q 044175 388 TQLQRVGVGLVLSAVSMTIAGFVEVQRRNAFNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTS 467 (537)
Q Consensus 388 ~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g 467 (537)
+..+.+..|+.+..+=++.++.. .++|.+++.-++.|+..+..+.+..+|+...+|+++|.++++
T Consensus 434 GHv~v~~lgLa~~~~Rf~~~S~L---------------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~ 498 (618)
T KOG3762|consen 434 GHVNVMYLGLACNVGRFLYYSYL---------------QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQG 498 (618)
T ss_pred cccceeeehhhHHHHHHHHHHHh---------------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHH
Confidence 34455667777777777766664 356778888899999999999999999999999999999999
Q ss_pred HHHH-HHHHHHHHHHHHHHHhhhhhccCCCCCCCCccCCCCCCchhHHHHHHHHHHHHHHHHHHh
Q 044175 468 FTFL-SLSFGNFLSSVFVDIINAVTKRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYL 531 (537)
Q Consensus 468 ~~~~-~~~~g~~~~~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~~~~~l~~~~~v~~~ 531 (537)
+... ...+|..+|..+.+.+....+ ...+|..++..+++.++++.
T Consensus 499 l~~g~f~GlG~g~GslIGG~~v~~fg-------------------~~ttf~~~giAcl~~l~~~~ 544 (618)
T KOG3762|consen 499 LLQGIFHGLGKGLGSLIGGFVVERFG-------------------ARTTFRIFGIACLVTLALFI 544 (618)
T ss_pred HHHHHhcccCcchhhhhhhhhheeeh-------------------hHHHHHHHHHHHHHHHHHHH
Confidence 9887 456777888877776553221 13356666666666655443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.1e-05 Score=85.38 Aligned_cols=152 Identities=9% Similarity=-0.001 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCch----hhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHH-------HHHHH
Q 044175 21 FVLSSLENMGFIANAISMVLYFKNEMHFNL----AGASNTLTNLMGSTFLLCLVGGFISDTFLSRFAT-------CLIFG 89 (537)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~-------~~~~~ 89 (537)
++...+....+......++.|.++..+.+. -...++.+...+...+..|+.|++.||. |||+. +.+|.
T Consensus 275 ~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl-~~r~~~~~~~~k~~~G~ 353 (489)
T PRK10207 275 MLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHL-GSKGKDLSMPMKFTLGM 353 (489)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHH-hhCCCCCCcHHHHHHHH
Confidence 333555566666666777788765322211 1234455555566778888899999995 99974 77888
Q ss_pred HHHHHHHHHHHHHhh-ccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHH
Q 044175 90 TLEVLALVMITVQAY-SEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYF 168 (537)
Q Consensus 90 ~~~~i~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 168 (537)
++..++.+.++.... ..... ...+.+++....+++|+|++...|....++.+..|++. ++.++
T Consensus 354 ~l~~~~~~~~~~~~~~~~~~~----------~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~------~g~~~ 417 (489)
T PRK10207 354 FLCSLGFLTAAAAGMWFADAQ----------GLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHL------MGFIL 417 (489)
T ss_pred HHHHHHHHHHHHHHHhhcCCC----------CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHH------HHHHH
Confidence 887777655432210 00000 01256777788899999999999999999999999777 88999
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 044175 169 NYFLLTTTLAAVIGVTAIVYV 189 (537)
Q Consensus 169 ~~~~~~~~~g~~i~~~~~~~l 189 (537)
+.++...++|..++..++...
T Consensus 418 g~~~l~~~ig~~lg~~l~~~~ 438 (489)
T PRK10207 418 GMWFLTQAAAFLLGGYVATFT 438 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999988899999888777654
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00079 Score=68.17 Aligned_cols=154 Identities=10% Similarity=0.046 Sum_probs=100.4
Q ss_pred HHHHHHhhhh-cCCchhhHH-HHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 044175 36 ISMVLYFKNE-MHFNLAGAS-NTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDC 113 (537)
Q Consensus 36 ~~~~~yl~~~-l~~~~~~~~-~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 113 (537)
+++..|+.+. .|++..|.. -+.-+..-.+....++...+.|. +|.|++++++.+...+...++....
T Consensus 24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~-l~Ykpviil~~~~~i~t~~lll~~~---------- 92 (412)
T PF01770_consen 24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDY-LRYKPVIILQALSYIITWLLLLFGT---------- 92 (412)
T ss_pred ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHC----------
Confidence 5788899886 899999885 44445666777788889999999 5999999999888787777766653
Q ss_pred CCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcc--
Q 044175 114 GKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVST-- 191 (537)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~-- 191 (537)
+...+-+.-+.-|++.+. ..+..+++=-..|+++ -.++.++...+.-+|-.++..++=.+..
T Consensus 93 ---------sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~------yq~vts~~raa~l~g~~~s~~lgQllvs~~ 156 (412)
T PF01770_consen 93 ---------SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEH------YQKVTSYTRAATLVGRFISSLLGQLLVSFG 156 (412)
T ss_pred ---------cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 667777777887777655 2333444433333322 2344555554555555555554443332
Q ss_pred cccchHHHHHHHHHHHHHHHHHHhc
Q 044175 192 EKAWWGGFLISSIVTFIGFIALVIG 216 (537)
Q Consensus 192 ~~g~~~~f~i~~~~~~~~~~~~~~~ 216 (537)
..++.....+......++++..++.
T Consensus 157 ~~sy~~L~~isl~~~~~a~~~~~fL 181 (412)
T PF01770_consen 157 GVSYFQLNYISLASVSLALLIALFL 181 (412)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 3456667777776666665554443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.8e-05 Score=81.66 Aligned_cols=145 Identities=17% Similarity=0.037 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHHHHhhh----h-----cCCchhhHHHHHHHHHHHHHHHhhHh----HHHhhhccchhHHHHHHHHH
Q 044175 25 SLENMGFIANAISMVLYFKN----E-----MHFNLAGASNTLTNLMGSTFLLCLVG----GFISDTFLSRFATCLIFGTL 91 (537)
Q Consensus 25 ~~~~~~~~~~~~~~~~yl~~----~-----l~~~~~~~~~~~~~~~~~~~~~~~~~----G~laD~~~Gr~~~~~~~~~~ 91 (537)
+.....|+.+..-++.++.. + .|+. ...++..+...+...+..++. +++.||+ +..+.+.+|.++
T Consensus 282 ~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~-i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~~l 359 (500)
T PRK09584 282 MLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIA-VEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGMVL 359 (500)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHhccccccceE-ECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHHHH
Confidence 34455566655555555432 1 1211 124455555555555666666 6667773 777889999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHH
Q 044175 92 EVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYF 171 (537)
Q Consensus 92 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 171 (537)
.+++.+.+.......+ +++ ..+.+++.+..+++++|++...|+..+++.+..|++. |++.++.+
T Consensus 360 ~~l~f~~l~~~~~~~~----~~~------~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~------rg~~~g~~ 423 (500)
T PRK09584 360 CSGAFLVLPLGAKFAN----DAG------IVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL------MGFIMGSW 423 (500)
T ss_pred HHHHHHHHHHHHHhcC----CCC------ccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH------HHHHHHHH
Confidence 9999888776642111 000 1245688889999999999999999999999999877 99999998
Q ss_pred HHHHHHHHHHHHHHHh
Q 044175 172 LLTTTLAAVIGVTAIV 187 (537)
Q Consensus 172 ~~~~~~g~~i~~~~~~ 187 (537)
+.+..+|+.++..+.+
T Consensus 424 ~l~~a~g~~~~g~~~~ 439 (500)
T PRK09584 424 FLTTAGAALIAGYVAN 439 (500)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8777777777766654
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.4e-05 Score=59.75 Aligned_cols=70 Identities=14% Similarity=0.050 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHH
Q 044175 21 FVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLE 92 (537)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~ 92 (537)
-...++...+.-.+.++++.|++ +.|++..++|.+.++..+...+++++.|+++||+ ||+|.++....++
T Consensus 6 k~~yf~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 6 KAFYFFYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHHH
Confidence 34445555555667788999987 5999999999999999999999999999999995 9999888776554
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0021 Score=65.15 Aligned_cols=131 Identities=15% Similarity=0.136 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHH
Q 044175 54 SNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCL 133 (537)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 133 (537)
+.++.+-.+...+.-+..-+..+|+ .-+.=+..+.++..+|.++.+++. +.+.-+++.++
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v-~y~~Ri~~~~~l~~~g~l~va~~~-------------------~v~~~l~Gv~l 121 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRV-PYWIRILICVALSAAGMLLVAFSP-------------------SVWVRLLGVVL 121 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhc-cchHHHHHHHHHHHHHHhheeecc-------------------chhHHHHHHHH
Confidence 4466666777888888888999994 655445556667777877777653 56677788889
Q ss_pred HHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcc-cccchHHHHHHHHHHHHHHHH
Q 044175 134 YALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVST-EKAWWGGFLISSIVTFIGFIA 212 (537)
Q Consensus 134 ~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~-~~g~~~~f~i~~~~~~~~~~~ 212 (537)
.+++.|......-++.+ .+++. ..+.+..+...++++|+..-..++. ..+-|..+.+...+.++..+.
T Consensus 122 as~ssg~GE~tfL~lt~-~y~~~----------~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~ 190 (402)
T PF02487_consen 122 ASLSSGLGEVTFLSLTH-FYGKS----------SLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLS 190 (402)
T ss_pred HhhhhhhhHHHHHHHHH-hcCcc----------ccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHH
Confidence 99999998888887755 44421 2333333444555555544434444 123455666655554434433
Q ss_pred HHh
Q 044175 213 LVI 215 (537)
Q Consensus 213 ~~~ 215 (537)
+++
T Consensus 191 ~f~ 193 (402)
T PF02487_consen 191 YFF 193 (402)
T ss_pred HHH
Confidence 333
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0061 Score=63.56 Aligned_cols=162 Identities=15% Similarity=0.081 Sum_probs=99.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-----chhhHHHHHHHHHHHHHHH-hhHhHHHhhhccchhHHHHH
Q 044175 14 FRACGFIFVLSSLENMGFIANAISMVLYFKNEMHF-----NLAGASNTLTNLMGSTFLL-CLVGGFISDTFLSRFATCLI 87 (537)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~-----~~~~~~~~~~~~~~~~~~~-~~~~G~laD~~~Gr~~~~~~ 87 (537)
+|.+....+.-+|-.+.|+.+. =++|.+.. +.....++.+...+...+. .++-+++++|+ +|++++.+
T Consensus 6 ~~k~~~~~l~fF~il~~Y~iLR-----~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~~ 79 (472)
T TIGR00769 6 LKKFLPLFLMFFCILFNYTILR-----DTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFYT 79 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----hhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHHH
Confidence 4566667777777777776554 24556655 3345677777665655555 88899999995 99999999
Q ss_pred HHHHHHHHHHHHHHHhh-ccccCCCCC--CC--CCccCC----------chhHHHHHHHHHHHHhcccccc-cchhhccc
Q 044175 88 FGTLEVLALVMITVQAY-SEKLHPPDC--GK--SSCVKG----------GIAAYFYASLCLYALGSGGVRG-ALPALGAG 151 (537)
Q Consensus 88 ~~~~~~i~~~l~~~~~~-~~~~~~~~~--~~--~~~~~~----------~~~~~~~~~~~l~g~g~g~~~~-~~~~~~~~ 151 (537)
....+.+-..+.++.-. .++..+|+. .+ +..+.. .....+++. ..+=.....+ .-..+.+|
T Consensus 80 ~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~---~elw~~~vvS~lFW~fand 156 (472)
T TIGR00769 80 VISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVM---AELWGSVVLSLLFWGFANQ 156 (472)
T ss_pred HHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 87777766665554321 122222211 00 000000 011122221 1121222233 55788999
Q ss_pred CCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 044175 152 QFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVS 190 (537)
Q Consensus 152 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~ 190 (537)
.+..++ -.|.++++....|+|..+++.+..++.
T Consensus 157 i~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 157 ITTIDE------AKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred cCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998766 678999999999999999998888876
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.6e-05 Score=83.88 Aligned_cols=143 Identities=8% Similarity=-0.160 Sum_probs=110.6
Q ss_pred hhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCc
Q 044175 43 KNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGG 122 (537)
Q Consensus 43 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 122 (537)
++.+|+++.+.|.+.....++..++..+.+++.+| ++.|+++.++.++.+++...........+.. .| ..
T Consensus 280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~-~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~---~g------i~ 349 (468)
T TIGR00788 280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKT-FPYRLLFGVTTLLYTLSSLFDLILVKRWNLA---FG------IS 349 (468)
T ss_pred cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHhCceeeeeccccc---cC------CC
Confidence 45799999999999999999999999999999999 4999999999999888876543211000000 00 01
Q ss_pred hhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccccc-----chH
Q 044175 123 IAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVSTEKA-----WWG 197 (537)
Q Consensus 123 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g-----~~~ 197 (537)
+...+...-++.+++.+........++.+..|++. +++.+++.....++|..+++.+++++.+..| ++.
T Consensus 350 ~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~ 423 (468)
T TIGR00788 350 DEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNN 423 (468)
T ss_pred CeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc
Confidence 22344455678888888888888999999999888 8999999998899999999999999987766 554
Q ss_pred HHHH
Q 044175 198 GFLI 201 (537)
Q Consensus 198 ~f~i 201 (537)
.+..
T Consensus 424 ~~~~ 427 (468)
T TIGR00788 424 LWLL 427 (468)
T ss_pred hHHH
Confidence 4443
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00015 Score=75.78 Aligned_cols=205 Identities=11% Similarity=-0.001 Sum_probs=137.7
Q ss_pred hcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cCCchh------h----HHHHHHHHHHHHHHHhhHhHHHhhh
Q 044175 9 KQKGGFRACGFIFVLSSLENMGFIANAISMVLYFKNE-MHFNLA------G----ASNTLTNLMGSTFLLCLVGGFISDT 77 (537)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-l~~~~~------~----~~~~~~~~~~~~~~~~~~~G~laD~ 77 (537)
..|+.||.++.+++.+++..++++....+.+.|+.++ +|-++. + ..+....+.+...+..++--++.+|
T Consensus 252 ~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~ 331 (477)
T TIGR01301 252 AFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRG 331 (477)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788999999999999999999999999998753 443221 1 1344445566666777778888999
Q ss_pred ccch-hHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCC-Cc-cCCchhHHHHHHHHHHHHhcccccccchhhcccCCC
Q 044175 78 FLSR-FATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKS-SC-VKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFD 154 (537)
Q Consensus 78 ~~Gr-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~ 154 (537)
+ |+ |++..++.++.+++.....+....++-..+..+++ .. ++.......++...+.|+..+.....-.+++++..+
T Consensus 332 ~-g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~ 410 (477)
T TIGR01301 332 W-GAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSS 410 (477)
T ss_pred h-ccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHcc
Confidence 5 95 67778888888888877765432110000000000 00 001123566677788999999999999999999988
Q ss_pred CCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccccc--chHHHHHHHHHHHHHHHHHHhccc
Q 044175 155 EKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVSTEKA--WWGGFLISSIVTFIGFIALVIGKP 218 (537)
Q Consensus 155 ~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g--~~~~f~i~~~~~~~~~~~~~~~~~ 218 (537)
++..+ .+..++.++.++.+...+..+..|.+.+..| -...+.++++..+++.+..++..|
T Consensus 411 ~~~~~----~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~ 472 (477)
T TIGR01301 411 NLGAG----QGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLP 472 (477)
T ss_pred ccCCC----CcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCC
Confidence 54311 5888999998888888888776666443333 455777788777777666555444
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.01 E-value=5.2e-06 Score=83.47 Aligned_cols=141 Identities=14% Similarity=0.212 Sum_probs=109.9
Q ss_pred CCcccccchHhHHHHhhhhcchhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCccchHHH
Q 044175 351 TPSIPVIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVEVQRRNAFNQMPPKQISLFW 430 (537)
Q Consensus 351 ~~~~~~~~~~~~ii~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 430 (537)
.+.++..-.+.-.+..|++..+.++. ++...+.+|..+-.++++..++. .+.|.
T Consensus 70 ~Gll~~vf~v~~~i~sPl~gyLadry-----------NR~~v~~vG~~iW~~Av~~~~fs---------------~~Fwq 123 (493)
T KOG1330|consen 70 LGLLQTVFIVVFMIASPLFGYLADRY-----------NRKRVIAVGIFIWTLAVFASGFS---------------NHFWQ 123 (493)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhhc-----------CcceEEeeHHHHHHHHHHHHHHH---------------HHHHH
Confidence 35566666677778889988865443 33355778888888888877774 35677
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCccCCCCCCc
Q 044175 431 LSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLSFGNFLSSVFVDIINAVTKRITPSKQGWLHGTDINKN 510 (537)
Q Consensus 431 l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~ 510 (537)
+++.-.+.|+||....|...+++.+.+|++.|++..+++++...+|+.+|......+...+ ..|.-
T Consensus 124 ~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~-------~~Wr~------- 189 (493)
T KOG1330|consen 124 VLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT-------FWWRW------- 189 (493)
T ss_pred HHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc-------cceEE-------
Confidence 7888999999999999999999999999999999999999999999999988777665332 12544
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcc
Q 044175 511 NANLFYWFLAILSVLNFVLYLYAAA 535 (537)
Q Consensus 511 ~~~~~f~~~~~l~~~~~v~~~~~~~ 535 (537)
.|+..++++++..++.+++.+
T Consensus 190 ----af~~~avl~vi~~~L~~~f~~ 210 (493)
T KOG1330|consen 190 ----AFRGSAVLGVIVGLLVFLFVR 210 (493)
T ss_pred ----EEEeehHHHHHHHHHHHhhcc
Confidence 488888888888777666543
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00016 Score=71.91 Aligned_cols=154 Identities=13% Similarity=0.053 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHH
Q 044175 18 GFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALV 97 (537)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~ 97 (537)
+.-.+..++---.--++..+++.|+.+..|.+..+++..++.+..+..++..++-++-.|+ -..|.+.+..+...+-++
T Consensus 239 ~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~ill~~ 317 (422)
T COG0738 239 RLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAILLLL 317 (422)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHH
Confidence 3344444444444455668899999888999999999999999999999999999999994 999999888766666555
Q ss_pred HHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHH
Q 044175 98 MITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTL 177 (537)
Q Consensus 98 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 177 (537)
...+.. +. .-+.+.++.|+..+.+.|++.+...+..+++.+ .++.. -.+.-+
T Consensus 318 ~~~l~~-------------------g~-v~~~~l~~ig~F~simfPTIfslal~~l~~~ts-----~~s~~---l~maiv 369 (422)
T COG0738 318 AVALIG-------------------GV-VALYALFLIGLFNSIMFPTIFSLALKNLGEHTS-----VGSGL---LVMAIV 369 (422)
T ss_pred HHHHhc-------------------Ch-HHHHHHHHHHHHhHHHHHHHHHHHHhccCcccc-----cccee---eeehee
Confidence 555553 32 334456788999999999999999999985442 33332 224568
Q ss_pred HHHHHHHHHhhhcccccchHHHH
Q 044175 178 AAVIGVTAIVYVSTEKAWWGGFL 200 (537)
Q Consensus 178 g~~i~~~~~~~l~~~~g~~~~f~ 200 (537)
|+++-|.+-|++.+..|-...+.
T Consensus 370 GGAiiP~l~G~i~d~~g~~~~~~ 392 (422)
T COG0738 370 GGAIIPPLQGVIADMFGIQLTFL 392 (422)
T ss_pred cchHHHHHHHHHHHhhhhHHHHH
Confidence 99999999999999988777665
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.1e-05 Score=79.66 Aligned_cols=157 Identities=15% Similarity=0.000 Sum_probs=114.4
Q ss_pred HHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccc--hhHHHHHHHHHHHHHHHHHHHHhhccccC
Q 044175 32 IANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLS--RFATCLIFGTLEVLALVMITVQAYSEKLH 109 (537)
Q Consensus 32 ~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G--r~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 109 (537)
-..-+.+++++.+.+.-+.-+.|....-..+.+.+++.+.|.++||+ + |...-..+++...+.+....++.
T Consensus 287 afLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~-~~~~wl~~~~gl~~~G~~~~~iP~~~------ 359 (464)
T KOG3764|consen 287 AFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKY-PHLRWLLSLGGLATVGVSSGPIPFAT------ 359 (464)
T ss_pred HHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhc-CchhHHHHHHHHHHHHHHhchhHhhh------
Confidence 33446677888888885555888888888999999999999999996 9 54444444444444444444443
Q ss_pred CCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 044175 110 PPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYV 189 (537)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l 189 (537)
+...+++-++..+++.+...+...+...+..+.+..+.-.--++..++...+..+|..+||.++|.+
T Consensus 360 -------------~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~i 426 (464)
T KOG3764|consen 360 -------------SIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSL 426 (464)
T ss_pred -------------hHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchh
Confidence 5667888888888888888888877777776654322111257788888889999999999999999
Q ss_pred cccccchHHHHHHHHHHHH
Q 044175 190 STEKAWWGGFLISSIVTFI 208 (537)
Q Consensus 190 ~~~~g~~~~f~i~~~~~~~ 208 (537)
.+..|++|.-.+-++...+
T Consensus 427 v~~iGF~wl~~iig~~n~i 445 (464)
T KOG3764|consen 427 VEAIGFEWLMTIIGILNLI 445 (464)
T ss_pred eeehhHHHHHHHHHHHHHH
Confidence 9999998876554444433
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=3.7e-05 Score=78.74 Aligned_cols=172 Identities=8% Similarity=-0.058 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHH
Q 044175 21 FVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMIT 100 (537)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~ 100 (537)
++..++-.++.--+.+++--++ ++++-.+.--|.....-..+-.+.-++.++|-.| +|+-+++.+++....+=.+...
T Consensus 377 f~~av~mG~g~~lv~tFLfWHl-ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~k-iGHv~v~~lgLa~~~~Rf~~~S 454 (618)
T KOG3762|consen 377 FFVAVVMGAGVGLVFTFLFWHL-EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEK-IGHVNVMYLGLACNVGRFLYYS 454 (618)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-hhcCCcceeeeehhhhhccchHHHHHHHHHHHHH-hcccceeeehhhHHHHHHHHHH
Confidence 3334444444444445553344 4556555555544455566677788889999999 5999999999888888777777
Q ss_pred HHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHH-HHHHHH
Q 044175 101 VQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLL-TTTLAA 179 (537)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~ 179 (537)
.. +++|+.+..-+++|+..+.++.++.+|+++..|++- ++++-++... .-.+|-
T Consensus 455 ~L-------------------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g~f~GlG~ 509 (618)
T KOG3762|consen 455 YL-------------------QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQGIFHGLGK 509 (618)
T ss_pred Hh-------------------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHHHhcccCc
Confidence 76 378888888999999999999999999999999887 7777777653 346888
Q ss_pred HHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHhcccc
Q 044175 180 VIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPF 219 (537)
Q Consensus 180 ~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~ 219 (537)
.+|.+++|.+.+.+|-+..|.+.++.+++.++.+....+.
T Consensus 510 g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~~ 549 (618)
T KOG3762|consen 510 GLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQLL 549 (618)
T ss_pred chhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 8899999999999998999998888887777766554433
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00015 Score=67.73 Aligned_cols=151 Identities=14% Similarity=0.136 Sum_probs=89.7
Q ss_pred HhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCccC
Q 044175 41 YFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVK 120 (537)
Q Consensus 41 yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 120 (537)
|+-+..|+...+.+.+..+......++..+.|-|+||- |||+..+.-++.+. +..+.-+
T Consensus 62 yLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKracvtycitYi----LsCiTKh---------------- 120 (454)
T KOG4332|consen 62 YLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCITYI----LSCITKH---------------- 120 (454)
T ss_pred eeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-ccccceeeehHHHH----HHHHhhc----------------
Confidence 34456788899999988888888888889999999995 99997665555444 4443321
Q ss_pred CchhHHHHHHHHHHHHhcccccccchh-hcccCCCCCChhhhhhhhhHHHHH-HHHHHHHHHHHHHHHhhhcccc--cch
Q 044175 121 GGIAAYFYASLCLYALGSGGVRGALPA-LGAGQFDEKDPKGAKALASYFNYF-LLTTTLAAVIGVTAIVYVSTEK--AWW 196 (537)
Q Consensus 121 ~~~~~~~~~~~~l~g~g~g~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~i~~~~~~~l~~~~--g~~ 196 (537)
..++-.++++|++-|++.+......-+ +++|.-.++.=++.. ...-++-. .....+-++++.+.+-.+.+.. |--
T Consensus 121 SpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~FeqqW-ls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPV 199 (454)
T KOG4332|consen 121 SPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGFEQQW-LSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPV 199 (454)
T ss_pred CCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCChHhh-hhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCC
Confidence 135567889999999998887666654 366665433322111 11111110 0112233344444444444433 445
Q ss_pred HHHHHHHHHHHHHHHHH
Q 044175 197 GGFLISSIVTFIGFIAL 213 (537)
Q Consensus 197 ~~f~i~~~~~~~~~~~~ 213 (537)
.+|-.++.+..++..+.
T Consensus 200 APFdAAacfLaigmAvi 216 (454)
T KOG4332|consen 200 APFDAAACFLAIGMAVI 216 (454)
T ss_pred CchHHHHHHHHHHHHHH
Confidence 56766665555554443
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.021 Score=58.91 Aligned_cols=59 Identities=15% Similarity=0.033 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 044175 427 SLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLSFGNFLSSVFVD 485 (537)
Q Consensus 427 ~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~~~~~l~~ 485 (537)
+...++.+.++.=+|.-..-.+..-+.-|..|++.||...|+-+..+++...+...++-
T Consensus 355 s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~i 413 (432)
T PF06963_consen 355 SAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTI 413 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555556666666666666677777888999999999999999999999888766543
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00015 Score=76.08 Aligned_cols=162 Identities=12% Similarity=0.078 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhc---cchhHHHHHHHHHH
Q 044175 16 ACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTF---LSRFATCLIFGTLE 92 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~Gr~~~~~~~~~~~ 92 (537)
.+|...+..++.-...|+...+.+.|+++..|++..+++.+...+.++..++.+++|+++||. +.+|..+.....+.
T Consensus 274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~ 353 (495)
T KOG2533|consen 274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLY 353 (495)
T ss_pred hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 568899999999999999999999999986779999999999999999999999999999992 15666655555444
Q ss_pred HH-HHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHH
Q 044175 93 VL-ALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYF 171 (537)
Q Consensus 93 ~i-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 171 (537)
.+ |.+.+.... .......+.+....+.+...++...-..+....+. ++.+..+..
T Consensus 354 ~~~g~~~l~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~-----k~~~~~~~~ 409 (495)
T KOG2533|consen 354 AIIGAISLLAAA-------------------VLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNT-----KALTTVSAI 409 (495)
T ss_pred HHHHHHHHHhhc-------------------cchHHhHHHHhcchhhHHHHHHHHhhccccccchH-----HhHHHHhhh
Confidence 33 323333321 11222222222223333333444444455443332 144444444
Q ss_pred HHHHHH-HHHHHHHHHhhhcccccchHHHHH
Q 044175 172 LLTTTL-AAVIGVTAIVYVSTEKAWWGGFLI 201 (537)
Q Consensus 172 ~~~~~~-g~~i~~~~~~~l~~~~g~~~~f~i 201 (537)
....+. |.+.+++..+.....++|...|..
T Consensus 410 i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~ 440 (495)
T KOG2533|consen 410 IDGTGSAGAISGQLFRSLDAPRYGWGAVFYM 440 (495)
T ss_pred hcchhHHHHhhhhhcccccCcchhhhhHHHH
Confidence 444444 444444445555555788888844
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.001 Score=71.15 Aligned_cols=144 Identities=13% Similarity=-0.018 Sum_probs=83.4
Q ss_pred CcchHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHH
Q 044175 13 GFRACGFIFVLSSLENM-GFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTL 91 (537)
Q Consensus 13 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~ 91 (537)
.+|+....+....+..+ ++..+..+.+..+ +..|.+... ............++..++.++.||+ |||+.++.+...
T Consensus 292 ~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if-~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~~ 368 (513)
T KOG0254|consen 292 VRKRLIIGLLLQLFQQLTGINYVFYYSTTIF-KSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAAG 368 (513)
T ss_pred hHHHHHHHHHHHHHHHHhCCceEEeehHHHH-HhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHHH
Confidence 44544444444444444 4444444444444 455665443 5555556777888888889999995 999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHH-HHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHH
Q 044175 92 EVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYAS-LCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNY 170 (537)
Q Consensus 92 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 170 (537)
..++.++++..........+ +. .....+.++. .+.......+..|....+.+|.+|.+- |+++.++
T Consensus 369 m~~~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~------r~~~~s~ 435 (513)
T KOG0254|consen 369 MSICLVILAVVGVFALYYPN------SS-KGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRL------RSKGASL 435 (513)
T ss_pred HHHHHHHHHHHHHHhccCCC------cc-cchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhH------HhhhHHH
Confidence 99999988866432211000 00 0011112222 222222233334555567899999877 6666666
Q ss_pred HH
Q 044175 171 FL 172 (537)
Q Consensus 171 ~~ 172 (537)
..
T Consensus 436 ~~ 437 (513)
T KOG0254|consen 436 AV 437 (513)
T ss_pred HH
Confidence 43
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=97.69 E-value=2.5e-07 Score=97.09 Aligned_cols=185 Identities=17% Similarity=0.040 Sum_probs=109.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHH
Q 044175 15 RACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVL 94 (537)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i 94 (537)
+.+...+....+..+..+....+...++.+..+.+.. -.......+...++.+++.++.||+ |||++++.+..+.++
T Consensus 252 ~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~ 328 (451)
T PF00083_consen 252 KRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAI 328 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-ccccccccccccccc
Confidence 3444455555555454444444444455556676666 2222334566667888888999995 999999999988888
Q ss_pred HHHHHH-HHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcc-cccccchhhcccCCCCCChhhhhhhhhHHHHHH
Q 044175 95 ALVMIT-VQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSG-GVRGALPALGAGQFDEKDPKGAKALASYFNYFL 172 (537)
Q Consensus 95 ~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 172 (537)
+.+.++ .....++. ++ ..+... ++...+...+.+ +..+....+.+|.+|.+. |+++.++.+
T Consensus 329 ~~~~~~~~~~~~~~~-------~~---~~~~~~-i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~------R~~~~~~~~ 391 (451)
T PF00083_consen 329 CSLILGIIFFLGVSS-------SS---WWSILS-IVFLALFFAFFSLGWGPLPWIYTAELFPTKV------RSTGIGLSY 391 (451)
T ss_pred ccccccccccccccc-------cc---cccccc-ceeeeeccccccccccccccccccccccccc------ccccccccc
Confidence 777665 11100000 00 001111 112222212222 334666688899999988 899999988
Q ss_pred HHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHhcccc
Q 044175 173 LTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPF 219 (537)
Q Consensus 173 ~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~ 219 (537)
....+++.+++.+...+.+..+-...|.+.+.++++..+..++..|+
T Consensus 392 ~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpE 438 (451)
T PF00083_consen 392 AVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPE 438 (451)
T ss_pred ccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEee
Confidence 88888888888888877766662334555444444444444444443
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0011 Score=72.47 Aligned_cols=129 Identities=9% Similarity=-0.008 Sum_probs=90.1
Q ss_pred CCcccccchHhHHHHhhhhcchhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH--hhhh---------c
Q 044175 351 TPSIPVIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVEVQR--RNAF---------N 419 (537)
Q Consensus 351 ~~~~~~~~~~~~ii~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~--~~~~---------~ 419 (537)
.+.+.+...+...+..+++..+.++. ++.+.+.+|.++++++.++.++.+... +... .
T Consensus 70 ~G~i~s~~~i~~~~~~i~v~~~~~r~-----------~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~ 138 (633)
T TIGR00805 70 SGLINGSYEIGNLLLIIFVSYFGTKL-----------HRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLS 138 (633)
T ss_pred ceeeeehhhHHHHHHHHHHHHhhccc-----------CcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccc
Confidence 34555666667777766666644333 233457778888888877776543110 0000 0
Q ss_pred ------c--C----------------CCc-cchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchhHHHHHHHHHHHH
Q 044175 420 ------Q--M----------------PPK-QISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLS 474 (537)
Q Consensus 420 ------~--~----------------g~~-~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ 474 (537)
. + +.. ...+..++++.++.|+|++...+...+++.|.+|++.|+.+.|+++....
T Consensus 139 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~ 218 (633)
T TIGR00805 139 SANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAV 218 (633)
T ss_pred ccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHH
Confidence 0 0 000 11345566789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhh
Q 044175 475 FGNFLSSVFVDIINAV 490 (537)
Q Consensus 475 ~g~~~~~~l~~~i~~~ 490 (537)
+|..+|+.+.+.+.+.
T Consensus 219 iG~~lG~llgg~l~~~ 234 (633)
T TIGR00805 219 FGPAFGYLLGSFCLQI 234 (633)
T ss_pred hhhHHHHHHHHHHHhc
Confidence 9999999998877643
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.003 Score=67.50 Aligned_cols=150 Identities=13% Similarity=0.046 Sum_probs=101.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCch---hhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHH-HH
Q 044175 13 GFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNL---AGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCL-IF 88 (537)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~-~~ 88 (537)
++|.+...+++.++..+.||++..+.+......++-+. .+.++....+.++..++..+.|.+.-++ +|-|-.+ ++
T Consensus 308 ~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~i-r~~Kw~li~~ 386 (599)
T PF06609_consen 308 DRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKI-RHIKWQLIFG 386 (599)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHc-cchhHHHHHH
Confidence 45677777888889999999988888877666665544 2567777788888889999999999884 8766654 56
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHH
Q 044175 89 GTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYF 168 (537)
Q Consensus 89 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 168 (537)
.++..++...++... .++....+...++.|+|.|...........-..|+++ .+.+.
T Consensus 387 ~~~~ta~~Gama~~~-----------------~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~------ig~a~ 443 (599)
T PF06609_consen 387 SVLMTAFCGAMAAVR-----------------PDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDED------IGTAT 443 (599)
T ss_pred HHHHHHHHHHHHHcc-----------------CCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchH------HHHHH
Confidence 555555545554443 1233344555678888888877666665555556555 67777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 044175 169 NYFLLTTTLAAVIGVTAI 186 (537)
Q Consensus 169 ~~~~~~~~~g~~i~~~~~ 186 (537)
++....-.+|+.++..+.
T Consensus 444 gL~~s~R~~GGsIg~aIy 461 (599)
T PF06609_consen 444 GLTGSIRSIGGSIGYAIY 461 (599)
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 666555566666655443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.004 Score=64.28 Aligned_cols=84 Identities=10% Similarity=0.160 Sum_probs=68.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchhHHHHHH
Q 044175 389 QLQRVGVGLVLSAVSMTIAGFVEVQRRNAFNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSF 468 (537)
Q Consensus 389 ~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~ 468 (537)
..+.+.++.+.-++..++.++. .+...+.+.-++.|++|+... +...++++.+|++.|+++.|+
T Consensus 91 ~K~vL~l~~l~Wsl~t~L~~fa---------------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi 154 (511)
T TIGR00806 91 YKPVLVLQALSFVCVWLLLLLG---------------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAY 154 (511)
T ss_pred chHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHH
Confidence 3445666666666665555553 356777888999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 044175 469 TFLSLSFGNFLSSVFVDIIN 488 (537)
Q Consensus 469 ~~~~~~~g~~~~~~l~~~i~ 488 (537)
++....+|.++++.+.+.+.
T Consensus 155 ~~sg~~vG~~Ia~~L~qll~ 174 (511)
T TIGR00806 155 SRAAVLLGVFLSSVLGQLLV 174 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998843
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0049 Score=64.83 Aligned_cols=159 Identities=8% Similarity=-0.071 Sum_probs=111.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----cCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchh-H---
Q 044175 13 GFRACGFIFVLSSLENMGFIANAISMVLYFKNE-----MHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRF-A--- 83 (537)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-----l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~-~--- 83 (537)
+-..+..+++...+-...|....+.+..|.++. +|++ -..++..+...+...+..|+.+++=.| .+|| |
T Consensus 266 r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~-ip~~~~qslNp~~ii~l~P~~a~lw~~-l~~~~~~~s 343 (493)
T PRK15462 266 ELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYT-VPTAMFQSINAFAVMLCGVFLAWVVKE-SVAGNRTVR 343 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhccee-eCHHHHHhHhHHHHHHHHHHHHHHHHH-HhcCCCCCC
Confidence 334556666666777777777777888887664 2322 235666677777777888888888666 3432 1
Q ss_pred ---HHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhh
Q 044175 84 ---TCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKG 160 (537)
Q Consensus 84 ---~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 160 (537)
=+.+|+++..++.+.+.++....+ +.| ..+..++++..+++++|+=+..|...+++++..|++-
T Consensus 344 ~~~Kfa~g~~~~g~~f~~l~~~~~~~~----~~~------~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~--- 410 (493)
T PRK15462 344 IWGKFALGLGLMSAGFCILTLSARWSA----MYG------HSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGV--- 410 (493)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhcC----CCC------CcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHH---
Confidence 167778888888877766542111 001 1367888899999999999999999999999999887
Q ss_pred hhhhhhHHHHHHHHH-HHHHHHHHHHHhhh
Q 044175 161 AKALASYFNYFLLTT-TLAAVIGVTAIVYV 189 (537)
Q Consensus 161 ~~~r~~~~~~~~~~~-~~g~~i~~~~~~~l 189 (537)
++..++.++... .+|..++..+++..
T Consensus 411 ---~g~~mg~w~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 411 ---TGVLTGIYMLLSGAIANYLAGVIADQT 437 (493)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999987643 57777766666554
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0025 Score=49.22 Aligned_cols=73 Identities=8% Similarity=0.022 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHh
Q 044175 26 LENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQA 103 (537)
Q Consensus 26 ~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~ 103 (537)
+.||.| +.+.+.++++.++|.++.+++-+...+++.++.+...++.++. .+++.+..++++..+.++.+++..
T Consensus 6 igRFay----TplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~~ 78 (85)
T PF06779_consen 6 IGRFAY----TPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALTH 78 (85)
T ss_pred hHHHHH----HhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345554 4455677889999999999999999999999999999999994 889999999999999999988864
|
Note that many members are hypothetical proteins. |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0095 Score=52.27 Aligned_cols=106 Identities=14% Similarity=0.098 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHH
Q 044175 54 SNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCL 133 (537)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 133 (537)
..-+++......+.+++...+-++ +|.|+.+.+|.+.+.+-...... .+...++.+-++
T Consensus 40 ~~slai~Y~~~~~s~l~~P~iv~~-lg~K~sm~lg~~~y~~y~~~~~~--------------------~~~~~l~~~s~l 98 (156)
T PF05978_consen 40 YYSLAILYGSFAISCLFAPSIVNK-LGPKWSMILGSLGYAIYIASFFY--------------------PNSYTLYPASAL 98 (156)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHh--------------------hhHHHHHHHHHH
Confidence 334445566677777888899999 59999999998877644332221 145677888899
Q ss_pred HHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 044175 134 YALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAI 186 (537)
Q Consensus 134 ~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~ 186 (537)
.|+|.+..+.....++.+..++++ +++-.++++...+.+.++|.++.
T Consensus 99 ~G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~ 145 (156)
T PF05978_consen 99 LGFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFL 145 (156)
T ss_pred HhhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998876655 66777776666666666655444
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00033 Score=70.58 Aligned_cols=166 Identities=16% Similarity=0.115 Sum_probs=119.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhc---cchhHHHHHHHH-
Q 044175 15 RACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTF---LSRFATCLIFGT- 90 (537)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~Gr~~~~~~~~~- 90 (537)
+.+..+..+.+--.+++-.=..+.++|++ .+|.+-...+.+-.+.-+...+.+|+.|..+||- +||||-++....
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 45555666666666666666678888985 6899888888888888899999999999999983 698888777654
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCC-CCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHH
Q 044175 91 LEVLALVMITVQAYSEKLHPPDCGK-SSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFN 169 (537)
Q Consensus 91 ~~~i~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 169 (537)
...++.++...+. ++...=+.+ ..+++.-....++++..+.=++.-..+...-++.+|...+++. +.++.+
T Consensus 111 ~i~~~l~Lig~aa---Dig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~-----~~~Ans 182 (498)
T KOG0637|consen 111 LIAVSLFLIGYAA---DIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAK-----KTRANS 182 (498)
T ss_pred HHHHHHhhhhhHh---hhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhh-----hhccch
Confidence 4566777766663 222211122 2223445567778888888888878888899999999875541 222788
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 044175 170 YFLLTTTLAAVIGVTAIVYV 189 (537)
Q Consensus 170 ~~~~~~~~g~~i~~~~~~~l 189 (537)
++.....+|+.+|...+++.
T Consensus 183 ~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 183 VFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred hHHHHHHhcceeeeeccccc
Confidence 88888899999998888754
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00097 Score=67.38 Aligned_cols=179 Identities=11% Similarity=0.056 Sum_probs=112.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHH--------HHHHHH-HHHHHHhhHhHHHhhhccchhHHHH
Q 044175 16 ACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASN--------TLTNLM-GSTFLLCLVGGFISDTFLSRFATCL 86 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~--------~~~~~~-~~~~~~~~~~G~laD~~~Gr~~~~~ 86 (537)
.+.......+.--.++|+...+...-++ ..|+.+.+... ...+.. .....+..++.++.|+ +|||+.-+
T Consensus 305 ~Llgt~~~WFllDiafy~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~-iGRk~iq~ 382 (538)
T KOG0252|consen 305 HLLGTAGTWFLLDIAFYGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDI-IGRKYIQL 382 (538)
T ss_pred HHHHHHHHHHhhhhhhhccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeeh-hhhHHHHH
Confidence 3444445555555666666655555554 34544333222 111111 2222255566778999 59999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhh
Q 044175 87 IFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALAS 166 (537)
Q Consensus 87 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 166 (537)
-+.+++.+..+.++.... +.+ .+...+...-+.+-++.-+-.++....-+|.||.+. |+.
T Consensus 383 ~GF~~~~i~~~~~~~~y~--~~~------------~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParv------R~t 442 (538)
T KOG0252|consen 383 MGFFIMTIFFFVIAGPYN--QLE------------NTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARV------RST 442 (538)
T ss_pred hhHHHHHHHHHHHcCCcc--ccc------------ccCceeehHHHHHHHHhcCCCceeEEeehhhchHHH------hhh
Confidence 999988887777766531 110 112222222222334444444555556679999887 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc-----cccchHHHHHHHHHHHHHHHHHHhc
Q 044175 167 YFNYFLLTTTLAAVIGVTAIVYVST-----EKAWWGGFLISSIVTFIGFIALVIG 216 (537)
Q Consensus 167 ~~~~~~~~~~~g~~i~~~~~~~l~~-----~~g~~~~f~i~~~~~~~~~~~~~~~ 216 (537)
+-++...+.-+|+.++...-.++.+ ..+.+..|++.+.++.+..+..++.
T Consensus 443 ~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~ 497 (538)
T KOG0252|consen 443 CHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLI 497 (538)
T ss_pred hhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEe
Confidence 9999888888999999999899988 6788999998888877776655544
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0082 Score=64.43 Aligned_cols=172 Identities=10% Similarity=-0.016 Sum_probs=117.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CCchhh--HHHHHHHHHHHHHHHhhHhHHHhhhccchhH---------
Q 044175 16 ACGFIFVLSSLENMGFIANAISMVLYFKNEM-HFNLAG--ASNTLTNLMGSTFLLCLVGGFISDTFLSRFA--------- 83 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l-~~~~~~--~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~--------- 83 (537)
.+|.++...+|..-+-..+..++. ++.+.+ |.+.++ ....++...+.++++.+.+|+++.- .-||+
T Consensus 354 d~Wll~~~~~cg~g~gl~~~~N~~-qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~-~~~~~~~~r~prt~ 431 (591)
T PTZ00207 354 RLWCLLWSIFCCVGAHFVIIFNAR-FIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIW-SQKRRAEDRVPITI 431 (591)
T ss_pred hHHHHHHHHHHhhCchheeeecHH-HHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHH-HHhhccccccchhH
Confidence 578888877777666555544444 333566 663333 2237889999999999999999832 23332
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhh
Q 044175 84 TCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKA 163 (537)
Q Consensus 84 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 163 (537)
.+.+..+ ..++.+++.+.. ....++++-++.|++.|..++...+.++|.|. ++
T Consensus 432 ~l~~~~~-~~~~~lll~~~~-------------------p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~------ 484 (591)
T PTZ00207 432 ALFIPSV-CIITMLTLFLTL-------------------PKAALPLPYFIAAFANGFMAATIALVTRTIFA-KD------ 484 (591)
T ss_pred HHHHHHH-HHHHHHHHHHHC-------------------CccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cc------
Confidence 2333333 666666666652 11578899999999999999999999999999 66
Q ss_pred hhhHHHHHHHHHHHHHHHH-HHHHhhhcc-------------cccchHHHHHHHHHHHHHHHHHHhc
Q 044175 164 LASYFNYFLLTTTLAAVIG-VTAIVYVST-------------EKAWWGGFLISSIVTFIGFIALVIG 216 (537)
Q Consensus 164 r~~~~~~~~~~~~~g~~i~-~~~~~~l~~-------------~~g~~~~f~i~~~~~~~~~~~~~~~ 216 (537)
-++.++....+..+|+.+- -.+.|.+-+ ...++..|++.+.+++++.+.....
T Consensus 485 ~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l 551 (591)
T PTZ00207 485 PAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYV 551 (591)
T ss_pred hHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhhe
Confidence 6888888887888887764 334454421 1237788888777776666654443
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.02 Score=56.88 Aligned_cols=151 Identities=15% Similarity=0.104 Sum_probs=105.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccc-hhHHHHHHHHHHH
Q 044175 16 ACGFIFVLSSLENMGFIANAISMVLYF-KNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLS-RFATCLIFGTLEV 93 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~yl-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G-r~~~~~~~~~~~~ 93 (537)
+.+.++....+-..-.|...-+...++ .+.+|+++.|.|-+.+.-.+...+.+..-....||..| -+-.+..++.++.
T Consensus 261 ~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~v 340 (451)
T KOG2615|consen 261 SVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIV 340 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHH
Confidence 344444444333333344444444444 45799999999988877777666666666667777522 3334444544444
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHH
Q 044175 94 LALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLL 173 (537)
Q Consensus 94 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 173 (537)
-..++...+. ....++++..+-.+..+...++...++....|..+ |+...+....
T Consensus 341 P~~llls~~~-------------------~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~q------rG~~~Gi~~S 395 (451)
T KOG2615|consen 341 PAFLLLSLAR-------------------TPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQ------RGTLNGIFRS 395 (451)
T ss_pred HHHHHHhccc-------------------cchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCccc------chHHHHHHHH
Confidence 4555555543 45678888888899999999999999999988777 9999999999
Q ss_pred HHHHHHHHHHHHHhhhcc
Q 044175 174 TTTLAAVIGVTAIVYVST 191 (537)
Q Consensus 174 ~~~~g~~i~~~~~~~l~~ 191 (537)
...++-++||+++|.+.+
T Consensus 396 l~alaRaiGPlv~g~i~~ 413 (451)
T KOG2615|consen 396 LGALARAIGPLVSGVIFS 413 (451)
T ss_pred HHHHHHHhhhhhhheeEE
Confidence 999999999999987653
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.83 Score=45.66 Aligned_cols=58 Identities=10% Similarity=0.061 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchhHHHHHHHHHHHHHHHHH-HHHHHHH
Q 044175 429 FWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLSFGNFL-SSVFVDI 486 (537)
Q Consensus 429 ~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~~-~~~l~~~ 486 (537)
...+..+.+.+...-.......++-++++|+...|++|.+.|...++|+-. +.....+
T Consensus 370 il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l 428 (510)
T KOG3574|consen 370 ILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWL 428 (510)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHh
Confidence 334456777777777778888999999999999999999999999988766 4433333
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.13 Score=56.41 Aligned_cols=166 Identities=13% Similarity=0.016 Sum_probs=106.5
Q ss_pred cCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhH
Q 044175 46 MHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAA 125 (537)
Q Consensus 46 l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (537)
.+...........++.....+..+.....+|-.-|+-..+..-.+...+..+.+.+... +.. +......
T Consensus 15 ~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai-~a~----------~~~~~~~ 83 (654)
T TIGR00926 15 LNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSF-GAI----------PSSGHPL 83 (654)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-ccC----------cccccch
Confidence 34444456677788899999999999999999766666666666667777776766652 110 0011123
Q ss_pred HHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccccc-chH------H
Q 044175 126 YFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVSTEKA-WWG------G 198 (537)
Q Consensus 126 ~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g-~~~------~ 198 (537)
...+..+.+.++.++..++-+.+.+++.+..+ ..++.+..+++++..+.+.+. .+++..+..... +.. .
T Consensus 84 ~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~---~~~~~~~~s~F~~fY~~iNiG-Slis~~i~~~l~~~~~~fg~~~~ 159 (654)
T TIGR00926 84 HDLLDLLGLALIALGTGGIKPCVSAFGGDQFE---ERQLSLRSRFFSFFYFAINAG-SLISTIITPILRGDVGCFGCQDC 159 (654)
T ss_pred HHHHHHHHHHHHHhhccccccCchhhhHhhcC---ccchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcccccCcc
Confidence 44556777889999999999999999987543 555667899999988888774 566666654332 321 2
Q ss_pred HHHHH-HHHHHHHHHHHhccccccccCCC
Q 044175 199 FLISS-IVTFIGFIALVIGKPFYRNQQPG 226 (537)
Q Consensus 199 f~i~~-~~~~~~~~~~~~~~~~~~~~~~~ 226 (537)
|..+. +..++.++.+......++..+++
T Consensus 160 ~~~aF~i~~i~m~ia~lvf~~g~k~y~~~ 188 (654)
T TIGR00926 160 YPLAFGVPAILMILALIVFMAGSKMYKKK 188 (654)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccccCCC
Confidence 43333 33444445555554444433443
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.12 Score=55.20 Aligned_cols=174 Identities=11% Similarity=0.023 Sum_probs=92.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHH-HHHHHHH
Q 044175 15 RACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCL-IFGTLEV 93 (537)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~-~~~~~~~ 93 (537)
+.+....++.-+..++|- ....-.+...+|-+....+.+++++..+..++..++|+++++- -|+.... ++..+..
T Consensus 17 ~~l~~~~f~sg~~~L~yE---v~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~~~~~e~~i~l~~ 92 (521)
T PRK03612 17 ALLLAAVFVCAACGLVYE---LLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAGFVAVELLLALLG 92 (521)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHH
Confidence 333334444444444443 3444445556788888899999999999999999999987552 3332211 1111111
Q ss_pred -HHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHH
Q 044175 94 -LALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFL 172 (537)
Q Consensus 94 -i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 172 (537)
++..+..... +.. ......++...++.++..|+..|....+..+... ++ .++..+..|
T Consensus 93 ~~~~~ll~~~~--~~~------------~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~------~g~~~g~ly 151 (521)
T PRK03612 93 GLSALILYAAF--AFQ------------GLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QH------LGHNVATVL 151 (521)
T ss_pred HHHHHHHHHHH--HHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc------hhhhhhhhH
Confidence 1111111111 000 0011222333445677777777776665544322 11 245566667
Q ss_pred HHHHHHHHHHHHHHhhhcc-ccc-chHHHHHHHHHHHHHHHHH
Q 044175 173 LTTTLAAVIGVTAIVYVST-EKA-WWGGFLISSIVTFIGFIAL 213 (537)
Q Consensus 173 ~~~~~g~~i~~~~~~~l~~-~~g-~~~~f~i~~~~~~~~~~~~ 213 (537)
....+|+++|.++.+++.- ..| .+..++++.+-.+++++.+
T Consensus 152 ~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~~ 194 (521)
T PRK03612 152 AADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVFL 194 (521)
T ss_pred hHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 7788899988888877543 455 3444444444334443333
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.028 Score=57.03 Aligned_cols=183 Identities=14% Similarity=0.080 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHH
Q 044175 17 CGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLAL 96 (537)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~ 96 (537)
+.++.+........+|++.+.+-.-+ ..-|++...+|.+.....+++.++..+.|.++||.=.-|+++++......++.
T Consensus 268 F~il~~~ygi~~g~F~~l~~~l~~~l-~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~ 346 (480)
T KOG2563|consen 268 FIILAICYGIGLGLFNSLSTLLNLAL-CPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGT 346 (480)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhhcc-ccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 34455555555555565555554333 34577778899999999999999999999999995234444555444444443
Q ss_pred HHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccC-CCCCChhhhhhhhhHHHHHHHHH
Q 044175 97 VMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQ-FDEKDPKGAKALASYFNYFLLTT 175 (537)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~ 175 (537)
........ . ....+.++..-.+.|...-...|.-.-+..|. +|..| +...+......
T Consensus 347 ~~l~~~t~--~-------------~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E-------~tSsGll~~~g 404 (480)
T KOG2563|consen 347 LMLLTCTL--F-------------LGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAE-------GTSSGLLNLSG 404 (480)
T ss_pred HHHHHhhc--c-------------CCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCC-------cccceeEEeeh
Confidence 22221111 0 01234444555667777777888888888887 45444 23333333333
Q ss_pred HHHHHHHHHHHhhhccccc---chH-HHHHHHHHHHHHHHHHHhccccccc
Q 044175 176 TLAAVIGVTAIVYVSTEKA---WWG-GFLISSIVTFIGFIALVIGKPFYRN 222 (537)
Q Consensus 176 ~~g~~i~~~~~~~l~~~~g---~~~-~f~i~~~~~~~~~~~~~~~~~~~~~ 222 (537)
++-+.+-.++-+...+..+ |.. .-+.......+..++..+.++++++
T Consensus 405 q~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R 455 (480)
T KOG2563|consen 405 QIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRR 455 (480)
T ss_pred hHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHh
Confidence 4333444455555555444 333 2222333344444445555555544
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.1 Score=55.88 Aligned_cols=106 Identities=8% Similarity=-0.019 Sum_probs=75.4
Q ss_pred HHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhccccc
Q 044175 63 STFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVR 142 (537)
Q Consensus 63 ~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~ 142 (537)
.........+.+-|++ |||.....+..+..++.+..+..... .......+...+...+.+...
T Consensus 362 ~~~p~~~~~~~~~~~~-gR~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~ 424 (521)
T KOG0255|consen 362 VELPAYFRNGLLLPEF-GRRPPLFLSLFLAGIGLLLFGWLPDD----------------LGGWLHWILPLLGKFFIGSAF 424 (521)
T ss_pred HHhhHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHhhcc----------------chhHHHHHHHHHHHHHHHHHH
Confidence 5555556668999995 99999999999999999888876420 110122222333334444445
Q ss_pred ccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 044175 143 GALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVST 191 (537)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~ 191 (537)
.....+.+|.+|+.. |..+.+.......+|.+++|.+......
T Consensus 425 ~~~~~~~~el~pt~~------r~~~~~~~~~~~~~~~i~ap~~~~~~~~ 467 (521)
T KOG0255|consen 425 NLIFLYSAELIPTVV------RNTAVGAISAAARLGSILAPLFPLLLRQ 467 (521)
T ss_pred HHHHHHHHhhccHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556888999999877 8889998888889999999887754443
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.021 Score=59.58 Aligned_cols=125 Identities=18% Similarity=0.142 Sum_probs=104.3
Q ss_pred HHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhH-HHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCC
Q 044175 38 MVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGG-FISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKS 116 (537)
Q Consensus 38 ~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G-~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 116 (537)
...|++..++++..+.+...+.......++..+.. .+.-. +|-|+++.+|+....+...+.+++.
T Consensus 264 ~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~-l~~~~~i~lGl~~~~~~~~~~af~~------------- 329 (463)
T KOG2816|consen 264 LLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSI-LGEKRLISLGLLSEFLQLLLFAFAT------------- 329 (463)
T ss_pred EEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHhhHHHHHHHHHHHHHHHhc-------------
Confidence 35678889999999999999999999999999998 66766 6999999999999999999999884
Q ss_pred CccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 044175 117 SCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYV 189 (537)
Q Consensus 117 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l 189 (537)
+.++.+...++.++ .+...|...++.+.+.++++ +++.+++....-.+.+.++|.+-+.+
T Consensus 330 ------~~w~~~~~~v~~~~-~~~~~pa~~s~~s~~v~~~e------~g~v~~~is~i~~l~~~~~~~~~~~i 389 (463)
T KOG2816|consen 330 ------ETWMMFAAGVVVAL-AGIVFPAIRAFASILVSPEE------QGKVFGIISGIEGLSGVVSPALYGNI 389 (463)
T ss_pred ------cchhhhHHHHHHHh-hcchhHHHHhHHHhhccccc------ccchhhHHHHHHHHhhhhhHHHHHHH
Confidence 45666666555444 46778888999999988888 89999999988888888888877655
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.091 Score=54.60 Aligned_cols=152 Identities=13% Similarity=0.094 Sum_probs=95.7
Q ss_pred ccchHhHHHHhhhhcchhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCccc-hHHHHHHH
Q 044175 356 VIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVEVQRRNAFNQMPPKQI-SLFWLSFQ 434 (537)
Q Consensus 356 ~~~~~~~ii~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~l~~~ 434 (537)
....++..+..|..... ..|.. +..+-+..|.+++.+|-+++...+.. +. ..+++..+
T Consensus 78 aa~slg~~i~~liF~~W----s~k~~------~~k~Pli~s~ii~~~g~llY~~l~~~-----------~~~~~y~mL~~ 136 (488)
T KOG2325|consen 78 AASSLGHAIFSLIFGIW----SNKTG------SVKKPLIVSFLIAIIGNLLYLALAYV-----------PNGVKYLMLVA 136 (488)
T ss_pred HHHHHHHHhcchhhccc----ccccC------CcccCHHHHHHHHHHHHHHHHHHHhc-----------ccchHHHHHHH
Confidence 33455555555555542 22221 23555889999999999988665433 23 66788889
Q ss_pred HHHHHHHHHHHhhhhHHHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCccCCCCCCchhHH
Q 044175 435 YCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLSFGNFLSSVFVDIINAVTKRITPSKQGWLHGTDINKNNANL 514 (537)
Q Consensus 435 ~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~~~ 514 (537)
.++.|+|.+.... .=.|+++..-.+.|.++++.......+|.++||.+-..+..+...+ -.|.+ +..-+.|..
T Consensus 137 R~l~Gvg~~n~a~-lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G----~~i~~--~~~~n~YTa 209 (488)
T KOG2325|consen 137 RILTGVGVGNFAV-LRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKG----FMILP--GLIFNMYTA 209 (488)
T ss_pred HHHcCcCcccHHH-HHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCc----eEEcC--cceEEecch
Confidence 9999998655433 3577777666777888888888777888888887776665443221 01222 122233444
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 044175 515 FYWFLAILSVLNFVLYLYAAA 535 (537)
Q Consensus 515 ~f~~~~~l~~~~~v~~~~~~~ 535 (537)
.=|+...+.++.+++..+..|
T Consensus 210 p~w~m~i~~i~~~v~i~~~f~ 230 (488)
T KOG2325|consen 210 PAWLMAILWIIYIVIILFFFK 230 (488)
T ss_pred HHHHHHHHHHHHHHHHHhhee
Confidence 556777777777776666544
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.21 Score=51.61 Aligned_cols=155 Identities=11% Similarity=-0.022 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhh----h-cCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchh-------H
Q 044175 16 ACGFIFVLSSLENMGFIANAISMVLYFKN----E-MHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRF-------A 83 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~----~-l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~-------~ 83 (537)
....+++....-...|-...+.+..|.++ + +|+ +-...+..+...+.-.+..|+..++--|. +|+ .
T Consensus 285 ~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~-~vp~~~fQslNp~~Iii~~pI~a~l~~~l-~~~~~~ps~~~ 362 (498)
T COG3104 285 AAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGF-EVPPAWFQSLNPFFIILFSPILAALWTKL-GRGNKQPSTPI 362 (498)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccce-ecCHHHHHhhCHHHHHHHHHHHHHHHhHh-hcCCCCCCcch
Confidence 34444444444455555555666667654 2 221 12234555555666667778888887773 544 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhh
Q 044175 84 TCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKA 163 (537)
Q Consensus 84 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 163 (537)
-+-+++.++..+.+.+....... .+| . ...+.++++.+.+++++|+=++.|+..++++...|++-
T Consensus 363 KFalGl~l~g~~fl~l~~~~~~~--~~~-~------~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~------ 427 (498)
T COG3104 363 KFALGLILAGLGFLILLLAGIWF--GGP-S------GLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPAL------ 427 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh--cCC-C------CCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHH------
Confidence 25566666666666665542111 100 0 02477899999999999999999999999999988654
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHh
Q 044175 164 LASYFNYFLLTTTLAAVIGVTAIV 187 (537)
Q Consensus 164 r~~~~~~~~~~~~~g~~i~~~~~~ 187 (537)
.+..++.+......|..++..+++
T Consensus 428 ~s~~ma~wfLt~a~~~~l~g~va~ 451 (498)
T COG3104 428 KSFIMAMWFLTVAAGQTLGGQVAG 451 (498)
T ss_pred HHHHHHHHHHHHHHHHHhhceecc
Confidence 677777777777777777665555
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.13 Score=52.51 Aligned_cols=122 Identities=13% Similarity=0.169 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCcc---hhHHHHH
Q 044175 391 QRVGVGLVLSAVSMTIAGFVEVQRRNAFNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAG---MRTLSTS 467 (537)
Q Consensus 391 ~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~---~rg~~~g 467 (537)
+.+.+|.++..+|.+++...... ....+..+...+.++..++++|.+..=|+..++..++++++ .|..+..
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~------~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~ 75 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIP------PSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFN 75 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTS------SSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhc------chhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHH
Confidence 34677888888888775543111 00001234566777888999999999999999999999876 4566677
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCccCCCCCCchhHHHHHHHHHHHHHHHHHHhhhcccC
Q 044175 468 FTFLSLSFGNFLSSVFVDIINAVTKRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYLYAAAWY 537 (537)
Q Consensus 468 ~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~~~~~l~~~~~v~~~~~~~~y 537 (537)
.+....++|..++....+.+.+ +.++...|++.++..+++++.++.--++|
T Consensus 76 ~fY~~in~G~~~~~~~~~~i~~-------------------~~~~~~~f~i~~~~~~~~~~~f~~~~~~y 126 (372)
T PF00854_consen 76 WFYWGINIGSLFSPTLVPYIQQ-------------------NYGWFLGFGIPAIGMLLALIVFLSGRKRY 126 (372)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHH-------------------CS-HHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred HHHHHHhhhhHhhcccchhhcc-------------------ccchhhhhhHHHHHHHHHHHHHHhCCcCC
Confidence 7788888999988777665551 13556678888888888877766655544
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=95.21 E-value=4.9 Score=42.40 Aligned_cols=166 Identities=10% Similarity=0.001 Sum_probs=89.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC---CchhhHHHHHHHHHH-HHHHHhhHhHHHhhhccchhHHHHHHH
Q 044175 14 FRACGFIFVLSSLENMGFIANAISMVLYFKNEMH---FNLAGASNTLTNLMG-STFLLCLVGGFISDTFLSRFATCLIFG 89 (537)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~---~~~~~~~~~~~~~~~-~~~~~~~~~G~laD~~~Gr~~~~~~~~ 89 (537)
++.++.+.++-++-.+.|..+. -++|.+= .++.....+-....+ +..+...+-.+++|++ +|.+++.+..
T Consensus 23 ~~k~~~l~~m~f~i~f~y~~lR-----~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~-s~~~lFy~~~ 96 (491)
T PF03219_consen 23 LKKFLPLALMFFFILFNYTILR-----DLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRL-SREKLFYIII 96 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHH
Confidence 3455666666666655543222 1222221 133444455543333 4566677789999995 9999999887
Q ss_pred HHHHHHHHHHHHHh-hccccCCCCC--CCCCccCCchh---------HHHHHHHHHHHHhcccccc-cchhhcccCCCCC
Q 044175 90 TLEVLALVMITVQA-YSEKLHPPDC--GKSSCVKGGIA---------AYFYASLCLYALGSGGVRG-ALPALGAGQFDEK 156 (537)
Q Consensus 90 ~~~~i~~~l~~~~~-~~~~~~~~~~--~~~~~~~~~~~---------~~~~~~~~l~g~g~g~~~~-~~~~~~~~~~~~~ 156 (537)
..+..-..+.++.- .+.+..+|+. .+.+-....+. |.+.+.-+..-+=.....+ .-..+.+|.++.+
T Consensus 97 ~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~ 176 (491)
T PF03219_consen 97 IPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVE 176 (491)
T ss_pred HHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 77666555555432 1223333311 11000000011 1111111111111111122 3467888998877
Q ss_pred ChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 044175 157 DPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVST 191 (537)
Q Consensus 157 ~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~ 191 (537)
+ ..|.+.++....|+|.+++..+..++.+
T Consensus 177 e------AKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 177 E------AKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 6789999999999999999888877766
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.011 Score=63.21 Aligned_cols=169 Identities=12% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHH-HHHHHhhHhHHHhhhc-cchhHHHHHHHHHHHHH
Q 044175 18 GFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMG-STFLLCLVGGFISDTF-LSRFATCLIFGTLEVLA 95 (537)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~G~laD~~-~Gr~~~~~~~~~~~~i~ 95 (537)
....+...++.+...+..+++|.|+..+|+.++.+++.+.....+ +..++.++||++..|+ ++.|+++.+..+...++
T Consensus 308 ~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~ 387 (539)
T PF03137_consen 308 MCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVS 387 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHH
Confidence 456777788888888999999999999999999999998877555 7889999999999995 45667766666655554
Q ss_pred HHHHH----H-Hhh--ccccCCCC---------------CC-----------CCCccCC--chhHHHHHHHHHHHHhccc
Q 044175 96 LVMIT----V-QAY--SEKLHPPD---------------CG-----------KSSCVKG--GIAAYFYASLCLYALGSGG 140 (537)
Q Consensus 96 ~~l~~----~-~~~--~~~~~~~~---------------~~-----------~~~~~~~--~~~~~~~~~~~l~g~g~g~ 140 (537)
.+... + ... ...+..++ |- .-.|+.. .....+++..++..+..+.
T Consensus 388 ~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~ 467 (539)
T PF03137_consen 388 VILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFM 467 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHh
Confidence 44311 0 000 00111111 10 0122222 2345555555555454555
Q ss_pred ccccchhhcccCCCCCChhhhhhhhhHHHHHHHHH-HHHHHHHHHHHhhhccc
Q 044175 141 VRGALPALGAGQFDEKDPKGAKALASYFNYFLLTT-TLAAVIGVTAIVYVSTE 192 (537)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~g~~i~~~~~~~l~~~ 192 (537)
.........-+..++++ |+-+.++..... -+|.+=+|++-|.+.+.
T Consensus 468 ~~~p~~~i~LR~V~~~~------rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 468 SQVPSTLITLRCVPPEQ------RSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp -----------------------------------------------------
T ss_pred cccchheeeeccCChhh------cchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 44444455556777777 888888877554 47888889888888775
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=94.05 E-value=1.7 Score=45.01 Aligned_cols=135 Identities=10% Similarity=-0.021 Sum_probs=99.9
Q ss_pred HHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCC
Q 044175 36 ISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGK 115 (537)
Q Consensus 36 ~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 115 (537)
..+..|+..+ |+++...|..-+.-.+....++.+..++.+|+ |..|+=+++.....+...++..+-..+....
T Consensus 279 ~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~L~~~v~~~~~~~~~~----- 351 (432)
T PF06963_consen 279 GLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVCLALCVVSFWAPGSPF----- 351 (432)
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHHHHHhcCCCCc-----
Confidence 4577888776 99999999999999999999999999999995 9999999998877766655554322111000
Q ss_pred CCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 044175 116 SSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIV 187 (537)
Q Consensus 116 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~ 187 (537)
+..+...++.+.++-=+|.=+..-+...++.|..|+++ |+...+......++--.+....+-
T Consensus 352 ----~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~gvq~sl~~lf~ll~~~~~i 413 (432)
T PF06963_consen 352 ----SSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVSGVQNSLQSLFELLSFVLTI 413 (432)
T ss_pred ----hhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHHHHHHHHHHHHHHHHHHHHh
Confidence 01244555555555556666677788888899888777 999999988778887777665553
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.82 Score=40.13 Aligned_cols=61 Identities=8% Similarity=0.087 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044175 427 SLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLSFGNFLSSVFVDII 487 (537)
Q Consensus 427 ~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~~~~~l~~~i 487 (537)
+.+.+++.-++.|++....+.+.-.+..+..+++.|++..+++....+.+.++|..+...+
T Consensus 88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888899999999999999999999999999999999999999999888887766543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.68 E-value=1.1 Score=43.57 Aligned_cols=113 Identities=12% Similarity=0.135 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcC--------------CchhhHHHHHHHHHHHHHHHhhHhHHHhhhc-cchh
Q 044175 18 GFIFVLSSLENMGFIANAISMVLYFKNEMH--------------FNLAGASNTLTNLMGSTFLLCLVGGFISDTF-LSRF 82 (537)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~--------------~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~-~Gr~ 82 (537)
....+.-+|++.+|..+..-.-..+.++.+ -.....+.++..-.+-..+.-+..-..-||+ +|.|
T Consensus 15 ~~FwllGLcNN~~YVvmLSAA~DIl~~~~~~~~~~c~~h~~~r~c~~~stg~VLLaDilPsL~iKl~~Pff~~rfpf~~R 94 (409)
T KOG3880|consen 15 VAFWLLGLCNNYGYVVMLSAAEDILSEQVSDPGPTCIPHNSGRECQSVSTGAVLLADILPSLAIKLTAPFFIHRFPFGFR 94 (409)
T ss_pred hHHHHHHHhcccceEeehhhhhhhhccccCCCCCCcccccccccccccccchhhhhhhhHHHHHHHhchhhhhhcccchH
Confidence 334455678888876444434334433322 0111245566666666777777778888884 3444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhccc
Q 044175 83 ATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAG 151 (537)
Q Consensus 83 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~ 151 (537)
+.+..++.+.+.++.+++. +.++-+.+..+..++.|.-..+.-++-+.
T Consensus 95 --i~~~v~~sa~s~~lVafs~-------------------s~~~sL~GV~~aSissGlGEiTFL~lss~ 142 (409)
T KOG3880|consen 95 --IALVVLLSALSFFLVAFSN-------------------SVPMSLLGVVFASISSGLGEITFLALSSR 142 (409)
T ss_pred --HHHHHHHHhcceEEEEecc-------------------chhHHHhhhhhhhhcCCcceeehhhhhcc
Confidence 3344455666666666653 56778888888889988877776665554
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=92.92 E-value=1.5 Score=41.85 Aligned_cols=90 Identities=10% Similarity=0.059 Sum_probs=60.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchhHHHHH
Q 044175 388 TQLQRVGVGLVLSAVSMTIAGFVEVQRRNAFNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTS 467 (537)
Q Consensus 388 ~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g 467 (537)
++...+.+|.++..+|..........+ . .+.+.|.+.....+.+.+..........-..+.+|+ .||++.|
T Consensus 64 gp~~~l~iG~~~~~~GY~~~~l~~~~~---i-----~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvg 134 (250)
T PF06813_consen 64 GPWVVLLIGAVLGFVGYGLLWLAVSGR---I-----PSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVG 134 (250)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCc---c-----CccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceeh
Confidence 556667888888888876655432221 0 113455555555666666666666666666789986 6999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 044175 468 FTFLSLSFGNFLSSVFVDI 486 (537)
Q Consensus 468 ~~~~~~~~g~~~~~~l~~~ 486 (537)
+.....++++.+-..+...
T Consensus 135 ilk~~~GLSaai~t~i~~~ 153 (250)
T PF06813_consen 135 ILKGFFGLSAAIFTQIYSA 153 (250)
T ss_pred hhhHHHHhHHHHHHHHHHH
Confidence 9999999888875555443
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=92.38 E-value=16 Score=38.15 Aligned_cols=59 Identities=12% Similarity=0.157 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044175 429 FWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLSFGNFLSSVFVDII 487 (537)
Q Consensus 429 ~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~~~~~l~~~i 487 (537)
++.++..+++|+..+........+..+..+++.|..+..+..+.-.+|-..|..+.-.+
T Consensus 373 ~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~ 431 (437)
T TIGR00939 373 AYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF 431 (437)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555588899999999999999999999999999999999999888888887765543
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.62 E-value=17 Score=37.02 Aligned_cols=59 Identities=15% Similarity=0.208 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 044175 427 SLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLSFGNFLSSVFVD 485 (537)
Q Consensus 427 ~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~~~~~l~~ 485 (537)
+-+|.+....++|+..+-.......++.+..|++++..+..+..+....|-..|..+.-
T Consensus 342 ~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~ 400 (406)
T KOG1479|consen 342 SDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSW 400 (406)
T ss_pred CchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34666677888999999999999999999999999999988888887777777766543
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.57 E-value=0.67 Score=47.46 Aligned_cols=160 Identities=13% Similarity=0.010 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHhhhhcchhhheeccccCCCCCccccCCCcccccchHhHHHHhhhhcchhccccccccCCCCCCCchHH
Q 044175 313 MPILASTILMNTCLAQLQTFSVTQGAYMDPQLGSIKVPTPSIPVIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQR 392 (537)
Q Consensus 313 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 392 (537)
..+.......|..-.++.+.+.++ .+.. ..-.+.++.+.++..++.+|+.+...|+--.|+.|| +.-
T Consensus 38 ~~ia~Gvqf~wA~elsy~tPyl~~-lGvp------hk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRR------RPf 104 (498)
T KOG0637|consen 38 ASIAAGVQFGWALELSYLTPYLQS-LGVP------HKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRR------RPF 104 (498)
T ss_pred HHHHHHHHHHHHHHhccccHHHHH-cCCC------cccccccccccccccceecccccccccccccccccc------cch
Confidence 333444555555555555544433 2222 223466778889999999999999888776666544 344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh-ccCC-CccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchhHH-HHHHH
Q 044175 393 VGVGLVLSAVSMTIAGFVEVQRRNAF-NQMP-PKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTL-STSFT 469 (537)
Q Consensus 393 i~~g~~l~~~~~~~~~~~~~~~~~~~-~~~g-~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~-~~g~~ 469 (537)
+..+....++++++.++.......-. +... ..+..+...++++-+.=++......+.=++..+.+-.+.|.+ +.+.+
T Consensus 105 I~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f 184 (498)
T KOG0637|consen 105 ILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVF 184 (498)
T ss_pred HHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhH
Confidence 66677777888877776543221111 1100 112334444555555555555555666788888877777777 99999
Q ss_pred HHHHHHHHHHHHHHHH
Q 044175 470 FLSLSFGNFLSSVFVD 485 (537)
Q Consensus 470 ~~~~~~g~~~~~~l~~ 485 (537)
.++.++||.+|..+..
T Consensus 185 ~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 185 SFFMAVGNVLGYALGS 200 (498)
T ss_pred HHHHHhcceeeeeccc
Confidence 9999999999887765
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=90.57 E-value=1 Score=49.21 Aligned_cols=81 Identities=16% Similarity=0.227 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHH-HHHHHHHhhHhHHHhhhc-cchhHHHHHHHHHHHH
Q 044175 17 CGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNL-MGSTFLLCLVGGFISDTF-LSRFATCLIFGTLEVL 94 (537)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~G~laD~~-~Gr~~~~~~~~~~~~i 94 (537)
....++...++...+.+..+++|-|+.+++|.+...+..+.... .-+.+++..+||++.-|+ +..|.+..+.++...+
T Consensus 394 f~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l 473 (735)
T KOG3626|consen 394 FMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVL 473 (735)
T ss_pred HHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHH
Confidence 34577888999999999999999999999999999999998664 556788999999999985 4566666666555444
Q ss_pred HHH
Q 044175 95 ALV 97 (537)
Q Consensus 95 ~~~ 97 (537)
..+
T Consensus 474 ~l~ 476 (735)
T KOG3626|consen 474 SLL 476 (735)
T ss_pred HHH
Confidence 443
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.72 E-value=8.8 Score=40.00 Aligned_cols=116 Identities=15% Similarity=0.087 Sum_probs=69.8
Q ss_pred HHHHHHHhhHhHHHh---hhccchhHHHHHHHHHHHHHHHHHHHHhhccc-cCCCCCCCCCccCCchhHHHHHHHHHHHH
Q 044175 61 MGSTFLLCLVGGFIS---DTFLSRFATCLIFGTLEVLALVMITVQAYSEK-LHPPDCGKSSCVKGGIAAYFYASLCLYAL 136 (537)
Q Consensus 61 ~~~~~~~~~~~G~la---D~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 136 (537)
..+..++..+.+.+. ++ +||++++.++..+..++.++.-+...... +.+. .+....-..+.....+.-++.|+
T Consensus 289 g~g~v~~g~~~~~l~~rir~-fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t--~~~~~~~~~~~~~~~ii~~l~G~ 365 (461)
T KOG3098|consen 289 GLGEVIGGLDFSILSKRIRG-FGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPT--DSPPLLFTPSYYLALIIGFLLGF 365 (461)
T ss_pred hHHHHHHHHHHHHHhhhhhh-cccCcchhHHHHHHHHHHHHHhccccccCCCCCC--cccccccccchhHHHHHHHHHhh
Confidence 333444455555565 55 59999999999998888877666532111 0000 00000001234445555678999
Q ss_pred hcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 044175 137 GSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAI 186 (537)
Q Consensus 137 g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~ 186 (537)
+-+.........+++.+| ++ |..+++++-.-..++..++.+..
T Consensus 366 ~D~~~~t~~~~ii~~~~~-~~------~~~~fsi~kfyq~~~s~v~~f~~ 408 (461)
T KOG3098|consen 366 GDACFNTQRYVIIALLYP-DD------RAQAFSLFKFYQSVASCVAFFFS 408 (461)
T ss_pred HHHHHHHHHHHHHHHHhc-Cc------hHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999985 44 56666666555555555443333
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=88.27 E-value=23 Score=35.51 Aligned_cols=168 Identities=15% Similarity=0.073 Sum_probs=87.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhcCCchhhHHHHHHHHH-HHHHHHhhH----hHHHhhhc-cchhHHH
Q 044175 15 RACGFIFVLSSLENMGFIANAISMVLYFK---NEMHFNLAGASNTLTNLM-GSTFLLCLV----GGFISDTF-LSRFATC 85 (537)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~---~~l~~~~~~~~~~~~~~~-~~~~~~~~~----~G~laD~~-~Gr~~~~ 85 (537)
+....+++..++...+.--..+.+-.++. ++.|++....+.+..... ..+.+..+. +-+++|.. .|++.-+
T Consensus 119 ~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF 198 (354)
T PF05631_consen 119 SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPF 198 (354)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchH
Confidence 33445555556655555555554444443 235666665555554333 333444444 44556653 1456677
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHH-HHHH--H-HHHHHhcccccccchhhcccCCCCCChh-h
Q 044175 86 LIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAY-FYAS--L-CLYALGSGGVRGALPALGAGQFDEKDPK-G 160 (537)
Q Consensus 86 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~-~l~g~g~g~~~~~~~~~~~~~~~~~~~~-~ 160 (537)
..+..+.+++.++.... ..++.++++. +.+..+.-.-.. .+.. | .+.|+...+.......++-.+.|.-+++ +
T Consensus 199 ~~a~~~l~~~~~~I~~~-W~ENyg~~~~-~~~~~~~~~~a~~~i~~d~ril~LG~~qslFE~smy~FVflWtPaL~~~~~ 276 (354)
T PF05631_consen 199 DAAIVLLAVAAVLILKT-WPENYGDTSS-SSSLSGSFREAWRAILSDPRILLLGLIQSLFEGSMYLFVFLWTPALDPDDE 276 (354)
T ss_pred HHHHHHHHHHHHHHHhc-ccccCCCccc-ccchHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHheeeeeceecCCCC
Confidence 88877777776654322 1122222111 111100001111 1111 2 3467777777777788887777754432 1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHH
Q 044175 161 AKALASYFNYFLLTTTLAAVIGVT 184 (537)
Q Consensus 161 ~~~r~~~~~~~~~~~~~g~~i~~~ 184 (537)
.-.-+-.++.+..+..+|+.+.+.
T Consensus 277 ~~P~GlIFssFM~a~MlGS~lf~~ 300 (354)
T PF05631_consen 277 ELPLGLIFSSFMVAMMLGSSLFSR 300 (354)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHH
Confidence 233677777777788888877653
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=86.34 E-value=1.1 Score=46.84 Aligned_cols=132 Identities=11% Similarity=-0.045 Sum_probs=79.8
Q ss_pred hhcC---CchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHH-hhcc-ccCCCCCCCCCc
Q 044175 44 NEMH---FNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQ-AYSE-KLHPPDCGKSSC 118 (537)
Q Consensus 44 ~~l~---~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~-~~~~-~~~~~~~~~~~~ 118 (537)
+.++ +++...+.+..+..++..++..+....--++ .-|+++.++.++.++..+.-... ...+ .+ |.
T Consensus 245 ~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~-~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~-----Gi--- 315 (433)
T PF03092_consen 245 DALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNW-SWRRIFVVTTLVSVLASLFDLLLVTRWNLDL-----GI--- 315 (433)
T ss_pred ccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHhcccEEEEEEEeeee-----Cc---
Confidence 3455 7887777777666666666666664443342 66777777776666554432211 1000 11 00
Q ss_pred cCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 044175 119 VKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVSTEK 193 (537)
Q Consensus 119 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~ 193 (537)
++. ...+..-++..+..+...-....+++|..|+.. -++.+++.....|+|..++..++..+.+.+
T Consensus 316 --~d~-~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~------Egt~yall~s~~Nlg~~~s~~lg~~l~~~~ 381 (433)
T PF03092_consen 316 --PDQ-WFALGDTILEEVIGMIAFMPSLVLAARLCPKGS------EGTVYALLASFSNLGSSVSSTLGAFLMELF 381 (433)
T ss_pred --CCe-EEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 011 222222234444444445555677899999877 688999999899999999988888776543
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.84 E-value=5.5 Score=38.04 Aligned_cols=140 Identities=12% Similarity=0.104 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHhhHhHHHhhhccchhH---HHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHH
Q 044175 53 ASNTLTNLMGSTFLLCLVGGFISDTFLSRFA---TCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYA 129 (537)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~---~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (537)
-|.+.+.++.+..+++-+...+..|- |.| .+.+..++...... +.+.++. . +++ ..++..-++
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s--~~~ve~ymqivf~vs~a~l~-Lpilt~~--v---sP~------kes~~~s~i 349 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRS--SPKVESYMQIVFLVSIAALL-LPILTSS--V---SPS------KESPSESLI 349 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcC--CcccchHHHHHHHHHHHHHH-HHHHHhc--c---CCC------cCCchHHHH
Confidence 47888889988888888887777663 333 24444333333332 2222211 0 011 224555577
Q ss_pred HHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHH
Q 044175 130 SLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIG 209 (537)
Q Consensus 130 ~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~ 209 (537)
+.++.-.+.|..+|....+=.+..|++. |+..++++.+-.|+-.-++-..--.-....+-|..|.++......+
T Consensus 350 ~F~~~E~cvGlfwPSimkmRsqyIPEea------rstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a 423 (454)
T KOG4332|consen 350 GFCLFEACVGLFWPSIMKMRSQYIPEEA------RSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVA 423 (454)
T ss_pred HHHHHHHHHhhcchHHHHHHHhhCCHHH------HhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHH
Confidence 8888889999999999999888889887 8999999887666544332211100011235677888877766655
Q ss_pred HHH
Q 044175 210 FIA 212 (537)
Q Consensus 210 ~~~ 212 (537)
.+.
T Consensus 424 ~i~ 426 (454)
T KOG4332|consen 424 SIL 426 (454)
T ss_pred HHH
Confidence 443
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=84.64 E-value=3.7 Score=42.76 Aligned_cols=156 Identities=10% Similarity=-0.024 Sum_probs=79.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cCCchh-hHHHHHHHHHHHHHHHhhHhHHHhhhccchh-HHHHHHHHH
Q 044175 15 RACGFIFVLSSLENMGFIANAISMVLYFKNE-MHFNLA-GASNTLTNLMGSTFLLCLVGGFISDTFLSRF-ATCLIFGTL 91 (537)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-l~~~~~-~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~-~~~~~~~~~ 91 (537)
|.+|...+..++..+....+.+......+.+ .+.++. ..-.+...|.++-.+|..+..+..= -++| +.+.+..++
T Consensus 269 kki~~~~~~vf~~F~vTL~vFPgv~~~i~~~~~~~~~~~~~~i~~~~fNvgD~vGR~~~~~~~~--p~~~~~~l~i~s~~ 346 (437)
T TIGR00939 269 TKVWLLAFSVVFVFTVTLSVFPAITTAVTSSGLGLSNWFYPIICFLLFNLFDWLGRSLTSKFMW--PDEDSRWLPILSFL 346 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCceEEEeeccCCCCCccHHHHHHHHHHHHHHHHHhhhhheeEe--eCCCccchHHHHHH
Confidence 3455555544444443333333322222222 122222 3345556677777777775554311 1222 234444444
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCcc-CCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHH
Q 044175 92 EVLALVMITVQAYSEKLHPPDCGKSSCV-KGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNY 170 (537)
Q Consensus 92 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 170 (537)
-.+-..+..+....+..+ .+ --.+-+..++..++.|+..|-..+....+..+..++++ |..+-.+
T Consensus 347 R~iFIPlf~lcn~~~~~~--------~p~~~~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e------~e~aG~~ 412 (437)
T TIGR00939 347 RVLFIPLFLLCNYPQRSR--------LPVFFPGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHE------REVAGAL 412 (437)
T ss_pred HHHHHHHHHHhcCCcccc--------CCeeecccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHH------HHHHHHH
Confidence 444333333332211000 00 01234566777889999999999998888888866544 5555555
Q ss_pred HHHHHHHHHHHHHHHH
Q 044175 171 FLLTTTLAAVIGVTAI 186 (537)
Q Consensus 171 ~~~~~~~g~~i~~~~~ 186 (537)
...+.++|-.+|..++
T Consensus 413 ~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 413 MVIFLLVGLALGAVLS 428 (437)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5556666666665443
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=82.90 E-value=11 Score=38.51 Aligned_cols=61 Identities=7% Similarity=-0.081 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 044175 123 IAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYV 189 (537)
Q Consensus 123 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l 189 (537)
+.+..++..+..|+..|..+.+....+.|..++++ |.-+++...++-++|..++..++-++
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 55666667788999999999999999999877665 88889988888888888887776554
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.54 E-value=8.8 Score=38.21 Aligned_cols=99 Identities=10% Similarity=0.062 Sum_probs=59.7
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCccCC
Q 044175 426 ISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLSFGNFLSSVFVDIINAVTKRITPSKQGWLHGT 505 (537)
Q Consensus 426 ~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~~~~w~~~~ 505 (537)
-++|+....|++...-.++..+....-+++...++.-|...|++.+..- ++=..++.++.+..+- =++-
T Consensus 324 ~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl---~lQsilT~iVvd~~g~-------~L~i- 392 (433)
T KOG3810|consen 324 QHIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVAL---ILQSILTLIVVDDRGL-------GLDI- 392 (433)
T ss_pred cceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHH---HHHHhheEEEEccccc-------CCCc-
Confidence 4678888889998887777777766666667778888888888776433 3322333333322211 0000
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhhhcc
Q 044175 506 DINKNNANLFYWFLAILSVLNFVLYLYAAA 535 (537)
Q Consensus 506 ~l~~~~~~~~f~~~~~l~~~~~v~~~~~~~ 535 (537)
.-.-.-+..+|.+++++.++.....+..-+
T Consensus 393 r~Q~~~Y~~Yf~v~~~i~~~~~~~~~~~~~ 422 (433)
T KOG3810|consen 393 RTQFVVYSSYFIVLGVIFLIGFGIEYLMCR 422 (433)
T ss_pred ceeEEEEeehHHHHHHHHHHHHHHHHHHhh
Confidence 001123556788899888888766554433
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524 | Back alignment and structure |
|---|
Score = 285 bits (730), Expect = 6e-90
Identities = 84/536 (15%), Positives = 179/536 (33%), Gaps = 54/536 (10%)
Query: 15 RACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNL------AGASNTLTNLMGSTFLLC 68
R +I + E F + + + ++ A A + + + +
Sbjct: 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFP 71
Query: 69 LVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFY 128
L+GG+I+D F ++ T L + + + + +S FY
Sbjct: 72 LLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHS------------------VQGFY 113
Query: 129 ASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVY 188
L L ALGSGG++ + + QFD+ + F+ F T + ++
Sbjct: 114 TGLFLIALGSGGIKPLVSSFMGDQFDQSNKS---LAQKAFDMFYFTINFGSFFASLSMPL 170
Query: 189 VSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQVVVVAIKNRKLSL 248
+ F I ++ F+ + +G+ Y + P V+ A+ +
Sbjct: 171 LLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGK 230
Query: 249 PENPEELYEINEKERVGTEERIPHTNQFRCLDKAAIV-------PKDSTEAAPWRVCTLT 301
L I IP L A ++ +
Sbjct: 231 GNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDA 290
Query: 302 QVEEVKILTRMMPILASTILMNTCLAQLQTFSVTQGAYMDPQLGSIKVPTPSIPVIPLLF 361
V+ V+ + R++ + A + Q + + Q M + + L
Sbjct: 291 AVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMV---KPQWFEPAMMQALNPLL 347
Query: 362 MSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVEVQRRNAFNQM 421
+ +L+P + P ++ + L+++G G+ ++ +S + G +++
Sbjct: 348 VMLLIPFNNFVLYPAIERMGVKLT---ALRKMGAGIAITGLSWIVVGTIQLMMDGGS--- 401
Query: 422 PPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLSFGNFLSS 481
+S+FW Y + ++ LEF Y +AP M+ SF LS++ GN
Sbjct: 402 ---ALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVL 458
Query: 482 VFVDIINAVTKRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYLYAAAWY 537
+ + + T + + + +F A ++L +++ A Y
Sbjct: 459 LANVSVKSPT-----VTEQIV---QTGMSVTAFQMFFFAGFAILAAIVFALYARSY 506
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 5e-06
Identities = 35/211 (16%), Positives = 74/211 (35%), Gaps = 28/211 (13%)
Query: 15 RACGFIFVLSSLENMGFIANAISMVLYF-----KNEMHFNLAGASNTLTNLMGSTFLLCL 69
+F+ E + ++ Y ++H A A++ + +L
Sbjct: 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGT 72
Query: 70 VGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYA 129
+GGF++D + G L +L +++ + P A+ +
Sbjct: 73 IGGFVADRIIGARPAVFWGGVLIMLGHIVLAL--------PFG-----------ASALFG 113
Query: 130 SLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYV 189
S+ L +G+G ++ + L +DE D + + F+ F+ L A I +
Sbjct: 114 SIILIIIGTGFLKPNVSTLVGTLYDEHDRR----RDAGFSIFVFGINLGAFIAPLIVGAA 169
Query: 190 STEKAWWGGFLISSIVTFIGFIALVIGKPFY 220
+ F +++I FIG + G
Sbjct: 170 QEAAGYHVAFSLAAIGMFIGLLVYYFGGKKT 200
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 9e-06
Identities = 53/376 (14%), Positives = 108/376 (28%), Gaps = 108/376 (28%)
Query: 197 GGF----LISSIVTFIGFIALVIGKPFY---RNQQPGESPLVRVSQVVVVAIKNRKLSLP 249
G + + + K F+ +N E+ ++ + Q ++ I S
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET-VLEMLQKLLYQIDPNWTSRS 217
Query: 250 ENPEEL-YEINE-KERVGTEERIPHTNQF-RCLDKAAIVPKDSTEAAPWRV----CTLTQ 302
++ + I+ + + R+ + + CL +V + A W C
Sbjct: 218 DHSSNIKLRIHSIQAEL---RRLLKSKPYENCL----LVLLNVQNAKAWNAFNLSC---- 266
Query: 303 VEEVKIL--TRMMPILASTILMNTCLAQLQTFS--VTQGAYMDPQLGSIKVPTPSIP--- 355
KIL TR + T L S +T L + +P
Sbjct: 267 ----KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322
Query: 356 --VIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVEVQ 413
P +SI A I + + V ++ I + V
Sbjct: 323 LTTNPRR-LSI-----------IAESIRDGLATWDNWKHVN----CDKLTTIIESSLNVL 366
Query: 414 R----RNAFNQM---------PPKQISLFWL-SFQYCIFGIADMFTLVGLLEFFYKEAPA 459
R F+++ P +SL W + + + + L+E KE
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE--- 423
Query: 460 GMRTLSTSFTFLSLSFGNFLSSVFVDIINAVTKRITPSKQGWLHGTDINKNNA------- 512
T+S + S+++++ ++ + LH + ++ N
Sbjct: 424 --STIS-------------IPSIYLEL------KVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 513 --------NLFYWFLA 520
FY +
Sbjct: 463 DLIPPYLDQYFYSHIG 478
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 1e-04
Identities = 31/252 (12%), Positives = 72/252 (28%), Gaps = 46/252 (18%)
Query: 256 YEINEKERVGTEERIPHTNQ-----FRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVKILT 310
+E E + ++ + F C D V D ++ L++ EE+ +
Sbjct: 9 FETGEHQ-YQYKDILSVFEDAFVDNFDCKD----VQ-DMPKSI------LSK-EEIDHII 55
Query: 311 RMMPILASTILMNTCLAQLQTFSVTQ--GAYMDPQLGSIKVPTPSIPVIPLLFMSILL-- 366
++ T+ + L Q V + + + P + P + + +
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 367 --------PVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGF------VEV 412
V+ V + + +L R +++ + G ++V
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL-RPAKNVLI--DGV--LGSGKTWVALDV 170
Query: 413 QRRNAFNQMPPKQISLFWLSFQYCIFGIADMFTLVGL---LEFFYKEAPAGMRTLSTSFT 469
+I FWL+ + C + L L ++ + +
Sbjct: 171 CLSYKVQCKMDFKI--FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 470 FLSLSFGNFLSS 481
+ L S
Sbjct: 229 SIQAELRRLLKS 240
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 537 | |||
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.97 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.97 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.94 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.93 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.9 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.88 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.83 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.44 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.31 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.25 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.17 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.99 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.74 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.04 |
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-30 Score=270.96 Aligned_cols=443 Identities=17% Similarity=0.235 Sum_probs=294.5
Q ss_pred hhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----cCCchhhHHHHHHHHHHHHHHHhhHhHHHhhh-ccch
Q 044175 8 IKQKGGFRACGFIFVLSSLENMGFIANAISMVLYFKNE-----MHFNLAGASNTLTNLMGSTFLLCLVGGFISDT-FLSR 81 (537)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-----l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~-~~Gr 81 (537)
+..++++|.++.+.+..+++++++|++.++++.|++++ +|++..+.+++.+.+.++..++.+++|+++|| + ||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~ 84 (491)
T 4aps_A 6 KTFFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GA 84 (491)
T ss_dssp -----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CH
T ss_pred hhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc
Confidence 34566888999999999999999999999999999988 99999999999999999999999999999999 7 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhh
Q 044175 82 FATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGA 161 (537)
Q Consensus 82 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~ 161 (537)
|+++.++.++..++.+++.++. +...++++|+++|++.|...+...++++|++|+++.+
T Consensus 85 r~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~-- 143 (491)
T 4aps_A 85 RPAVFWGGVLIMLGHIVLALPF-------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR-- 143 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCC-------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTH--
T ss_pred hHHHHHHHHHHHHHHHHHHHhh-------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccccc--
Confidence 9999999999999998888753 6778999999999999999999999999999977632
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHhcccccccc---CCCC-CchhhHHHHH
Q 044175 162 KALASYFNYFLLTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQ---QPGE-SPLVRVSQVV 237 (537)
Q Consensus 162 ~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~v~~~~ 237 (537)
|++++++++.+.++|..++|.+++++.+..||++.|++.++..+++.+.++...++..++ ++++ ...++..+..
T Consensus 144 --r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (491)
T 4aps_A 144 --RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLL 221 (491)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHH
T ss_pred --ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHH
Confidence 777888888999999999999999999889999999998776666655554443332211 1111 1111111100
Q ss_pred HH--------------HHHhccCCCCCChhhhhhhhhhhccCCccccCCCCchhHhhhhccCCCCCCCCCCcccccchhH
Q 044175 238 VV--------------AIKNRKLSLPENPEELYEINEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQV 303 (537)
Q Consensus 238 ~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (537)
+. .....+. ..++........... ....+..+ . |+... ...
T Consensus 222 ~~~g~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----------~~~~~~~~-~-----------~~~~~-~~~ 276 (491)
T 4aps_A 222 VKVSLAVAGFIAIIVVMNLVGWN-SLPAYINLLTIVAIA-----------IPVFYFAW-M-----------ISSVK-VTS 276 (491)
T ss_dssp HHCCCCCHHHHHHHHHHHHHSSC-CTTHHHHHHHHHHHH-----------HHHHHHHH-H-----------C--------
T ss_pred HHHHHHHHHHHHHHHHHHhccCc-ccccchhhhhHHHHH-----------HHHHHHHH-H-----------hhccc-ccH
Confidence 00 0001100 000000000000000 00000000 0 00000 000
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhhhcchhhheecc-ccCCCCCccccCCCcccccchHhHHHHhhhhcchhccccccccC
Q 044175 304 EEVKILTRMMPILASTILMNTCLAQLQTFSVTQGA-YMDPQLGSIKVPTPSIPVIPLLFMSILLPVYELLFVPFARKITG 382 (537)
Q Consensus 304 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~r~~~ 382 (537)
.++++..+...++.....++..+.+..+....+.. ..+.. ....+.......+..++..++.+++.+++.||.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~-- 350 (491)
T 4aps_A 277 TEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS----WFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQ-- 350 (491)
T ss_dssp -----CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS----SSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC----ccCHHHHhccchHHHHHHHHHHHHHHHHHhccC--
Confidence 12233333445555555556665555443222211 11211 234556677777888888888888766655442
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchh
Q 044175 383 HPSGITQLQRVGVGLVLSAVSMTIAGFVEVQRRNAFNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMR 462 (537)
Q Consensus 383 ~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~r 462 (537)
......+..|.++.++++.+........ ... .+.+.+++++.+++.+++++...+..++++.|.+|++.|
T Consensus 351 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~ 420 (491)
T 4aps_A 351 ----PSSPTKFAVGLMFAGLSFLLMAIPGALY---GTS---GKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFN 420 (491)
T ss_dssp ------CHHHHHHHHHHHHHHHTTTHHHHHHC---CCC---TTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCS
T ss_pred ----CCchHHHHHHHHHHHHHHHHHHHHHHhc---CCC---CCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHH
Confidence 2456677788888888877766543220 000 124566777888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCccCCCCCCchhHHHHHHHHHHHHHHHHHHhhhcc
Q 044175 463 TLSTSFTFLSLSFGNFLSSVFVDIINAVTKRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYLYAAA 535 (537)
Q Consensus 463 g~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~~~~~l~~~~~v~~~~~~~ 535 (537)
++++|+.+...++|..+++.+.+.+.+ .++...|++.++++++..++.+++.+
T Consensus 421 g~~~g~~~~~~~~g~~i~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (491)
T 4aps_A 421 SQMMSMWFLSSSVGSALNAQLVTLYNA--------------------KSEVAYFSYFGLGSVVLGIVLVFLSK 473 (491)
T ss_dssp SSSTHHHHHHHHHHHHHHHHHGGGGGG--------------------SSTTHHHHHTHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc--------------------ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888765431 22345677777777777666655543
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-30 Score=272.53 Aligned_cols=470 Identities=17% Similarity=0.282 Sum_probs=288.3
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC------CchhhHHHHHHHHHHHHHHHhhHhHHHhhhcc-chhH
Q 044175 11 KGGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMH------FNLAGASNTLTNLMGSTFLLCLVGGFISDTFL-SRFA 83 (537)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~------~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~-Gr~~ 83 (537)
++++|.++.+.+..++.++++|++.++++.|+++++| ++..+.+++.+.+.++..++.+++|+++|| + |||+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~ 86 (524)
T 2xut_A 8 PKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYN 86 (524)
T ss_dssp -----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchH
Confidence 4567788889999999999999999999999999999 999999999999999999999999999999 7 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhh
Q 044175 84 TCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKA 163 (537)
Q Consensus 84 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 163 (537)
++.++.++..++.+++.++. .+...++++|+++|++.|...+...++++|++|+++ |..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---r~~ 145 (524)
T 2xut_A 87 TILWLSLIYCVGHAFLAIFE------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN---KSL 145 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHTS------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT---TTH
T ss_pred HHHHHHHHHHHHHHHHHHhc------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc---hHH
Confidence 99999999999998888762 157788999999999999999999999999999877 111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHhccccccccCCCCCchhhHHHHHHHHHHh
Q 044175 164 LASYFNYFLLTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQVVVVAIKN 243 (537)
Q Consensus 164 r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 243 (537)
+...+++.+.+.++|..++|.+++++.+..||++.|++.++..++..+.++..+++.++++|++++..+..+.+....++
T Consensus 146 ~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (524)
T 2xut_A 146 AQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLT 225 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhh
Confidence 34556668889999999999999999888899999998887766666555544444333333222222211111111111
Q ss_pred ccCCCCCChhhhhhhhhh-----hccCCccccC--------------CCCchhH--hhhhccCCCCCCCCCCcccccchh
Q 044175 244 RKLSLPENPEELYEINEK-----ERVGTEERIP--------------HTNQFRC--LDKAAIVPKDSTEAAPWRVCTLTQ 302 (537)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~--------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 302 (537)
++.+ ++......+.... ..... +... ...+..+ +++.+.. +..++
T Consensus 226 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~ 291 (524)
T 2xut_A 226 KVEG-KGNIGLVLALIGGVSAAYALVNI-PTLGIVAGLCCAMVLVMGFVGAGASLQLERARKS------------HPDAA 291 (524)
T ss_dssp -CTT-HHHHHHHHHHHHHHHHHHTGGGT-TTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCS------------CCSSS
T ss_pred hhcc-cCccchhhhhhhhhhhhhhhccc-chhhhhhhhhhhhhhhhcccccchhhHHhhhhcc------------ccHhH
Confidence 1100 0000000000000 00000 0000 0000011 1111000 00001
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhhcchhhheeccccCCCCCccccCCCcccccchHhHHHHhhhhcchhccccccccC
Q 044175 303 VEEVKILTRMMPILASTILMNTCLAQLQTFSVTQGAYMDPQLGSIKVPTPSIPVIPLLFMSILLPVYELLFVPFARKITG 382 (537)
Q Consensus 303 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~r~~~ 382 (537)
.++.++......++.....++..+.+..+.+..+....+... + .+.+.+...+.+..++..++.+++..+..+|+.+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (524)
T 2xut_A 292 VDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ--W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGV 368 (524)
T ss_dssp STTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe--e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCC
Confidence 122333434444444444555555555554444333333220 0 2334555667777888888888876555555432
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchh
Q 044175 383 HPSGITQLQRVGVGLVLSAVSMTIAGFVEVQRRNAFNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMR 462 (537)
Q Consensus 383 ~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~r 462 (537)
+ .+..+.+.+|+++.+++++.....+... .++ .+.+.+++++.+++.+++++...+..++++.+.+|++.|
T Consensus 369 ~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~ 439 (524)
T 2xut_A 369 K---LTALRKMGAGIAITGLSWIVVGTIQLMM-----DGG-SALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMK 439 (524)
T ss_dssp -----CCHHHHHTHHHHHHHHHHTTTTTTTTT-----TTT-CCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCC
T ss_pred C---CChHHHHHHHHHHHHHHHHHHHHHHHHh-----cCC-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 2 3556677788888888877655431100 000 123556677789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCccCCCCCCchhHHHHHHHHHHHHHHHHHHhhhccc
Q 044175 463 TLSTSFTFLSLSFGNFLSSVFVDIINAVTKRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYLYAAAW 536 (537)
Q Consensus 463 g~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~~~~~l~~~~~v~~~~~~~~ 536 (537)
|+++|+.++..++|+.+++.+.+.+.+.+.. +|...... +.....|++.+++++++.++++++.++
T Consensus 440 g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (524)
T 2xut_A 440 GTIMSFWTLSVTVGNLWVLLANVSVKSPTVT------EQIVQTGM--SVTAFQMFFFAGFAILAAIVFALYARS 505 (524)
T ss_dssp TTTHHHHGGGHHHHHHHHHHHHHHTTSCHHH------HHHHHHHS--CHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcccccc------cccccccc--cccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999876632211 12110000 011223777788888887777666544
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.5e-25 Score=229.37 Aligned_cols=399 Identities=9% Similarity=-0.063 Sum_probs=245.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHH
Q 044175 14 FRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEV 93 (537)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~ 93 (537)
++.++.+.+..+...+..+...+.++.+ .+++ .+..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYL-VEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHT-TSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHH
Confidence 3455556666666666655555555544 4567 9999999999999999999999999999995 99999999999999
Q ss_pred HHHHHHHH----HhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHH
Q 044175 94 LALVMITV----QAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFN 169 (537)
Q Consensus 94 i~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 169 (537)
++.+++++ +. +...++++|+++|++.|...+...++++|.+|+++ |+++++
T Consensus 104 ~~~~~~~~~~~~~~-------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~ 158 (451)
T 1pw4_A 104 AVMLFMGFVPWATS-------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVS 158 (451)
T ss_dssp HHHHHHHHCHHHHS-------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHH
T ss_pred HHHHHHHhhhhccc-------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------hhHHHH
Confidence 99999888 53 66789999999999999999999999999999777 899999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccc-chHHHHHHHHHHHHHHHHHHhccccccccCCCCCchhhHHHHHHHHHHhccCCC
Q 044175 170 YFLLTTTLAAVIGVTAIVYVSTEKA-WWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQVVVVAIKNRKLSL 248 (537)
Q Consensus 170 ~~~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 248 (537)
+...+.++|..++|.+++++.+..| ||+.|++.++..++..+..++..++.++....++. + + .
T Consensus 159 ~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------~--~ 222 (451)
T 1pw4_A 159 VWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-E-------------E--Y 222 (451)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-T-------------T--T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-h-------------h--h
Confidence 9999999999999999999888888 99999988776655544443333321111100000 0 0 0
Q ss_pred CCChhhhhhhhhhhccCCccccCCCCchhHhhhhccCCCCCCCCCCcccccchhHHHHHHHHhHHHH-HHHHHHHHHhhh
Q 044175 249 PENPEELYEINEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVKILTRMMPI-LASTILMNTCLA 327 (537)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~ 327 (537)
.++. +.+ . + ++.. ++..++....++....+.+...... ......+... .
T Consensus 223 ~~~~----~~~-~--~---~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 272 (451)
T 1pw4_A 223 KNDY----PDD-Y--N---EKAE-------------------QELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGI-L 272 (451)
T ss_dssp CCC------------------------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHH-H
T ss_pred cccc----ccc-c--h---hhhh-------------------cccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHH-H
Confidence 0000 000 0 0 0000 0000000000000001111111111 1111111111 1
Q ss_pred hcchhhheeccccCCCCCccccCCCcccccchHhHHHHhhhhcchhccccccccCCCCCCCchHHHHHHHHHHH-HHHHH
Q 044175 328 QLQTFSVTQGAYMDPQLGSIKVPTPSIPVIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSA-VSMTI 406 (537)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~-~~~~~ 406 (537)
.+.+.+..+..+.+ ....+.+.....+..++..++..++.+++.+ ++.+.+.++..+.. ++++.
T Consensus 273 ~~~~~~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 337 (451)
T 1pw4_A 273 DWSPTYLKEVKHFA------LDKSSWAYFLYEYAGIPGTLLCGWMSDKVFR---------GNRGATGVFFMTLVTIATIV 337 (451)
T ss_dssp HHHHHHBTTBSCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTST---------TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------CCchhHHHHHHHHHHHHHHH
Confidence 11121211111111 1111223334445555555555554433200 12233444444433 45444
Q ss_pred HHHHHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchhHHHHHHHHHHHHH-HHHHHHHHHH
Q 044175 407 AGFVEVQRRNAFNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFTFLSLSF-GNFLSSVFVD 485 (537)
Q Consensus 407 ~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~~-g~~~~~~l~~ 485 (537)
..... ..+.+.+....++.|++.....+..+.+..+.+|++.|+++.|+.+....+ |..+++.+.+
T Consensus 338 ~~~~~-------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g 404 (451)
T 1pw4_A 338 YWMNP-------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG 404 (451)
T ss_dssp TTSCC-------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhc-------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33310 124455566677778877788888889999999999999999999999999 9999999988
Q ss_pred HhhhhhccCCCCCCCCccCCCCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 044175 486 IINAVTKRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYLYA 533 (537)
Q Consensus 486 ~i~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~~~~~l~~~~~v~~~~~ 533 (537)
.+.+. .++...|++.+++.+++.++.+..
T Consensus 405 ~l~~~-------------------~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 405 YTVDF-------------------FGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHS-------------------SCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh-------------------cCcHHHHHHHHHHHHHHHHHHHHH
Confidence 76532 124556777777777777665554
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=8e-24 Score=219.15 Aligned_cols=359 Identities=11% Similarity=0.030 Sum_probs=227.1
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHH
Q 044175 12 GGFRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTL 91 (537)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~ 91 (537)
++++.+..+.+..++..+.++...+.+ +++++++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~ 100 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILL-PQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFL 100 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHH
Confidence 345566666666666666665444444 457788999999999999999999999999999999995 999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHH
Q 044175 92 EVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYF 171 (537)
Q Consensus 92 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 171 (537)
.+++.+++..... .++.+.++++|+++|++.|...+...++++|.+|+++ |++.+++.
T Consensus 101 ~~~~~~~~~~~~~----------------~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~ 158 (438)
T 3o7q_A 101 YALGAALFWPAAE----------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLA 158 (438)
T ss_dssp HHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHHHHHHH
T ss_pred HHHHHHHHHhccc----------------cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHHHHHHH
Confidence 9999988833211 1378899999999999999999999999999999888 89999999
Q ss_pred HHHHHHHHHHHHHHHhhhc-cccc-------------------------chHHHHHHHHHHHHHHHHHHhccccccccCC
Q 044175 172 LLTTTLAAVIGVTAIVYVS-TEKA-------------------------WWGGFLISSIVTFIGFIALVIGKPFYRNQQP 225 (537)
Q Consensus 172 ~~~~~~g~~i~~~~~~~l~-~~~g-------------------------~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~ 225 (537)
..+.++|..++|.+++++. +..+ |++.|++.+....+..+..+..+. ++.++
T Consensus 159 ~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~--p~~~~ 236 (438)
T 3o7q_A 159 QTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKF--PALQS 236 (438)
T ss_dssp HHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcC--Ccccc
Confidence 9999999999999999987 5544 899987766554444443333211 11100
Q ss_pred CCCchhhHHHHHHHHHHhccCCCCCChhhhhhhhhhhccCCccccCCCCchhHhhhhccCCCCCCCCCCcccccchhHHH
Q 044175 226 GESPLVRVSQVVVVAIKNRKLSLPENPEELYEINEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEE 305 (537)
Q Consensus 226 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (537)
++++ ++ ++ .....++.+. -.
T Consensus 237 ~~~~--------------------~~----------------~~--~~~~~~~~~~----------------------~~ 256 (438)
T 3o7q_A 237 DNHS--------------------DA----------------KQ--GSFSASLSRL----------------------AR 256 (438)
T ss_dssp TCCC--------------------CS----------------ST--TSHHHHHHHH----------------------TT
T ss_pred cccc--------------------cc----------------cc--cchhhhHHHH----------------------Hh
Confidence 0000 00 00 0000000000 00
Q ss_pred HHHHHhH-HHHHHHHHHHHHhhhhcchhhheeccccCCCCCccccCCCcccccchHhHHHHhhhhcchhccccccccCCC
Q 044175 306 VKILTRM-MPILASTILMNTCLAQLQTFSVTQGAYMDPQLGSIKVPTPSIPVIPLLFMSILLPVYELLFVPFARKITGHP 384 (537)
Q Consensus 306 ~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~r~~~~~ 384 (537)
.+.+... +..............+.+..+..+..+.+. ...+.......+..++..++..++.+++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~g~l~~r~-------- 322 (438)
T 3o7q_A 257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTA------GFAANYLTGTMVCFFIGRFTGTWLISRF-------- 322 (438)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHS--------
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcch------hHHHHHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence 0111111 111111111111111111210211111111 1112223333444455555555544333
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchhHH
Q 044175 385 SGITQLQRVGVGLVLSAVSMTIAGFVEVQRRNAFNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTL 464 (537)
Q Consensus 385 ~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~ 464 (537)
++.+.+..+.++.+++.+..... +..+.....++.+++.....|..+++..+..|++ ++.
T Consensus 323 ---~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~ 382 (438)
T 3o7q_A 323 ---APHKVLAAYALIAMALCLISAFA----------------GGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKY 382 (438)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHH
T ss_pred ---cchHHHHHHHHHHHHHHHHHHHc----------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccc
Confidence 33345566666666666555442 1122333457778888888899999999999977 899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 044175 465 STSFTFLSLSFGNFLSSVFVDIINAVT 491 (537)
Q Consensus 465 ~~g~~~~~~~~g~~~~~~l~~~i~~~~ 491 (537)
+.++.. .+.++..+++.+.+.+.+..
T Consensus 383 ~~~~~~-~~~~g~~~~~~~~g~l~~~~ 408 (438)
T 3o7q_A 383 GSSFIV-MTIIGGGIVTPVMGFVSDAA 408 (438)
T ss_dssp HHHHHH-HTTHHHHHHHHHHHHHHHHH
T ss_pred hhhHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 999877 67799999999998877544
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.9e-23 Score=217.49 Aligned_cols=155 Identities=12% Similarity=0.089 Sum_probs=114.8
Q ss_pred chhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHH
Q 044175 49 NLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFY 128 (537)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (537)
+..+.+++.+.+.++..++++++|+++||+ |||+++.++.+++.++.++++++........+.. .....-..+...++
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~-~~~~~~a~~~~~l~ 130 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINPDN-TVPVYLAGYVPEFV 130 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSS-SCCGGGGGCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchh-HHHHHHhhhHHHHH
Confidence 345668899999999999999999999995 9999999999999999999885321000000000 00000013778999
Q ss_pred HHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhccc--------ccchHHHH
Q 044175 129 ASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVSTE--------KAWWGGFL 200 (537)
Q Consensus 129 ~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~--------~g~~~~f~ 200 (537)
++|+++|+|.|+..+..+.+++|..|+++ |++..++...+..+|..+++.++..+... .+||..+.
T Consensus 131 ~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (491)
T 4gc0_A 131 IYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFA 204 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhh
Confidence 99999999999999999999999999877 88999988888889988888777655432 34666666
Q ss_pred HHHHHHHHHHH
Q 044175 201 ISSIVTFIGFI 211 (537)
Q Consensus 201 i~~~~~~~~~~ 211 (537)
+..+..++..+
T Consensus 205 ~~~~~~~~~~~ 215 (491)
T 4gc0_A 205 SECIPALLFLM 215 (491)
T ss_dssp TTHHHHHHHHH
T ss_pred hhhhhhhhhhh
Confidence 55554443333
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-22 Score=204.85 Aligned_cols=166 Identities=11% Similarity=0.088 Sum_probs=144.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHH
Q 044175 18 GFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALV 97 (537)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~ 97 (537)
..+....++..+......+.++.+ .+++|.++.+.+++.+.+.++..++.++.|+++||+ ||||++.++.++..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence 445566666667666666666654 578999999999999999999999999999999995 999999999999999999
Q ss_pred HHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHH
Q 044175 98 MITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTL 177 (537)
Q Consensus 98 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 177 (537)
++..+. +...+++.|+++|++.+...+...+++.|.+|+++ |++.++......++
T Consensus 81 ~~~~~~-------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 135 (375)
T 2gfp_A 81 VAVTTS-------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGILV 135 (375)
T ss_dssp HHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHHH
T ss_pred HHHHhc-------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHHH
Confidence 888874 67889999999999999999999999999999877 89999999999999
Q ss_pred HHHHHHHHHhhhcccccchHHHHHHHHHHHHHH
Q 044175 178 AAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGF 210 (537)
Q Consensus 178 g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~ 210 (537)
|..++|.+++++.+..+|+..|++.++..++..
T Consensus 136 g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 168 (375)
T 2gfp_A 136 SPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVT 168 (375)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 999999999999988899999987766554443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.9e-21 Score=199.15 Aligned_cols=388 Identities=10% Similarity=0.006 Sum_probs=213.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHH
Q 044175 15 RACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVL 94 (537)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i 94 (537)
|..+.+....++..+++....++++.|+++++|++..+.+++.+.+.++..++++++|+++||+ ||||++.++..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 4566666666777777777788999999999999999999999999999999999999999995 999999999887655
Q ss_pred HHHHH---HHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHH
Q 044175 95 ALVMI---TVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYF 171 (537)
Q Consensus 95 ~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 171 (537)
+.... ..... ....+..++++.+++.|...+...+...+..++.. ++++..++..
T Consensus 86 ~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~~g~~ 143 (417)
T 2cfq_A 86 MFAPFFIFIFGPL------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSNFEFGRA 143 (417)
T ss_dssp CHHHHHHHTHHHH------------------HHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH----HHHTCCHHHH
T ss_pred HHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh----hhcccchHHH
Confidence 33211 11110 00012334555555555444444444444332111 1245556666
Q ss_pred HHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHhccccccccCCCCCchhhHHHHHHHHHHhccCCCCCC
Q 044175 172 LLTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQVVVVAIKNRKLSLPEN 251 (537)
Q Consensus 172 ~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 251 (537)
....++|..++|.+++++.+ .+|+..|++.++..++..+..+..+++ ++++.+ .++.
T Consensus 144 ~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~----~~~~~~------------------~~~~ 200 (417)
T 2cfq_A 144 RMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTD----APSSAT------------------VANA 200 (417)
T ss_dssp SSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCC----CSCSSC------------------SSSS
T ss_pred HHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcc----cccccc------------------cccc
Confidence 66778999999999998876 589998887655433332222221111 110000 0000
Q ss_pred hhhhhhhhhhhccCCccccCCCCchhHhhhhccCCCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHhhhhcch
Q 044175 252 PEELYEINEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVKILTRMMPILASTILMNTCLAQLQT 331 (537)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 331 (537)
+ + ++....+..++.+ .+ . .+.+.............+..+.+..+
T Consensus 201 ---------~--~---~~~~~~~~~~~~~----------------~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (417)
T 2cfq_A 201 ---------V--G---ANHSAFSLKLALE----------------LF-----R-QPKLWFLSLYVIGVSCTYDVFDQQFA 244 (417)
T ss_dssp ---------S--S---SCCCCCCHHHHHH----------------HT-----T-CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------c--c---cccccccHHHHHH----------------Hh-----c-CCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 0000000000000 00 0 01111111111111111122222222
Q ss_pred hhheeccccCCCCCccccCC---CcccccchHhHHHHhhhhcchhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 044175 332 FSVTQGAYMDPQLGSIKVPT---PSIPVIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAG 408 (537)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ii~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~ 408 (537)
.+... ..+.. .... +....++.+..++...+..++.|++. +.+.+..+.++.++++...+
T Consensus 245 ~~~~~--~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g-----------~~~~l~~~~~~~~~~~~~~~ 307 (417)
T 2cfq_A 245 NFFTS--FFATG----EQGTRVFGYVTTMGELLNASIMFFAPLIINRIG-----------GKNALLLAGTIMSVRIIGSS 307 (417)
T ss_dssp HHHHH--TSSSH----HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHH--HHhcc----CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------HHHHHHHHHHHHHHHHHHHH
Confidence 11111 01100 0001 11222333333444444455444332 33445566666666654443
Q ss_pred HHHHHHhhhhccCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchhHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 044175 409 FVEVQRRNAFNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSF-TFLSLSFGNFLSSVFVDII 487 (537)
Q Consensus 409 ~~~~~~~~~~~~~g~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~~g~~~~~~l~~~i 487 (537)
.. .+.+.++....+.+++.....+..+.++.|.+|++.||++.++ ++..+++|+.+++.+.+.+
T Consensus 308 ~~---------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l 372 (417)
T 2cfq_A 308 FA---------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNM 372 (417)
T ss_dssp TC---------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTH
T ss_pred Hh---------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHH
Confidence 31 1233444445556666666667778899999999999999998 4888889999999988865
Q ss_pred hhhhccCCCCCCCCccCCCCCCchhHHHHHHHHHHHHHHHHHHhhhcc
Q 044175 488 NAVTKRITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYLYAAA 535 (537)
Q Consensus 488 ~~~~~~~~~~~~~w~~~~~l~~~~~~~~f~~~~~l~~~~~v~~~~~~~ 535 (537)
.+. .++...|.+.+++++++.++.+.+.+
T Consensus 373 ~~~-------------------~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 373 YES-------------------IGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHH-------------------SHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHh-------------------cCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 421 23455677888888877776655444
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=8.6e-13 Score=136.45 Aligned_cols=177 Identities=15% Similarity=0.103 Sum_probs=149.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhcc--chhHHHHHHHHHH
Q 044175 15 RACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFL--SRFATCLIFGTLE 92 (537)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~--Gr~~~~~~~~~~~ 92 (537)
|.++.+.+..++..++++++..+.+.|+++.+|++..+.+.+.+...++..++.++.|+++|| + |||+.+..+..+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL 330 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHH
Confidence 567788888888999999999999999998899999999999999999999999999999999 8 9999988887766
Q ss_pred H-HHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHH
Q 044175 93 V-LALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYF 171 (537)
Q Consensus 93 ~-i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 171 (537)
. ++.+++.... ..+...+.+..++.|++.+...+....++.|.+|+++ |++++++.
T Consensus 331 ~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~ 387 (451)
T 1pw4_A 331 VTIATIVYWMNP-----------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFT 387 (451)
T ss_dssp HHHHHHHTTSCC-----------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHHHH
T ss_pred HHHHHHHHHHhc-----------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hhhHHHHH
Confidence 6 5555444331 1245667777788999988888888899999999877 89999999
Q ss_pred HHHHHH-HHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHh
Q 044175 172 LLTTTL-AAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVI 215 (537)
Q Consensus 172 ~~~~~~-g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~ 215 (537)
+...++ |..++|.+.+++.+..||+..|++.+++.+++.+..+.
T Consensus 388 ~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 388 GLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999 99999999999999899999998877766666555443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=4.1e-11 Score=123.30 Aligned_cols=168 Identities=14% Similarity=0.075 Sum_probs=135.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHH
Q 044175 15 RACGFIFVLSSLENMGFIANAISMVLY-FKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEV 93 (537)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~y-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~ 93 (537)
|.++...+..++....+++...+++.| +++.+|++..+.+...+...++..++.+++|+++||+ |||+++..+.++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 456777777788888888888999999 8888899999999999999999999999999999995 99999999998888
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHH
Q 044175 94 LALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLL 173 (537)
Q Consensus 94 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 173 (537)
++.++..... +.. ..+..++.|++.+...|...++..|.+|++ ++.+.++..
T Consensus 337 ~~~~~~~~~~-------------------~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~- 388 (438)
T 3o7q_A 337 ALCLISAFAG-------------------GHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSFIV- 388 (438)
T ss_dssp HHHHHHHHCC-------------------HHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHHHHH-
T ss_pred HHHHHHHHcC-------------------CcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhhHHH-
Confidence 8877766652 333 334457888999999999999989988843 344444443
Q ss_pred HHHHHHHHHHHHHhhhccccc-chHHHHHHHHHHHHHHH
Q 044175 174 TTTLAAVIGVTAIVYVSTEKA-WWGGFLISSIVTFIGFI 211 (537)
Q Consensus 174 ~~~~g~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~ 211 (537)
...+|..++|.+.|++.+..| ++..|.+.++..++..+
T Consensus 389 ~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 389 MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 556999999999999999888 99998876655444333
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.1e-11 Score=125.25 Aligned_cols=174 Identities=10% Similarity=-0.022 Sum_probs=124.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC---chhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHH
Q 044175 16 ACGFIFVLSSLENMGFIANAISMVLYFKNEMHF---NLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLE 92 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~ 92 (537)
..+...+..+.....++.....++.|+++.++. +..+.+...+...+...++.+++|+++||+ |||+++..+.++.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~ 299 (417)
T 2cfq_A 221 KLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIM 299 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHH
Confidence 344444444444445555556678888766653 234456667777778888999999999995 9999999888887
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHH-
Q 044175 93 VLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYF- 171 (537)
Q Consensus 93 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~- 171 (537)
+++.++.... .+...+++..++.+++.+...+....+++|.+|++. |++..+..
T Consensus 300 ~~~~~~~~~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~ 354 (417)
T 2cfq_A 300 SVRIIGSSFA-------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCF 354 (417)
T ss_dssp HHHHHHHTTC-------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHHHHH
T ss_pred HHHHHHHHHh-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHH
Confidence 7776555443 244556666667777766666667889999999765 88888874
Q ss_pred HHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHh
Q 044175 172 LLTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVI 215 (537)
Q Consensus 172 ~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~ 215 (537)
..+..+|+.++|.++|++.+..|++..|.+.+++.+++.+..+.
T Consensus 355 ~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 355 CFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp TTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence 56677999999999999988888888888777766666555443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.17 E-value=9e-11 Score=122.86 Aligned_cols=186 Identities=8% Similarity=-0.025 Sum_probs=137.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHH-----HHHH
Q 044175 16 ACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCL-----IFGT 90 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~-----~~~~ 90 (537)
..+.+.+..++....++.....++.|+++.++.+..+.+.+.+...+...++.++.|+++||+ |||+... .+.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~ 362 (491)
T 4aps_A 284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLM 362 (491)
T ss_dssp THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHH
Confidence 455566666677777777788889999988888877888888888999999999999999995 9987655 6777
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHH
Q 044175 91 LEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNY 170 (537)
Q Consensus 91 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 170 (537)
+..++.+++........-. ...+...+.+..++.|++.+...+...+++.|.+|++. |+++.++
T Consensus 363 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~ 426 (491)
T 4aps_A 363 FAGLSFLLMAIPGALYGTS----------GKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NSQMMSM 426 (491)
T ss_dssp HHHHHHTTTHHHHHHCCCC----------TTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SSSSTHH
T ss_pred HHHHHHHHHHHHHHhcCCC----------CCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHHHHH
Confidence 7777766655542110000 01255667778889999999999999999999999888 8999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHhcccc
Q 044175 171 FLLTTTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPF 219 (537)
Q Consensus 171 ~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~ 219 (537)
.+...++|..++|.+.+++.+. ++...|.+.+...++..+..+...++
T Consensus 427 ~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 427 WFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988754 66667776666555555555444433
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.1e-08 Score=106.87 Aligned_cols=182 Identities=9% Similarity=-0.076 Sum_probs=119.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHH
Q 044175 16 ACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLA 95 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~ 95 (537)
.........++..+..+........++.+..+.+..+.........+...++.++++++.||+ |||+.++.+.....++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~ 355 (491)
T 4gc0_A 277 VIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIG 355 (491)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHH
Confidence 333344444444444333444444555567788888887777788889999999999999995 9999999999888888
Q ss_pred HHHHHHHhhccccCCCCCCCCCccCCchhH-HHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHH
Q 044175 96 LVMITVQAYSEKLHPPDCGKSSCVKGGIAA-YFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLT 174 (537)
Q Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 174 (537)
.+.+....... ..... ...+..+..+.+. ...|....+.+|.+|.+. |+++.++....
T Consensus 356 ~~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~------R~~~~g~~~~~ 414 (491)
T 4gc0_A 356 MFSLGTAFYTQ--------------APGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAI------RGKALAIAVAA 414 (491)
T ss_dssp HHHHHHHHHTT--------------CCHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTT------HHHHHHHHHHH
T ss_pred HHHHHHHHhcc--------------cchHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhH------HHHHHHHHHHH
Confidence 77666543211 11222 2222222222332 234666788999999988 99999998888
Q ss_pred HHHHHHHHHHHHhhhcc------cccchHHHHHHHHHHHHHHHHHHhcccc
Q 044175 175 TTLAAVIGVTAIVYVST------EKAWWGGFLISSIVTFIGFIALVIGKPF 219 (537)
Q Consensus 175 ~~~g~~i~~~~~~~l~~------~~g~~~~f~i~~~~~~~~~~~~~~~~~~ 219 (537)
..+++.+++.+.+.+.+ ..++...|++.+.+.+++.+..++..||
T Consensus 415 ~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PE 465 (491)
T 4gc0_A 415 QWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE 465 (491)
T ss_dssp HHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecC
Confidence 88998888877766543 2345556776666666665555554444
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.8e-09 Score=108.67 Aligned_cols=162 Identities=9% Similarity=-0.045 Sum_probs=125.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHH-HH
Q 044175 15 RACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTL-EV 93 (537)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~-~~ 93 (537)
|.++...+..++...++++...+.+.|+++.+|.++.+.+.+.+...++..++.++.|+++||+ ||+ +..+... ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 3566777777888888888888889999888999999999999999999999999999999995 883 2333333 22
Q ss_pred HHHH--HHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHH
Q 044175 94 LALV--MITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYF 171 (537)
Q Consensus 94 i~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 171 (537)
.+.. ...... ..+.+.+++..++.|++.+...+...++..|..| ++ |++..+..
T Consensus 276 ~~~~~~~~~~~~-----------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~~~g~~ 331 (375)
T 2gfp_A 276 AGLLMWIPDWFG-----------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGTAGALV 331 (375)
T ss_dssp TSSSSSHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHHHHHHH
T ss_pred HHHHHHHHhhhc-----------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cchHHHHH
Confidence 2222 122211 0145566677888999999999999999999887 44 89999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccccchHHHHHHH
Q 044175 172 LLTTTLAAVIGVTAIVYVSTEKAWWGGFLISS 203 (537)
Q Consensus 172 ~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~ 203 (537)
....++|..++|.+.+.+.+..+++..+.+.+
T Consensus 332 ~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 332 GGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 98999999999999998877777777766533
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.6e-06 Score=91.16 Aligned_cols=149 Identities=9% Similarity=-0.008 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHhhHhHHHh----hhccch----hHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCchh
Q 044175 53 ASNTLTNLMGSTFLLCLVGGFIS----DTFLSR----FATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGIA 124 (537)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~G~la----D~~~Gr----~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (537)
.+.+.....+...+..++.+++. ||. || ++.+.++.++..++.+++........ + +...+.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-------~---~~~~~~ 405 (524)
T 2xut_A 337 PAMMQALNPLLVMLLIPFNNFVLYPAIERM-GVKLTALRKMGAGIAITGLSWIVVGTIQLMMD-------G---GSALSI 405 (524)
T ss_dssp HHHHHTTSGGGHHHHGGGTTTC-------------CCHHHHHTHHHHHHHHHHTTTTTTTTTT-------T---TCCCCS
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhc-------C---CCCcCH
Confidence 44444444455566666666654 453 43 24566777777777665554320000 0 001245
Q ss_pred HHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcccc--cc-------
Q 044175 125 AYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLTTTLAAVIGVTAIVYVSTEK--AW------- 195 (537)
Q Consensus 125 ~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~--g~------- 195 (537)
.++.+..++.|++.+...+...+++.|..|++. |++++++.+...++|..++|.+.+.+.+.. +|
T Consensus 406 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~ 479 (524)
T 2xut_A 406 FWQILPYALLTFGEVLVSATGLEFAYSQAPKAM------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMS 479 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence 667778889999999999999999999999888 899999999999999999999999887642 23
Q ss_pred --hHHHHHHHHHHHHHHHHHHhccc
Q 044175 196 --WGGFLISSIVTFIGFIALVIGKP 218 (537)
Q Consensus 196 --~~~f~i~~~~~~~~~~~~~~~~~ 218 (537)
+..|++.+.+.+++.+..+...+
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (524)
T 2xut_A 480 VTAFQMFFFAGFAILAAIVFALYAR 504 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC----
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHH
Confidence 22355555555555544444333
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 537 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.93 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.89 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.25 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.2 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=6.2e-25 Score=225.04 Aligned_cols=176 Identities=10% Similarity=0.035 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHH
Q 044175 18 GFIFVLSSLENMGFIA---NAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVL 94 (537)
Q Consensus 18 ~~~~~~~~~~~~~~~~---~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i 94 (537)
|.++...++..+.+|. ..+...++++ ++|+|.++.+++.+++.++..++.+++|+++||+ |||+++.++.++..+
T Consensus 24 w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~ 101 (447)
T d1pw4a_ 24 WQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAA 101 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence 4444444444444443 3345566776 5899999999999999999999999999999995 999999999999999
Q ss_pred HHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHH
Q 044175 95 ALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLT 174 (537)
Q Consensus 95 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 174 (537)
+.++++.+.... .+...+++.|++.|++.|...+...++++|.+|+++ |++.+++...+
T Consensus 102 ~~~~~~~~~~~~---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~ 160 (447)
T d1pw4a_ 102 VMLFMGFVPWAT---------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCA 160 (447)
T ss_dssp HHHHHHHCHHHH---------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHH
T ss_pred HHhhccccchhh---------------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------ccccccccccc
Confidence 998887653211 256789999999999999999999999999999877 99999999999
Q ss_pred HHHHHHHHHHHHhhhccc-ccchHHHHHHHHHHHHHHHHHHhc
Q 044175 175 TTLAAVIGVTAIVYVSTE-KAWWGGFLISSIVTFIGFIALVIG 216 (537)
Q Consensus 175 ~~~g~~i~~~~~~~l~~~-~g~~~~f~i~~~~~~~~~~~~~~~ 216 (537)
.++|..++|.+++.+... .+|++.|++.+....+..+..+..
T Consensus 161 ~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 203 (447)
T d1pw4a_ 161 HNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAM 203 (447)
T ss_dssp HHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHh
Confidence 999999999888776554 479998888776665554444443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=1.3e-21 Score=196.38 Aligned_cols=395 Identities=9% Similarity=-0.010 Sum_probs=224.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHH
Q 044175 15 RACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVL 94 (537)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i 94 (537)
|..|.+.+..++..+++....+.++.|+++++|+|+.+.|++.+++.++..++.++.|+++||+ ||||+++++.....+
T Consensus 7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~ 85 (417)
T d1pv7a_ 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence 5678888888888888888889999999999999999999999999999999999999999995 999999999998888
Q ss_pred HHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHHH
Q 044175 95 ALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLLT 174 (537)
Q Consensus 95 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 174 (537)
+..+.......+ ......++.+.+.+.+.+...........+..++ ...++....+.....
T Consensus 86 ~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 146 (417)
T d1pv7a_ 86 MFAPFFIFIFGP---------------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEK----VSRRSNFEFGRARMF 146 (417)
T ss_dssp THHHHHHHTHHH---------------HHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHH----HHHHHSCCHHHHHHH
T ss_pred HHHHHHHhhhhh---------------hHHHHHHHHHHHhhhcccccccchhhcccccccc----hhhhhHHHHHHHhhh
Confidence 887777653110 0112223334444444444333333333222221 112244556666667
Q ss_pred HHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHhccccccccCCCCCchhhHHHHHHHHHHhccCCCCCChhh
Q 044175 175 TTLAAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIALVIGKPFYRNQQPGESPLVRVSQVVVVAIKNRKLSLPENPEE 254 (537)
Q Consensus 175 ~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 254 (537)
...+..++|.+++.+.+. +|+..+........+..+..++..++.++.++++++.+
T Consensus 147 ~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 202 (417)
T d1pv7a_ 147 GCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVG----------------------- 202 (417)
T ss_dssp HHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHH-----------------------
T ss_pred hccccccccccccccccc-cccccccchhhHHHHHHHHHHHHhcccccchhhhhhhh-----------------------
Confidence 788888999998888764 45555554444443333333333222111111100000
Q ss_pred hhhhhhhhccCCccccCCCCchhHhhhhccCCCCCCCCCCcccccchhHHHHHHHHhHHHHHHHHHHHHHhhhhcchhhh
Q 044175 255 LYEINEKERVGTEERIPHTNQFRCLDKAAIVPKDSTEAAPWRVCTLTQVEEVKILTRMMPILASTILMNTCLAQLQTFSV 334 (537)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 334 (537)
+...........+ ... . + ...... ......................
T Consensus 203 --------------~~~~~~~~~~~~~-~~~-------~-------~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 248 (417)
T d1pv7a_ 203 --------------ANHSAFSLKLALE-LFR-------Q-------P--KLWFLS---LYVIGVSCTYDVFDQQFANFFT 248 (417)
T ss_dssp --------------SCCCCCCHHHHHH-HTT-------S-------S--HHHHHH---HHHHHHHHHHHHHHHHHHHHHT
T ss_pred --------------hhccccccccccc-ccc-------c-------c--cccchh---hhhHHHHHHHHhhhcccccccc
Confidence 0000000000000 000 0 0 001111 1111111111111111111000
Q ss_pred eeccccCCCCCccccCCCcccccchHhHHHHhhhhcchhccccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 044175 335 TQGAYMDPQLGSIKVPTPSIPVIPLLFMSILLPVYELLFVPFARKITGHPSGITQLQRVGVGLVLSAVSMTIAGFVEVQR 414 (537)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~g~~l~~~~~~~~~~~~~~~ 414 (537)
......... ............+...+...+..++ .+|. ++.+.+.++.++.+++.+.....
T Consensus 249 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l----~~r~-------~~~~~~~~~~~~~~~~~~~~~~~---- 309 (417)
T d1pv7a_ 249 SFFATGEQG----TRVFGYVTTMGELLNASIMFFAPLI----INRI-------GGKNALLLAGTIMSVRIIGSSFA---- 309 (417)
T ss_dssp TSSSCHHHH----HHHHHHHHHHHHHHHHHHHTTHHHH----HHHH-------CHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred ccccccccc----hhhhcccccccccccccchhhhhhh----hccc-------ccccchhhhHHHHHHhhhccccc----
Confidence 000000000 0000111122223333333333333 3332 44556677777777776665542
Q ss_pred hhhhccCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCcchhHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhcc
Q 044175 415 RNAFNQMPPKQISLFWLSFQYCIFGIADMFTLVGLLEFFYKEAPAGMRTLSTSFT-FLSLSFGNFLSSVFVDIINAVTKR 493 (537)
Q Consensus 415 ~~~~~~~g~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~-~~~~~~g~~~~~~l~~~i~~~~~~ 493 (537)
.+.+.+....++.+++.+...+...++..|.+|++.|+++.|+. ++...+|..+++.+.+.+.+..
T Consensus 310 -----------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~-- 376 (417)
T d1pv7a_ 310 -----------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-- 376 (417)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH--
T ss_pred -----------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 34566667788889999999999999999999999999999975 5667899999999888766332
Q ss_pred CCCCCCCCccCCCCCCchhHHHHHHHHHHHHHHHHHHhhhccc
Q 044175 494 ITPSKQGWLHGTDINKNNANLFYWFLAILSVLNFVLYLYAAAW 536 (537)
Q Consensus 494 ~~~~~~~w~~~~~l~~~~~~~~f~~~~~l~~~~~v~~~~~~~~ 536 (537)
++...|++.++++++..++..++.|+
T Consensus 377 -----------------g~~~~~~~~~~~~~~~~~~~~~~l~~ 402 (417)
T d1pv7a_ 377 -----------------GFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred -----------------CHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34566888888888877777666553
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.25 E-value=4.1e-11 Score=120.77 Aligned_cols=179 Identities=15% Similarity=0.044 Sum_probs=138.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHH
Q 044175 14 FRACGFIFVLSSLENMGFIANAISMVLYFKNEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEV 93 (537)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~ 93 (537)
.+.++.+....++.....++...+.+.|+.+.++++..+.+.......+...++.+++|+++||+ +|++..........
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~ 326 (447)
T d1pw4a_ 248 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMT 326 (447)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHHH
T ss_pred CchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhHH
Confidence 34667788888888888899999999999999999999999999999999999999999999995 98776555544433
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCccCCchhHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHHH
Q 044175 94 LALVMITVQAYSEKLHPPDCGKSSCVKGGIAAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFLL 173 (537)
Q Consensus 94 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 173 (537)
+...........+ ..+.....+..++.|++.+...+....+..|.+|++. |+++.++.+.
T Consensus 327 ~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~ 386 (447)
T d1pw4a_ 327 LVTIATIVYWMNP--------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTGL 386 (447)
T ss_dssp HHHHHHHHTTSCC--------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHHHHHH
T ss_pred HHHHHHHHHHhcc--------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHH
Confidence 3333222221000 2355666777788888888888889999999999777 8999998887
Q ss_pred HHHH-HHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHH
Q 044175 174 TTTL-AAVIGVTAIVYVSTEKAWWGGFLISSIVTFIGFIAL 213 (537)
Q Consensus 174 ~~~~-g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~ 213 (537)
..++ |..++|.+.+++.+..||+..|.+.+...+++.++.
T Consensus 387 ~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 427 (447)
T d1pw4a_ 387 FGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL 427 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 7776 567789999999999999998887666555544443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.20 E-value=1.5e-11 Score=121.70 Aligned_cols=146 Identities=11% Similarity=-0.018 Sum_probs=120.7
Q ss_pred hhcCCchhhHHHHHHHHHHHHHHHhhHhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCccCCch
Q 044175 44 NEMHFNLAGASNTLTNLMGSTFLLCLVGGFISDTFLSRFATCLIFGTLEVLALVMITVQAYSEKLHPPDCGKSSCVKGGI 123 (537)
Q Consensus 44 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (537)
++.+.+....+.......++..++..+.+++.||+ |||+++.++.++..++.+++.... +
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~-------------------~ 311 (417)
T d1pv7a_ 252 ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFAT-------------------S 311 (417)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTCC-------------------C
T ss_pred cccccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhcccccc-------------------c
Confidence 33455666777888888899999999999999995 999999999999888888777653 5
Q ss_pred hHHHHHHHHHHHHhcccccccchhhcccCCCCCChhhhhhhhhHHHHHH-HHHHHHHHHHHHHHhhhcccccchHHHHHH
Q 044175 124 AAYFYASLCLYALGSGGVRGALPALGAGQFDEKDPKGAKALASYFNYFL-LTTTLAAVIGVTAIVYVSTEKAWWGGFLIS 202 (537)
Q Consensus 124 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~ 202 (537)
.+.+++..++.|++.+...+...+++.|.+|++. |++.++..+ ....+|..++|.++|++.+..|++..|++.
T Consensus 312 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~ 385 (417)
T d1pv7a_ 312 ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVL 385 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
Confidence 6777888889999999999999999999999877 888888755 456789999999999999999999999887
Q ss_pred HHHHHHHHHHHHh
Q 044175 203 SIVTFIGFIALVI 215 (537)
Q Consensus 203 ~~~~~~~~~~~~~ 215 (537)
+++.++..++.++
T Consensus 386 ~~~~~~~~~~~~~ 398 (417)
T d1pv7a_ 386 GLVALGFTLISVF 398 (417)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7666555444433
|