Citrus Sinensis ID: 044200

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130--
Protein Sequence
SGTVASVTLRQPSATPGSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQIMGGSVVGPLLAVGTVFVVAATFNNPSYHRLPVQDEQQRTSVSAGGEGQSHVGSSGGGGGGGGTESGHMAGGD
Secondary Structure (PSIPRED)
cccEEEEEEEcccccccccEEEEEEEEEEEEEccEEccccccccccccEEEEEEcccccEEEEEEcEEEEEcccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEccccccccEEEEEcEEEEEEEEccccccccccccccccEEEEEEccccEEEEccEEcHHHccccEEEEEEEcccccHccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
sgtvasvtlrqpsatpgstitfhgrFDILWISatflpqnaaylplpnifaislagpqgqimggsvvgPLLAVGTVFVVAAtfnnpsyhrlpvqdeqqrtsvsaggegqshvgssggggggggtesghmaggd
Flexible Loop (DISEMBL)
sgtvasvtlrqpsatpgstitfHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQIMGGSVVGPLLAVGTVFVVAATFNNPSYHRLPVQDEQQRTSVSAGGEGQshvgssggggggggtesghmaggd
Low Complexity Region (SEG)
SGTVASVTLRQPSATPGSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQIMGGSVVGPLLavgtvfvvaatfNNPSYHRLPVQDEQQRTSVSAggegqshvgssggggggggtesghmaggD
Disordered region (IsUnstruct)
******************TITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQIMGGSVVGPLLAVGTVFVVAATFNNPSYH********************************************
Disordered Region (DISOPRED)
SGTVASVTLRQPSATPGSTITFHGRFDILWISATF****************SLAGPQGQIMGGSVVGPLLAVGTVFVVAATFNN************************************************
Disordered Region (DISEMBL)
**********QPSATPGSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQIMGGSVVGPLLAVGTVFVVAATFNNPSYHRLPVQ***************************************
Disordered Region (DISPRO)
*GTVASVTLRQPSATPGSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQIMGGSVVGPLLAVGTVFVVAATFNNPSYHRLPV****************************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
SGTVASVTLRQPSATPGSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQIMGGSVVGPLLAVGTVFVVAATFNNPSYHRLPVQDEQQRTSVSAGGEGQSHVGSSGGGGGGGGTESGHMAGGD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	132	2.2.26 [Sep-21-2011]
Q9S7C9	311	Putative DNA-binding prot	no	no	0.674	0.286	0.455	4e-05

>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1

 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/101 (45%), Positives = 63/101 (62%), Gaps = 12/101 (11%)

Query: 1   SGTVASVTLRQPSATP---------GSTITFHGRFDILWISATFLPQNAAYLPLPNIFAI 51
           +GTV++VTLRQP  TP         G  +T HGRF+IL ++ T LP  A         +I
Sbjct: 147 NGTVSNVTLRQP-VTPGNGGGVSGGGGVVTLHGRFEILSLTGTVLPPPAPP--GAGGLSI 203

Query: 52  SLAGPQGQIMGGSVVGPLLAVGTVFVVAATFNNPSYHRLPV 92
            LAG QGQ++GGSVV PL+A   V ++AA+F+N  + RLP+
Sbjct: 204 FLAGGQGQVVGGSVVAPLIASAPVILMAASFSNAVFERLPI 244


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.134    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,547,223
Number of Sequences: 539616
Number of extensions: 2480114
Number of successful extensions: 39237
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 211
Number of HSP's that attempted gapping in prelim test: 21461
Number of HSP's gapped (non-prelim): 12978
length of query: 132
length of database: 191,569,459
effective HSP length: 98
effective length of query: 34
effective length of database: 138,687,091
effective search space: 4715361094
effective search space used: 4715361094
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
224067058	274	predicted protein [Populus trichocarpa]	0.886	0.427	0.728	2e-38
255545940	310	DNA binding protein, putative [Ricinus c	0.704	0.3	0.776	4e-34
357465293	290	hypothetical protein MTR_3g100470 [Medic	0.833	0.379	0.666	1e-33
297792253	270	hypothetical protein ARALYDRAFT_917968 [	0.939	0.459	0.597	1e-33
356515688	284	PREDICTED: putative DNA-binding protein	0.939	0.436	0.623	2e-33
356507995	280	PREDICTED: putative DNA-binding protein	0.939	0.442	0.623	2e-33
224081949	304	predicted protein [Populus trichocarpa]	0.704	0.305	0.787	6e-33
15240535	276	Predicted AT-hook DNA-binding family pro	0.939	0.449	0.589	2e-32
357489975	252	hypothetical protein MTR_5g066020 [Medic	0.878	0.460	0.637	3e-32
297849858	207	hypothetical protein ARALYDRAFT_471623 [	0.962	0.613	0.595	6e-31

>gi|224067058|ref|XP_002302339.1| predicted protein [Populus trichocarpa] gi|222844065|gb|EEE81612.1| predicted protein [Populus trichocarpa]

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 86/118 (72%), Positives = 98/118 (83%), Gaps = 1/118 (0%)

Query: 1   SGTVASVTLRQPSATPGSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQI 60
           SGTVA+VTLRQPSATPG+TITFHGRFDIL ISATFLPQ A+Y P+PN F ISLAGPQGQI
Sbjct: 116 SGTVANVTLRQPSATPGATITFHGRFDILSISATFLPQTASY-PVPNSFTISLAGPQGQI 174

Query: 61  MGGSVVGPLLAVGTVFVVAATFNNPSYHRLPVQDEQQRTSVSAGGEGQSHVGSSGGGG 118
           +GG V G L+A GTVFVVAA+FNNPSYHRLP+++E + +    GGEGQS   S  GGG
Sbjct: 175 VGGIVAGSLVAAGTVFVVAASFNNPSYHRLPLEEEGRTSGSDGGGEGQSPAVSGAGGG 232

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545940|ref|XP_002514030.1| DNA binding protein, putative [Ricinus communis] gi|223547116|gb|EEF48613.1| DNA binding protein, putative [Ricinus communis]

 Score =  149 bits (375), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 73/94 (77%), Positives = 82/94 (87%), Gaps = 1/94 (1%)

Query: 1   SGTVASVTLRQPSATPGSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQI 60
           SGTVA+VTLRQPS TPGSTITFHGRFDIL ISATF+PQ  +Y P+PN F ISLAGPQGQI
Sbjct: 156 SGTVANVTLRQPSTTPGSTITFHGRFDILSISATFMPQTVSY-PVPNTFTISLAGPQGQI 214

Query: 61  MGGSVVGPLLAVGTVFVVAATFNNPSYHRLPVQD 94
           +GG V G L+A GTV+++AATFNNPSYHRLPV D
Sbjct: 215 VGGLVAGSLIAAGTVYIMAATFNNPSYHRLPVDD 248

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357465293|ref|XP_003602928.1| hypothetical protein MTR_3g100470 [Medicago truncatula] gi|355491976|gb|AES73179.1| hypothetical protein MTR_3g100470 [Medicago truncatula]

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 74/111 (66%), Positives = 92/111 (82%), Gaps = 1/111 (0%)

Query: 1   SGTVASVTLRQPSATPGSTITFHGRFDILWISATFLPQNAAYLP-LPNIFAISLAGPQGQ 59
           SGTVA+VTLRQPS TPG+T+TFHGRFDIL I+ATF+PQ     P +P+ F+ISLAGPQGQ
Sbjct: 135 SGTVANVTLRQPSTTPGTTVTFHGRFDILSITATFVPQQHGVSPAIPSNFSISLAGPQGQ 194

Query: 60  IMGGSVVGPLLAVGTVFVVAATFNNPSYHRLPVQDEQQRTSVSAGGEGQSH 110
           I+GG V G L+A GTVFV+A++FNNPSYHRLP+++++   SVS GGEG S 
Sbjct: 195 IVGGIVAGNLIAAGTVFVIASSFNNPSYHRLPLEEDEGGNSVSGGGEGNSQ 245

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792253|ref|XP_002864011.1| hypothetical protein ARALYDRAFT_917968 [Arabidopsis lyrata subsp. lyrata] gi|297309846|gb|EFH40270.1| hypothetical protein ARALYDRAFT_917968 [Arabidopsis lyrata subsp. lyrata]

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 80/134 (59%), Positives = 101/134 (75%), Gaps = 10/134 (7%)

Query: 1   SGTVASVTLRQPS-ATPGSTITFHGRFDILWISATFLP---QNAAYLPLPNIFAISLAGP 56
           SG+VA+VTLRQPS A PGSTITFHG+FD+L +SATFLP   + +   P+ N F +SLAGP
Sbjct: 111 SGSVANVTLRQPSPAAPGSTITFHGKFDLLSVSATFLPPPPRTSLSPPVSNFFTVSLAGP 170

Query: 57  QGQIMGGSVVGPLLAVGTVFVVAATFNNPSYHRLPVQDEQQRTSVSAGGEGQSHVGSSGG 116
           QGQI+GG V GPL++ GTV+V+AA+FNNPSYHRLP ++EQ+ ++ +   EGQS   S   
Sbjct: 171 QGQIIGGFVAGPLISAGTVYVIAASFNNPSYHRLPAEEEQKHSAGTGEREGQSPPVS--- 227

Query: 117 GGGGGGTESGHMAG 130
              GGG ESG MAG
Sbjct: 228 ---GGGEESGQMAG 238

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515688|ref|XP_003526530.1| PREDICTED: putative DNA-binding protein ESCAROLA-like [Glycine max]

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/130 (62%), Positives = 98/130 (75%), Gaps = 6/130 (4%)

Query: 1   SGTVASVTLRQPSATPGSTITFHGRFDILWISATFLPQNAAYLP-LPNIFAISLAGPQGQ 59
           SGTVA+VTLRQPS TPG+T+TFHGRFDIL +SATFLPQ +   P +PN FAISLAGPQGQ
Sbjct: 135 SGTVANVTLRQPSTTPGTTVTFHGRFDILSVSATFLPQQSGASPAVPNGFAISLAGPQGQ 194

Query: 60  IMGGSVVGPLLAVGTVFVVAATFNNPSYHRLPVQDEQQRTSVSAGGEGQSHVGSSGGGGG 119
           I+GG V G L+A GTVFV+AA+FNNP+YHRLP ++E      ++ G+G S   S GG  G
Sbjct: 195 IVGGLVAGGLMAAGTVFVIAASFNNPAYHRLPPEEEG-----ASAGDGHSPQVSGGGDSG 249

Query: 120 GGGTESGHMA 129
            G  ES  M+
Sbjct: 250 HGQAESCGMS 259

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507995|ref|XP_003522748.1| PREDICTED: putative DNA-binding protein ESCAROLA-like [Glycine max]

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/130 (62%), Positives = 98/130 (75%), Gaps = 6/130 (4%)

Query: 1   SGTVASVTLRQPSATPGSTITFHGRFDILWISATFLPQNAAYLP-LPNIFAISLAGPQGQ 59
           SGTVA+VTLRQPS TPG+T+TFHGRFDIL +SATFLPQ +   P +PN FAISLAGPQGQ
Sbjct: 130 SGTVANVTLRQPSTTPGTTVTFHGRFDILSVSATFLPQQSGASPAVPNGFAISLAGPQGQ 189

Query: 60  IMGGSVVGPLLAVGTVFVVAATFNNPSYHRLPVQDEQQRTSVSAGGEGQSHVGSSGGGGG 119
           I+GG V G L+A GTVFV+AA+FNNP+YHRLP ++E      ++ G+G S   S GG  G
Sbjct: 190 IVGGLVAGGLMAAGTVFVIAASFNNPAYHRLPPEEEG-----ASAGDGHSPPVSGGGDSG 244

Query: 120 GGGTESGHMA 129
            G  ES  M+
Sbjct: 245 HGQAESCGMS 254

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081949|ref|XP_002306539.1| predicted protein [Populus trichocarpa] gi|222855988|gb|EEE93535.1| predicted protein [Populus trichocarpa]

 Score =  145 bits (365), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 74/94 (78%), Positives = 82/94 (87%), Gaps = 1/94 (1%)

Query: 1   SGTVASVTLRQPSATPGSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQI 60
           +GTVA+VTLRQPS TPGSTITFHGRFDIL ISATFLPQ  +Y PLPN F ISLAGPQGQI
Sbjct: 144 TGTVANVTLRQPSTTPGSTITFHGRFDILSISATFLPQTTSY-PLPNSFTISLAGPQGQI 202

Query: 61  MGGSVVGPLLAVGTVFVVAATFNNPSYHRLPVQD 94
           +GG V G L+A GTVFVVAA+FNNPSYHRL V++
Sbjct: 203 VGGIVAGGLVAAGTVFVVAASFNNPSYHRLQVEE 236

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240535|ref|NP_199781.1| Predicted AT-hook DNA-binding family protein [Arabidopsis thaliana] gi|8978267|dbj|BAA98158.1| unnamed protein product [Arabidopsis thaliana] gi|119657378|tpd|FAA00288.1| TPA: AT-hook motif nuclear localized protein 17 [Arabidopsis thaliana] gi|225879102|dbj|BAH30621.1| hypothetical protein [Arabidopsis thaliana] gi|332008463|gb|AED95846.1| Predicted AT-hook DNA-binding family protein [Arabidopsis thaliana]

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/134 (58%), Positives = 100/134 (74%), Gaps = 10/134 (7%)

Query: 1   SGTVASVTLRQPS-ATPGSTITFHGRFDILWISATFLP---QNAAYLPLPNIFAISLAGP 56
           SG+VA+VTLRQPS A  GSTITFHG+FD+L +SATFLP   + +   P+ N F +SLAGP
Sbjct: 117 SGSVANVTLRQPSPAALGSTITFHGKFDLLSVSATFLPPPPRTSLSPPVSNFFTVSLAGP 176

Query: 57  QGQIMGGSVVGPLLAVGTVFVVAATFNNPSYHRLPVQDEQQRTSVSAGGEGQSHVGSSGG 116
           QGQI+GG V GPL++ GTV+V+AA+FNNPSYHRLP ++EQ+ ++ +   EGQS   S   
Sbjct: 177 QGQIIGGFVAGPLISAGTVYVIAASFNNPSYHRLPAEEEQKHSAGTGEREGQSPPVS--- 233

Query: 117 GGGGGGTESGHMAG 130
              GGG ESG MAG
Sbjct: 234 ---GGGEESGQMAG 244

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357489975|ref|XP_003615275.1| hypothetical protein MTR_5g066020 [Medicago truncatula] gi|355516610|gb|AES98233.1| hypothetical protein MTR_5g066020 [Medicago truncatula]

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 74/116 (63%), Positives = 90/116 (77%)

Query: 1   SGTVASVTLRQPSATPGSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQI 60
           SGTVA+VTLRQPS  PG+T+TFHGRF+IL ISATF     +  P+   F+ISLA PQGQI
Sbjct: 114 SGTVANVTLRQPSGPPGTTVTFHGRFNILSISATFFSPLESSPPMNKEFSISLAAPQGQI 173

Query: 61  MGGSVVGPLLAVGTVFVVAATFNNPSYHRLPVQDEQQRTSVSAGGEGQSHVGSSGG 116
           +GG VVGPLLA GTVFV+AA+FNNPSYHRLP++++ +  SVS G E +S    SGG
Sbjct: 174 VGGFVVGPLLAAGTVFVIAASFNNPSYHRLPLEEDVRNNSVSGGYEEKSPPQLSGG 229

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849858|ref|XP_002892810.1| hypothetical protein ARALYDRAFT_471623 [Arabidopsis lyrata subsp. lyrata] gi|297338652|gb|EFH69069.1| hypothetical protein ARALYDRAFT_471623 [Arabidopsis lyrata subsp. lyrata]

 Score =  138 bits (348), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 81/136 (59%), Positives = 94/136 (69%), Gaps = 9/136 (6%)

Query: 1   SGTVASVTLRQPS-ATPGSTITFHGRFDILWISATFLPQNAAYLP---LPNIFAISLAGP 56
           SG+VA VTLRQPS A PGSTITFHG+FD+L +SATFLP            N F +SLAGP
Sbjct: 64  SGSVADVTLRQPSPAAPGSTITFHGKFDLLSVSATFLPPPPQTSLPPPFSNFFTVSLAGP 123

Query: 57  QGQIMGGSVVGPLLAVGTVFVVAATFNNPSYHRLPVQDEQQRTSVSAGGEGQSHVGSSGG 116
           QGQ++GG V GPL+A GTV+VVA +FNNP+YHRLP  +E+QR   SA GEGQS   S   
Sbjct: 124 QGQVIGGFVAGPLVAAGTVYVVATSFNNPAYHRLPAAEEEQRD--SAEGEGQSPPVS--- 178

Query: 117 GGGGGGTESGHMAGGD 132
           G GG    S HM G D
Sbjct: 179 GSGGESMYSCHMGGSD 194

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
TAIR|locus:2012537	206	AT1G14490 "AT1G14490" [Arabido	0.757	0.485	0.557	1.8e-25
TAIR|locus:2157007	276	AT5G49700 [Arabidopsis thalian	0.757	0.362	0.557	1.8e-25
TAIR|locus:2118051	339	AT4G12050 "AT4G12050" [Arabido	0.75	0.292	0.435	1.1e-18
TAIR|locus:2132639	324	AT4G22810 "AT4G22810" [Arabido	0.75	0.305	0.427	1.2e-17
TAIR|locus:2050946	317	AHL22 "AT2G45430" [Arabidopsis	0.765	0.318	0.420	9.2e-17
TAIR|locus:2101916	265	AHL18 "AT3G60870" [Arabidopsis	0.696	0.347	0.422	2e-15
TAIR|locus:505006460	281	AHL20 "AT4G14465" [Arabidopsis	0.704	0.330	0.427	2.6e-15
TAIR|locus:2129490	292	AT4G17800 [Arabidopsis thalian	0.719	0.325	0.454	4.2e-15
TAIR|locus:2084958	315	AHL19 "AT-hook motif nuclear-l	0.712	0.298	0.436	1.2e-14
TAIR|locus:2099956	310	AGF2 "AT-hook protein of GA fe	0.727	0.309	0.397	2.5e-14

TAIR|locus:2012537 AT1G14490 "AT1G14490" [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 58/104 (55%), Positives = 71/104 (68%)

Query:     1 SGTVASVTLRQPS-ATPGSTITFHGRFDILWISATFLPQ---NAAYLPLPNIFAISLAGP 56
             SG+VA VTLRQPS A PGSTITFHG+FD+L +SATFLP     +   P+ N F +SLAGP
Sbjct:    64 SGSVADVTLRQPSPAAPGSTITFHGKFDLLSVSATFLPPLPPTSLSPPVSNFFTVSLAGP 123

Query:    57 QGQIMGGSVVGPLLXXXXXXXXXXXXNNPSYHRLPVQDEQQRTS 100
             QG+++GG V GPL+             NPSYHRLP  +E+QR S
Sbjct:   124 QGKVIGGFVAGPLVAAGTVYFVATSFKNPSYHRLPATEEEQRNS 167

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2157007 AT5G49700 [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 58/104 (55%), Positives = 74/104 (71%)

Query:     1 SGTVASVTLRQPS-ATPGSTITFHGRFDILWISATFLP---QNAAYLPLPNIFAISLAGP 56
             SG+VA+VTLRQPS A  GSTITFHG+FD+L +SATFLP   + +   P+ N F +SLAGP
Sbjct:   117 SGSVANVTLRQPSPAALGSTITFHGKFDLLSVSATFLPPPPRTSLSPPVSNFFTVSLAGP 176

Query:    57 QGQIMGGSVVGPLLXXXXXXXXXXXXNNPSYHRLPVQDEQQRTS 100
             QGQI+GG V GPL+            NNPSYHRLP ++EQ+ ++
Sbjct:   177 QGQIIGGFVAGPLISAGTVYVIAASFNNPSYHRLPAEEEQKHSA 220

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2118051 AT4G12050 "AT4G12050" [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 44/101 (43%), Positives = 66/101 (65%)

Query:     1 SGTVASVTLRQPSATPGSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQI 60
             +G+V +VT+RQP + PGS ++ HGRF+IL +S +FLP  A   P     ++ LAG QGQ+
Sbjct:   179 TGSVTNVTIRQPGSPPGSVVSLHGRFEILSLSGSFLPPPAP--PAATGLSVYLAGGQGQV 236

Query:    61 MGGSVVGPLLXXXXXXXXXXXXNNPSYHRLPVQDEQQRTSV 101
             +GGSVVGPLL            +N +Y RLP+++++ +T V
Sbjct:   237 VGGSVVGPLLCSGPVVVMAASFSNAAYERLPLEEDEMQTPV 277

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2132639 AT4G22810 "AT4G22810" [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 44/103 (42%), Positives = 66/103 (64%)

Query:     1 SGTVASVTLRQPSA--TPGSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQG 58
             +G V +VT+RQP +  +PGS ++ HGRF+IL +S +FLP  A   P     ++ LAG QG
Sbjct:   166 TGNVTNVTIRQPGSHPSPGSVVSLHGRFEILSLSGSFLPPPAP--PTATGLSVYLAGGQG 223

Query:    59 QIMGGSVVGPLLXXXXXXXXXXXXNNPSYHRLPVQDEQQRTSV 101
             Q++GGSVVGPLL            +N +Y RLP+++++ +T V
Sbjct:   224 QVVGGSVVGPLLCAGPVVVMAASFSNAAYERLPLEEDEMQTPV 266

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2050946 AHL22 "AT2G45430" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 9.2e-17, P = 9.2e-17
 Identities = 45/107 (42%), Positives = 64/107 (59%)

Query:     1 SGTVASVTLRQPSATPG---STITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQ 57
             +G V +VT+RQP++ PG   S +  HGRF+IL +S +FLP  A   P  +   I LAG Q
Sbjct:   150 NGAVTNVTIRQPASVPGGGSSVVNLHGRFEILSLSGSFLPPPAP--PAASGLTIYLAGGQ 207

Query:    58 GQIMGGSVVGPLLXXXXXXXXXXXXNNPSYHRLPVQ-DEQQRTSVSA 103
             GQ++GGSVVGPL+             N +Y RLP++ D+Q+  +  A
Sbjct:   208 GQVVGGSVVGPLMASGPVVIMAASFGNAAYERLPLEEDDQEEQTAGA 254

GO:0003680 "AT DNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009640 "photomorphogenesis" evidence=IMP

GO:0009647 "skotomorphogenesis" evidence=IMP

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2101916 AHL18 "AT3G60870" [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 41/97 (42%), Positives = 58/97 (59%)

Query:     1 SGTVASVTLRQPSATPGSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQI 60
             +G V +VT+RQP    G  ++ HGRF+IL +S +FLP  A   P  +   + LAG QGQ+
Sbjct:   120 NGAVTNVTVRQPG---GGVVSLHGRFEILSLSGSFLPPPAP--PAASGLKVYLAGGQGQV 174

Query:    61 MGGSVVGPLLXXXXXXXXXXXXNNPSYHRLPVQDEQQ 97
             +GGSVVGPL              N SY RLP+++E++
Sbjct:   175 IGGSVVGPLTASSPVVVMAASFGNASYERLPLEEEEE 211

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

TAIR|locus:505006460 AHL20 "AT4G14465" [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 41/96 (42%), Positives = 60/96 (62%)

Query:     1 SGTVASVTLRQPSATPGSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQI 60
             +G+VA+VTLRQ +A PG  ++  GRF+IL ++  FLP  +   P      + LAG QGQ+
Sbjct:   128 TGSVANVTLRQ-AAAPGGVVSLQGRFEILSLTGAFLPGPSP--PGSTGLTVYLAGVQGQV 184

Query:    61 MGGSVVGPLLXXXXXXXXXXXXNNPSYHRLPVQDEQ 96
             +GGSVVGPLL            +N +Y RLP+++E+
Sbjct:   185 VGGSVVGPLLAIGSVMVIAATFSNATYERLPMEEEE 220

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2129490 AT4G17800 [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 45/99 (45%), Positives = 59/99 (59%)

Query:     1 SGTVASVTLRQPSATPGSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQI 60
             SGTV +V++RQPSA  G+ +T  G F+IL +S +FLP  A   P      I LAG QGQ+
Sbjct:   143 SGTVTNVSIRQPSAA-GAVVTLQGTFEILSLSGSFLPPPAP--PGATSLTIFLAGGQGQV 199

Query:    61 MGGSVVGPLLXXXXXXXXXXXXNNPSYHRLPVQ-DEQQR 98
             +GGSVVG L              N +Y RLP++ DEQQ+
Sbjct:   200 VGGSVVGELTAAGPVIVIAASFTNVAYERLPLEEDEQQQ 238

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2084958 AHL19 "AT-hook motif nuclear-localized protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 1.2e-14, P = 1.2e-14
 Identities = 45/103 (43%), Positives = 62/103 (60%)

Query:     1 SGTVASVTLRQPS-----ATPG--STITFHGRFDILWISATFLPQNAAYLPLPNIFAISL 53
             +GTVA+VTLRQPS     A PG  + +   GRF+IL ++ +FLP  A   P      I L
Sbjct:   141 NGTVANVTLRQPSTAAVAAAPGGAAVLALQGRFEILSLTGSFLPGPAP--PGSTGLTIYL 198

Query:    54 AGPQGQIMGGSVVGPLLXXXXXXXXXXXXNNPSYHRLPVQDEQ 96
             AG QGQ++GGSVVGPL+            +N +Y RLP+++E+
Sbjct:   199 AGGQGQVVGGSVVGPLMAAGPVMLIAATFSNATYERLPLEEEE 241

GO:0005737 "cytoplasm" evidence=ISM

GO:0050832 "defense response to fungus" evidence=IMP

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

TAIR|locus:2099956 AGF2 "AT-hook protein of GA feedback 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 2.5e-14, P = 2.5e-14
 Identities = 39/98 (39%), Positives = 58/98 (59%)

Query:     1 SGTVASVTLRQPSATPGSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQI 60
             SG V +VTLRQP+A+ G  ++  G+F+IL +   FLP + +      +  I LAG QGQ+
Sbjct:   149 SGLVTNVTLRQPAAS-GGVVSLRGQFEILSMCGAFLPTSGSPAAAAGL-TIYLAGAQGQV 206

Query:    61 MGGSVVGPLLXXXXXXXXXXXXNNPSYHRLPVQDEQQR 98
             +GG V GPL+             N +Y RLP+++EQQ+
Sbjct:   207 VGGGVAGPLIASGPVIVIAATFCNATYERLPIEEEQQQ 244

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	132
pfam03479	120	pfam03479, DUF296, Domain of unknown function (DUF	3e-16
cd11378	113	cd11378, DUF296, Domain of unknown function found	4e-10

>gnl|CDD|217587 pfam03479, DUF296, Domain of unknown function (DUF296)

 Score = 69.1 bits (170), Expect = 3e-16
 Identities = 34/90 (37%), Positives = 45/90 (50%), Gaps = 7/90 (7%)

Query: 1   SGTVASVTLRQPSATPGS--TITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQG 58
            G V++VTLRQP     S   +T  GRF+IL +S T  P       L     +SLA P G
Sbjct: 35  IGAVSNVTLRQPDEEAKSYGVVTLEGRFEILSLSGTISPGGKPSGHL----HVSLADPDG 90

Query: 59  QIMGGSVV-GPLLAVGTVFVVAATFNNPSY 87
           Q++GG +  G + A G V V   +F N   
Sbjct: 91  QVVGGHLAEGTVFATGEVVVTELSFENARR 120

This putative domain is found in proteins that contain AT-hook motifs pfam02178, which strongly suggests a DNA-binding function for the proteins as a whole. There are three highly conserved histidine residues, eg at 117, 119 and 133 in Reut_B5223, which should be a structurally conserved metal-binding unit, based on structural comparison with known metal-binding structures. The proteins should work as trimers. Length = 120

>gnl|CDD|211390 cd11378, DUF296, Domain of unknown function found in archaea, bacteria, and plants

 Score = 53.0 bits (128), Expect = 4e-10
 Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 2   GTVASVTLRQPS--ATPGSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQ 59
           G V++ TLR P        T+TF GR +IL +S    P +           +SLA   G+
Sbjct: 35  GAVSNATLRYPDPEPKEYETVTFEGRLEILSLSGNISPDDGKPSG---HLHVSLADSDGR 91

Query: 60  IMGGSVVGPLLAVGTVFVVAATF 82
           ++GG ++G L+A GTV VV    
Sbjct: 92  VIGGHLLGALVA-GTVEVVIGEL 113

This domain is found in proteins that contain AT-hook motifs, which suggests a role in DNA-binding for the proteins as a whole. Three conserved histidine residues appear to form a zinc-binding site, and the domain has been observed to form homotrimers. It co-occurs with a thioredoxin-like domain in uncharacterized cyanobacterial proteins. Length = 113

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	132
PF03479	120	DUF296: Domain of unknown function (DUF296); Inter	99.66
COG1661	141	Predicted DNA-binding protein with PD1-like DNA-bi	99.51

>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown

Probab=99.66  E-value=1.6e-16  Score=116.15  Aligned_cols=84  Identities=29%  Similarity=0.462  Sum_probs=65.9

Q ss_pred             cceeEEEeeCCCC-CCCCcEEEeeeeeEEEeeeeeecCCCCCCCCCCeeEEEEeCCCCceEeeecccCceecceEEEEee
Q 044200            2 GTVASVTLRQPSA-TPGSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQIMGGSVVGPLLAVGTVFVVAA   80 (132)
Q Consensus         2 GsVs~VtLR~p~~-~~~~~~tl~G~FEIlSLsGT~~p~~~~~~~~~~~l~ISLA~~~GqViGG~V~G~liAat~V~Vv~~   80 (132)
                      |+|++|+||+++. ....+.+++|+|||+||+||+.+.+.   ++..||||+|+++||+|+||||....+ ..++||++-
T Consensus        36 Gsl~~~~l~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g---~~~~HlHisl~~~~g~v~gGHl~~g~v-~~t~Ev~i~  111 (120)
T PF03479_consen   36 GSLSNVTLGYYDPPSYYEPLEFEGPFEIISLSGTISPEDG---KPFVHLHISLADPDGQVFGGHLLEGTV-FATAEVVIT  111 (120)
T ss_dssp             EEEEEEEEEEEETTTEEEEEEEESEEEEEEEEEEEEEETT---EEEEEEEEEEE-TTSEEEEEEEEEEEE-EEEEEEEEE
T ss_pred             eEEeEEEEEEecccCCcceEEecccEEEEEeEEEEECCCC---CCcceEEEEEECCCCeEEeeEeCCCEE-eEEEEEEEE
Confidence            8999999999631 11468899999999999999998332   345799999999999999999995555 666677777


Q ss_pred             ecCCcceee
Q 044200           81 TFNNPSYHR   89 (132)
Q Consensus        81 sF~~~~f~R   89 (132)
                      .+....|.|
T Consensus       112 ~~~~~~~~~  120 (120)
T PF03479_consen  112 ELSGINFTR  120 (120)
T ss_dssp             EETTEEEEE
T ss_pred             EecCccccC
Confidence            666666665

Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.

>COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

Probab=99.51  E-value=6.3e-14  Score=107.23  Aligned_cols=87  Identities=15%  Similarity=0.147  Sum_probs=78.2

Q ss_pred             cceeEEEeeCCCCC--CCCcEEEeeeeeEEEeeeeeecCCCCCCCCCCeeEEEEeCCCCceEeeecccCceecceEEEEe
Q 044200            2 GTVASVTLRQPSAT--PGSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQIMGGSVVGPLLAVGTVFVVA   79 (132)
Q Consensus         2 GsVs~VtLR~p~~~--~~~~~tl~G~FEIlSLsGT~~p~~~~~~~~~~~l~ISLA~~~GqViGG~V~G~liAat~V~Vv~   79 (132)
                      |++++++||..+..  .-.++++.+|||||||.|++..++     +..|+|++|++++|+++|||+....+.. ++||+|
T Consensus        44 Gal~~~~l~~~~~~~~~y~~~~~~e~~EvlSL~G~i~~~~-----p~~HlHa~l~~~~G~~~GGHL~~~~V~~-t~Ev~I  117 (141)
T COG1661          44 GALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGNIALDD-----PFVHLHAALGDENGITLGGHLLEGEVFP-TAEVFI  117 (141)
T ss_pred             eeeeeeEEEEecCCCCceEEEecCCcEEEEEecceeecCC-----CcEEEEEEEecCCCcEEeeeecccEEeE-EEEEEE
Confidence            78999999998732  135889999999999999999987     3469999999999999999999999988 999999


Q ss_pred             eecCCcceeeccCcc
Q 044200           80 ATFNNPSYHRLPVQD   94 (132)
Q Consensus        80 ~sF~~~~f~R~p~~~   94 (132)
                      -.++...+.|.+++.
T Consensus       118 ~el~~~~~~R~~d~~  132 (141)
T COG1661         118 RELPGELFRREFDPT  132 (141)
T ss_pred             EEccccceeEecCCC
Confidence            999999999999884

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	132
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	99.82
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	99.8
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	99.77
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	99.77
3htn_A	149	Putative DNA binding protein; DUF269 family protei	99.73
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	99.56

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}

Probab=99.82  E-value=4.7e-20  Score=137.41  Aligned_cols=84  Identities=23%  Similarity=0.335  Sum_probs=76.1

Q ss_pred             cceeEEEeeCCCCCCCCcEEEeeeeeEEEeeeeeecCCCCCCCCCCeeEEEEeCCCCceEeeecccCceecceEEEEeee
Q 044200            2 GTVASVTLRQPSATPGSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQIMGGSVVGPLLAVGTVFVVAAT   81 (132)
Q Consensus         2 GsVs~VtLR~p~~~~~~~~tl~G~FEIlSLsGT~~p~~~~~~~~~~~l~ISLA~~~GqViGG~V~G~liAat~V~Vv~~s   81 (132)
                      |+|++++||+|+.  ..+++++|+|||+||+||+.+..       .||||+++|+||||+||||+..+++..++||++..
T Consensus        38 Gsl~~~~l~~~~~--~~~~~~~g~~EIlsl~Gti~~~~-------~HlHisl~~~~G~v~GGHl~~g~~V~~t~Ev~i~~  108 (142)
T 2p6y_A           38 GCLSTLHIRLADS--VSTLQVSAPFEILSLSGTLTYQH-------CHLHIAVADAQGRVWGGHLLEGNLINTTAELMIHH  108 (142)
T ss_dssp             EEEEEEEEECTTS--SCEEEECSCEEEEEEEEEECSSC-------EEEEEEEECTTSCEEEEEECTTCEECC-EEEEEEE
T ss_pred             EEEEeEEEECCCC--CccEecCCcEEEEEeEEEEeCCC-------CEEEEEEECCCCCEEccccCCCCeEEEEEEEEEEE
Confidence            7889999999986  34789999999999999999862       59999999999999999999888888999999999


Q ss_pred             cCCcceeeccCcc
Q 044200           82 FNNPSYHRLPVQD   94 (132)
Q Consensus        82 F~~~~f~R~p~~~   94 (132)
                      |.++.|.|+||++
T Consensus       109 ~~~~~~~R~~D~e  121 (142)
T 2p6y_A          109 YPQHHFTREFDPN  121 (142)
T ss_dssp             CTTEEEEEEEETT
T ss_pred             ccCCeEEEeeCCC
Confidence            9999999999875

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A

Probab=99.80  E-value=2.1e-19  Score=135.63  Aligned_cols=84  Identities=19%  Similarity=0.389  Sum_probs=77.0

Q ss_pred             cceeEEEeeCCCCCCCCcEEEeeeeeEEEeeeeeecCCCCCCCCCCeeEEEEeCCCCceEeeecccCceecceEEEEeee
Q 044200            2 GTVASVTLRQPSATPGSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQIMGGSVVGPLLAVGTVFVVAAT   81 (132)
Q Consensus         2 GsVs~VtLR~p~~~~~~~~tl~G~FEIlSLsGT~~p~~~~~~~~~~~l~ISLA~~~GqViGG~V~G~liAat~V~Vv~~s   81 (132)
                      |+|++++||+++.  ..+++|+|+|||+||+||+.+..       .||||+++|+||||+||||+..+++..++||++..
T Consensus        54 Gsl~~~~l~~~~~--~~~~~~~g~~EIlsl~Gti~~~~-------~HlHisl~~~~G~v~GGHL~~g~~V~~t~Ev~i~~  124 (154)
T 2hx0_A           54 GSLTDVALRYAGQ--EATTSLTGTFEVISLNGTLELTG-------EHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGE  124 (154)
T ss_dssp             EEEEEEEEECTTC--SSCEEEEEEEEEEEEEEEEETTE-------EEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEE
T ss_pred             eeeEEeEEEccCC--CccEecCCcEEEEEeeeeEeCCC-------CEEEEEEECCCCCEEccccCCCCcEEEEEEEEEEE
Confidence            7889999999986  34889999999999999999962       59999999999999999999888888999999999


Q ss_pred             cCCcceeeccCcc
Q 044200           82 FNNPSYHRLPVQD   94 (132)
Q Consensus        82 F~~~~f~R~p~~~   94 (132)
                      |.+..|.|+||++
T Consensus       125 ~~~~~~~R~~D~e  137 (154)
T 2hx0_A          125 LPALTFSRQPCAI  137 (154)
T ss_dssp             CTTEEEEEEECTT
T ss_pred             ccCceEEEecCCC
Confidence            9999999999875

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}

Probab=99.77  E-value=2.9e-19  Score=132.76  Aligned_cols=87  Identities=14%  Similarity=0.214  Sum_probs=74.9

Q ss_pred             cceeEEEeeCCCCCC--CCcEEEeeeeeEEEeeeeeecCCCCCCCCCCeeEEEEeCCCCceEeeecccCceecceEEEEe
Q 044200            2 GTVASVTLRQPSATP--GSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQIMGGSVVGPLLAVGTVFVVA   79 (132)
Q Consensus         2 GsVs~VtLR~p~~~~--~~~~tl~G~FEIlSLsGT~~p~~~~~~~~~~~l~ISLA~~~GqViGG~V~G~liAat~V~Vv~   79 (132)
                      |+|++|+||+++...  -..++++|+|||+||+||+.+.+.   .+..||||+++|+||||+||||...+ .. ++||++
T Consensus        44 Gsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~~g---~p~~HlHi~l~~~~G~v~GGHl~~g~-v~-t~Ev~i  118 (143)
T 2dt4_A           44 GTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLKDG---EPFVHAHVSLGNEEGIVFGGHLVEGE-VF-VAEIFL  118 (143)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEETT---EEEEEEEEEEECTTSCEEEEEEEEEE-EE-EEEEEE
T ss_pred             EEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECCCC---CceeeEEEEEECCCCCEeCCCCCCCc-eE-EEEEEE
Confidence            789999999987421  136889999999999999998632   34579999999999999999999888 56 999999


Q ss_pred             eecCCcceeeccCcc
Q 044200           80 ATFNNPSYHRLPVQD   94 (132)
Q Consensus        80 ~sF~~~~f~R~p~~~   94 (132)
                      ..|.+..|.|+| ++
T Consensus       119 ~~~~~~~~~R~~-~e  132 (143)
T 2dt4_A          119 QELKGEKIERKP-TK  132 (143)
T ss_dssp             EEEEESCCEEBC-CT
T ss_pred             EEcCCCeEEEeC-CC
Confidence            999999999999 54

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3

Probab=99.77  E-value=3.9e-19  Score=132.45  Aligned_cols=86  Identities=14%  Similarity=0.141  Sum_probs=75.8

Q ss_pred             cceeEEEeeCCCCCCC---CcEEEeeeeeEEEeeeeeecCCCCCCCCCCeeEEEEeCCCCceEeeecccCceecceEEEE
Q 044200            2 GTVASVTLRQPSATPG---STITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQIMGGSVVGPLLAVGTVFVV   78 (132)
Q Consensus         2 GsVs~VtLR~p~~~~~---~~~tl~G~FEIlSLsGT~~p~~~~~~~~~~~l~ISLA~~~GqViGG~V~G~liAat~V~Vv   78 (132)
                      |+|++++||+++.. .   .+++++|+|||+||+||+.+.+.   .+..||||+|+ +||+|+||||...++  .++||+
T Consensus        44 Gsl~~~~l~~~~~~-~~~y~~~~~~g~~EIlsl~Gti~~~dg---~p~~HlHi~l~-~~G~v~gGHl~~g~V--~t~Evv  116 (146)
T 2h6l_A           44 GAVRSAVIGYYDQE-KKEYVKKELMEPLEILSLSGNVSMKDS---KPFCHIHVLLG-KDGEVYGGHLFSAEV--FACEVF  116 (146)
T ss_dssp             EEEEEEEEEEEETT-TTEEEEEEECSCEEEEEEEEEEEEETT---EEEEEEEEEEE-EBTEEEEEEEEEEEE--EEEEEE
T ss_pred             EEEEEEEEECCCCC-CcceeEEEecCcEEEEEeEEEEECCCC---CceeeEEEEEC-CCCcEEeeecCCCEE--EEEEEE
Confidence            78999999998752 2   26899999999999999998632   34579999999 999999999999995  799999


Q ss_pred             eeecCCcceeeccCcc
Q 044200           79 AATFNNPSYHRLPVQD   94 (132)
Q Consensus        79 ~~sF~~~~f~R~p~~~   94 (132)
                      +.+|.+..|.|+||++
T Consensus       117 i~~~~~~~~~R~~D~e  132 (146)
T 2h6l_A          117 VLPLSGEAPERAFDEQ  132 (146)
T ss_dssp             EEECBSCCCBEEECTT
T ss_pred             EEEcCCCcEEEeECCC
Confidence            9999999999999875

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0

Probab=99.73  E-value=4.6e-18  Score=127.69  Aligned_cols=88  Identities=16%  Similarity=0.224  Sum_probs=76.0

Q ss_pred             cceeEEEeeCCCCCC--CCcEEEeeeeeEEEeeeeeecCCCCCCCCCCeeEEEEeCCCCceEeeecccCceecceEEEEe
Q 044200            2 GTVASVTLRQPSATP--GSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQIMGGSVVGPLLAVGTVFVVA   79 (132)
Q Consensus         2 GsVs~VtLR~p~~~~--~~~~tl~G~FEIlSLsGT~~p~~~~~~~~~~~l~ISLA~~~GqViGG~V~G~liAat~V~Vv~   79 (132)
                      |++++|+||+++...  -.+++++|+|||+||+||+.+.+.   .+..||||+|+|++|+|+||||... ++..++||+|
T Consensus        50 Gsl~~~~l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~dG---~p~~HlH~sl~~~~G~v~gGHl~~g-~V~~t~Ei~i  125 (149)
T 3htn_A           50 GAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSMNE---QVYLHLHITVGRSDYSALAGHLLSA-IQNGAGEFVV  125 (149)
T ss_dssp             EEEEEEEEEEECTTTCCEEEEEECSCEEEEEEEEEEEEETT---EEEEEEEEEEECTTSBEEEEEEEEE-EEEEEEEEEE
T ss_pred             EEeeeEEEEccCCCcccceeEEecCceEEEEeEEEEEccCC---CceEEEEEEEECCCCCEEeEEeCCC-EEEEEEEEEE
Confidence            889999999976421  127899999999999999999632   3457999999999999999999988 7889999999


Q ss_pred             eecCCcceeeccCcc
Q 044200           80 ATFNNPSYHRLPVQD   94 (132)
Q Consensus        80 ~sF~~~~f~R~p~~~   94 (132)
                      ..+.. .+.|.+|++
T Consensus       126 ~~~~~-~~~R~~D~~  139 (149)
T 3htn_A          126 EDYSE-RISRTYNPD  139 (149)
T ss_dssp             EECCS-CCEEEEETT
T ss_pred             EEcCC-eeEEeeCCc
Confidence            99988 899998875

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}

Probab=99.56  E-value=5.6e-15  Score=110.47  Aligned_cols=88  Identities=10%  Similarity=0.103  Sum_probs=71.4

Q ss_pred             cceeEEEeeCCCCCC--CCcEEEeeeeeEEEeeeeeecCCCCCCCCCCeeEEEEeCCCCceEeeecccCceecceEEEEe
Q 044200            2 GTVASVTLRQPSATP--GSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQIMGGSVVGPLLAVGTVFVVA   79 (132)
Q Consensus         2 GsVs~VtLR~p~~~~--~~~~tl~G~FEIlSLsGT~~p~~~~~~~~~~~l~ISLA~~~GqViGG~V~G~liAat~V~Vv~   79 (132)
                      |++++++||..+...  -...+++ +|||+||+||+.+.+.   .+..||||+++|.+|+|+|||+....+...|+||++
T Consensus        47 Gsl~~~~l~~~~~~~~~y~~~~~~-~~Ei~sl~Gtis~~dG---~p~~HlH~~~~d~~g~v~GGHL~~g~V~~~t~Ei~i  122 (147)
T 3hwu_A           47 GFMSEATFGFYDFGRKQFDPKTYR-NVEMANMTGSIAWKEG---KPSIHAHGTVTDGTFQGAGGHLLGLTVGTGSCEITV  122 (147)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEEEE-EEEEEEEEEEEEEETT---EEEEEEEEEEECTTCCEEEEEEEEEEEEEEEEEEEE
T ss_pred             ecccEEEEEeecCCcCccccEEec-CcEEEEEEEEEEcCCC---CceEEEEEEEECCCCcEEeeEecCcEEEeEeEEEEE
Confidence            789999999765321  1256788 8999999999998542   345699999999999999999998855445999999


Q ss_pred             eecCCcceeeccCcc
Q 044200           80 ATFNNPSYHRLPVQD   94 (132)
Q Consensus        80 ~sF~~~~f~R~p~~~   94 (132)
                      ..+.. .|.|.+|++
T Consensus       123 ~~~~~-~~~R~~D~~  136 (147)
T 3hwu_A          123 TVYPQ-RLDRFVDPE  136 (147)
T ss_dssp             EEESS-CCBEEEETT
T ss_pred             EEcCC-eEEEEECCc
Confidence            98764 999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	132
d2hx0a1	136	d.290.1.3 (A:6-141) Hypothetical protein STM3071 {	3e-11

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]} Length = 136

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

 Score = 54.9 bits (132), Expect = 3e-11
 Identities = 16/90 (17%), Positives = 37/90 (41%), Gaps = 9/90 (10%)

Query: 2   GTVASVTLRQPSATPGSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQIM 61
           G++  V LR       +T +  G F+++ ++ T                ++++ P G ++
Sbjct: 42  GSLTDVALRYAG--QEATTSLTGTFEVISLNGTLELTGEH-------LHLAVSDPYGVML 92

Query: 62  GGSVVGPLLAVGTVFVVAATFNNPSYHRLP 91
           GG ++       T+ +V       ++ R P
Sbjct: 93  GGHMMPGCTVRTTLELVIGELPALTFSRQP 122

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	132
d2hx0a1	136	Hypothetical protein STM3071 {Salmonella typhimuri	99.82
d2h6la1	138	Hypothetical protein AF0104 {Archaeoglobus fulgidu	99.52

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.82  E-value=4.2e-20  Score=135.22  Aligned_cols=85  Identities=19%  Similarity=0.382  Sum_probs=78.8

Q ss_pred             cceeEEEeeCCCCCCCCcEEEeeeeeEEEeeeeeecCCCCCCCCCCeeEEEEeCCCCceEeeecccCceecceEEEEeee
Q 044200            2 GTVASVTLRQPSATPGSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQIMGGSVVGPLLAVGTVFVVAAT   81 (132)
Q Consensus         2 GsVs~VtLR~p~~~~~~~~tl~G~FEIlSLsGT~~p~~~~~~~~~~~l~ISLA~~~GqViGG~V~G~liAat~V~Vv~~s   81 (132)
                      |++++|+||+|+.  .....++++|||+||+|++.+.+.       ||||+|+|++|+|+|||++..+++..++||+|..
T Consensus        42 Gs~~~~~~~~~~~--~~~~~~~g~~Ei~sl~G~I~~~~~-------HlH~~~a~~~g~v~gGhL~~g~~v~~t~Eivi~~  112 (136)
T d2hx0a1          42 GSLTDVALRYAGQ--EATTSLTGTFEVISLNGTLELTGE-------HLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGE  112 (136)
T ss_dssp             EEEEEEEEECTTC--SSCEEEEEEEEEEEEEEEEETTEE-------EEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEE
T ss_pred             eeeEEEEEEeCCC--CCcEEecCcEEEEEEEEEeccCCC-------eEEEEEECCCCcEEeEEecCCcEEEEEEEEEEEE
Confidence            7899999999985  468899999999999999988763       9999999999999999999999999999999999


Q ss_pred             cCCcceeeccCcch
Q 044200           82 FNNPSYHRLPVQDE   95 (132)
Q Consensus        82 F~~~~f~R~p~~~~   95 (132)
                      |.+.+|.|.+|++-
T Consensus       113 l~~~~~~R~~D~~t  126 (136)
T d2hx0a1         113 LPALTFSRQPCAIS  126 (136)
T ss_dssp             CTTEEEEEEECTTT
T ss_pred             ccCCceEEccCCCC
Confidence            99999999998764

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.52  E-value=6.9e-15  Score=106.42  Aligned_cols=87  Identities=14%  Similarity=0.135  Sum_probs=71.8

Q ss_pred             cceeEEEeeCCCCC--CCCcEEEeeeeeEEEeeeeeecCCCCCCCCCCeeEEEEeCCCCceEeeecccCceecceEEEEe
Q 044200            2 GTVASVTLRQPSAT--PGSTITFHGRFDILWISATFLPQNAAYLPLPNIFAISLAGPQGQIMGGSVVGPLLAVGTVFVVA   79 (132)
Q Consensus         2 GsVs~VtLR~p~~~--~~~~~tl~G~FEIlSLsGT~~p~~~~~~~~~~~l~ISLA~~~GqViGG~V~G~liAat~V~Vv~   79 (132)
                      |++++++||..+..  ......++|+|||+||+|++.+.+.   .+..|+|+++++ +|+++|||+....+.  ++++++
T Consensus        44 G~~~~~~l~~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g---~p~~HlH~~~~~-~g~~~gGHl~~~~v~--~~e~~i  117 (138)
T d2h6la1          44 GAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDS---KPFCHIHVLLGK-DGEVYGGHLFSAEVF--ACEVFV  117 (138)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETT---EEEEEEEEEEEE-BTEEEEEEEEEEEEE--EEEEEE
T ss_pred             eecccceEEEecCCCCccceEecCCCEEEEEeEEEEEcCCC---CcEEEEEEEECC-CCCEEEEEeCccEEE--EEEEEE
Confidence            78999999975431  1246789999999999999987653   345799999997 799999999988765  578888


Q ss_pred             eecCCcceeeccCcc
Q 044200           80 ATFNNPSYHRLPVQD   94 (132)
Q Consensus        80 ~sF~~~~f~R~p~~~   94 (132)
                      -.+.+..+.|.||++
T Consensus       118 ~~~~~~~~~R~~D~~  132 (138)
T d2h6la1         118 LPLSGEAPERAFDEQ  132 (138)
T ss_dssp             EECBSCCCBEEECTT
T ss_pred             EEecCCceEEecCCc
Confidence            899999999999765